6743 147 46 2 chr3 0 719 -218036439 + Tigger3b DNA MER2_type 1 794 -2234 2127 124 3 0 chr3 719 1017 -218036141 - AluSx SINE Alu -13 299 1 6743 147 46 2 chr3 1017 1476 -218035682 + Tigger3b DNA MER2_type 794 1231 0 21 0 0 0 chr3 1476 1497 -218035661 + AT_rich Low_complexity Low_complexity 1 21 0 759 247 70 29 chr3 1609 1934 -218035224 - LTR33A LTR ERVL 0 523 149 265 343 102 0 chr3 1997 2134 -218035024 + MARNA DNA Mariner 70 220 -366 234 336 58 19 chr3 2483 2587 -218034571 - MIR SINE MIR -8 254 147 1553 186 16 19 chr3 2592 2903 -218034255 - AluJb SINE Alu -2 310 1 588 21 105 0 chr3 2945 3088 -218034070 + (TA)n Simple_repeat Simple_repeat 2 159 0 231 271 104 0 chr3 3282 3378 -218033780 + L1ME3A LINE L1 6035 6140 -30 24 0 0 0 chr3 3513 3537 -218033621 + AT_rich Low_complexity Low_complexity 1 24 0 242 273 0 0 chr3 3994 4049 -218033109 + L2 LINE L2 3257 3311 -2 2144 105 3 3 chr3 5086 5382 -218031776 + AluSc SINE Alu 1 296 -13 22579 43 5 4 chr3 5717 9160 -218027998 - L1PA5 LINE L1 -140 6014 2570 8688 91 11 12 chr3 9776 10112 -218027046 - L1P3 LINE L1 -337 5817 5482 2336 102 7 0 chr3 10112 10417 -218026741 - AluSg SINE Alu -3 307 1 8688 91 11 12 chr3 10417 11787 -218025371 - L1P3 LINE L1 -672 5482 4110 362 251 117 64 chr3 13354 13525 -218023633 + L3 LINE CR1 1077 1256 -321 279 0 0 0 chr3 13741 13772 -218023386 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 336 133 8 chr3 14189 14317 -218022841 + L2 LINE L2 3170 3313 0 239 203 29 14 chr3 14335 14404 -218022754 + GA-rich Low_complexity Low_complexity 3 72 0 313 318 16 8 chr3 14541 14670 -218022488 - MIR SINE MIR -10 252 123 239 202 0 43 chr3 17393 17487 -218019671 + CT-rich Low_complexity Low_complexity 4 93 0 2056 115 7 3 chr3 17713 18009 -218019149 + AluSq SINE Alu 1 297 -16 315 71 0 0 chr3 18377 18419 -218018739 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1873 147 31 0 chr3 18422 18708 -218018450 - AluSx SINE Alu -17 295 1 4666 179 55 50 chr3 18979 19136 -218018022 + L1MB3 LINE L1 185 340 -6044 243 0 0 0 chr3 19136 19163 -218017995 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4666 179 55 50 chr3 19163 19343 -218017815 + L1MB3 LINE L1 340 518 -5866 2675 22 0 13 chr3 19343 19658 -218017500 - AluYa5 SINE Alu 0 311 1 4666 179 55 50 chr3 19658 20448 -218016710 + L1MB3 LINE L1 518 1319 -5065 * 6120 214 48 16 chr3 20442 22114 -218015044 + L1MB3 LINE L1 3909 5688 -731 2754 88 3 0 chr3 22114 22477 -218014681 + THE1B LTR MaLR 1 364 0 6120 214 48 16 chr3 22477 23231 -218013927 + L1MB3 LINE L1 5688 6416 -3 315 195 131 22 chr3 23260 23435 -218013723 - L1M LINE L1 -743 5403 5237 621 139 32 9 chr3 24448 24554 -218012604 - LTR12 LTR ERV1 -63 651 410 535 136 0 5 chr3 24567 24667 -218012491 + L1M3 LINE L1 5720 5816 -352 700 179 14 4 chr3 24667 24827 -218012331 - pTR5 LTR ERV1 -2122 316 49 257 274 0 0 chr3 24827 24900 -218012258 - LTR30 LTR ERV1 -98 624 552 1768 108 7 54 chr3 24902 25198 -218011960 - LTR12 LTR ERV1 -432 282 1 554 189 71 53 chr3 25277 25558 -218011600 - pTR5 LTR ERV1 -1410 1028 743 202 322 52 26 chr3 25583 25698 -218011460 + MIR3 SINE MIR 37 154 -54 402 243 0 18 chr3 25707 25826 -218011332 + MER69 DNA AcHobo 8 2469 -57 22 0 0 0 chr3 26392 26414 -218010744 + AT_rich Low_complexity Low_complexity 1 22 0 205 277 20 0 chr3 26414 26515 -218010643 + (TA)n Simple_repeat Simple_repeat 1 103 0 569 300 94 9 chr3 26600 26833 -218010325 + MIR SINE MIR 9 261 -1 355 244 13 0 chr3 27793 27871 -218009287 - MER117 DNA MER1_type -45 152 74 884 200 31 20 chr3 28692 28887 -218008271 - MER20 DNA MER1_type 0 219 23 228 333 0 0 chr3 28891 28951 -218008207 - MER20 DNA MER1_type -159 60 1 224 290 14 0 chr3 29158 29227 -218007931 + (TAG)n Simple_repeat Simple_repeat 1 70 0 255 250 0 42 chr3 29240 29312 -218007846 - MIR SINE MIR -76 186 118 203 204 19 0 chr3 30218 30272 -218006886 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 306 57 0 chr3 30319 30443 -218006715 + MIR SINE MIR 100 230 -32 185 400 0 18 chr3 32949 33059 -218004099 + MIR3 SINE MIR 92 199 -9 544 209 52 33 chr3 33240 33393 -218003765 - MER103 DNA DNA -1 165 10 476 300 81 37 chr3 33404 33867 -218003291 + LTR33 LTR ERVL 8 521 0 225 333 11 33 chr3 34177 34267 -218002891 - L2 LINE L2 -10 3262 3175 619 315 22 26 chr3 34339 34571 -218002587 - MIR SINE MIR -1 261 31 1284 175 0 9 chr3 34798 35026 -218002132 + L1PA16 LINE L1 5683 5908 -258 979 182 35 5 chr3 35127 35330 -218001828 + L1PA16 LINE L1 5941 6149 -17 37 23 0 0 chr3 35333 35377 -218001781 + AT_rich Low_complexity Low_complexity 1 44 0 25 75 0 0 chr3 36908 36961 -218000197 + AT_rich Low_complexity Low_complexity 1 53 0 594 99 0 0 chr3 37177 37268 -217999890 + (TC)n Simple_repeat Simple_repeat 1 91 0 24 0 0 0 chr3 37456 37480 -217999678 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr3 37503 37545 -217999613 + (CA)n Simple_repeat Simple_repeat 2 43 0 245 182 0 0 chr3 38164 38208 -217998950 - L2 LINE L2 0 3313 3270 238 269 9 46 chr3 38885 38993 -217998165 - MER103 DNA DNA -55 111 8 1020 239 31 82 chr3 39362 39751 -217997407 - MLT1A2 LTR MaLR -5 369 1 386 283 51 36 chr3 40090 40228 -217996930 - L2 LINE L2 0 3272 3133 330 355 106 43 chr3 41807 42473 -217994685 + L2 LINE L2 2560 3255 -17 208 239 11 34 chr3 42475 42563 -217994595 + (TA)n Simple_repeat Simple_repeat 2 87 0 317 261 0 33 chr3 42565 42657 -217994501 - L1MC4 LINE L1 -1340 6702 6614 36 77 0 0 chr3 42657 42735 -217994423 + AT_rich Low_complexity Low_complexity 1 78 0 2504 134 41 24 chr3 42752 43171 -217993987 + MSTB1 LTR MaLR 7 432 0 2007 110 3 14 chr3 44694 45001 -217992157 - AluSx SINE Alu 0 306 3 704 243 14 43 chr3 45377 45631 -217991527 + L1MC5 LINE L1 6573 6830 -1007 1426 174 9 0 chr3 45634 45858 -217991300 + AluSq SINE Alu 3 228 -85 404 230 101 14 chr3 46033 46181 -217990977 + L1MC5 LINE L1 7028 7188 -773 206 32 32 0 chr3 46305 46336 -217990822 + (CA)n Simple_repeat Simple_repeat 1 32 0 1006 248 56 55 chr3 46403 46495 -217990663 + L1MC5 LINE L1 7287 7377 -584 210 37 0 0 chr3 46495 46522 -217990636 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1006 248 56 55 chr3 46522 46793 -217990365 + L1MC5 LINE L1 7377 7646 -315 2284 89 14 0 chr3 46793 47085 -217990073 + AluSc SINE Alu 1 296 -13 1006 248 56 55 chr3 47085 47358 -217989800 + L1MC5 LINE L1 7646 7925 -36 1755 235 28 11 chr3 47580 48039 -217989119 - MLT1C LTR MaLR 0 467 1 273 29 0 0 chr3 48189 48223 -217988935 + (CAT)n Simple_repeat Simple_repeat 2 35 0 219 264 31 70 chr3 48551 48680 -217988478 + MIR SINE MIR 136 259 -3 25 0 0 0 chr3 48972 48997 -217988161 + AT_rich Low_complexity Low_complexity 1 25 0 325 313 223 18 chr3 49071 49237 -217987921 + MIR SINE MIR 15 214 -48 201 323 175 21 chr3 49492 49681 -217987477 + L2 LINE L2 2831 3048 -224 276 137 0 0 chr3 49821 49872 -217987286 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 1786 260 46 8 chr3 51275 51860 -217985298 + L1 LINE L1 2273 2879 -3267 2463 152 7 7 chr3 51860 52294 -217984864 + L1MB1 LINE L1 5733 6166 -2 1955 131 7 0 chr3 52358 52675 -217984483 + AluSx SINE Alu 1 319 0 384 306 58 67 chr3 54606 54936 -217982222 + Charlie8 DNA MER1_type 211 537 -1880 354 294 108 37 chr3 55217 55456 -217981702 - MIR SINE MIR -3 259 6 505 222 0 0 chr3 56461 56551 -217980607 + MER45A DNA AcHobo 89 178 0 219 367 33 22 chr3 56551 56641 -217980517 + MER91A DNA MER1_type 103 193 -3 222 0 79 0 chr3 59543 59581 -217977577 + (TA)n Simple_repeat Simple_repeat 2 42 0 196 411 78 17 chr3 59709 59889 -217977269 + L2 LINE L2 2553 2743 -571 183 222 0 0 chr3 59889 59934 -217977224 + (TA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr3 60070 60092 -217977066 + AT_rich Low_complexity Low_complexity 1 22 0 321 310 159 31 chr3 60207 60433 -217976725 + MIR SINE MIR 5 259 -3 1737 168 3 7 chr3 60693 60984 -217976174 - AluJb SINE Alu -16 296 7 265 301 12 0 chr3 61805 61888 -217975270 - L1MC4 LINE L1 -1340 6702 6619 1076 233 166 14 chr3 61890 62234 -217974924 + MSTD LTR MaLR 1 396 0 6554 239 62 20 chr3 62240 63900 -217973258 + MSTD-int LTR MaLR 6 1735 0 717 194 70 47 chr3 63900 64204 -217972954 + MSTD LTR MaLR 1 311 -54 1676 145 11 0 chr3 64204 64473 -217972685 + L1PA16 LINE L1 5886 6157 -9 245 238 0 16 chr3 64500 64563 -217972595 + MSTD LTR MaLR 304 365 0 674 236 72 24 chr3 65139 65347 -217971811 - MER20 DNA MER1_type -1 218 1 297 0 0 0 chr3 66704 66737 -217970421 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 310 9 9 chr3 67994 68107 -217969051 + MLT1L LTR MaLR 503 615 0 400 182 10 10 chr3 70065 70164 -217966994 + CT-rich Low_complexity Low_complexity 2 100 0 446 181 14 199 chr3 70281 70573 -217966585 + LTR38B LTR ERV1 1 238 -372 365 219 35 84 chr3 70702 70980 -217966178 + LTR38B LTR ERV1 291 598 0 21 36 0 0 chr3 71725 71753 -217965405 + AT_rich Low_complexity Low_complexity 1 28 0 309 360 33 93 chr3 72670 73003 -217964155 + L2 LINE L2 2960 3272 0 249 250 104 0 chr3 73369 73465 -217963693 + MLT1I LTR MaLR 42 147 -262 390 42 0 0 chr3 74851 74899 -217962259 + (TG)n Simple_repeat Simple_repeat 1 48 0 1636 259 75 19 chr3 74984 75516 -217961642 + MLT1F1 LTR MaLR 3 564 -3 232 241 96 24 chr3 75529 75612 -217961546 - MIR SINE MIR -57 205 117 304 320 109 57 chr3 75658 76136 -217961022 - MLT1J LTR MaLR -6 505 3 287 324 150 19 chr3 77260 77473 -217959685 + HAL1 LINE L1 1684 1924 -583 287 240 58 58 chr3 77786 77940 -217959218 + HAL1b LINE L1 746 899 -449 274 328 44 59 chr3 78088 78223 -217958935 + L2 LINE L2 2880 3015 -298 1389 41 6 0 chr3 78223 78392 -217958766 - L1PA3 LINE L1 -1 6154 5985 274 328 44 59 chr3 78392 78597 -217958561 + L2 LINE L2 3015 3215 -98 24 0 0 0 chr3 78650 78674 -217958484 + AT_rich Low_complexity Low_complexity 1 24 0 1899 145 92 3 chr3 78703 79061 -217958097 + MLT1B LTR MaLR 1 390 0 222 37 0 0 chr3 79173 79200 -217957958 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr3 80098 80120 -217957038 + AT_rich Low_complexity Low_complexity 1 22 0 2484 144 64 7 chr3 80362 80798 -217956360 + LOR1b LTR ERV1 1 461 0 362 368 123 19 chr3 81004 81420 -217955738 + L2 LINE L2 2264 2722 -592 209 125 0 42 chr3 81442 81490 -217955668 + (TATG)n Simple_repeat Simple_repeat 3 48 0 229 342 26 0 chr3 82370 82446 -217954712 + L2 LINE L2 2993 3070 -202 225 341 49 0 chr3 82560 82642 -217954516 + L2 LINE L2 3227 3312 -1 364 230 34 32 chr3 82738 82846 -217954312 - MLT1H LTR MaLR 0 549 433 622 240 27 68 chr3 82938 83159 -217953999 - MLT1H LTR MaLR -243 306 95 1712 227 55 49 chr3 84422 84915 -217952243 + MLT1D LTR MaLR 5 500 -5 22 35 0 0 chr3 84972 85001 -217952157 + AT_rich Low_complexity Low_complexity 1 29 0 551 183 24 0 chr3 85051 85177 -217951981 - L1MC4 LINE L1 0 8042 7914 282 263 13 13 chr3 85336 85412 -217951746 - MER5C DNA MER1_type -248 76 1 953 112 149 0 chr3 85449 85610 -217951548 - MSTA LTR MaLR 0 428 244 424 167 42 0 chr3 85605 85677 -217951481 - MSTA LTR MaLR -353 75 1 * 232 309 85 0 chr3 85805 85899 -217951259 + L2 LINE L2 3200 3301 -12 2256 118 3 0 chr3 87916 88222 -217948936 - AluSq SINE Alu -6 307 1 513 280 60 30 chr3 88732 88964 -217948194 - MIR SINE MIR -8 254 16 180 250 0 0 chr3 89816 89852 -217947306 + MIR SINE MIR 226 261 -1 484 252 109 7 chr3 90374 90521 -217946637 + MIR SINE MIR 15 176 -86 240 296 0 37 chr3 91025 91106 -217946052 + MIR SINE MIR 180 257 -5 206 241 0 0 chr3 91132 91186 -217945972 + (TA)n Simple_repeat Simple_repeat 2 55 0 2273 77 0 10 chr3 91788 92108 -217945050 - AluY SINE Alu 0 311 1 26 30 0 0 chr3 92347 92380 -217944778 + AT_rich Low_complexity Low_complexity 1 33 0 345 47 0 0 chr3 92521 92564 -217944594 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr3 92735 92765 -217944393 + AT_rich Low_complexity Low_complexity 1 30 0 17898 43 5 3 chr3 93757 95986 -217941172 - L1P LINE L1 -3386 2760 529 24 0 0 0 chr3 96158 96182 -217940976 + AT_rich Low_complexity Low_complexity 1 24 0 203 273 0 18 chr3 97925 97980 -217939178 - L2 LINE L2 -9 3263 3210 2221 92 0 32 chr3 98954 99269 -217937889 - AluSx SINE Alu -7 305 1 849 105 7 14 chr3 100196 100339 -217936819 - L1PA13 LINE L1 0 6163 6022 388 352 54 37 chr3 101406 101758 -217935400 + L2 LINE L2 2312 2669 -645 2899 236 50 4 chr3 101854 102570 -217934588 + L1MD2 LINE L1 5390 6138 -221 271 260 39 0 chr3 102590 102667 -217934491 + L1MD3 LINE L1 7786 7865 -130 435 332 143 28 chr3 104004 104306 -217932852 + L2 LINE L2 2737 3070 -243 742 254 55 15 chr3 104317 104518 -217932640 - MER63A DNA MER1_type -1 209 1 307 313 0 0 chr3 104644 104724 -217932434 + L2 LINE L2 3234 3313 0 247 229 184 23 chr3 107058 107277 -217929881 - Charlie7 DNA MER1_type 0 2612 6 180 152 0 0 chr3 107710 107743 -217929415 + (TTA)n Simple_repeat Simple_repeat 2 34 0 872 283 14 0 chr3 107803 108022 -217929136 - MER58A DNA MER1_type 0 224 3 1735 178 23 26 chr3 108101 108449 -217928709 + MER7A DNA MER2_type 1 345 -1 1255 190 107 33 chr3 108592 108929 -217928229 + MLT1A1 LTR MaLR 4 365 0 46 54 0 0 chr3 109507 109581 -217927577 + AT_rich Low_complexity Low_complexity 1 74 0 449 350 31 20 chr3 110163 110417 -217926741 + MLT1H1 LTR MaLR 1 257 -298 22 80 0 0 chr3 110782 110832 -217926326 + AT_rich Low_complexity Low_complexity 1 50 0 359 219 109 8 chr3 111849 111977 -217925181 + MER103 DNA DNA 11 151 -15 221 376 12 0 chr3 112011 112096 -217925062 + L2 LINE L2 3224 3309 -4 428 341 18 66 chr3 112597 112823 -217924335 - MIR SINE MIR -30 232 18 1128 275 28 19 chr3 113308 113668 -217923490 - L2 LINE L2 -9 3304 2942 700 287 37 0 chr3 113769 113957 -217923201 - MER58A DNA MER1_type 0 224 30 217 267 0 0 chr3 113970 114015 -217923143 - L2 LINE L2 -514 2800 2756 652 286 123 62 chr3 114023 114537 -217922621 + MLT1H1 LTR MaLR 4 548 -19 1634 306 114 13 chr3 114545 115239 -217921919 - L2 LINE L2 -548 2766 2003 2137 150 28 11 chr3 115468 115829 -217921329 + THE1C LTR MaLR 9 375 0 21 0 0 0 chr3 116434 116455 -217920703 + AT_rich Low_complexity Low_complexity 1 21 0 557 204 55 0 chr3 116915 117096 -217920062 - L1MCa LINE L1 -2889 3537 3347 6291 157 7 26 chr3 117102 119323 -217917835 - L1PB1 LINE L1 0 6151 3974 694 221 21 5 chr3 119298 119488 -217917670 - L1MCa LINE L1 -3092 3334 3142 * 2300 202 48 20 chr3 119502 120351 -217916807 - L1MCa LINE L1 -3495 2931 2033 465 120 100 0 chr3 120446 120546 -217916612 - L1MCa LINE L1 -4384 2042 1933 325 393 34 11 chr3 120572 120750 -217916408 + L3 LINE CR1 1331 1512 -65 232 247 82 0 chr3 122741 122826 -217914332 + L1ME4a LINE L1 5844 5935 -186 21 36 0 0 chr3 124651 124679 -217912479 + AT_rich Low_complexity Low_complexity 1 28 0 318 319 86 17 chr3 126863 127095 -217910063 - L1MC/D LINE L1 -2036 5772 5525 187 318 0 0 chr3 127118 127162 -217909996 - MIR SINE MIR -203 59 16 196 287 103 46 chr3 127286 127373 -217909785 + MIR SINE MIR 11 102 -160 2051 124 89 3 chr3 127392 127730 -217909428 - THE1C LTR MaLR -8 367 1 237 67 0 0 chr3 128218 128248 -217908910 + LTR6A LTR ERV1 73 102 -462 22 0 0 0 chr3 129147 129169 -217907989 + AT_rich Low_complexity Low_complexity 1 22 0 1800 158 51 67 chr3 129355 129746 -217907412 + MLT2D LTR ERVL 1 534 -20 257 196 0 0 chr3 129771 129822 -217907336 + MLT2C1 LTR ERVL 347 397 0 2420 54 3 0 chr3 129982 130278 -217906880 + AluY SINE Alu 1 297 -14 2911 76 76 2 chr3 130444 130866 -217906292 + MLT2A2 LTR ERVL 1 453 0 474 60 90 0 chr3 130869 131003 -217906155 + (TA)n Simple_repeat Simple_repeat 2 147 0 1201 179 35 16 chr3 131345 131602 -217905556 + L1PA7 LINE L1 5891 6152 -2 1460 245 78 21 chr3 132146 132583 -217904575 + MLT1C LTR MaLR 6 467 0 766 235 131 40 chr3 132829 133250 -217903908 + LTR37B LTR ERV1 1 459 -9 729 227 0 6 chr3 133264 133427 -217903731 - FRAM SINE Alu -23 153 1 205 97 16 81 chr3 133809 133871 -217903287 + (TTATA)n Simple_repeat Simple_repeat 1 58 0 207 69 0 0 chr3 134083 134112 -217903046 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 297 193 28 chr3 134223 134368 -217902790 - MIR SINE MIR -73 189 21 349 303 9 9 chr3 134519 134628 -217902530 + MIR3 SINE MIR 54 162 -46 1279 218 49 35 chr3 134726 135153 -217902005 - HsTC2 DNA Tc2 -11 1887 1279 351 0 0 0 chr3 136176 136215 -217900943 + (CA)n Simple_repeat Simple_repeat 2 40 0 258 32 0 0 chr3 136214 136245 -217900913 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 927 233 43 9 chr3 136288 136520 -217900638 + MIR SINE MIR 1 240 -22 929 165 19 19 chr3 136555 136767 -217900391 - L1 LINE L1 -823 5323 5112 4760 169 25 6 chr3 136772 137670 -217899488 + L1MA8 LINE L1 5364 6278 -13 273 98 0 0 chr3 137683 137724 -217899434 + (CA)n Simple_repeat Simple_repeat 2 42 0 317 226 108 0 chr3 138823 138916 -217898242 + MER103 DNA DNA 57 159 -7 272 292 124 0 chr3 139576 139689 -217897469 + MER117 DNA MER1_type 6 132 -65 278 323 46 8 chr3 139754 139881 -217897277 - MIR SINE MIR -48 160 29 2343 83 0 0 chr3 139904 140205 -217896953 + AluSc SINE Alu 3 303 -6 2397 71 0 3 chr3 140831 141141 -217896017 + AluY SINE Alu 1 309 -2 228 315 77 49 chr3 141445 141588 -217895570 - MIR3 SINE MIR -4 204 58 685 259 129 9 chr3 143029 143261 -217893897 + MIR SINE MIR 2 261 -1 639 293 122 39 chr3 145131 145466 -217891692 - MLT1I LTR MaLR -5 404 42 234 204 0 19 chr3 145568 145622 -217891536 + (CA)n Simple_repeat Simple_repeat 2 54 0 276 100 0 0 chr3 145622 145662 -217891496 + (CCA)n Simple_repeat Simple_repeat 2 41 0 2116 249 42 41 chr3 145874 146698 -217890460 + L1MD2 LINE L1 3750 4574 -1572 893 216 0 39 chr3 146721 146953 -217890205 - AluJo SINE Alu -6 306 84 757 158 8 0 chr3 147056 147176 -217889982 - FLAM_C SINE Alu -22 121 1 331 277 52 78 chr3 147214 147445 -217889713 + L1MD2 LINE L1 4579 4803 -1343 24 85 0 0 chr3 147462 147521 -217889637 + AT_rich Low_complexity Low_complexity 1 59 0 3580 238 44 32 chr3 147526 148976 -217888182 + L1MD2 LINE L1 4793 6355 -4 * 5252 188 27 15 chr3 148973 149104 -217888054 + L1MA8 LINE L1 4195 4323 -1968 1910 132 3 56 chr3 149104 149423 -217887735 - AluSc SINE Alu -5 304 3 5252 188 27 15 chr3 149423 150165 -217886993 + L1MA8 LINE L1 4323 5055 -1236 2184 165 30 37 chr3 150165 150625 -217886533 + MSTB2 LTR MaLR 1 457 0 5252 188 27 15 chr3 150625 151820 -217885338 + L1MA8 LINE L1 5055 6291 0 22 0 0 0 chr3 152507 152529 -217884629 + AT_rich Low_complexity Low_complexity 1 22 0 200 327 0 0 chr3 153770 153825 -217883333 - MIR SINE MIR -150 112 58 366 303 53 53 chr3 154863 155051 -217882107 + L2 LINE L2 2584 2771 -543 3923 150 34 4 chr3 155323 156036 -217881122 - L1MA4 LINE L1 -6 6294 5561 322 287 60 47 chr3 156495 156645 -217880513 + L2 LINE L2 3162 3313 0 423 265 61 30 chr3 156752 156884 -217880274 - LTR16C LTR ERVL 0 491 356 1706 112 4 7 chr3 157614 157891 -217879267 - L1MA5A LINE L1 -1 6296 6021 187 296 37 19 chr3 158215 158269 -217878889 + L2 LINE L2 3134 3188 -84 354 322 22 0 chr3 159343 159433 -217877725 + MER5A DNA MER1_type 10 101 -88 525 366 50 9 chr3 159520 159837 -217877321 + MLT1J LTR MaLR 3 332 -179 25 0 0 0 chr3 161696 161721 -217875437 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 24 chr3 162200 162229 -217874929 + AT_rich Low_complexity Low_complexity 1 30 -11 1184 15 0 0 chr3 162229 162366 -217874792 - L1PA4 LINE L1 -8 6147 6011 31 0 0 24 chr3 162366 162378 -217874780 + AT_rich Low_complexity Low_complexity 30 41 0 239 325 38 12 chr3 163056 163136 -217874022 + MIR SINE MIR 34 115 -147 285 29 0 0 chr3 163174 163208 -217873950 + (GA)n Simple_repeat Simple_repeat 1 34 0 2121 305 43 46 chr3 163216 164961 -217872197 - L1M4 LINE L1 -888 5258 3520 608 241 91 37 chr3 165300 165541 -217871617 + Charlie5 DNA MER1_type 2234 2487 -125 246 301 0 0 chr3 165567 165640 -217871518 - L1M4 LINE L1 -2056 4090 4018 721 359 31 29 chr3 165654 166234 -217870924 + L1PA13 LINE L1 788 1368 -6206 471 300 52 14 chr3 166218 166492 -217870666 + L1PA13 LINE L1 2069 2303 -5271 * 4287 231 35 18 chr3 166730 167947 -217869211 + L1PA13 LINE L1 2188 3439 -4145 2076 143 0 0 chr3 167947 168248 -217868910 + AluSx SINE Alu 3 303 -9 4287 231 35 18 chr3 168248 168431 -217868727 + L1PA13 LINE L1 3439 3617 -3967 24 0 0 0 chr3 168631 168655 -217868503 + AT_rich Low_complexity Low_complexity 1 24 0 2896 252 50 14 chr3 168793 169806 -217867352 + L1PA13 LINE L1 3599 4648 -2936 * 16282 191 32 37 chr3 169799 173484 -217863674 - L1PB1 LINE L1 0 6867 3167 7107 6 0 0 chr3 173484 174278 -217862880 + L1PA2 LINE L1 5344 6138 -17 16282 191 32 37 chr3 174278 176646 -217860512 - L1PB1 LINE L1 -3700 3167 993 273 29 0 0 chr3 176646 176680 -217860478 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 16282 191 32 37 chr3 176680 177668 -217859490 - L1PB1 LINE L1 -5874 993 2 246 356 130 14 chr3 177724 177940 -217859218 + L2 LINE L2 2830 3070 -202 271 311 75 112 chr3 178536 179106 -217858052 + LTR67 LTR ERVL 4 552 -5 445 305 41 35 chr3 179353 179550 -217857608 + MIR SINE MIR 65 262 0 230 363 50 45 chr3 180382 180561 -217856597 - L2 LINE L2 -522 2792 2613 22 0 0 0 chr3 180950 180972 -217856186 + AT_rich Low_complexity Low_complexity 1 22 0 2303 123 43 6 chr3 181106 181457 -217855701 + THE1B LTR MaLR 1 364 0 1345 215 49 89 chr3 182234 182760 -217854398 + MLT1D LTR MaLR 1 505 0 2166 109 3 0 chr3 184227 184521 -217852637 - AluSx SINE Alu -17 295 1 199 298 229 0 chr3 184651 184782 -217852376 - MIR SINE MIR -53 209 49 1039 105 62 0 chr3 185506 185668 -217851490 - L1PA16 LINE L1 -16 6150 5979 371 221 171 57 chr3 185769 185909 -217851249 - MER5B DNA MER1_type -22 156 1 348 228 38 13 chr3 185979 186058 -217851100 - MER94 DNA DNA -53 81 1 319 317 14 62 chr3 186060 186205 -217850953 - MER5A DNA MER1_type -24 165 28 3897 189 40 0 chr3 186222 187003 -217850155 - L1MC1 LINE L1 0 6333 5522 229 126 5 7 chr3 237003 237194 -217799964 + AluSq SINE Alu 66 295 -4 1821 142 7 23 chr3 237478 237780 -217799378 - AluSx SINE Alu -15 297 1 1879 171 97 8 chr3 238028 238419 -217798739 + MSTB LTR MaLR 1 426 0 272 89 0 22 chr3 239529 239574 -217797584 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr3 239938 239960 -217797198 + AT_rich Low_complexity Low_complexity 1 22 0 1256 140 0 0 chr3 240036 240215 -217796943 - AluSg/x SINE Alu -2 310 132 270 294 76 11 chr3 240315 240407 -217796751 - L2 LINE L2 0 3272 3175 1799 252 21 14 chr3 240574 241006 -217796152 - MER82 DNA MER2_type -7 646 212 428 82 0 0 chr3 241007 241068 -217796090 + Alu SINE Alu 241 301 -9 900 215 19 10 chr3 241303 241512 -217795646 - MER82 DNA MER2_type -433 220 10 260 77 0 0 chr3 241572 241611 -217795547 + MADE1 DNA Mariner 42 80 0 2252 106 0 7 chr3 242932 243235 -217793923 + AluSx SINE Alu 1 301 -11 374 308 43 0 chr3 243643 243760 -217793398 - L2 LINE L2 -7 3265 3144 35 54 0 0 chr3 243760 243816 -217793342 + AT_rich Low_complexity Low_complexity 1 56 0 3630 99 25 2 chr3 243848 244364 -217792794 + MER41B LTR ERV1 1 528 -107 2011 154 0 0 chr3 244371 244669 -217792489 - AluSx SINE Alu -12 300 3 277 337 70 30 chr3 244934 245364 -217791794 + L1ME LINE L1 5370 5816 -346 243 0 0 0 chr3 246261 246288 -217790870 + (T)n Simple_repeat Simple_repeat 1 27 0 264 306 72 0 chr3 246762 246873 -217790285 - L2 LINE L2 -6 3307 3189 736 225 7 7 chr3 247088 247264 -217789894 - AluJb SINE Alu 0 310 135 1717 190 40 54 chr3 247266 247346 -217789812 - L1MB7 LINE L1 -10 6174 6094 718 217 0 0 chr3 247346 247475 -217789683 - FLAM_A SINE Alu -1 132 4 1717 190 40 54 chr3 247475 247873 -217789285 - L1MB7 LINE L1 -90 6094 5703 403 327 92 9 chr3 249062 249279 -217787879 - MIR SINE MIR -3 259 25 272 400 22 22 chr3 251882 252017 -217785141 - L2 LINE L2 -4 3268 3134 195 322 164 0 chr3 252257 252409 -217784749 - L2 LINE L2 -400 2914 2738 26474 129 9 5 chr3 253084 258342 -217778816 - L1PA7 LINE L1 -1 6468 1189 264 224 35 0 chr3 258489 258547 -217778611 - AluJ/FLAM SINE Alu -242 60 1 1198 130 0 0 chr3 258707 258884 -217778274 + AluSg/x SINE Alu 131 307 -3 216 381 41 41 chr3 260662 260809 -217776349 - L2 LINE L2 -9 3263 3117 393 222 11 11 chr3 260966 261056 -217776102 - MLT1H LTR MaLR -387 162 73 330 247 31 31 chr3 261105 261202 -217775956 + MER5B DNA MER1_type 82 178 0 737 261 6 6 chr3 261209 261389 -217775769 - MER5A DNA MER1_type 0 189 10 259 273 16 62 chr3 261889 262017 -217775141 + LTR33 LTR ERVL 1 122 -399 722 164 0 210 chr3 262026 262108 -217775050 + MER5A DNA MER1_type 2 3 -186 897 143 0 8 chr3 262108 262241 -217774917 + FLAM_C SINE Alu 2 133 0 722 164 0 210 chr3 262241 262396 -217774762 + MER5A DNA MER1_type 3 189 0 686 307 77 25 chr3 262401 262766 -217774392 + LTR33 LTR ERVL 128 511 -10 201 94 0 0 chr3 263353 263385 -217773773 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 1723 155 14 47 chr3 263404 263700 -217773458 - AluJb SINE Alu -26 286 1 1496 207 18 3 chr3 263945 264230 -217772928 + AluJb SINE Alu 2 290 -22 568 187 90 15 chr3 264587 264721 -217772437 - L1MB2 LINE L1 -3 6168 6025 339 255 98 0 chr3 265523 265625 -217771533 + MIR SINE MIR 15 126 -136 234 329 40 79 chr3 266302 266530 -217770628 + L2 LINE L2 3006 3224 -48 374 353 68 10 chr3 267239 267446 -217769712 - MIR SINE MIR -19 243 25 212 317 20 20 chr3 268086 268187 -217768971 - MER5B DNA MER1_type 0 178 78 1621 274 48 25 chr3 268224 268778 -217768380 - MLT1F1 LTR MaLR 0 567 1 280 271 51 25 chr3 269754 269872 -217767286 - Charlie8 DNA MER1_type -1929 488 368 239 111 0 22 chr3 270003 270048 -217767110 + (TTCTCC)n Simple_repeat Simple_repeat 4 47 0 1704 173 4 4 chr3 270052 270329 -217766829 - AluJo SINE Alu -34 278 2 232 353 105 15 chr3 270665 270798 -217766360 + L2 LINE L2 3128 3272 0 1005 280 53 51 chr3 270955 271730 -217765428 - L2 LINE L2 0 3313 2542 435 363 97 0 chr3 271915 272193 -217764965 + L2 LINE L2 2658 2962 -352 259 352 11 11 chr3 272446 272534 -217764624 + L2 LINE L2 3190 3277 -36 366 74 0 0 chr3 272539 272593 -217764565 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 1928 160 0 16 chr3 274205 274512 -217762646 - AluSx SINE Alu -10 302 1 257 262 0 0 chr3 274627 274689 -217762469 + (CA)n Simple_repeat Simple_repeat 1 62 0 2171 162 7 55 chr3 275305 275597 -217761561 - Tigger2a DNA MER2_type -2274 434 170 1886 147 0 42 chr3 275597 275910 -217761248 - AluSx SINE Alu -12 300 1 2171 162 7 55 chr3 275910 276073 -217761085 - Tigger2a DNA MER2_type -2538 170 1 390 347 17 6 chr3 276925 277101 -217760057 + MIR SINE MIR 2 179 -83 285 260 90 0 chr3 277689 277789 -217759369 + MIR SINE MIR 128 236 -26 39 0 0 0 chr3 277954 277993 -217759165 + AT_rich Low_complexity Low_complexity 1 39 0 283 271 59 42 chr3 278038 278156 -217759002 + MLT1K LTR MaLR 456 575 -13 1418 99 0 0 chr3 278309 278501 -217758657 - AluY SINE Alu -14 297 106 669 25 0 0 chr3 278501 278580 -217758578 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2095 110 7 0 chr3 278580 278862 -217758296 - AluSq SINE Alu -29 284 1 470 234 11 4 chr3 279858 280135 -217757023 + (TA)n Simple_repeat Simple_repeat 1 279 0 1065 180 11 21 chr3 282870 283059 -217754099 + MER2 DNA MER2_type 1 187 -158 2424 76 0 0 chr3 283059 283360 -217753798 + AluSc SINE Alu 1 301 -8 333 269 26 0 chr3 283375 283453 -217753705 + MER2 DNA MER2_type 266 345 0 482 288 43 6 chr3 283786 283949 -217753209 + MIR SINE MIR 79 247 -15 1752 182 18 3 chr3 284185 284525 -217752633 - MER7A DNA MER2_type 0 346 4 2149 155 13 28 chr3 284905 285299 -217751859 + MLT1B LTR MaLR 1 388 -2 706 253 75 11 chr3 285694 285880 -217751278 - MLT1J2 LTR MaLR -214 236 39 930 243 13 26 chr3 286086 286312 -217750846 - MER58A DNA MER1_type 0 224 2 1972 82 0 70 chr3 286426 286697 -217750461 + L1PA10 LINE L1 5864 6113 -55 1710 141 21 35 chr3 286697 287000 -217750158 + AluSg SINE Alu 1 299 0 1972 82 0 70 chr3 287000 287043 -217750115 + L1PA10 LINE L1 6113 6157 -11 210 37 0 0 chr3 287116 287143 -217750015 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 306 300 40 72 chr3 287509 287759 -217749399 + MIR SINE MIR 21 262 0 236 320 119 21 chr3 287882 288076 -217749082 + L2 LINE L2 1966 2178 -1136 188 200 89 0 chr3 288480 288525 -217748633 - L2 LINE L2 0 3313 3265 529 338 39 13 chr3 288624 288855 -217748303 + MIR SINE MIR 25 261 -1 2231 85 10 7 chr3 289161 289466 -217747692 - AluY SINE Alu -5 306 1 21 36 0 0 chr3 292118 292146 -217745012 + AT_rich Low_complexity Low_complexity 1 28 0 1905 288 69 34 chr3 293231 293511 -217743647 - L1ME LINE L1 -4383 1697 1428 2445 51 0 0 chr3 293511 293804 -217743354 + AluY SINE Alu 2 294 -17 1905 288 69 34 chr3 293804 294737 -217742421 - L1ME LINE L1 -4652 1428 399 1829 207 14 8 chr3 294737 295100 -217742058 - MLT1A1 LTR MaLR 0 365 1 1905 288 69 34 chr3 295100 295447 -217741711 - L1ME LINE L1 -5681 399 66 1909 157 0 0 chr3 295447 295753 -217741405 - AluSx SINE Alu 0 308 3 270 190 0 38 chr3 295902 295981 -217741177 - MER116 DNA Mariner 0 80 5 3770 143 17 6 chr3 296505 297140 -217740018 - L1PA16 LINE L1 -9 6157 5516 386 335 37 31 chr3 297900 298091 -217739067 - MER117 DNA MER1_type 0 197 6 528 350 133 16 chr3 298320 298703 -217738455 - MLT1K LTR MaLR -151 437 10 354 321 108 71 chr3 298870 299150 -217738008 - MLT1J LTR MaLR -120 326 33 1625 127 19 16 chr3 299150 299457 -217737701 + AluY SINE Alu 1 308 -3 354 321 108 71 chr3 299457 299472 -217737686 - MLT1J LTR MaLR -413 33 20 21 0 0 0 chr3 299702 299723 -217737435 + AT_rich Low_complexity Low_complexity 1 21 0 261 330 113 19 chr3 299799 299905 -217737253 + MIR3 SINE MIR 66 181 -27 29 0 0 0 chr3 300555 300584 -217736574 + AT_rich Low_complexity Low_complexity 1 29 0 363 121 0 0 chr3 301438 301496 -217735662 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 307 284 23 11 chr3 301773 301861 -217735297 + L2 LINE L2 3223 3311 -2 426 273 52 32 chr3 305019 305173 -217731985 + MIR SINE MIR 49 205 -57 27 49 0 0 chr3 306143 306184 -217730974 + AT_rich Low_complexity Low_complexity 1 41 0 270 116 0 0 chr3 308044 308087 -217729071 + (TG)n Simple_repeat Simple_repeat 1 43 0 441 297 24 53 chr3 308577 308786 -217728372 + MIR SINE MIR 12 214 -48 442 257 88 70 chr3 309014 309185 -217727973 + MER5B DNA MER1_type 2 175 -3 194 266 13 76 chr3 309435 309514 -217727644 - MIR SINE MIR -112 150 77 358 275 70 0 chr3 309788 309930 -217727228 + Charlie8 DNA MER1_type 38 189 -2228 547 281 119 0 chr3 310051 310286 -217726872 - LTR33 LTR ERVL -37 484 222 290 270 22 11 chr3 310342 310431 -217726727 - LTR33 LTR ERVL -405 116 27 195 294 73 46 chr3 311413 311522 -217725636 - MIR SINE MIR -56 206 95 1755 184 0 34 chr3 311647 311968 -217725190 - AluJo SINE Alu -2 310 1 255 173 0 0 chr3 312182 312234 -217724924 + (TG)n Simple_repeat Simple_repeat 1 52 0 349 270 67 79 chr3 312378 312554 -217724604 - MIR SINE MIR -77 185 12 2218 94 14 0 chr3 312741 313027 -217724131 + AluSx SINE Alu 2 291 -21 1086 137 29 78 chr3 313037 313241 -217723917 + AluJo SINE Alu 36 229 -83 296 252 19 37 chr3 314667 314774 -217722384 + MIR SINE MIR 112 216 -46 27 0 0 0 chr3 315976 316003 -217721155 + AT_rich Low_complexity Low_complexity 1 27 0 1524 84 14 0 chr3 316120 316333 -217720825 - L1PA5 LINE L1 0 6154 5939 877 248 40 43 chr3 316783 317130 -217720028 - MLT1H1 LTR MaLR -2 553 208 689 299 51 0 chr3 319427 319781 -217717377 + MER113 DNA MER1_type? 31 402 -119 243 0 0 0 chr3 321512 321539 -217715619 + (CA)n Simple_repeat Simple_repeat 1 27 0 2878 153 70 23 chr3 321618 322233 -217714925 + L1MA6 LINE L1 5652 6295 -5 350 303 212 32 chr3 323874 324376 -217712782 - L2 LINE L2 0 3313 2703 248 246 40 48 chr3 325317 325347 -217711811 + L1M3 LINE L1 5318 5347 -824 4670 97 17 38 chr3 325347 325420 -217711738 + L1PA13 LINE L1 5419 5492 -671 2266 71 7 23 chr3 325420 325728 -217711430 + AluY SINE Alu 1 303 -8 4670 97 17 38 chr3 325728 326415 -217710743 + L1PA13 LINE L1 5492 6163 0 248 246 40 48 chr3 326415 326510 -217710648 + L1M3 LINE L1 5347 5442 -729 900 235 145 9 chr3 326519 326851 -217710307 + L1ME1 LINE L1 5782 6158 -8 958 154 11 69 chr3 326877 326966 -217710192 + FAM SINE Alu 1 77 -244 1111 94 5 80 chr3 326966 327167 -217709991 + MER30B DNA MER1_type 1 186 -4 958 154 11 69 chr3 327167 327252 -217709906 + FAM SINE Alu 77 165 -20 344 344 50 17 chr3 327257 327437 -217709721 + L1ME LINE L1 5431 5616 -505 2401 128 25 32 chr3 327438 327869 -217709289 + MER4E LTR ERV1 344 771 -8 826 206 110 10 chr3 328667 328876 -217708282 - MLT1D LTR MaLR 0 505 276 1001 227 108 31 chr3 328876 329314 -217707844 - LTR29 LTR ERV1 0 609 160 258 284 69 9 chr3 329316 329432 -217707726 - MER34 LTR ERV1 -409 133 11 792 233 26 48 chr3 329445 329715 -217707443 - MLT1D LTR MaLR -229 276 13 208 250 29 15 chr3 330014 330082 -217707076 + MIR SINE MIR 130 198 -64 2168 174 40 124 chr3 330157 330897 -217706261 - LTR8A LTR ERV1 0 727 51 2022 183 53 12 chr3 330897 331308 -217705850 + MSTA LTR MaLR 1 428 0 2168 174 40 124 chr3 331308 331325 -217705833 - LTR8A LTR ERV1 -676 51 34 1961 135 7 0 chr3 331408 331696 -217705462 + AluSx SINE Alu 1 290 -22 280 322 34 34 chr3 331750 331899 -217705259 - L2 LINE L2 -1 3312 3164 2361 110 0 0 chr3 332282 332582 -217704576 + AluSx SINE Alu 1 300 -12 286 170 0 0 chr3 332600 332653 -217704505 + L1M4 LINE L1 2315 2367 -3779 703 270 47 9 chr3 332937 333148 -217704010 - MER20 DNA MER1_type 0 219 1 400 77 31 0 chr3 333198 333263 -217703895 + (TG)n Simple_repeat Simple_repeat 2 68 0 189 0 0 0 chr3 334848 334869 -217702289 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 800 243 66 22 chr3 336999 337225 -217699933 - MIR SINE MIR -5 257 22 2351 94 0 0 chr3 337225 337534 -217699624 - AluY SINE Alu -2 309 1 184 267 0 67 chr3 337923 337968 -217699190 - L2 LINE L2 -67 3205 3164 33 56 0 0 chr3 338017 338071 -217699087 + AT_rich Low_complexity Low_complexity 1 54 0 217 250 33 0 chr3 338183 338243 -217698915 + MIR SINE MIR 174 235 -27 21 0 0 0 chr3 338280 338301 -217698857 + AT_rich Low_complexity Low_complexity 1 21 0 290 297 68 27 chr3 338909 339057 -217698101 + MIR SINE MIR 36 189 -73 182 338 70 0 chr3 339062 339133 -217698025 - L2 LINE L2 -35 3237 3162 339 325 88 53 chr3 340039 340322 -217696836 - L2 LINE L2 -399 2915 2623 518 304 196 22 chr3 340982 341344 -217695814 + L2 LINE L2 2887 3311 -2 1067 124 0 0 chr3 342696 342841 -217694317 - FRAM SINE Alu -23 153 9 262 288 25 0 chr3 342856 342947 -217694211 - MIR SINE MIR -61 147 84 727 227 169 68 chr3 343049 343552 -217693606 + MLT1H1 LTR MaLR 2 555 0 1940 144 3 3 chr3 344316 344600 -217692558 + AluSq SINE Alu 1 284 -29 362 21 21 0 chr3 345562 345609 -217691549 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 1934 146 0 4 chr3 345609 345890 -217691268 - AluSx SINE Alu -32 280 1 657 294 89 5 chr3 348780 348994 -217688164 - MIR SINE MIR -17 245 14 185 255 0 43 chr3 349033 349080 -217688078 + L2 LINE L2 3217 3261 -11 414 330 40 30 chr3 351258 351558 -217685600 + MER102b DNA MER1_type 39 341 0 243 364 54 27 chr3 352492 352676 -217684482 - MIR3 SINE MIR -1 207 19 229 216 14 14 chr3 352761 352835 -217684323 + CT-rich Low_complexity Low_complexity 2 75 0 1988 135 4 0 chr3 353857 354158 -217683000 - AluSx SINE Alu 0 302 1 282 353 83 0 chr3 354226 354359 -217682799 - MER5A DNA MER1_type 0 189 46 358 255 167 36 chr3 354410 354602 -217682556 - L2 LINE L2 -69 3244 3028 422 177 0 10 chr3 354803 354899 -217682259 + (CA)n Simple_repeat Simple_repeat 1 95 0 1607 178 52 0 chr3 354921 355207 -217681951 + AluJb SINE Alu 1 301 -11 946 329 36 17 chr3 355288 355699 -217681459 + L3 LINE CR1 946 1364 -213 376 283 155 50 chr3 356268 356490 -217680668 + MER113 DNA MER1_type? 38 235 -286 2223 113 7 0 chr3 356490 356799 -217680359 + AluSx SINE Alu 1 311 -1 376 283 155 50 chr3 356799 357014 -217680144 + MER113 DNA MER1_type? 235 521 0 211 363 39 0 chr3 357307 357409 -217679749 - L2 LINE L2 0 3272 3167 826 230 52 28 chr3 357466 357679 -217679479 - MER20 DNA MER1_type 0 219 2 1160 196 57 75 chr3 359195 359567 -217677591 + MLT1A1 LTR MaLR 1 365 0 188 258 61 15 chr3 359568 359634 -217677524 + L2 LINE L2 2790 2858 -456 636 255 99 28 chr3 359889 360101 -217677057 - LTR16A LTR ERVL -208 242 16 231 286 254 8 chr3 360111 360237 -217676921 + MIR SINE MIR 96 252 -10 371 284 76 56 chr3 360333 360530 -217676628 - L2 LINE L2 0 3313 3113 392 297 77 32 chr3 361000 361155 -217676003 - MIR SINE MIR -89 173 12 360 0 0 0 chr3 361740 361780 -217675378 + (TA)n Simple_repeat Simple_repeat 2 41 0 524 248 16 23 chr3 362514 362643 -217674515 - MIR3 SINE MIR -7 201 74 298 364 43 7 chr3 362690 362830 -217674328 - MIR SINE MIR -96 166 22 369 309 119 66 chr3 362997 363240 -217673918 + L2 LINE L2 3014 3269 -3 1110 248 22 101 chr3 363415 363898 -217673260 + MER34 LTR ERV1 1 432 -110 1751 159 11 0 chr3 363898 364168 -217672990 + AluJo SINE Alu 21 293 -19 1110 248 22 101 chr3 364168 364268 -217672890 + MER34 LTR ERV1 432 538 -4 783 172 30 24 chr3 365515 365684 -217671474 + L1MA10 LINE L1 6163 6332 -2 195 360 67 20 chr3 368690 368840 -217668318 - MIR SINE MIR -27 235 79 204 97 0 0 chr3 371444 371475 -217665683 + (TG)n Simple_repeat Simple_repeat 2 32 0 2304 71 0 0 chr3 371512 371828 -217665330 - AluY SINE Alu 0 316 1 195 129 0 0 chr3 371936 371967 -217665191 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 6036 140 14 5 chr3 373139 374524 -217662634 + L1PB1 LINE L1 4745 6143 -8 35 0 0 0 chr3 374524 374559 -217662599 + AT_rich Low_complexity Low_complexity 1 35 0 301 338 79 12 chr3 374710 374931 -217662227 + MIR SINE MIR 6 242 -20 2190 107 9 25 chr3 375184 375502 -217661656 - AluSq SINE Alu 0 313 1 304 393 61 9 chr3 376344 376573 -217660585 - MIR SINE MIR -8 254 14 1855 135 63 44 chr3 376697 377061 -217660097 - THE1C LTR MaLR -4 371 1 221 333 48 67 chr3 377110 377275 -217659883 + MIR3 SINE MIR 38 199 -9 207 183 100 17 chr3 377809 377869 -217659289 + L2 LINE L2 3208 3272 0 322 156 104 0 chr3 377871 377948 -217659210 + MIR SINE MIR 64 148 -114 602 198 39 82 chr3 378662 378844 -217658314 - MIR SINE MIR -11 251 78 1234 0 7 0 chr3 378989 379128 -217658030 + L1PA2 LINE L1 6003 6142 -13 213 39 0 0 chr3 379132 379158 -217658000 + (TAA)n Simple_repeat Simple_repeat 2 27 0 189 200 67 50 chr3 379302 379362 -217657796 - L2 LINE L2 -1 3312 3252 327 191 0 0 chr3 379900 379968 -217657190 + (CATA)n Simple_repeat Simple_repeat 2 69 0 533 261 72 26 chr3 380265 380571 -217656587 + L1ME4a LINE L1 5691 6010 -111 2275 120 3 0 chr3 382267 382576 -217654582 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr3 382888 382910 -217654248 + AT_rich Low_complexity Low_complexity 1 22 0 184 370 19 37 chr3 383477 383585 -217653573 - MIR SINE MIR -123 139 34 225 0 0 0 chr3 385640 385665 -217651493 + (TG)n Simple_repeat Simple_repeat 2 26 0 234 206 0 0 chr3 386126 386189 -217650969 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 215 204 0 0 chr3 387102 387146 -217650012 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 320 33 40 chr3 387407 387557 -217649601 + L2 LINE L2 3164 3312 -1 1737 174 7 0 chr3 387611 387899 -217649259 - AluSx SINE Alu -22 290 1 823 132 0 76 chr3 387902 388046 -217649112 - AluSq/x SINE Alu -180 133 1 214 132 38 0 chr3 388088 388141 -217649017 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 0 0 0 chr3 388141 388165 -217648993 + AT_rich Low_complexity Low_complexity 1 24 0 2058 105 10 27 chr3 388165 388460 -217648698 - AluSx SINE Alu -22 290 1 234 206 0 0 chr3 389668 389731 -217647427 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 390192 390217 -217646941 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 392272 392380 -217644778 + MIR SINE MIR 34 139 -123 22 0 0 0 chr3 392947 392969 -217644189 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 393281 393590 -217643568 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 395287 395593 -217641565 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 395890 395958 -217641200 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 396496 396556 -217640602 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 396700 396726 -217640432 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 396730 396869 -217640289 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 397014 397196 -217639962 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 397910 397987 -217639171 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 397989 398049 -217639109 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 398583 398748 -217638410 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 398797 399161 -217637997 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 399285 399514 -217637644 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 400356 400674 -217636484 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 400927 401148 -217636010 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 401299 401334 -217635824 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 401334 402719 -217634439 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 403889 403920 -217633238 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 404028 404344 -217632814 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 404381 404412 -217632746 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 407016 407166 -217629992 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 410172 410341 -217626817 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 411588 411688 -217625470 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 411688 411958 -217625200 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 411958 412441 -217624717 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 412616 412859 -217624299 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 413026 413166 -217623992 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 413213 413342 -217623816 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 414075 414115 -217623043 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 414700 414855 -217622303 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 415325 415522 -217621636 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 415618 415744 -217621414 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 415754 415966 -217621192 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 416221 416287 -217620871 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 416288 416660 -217620498 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 418176 418389 -217618769 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 418446 418548 -217618610 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 418841 419056 -217618102 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 419056 419365 -217617793 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 419365 419587 -217617571 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 420156 420567 -217616591 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 420648 420934 -217616224 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 420956 421052 -217616106 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 421253 421444 -217615714 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 421495 421628 -217615530 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 421696 421997 -217615161 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 423019 423093 -217614065 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 423178 423362 -217613796 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 424161 424461 -217612697 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 426640 426687 -217610471 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 426726 426940 -217610218 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 429830 430111 -217607047 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 430111 430158 -217607000 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 431120 431404 -217605754 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 432168 432671 -217604487 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 432773 432864 -217604294 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 432879 433024 -217604134 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 434376 434738 -217602420 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 435398 435681 -217601477 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 436663 436811 -217600347 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 437419 437440 -217599718 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 437477 437537 -217599621 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 437649 437703 -217599455 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 437752 437797 -217599361 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 438186 438495 -217598663 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 438495 438721 -217598437 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 440851 440872 -217596286 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 442457 442522 -217594636 + (CA)n Simple_repeat Simple_repeat 2 68 0 771 270 47 9 chr3 442572 442783 -217594375 + MER20 DNA MER1_type 1 219 0 931 282 78 54 chr3 443063 443138 -217594020 - L1MEc LINE L1 -3921 2475 2403 2318 113 0 0 chr3 443138 443438 -217593720 - AluSx SINE Alu -12 300 1 931 282 78 54 chr3 443438 444267 -217592891 - L1MEc LINE L1 -3993 2403 1549 527 221 29 0 chr3 444267 444371 -217592787 - U6 snRNA snRNA 0 107 1 201 147 0 0 chr3 445080 445114 -217592044 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 525 229 52 81 chr3 445228 445438 -217591720 - MER20 DNA MER1_type -15 204 1 510 287 145 18 chr3 445591 445873 -217591285 - L2 LINE L2 0 3313 2996 505 278 126 36 chr3 447094 447317 -217589841 + MIR SINE MIR 7 249 -13 4283 105 21 10 chr3 447790 447907 -217589251 - MER41B LTR ERV1 0 635 521 2374 102 0 6 chr3 447907 448220 -217588938 + AluSx SINE Alu 1 311 -1 4283 105 21 10 chr3 448220 448730 -217588428 - MER41B LTR ERV1 -114 521 1 35 54 0 0 chr3 448762 448818 -217588340 + AT_rich Low_complexity Low_complexity 1 56 0 374 308 43 0 chr3 448818 448935 -217588223 + L2 LINE L2 3144 3265 -7 2252 106 0 7 chr3 449343 449646 -217587512 - AluSx SINE Alu -11 301 1 260 77 0 0 chr3 450967 451006 -217586152 - MADE1 DNA Mariner 0 80 42 1019 191 19 10 chr3 451066 451275 -217585883 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 451510 451571 -217585587 - Alu SINE Alu -9 302 242 1825 254 21 14 chr3 451572 452009 -217585149 + MER82 DNA MER2_type 212 651 -2 268 294 76 11 chr3 452171 452263 -217584895 + L2 LINE L2 3175 3272 0 1243 140 0 0 chr3 452363 452542 -217584616 + AluSg/x SINE Alu 130 308 -2 22 0 0 0 chr3 452618 452640 -217584518 + AT_rich Low_complexity Low_complexity 1 22 0 272 89 0 22 chr3 453004 453049 -217584109 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1841 171 97 8 chr3 454159 454550 -217582608 - MSTB LTR MaLR 0 426 1 1789 142 7 23 chr3 454798 455100 -217582058 + AluSx SINE Alu 1 297 -15 230 54 0 0 chr3 455384 455421 -217581737 - AluSq SINE Alu -4 295 259 1058 154 6 6 chr3 455422 455591 -217581567 - AluSq SINE Alu -95 218 50 1770 168 0 3 chr3 455615 455906 -217581252 + AluJb SINE Alu 1 290 -22 341 154 0 0 chr3 456459 456511 -217580647 - L2 LINE L2 -1 3312 3261 194 152 0 22 chr3 456625 456671 -217580487 + CT-rich Low_complexity Low_complexity 2 46 0 227 337 131 58 chr3 457866 458264 -217578894 - MLT1K LTR MaLR -22 566 140 975 196 0 0 chr3 458656 458829 -217578329 + AluJb SINE Alu 135 307 -5 220 295 209 8 chr3 460629 460758 -217576400 - L2 LINE L2 -4 3309 3155 271 400 22 22 chr3 462134 462269 -217574889 - L2 LINE L2 -4 3268 3134 192 322 164 0 chr3 462509 462661 -217574497 - L2 LINE L2 -400 2914 2738 16224 94 11 7 chr3 463330 466493 -217570665 - L1PA7 LINE L1 -1 6153 2978 220 189 44 22 chr3 467217 467307 -217569851 + (TA)n Simple_repeat Simple_repeat 2 93 0 24 67 0 0 chr3 467421 467466 -217569692 + AT_rich Low_complexity Low_complexity 1 45 0 283 210 65 0 chr3 470102 470240 -217566918 + (TA)n Simple_repeat Simple_repeat 2 148 0 1235 216 61 22 chr3 470946 471393 -217565765 - AluJo SINE Alu 0 458 1 871 206 79 14 chr3 471741 471955 -217565203 + AluJo SINE Alu 1 228 -84 3789 175 36 1 chr3 472155 472894 -217564264 - L1MC1 LINE L1 -9 6324 5560 482 261 36 12 chr3 473014 473179 -217563979 - MER20B DNA MER1_type -604 179 11 397 199 0 3 chr3 473304 473403 -217563755 + L1ME3 LINE L1 6066 6163 -1 213 39 0 0 chr3 475876 475902 -217561256 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 453 36 0 0 chr3 475901 475956 -217561202 + (TA)n Simple_repeat Simple_repeat 1 55 0 877 261 123 64 chr3 476012 476525 -217560633 - MLT1H LTR MaLR -6 543 1 192 277 213 19 chr3 476775 476930 -217560228 - MIR SINE MIR -65 197 13 3191 130 74 42 chr3 477341 477934 -217559224 - LTR9 LTR ERV1 0 612 1 386 103 176 0 chr3 477959 478027 -217559131 + MADE1 DNA Mariner 1 80 0 976 110 65 0 chr3 478220 478375 -217558783 + L1MA3 LINE L1 6141 6305 0 1215 148 10 5 chr3 480536 480738 -217556420 + L1PA16 LINE L1 5784 5986 -180 1146 171 9 14 chr3 480763 480979 -217556179 + L1PA16 LINE L1 5951 6165 -1 186 43 0 0 chr3 481177 481200 -217555958 + (A)n Simple_repeat Simple_repeat 1 23 0 930 231 0 0 chr3 482127 482300 -217554858 + FAM SINE Alu 1 173 -2 253 347 13 13 chr3 482597 482747 -217554411 + MER113 DNA MER1_type? 336 485 -36 193 347 137 0 chr3 482765 482860 -217554298 - L3 LINE CR1 -23 1554 1447 22 56 0 0 chr3 483883 483919 -217553239 + AT_rich Low_complexity Low_complexity 1 36 0 624 248 7 7 chr3 483965 484110 -217553048 + Charlie1a DNA MER1_type 9 153 -1302 1262 160 106 13 chr3 484112 484216 -217552942 + AluJo SINE Alu 1 94 -218 356 55 18 0 chr3 484216 484271 -217552887 + (TA)n Simple_repeat Simple_repeat 1 56 0 1262 160 106 13 chr3 484271 484403 -217552755 + AluJo SINE Alu 94 259 -53 2659 222 113 35 chr3 484403 485319 -217551839 + Charlie1a DNA MER1_type 191 1178 -277 760 188 0 14 chr3 485320 485464 -217551694 + FRAM SINE Alu 20 161 -15 794 197 89 37 chr3 485467 485736 -217551422 + Charlie1a DNA MER1_type 1168 1450 -5 241 250 83 0 chr3 485739 485811 -217551347 - MIR3 SINE MIR -46 162 85 279 0 0 0 chr3 486189 486220 -217550938 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 447 218 0 0 chr3 486224 486311 -217550847 - AluJ SINE Alu -26 286 200 762 196 0 14 chr3 486318 486461 -217550697 - AluJ SINE Alu -171 141 1 30 0 0 0 chr3 487221 487251 -217549907 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 488146 488174 -217548984 + AT_rich Low_complexity Low_complexity 1 28 0 323 310 115 19 chr3 488950 489263 -217547895 + L1ME4a LINE L1 5514 5856 -265 36 0 0 0 chr3 489473 489509 -217547649 + AT_rich Low_complexity Low_complexity 1 36 0 219 320 80 40 chr3 490070 490195 -217546963 + MIR SINE MIR 59 188 -74 450 254 0 51 chr3 490409 490527 -217546631 - MLT1I LTR MaLR -213 196 85 278 258 0 0 chr3 491132 491198 -217545960 + GA-rich Low_complexity Low_complexity 3 68 0 297 331 7 0 chr3 491259 491404 -217545754 + L1ME LINE L1 2217 2362 -3784 442 290 59 5 chr3 491450 491671 -217545487 + L1ME LINE L1 2473 2705 -3441 718 230 33 53 chr3 491715 492076 -217545082 + L1ME LINE L1 2795 3148 -2998 350 290 82 51 chr3 492075 492489 -217544669 + L1ME LINE L1 4419 4845 -1301 * 186 103 0 0 chr3 492524 492553 -217544605 + (TC)n Simple_repeat Simple_repeat 2 30 0 232 315 22 0 chr3 492573 492665 -217544493 + L1ME LINE L1 4918 5011 -1135 1512 174 0 78 chr3 492746 492780 -217544378 - AluJo SINE Alu -2 310 275 279 0 0 0 chr3 492780 492811 -217544347 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1512 174 0 78 chr3 492811 493110 -217544048 - AluJo SINE Alu -37 275 3 309 337 70 30 chr3 493375 493805 -217543353 + L1ME LINE L1 5370 5816 -346 23 0 0 0 chr3 494693 494716 -217542442 + AT_rich Low_complexity Low_complexity 1 23 0 265 306 72 0 chr3 495190 495301 -217541857 - L2 LINE L2 -6 3307 3189 198 0 0 0 chr3 495516 495538 -217541620 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 929 184 0 0 chr3 495541 495693 -217541465 - AluJb SINE Alu -26 286 135 1780 190 40 52 chr3 495695 495774 -217541384 - L1MB7 LINE L1 -10 6174 6096 710 217 0 0 chr3 495774 495903 -217541255 - FLAM_A SINE Alu -1 132 4 1780 190 40 52 chr3 495903 496301 -217540857 - L1MB7 LINE L1 -88 6096 5703 443 324 97 8 chr3 497495 497733 -217539425 - MIR SINE MIR -3 259 1 2135 49 0 28 chr3 498751 498950 -217538208 - AluY SINE Alu -2 309 119 5149 52 12 12 chr3 498950 499617 -217537541 - L1PA5 LINE L1 -13 6141 5475 2135 49 0 28 chr3 499617 499701 -217537457 - AluY SINE Alu -192 119 34 30 27 0 0 chr3 499892 499929 -217537229 + AT_rich Low_complexity Low_complexity 1 37 0 23 78 0 0 chr3 504779 504830 -217532328 + AT_rich Low_complexity Low_complexity 1 51 0 349 333 23 0 chr3 504959 505088 -217532070 + MER103 DNA DNA 24 155 -11 27 0 0 0 chr3 505909 505936 -217531222 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr3 506037 506061 -217531097 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr3 506368 506403 -217530755 + AT_rich Low_complexity Low_complexity 1 35 0 724 203 0 0 chr3 506434 506557 -217530601 + FRAM SINE Alu 22 144 -32 208 51 26 26 chr3 506557 506596 -217530562 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 1905 146 0 0 chr3 507012 507353 -217529805 - AluY SINE Alu 0 341 1 208 305 84 11 chr3 509779 509874 -217527284 + MIR SINE MIR 63 164 -98 21 57 0 0 chr3 510890 510925 -217526233 + AT_rich Low_complexity Low_complexity 1 35 0 189 350 41 16 chr3 511509 511632 -217525526 + MIR3 SINE MIR 75 200 -8 246 330 30 20 chr3 514589 514689 -217522469 + MIR3 SINE MIR 81 181 -27 27 29 0 0 chr3 515755 515789 -217521369 + AT_rich Low_complexity Low_complexity 1 34 0 252 59 0 0 chr3 515997 516031 -217521127 + (CA)n Simple_repeat Simple_repeat 2 35 0 29 47 0 0 chr3 516558 516601 -217520557 + AT_rich Low_complexity Low_complexity 1 43 0 226 328 0 0 chr3 516711 516778 -217520380 + Zaphod DNA AcHobo 1 67 -3964 509 286 128 17 chr3 516909 517199 -217519959 + MER115 DNA AcHobo 370 691 -2 230 352 28 0 chr3 517212 517320 -217519838 + MIR SINE MIR 40 150 -112 766 231 55 39 chr3 517382 517637 -217519521 + MIR SINE MIR 4 262 0 200 231 58 0 chr3 517913 517965 -217519193 - MIR SINE MIR -77 185 131 * 636 277 190 34 chr3 517963 518656 -217518502 - L2 LINE L2 0 3313 2498 212 351 72 9 chr3 518647 518758 -217518400 - MIR SINE MIR -68 140 23 * 321 309 123 25 chr3 518974 519136 -217518022 - MIR SINE MIR -54 208 31 1733 206 65 54 chr3 519617 520113 -217517045 - MLT1D LTR MaLR 0 505 5 286 331 32 16 chr3 520161 520285 -217516873 - L2 LINE L2 -6 3266 3141 379 115 57 8 chr3 520524 520646 -217516512 + (TA)n Simple_repeat Simple_repeat 1 128 0 225 359 58 6 chr3 520705 520861 -217516297 + MIR SINE MIR 99 262 0 1954 146 19 10 chr3 520864 521173 -217515985 - AluSx SINE Alu 0 312 1 4242 20 0 2 chr3 522161 522657 -217514501 - L1PA2 LINE L1 -1 6154 5660 3730 18 0 0 chr3 522657 523099 -217514059 + L1P LINE L1 4857 5298 -848 831 186 6 27 chr3 523974 524157 -217513001 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 525690 525756 -217511402 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 526263 526511 -217510647 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 526944 527059 -217510099 - L2 LINE L2 -8 3305 3190 2212 121 0 0 chr3 527759 528056 -217509102 + AluSx SINE Alu 1 297 -15 527 298 13 77 chr3 528923 529158 -217508000 + MIR SINE MIR 15 234 -28 1275 142 0 10 chr3 529235 529439 -217507719 - L1PA8A LINE L1 -3 6443 6242 26104 138 9 17 chr3 529441 535624 -217501534 - L1PA8A LINE L1 -250 6196 2 475 299 137 10 chr3 537236 537433 -217499725 - MIR SINE MIR -10 252 31 328 327 9 0 chr3 537710 537820 -217499338 + MLT1I LTR MaLR 281 391 -18 277 348 106 12 chr3 537873 538034 -217499124 - MER5A DNA MER1_type -13 176 1 263 382 21 21 chr3 538914 539058 -217498100 - MER5A DNA MER1_type -44 145 2 303 306 104 22 chr3 540115 540249 -217496909 + LTR33 LTR ERVL 3 147 -374 22 0 0 0 chr3 541327 541349 -217495809 + AT_rich Low_complexity Low_complexity 1 22 0 353 345 76 29 chr3 542573 542744 -217494414 - MER5A DNA MER1_type -3 186 8 4494 155 20 27 chr3 542882 543667 -217493491 - LTR39 LTR ERV1 -2 781 2 26 0 0 0 chr3 545050 545076 -217492082 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 545716 545738 -217491420 + AT_rich Low_complexity Low_complexity 1 22 0 183 376 56 16 chr3 545893 546018 -217491140 - MIR SINE MIR -76 186 57 2226 124 0 0 chr3 547118 547416 -217489742 + AluSg SINE Alu 1 298 -12 1126 146 34 0 chr3 548391 548597 -217488561 + L1MA8 LINE L1 6067 6279 -12 25 0 0 0 chr3 549102 549127 -217488031 + AT_rich Low_complexity Low_complexity 1 25 0 2348 92 3 6 chr3 549836 550150 -217487008 + AluSp SINE Alu 1 313 0 201 300 38 12 chr3 551107 551187 -217485971 - L2 LINE L2 -5 3308 3227 437 214 161 0 chr3 551815 551927 -217485231 + MIR SINE MIR 133 262 0 2012 132 10 16 chr3 552803 553106 -217484052 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr3 553166 553188 -217483970 + AT_rich Low_complexity Low_complexity 1 22 0 856 270 23 0 chr3 553499 553714 -217483444 + MER58A DNA MER1_type 1 220 -4 282 353 131 18 chr3 554403 554561 -217482597 - MIR SINE MIR -10 252 61 2105 55 0 0 chr3 554561 554818 -217482340 + AluY SINE Alu 40 296 -15 282 353 131 18 chr3 554818 554880 -217482278 - MIR SINE MIR -201 61 7 32 0 0 0 chr3 555125 555157 -217482001 + AT_rich Low_complexity Low_complexity 1 32 0 311 322 29 41 chr3 555267 555438 -217481720 - L1 LINE L1 -1854 4292 4124 256 214 95 24 chr3 555501 555585 -217481573 + MIR SINE MIR 30 119 -89 202 387 13 0 chr3 555668 555743 -217481415 + L2 LINE L2 3182 3257 -15 374 267 112 64 chr3 555957 556144 -217481014 + MIR SINE MIR 2 197 -65 453 108 12 48 chr3 557262 557345 -217479813 - MADE1 DNA Mariner 0 80 1 24 0 0 0 chr3 558907 558931 -217478227 + AT_rich Low_complexity Low_complexity 1 24 0 2284 89 7 3 chr3 560931 561233 -217475925 + AluSq SINE Alu 2 304 -9 1138 126 11 0 chr3 562220 562394 -217474764 + AluSg/x SINE Alu 131 306 -6 1723 199 0 0 chr3 562471 562772 -217474386 - AluSx SINE Alu -11 301 1 22 35 0 0 chr3 564301 564330 -217472828 + AT_rich Low_complexity Low_complexity 1 29 0 255 125 0 0 chr3 564366 564406 -217472752 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1569 239 43 108 chr3 564439 564997 -217472161 - MLT1F1 LTR MaLR 0 567 24 810 113 0 0 chr3 565013 565119 -217472039 + AluSg/x SINE Alu 177 282 -28 195 114 0 0 chr3 565124 565159 -217471999 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 235 180 20 0 chr3 565564 565614 -217471544 - MLT1I LTR MaLR -1 408 358 597 311 97 12 chr3 565667 565915 -217471243 - MLT1I LTR MaLR -140 269 1 1980 189 3 3 chr3 566381 566746 -217470412 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 567790 567812 -217469346 + AT_rich Low_complexity Low_complexity 1 22 0 256 312 37 37 chr3 569956 570065 -217467093 + MIR SINE MIR 59 167 -95 54 84 0 0 chr3 571087 571218 -217465940 + AT_rich Low_complexity Low_complexity 1 131 0 606 177 39 23 chr3 571408 571538 -217465620 + FLAM_C SINE Alu 1 132 -1 251 316 221 6 chr3 571542 571700 -217465458 - MIR SINE MIR -43 219 28 778 357 116 27 chr3 572680 573386 -217463772 + L2 LINE L2 2112 2880 -434 272 282 68 61 chr3 573744 573907 -217463251 + LTR16C LTR ERVL 326 489 -2 362 383 19 13 chr3 574129 574283 -217462875 + L2 LINE L2 3118 3272 0 1028 294 137 19 chr3 574352 575198 -217461960 + L2 LINE L2 2355 3312 -1 21 57 0 0 chr3 575596 575631 -217461527 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 575708 575730 -217461428 + AT_rich Low_complexity Low_complexity 1 22 0 241 275 0 14 chr3 576318 576387 -217460771 + MIR SINE MIR 174 241 -21 562 274 104 0 chr3 576655 576819 -217460339 - MER5A DNA MER1_type -8 181 1 324 0 0 0 chr3 578377 578413 -217458745 + (CA)n Simple_repeat Simple_repeat 1 36 0 3271 159 17 22 chr3 579374 579958 -217457200 + L1PA16 LINE L1 5493 6073 -93 613 254 122 0 chr3 580354 580551 -217456607 + MER58A DNA MER1_type 2 222 -2 657 290 106 5 chr3 581783 582000 -217455158 + MIR SINE MIR 8 246 -16 302 263 68 79 chr3 582153 582343 -217454815 + MLT1L LTR MaLR 207 394 -221 23 54 0 0 chr3 582669 582706 -217454452 + AT_rich Low_complexity Low_complexity 1 37 0 1613 154 10 61 chr3 582933 583245 -217453913 + AluSq SINE Alu 1 296 -17 670 165 31 16 chr3 583683 583810 -217453348 + FLAM_C SINE Alu 1 129 -4 567 289 59 30 chr3 584419 584733 -217452425 + MLT1I LTR MaLR 56 405 -4 360 350 85 0 chr3 584760 584960 -217452198 + L2 LINE L2 1753 1969 -1345 563 310 78 52 chr3 584960 585347 -217451811 + L2 LINE L2 2576 2972 -342 1477 267 95 40 chr3 585395 585890 -217451268 + MLT1E LTR MaLR 35 556 -37 192 346 51 0 chr3 585951 586029 -217451129 + L2 LINE L2 2992 3073 -240 227 263 126 53 chr3 586087 586182 -217450976 + MLT1J LTR MaLR 1 102 -409 272 315 117 9 chr3 586182 586293 -217450865 + MIR SINE MIR 140 262 0 189 200 140 0 chr3 586473 586523 -217450635 - L2 LINE L2 -8 3264 3208 473 290 58 0 chr3 587005 587143 -217450015 - MIR SINE MIR -17 245 100 728 223 38 0 chr3 588243 588400 -217448758 + MER3 DNA MER1_type 37 199 -10 240 304 88 35 chr3 591006 591177 -217445981 - MLT1L LTR MaLR -229 386 207 450 302 23 0 chr3 591207 591336 -217445822 - MLT1L LTR MaLR -353 262 131 379 270 0 11 chr3 591443 591532 -217445626 - MER2 DNA MER2_type -250 95 8 898 313 79 25 chr3 592602 593034 -217444124 + LTR16B LTR ERVL 8 462 -2 21 0 0 0 chr3 593077 593098 -217444060 + AT_rich Low_complexity Low_complexity 1 21 0 596 328 69 33 chr3 593113 593564 -217443594 - L1MC4a LINE L1 -1969 5839 5373 195 246 98 0 chr3 594862 594923 -217442235 - MIR SINE MIR -27 235 169 846 262 81 89 chr3 594945 595338 -217441820 + LTR16B LTR ERVL 1 390 -74 421 101 0 38 chr3 595344 595423 -217441735 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 314 285 16 41 chr3 595453 595490 -217441668 + LTR16B LTR ERVL 345 381 -83 1741 148 0 0 chr3 595490 595754 -217441404 - AluSx SINE Alu -44 268 5 314 285 16 41 chr3 595754 595839 -217441319 + LTR16B LTR ERVL 381 464 0 732 309 129 35 chr3 596179 596661 -217440497 + MLT1H LTR MaLR 18 544 -5 851 308 144 13 chr3 596689 597222 -217439936 + MLT1L LTR MaLR 1 603 -12 21 0 0 0 chr3 597500 597521 -217439637 + AT_rich Low_complexity Low_complexity 1 21 0 373 216 216 8 chr3 599094 599228 -217437930 + MLT1H LTR MaLR 1 162 -387 323 293 79 43 chr3 599400 599653 -217437505 + MLT1H LTR MaLR 294 555 0 4851 120 3 0 chr3 600491 601208 -217435950 + L1PA11 LINE L1 5455 6173 -1 309 67 0 0 chr3 601515 601560 -217435598 - MLT2A1 LTR ERVL -10 434 390 378 267 0 0 chr3 601561 601651 -217435507 - L1MC4 LINE L1 -1339 6703 6614 279 173 0 0 chr3 601653 601705 -217435453 + (CA)n Simple_repeat Simple_repeat 2 53 0 821 65 0 0 chr3 601706 601813 -217435345 - HERVL LTR ERVL -1239 4415 4309 319 86 69 26 chr3 601813 601929 -217435229 + (TA)n Simple_repeat Simple_repeat 1 121 0 2648 86 35 15 chr3 601929 602326 -217434832 - MLT2A1 LTR ERVL -39 405 1 41436 72 8 13 chr3 602326 608006 -217429152 - HERVL-A1-A1 LTR ERVL 0 5654 1 3240 71 40 0 chr3 608009 608434 -217428724 - MLT2A1 LTR ERVL -2 442 1 180 111 0 0 chr3 608535 608562 -217428596 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1375 168 50 42 chr3 609094 609356 -217427802 + AluJb SINE Alu 1 264 -48 603 86 19 9 chr3 610662 610767 -217426391 + (TA)n Simple_repeat Simple_repeat 1 106 0 24 67 0 0 chr3 610796 610841 -217426317 + AT_rich Low_complexity Low_complexity 1 45 0 809 243 0 0 chr3 610841 610993 -217426165 + AluJb SINE Alu 129 280 -32 1969 149 39 3 chr3 611049 611384 -217425774 - MER7A DNA MER2_type 0 346 2 486 266 65 26 chr3 612037 612191 -217424967 - MIR SINE MIR 0 262 103 258 210 60 60 chr3 613240 613340 -217423818 + MIR SINE MIR 100 199 -63 230 295 162 0 chr3 613563 613668 -217423490 - MIR SINE MIR -101 161 40 387 152 27 18 chr3 614174 614286 -217422872 + MER96B DNA MER1_type? 66 178 -239 270 183 0 0 chr3 614418 614489 -217422669 + (TA)n Simple_repeat Simple_repeat 2 72 0 296 284 0 0 chr3 614497 614578 -217422580 + MER96B DNA MER1_type? 330 410 -7 562 306 38 16 chr3 614743 614929 -217422229 - MIR SINE MIR -69 193 4 1687 198 18 3 chr3 615382 615721 -217421437 - MER2 DNA MER2_type 0 344 1 2102 141 3 0 chr3 615721 616019 -217421139 - AluSx SINE Alu -13 299 1 218 281 83 0 chr3 616995 617091 -217420067 + MIR SINE MIR 110 213 -49 469 113 0 0 chr3 617217 617279 -217419879 + AluSg/x SINE Alu 217 278 -34 210 336 97 9 chr3 617657 617770 -217419388 + L2 LINE L2 3190 3312 -1 1612 162 0 35 chr3 619114 619398 -217417760 + AluJo SINE Alu 6 279 -33 22 0 0 0 chr3 621984 622006 -217415152 + AT_rich Low_complexity Low_complexity 1 22 0 592 271 52 29 chr3 622253 622463 -217414695 + LTR33 LTR ERVL 6 220 -301 1366 273 112 12 chr3 622555 623064 -217414094 - MLT1G1 LTR MaLR 0 595 36 274 270 11 11 chr3 623136 623225 -217413933 + LTR33 LTR ERVL 433 521 0 1058 240 78 18 chr3 624300 624684 -217412474 - LTR50 LTR ERVL -3 792 386 255 211 42 0 chr3 624815 624886 -217412272 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 332 326 0 36 chr3 625090 625228 -217411930 - MIR SINE MIR -12 250 118 266 217 42 192 chr3 625340 625460 -217411698 - MER91A DNA MER1_type -5 191 90 621 339 12 0 chr3 625467 625632 -217411526 - MER91A DNA MER1_type -28 168 2 1064 244 94 77 chr3 625782 626188 -217410970 - MLT1F LTR MaLR -3 539 123 2161 109 0 32 chr3 626188 626499 -217410659 - AluSg SINE Alu -9 301 1 1064 244 94 77 chr3 626499 626547 -217410611 - MLT1F LTR MaLR -419 123 77 21 0 0 0 chr3 626740 626761 -217410397 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 627384 627405 -217409753 + AT_rich Low_complexity Low_complexity 1 21 0 300 91 0 0 chr3 628920 628964 -217408194 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 334 274 37 44 chr3 628995 629130 -217408028 + MER117 DNA MER1_type 64 197 0 2002 153 132 5 chr3 629158 629536 -217407622 - MSTA LTR MaLR -1 427 2 228 359 11 22 chr3 629598 629690 -217407468 + MER5B DNA MER1_type 88 178 0 22 0 0 0 chr3 629716 629738 -217407420 + AT_rich Low_complexity Low_complexity 1 22 0 749 129 0 0 chr3 629741 629857 -217407301 - L1MA2 LINE L1 -9 6295 6180 750 165 8 0 chr3 630422 630543 -217406615 - FLAM_C SINE Alu -11 122 1 357 93 0 0 chr3 630561 630615 -217406543 + (TG)n Simple_repeat Simple_repeat 1 54 0 204 308 0 0 chr3 630652 630704 -217406454 + CT-rich Low_complexity Low_complexity 3 54 0 207 69 0 0 chr3 630706 630735 -217406423 + (CA)n Simple_repeat Simple_repeat 1 29 0 2158 169 54 7 chr3 631470 631878 -217405280 + MSTA LTR MaLR 1 427 -1 6375 186 132 9 chr3 631883 633286 -217403872 + MSTA-int LTR MaLR 5 1580 0 2137 152 53 22 chr3 633286 633661 -217403497 + MSTA LTR MaLR 1 392 -36 2003 131 0 29 chr3 633661 633975 -217403183 - AluSg SINE Alu -5 305 1 2137 152 53 22 chr3 633975 634014 -217403144 + MSTA LTR MaLR 392 428 0 1497 182 7 107 chr3 634014 634427 -217402731 - MLT1B LTR MaLR -16 374 3 2811 207 23 58 chr3 634608 635356 -217401802 - MER72 LTR ERV1 0 722 1 237 250 25 0 chr3 635399 635479 -217401679 - HsTC2 DNA Tc2 0 1898 1817 329 335 30 6 chr3 635626 635793 -217401365 + L1MEd LINE L1 447 617 -5502 946 236 38 5 chr3 635916 636128 -217401030 + MER58A DNA MER1_type 6 224 0 573 278 25 6 chr3 636133 636295 -217400863 - MIR SINE MIR -56 206 42 243 87 87 22 chr3 636350 636396 -217400762 + L2 LINE L2 3265 3313 0 264 250 0 42 chr3 636410 636482 -217400676 - MIR SINE MIR -176 86 18 2331 64 0 32 chr3 636944 637257 -217399901 - AluY SINE Alu -8 303 1 351 206 14 14 chr3 637465 637538 -217399620 - MIR SINE MIR -188 74 2 282 369 27 0 chr3 637987 638136 -217399022 + L2 LINE L2 2053 2205 -1109 440 295 7 40 chr3 638485 638634 -217398524 - MER5B DNA MER1_type -34 144 1 592 199 46 8 chr3 639060 639191 -217397967 - MER20 DNA MER1_type -21 198 63 495 197 120 0 chr3 639191 639308 -217397850 + FLAM_A SINE Alu 11 141 -1 319 278 139 56 chr3 639497 639841 -217397317 + MLT1H LTR MaLR 108 491 -58 7267 121 9 10 chr3 639841 641743 -217395415 + L1PA8A LINE L1 4220 6129 -2 319 278 139 56 chr3 641743 641794 -217395364 + MLT1H LTR MaLR 491 536 -13 766 255 91 26 chr3 642020 642251 -217394907 - MIR SINE MIR -14 248 3 1174 203 28 46 chr3 643656 643982 -217393176 + MER33 DNA MER1_type 5 324 0 1028 178 26 4 chr3 644184 644448 -217392710 + AluSx SINE Alu 1 270 -42 286 161 69 0 chr3 644450 644537 -217392621 + AluSg/x SINE Alu 176 268 -32 286 161 69 0 chr3 644539 644626 -217392532 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 644628 644715 -217392443 + AluSg/x SINE Alu 176 268 -32 340 138 69 0 chr3 644717 644804 -217392354 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 644806 644893 -217392265 + AluSg/x SINE Alu 176 268 -32 329 138 69 0 chr3 644895 644982 -217392176 + AluSg/x SINE Alu 178 270 -32 290 149 69 0 chr3 644984 645071 -217392087 + AluSg/x SINE Alu 176 268 -32 329 149 64 0 chr3 645073 645167 -217391991 + AluSg/x SINE Alu 176 275 -25 23 0 0 0 chr3 645186 645209 -217391949 + GC_rich Low_complexity Low_complexity 1 23 0 356 288 83 51 chr3 645386 645625 -217391533 - MIR SINE MIR -6 256 8 523 320 115 4 chr3 646278 646512 -217390646 - MIR SINE MIR -2 260 1 2158 91 0 10 chr3 647284 647593 -217389565 - L1PA13 LINE L1 -2 6161 5856 319 247 213 20 chr3 648144 648294 -217388864 - MER5A DNA MER1_type 0 189 11 1139 330 52 7 chr3 648324 648911 -217388247 + L2 LINE L2 2459 3070 -243 705 270 107 67 chr3 648913 649498 -217387660 - MLT1G1 LTR MaLR 0 595 1 384 247 190 17 chr3 649519 649693 -217387465 + L2 LINE L2 3106 3309 -4 187 297 0 16 chr3 649758 649822 -217387336 + MIR SINE MIR 187 249 -13 403 267 0 0 chr3 650110 650200 -217386958 + MIR SINE MIR 101 190 -72 2068 181 8 3 chr3 650249 650620 -217386538 + MER93b LTR ERV1 1 373 0 221 160 217 19 chr3 651056 651162 -217385996 + MIR SINE MIR 125 251 -11 1531 157 91 49 chr3 651551 651901 -217385257 - MLT1A1 LTR MaLR 0 365 1 445 125 0 0 chr3 652700 652797 -217384361 + AluS SINE Alu 221 317 0 1041 238 94 3 chr3 653291 653598 -217383560 + MER2 DNA MER2_type 1 335 -10 492 293 157 58 chr3 654552 654928 -217382230 + MLT1J2 LTR MaLR 1 413 -37 297 273 27 55 chr3 654986 655096 -217382062 - MIR SINE MIR -31 231 125 724 233 57 5 chr3 656254 656447 -217380711 - MER3 DNA MER1_type -2 207 5 1080 204 33 49 chr3 656459 656731 -217380427 + MER33 DNA MER1_type 1 269 -2316 2030 148 0 0 chr3 656731 657029 -217380129 - AluSx SINE Alu -14 298 1 1080 204 33 49 chr3 657029 657085 -217380073 + MER33 DNA MER1_type 269 324 0 1162 275 88 10 chr3 657121 657507 -217379651 - LTR65 LTR ERV1 -29 640 225 180 297 128 34 chr3 657685 657833 -217379325 + L2 LINE L2 2895 3056 -216 231 280 56 19 chr3 657975 658082 -217379076 + L2 LINE L2 3201 3311 -2 688 262 27 22 chr3 659101 659284 -217377874 - MER5A DNA MER1_type -3 186 3 308 237 237 0 chr3 659544 659637 -217377521 - L2 LINE L2 0 3313 3199 819 268 107 53 chr3 659652 660175 -217376983 - MLT1H1 LTR MaLR -2 553 3 702 250 109 0 chr3 660412 660596 -217376562 - MIR SINE MIR -1 261 58 29 70 0 0 chr3 662749 662806 -217374352 + AT_rich Low_complexity Low_complexity 1 57 0 180 152 0 0 chr3 662870 662903 -217374255 + (TAA)n Simple_repeat Simple_repeat 3 35 0 301 289 11 0 chr3 663025 663115 -217374043 - L1MC4 LINE L1 -1339 6703 6613 23 78 0 0 chr3 664341 664392 -217372766 + AT_rich Low_complexity Low_complexity 1 51 0 362 326 23 0 chr3 664521 664650 -217372508 + MER103 DNA DNA 24 155 -11 1988 135 4 0 chr3 665903 666204 -217370954 - AluSx SINE Alu 0 302 1 282 353 83 0 chr3 666272 666405 -217370753 - MER5A DNA MER1_type 0 189 46 352 267 168 31 chr3 666456 666647 -217370511 - L2 LINE L2 -69 3244 3028 401 188 0 10 chr3 666848 666944 -217370214 + (CA)n Simple_repeat Simple_repeat 1 95 0 1615 178 52 0 chr3 666966 667253 -217369905 + AluJb SINE Alu 1 302 -10 946 329 36 17 chr3 667334 667745 -217369413 + L3 LINE CR1 946 1364 -213 404 261 164 48 chr3 668314 668536 -217368622 + MER113 DNA MER1_type? 38 312 -209 2202 117 7 0 chr3 668536 668845 -217368313 + AluSx SINE Alu 1 311 -1 404 261 164 48 chr3 668845 668952 -217368206 + MER113 DNA MER1_type? 312 405 -116 232 353 39 0 chr3 669353 669455 -217367703 - L2 LINE L2 0 3272 3167 876 216 52 28 chr3 669512 669725 -217367433 - MER20 DNA MER1_type 0 219 2 831 186 6 27 chr3 671808 671991 -217365167 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 673524 673590 -217363568 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 674097 674345 -217362813 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 674778 674893 -217362265 - L2 LINE L2 -8 3305 3190 215 305 180 8 chr3 676305 676433 -217360725 + L2 LINE L2 3160 3309 -4 990 196 0 0 chr3 678233 678406 -217358752 - AluJb SINE Alu -5 307 135 243 264 36 82 chr3 679086 679196 -217357962 + MLT1K LTR MaLR 462 566 -22 194 152 0 22 chr3 680391 680437 -217356721 + GA-rich Low_complexity Low_complexity 2 46 0 336 154 0 0 chr3 680551 680603 -217356555 + L2 LINE L2 3261 3312 -1 1794 175 0 3 chr3 681156 681447 -217355711 - AluJb SINE Alu -22 290 1 22 35 0 0 chr3 682976 683005 -217354153 + AT_rich Low_complexity Low_complexity 1 29 0 234 150 0 0 chr3 683041 683081 -217354077 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1563 241 43 108 chr3 683114 683672 -217353486 - MLT1F1 LTR MaLR 0 567 24 805 115 0 0 chr3 683688 683834 -217353324 + AluSg/x SINE Alu 177 322 0 237 180 20 0 chr3 684239 684289 -217352869 - MLT1I LTR MaLR -1 408 358 611 306 97 12 chr3 684342 684590 -217352568 - MLT1I LTR MaLR -140 269 1 2016 186 3 3 chr3 685056 685421 -217351737 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 686465 686487 -217350671 + AT_rich Low_complexity Low_complexity 1 22 0 242 312 37 37 chr3 688630 688739 -217348419 + MIR SINE MIR 59 167 -95 41 98 0 0 chr3 689761 689893 -217347265 + AT_rich Low_complexity Low_complexity 1 132 0 602 177 39 31 chr3 690083 690213 -217346945 + FLAM_C SINE Alu 1 131 -2 255 285 228 13 chr3 690217 690375 -217346783 - MIR SINE MIR -43 219 28 250 285 0 0 chr3 691246 691323 -217345835 + FRAM/FAM SINE Alu 14 81 -94 627 235 37 31 chr3 691348 691510 -217345648 + AluJb SINE Alu 149 311 -1 679 258 0 12 chr3 691747 691910 -217345248 - AluJb SINE Alu -23 289 129 346 314 96 13 chr3 691991 692147 -217345011 + MIR SINE MIR 46 214 -48 4981 94 6 1 chr3 692153 692854 -217344304 + L1PA10 LINE L1 5453 6156 -12 227 129 0 0 chr3 692897 692928 -217344230 + L2 LINE L2 3263 3293 -20 1918 233 93 14 chr3 693031 693516 -217343642 - MLT1E LTR MaLR -4 589 67 201 347 31 10 chr3 693520 693618 -217343540 + L3 LINE CR1 1334 1433 -144 580 292 53 19 chr3 694144 694353 -217342805 + MIR SINE MIR 46 261 -1 566 289 142 0 chr3 695793 695990 -217341168 + MIR SINE MIR 30 254 -8 29 0 0 0 chr3 696150 696179 -217340979 + AT_rich Low_complexity Low_complexity 1 29 0 418 303 82 26 chr3 696729 696924 -217340234 - MIR SINE MIR -2 260 55 254 273 225 23 chr3 697014 697124 -217340034 - MIR SINE MIR -37 171 36 1779 123 40 7 chr3 698156 698466 -217338692 + AluSx SINE Alu 1 319 0 25 0 0 0 chr3 698903 698928 -217338230 + AT_rich Low_complexity Low_complexity 1 25 0 207 204 0 41 chr3 699752 699801 -217337357 + CT-rich Low_complexity Low_complexity 5 51 0 1922 241 76 3 chr3 700119 700695 -217336463 + L1MC4 LINE L1 6459 7076 -966 1755 239 123 3 chr3 700704 701295 -217335863 + L1MC4 LINE L1 7238 7899 -143 233 329 0 47 chr3 702669 702754 -217334404 + L2 LINE L2 3191 3271 -42 283 296 71 10 chr3 702996 703094 -217334064 - L2 LINE L2 0 3313 3210 195 298 48 96 chr3 703456 703523 -217333635 - MIR SINE MIR -27 235 166 5867 103 28 1 chr3 703523 704430 -217332728 + L1PA13 LINE L1 5230 6160 -3 195 298 48 96 chr3 704430 704550 -217332608 - MIR SINE MIR -96 166 57 1919 178 61 16 chr3 704637 705063 -217332095 + MER65A LTR ERV1 1 445 0 195 381 48 24 chr3 705171 705339 -217331819 - MER5A DNA MER1_type -15 174 3 476 366 98 17 chr3 705479 705602 -217331556 - L2 LINE L2 0 3313 3201 261 0 0 0 chr3 705602 705631 -217331527 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 476 366 98 17 chr3 705631 705979 -217331179 - L2 LINE L2 -112 3201 2804 418 328 56 33 chr3 706615 706920 -217330238 + MER68 LTR ERV1 231 542 -20 1371 224 7 0 chr3 707074 707355 -217329803 + Tigger7 DNA MER2_type 1 283 -450 361 324 85 0 chr3 707496 707672 -217329486 - L1ME4a LINE L1 -206 5915 5725 1986 140 4 0 chr3 709762 710040 -217327118 - AluSx SINE Alu -33 279 1 379 270 0 0 chr3 712780 712869 -217324289 + Tigger7 DNA MER2_type 2499 2587 0 219 183 39 19 chr3 712929 713033 -217324125 + (TA)n Simple_repeat Simple_repeat 1 106 0 798 264 111 97 chr3 713055 713747 -217323411 + MER21B LTR ERV1 12 713 -150 2514 211 3 63 chr3 713786 714375 -217322783 - MLT2B3 LTR ERVL 0 554 1 322 247 22 22 chr3 716409 716498 -217320660 + MLT1H LTR MaLR 136 224 -325 233 326 0 0 chr3 716636 716728 -217320430 + MLT1H LTR MaLR 454 545 -4 2122 97 4 0 chr3 716938 717216 -217319942 + AluSg SINE Alu 1 279 -31 267 31 0 0 chr3 717222 717254 -217319904 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr3 717922 717952 -217319206 + AT_rich Low_complexity Low_complexity 1 30 0 674 329 44 17 chr3 718193 718537 -217318621 + L2 LINE L2 2196 2548 -766 721 292 4 30 chr3 718756 718992 -217318166 + MIR SINE MIR 23 252 -10 339 300 44 128 chr3 719424 719509 -217317649 + L2 LINE L2 3020 3111 -161 1508 186 95 23 chr3 719509 719858 -217317300 - MLT1A2 LTR MaLR 0 374 1 339 300 44 128 chr3 719858 720045 -217317113 + L2 LINE L2 3111 3269 -3 366 307 26 9 chr3 720187 720301 -217316857 + MIR3 SINE MIR 87 202 -6 190 294 119 16 chr3 720366 720492 -217316666 + L2 LINE L2 2041 2179 -1135 1081 182 14 5 chr3 720503 720717 -217316441 + MER58A DNA MER1_type 9 224 0 1104 289 43 109 chr3 720717 721930 -217315228 + L2 LINE L2 2176 3311 -2 201 161 18 71 chr3 722380 722436 -217314722 - L2 LINE L2 -755 2559 2507 297 301 130 21 chr3 722992 723231 -217313927 + MLT1J LTR MaLR 228 492 -19 2550 291 95 34 chr3 724680 725218 -217311940 + L2 LINE L2 34 538 -2776 2323 100 3 0 chr3 725218 725528 -217311630 - AluY SINE Alu 0 311 1 2550 291 95 34 chr3 725528 726182 -217310976 + L2 LINE L2 538 1299 -2015 1061 314 133 13 chr3 726238 726988 -217310170 + L2 LINE L2 2486 3313 0 351 335 197 0 chr3 727788 728006 -217309152 - L3 LINE CR1 -1 1576 1316 354 301 44 65 chr3 728155 728540 -217308618 - MLT1J1 LTR MaLR -20 426 50 768 345 75 18 chr3 728672 729072 -217308086 - L3 LINE CR1 -251 1326 904 462 350 53 31 chr3 729529 729849 -217307309 - L1ME LINE L1 -318 5803 5477 248 192 68 27 chr3 729946 730019 -217307139 - L1M3 LINE L1 -729 5442 5367 320 327 79 0 chr3 730135 730236 -217306922 + L2 LINE L2 2432 2540 -774 189 290 11 75 chr3 730246 730339 -217306819 + L2 LINE L2 3173 3259 -54 1595 184 150 36 chr3 730562 730655 -217306503 + MLT1D LTR MaLR 1 82 -423 4011 80 30 2 chr3 730655 731194 -217305964 - MER41A LTR ERV1 0 554 1 1595 184 150 36 chr3 731194 731546 -217305612 + MLT1D LTR MaLR 82 497 -8 227 114 0 0 chr3 731759 731794 -217305364 - MLT2D LTR ERVL 0 515 481 388 104 13 13 chr3 731800 731828 -217305330 + (GA)n Simple_repeat Simple_repeat 1 28 -49 279 0 0 0 chr3 731828 731859 -217305299 + (CA)n Simple_repeat Simple_repeat 2 32 0 388 104 13 13 chr3 731859 731907 -217305251 + (GA)n Simple_repeat Simple_repeat 27 77 0 1521 168 29 59 chr3 731907 732282 -217304876 - MLT2D LTR ERVL -48 366 3 24 32 0 0 chr3 732448 732479 -217304679 + AT_rich Low_complexity Low_complexity 1 31 0 1092 182 47 14 chr3 732622 732980 -217304178 + MER61B LTR ERV1 1 389 -36 22 0 0 0 chr3 733611 733633 -217303525 + AT_rich Low_complexity Low_complexity 1 22 0 217 256 133 44 chr3 733956 734046 -217303112 - MIR3 SINE MIR -108 100 3 23 54 0 0 chr3 734214 734251 -217302907 + AT_rich Low_complexity Low_complexity 1 37 0 612 273 67 29 chr3 735222 735431 -217301727 - MIR SINE MIR -7 255 39 342 331 35 7 chr3 735815 735960 -217301198 + MIR3 SINE MIR 55 203 -5 2145 201 14 14 chr3 735986 736414 -217300744 + MSTA LTR MaLR 1 428 0 750 255 27 0 chr3 736504 736692 -217300466 + MER20 DNA MER1_type 27 219 0 1895 228 82 8 chr3 738187 738688 -217298470 - MLT1F LTR MaLR -2 540 3 617 343 58 29 chr3 738745 739121 -217298037 - L2 LINE L2 -86 3227 2841 329 380 25 13 chr3 741079 741237 -217295921 + L2 LINE L2 2936 3095 -177 290 303 98 16 chr3 741305 741427 -217295731 - MIR SINE MIR -21 241 110 317 167 0 50 chr3 741532 741592 -217295566 - AluJo SINE Alu -6 295 239 894 195 13 0 chr3 741593 741752 -217295406 - AluJo SINE Alu -136 176 16 181 132 19 19 chr3 741802 741855 -217295303 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 190 130 19 37 chr3 741881 741935 -217295223 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 604 251 94 21 chr3 741937 742128 -217295030 - MER63A DNA MER1_type -5 205 1 256 287 35 61 chr3 742182 742297 -217294861 + L2 LINE L2 3161 3272 0 186 171 0 0 chr3 742780 742821 -217294337 + (ATG)n Simple_repeat Simple_repeat 2 42 0 316 264 231 0 chr3 742894 743015 -217294143 + MIR SINE MIR 23 171 -91 679 254 20 5 chr3 743165 743366 -217293792 + MER3 DNA MER1_type 6 209 0 372 306 200 0 chr3 743963 744123 -217293035 - MIR3 SINE MIR -1 207 16 426 267 14 34 chr3 745956 746102 -217291056 - Charlie8 DNA MER1_type -2274 143 1 273 293 113 0 chr3 747757 747863 -217289295 + MIR SINE MIR 143 260 -2 370 357 7 29 chr3 747892 748032 -217289126 + L2 LINE L2 3134 3270 -2 825 200 0 0 chr3 748349 748489 -217288669 - FRAM SINE Alu -19 157 18 1893 209 76 15 chr3 749410 749884 -217287274 + MLT1D LTR MaLR 3 505 0 784 248 70 33 chr3 750066 750308 -217286850 + MIR SINE MIR 2 252 -10 224 233 16 16 chr3 750318 750380 -217286778 - MIR SINE MIR -61 147 93 589 211 0 23 chr3 750869 751002 -217286156 - MER5A DNA MER1_type -59 130 1 1476 176 146 5 chr3 752135 752504 -217284654 - MSTB1 LTR MaLR -4 428 8 685 288 23 0 chr3 752907 753084 -217284074 - MIR SINE MIR -26 236 56 249 348 34 0 chr3 753119 753237 -217283921 + MIR SINE MIR 139 260 -2 371 217 29 0 chr3 754367 754436 -217282722 + MER58 DNA MER1_type 2350 2420 0 929 331 78 18 chr3 754632 754799 -217282359 + L2 LINE L2 2455 2610 -703 1372 210 57 20 chr3 754799 755151 -217282007 + MLT1A1 LTR MaLR 1 365 0 929 331 78 18 chr3 755151 755798 -217281360 + L2 LINE L2 2610 3309 -4 431 318 68 36 chr3 756834 757054 -217280104 - MIR SINE MIR -14 248 22 1805 152 7 0 chr3 757212 757489 -217279669 + AluSx SINE Alu 1 279 -33 336 119 15 30 chr3 757574 757641 -217279517 - Alu SINE Alu 0 301 236 22 0 0 0 chr3 758202 758224 -217278934 + AT_rich Low_complexity Low_complexity 1 22 0 233 355 13 0 chr3 758239 758315 -217278843 + L2 LINE L2 3182 3258 -14 232 289 12 60 chr3 758461 758544 -217278614 + MIR SINE MIR 21 99 -109 968 263 26 4 chr3 758756 758984 -217278174 - MIR SINE MIR -10 252 20 1972 114 14 21 chr3 759190 759480 -217277678 + AluSc SINE Alu 1 288 -21 261 349 0 0 chr3 760198 760281 -217276877 + L2 LINE L2 3190 3272 0 204 327 45 36 chr3 760432 760542 -217276616 + L2 LINE L2 3156 3266 -6 261 261 22 97 chr3 761410 761540 -217275618 + MIR SINE MIR 20 139 -69 193 260 26 65 chr3 761540 761617 -217275541 + MER5A DNA MER1_type 2 75 -114 5842 223 92 16 chr3 761618 763546 -217273612 + L1MDa LINE L1 14 2263 -4277 192 234 16 121 chr3 763726 763850 -217273308 + MIR SINE MIR 141 251 -11 365 261 43 58 chr3 765097 765235 -217271923 + MLT1L LTR MaLR 438 573 -42 1570 149 11 48 chr3 765709 766049 -217271109 + MER61C LTR ERV1 1 428 -6 1159 236 56 25 chr3 766061 766345 -217270813 - MER4D LTR ERV1 -56 847 555 1800 161 0 3 chr3 766420 766706 -217270452 - MER49 LTR ERV1 -638 285 1 240 283 87 0 chr3 767536 767628 -217269530 - MIR SINE MIR -92 170 71 1067 114 12 0 chr3 767772 767938 -217269220 + MER41B LTR ERV1 1 168 -467 2972 131 9 6 chr3 768040 768506 -217268652 + MER41B LTR ERV1 169 635 0 822 147 0 0 chr3 768779 768908 -217268250 + FLAM_C SINE Alu 2 130 -3 230 157 59 0 chr3 769328 769379 -217267779 + L1P LINE L1 577 630 -5516 371 98 0 0 chr3 770485 770536 -217266622 - MADE1 DNA Mariner -29 51 1 338 321 24 97 chr3 771211 771750 -217265408 - L2 LINE L2 -1 3312 2813 189 271 235 0 chr3 772043 772128 -217265030 - MIR3 SINE MIR -4 204 100 282 301 40 45 chr3 772295 772494 -217264664 + L1ME4a LINE L1 5732 5929 -192 293 256 144 38 chr3 772574 772734 -217264424 - MIR SINE MIR -26 236 60 21 57 0 0 chr3 773628 773663 -217263495 + AT_rich Low_complexity Low_complexity 1 35 0 1848 140 11 11 chr3 773826 774111 -217263047 + AluJb SINE Alu 1 285 -27 449 296 31 25 chr3 774126 774285 -217262873 - MIR SINE MIR -55 207 48 283 338 63 24 chr3 774862 775069 -217262089 - MIR SINE MIR -28 234 20 889 211 0 0 chr3 775161 775327 -217261831 - FRAM SINE Alu -18 158 1 600 79 20 10 chr3 775328 775429 -217261729 + (TTC)n Simple_repeat Simple_repeat 1 102 0 750 161 0 60 chr3 775989 776138 -217261020 + FLAM_C SINE Alu 1 140 -3 219 324 95 0 chr3 776276 776350 -217260808 - MIR3 SINE MIR -46 162 82 283 224 35 0 chr3 776435 776493 -217260665 - MER91C DNA MER1_type -17 123 64 287 365 42 18 chr3 777074 777241 -217259917 + MIR SINE MIR 20 190 -72 303 299 64 45 chr3 777285 777360 -217259798 + L2 LINE L2 3106 3178 -94 2344 141 8 0 chr3 777360 777721 -217259437 - THE1B LTR MaLR 0 364 1 303 299 64 45 chr3 777721 777802 -217259356 + L2 LINE L2 3178 3265 -7 261 368 30 30 chr3 778775 778908 -217258250 + MIR3 SINE MIR 6 138 -70 1161 238 18 28 chr3 780223 780509 -217256649 - MLT1C LTR MaLR 0 467 185 1146 202 125 35 chr3 780599 780886 -217256272 - MLT1D-int LTR MaLR -179 1192 880 3386 222 11 50 chr3 780973 781865 -217255293 - MLT1D-int LTR MaLR -488 883 27 1672 163 3 14 chr3 781882 782189 -217254969 + AluJb SINE Alu 3 306 0 1385 233 34 79 chr3 782191 782720 -217254438 - MLT1D LTR MaLR 0 505 1 358 312 85 0 chr3 782725 782866 -217254292 - MIR SINE MIR -2 260 108 1530 158 75 0 chr3 782869 783147 -217254011 - MSTB1 LTR MaLR 0 432 134 331 297 86 38 chr3 783817 784130 -217253028 - L1ME4a LINE L1 -68 6053 5726 423 274 0 0 chr3 784447 784549 -217252609 - MIR SINE MIR 0 262 161 2121 195 158 27 chr3 784549 785243 -217251915 - LTR48 LTR ERV1 0 729 1 290 270 11 11 chr3 785243 785332 -217251826 - MIR SINE MIR -98 164 76 824 216 125 4 chr3 785474 785706 -217251452 + MIR SINE MIR 2 261 -1 459 256 56 0 chr3 786396 786556 -217250602 + (TATATG)n Simple_repeat Simple_repeat 4 172 0 21 36 0 0 chr3 787699 787727 -217249431 + AT_rich Low_complexity Low_complexity 1 28 0 235 256 68 105 chr3 787914 788047 -217249111 - MIR SINE MIR -32 230 103 437 197 205 0 chr3 788131 788248 -217248910 - MIR SINE MIR -73 189 49 576 140 0 56 chr3 788329 788436 -217248722 - Tigger7 DNA MER2_type 0 2487 2387 * 2766 175 58 0 chr3 788425 788911 -217248247 - Tigger7 DNA MER2_type -1973 514 1 34 84 0 0 chr3 789825 789908 -217247250 + AT_rich Low_complexity Low_complexity 1 83 0 24 0 0 0 chr3 790128 790152 -217247006 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr3 790902 790948 -217246210 + AT_rich Low_complexity Low_complexity 1 46 0 4523 72 7 0 chr3 791185 791771 -217245387 - LTR10C LTR ERV1 -1 590 1 2479 56 3 0 chr3 791799 792102 -217245056 + AluY SINE Alu 1 304 -7 428 222 30 30 chr3 792529 792664 -217244494 - MER69 DNA AcHobo -12 2514 2380 821 136 116 61 chr3 792876 793074 -217244084 + L1MA6 LINE L1 5821 6029 -271 230 421 86 17 chr3 793094 793327 -217243831 + L2 LINE L2 3009 3257 -15 761 284 102 0 chr3 793330 793566 -217243592 - MIR SINE MIR 0 262 3 2566 108 3 18 chr3 794293 794674 -217242484 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr3 797650 797678 -217239480 + AT_rich Low_complexity Low_complexity 1 28 0 333 174 0 0 chr3 798723 798792 -217238366 + (CA)n Simple_repeat Simple_repeat 1 69 0 375 307 12 18 chr3 798828 798991 -217238167 + (CA)n Simple_repeat Simple_repeat 1 162 0 293 294 5 53 chr3 799040 799250 -217237908 + (CA)n Simple_repeat Simple_repeat 1 199 0 359 171 14 0 chr3 800119 800189 -217236969 + MER116 DNA Mariner 1 71 -9 321 47 0 0 chr3 800677 800720 -217236438 + (TC)n Simple_repeat Simple_repeat 2 44 0 1712 215 66 17 chr3 800723 801193 -217235965 + MLT1D LTR MaLR 5 497 -8 192 276 92 72 chr3 801316 801468 -217235690 + MIR SINE MIR 31 185 -77 356 238 85 43 chr3 801594 801629 -217235529 - MER34B LTR ERV1 0 565 533 1387 222 73 9 chr3 801629 801972 -217235186 + MLT1A1 LTR MaLR 1 365 0 356 238 85 43 chr3 801972 802100 -217235058 - MER34B LTR ERV1 -32 533 395 1355 173 9 0 chr3 802115 802340 -217234818 + AluJo SINE Alu 84 310 -2 658 243 17 65 chr3 802345 802699 -217234459 - MER34B LTR ERV1 -184 381 4 273 228 63 47 chr3 803051 803178 -217233980 + L1MCa LINE L1 140 268 -6296 1034 296 25 46 chr3 803178 803359 -217233799 + L1MCa LINE L1 141 324 -5721 2130 52 0 0 chr3 803359 803628 -217233530 - AluY SINE Alu -6 305 37 1034 296 25 46 chr3 803628 803885 -217233273 + L1MCa LINE L1 324 570 -5475 312 146 0 0 chr3 804070 804118 -217233040 + Alu SINE Alu 235 282 -20 1860 206 47 67 chr3 804118 804652 -217232506 + LTR9 LTR ERV1 1 523 -89 915 93 0 0 chr3 804682 804800 -217232358 - AluSg1 SINE Alu -191 118 1 307 240 58 19 chr3 804800 804904 -217232254 + LTR19C LTR ERV1 672 779 0 198 91 0 0 chr3 804909 804942 -217232216 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1526 214 128 49 chr3 804942 805599 -217231559 + L1MCa LINE L1 619 1338 -4966 1969 144 0 10 chr3 805599 805734 -217231424 + AluSx SINE Alu 1 136 -176 2095 119 20 3 chr3 805734 806029 -217231129 + AluSx SINE Alu 1 300 -12 1969 144 0 10 chr3 806029 806184 -217230974 + AluSx SINE Alu 136 288 -24 1526 214 128 49 chr3 806184 806310 -217230848 + L1MCa LINE L1 1338 1453 -4851 276 100 0 0 chr3 807623 807663 -217229495 + (CA)n Simple_repeat Simple_repeat 2 41 0 1597 154 130 17 chr3 807818 808163 -217228995 - MLT1B LTR MaLR -2 388 5 1170 121 156 0 chr3 808646 808845 -217228313 + MER30 DNA MER1_type 1 230 0 1526 211 0 4 chr3 808909 809188 -217227970 + AluJb SINE Alu 6 283 -29 355 354 9 0 chr3 809214 809327 -217227831 + MIR SINE MIR 33 146 -116 517 205 192 26 chr3 809356 809507 -217227651 - MER5A DNA MER1_type -5 184 9 232 237 66 26 chr3 809511 809587 -217227571 + MIR SINE MIR 168 246 -16 311 285 74 104 chr3 810078 810404 -217226754 + L2 LINE L2 2996 3311 -2 186 189 0 0 chr3 810404 810441 -217226717 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 985 204 88 4 chr3 812533 812783 -217224375 + ORSL DNA AcHobo 2 272 -3 357 213 43 156 chr3 813163 813304 -217223854 + L2 LINE L2 3188 3312 -1 417 218 0 0 chr3 913633 913720 -217123438 - MER54B LTR ERVL -6 787 701 745 221 47 9 chr3 913729 914159 -217122999 + L1MCa LINE L1 2004 2486 -4259 373 189 0 0 chr3 914156 914230 -217122928 + L1MD3 LINE L1 7732 7805 -190 * 2724 246 22 22 chr3 914230 914792 -217122366 + L1MB7 LINE L1 4566 5127 -1057 5612 30 26 0 chr3 914792 915470 -217121688 + L1PA5 LINE L1 5457 6152 -2 2724 246 22 22 chr3 915470 916513 -217120645 + L1MB7 LINE L1 5127 6168 -16 6455 68 9 0 chr3 916527 917681 -217119477 - L1PA8 LINE L1 -2 6170 5083 190 272 130 53 chr3 918090 918259 -217118899 - L2 LINE L2 -2 3311 3130 462 248 94 0 chr3 918577 918694 -217118464 - FLAM_C SINE Alu -15 128 1 1378 164 0 33 chr3 918697 919001 -217118157 - L1 LINE L1 -1536 4610 4317 2452 215 77 10 chr3 919007 919629 -217117529 - L1MDa LINE L1 -5846 694 31 439 329 74 25 chr3 919717 919960 -217117198 + MIR SINE MIR 8 262 0 571 257 14 35 chr3 920030 920174 -217116984 + MIR3 SINE MIR 16 156 -52 1808 184 0 48 chr3 920684 921060 -217116098 - MLT1B LTR MaLR 0 390 33 278 65 0 22 chr3 921060 921106 -217116052 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1939 99 3 46 chr3 921118 921400 -217115758 - AluSc SINE Alu -39 270 1 2191 254 35 5 chr3 921902 922480 -217114678 + L2 LINE L2 1927 2521 -793 2268 220 64 8 chr3 922497 923238 -217113920 - L1ME1 LINE L1 -6 6160 5350 362 58 96 0 chr3 923238 923342 -217113816 + (TA)n Simple_repeat Simple_repeat 2 115 0 22558 150 12 13 chr3 923342 925806 -217111352 - L1PA10 LINE L1 -10 6473 4010 462 18 0 0 chr3 925806 925861 -217111297 + (TG)n Simple_repeat Simple_repeat 2 56 0 22558 150 12 13 chr3 925861 928267 -217108891 - L1PA10 LINE L1 -2473 4010 1610 841 30 0 0 chr3 928267 928368 -217108790 - L1PA4 LINE L1 -8 6147 6047 22558 150 12 13 chr3 928368 928668 -217108490 - L1PA10 LINE L1 -4873 1610 1311 203 0 37 0 chr3 928682 928709 -217108449 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 37441 82 5 2 chr3 928756 934881 -217102277 - L1PA5 LINE L1 0 6154 11 2324 183 15 28 chr3 934939 935477 -217101681 - L1PA10 LINE L1 -4734 1141 717 2709 190 6 2 chr3 935477 935983 -217101175 - L1PA10 LINE L1 -5367 508 1 642 154 83 6 chr3 935997 936153 -217101005 - L1M4 LINE L1 -799 5347 5180 1551 257 89 67 chr3 936163 936929 -217100229 + L2 LINE L2 2513 3313 0 2388 155 32 0 chr3 937586 938024 -217099134 - Tigger1 DNA MER2_type -1 2417 1966 7514 31 0 0 chr3 938026 939395 -217097763 - L1PA4 LINE L1 0 6155 4789 11492 196 35 9 chr3 939396 941716 -217095442 - L1M1 LINE L1 -4888 2677 298 625 261 61 6 chr3 941825 942005 -217095153 - L1M1 LINE L1 -7215 350 161 * 15789 133 7 8 chr3 941998 942902 -217094256 + L1P LINE L1 2296 3200 -2946 1526 97 9 44 chr3 942902 943129 -217094029 + AluY SINE Alu 84 302 -9 15789 133 7 8 chr3 943129 944961 -217092197 + L1P LINE L1 3200 5027 -1119 1699 132 3 0 chr3 944971 945258 -217091900 - L1P LINE L1 -990 5156 4869 * 5871 132 1 5 chr3 945256 946227 -217090931 - L1P LINE L1 -1620 4526 3560 10575 219 28 35 chr3 946228 951175 -217085983 - L1PA15-16 LINE L1 -2157 4692 8 459 163 0 0 chr3 951175 951255 -217085903 - Tigger1 DNA MER2_type -443 1975 1896 259 203 0 31 chr3 951257 951321 -217085837 + (TATG)n Simple_repeat Simple_repeat 2 63 0 11050 150 35 5 chr3 951330 953182 -217083976 - Tigger1 DNA MER2_type -511 1907 2 194 340 128 0 chr3 953391 953485 -217083673 + L2 LINE L2 3158 3263 -9 538 354 14 7 chr3 953610 953754 -217083404 + MER91A DNA MER1_type 51 195 -1 205 260 123 68 chr3 954266 954412 -217082746 + MER5A DNA MER1_type 35 188 -1 180 0 0 0 chr3 954930 954950 -217082208 + (TG)n Simple_repeat Simple_repeat 2 21 0 281 229 84 0 chr3 955290 955373 -217081785 + MIR SINE MIR 64 153 -109 21 57 0 0 chr3 955462 955497 -217081661 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr3 955567 955599 -217081559 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 955632 955662 -217081496 + AT_rich Low_complexity Low_complexity 1 30 0 3736 195 36 13 chr3 955756 956609 -217080549 + L1MA4A LINE L1 1768 2640 -4209 2430 167 31 22 chr3 956612 957062 -217080096 + LTR22A LTR ERVK 5 458 0 6109 118 22 14 chr3 957064 957641 -217079517 + HERVK22 LTR ERVK 3 591 -6246 2706 26 0 0 chr3 957641 957948 -217079210 + AluYb8 SINE Alu 1 307 -11 6109 118 22 14 chr3 957948 958296 -217078862 + HERVK22 LTR ERVK 591 935 -5902 10475 122 4 1 chr3 958296 959792 -217077366 + HERVK22 LTR ERVK 2144 3644 -3193 12083 136 1 5 chr3 959798 961761 -217075397 + HERVK22 LTR ERVK 3188 6836 -1 2433 171 13 19 chr3 961762 962223 -217074935 + LTR22A LTR ERVK 1 458 0 7154 225 53 10 chr3 962223 966125 -217071033 + L1MA4A LINE L1 2635 6749 -256 * 7631 84 2 2 chr3 966121 967183 -217069975 + L1P LINE L1 1871 2932 -3214 1029 47 0 0 chr3 967171 967299 -217069859 - L1P LINE L1 -3101 3045 2918 * 370 138 51 0 chr3 967317 967393 -217069765 + L1MA4A LINE L1 6739 6822 -180 5172 168 10 29 chr3 967427 968821 -217068337 - L1P LINE L1 -4610 1536 8 27674 76 5 2 chr3 968876 973413 -217063745 + L1PA6 LINE L1 1608 6153 -1 186 133 0 0 chr3 973418 973448 -217063710 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 208 139 0 0 chr3 973468 973504 -217063654 + (A)n Simple_repeat Simple_repeat 1 36 0 378 356 67 0 chr3 973507 973687 -217063471 - MIR SINE MIR -2 260 69 212 286 189 51 chr3 974172 974347 -217062811 - L3 LINE CR1 -27 1550 1352 261 73 0 0 chr3 974646 974687 -217062471 - L1PA6 LINE L1 0 6154 6114 487 257 68 14 chr3 974691 974839 -217062319 - MIR3 SINE MIR -38 170 15 2043 181 42 44 chr3 975089 975517 -217061641 - MSTB LTR MaLR 0 415 1 2074 127 0 0 chr3 975599 975914 -217061244 - AluSx SINE Alu 0 315 1 2074 123 7 3 chr3 975921 976214 -217060944 - AluSc SINE Alu -13 296 3 227 281 206 7 chr3 977374 977520 -217059638 - MIR SINE MIR 0 262 88 22 0 0 0 chr3 977520 977542 -217059616 + AT_rich Low_complexity Low_complexity 1 22 0 441 327 42 0 chr3 977582 977747 -217059411 - MIR SINE MIR -71 191 20 344 259 88 57 chr3 978000 978160 -217058998 - L1ME3 LINE L1 -311 5855 5691 376 272 127 13 chr3 978219 978377 -217058781 + L2 LINE L2 3138 3313 0 515 318 24 16 chr3 978524 978776 -217058382 - L1ME3 LINE L1 -1301 4845 4592 24 32 0 0 chr3 979365 979396 -217057762 + AT_rich Low_complexity Low_complexity 1 31 0 20272 114 12 2 chr3 979605 981931 -217055227 + L1M3f LINE L1 1103 3878 -2450 336 64 0 0 chr3 981931 981978 -217055180 + (CAA)n Simple_repeat Simple_repeat 2 48 0 20272 114 12 2 chr3 981978 982765 -217054393 + L1M3f LINE L1 3878 4656 -1672 6689 73 7 2 chr3 982765 984376 -217052782 + L1PA7 LINE L1 4538 6151 -3 622 237 50 32 chr3 984612 984831 -217052327 + L1MC4 LINE L1 7807 8029 -13 302 186 34 0 chr3 984848 984907 -217052251 + AluJ/FLAM SINE Alu 25 85 -217 584 196 108 6 chr3 984926 985092 -217052066 + L1MC2 LINE L1 5961 6148 -226 1531 184 27 0 chr3 985092 985375 -217051783 - AluSx SINE Alu 0 304 15 1890 152 36 30 chr3 985533 985863 -217051295 - THE1B LTR MaLR -32 332 1 535 380 10 0 chr3 985908 986221 -217050937 + L1MC4a LINE L1 5513 5828 -1980 17228 170 32 15 chr3 986230 988977 -217048181 + L1M1 LINE L1 37 2974 -4591 2173 128 0 0 chr3 988977 989275 -217047883 + AluSg SINE Alu 2 299 -11 17228 170 32 15 chr3 989275 989744 -217047414 + L1M1 LINE L1 2974 3433 -4132 452 171 0 0 chr3 989749 989825 -217047333 - L1P LINE L1 -2546 3600 3525 259 290 63 50 chr3 991093 991213 -217045945 - MIR3 SINE MIR -9 199 78 184 295 21 32 chr3 991562 991657 -217045501 - L3b LINE CR1 -222 1361 1268 1131 158 34 49 chr3 991787 992053 -217045105 - L1MA1 LINE L1 -4 6298 6037 444 364 12 0 chr3 992829 992991 -217044167 - MIR3 SINE MIR 0 208 45 2486 196 50 0 chr3 993004 993701 -217043457 + L1PB2 LINE L1 551 1284 -4920 3038 175 40 3 chr3 993711 994318 -217042840 + L1PB2 LINE L1 1419 2047 -4157 1354 146 0 14 chr3 994320 994532 -217042626 - AluSq SINE Alu -16 297 89 12509 191 29 14 chr3 994537 996210 -217040948 + L1PB2 LINE L1 2096 3742 -2466 2028 164 86 5 chr3 996210 996606 -217040552 + MSTA LTR MaLR 1 428 0 12509 191 29 14 chr3 996606 998976 -217038182 + L1PB2 LINE L1 3742 6201 -7 21 36 0 0 chr3 998976 999004 -217038154 + AT_rich Low_complexity Low_complexity 1 28 0 2103 167 18 5 chr3 999014 999591 -217037567 + L1MA8 LINE L1 4981 5566 -725 2271 151 36 23 chr3 999594 1000032 -217037126 + MLT2A1 LTR ERVL 1 444 0 42177 91 5 6 chr3 1000032 1005689 -217031469 + HERVL-A1-A1 LTR ERVL 1 5654 0 2335 84 16 0 chr3 1005689 1005997 -217031161 + MLT2A1 LTR ERVL 1 313 -131 304 193 50 25 chr3 1005997 1006158 -217031000 + (TATAA)n Simple_repeat Simple_repeat 4 168 0 287 71 0 24 chr3 1006163 1006205 -217030953 + MLT2A1 LTR ERVL 411 451 -2 3476 159 53 9 chr3 1006205 1006898 -217030260 + L1MA8 LINE L1 5564 6287 -4 34 65 0 0 chr3 1007221 1007283 -217029875 + AT_rich Low_complexity Low_complexity 1 62 0 363 192 93 41 chr3 1007391 1007563 -217029595 - Charlie7 DNA MER1_type -28 2584 2404 2242 133 58 24 chr3 1007694 1008108 -217029050 + MSTA LTR MaLR 1 428 0 245 259 21 98 chr3 1008161 1008304 -217028854 - Charlie7 DNA MER1_type -2018 594 463 22 56 0 0 chr3 1008342 1008378 -217028780 + AT_rich Low_complexity Low_complexity 1 36 0 1292 294 48 53 chr3 1008533 1009614 -217027544 - L1ME3A LINE L1 -8 6162 5088 22690 188 14 28 chr3 1009633 1016249 -217020909 + L1PA10 LINE L1 10 6557 0 440 35 0 0 chr3 1017449 1017506 -217019652 + L1PA6 LINE L1 6093 6149 -5 229 291 8 30 chr3 1017517 1017651 -217019507 - L1ME3A LINE L1 -1053 5093 4963 511 178 51 0 chr3 1017680 1017798 -217019360 - L1MA8 LINE L1 -4 6287 6164 934 270 42 46 chr3 1017921 1018447 -217018711 - L1ME3A LINE L1 -1300 4846 4323 4312 243 74 16 chr3 1018451 1019114 -217018044 + L1ME3A LINE L1 2783 3406 -2740 2301 54 7 0 chr3 1019114 1019442 -217017716 + AluY SINE Alu 3 332 0 4312 243 74 16 chr3 1019442 1020277 -217016881 + L1ME3A LINE L1 3406 4369 -1777 21 82 0 0 chr3 1020484 1020533 -217016625 + AT_rich Low_complexity Low_complexity 1 49 0 1610 176 18 106 chr3 1020588 1021088 -217016070 + L1ME3A LINE L1 4369 4824 -1322 254 295 80 27 chr3 1021706 1021818 -217015340 - L2 LINE L2 -5 3267 3150 1462 206 49 25 chr3 1021953 1022361 -217014797 + L1ME3A LINE L1 4816 5233 -913 1335 266 85 33 chr3 1022356 1022991 -217014167 + HAL1 LINE L1 1840 2507 0 * 22 88 0 0 chr3 1023909 1023966 -217013192 + AT_rich Low_complexity Low_complexity 1 57 0 13495 220 38 19 chr3 1024001 1028152 -217009006 - L1MA5 LINE L1 -25 7337 3269 922 145 0 0 chr3 1028152 1028304 -217008854 - L1PA14 LINE L1 -1 6160 6009 13495 220 38 19 chr3 1028304 1029215 -217007943 - L1MA5 LINE L1 -4093 3269 2137 2027 155 0 0 chr3 1029215 1029506 -217007652 - AluSx SINE Alu -19 293 3 13495 220 38 19 chr3 1029506 1029905 -217007253 - L1MA5 LINE L1 -5225 2137 1747 230 218 36 0 chr3 1030216 1030271 -217006887 + L1M2 LINE L1 5499 5555 -742 * 783 257 87 10 chr3 1030241 1030550 -217006608 + L1ME3A LINE L1 5523 5855 -315 1661 52 0 0 chr3 1030705 1030915 -217006243 + L1PA3 LINE L1 5946 6155 0 439 289 15 22 chr3 1031337 1031472 -217005686 - MIR3 SINE MIR -33 175 42 3533 207 31 10 chr3 1032406 1033055 -217004103 - L1MA7 LINE L1 -10 6293 5558 2007 214 99 72 chr3 1033055 1033859 -217003299 + LTR1B LTR ERV1 1 826 0 3533 207 31 10 chr3 1033859 1034106 -217003052 - L1MA7 LINE L1 -745 5558 5318 441 282 24 32 chr3 1034106 1034230 -217002928 + L2 LINE L2 3146 3268 -4 263 420 13 21 chr3 1034398 1034634 -217002524 + L2 LINE L2 2825 3058 -214 301 319 80 11 chr3 1035041 1035229 -217001929 - L2 LINE L2 -873 2441 2241 751 224 29 24 chr3 1035597 1035767 -217001391 - FRAM SINE Alu -12 164 1 4201 125 0 2 chr3 1036312 1036952 -217000206 + L1MA3 LINE L1 5314 5952 -353 * 22742 172 26 61 chr3 1036930 1037852 -216999306 + L1PA10 LINE L1 1 954 -5214 4015 152 18 73 chr3 1037852 1038683 -216998475 + LTR1 LTR ERV1 1 785 0 22742 172 26 61 chr3 1038683 1038972 -216998186 + L1PA10 LINE L1 954 1252 -4916 206 0 69 0 chr3 1038972 1039001 -216998157 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22742 172 26 61 chr3 1039001 1044190 -216992968 + L1PA10 LINE L1 1252 6165 -3 2039 96 88 6 chr3 1044196 1044539 -216992619 + L1MA3 LINE L1 5935 6305 0 2047 113 10 3 chr3 1044541 1044832 -216992326 + AluSq SINE Alu 1 293 -20 230 198 0 86 chr3 1046554 1046635 -216990523 - L1MB1 LINE L1 -1 6188 6115 532 177 31 0 chr3 1046638 1046734 -216990424 - FLAM_A SINE Alu -41 101 3 25626 63 21 1 chr3 1047460 1053470 -216983688 + L1PA5 LINE L1 3 6143 -11 21 0 0 0 chr3 1053708 1053729 -216983429 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 1053758 1053781 -216983377 + AT_rich Low_complexity Low_complexity 1 23 0 577 146 0 176 chr3 1053810 1053975 -216983183 - AluJb SINE Alu -92 220 85 408 279 149 13 chr3 1054164 1054318 -216982840 + MIR SINE MIR 46 220 -42 25 0 0 0 chr3 1054328 1054353 -216982805 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr3 1055194 1055221 -216981937 + (A)n Simple_repeat Simple_repeat 1 27 0 2047 173 69 6 chr3 1055223 1055661 -216981497 - MER31A LTR ERV1 -12 531 3 236 100 25 0 chr3 1055860 1055900 -216981258 + (CA)n Simple_repeat Simple_repeat 2 42 0 224 231 31 0 chr3 1056156 1056221 -216980937 + (TTG)n Simple_repeat Simple_repeat 2 68 0 32 43 0 0 chr3 1056288 1056334 -216980824 + AT_rich Low_complexity Low_complexity 1 46 0 2283 101 6 20 chr3 1056402 1056748 -216980410 - L1PA13 LINE L1 -1 6162 5822 241 339 106 22 chr3 1057440 1057620 -216979538 - MIR SINE MIR -4 258 64 1523 195 41 21 chr3 1058630 1058678 -216978480 - MSTB2 LTR MaLR -112 345 299 2916 137 5 2 chr3 1058678 1059125 -216978033 - MER83 LTR ERV1 0 448 1 1523 195 41 21 chr3 1059125 1059414 -216977744 - MSTB2 LTR MaLR -158 299 1 246 95 0 0 chr3 1059995 1060037 -216977121 + (A)n Simple_repeat Simple_repeat 1 42 0 1052 323 89 19 chr3 1060111 1060582 -216976576 - L3 LINE CR1 -23 1554 1051 410 303 103 44 chr3 1060912 1061318 -216975840 + L2 LINE L2 2219 2648 -666 1820 161 16 3 chr3 1061366 1061671 -216975487 + MER1B DNA MER1_type 31 339 0 423 330 124 57 chr3 1061709 1062145 -216975013 + L2 LINE L2 2808 3272 0 360 236 73 16 chr3 1063557 1063680 -216973478 - MIR SINE MIR -28 234 105 291 54 0 0 chr3 1063912 1063949 -216973209 + (TC)n Simple_repeat Simple_repeat 1 37 0 237 132 0 0 chr3 1063948 1063986 -216973172 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 1710 192 13 16 chr3 1064321 1064634 -216972524 + AluJo SINE Alu 1 312 0 1599 203 0 13 chr3 1064640 1064950 -216972208 + AluJb SINE Alu 3 308 -4 1632 209 6 16 chr3 1065339 1065654 -216971504 + AluJo SINE Alu 1 312 0 1684 197 0 13 chr3 1065658 1065968 -216971190 + AluJb SINE Alu 3 308 -4 8288 195 43 46 chr3 1066246 1066614 -216970544 - L1MB1 LINE L1 -1 6167 5799 1400 203 30 36 chr3 1066614 1066915 -216970243 - AluJo SINE Alu -3 299 1 8288 195 43 46 chr3 1066915 1068786 -216968372 - L1MB1 LINE L1 -369 5799 3929 1761 188 3 0 chr3 1068786 1069078 -216968080 - AluJb SINE Alu -13 299 7 8288 195 43 46 chr3 1069078 1070182 -216966976 - L1MB1 LINE L1 -2239 3929 2823 1123 222 45 70 chr3 1070244 1070612 -216966546 - L1MA9 LINE L1 -40 6272 5917 1697 171 29 6 chr3 1070612 1070927 -216966231 - L1PA15 LINE L1 -13 7590 7269 1123 222 45 70 chr3 1070927 1071026 -216966132 - L1MA9 LINE L1 -395 5917 5817 419 218 0 10 chr3 1071016 1071117 -216966041 - L1P LINE L1 -1981 4165 4066 * 10061 205 18 6 chr3 1071125 1074089 -216963069 - L1PA15 LINE L1 -347 7256 4253 2104 42 0 4 chr3 1074089 1074350 -216962808 - L1PA3 LINE L1 -1 6154 5895 364 339 32 22 chr3 1074854 1075167 -216961991 - L1PA15 LINE L1 -7259 322 7 528 196 20 34 chr3 1075175 1075323 -216961835 - L1MA9 LINE L1 -367 5945 5800 17786 133 24 38 chr3 1075335 1078796 -216958362 + L1P3 LINE L1 5 3450 -3011 6643 26 1 1 chr3 1078796 1079570 -216957588 + L1PA3 LINE L1 5373 6152 -3 17786 133 24 38 chr3 1079570 1080271 -216956887 + L1P3 LINE L1 3450 4159 -2302 2606 66 2 4 chr3 1080273 1080771 -216956387 - LTR7 LTR ERV1 -2 448 2 26253 54 1 2 chr3 1080772 1084237 -216952921 - HERVH LTR ERV1 0 7713 4252 13931 106 7 16 chr3 1084235 1086843 -216950315 - HERVH LTR ERV1 -1857 5234 1796 * 11732 36 3 1 chr3 1086847 1089044 -216948114 - L1PA3 LINE L1 -1 6154 3953 7247 47 23 0 chr3 1089044 1090026 -216947132 + L1PA3 LINE L1 2919 3923 -2223 4590 227 17 17 chr3 1090023 1090995 -216946163 - L1PA13 LINE L1 -3317 3480 2510 * 1203 46 0 0 chr3 1090995 1091147 -216946011 + L1PA4 LINE L1 6001 6152 -3 4590 227 17 17 chr3 1091147 1091669 -216945489 - L1PA13 LINE L1 -4287 2510 1972 1932 89 119 0 chr3 1091669 1091938 -216945220 - AluY SINE Alu 0 301 1 4590 227 17 17 chr3 1091938 1092380 -216944778 - L1PA13 LINE L1 -4825 1972 1532 909 124 103 0 chr3 1092922 1093067 -216944091 - THE1B LTR MaLR -204 160 1 836 121 0 48 chr3 1093954 1094145 -216943013 - L1PBa LINE L1 -3839 3023 2840 * 1015 131 16 0 chr3 1094143 1094326 -216942832 - L1MA6 LINE L1 -38 6262 6077 10071 25 7 0 chr3 1094389 1096346 -216940812 - L1PA5 LINE L1 -3 6151 4179 2747 238 33 23 chr3 1096346 1097196 -216939962 - L1 LINE L1 -896 5250 4410 1992 153 140 11 chr3 1097196 1097575 -216939583 - MSTA LTR MaLR 0 428 1 8608 168 10 31 chr3 1097577 1099187 -216937971 - MSTA-int LTR MaLR -2 1578 3 1650 164 144 31 chr3 1099191 1099574 -216937584 - MSTA LTR MaLR 0 428 3 2747 238 33 23 chr3 1099574 1099597 -216937561 - L1 LINE L1 -1738 4408 4360 793 270 18 32 chr3 1099619 1099960 -216937198 - L1MA9 LINE L1 -201 6111 5776 770 180 5 57 chr3 1100073 1100284 -216936874 + L1MA4A LINE L1 5848 6047 -256 * 24018 83 4 1 chr3 1100280 1104556 -216932602 + L1PA6 LINE L1 1871 6154 0 2932 48 19 3 chr3 1104562 1104938 -216932220 + L1PA6 LINE L1 5770 6151 -3 1193 136 14 0 chr3 1105001 1105221 -216931937 + L1MA6 LINE L1 6077 6299 -1 182 275 0 0 chr3 1105300 1105340 -216931818 - MIR SINE MIR -64 198 159 643 269 90 12 chr3 1105416 1105672 -216931486 - L2 LINE L2 -39 3274 2999 439 326 74 107 chr3 1105677 1106042 -216931116 - L2 LINE L2 -2 3270 2918 22 0 0 0 chr3 1106342 1106364 -216930794 + AT_rich Low_complexity Low_complexity 1 22 0 188 319 21 0 chr3 1106722 1106769 -216930389 - MIR SINE MIR -68 140 93 328 287 0 23 chr3 1106780 1106867 -216930291 - L2 LINE L2 0 3313 3229 * 537 320 90 21 chr3 1106856 1107190 -216929968 - L2 LINE L2 -1729 1585 1229 328 279 103 22 chr3 1107452 1107588 -216929570 + MIR SINE MIR 3 149 -113 7157 45 7 6 chr3 1107621 1109291 -216927867 - L1PA4 LINE L1 -1 6154 4458 539 222 9 0 chr3 1109322 1109430 -216927728 - MER81 DNA DNA -5 109 1 349 203 212 25 chr3 1109950 1110068 -216927090 + L1ME4a LINE L1 5968 6107 -14 445 276 178 6 chr3 1110189 1110352 -216926806 + MIR SINE MIR 8 198 -64 1708 196 0 20 chr3 1110353 1110654 -216926504 + AluJb SINE Alu 1 295 -17 250 271 146 10 chr3 1110677 1110773 -216926385 + MIR SINE MIR 45 153 -55 414 271 113 26 chr3 1110790 1110941 -216926217 + MIR3 SINE MIR 34 197 -11 204 324 0 14 chr3 1111275 1111346 -216925812 + MIR3 SINE MIR 115 184 -24 183 365 149 0 chr3 1111824 1111931 -216925227 + MIR SINE MIR 20 142 -66 4180 202 27 3 chr3 1112178 1113081 -216924077 - L1P LINE L1 -5206 940 17 23 33 0 0 chr3 1113607 1113637 -216923521 + AT_rich Low_complexity Low_complexity 1 30 0 611 223 19 38 chr3 1114955 1115166 -216921992 + L1MA9 LINE L1 6068 6274 -38 2306 107 3 0 chr3 1115195 1115495 -216921663 + AluSp SINE Alu 3 303 -10 3083 47 0 0 chr3 1115689 1116071 -216921087 - L1PA4 LINE L1 -3 6152 5771 2208 46 3 0 chr3 1116071 1116354 -216920804 + L1P2 LINE L1 5439 5722 -433 7263 165 34 45 chr3 1118954 1119159 -216917999 - L1M2 LINE L1 -743 5403 5197 1967 144 3 0 chr3 1119159 1119444 -216917714 - AluSx SINE Alu -26 286 1 7263 165 34 45 chr3 1119444 1120506 -216916652 - L1M2 LINE L1 -949 5197 4222 2346 95 0 0 chr3 1120506 1120810 -216916348 + AluY SINE Alu 1 304 -7 7263 165 34 45 chr3 1120810 1121327 -216915831 - L1M2 LINE L1 -1924 4222 3701 3473 46 14 0 chr3 1121434 1121872 -216915286 + L1PA3 LINE L1 5711 6154 -1 284 82 20 0 chr3 1121872 1121921 -216915237 + L1MA1 LINE L1 6250 6299 -3 884 186 0 0 chr3 1121939 1122106 -216915052 + L1PA16 LINE L1 5812 5978 -188 338 75 0 19 chr3 1122116 1122169 -216914989 - MLT2A2 LTR ERVL 0 453 402 231 195 26 13 chr3 1122180 1122257 -216914901 + (TA)n Simple_repeat Simple_repeat 1 78 0 327 270 11 11 chr3 1122260 1122349 -216914809 + L1MC4 LINE L1 6614 6702 -1340 1204 163 31 16 chr3 1122350 1122608 -216914550 - MLT2A1 LTR ERVL -182 262 1 2189 107 28 0 chr3 1122608 1122962 -216914196 - HERVL-A1-A1 LTR ERVL 0 5654 5291 * 35681 91 15 9 chr3 1122961 1128035 -216909123 - HERVL-A1-A1 LTR ERVL -550 5104 1 2570 113 57 7 chr3 1128035 1128080 -216909078 - MLT2A1 LTR ERVL 0 444 403 396 0 0 0 chr3 1128080 1128124 -216909034 + (CA)n Simple_repeat Simple_repeat 2 45 0 2570 113 57 7 chr3 1128124 1128501 -216908657 - MLT2A1 LTR ERVL -41 403 1 719 221 6 6 chr3 1128508 1128666 -216908492 + L1PA16 LINE L1 5993 6150 -16 1440 274 61 27 chr3 1128681 1129691 -216907467 - L1M1 LINE L1 -3909 3656 2660 3450 217 44 13 chr3 1129840 1131175 -216905983 - L1M2 LINE L1 -682 5630 4244 264 398 53 9 chr3 1131293 1131519 -216905639 + L1M2 LINE L1 976 1211 -6355 266 367 8 8 chr3 1131723 1131851 -216905307 + L1PA13 LINE L1 1441 1568 -5271 322 378 41 78 chr3 1132273 1132567 -216904591 + L1M2 LINE L1 1564 1846 -5720 249 284 91 0 chr3 1132570 1132658 -216904500 + L1PA13 LINE L1 1472 1567 -5282 * 3796 238 36 56 chr3 1132652 1133793 -216903365 + L1PA13 LINE L1 1346 2549 -4300 684 200 9 0 chr3 1133793 1133908 -216903250 + FLAM_C SINE Alu 1 116 -17 3796 238 36 56 chr3 1133908 1134410 -216902748 + L1PA13 LINE L1 2549 3059 -3790 6692 243 73 16 chr3 1134431 1136164 -216900994 + L1 LINE L1 3284 5197 -1652 2013 136 60 26 chr3 1136164 1136516 -216900642 + THE1B LTR MaLR 1 364 0 6692 243 73 16 chr3 1136516 1137204 -216899954 + L1 LINE L1 5197 5844 -1005 2037 191 20 4 chr3 1137313 1137763 -216899395 + L1M2 LINE L1 2073 2529 -5036 1834 46 8 0 chr3 1137760 1137999 -216899159 - L1P1 LINE L1 -2461 3685 3445 * 12630 51 6 1 chr3 1137997 1140001 -216897157 + L1P1 LINE L1 3660 5672 -483 2653 212 17 11 chr3 1140101 1140813 -216896345 - L1 LINE L1 -2522 3806 3091 13044 32 0 15 chr3 1140813 1143193 -216893965 - L1PA3 LINE L1 0 6155 3798 5124 52 1 0 chr3 1143193 1143889 -216893269 + L1PA3 LINE L1 3104 3800 -2346 2480 182 24 42 chr3 1143886 1144507 -216892651 - L1 LINE L1 -3227 3101 2492 * 965 147 86 6 chr3 1144508 1144671 -216892487 - AluSp SINE Alu 0 313 138 3784 228 36 28 chr3 1144672 1146113 -216891045 - L1 LINE L1 -3819 2509 1054 808 213 0 37 chr3 1146113 1146277 -216890881 + FRAM SINE Alu 1 150 -26 408 111 0 49 chr3 1146286 1146367 -216890791 - L1 LINE L1 -4276 1052 976 501 280 0 8 chr3 1146368 1146500 -216890658 - L1 LINE L1 -5020 308 178 1692 203 41 19 chr3 1146746 1147269 -216889889 + L1M2c LINE L1 1457 1985 -4734 754 177 23 57 chr3 1349215 1349390 -216687768 + L1MC2 LINE L1 6171 6339 -5 182 219 0 0 chr3 1349769 1349801 -216687357 + MIR SINE MIR 159 190 -72 331 324 19 9 chr3 1351225 1351330 -216685828 - MIR3 SINE MIR -14 194 89 536 297 60 6 chr3 1354446 1354628 -216682530 + MIR SINE MIR 22 213 -49 508 209 0 0 chr3 1355018 1355131 -216682027 - L1MA4A LINE L1 0 6279 6044 * 2132 141 34 44 chr3 1355121 1355532 -216681626 - L1MA4A LINE L1 -182 6121 5715 282 282 19 19 chr3 1356778 1356881 -216680277 - MIR SINE MIR -70 138 36 306 230 135 48 chr3 1357326 1357452 -216679706 - MER117 DNA MER1_type -60 137 1 321 260 114 16 chr3 1358912 1359035 -216678123 + MIR SINE MIR 15 149 -113 510 250 147 6 chr3 1359403 1359559 -216677599 + MER5A DNA MER1_type 9 186 -3 314 317 169 6 chr3 1360981 1361164 -216675994 + MIR SINE MIR 1 213 -49 4127 185 127 155 chr3 1361253 1362219 -216674939 + L1MC4 LINE L1 6340 7332 -710 1348 159 4 17 chr3 1362219 1362458 -216674700 + AluSq SINE Alu 1 236 -77 4127 185 127 155 chr3 1362458 1362891 -216674267 + L1MC4 LINE L1 7332 7926 -116 279 0 0 0 chr3 1362891 1362922 -216674236 + (TG)n Simple_repeat Simple_repeat 2 32 0 4127 185 127 155 chr3 1362922 1363036 -216674122 + L1MC4 LINE L1 7926 8042 0 510 307 42 16 chr3 1363298 1363487 -216673671 - MIR SINE MIR -22 240 47 298 308 183 23 chr3 1364997 1365260 -216671898 + L2 LINE L2 2661 2965 -349 240 304 14 0 chr3 1365416 1365485 -216671673 + L2 LINE L2 3195 3264 -8 1708 171 10 3 chr3 1366570 1366868 -216670290 + AluJo SINE Alu 1 300 -12 384 273 132 57 chr3 1366981 1367208 -216669950 - L1ME LINE L1 -331 5790 5547 524 251 134 67 chr3 1368090 1368313 -216668845 + MIR SINE MIR 24 261 -1 517 269 60 7 chr3 1368715 1368864 -216668294 + MIR3 SINE MIR 37 193 -15 342 184 87 0 chr3 1369248 1369351 -216667807 - L1ME4a LINE L1 -2 6119 6008 820 335 67 23 chr3 1369487 1369962 -216667196 - L1ME4a LINE L1 -307 5814 5319 487 262 48 12 chr3 1370529 1370700 -216666458 + MIR SINE MIR 10 184 -69 263 247 56 34 chr3 1370759 1370848 -216666310 + L2 LINE L2 3153 3243 -29 423 288 42 8 chr3 1371374 1371492 -216665666 - MIR SINE MIR -40 222 101 898 289 100 22 chr3 1373433 1373842 -216663316 + MLT1K LTR MaLR 144 584 -4 2043 106 3 13 chr3 1374736 1375038 -216662120 + AluSx SINE Alu 1 299 -13 1707 142 184 6 chr3 1375604 1375963 -216661195 + MSTA LTR MaLR 4 426 -2 1814 143 10 22 chr3 1376031 1376367 -216660791 - AluSx SINE Alu 0 332 1 537 252 41 0 chr3 1376671 1376818 -216660340 - MER103 DNA DNA -12 154 2 1946 141 0 20 chr3 1377099 1377426 -216659732 - AluSx SINE Alu 0 312 1 337 305 108 89 chr3 1378645 1378914 -216658244 + L2 LINE L2 2914 3187 -85 233 304 180 12 chr3 1379680 1379818 -216657340 - MIR SINE MIR -44 164 7 3565 199 36 26 chr3 1379819 1380750 -216656408 - L1ME1 LINE L1 -32 6134 5196 716 186 127 56 chr3 1380900 1381239 -216655919 + L1MC5 LINE L1 7565 7927 -34 223 309 0 37 chr3 1382103 1382184 -216654974 - MIR SINE MIR -100 108 31 491 329 7 0 chr3 1383335 1383472 -216653686 + MIR3 SINE MIR 30 167 -41 303 215 114 25 chr3 1385073 1385152 -216652006 - MIR3 SINE MIR -9 199 114 285 216 135 0 chr3 1385430 1385504 -216651654 + L1MC5 LINE L1 7808 7891 -70 2238 203 67 54 chr3 1385994 1386550 -216650608 + MLT1F1 LTR MaLR 1 563 -4 1809 190 103 38 chr3 1386559 1387033 -216650125 + MLT1D LTR MaLR 1 505 0 2015 146 33 9 chr3 1387296 1387625 -216649533 + MER1B DNA MER1_type 1 337 0 277 263 140 9 chr3 1388581 1388695 -216648463 - MIR3 SINE MIR -43 165 37 2225 110 0 0 chr3 1388990 1389300 -216647858 + AluSg SINE Alu 1 310 0 1862 123 6 43 chr3 1391171 1391495 -216645663 - AluSx SINE Alu 0 312 1 23 0 0 0 chr3 1391495 1391518 -216645640 + AT_rich Low_complexity Low_complexity 1 23 0 701 117 0 0 chr3 1391542 1391645 -216645513 - AluSg/x SINE Alu -2 310 208 751 237 72 10 chr3 1391729 1391923 -216645235 + MER3 DNA MER1_type 3 208 -1 378 327 31 25 chr3 1393088 1393247 -216643911 + MIR3 SINE MIR 36 195 -13 343 250 92 58 chr3 1393631 1393751 -216643407 + MIR SINE MIR 25 148 -114 1977 106 10 51 chr3 1393998 1394309 -216642849 - AluSx SINE Alu -14 298 1 22 0 0 0 chr3 1394319 1394341 -216642817 + AT_rich Low_complexity Low_complexity 1 22 0 366 302 82 80 chr3 1394344 1394908 -216642250 + L2 LINE L2 2702 3272 0 300 230 40 14 chr3 1396399 1396473 -216640685 - MER117 DNA MER1_type -78 119 44 392 241 66 99 chr3 1396800 1396918 -216640240 - MIR SINE MIR -6 256 147 1836 147 3 3 chr3 1396918 1397204 -216639954 - AluJb SINE Alu -23 289 4 392 241 66 99 chr3 1397204 1397297 -216639861 - MIR SINE MIR -115 147 52 630 262 126 19 chr3 1398676 1398890 -216638268 - MIR SINE MIR -12 250 14 441 39 0 0 chr3 1398983 1399035 -216638123 + MADE1 DNA Mariner 2 53 -27 413 57 0 0 chr3 1399206 1399259 -216637899 - MADE1 DNA Mariner -27 53 1 2032 99 31 7 chr3 1402699 1402991 -216634167 + AluSg SINE Alu 1 299 -11 570 279 132 6 chr3 1404621 1404905 -216632253 + L1MC4a LINE L1 5561 5805 -316 185 319 0 0 chr3 1406003 1406072 -216631086 + L2 LINE L2 3195 3263 -9 256 284 68 0 chr3 1407732 1407806 -216629352 + L2 LINE L2 3008 3086 -186 358 219 289 0 chr3 1409295 1409409 -216627749 + MIR SINE MIR 8 154 -108 187 209 0 0 chr3 1409570 1409613 -216627545 - L2 LINE L2 -1 3312 3270 2005 115 34 0 chr3 1409874 1410170 -216626988 + AluSx SINE Alu 6 311 -1 234 162 0 0 chr3 1410841 1410878 -216626280 + MIR SINE MIR 113 149 -59 289 247 39 13 chr3 1410969 1411046 -216626112 - MIR SINE MIR -28 234 156 * 741 288 14 9 chr3 1411044 1411259 -216625899 + MIR SINE MIR 5 220 -42 1205 168 72 50 chr3 1411262 1411524 -216625634 + AluJo SINE Alu 7 274 -38 262 271 0 0 chr3 1411548 1411607 -216625551 + MIR SINE MIR 204 262 0 918 155 94 75 chr3 1411637 1411850 -216625308 + MER20 DNA MER1_type 1 217 -2 207 0 0 0 chr3 1413981 1414004 -216623154 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 705 118 0 0 chr3 1414020 1414130 -216623028 + (TCCA)n Simple_repeat Simple_repeat 1 110 0 513 331 118 10 chr3 1414377 1414691 -216622467 + L2 LINE L2 2966 3313 0 4086 84 20 32 chr3 1415700 1416297 -216620861 - L1PA10 LINE L1 -3 6165 5576 357 339 0 0 chr3 1416310 1416419 -216620739 + MIR SINE MIR 7 115 -147 588 224 109 21 chr3 1416561 1416753 -216620405 + MIR SINE MIR 1 209 -53 252 186 0 34 chr3 1416839 1416898 -216620260 + FLAM_A SINE Alu 75 131 -2 2342 132 71 0 chr3 1417543 1417936 -216619222 + L1PA16 LINE L1 5741 6161 -5 519 217 32 106 chr3 1417936 1418057 -216619101 + L1ME2 LINE L1 5964 6066 -98 1804 194 77 58 chr3 1418057 1418553 -216618605 + MLT1D LTR MaLR 1 505 0 519 217 32 106 chr3 1418553 1418637 -216618521 + L1ME2 LINE L1 6066 6155 -9 229 277 11 96 chr3 1418857 1418951 -216618207 - MIR3 SINE MIR -41 167 79 403 163 12 12 chr3 1419494 1419574 -216617584 - MIR3 SINE MIR -47 161 82 471 298 7 28 chr3 1420208 1420349 -216616809 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 1421296 1421516 -216615642 - MIR SINE MIR -17 245 8 427 326 7 28 chr3 1421899 1422040 -216615118 + MIR3 SINE MIR 10 147 -61 2671 83 0 0 chr3 1422393 1422744 -216614414 + L1PA14 LINE L1 5811 6161 0 815 129 0 0 chr3 1423540 1423664 -216613494 + FLAM_C SINE Alu 11 134 -9 189 0 0 0 chr3 1423878 1423899 -216613259 + (A)n Simple_repeat Simple_repeat 1 21 0 240 289 72 40 chr3 1425108 1425260 -216611898 + MIR SINE MIR 72 228 -34 531 282 62 66 chr3 1425948 1426253 -216610905 + L2 LINE L2 2950 3253 -19 608 233 0 0 chr3 1426271 1426387 -216610771 + FLAM_A SINE Alu 1 116 -17 23 0 0 0 chr3 1426909 1426932 -216610226 + AT_rich Low_complexity Low_complexity 1 23 0 189 107 0 0 chr3 1428314 1428342 -216608816 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 412 195 114 57 chr3 1430837 1430960 -216606198 + MIR3 SINE MIR 10 139 -69 371 313 9 0 chr3 1431691 1431806 -216605352 + MIR SINE MIR 55 170 -92 203 304 11 76 chr3 1432253 1432345 -216604813 - MIR SINE MIR -19 243 158 216 267 78 43 chr3 1432353 1432469 -216604689 - L2 LINE L2 -3 3269 3150 184 222 44 0 chr3 1432867 1432912 -216604246 - L2 LINE L2 -667 2647 2601 259 341 12 0 chr3 1432959 1433044 -216604114 + MIR SINE MIR 8 93 -169 396 316 100 40 chr3 1433101 1433500 -216603658 - L2 LINE L2 -785 2529 2107 858 165 15 17 chr3 1433859 1434208 -216602950 + GA-rich Low_complexity Low_complexity 1 348 0 818 250 18 14 chr3 1434411 1434631 -216602527 - MER58A DNA MER1_type -3 221 1 2029 91 0 4 chr3 1434939 1435254 -216601904 + AluSx SINE Alu 7 320 0 185 105 0 53 chr3 1435878 1435916 -216601242 + (GGAAA)n Simple_repeat Simple_repeat 5 40 0 369 43 0 0 chr3 1436017 1436064 -216601094 + MADE1 DNA Mariner 34 80 0 31 0 0 0 chr3 1436278 1436309 -216600849 + AT_rich Low_complexity Low_complexity 1 31 0 764 174 0 0 chr3 1436312 1436433 -216600725 + FLAM_A SINE Alu 2 122 -11 408 247 33 60 chr3 1436745 1436895 -216600263 - MIR SINE MIR -89 173 28 1112 269 128 39 chr3 1438884 1439410 -216597748 + MLT1H1 LTR MaLR 1 548 -5 185 294 39 0 chr3 1439463 1439514 -216597644 + MIR SINE MIR 77 129 -133 473 178 0 0 chr3 1439533 1439606 -216597552 + MER2 DNA MER2_type 273 345 0 455 253 58 93 chr3 1440765 1440842 -216596316 - L1ME3 LINE L1 0 6162 6084 2074 132 21 6 chr3 1440842 1441175 -216595983 - L1PA13 LINE L1 0 6163 5826 455 253 58 93 chr3 1441175 1441322 -216595836 - L1ME3 LINE L1 -78 6084 5946 537 323 12 6 chr3 1442572 1442739 -216594419 + MER91A DNA MER1_type 2 169 -27 328 85 0 0 chr3 1442813 1442860 -216594298 + L1MB7 LINE L1 6130 6176 -8 311 259 0 0 chr3 1443407 1443465 -216593693 - L2 LINE L2 0 3272 3215 384 293 173 42 chr3 1443945 1444136 -216593022 - MIR SINE MIR -3 259 44 193 211 193 0 chr3 1444376 1444433 -216592725 - L2 LINE L2 -1 3271 3204 186 227 0 91 chr3 1444604 1444670 -216592488 + L2 LINE L2 2997 3056 -216 374 298 38 15 chr3 1445348 1445479 -216591679 + MIR SINE MIR 117 250 -12 436 241 20 79 chr3 1446589 1446792 -216590366 + L1MC5 LINE L1 7737 7927 -34 441 0 0 0 chr3 1448649 1448698 -216588460 + (CA)n Simple_repeat Simple_repeat 2 50 0 186 43 0 0 chr3 1448771 1448794 -216588364 + (CA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr3 1448829 1448853 -216588305 + (T)n Simple_repeat Simple_repeat 1 24 0 619 242 124 0 chr3 1449732 1449885 -216587273 - MIR SINE MIR -25 237 66 2150 76 0 10 chr3 1450330 1450619 -216586539 + L1MA1 LINE L1 6016 6301 -1 236 350 12 0 chr3 1450676 1450756 -216586402 + MIR SINE MIR 69 149 -113 289 235 41 20 chr3 1450840 1450938 -216586220 + L1ME3 LINE L1 5556 5655 -466 364 300 111 37 chr3 1451000 1451190 -216585968 + L1ME3 LINE L1 5796 5999 -122 1814 132 28 28 chr3 1451194 1451483 -216585675 + AluJo SINE Alu 1 289 -23 26 0 0 0 chr3 1451550 1451576 -216585582 + AT_rich Low_complexity Low_complexity 1 26 0 2123 126 7 0 chr3 1452740 1453033 -216584125 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr3 1453085 1453120 -216584038 + AT_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr3 1455578 1455629 -216581529 + AT_rich Low_complexity Low_complexity 1 51 0 273 366 12 30 chr3 1455760 1455894 -216581264 + MIR3 SINE MIR 23 155 -53 2202 120 3 0 chr3 1455894 1456203 -216580955 - AluSx SINE Alu -2 310 1 273 366 12 30 chr3 1456203 1456232 -216580926 + MIR3 SINE MIR 155 183 -25 249 89 44 0 chr3 1457859 1457904 -216579254 - LTR66 LTR ERVL -170 440 394 258 56 0 0 chr3 1457926 1457962 -216579196 + (TA)n Simple_repeat Simple_repeat 2 37 0 303 272 132 0 chr3 1458842 1458956 -216578202 + L2 LINE L2 3144 3272 0 550 202 11 0 chr3 1458992 1459094 -216578064 + L1ME3 LINE L1 5998 6107 -55 260 283 22 43 chr3 1460438 1460530 -216576628 + MIR SINE MIR 40 129 -79 28 0 0 0 chr3 1463027 1463055 -216574103 + AT_rich Low_complexity Low_complexity 1 28 0 2333 94 0 0 chr3 1463213 1463499 -216573659 - AluSx SINE Alu -26 286 1 553 274 70 46 chr3 1463853 1464094 -216573064 + MIR SINE MIR 6 252 -10 207 0 0 0 chr3 1467881 1467904 -216569254 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2305 111 3 0 chr3 1468651 1468957 -216568201 - AluSx SINE Alu -5 307 1 240 35 0 0 chr3 1469200 1469229 -216567929 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 321 219 73 57 chr3 1469969 1470092 -216567066 + L1ME4a LINE L1 5986 6110 -11 315 203 106 57 chr3 1471559 1471682 -216565476 - MER113 DNA MER1_type? -175 346 218 197 290 17 137 chr3 1471710 1472010 -216565148 + L2 LINE L2 2963 3226 -46 260 294 0 0 chr3 1472120 1472188 -216564970 - MIR SINE MIR 0 262 195 1571 246 86 21 chr3 1472189 1472626 -216564532 + MLT1G1 LTR MaLR 13 436 -106 692 201 71 33 chr3 1472700 1472884 -216564274 - MIR SINE MIR -59 203 13 243 223 134 45 chr3 1473006 1473118 -216564040 - MER113 DNA MER1_type? -182 339 218 2056 211 2 29 chr3 1474209 1474654 -216562504 + L1MD3 LINE L1 7554 7986 -9 1372 162 81 56 chr3 1475319 1475460 -216561698 - L1PA16 LINE L1 0 6166 6030 2422 77 3 0 chr3 1475460 1475757 -216561401 - AluSp SINE Alu -15 298 1 1372 162 81 56 chr3 1475757 1475899 -216561259 - L1PA16 LINE L1 -136 6030 5876 345 198 146 0 chr3 1476578 1476674 -216560484 + MER103 DNA DNA 6 115 -51 196 347 0 32 chr3 1476755 1476850 -216560308 + MIR3 SINE MIR 10 101 -107 508 260 68 40 chr3 1477318 1477495 -216559663 + MIR3 SINE MIR 14 195 -13 21 57 0 0 chr3 1478003 1478038 -216559120 + AT_rich Low_complexity Low_complexity 1 35 0 215 327 114 27 chr3 1478066 1478286 -216558872 - MIR SINE MIR -4 258 20 282 275 99 0 chr3 1478518 1478609 -216558549 - MIR SINE MIR -21 241 142 2375 132 31 14 chr3 1478820 1479177 -216557981 + THE1B LTR MaLR 2 364 0 215 291 104 97 chr3 1479456 1479590 -216557568 - L2 LINE L2 0 3272 3138 257 258 0 15 chr3 1479596 1479662 -216557496 - MIR SINE MIR -8 254 190 1924 152 0 26 chr3 1480519 1480821 -216556337 - AluSx SINE Alu -18 294 1 736 243 77 0 chr3 1481231 1481400 -216555758 + MER58A DNA MER1_type 27 208 -16 242 262 16 0 chr3 1481640 1481701 -216555457 + HsTC2 DNA Tc2 13 74 -1824 2265 132 0 0 chr3 1482138 1482442 -216554716 + AluSx SINE Alu 1 304 -8 342 0 0 0 chr3 1482536 1482574 -216554584 + (CA)n Simple_repeat Simple_repeat 2 39 0 303 250 214 31 chr3 1482897 1483093 -216554065 + L1ME3 LINE L1 5010 5241 -905 527 277 98 94 chr3 1483144 1483280 -216553878 + L1ME3 LINE L1 5317 5451 -719 2437 179 37 16 chr3 1483280 1483789 -216553369 + L1MB8 LINE L1 5658 6177 -1 527 277 98 94 chr3 1483789 1484503 -216552655 + L1ME3 LINE L1 5451 6170 0 442 269 31 8 chr3 1484567 1484697 -216552461 + L1MC4a LINE L1 5396 5528 -2280 393 275 123 34 chr3 1484780 1485016 -216552142 + L1MC4a LINE L1 5779 6035 -1773 1823 173 49 0 chr3 1485088 1485418 -216551740 + MER7A DNA MER2_type 3 346 0 266 206 32 58 chr3 1485444 1485599 -216551559 + (TATAA)n Simple_repeat Simple_repeat 4 154 0 2236 101 3 13 chr3 1486753 1487051 -216550107 - AluSp SINE Alu -18 295 1 495 331 18 0 chr3 1487384 1487553 -216549605 + MIR SINE MIR 89 260 -2 210 323 21 0 chr3 1487561 1487657 -216549501 - MIR SINE MIR -65 197 100 1653 147 45 18 chr3 1487727 1488013 -216549145 - AluJo SINE Alu -11 301 8 1399 234 113 63 chr3 1488917 1489604 -216547554 - L1ME3 LINE L1 0 6162 5275 2093 134 7 0 chr3 1489604 1489895 -216547263 - AluSx SINE Alu -19 293 1 1399 234 113 63 chr3 1489895 1490246 -216546912 - L1ME3 LINE L1 -887 5275 4943 1259 169 49 4 chr3 1490282 1490507 -216546651 - MER46A DNA MER2_type 0 236 2 504 325 35 4 chr3 1490579 1490810 -216546348 + L1MC4a LINE L1 5683 5920 -1888 634 164 102 8 chr3 1491707 1491835 -216545323 + FLAM_C SINE Alu 2 141 -2 205 159 91 0 chr3 1492058 1492102 -216545056 + MIR SINE MIR 104 151 -111 660 297 14 5 chr3 1492361 1492573 -216544585 + MIR SINE MIR 8 221 -41 501 248 55 3 chr3 1492613 1492807 -216544351 - MER58 DNA MER1_type -2 2418 1 397 283 29 35 chr3 1493715 1493888 -216543270 + MIR SINE MIR 79 250 -12 234 259 71 0 chr3 1493977 1494062 -216543096 + MIR SINE MIR 103 193 -69 229 309 37 0 chr3 1495336 1495417 -216541741 - MIR SINE MIR -176 86 3 719 215 0 0 chr3 1496861 1496982 -216540176 - FLAM_A SINE Alu -12 121 1 468 259 105 49 chr3 1497404 1497843 -216539315 + MLT1H1 LTR MaLR 48 542 -13 306 0 0 0 chr3 1498231 1498265 -216538893 + (CA)n Simple_repeat Simple_repeat 2 35 0 237 33 0 0 chr3 1498267 1498297 -216538861 + (TC)n Simple_repeat Simple_repeat 1 30 0 2724 179 24 12 chr3 1500145 1500647 -216536511 + MLT2B2 LTR ERVL 1 508 -7 195 330 174 0 chr3 1501307 1501416 -216535742 + L2 LINE L2 3184 3311 -2 180 125 0 0 chr3 1501570 1501602 -216535556 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 466 274 42 42 chr3 1502001 1502308 -216534850 + L2 LINE L2 1534 1840 -1474 836 278 107 41 chr3 1502311 1502703 -216534455 + L2 LINE L2 2895 3312 -1 1687 197 0 16 chr3 1503521 1503830 -216533328 - AluJo SINE Alu -8 304 1 237 191 59 29 chr3 1503911 1503979 -216533179 + MIR SINE MIR 80 149 -113 256 263 0 85 chr3 1504398 1504516 -216532642 + L1MC5 LINE L1 7806 7913 -48 412 264 175 41 chr3 1505730 1505976 -216531182 + L2 LINE L2 3033 3311 -2 2319 76 0 14 chr3 1506008 1506321 -216530837 + AluY SINE Alu 1 311 0 354 273 124 36 chr3 1506866 1507060 -216530098 + Tigger8 DNA MER2_type 57 267 -399 433 278 124 27 chr3 1507467 1507766 -216529392 + L1ME LINE L1 5372 5699 -471 30 0 0 0 chr3 1508120 1508150 -216529008 + AT_rich Low_complexity Low_complexity 1 30 0 608 253 104 0 chr3 1508367 1508549 -216528609 + L1MC4 LINE L1 6519 6719 -1323 327 300 92 0 chr3 1508560 1508680 -216528478 - MIR SINE MIR -96 166 36 1013 198 23 14 chr3 1509326 1509543 -216527615 + MER20 DNA MER1_type 1 219 0 296 259 69 17 chr3 1510638 1510754 -216526404 + MIR SINE MIR 91 212 -50 1797 108 116 0 chr3 1511346 1511604 -216525554 + AluSg SINE Alu 1 288 -22 222 274 0 0 chr3 1512809 1512860 -216524298 - MIR SINE MIR -17 245 195 1559 248 86 21 chr3 1512861 1513298 -216523860 + MLT1G1 LTR MaLR 13 436 -106 650 186 68 37 chr3 1513372 1513533 -216523625 - MIR SINE MIR -59 203 38 554 225 23 0 chr3 1513660 1513833 -216523325 + GA-rich Low_complexity Low_complexity 4 180 0 351 0 0 0 chr3 1515569 1515608 -216521550 + (TA)n Simple_repeat Simple_repeat 2 40 0 2243 110 7 7 chr3 1515629 1515939 -216521219 - AluSx SINE Alu 0 312 3 930 198 35 30 chr3 1515939 1516136 -216521022 - MER20 DNA MER1_type -18 201 4 215 206 16 48 chr3 1516358 1516421 -216520737 - MER5B DNA MER1_type -2 176 116 3851 151 23 33 chr3 1516474 1517205 -216519953 + LTR8A LTR ERV1 1 724 -3 301 307 0 0 chr3 1517242 1517330 -216519828 - MER5A DNA MER1_type -101 88 1 447 146 361 8 chr3 1517357 1517487 -216519671 - MER5A DNA MER1_type 0 189 14 2817 100 41 30 chr3 1517813 1518273 -216518885 + MER4C LTR ERV1 1 465 0 1123 230 125 71 chr3 1518925 1519409 -216517749 - L1MC4 LINE L1 -2 8040 7513 1737 122 68 32 chr3 1519409 1519688 -216517470 + AluSg SINE Alu 1 289 -21 1123 230 125 71 chr3 1519688 1519825 -216517333 - L1MC4 LINE L1 -529 7513 7385 2665 127 39 18 chr3 1520506 1520948 -216516210 + L1PA16 LINE L1 5335 5785 -381 2170 105 0 3 chr3 1520948 1521242 -216515916 + AluSc SINE Alu 17 309 0 1037 96 32 26 chr3 1521275 1521431 -216515727 + L1PA16 LINE L1 6010 6166 0 4302 185 42 34 chr3 1521649 1522109 -216515049 - L1MB7 LINE L1 -16 6168 5713 1634 179 7 30 chr3 1522109 1522405 -216514753 - AluJb SINE Alu -7 305 17 4302 185 42 34 chr3 1522405 1523143 -216514015 - L1MB7 LINE L1 -471 5713 4959 1923 125 68 0 chr3 1523143 1523422 -216513736 - AluJb SINE Alu -14 298 1 4302 185 42 34 chr3 1523422 1523558 -216513600 - L1MB7 LINE L1 -1225 4959 4825 267 93 0 0 chr3 1524131 1524174 -216512984 + (CA)n Simple_repeat Simple_repeat 2 44 0 589 281 50 43 chr3 1524490 1524793 -216512365 + L1ME1 LINE L1 5809 6113 -53 811 294 37 25 chr3 1525051 1525374 -216511784 - MER102b DNA MER1_type -6 335 9 294 326 7 15 chr3 1525396 1525531 -216511627 + MIR SINE MIR 56 189 -73 215 301 137 0 chr3 1525657 1525730 -216511428 + L3 LINE CR1 1026 1108 -469 321 120 67 53 chr3 1525886 1525961 -216511197 + MER103 DNA DNA 15 90 -76 1972 147 0 7 chr3 1526029 1526321 -216510837 - AluJb SINE Alu -22 290 1 534 306 17 69 chr3 1527348 1527636 -216509522 + Charlie8 DNA MER1_type 1 273 -2144 209 264 92 0 chr3 1528804 1528891 -216508267 + L2 LINE L2 1854 1948 -1366 974 252 58 13 chr3 1529109 1529434 -216507724 + MSTA LTR MaLR 1 428 0 374 280 99 33 chr3 1529450 1529632 -216507526 - MIR SINE MIR -66 196 3 680 249 103 80 chr3 1529688 1530119 -216507039 + MLT1J LTR MaLR 1 441 -70 764 278 48 44 chr3 1530119 1530389 -216506769 - LTR16A1 LTR ERVL 0 457 187 511 284 116 71 chr3 1531581 1532045 -216505113 + MLT1K LTR MaLR 5 489 -99 5934 73 11 14 chr3 1533050 1533844 -216503314 + L1PA14 LINE L1 5369 6160 -1 566 181 124 0 chr3 1533864 1534055 -216503103 + FLAM_A SINE Alu 1 204 0 945 292 41 62 chr3 1534175 1534641 -216502517 - L2 LINE L2 -2 3311 2856 244 262 16 0 chr3 1534710 1534771 -216502387 - MER5B DNA MER1_type -66 112 51 230 257 18 62 chr3 1534910 1535023 -216502135 - L2 LINE L2 -608 2706 2599 355 259 18 36 chr3 1535052 1535164 -216501994 - MER5A DNA MER1_type -63 126 17 584 238 130 11 chr3 1535180 1535365 -216501793 - MER112 DNA MER1_type 0 260 54 675 175 9 0 chr3 1535407 1535521 -216501637 - FLAM_A SINE Alu -18 115 1 962 303 98 18 chr3 1535587 1536138 -216501020 - L2 LINE L2 -718 2596 2002 2203 114 10 0 chr3 1536993 1537292 -216499866 + AluSx SINE Alu 1 302 -10 308 209 15 0 chr3 1537305 1537372 -216499786 + MER5A DNA MER1_type 26 93 -96 252 308 158 0 chr3 1537467 1537600 -216499558 - MER5B DNA MER1_type -24 154 1 711 163 163 0 chr3 1538084 1538225 -216498933 + L1PA16 LINE L1 5876 6039 -127 2207 92 14 0 chr3 1538226 1538509 -216498649 + AluSx SINE Alu 1 287 -25 1896 82 58 0 chr3 1538808 1539051 -216498107 + AluSp SINE Alu 1 257 -56 219 125 0 0 chr3 1539053 1539093 -216498065 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2347 69 0 16 chr3 1539310 1539613 -216497545 + AluY SINE Alu 1 298 -13 334 261 98 83 chr3 1539644 1539908 -216497250 + L1ME LINE L1 5559 5680 -441 2077 103 0 15 chr3 1539912 1540184 -216496974 + AluSq SINE Alu 1 268 -45 1731 158 14 11 chr3 1540455 1540740 -216496418 + AluJb SINE Alu 13 298 -14 2257 105 7 3 chr3 1541719 1542025 -216495133 + AluSc SINE Alu 1 307 -2 693 270 60 36 chr3 1542265 1542598 -216494560 + MER102b DNA MER1_type 1 341 0 422 360 23 6 chr3 1542821 1542993 -216494165 + MER20B DNA MER1_type 55 229 -554 699 186 8 8 chr3 1543004 1543128 -216494030 + AluJb SINE Alu 137 260 -52 453 294 5 33 chr3 1543130 1543314 -216493844 + MER20B DNA MER1_type 232 410 -373 4348 127 78 45 chr3 1543320 1544068 -216493090 - Ricksha DNA DNA -7 3239 2457 2048 113 3 7 chr3 1544068 1544393 -216492765 + AluSx SINE Alu 1 324 0 4348 127 78 45 chr3 1544393 1544505 -216492653 - Ricksha DNA DNA -789 2457 2350 544 187 19 0 chr3 1544532 1544639 -216492519 - Ricksha DNA DNA -1927 119 11 720 237 179 24 chr3 1544646 1544975 -216492183 + MER20B DNA MER1_type 398 777 -6 701 304 77 23 chr3 1545336 1545727 -216491431 - L2 LINE L2 0 3313 2902 290 0 75 0 chr3 1545727 1545767 -216491391 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 229 331 0 32 chr3 1546158 1546282 -216490876 - L2 LINE L2 -15 3257 3138 203 288 38 0 chr3 1546463 1546543 -216490615 - MIR SINE MIR -114 148 66 808 298 25 0 chr3 1546588 1546830 -216490328 - MIR SINE MIR -2 260 13 1318 144 9 5 chr3 1547463 1547678 -216489480 - AluSg/x SINE Alu -2 310 95 2085 130 0 7 chr3 1547834 1548127 -216489031 + AluSx SINE Alu 1 291 -21 860 248 148 18 chr3 1548252 1548643 -216488515 + Charlie7 DNA MER1_type 275 716 -1896 225 0 0 0 chr3 1548745 1548770 -216488388 + (CA)n Simple_repeat Simple_repeat 2 26 0 954 131 15 0 chr3 1548794 1548931 -216488227 - FAM SINE Alu -15 170 32 2556 60 0 3 chr3 1549098 1549400 -216487758 + AluY SINE Alu 1 301 -10 2414 89 0 3 chr3 1550261 1550563 -216486595 - AluSx SINE Alu -6 306 6 264 243 126 9 chr3 1552007 1552118 -216485040 + L2 LINE L2 3188 3311 -2 2068 89 33 0 chr3 1552242 1552537 -216484621 + AluSc SINE Alu 1 304 0 2448 82 0 3 chr3 1552542 1552845 -216484313 + AluSc SINE Alu 1 302 -7 409 328 95 25 chr3 1552845 1553400 -216483758 - L2 LINE L2 -25 3288 2695 2433 126 67 12 chr3 1553417 1553823 -216483335 + MSTA LTR MaLR 1 428 0 296 248 33 74 chr3 1553835 1553964 -216483194 - L2 LINE L2 -904 2410 2287 180 0 0 0 chr3 1554254 1554274 -216482884 + (A)n Simple_repeat Simple_repeat 1 20 0 412 309 129 36 chr3 1554433 1554821 -216482337 + HAL1 LINE L1 239 662 -1845 359 280 40 30 chr3 1554821 1554921 -216482237 + MER58 DNA MER1_type 13 113 -228 813 168 4 0 chr3 1555095 1555342 -216481816 + GA-rich Low_complexity Low_complexity 1 248 0 231 234 9 27 chr3 1555356 1555467 -216481691 + G-rich Low_complexity Low_complexity 3 111 0 1392 266 133 61 chr3 1555482 1556727 -216480431 + HAL1 LINE L1 1123 2465 -42 1038 137 28 11 chr3 1556727 1556909 -216480249 - L1MB5 LINE L1 -9 6165 5981 1392 266 133 61 chr3 1556909 1556949 -216480209 + HAL1 LINE L1 2465 2501 -6 1568 205 0 16 chr3 1556950 1557253 -216479905 - AluJb SINE Alu -14 298 1 1162 204 25 116 chr3 1557346 1557744 -216479414 + MLT1A1 LTR MaLR 4 365 0 326 273 78 19 chr3 1558014 1558168 -216478990 - MLT1J2 LTR MaLR -287 163 1 194 310 35 0 chr3 1558638 1558696 -216478462 + L2 LINE L2 3190 3249 -64 2383 97 3 3 chr3 1559278 1559589 -216477569 + AluSq SINE Alu 1 311 -2 416 208 40 94 chr3 1559867 1560016 -216477142 + LTR67 LTR ERVL 413 553 -4 559 329 27 4 chr3 1560332 1560557 -216476601 + MIR SINE MIR 32 261 -1 258 200 154 0 chr3 1560608 1560673 -216476485 + L1ME3 LINE L1 5795 5869 -293 1097 171 0 0 chr3 1560673 1560843 -216476315 - AluJb SINE Alu -14 298 129 825 225 56 70 chr3 1560848 1561174 -216475984 + L1ME3 LINE L1 5858 6164 -2 670 102 0 10 chr3 1561506 1561604 -216475554 + MER4A LTR ERV1 2 98 -566 2923 103 2 10 chr3 1561604 1562011 -216475147 + MER4A LTR ERV1 261 664 0 2179 119 0 0 chr3 1562046 1562348 -216474810 - AluSx SINE Alu -8 304 3 1739 153 14 21 chr3 1562474 1562761 -216474397 - AluJo SINE Alu -27 285 1 1851 176 0 3 chr3 1563006 1563308 -216473850 + AluJb SINE Alu 1 301 -11 855 152 0 0 chr3 1563358 1563490 -216473668 - AluSg/x SINE Alu -6 304 173 990 106 0 14 chr3 1563644 1563785 -216473373 - AluJo SINE Alu -157 155 17 371 319 71 18 chr3 1563787 1563956 -216473202 + MIR SINE MIR 84 261 -1 285 344 75 0 chr3 1564138 1564298 -216472860 - MIR SINE MIR -71 191 20 21 0 0 0 chr3 1564565 1564586 -216472572 + AT_rich Low_complexity Low_complexity 1 21 0 408 336 0 7 chr3 1564728 1564868 -216472290 + MIR3 SINE MIR 21 159 -49 188 227 23 0 chr3 1564883 1564927 -216472231 - L2 LINE L2 -15 3257 3213 308 265 219 20 chr3 1565520 1565826 -216471332 - L1MEc LINE L1 -4759 1687 1301 2288 107 0 0 chr3 1565830 1566121 -216471037 - AluSc SINE Alu -18 291 1 757 277 98 33 chr3 1566130 1566650 -216470508 - L1MEc LINE L1 -5029 1387 834 1056 150 48 0 chr3 1567324 1567491 -216469667 + FRAM SINE Alu 2 176 0 256 23 0 47 chr3 1567631 1567674 -216469484 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1639 102 0 0 chr3 1567737 1567942 -216469216 - AluSx SINE Alu -107 205 1 526 301 116 39 chr3 1567950 1568338 -216468820 - MLT1L LTR MaLR -3 612 195 1363 208 17 24 chr3 1569000 1569294 -216467864 - AluJo SINE Alu -9 293 2 938 92 8 0 chr3 1569294 1569413 -216467745 - AluJo SINE Alu -176 136 17 336 175 0 0 chr3 1571379 1571442 -216465716 + CT-rich Low_complexity Low_complexity 1 63 0 1513 176 0 22 chr3 1572545 1572812 -216464346 + AluJo SINE Alu 49 309 -3 2695 158 85 81 chr3 1573993 1574626 -216462532 - MER21B LTR ERV1 0 863 228 2221 115 3 10 chr3 1574727 1575031 -216462127 + AluSx SINE Alu 2 303 -9 240 197 45 45 chr3 1575298 1575364 -216461794 + MIR SINE MIR 112 177 -85 601 148 101 177 chr3 1575445 1575682 -216461476 + MER20 DNA MER1_type 1 219 0 258 329 71 14 chr3 1575866 1576006 -216461152 + MIR3 SINE MIR 21 168 -40 2114 137 3 0 chr3 1577118 1577417 -216459741 - AluSx SINE Alu -12 300 1 341 231 44 0 chr3 1577996 1578087 -216459071 - MIR SINE MIR -72 190 96 887 290 78 38 chr3 1578089 1578610 -216458548 + L2 LINE L2 2748 3296 -17 1764 194 61 33 chr3 1578785 1579243 -216457915 - Charlie1b DNA MER1_type 0 523 53 198 0 0 0 chr3 1580380 1580402 -216456756 + (T)n Simple_repeat Simple_repeat 1 22 0 576 314 8 47 chr3 1581010 1581243 -216455915 - MIR SINE MIR -35 227 5 1818 165 3 20 chr3 1581437 1581734 -216455424 + AluJb SINE Alu 3 294 -18 734 288 129 39 chr3 1581780 1582477 -216454681 - L2 LINE L2 -7 3265 2494 491 292 29 95 chr3 1582484 1582864 -216454294 - L2 LINE L2 0 3272 2918 672 330 9 0 chr3 1583481 1583708 -216453450 - MIR SINE MIR -24 238 10 1243 188 111 30 chr3 1583918 1584189 -216452969 - AluJo SINE Alu -17 295 3 237 316 26 0 chr3 1584275 1584351 -216452807 + L3 LINE CR1 1499 1576 -1 356 278 90 0 chr3 1584602 1584746 -216452412 - MIR SINE MIR 0 262 106 270 215 96 44 chr3 1585547 1585682 -216451476 - L1ME4a LINE L1 0 6121 5980 2050 141 0 3 chr3 1585729 1586026 -216451132 + AluSx SINE Alu 1 296 -16 523 284 41 50 chr3 1586036 1586254 -216450904 + MIR SINE MIR 47 262 0 185 380 133 0 chr3 1587637 1587750 -216449408 + MIR3 SINE MIR 44 171 -37 1455 165 51 0 chr3 1588373 1588610 -216448548 + AluSx SINE Alu 36 284 -28 249 108 0 0 chr3 1588610 1588647 -216448511 + (CA)n Simple_repeat Simple_repeat 2 38 0 764 256 59 35 chr3 1588700 1589075 -216448083 + L1M4 LINE L1 2114 2497 -3649 2187 142 87 25 chr3 1589232 1589633 -216447525 - MSTC LTR MaLR -2 426 1 368 195 73 0 chr3 1589635 1589717 -216447441 - L1ME1 LINE L1 -50 6116 6029 459 252 57 69 chr3 1589747 1590167 -216446991 + L1M4 LINE L1 2616 3030 -3116 * 6386 82 28 8 chr3 1590165 1591033 -216446125 - L1PA10 LINE L1 -8 6160 5276 397 273 71 24 chr3 1591033 1591330 -216445828 + L1M4 LINE L1 2982 3292 -2854 1845 186 169 2 chr3 1591344 1591769 -216445389 - MLT1D LTR MaLR -9 496 1 607 278 87 20 chr3 1591814 1592113 -216445045 + L1M4 LINE L1 3371 3689 -2457 2574 57 0 16 chr3 1593469 1593785 -216443373 + AluY SINE Alu 1 311 0 1298 149 36 5 chr3 1594881 1595102 -216442056 + L1PB4 LINE L1 5929 6156 0 731 264 60 16 chr3 1595666 1595916 -216441242 - MIR SINE MIR -1 261 1 320 254 150 68 chr3 1596219 1596499 -216440659 - L3 LINE CR1 -42 1535 1233 2014 149 0 19 chr3 1596546 1596862 -216440296 + AluJb SINE Alu 1 310 -2 225 301 243 0 chr3 1596862 1596965 -216440193 + MER5A DNA MER1_type 62 189 0 264 278 213 0 chr3 1596980 1597088 -216440070 - L2 LINE L2 -1 3271 3141 839 287 5 0 chr3 1597145 1597361 -216439797 - MIR SINE MIR -22 240 24 425 278 79 90 chr3 1597394 1597872 -216439286 - L2 LINE L2 -219 3053 2591 227 209 30 15 chr3 1598102 1598169 -216438989 + MIR SINE MIR 105 172 -90 198 0 0 0 chr3 1598421 1598443 -216438715 + (TTG)n Simple_repeat Simple_repeat 1 22 0 1786 148 11 0 chr3 1598444 1598715 -216438443 - AluJo SINE Alu -38 274 1 745 224 56 5 chr3 1599198 1599394 -216437764 + MIR SINE MIR 2 207 -55 348 284 123 0 chr3 1600981 1601136 -216436022 - MIR3 SINE MIR -15 193 20 1577 178 11 3 chr3 1601742 1602029 -216435129 + AluJo SINE Alu 1 289 -23 213 254 0 18 chr3 1602390 1602445 -216434713 + L2 LINE L2 3217 3270 -2 400 264 92 12 chr3 1602472 1602635 -216434523 + MIR SINE MIR 86 261 -1 264 373 156 0 chr3 1603889 1604078 -216433080 - MIR SINE MIR -2 260 46 209 212 0 0 chr3 1604281 1604314 -216432844 - L2 LINE L2 -39 3233 3201 658 300 39 26 chr3 1604330 1604560 -216432598 - MIR SINE MIR -18 244 12 261 0 0 0 chr3 1604990 1605019 -216432139 + (A)n Simple_repeat Simple_repeat 1 29 0 2785 127 59 7 chr3 1605570 1606010 -216431148 + L1MA8 LINE L1 5829 6291 0 772 196 124 0 chr3 1606270 1606423 -216430735 + MER5B DNA MER1_type 4 175 -3 217 191 0 0 chr3 1606520 1606562 -216430596 + MIR SINE MIR 189 230 -32 23 0 0 0 chr3 1607123 1607146 -216430012 + AT_rich Low_complexity Low_complexity 1 23 0 273 247 27 55 chr3 1607186 1607259 -216429899 + MER5B DNA MER1_type 107 177 -1 1786 154 0 62 chr3 1607424 1607749 -216429409 - AluJb SINE Alu -7 305 1 328 241 12 36 chr3 1609066 1609149 -216428009 - MIR SINE MIR -121 141 61 2279 106 0 0 chr3 1609793 1610094 -216427064 + AluSc SINE Alu 1 301 -8 349 324 20 0 chr3 1610173 1610275 -216426883 + MIR3 SINE MIR 66 169 -39 697 148 0 113 chr3 1610387 1610529 -216426629 - FLAM_A SINE Alu -7 126 1 469 300 40 40 chr3 1611171 1611414 -216425744 + MIR SINE MIR 3 243 -19 3062 71 8 0 chr3 1612924 1613302 -216423856 + L1PA7 LINE L1 5774 6154 0 2342 116 0 0 chr3 1613336 1613647 -216423511 + AluSx SINE Alu 1 311 -1 186 43 0 0 chr3 1614565 1614588 -216422570 + (TCTCC)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chr3 1617107 1617142 -216420016 + AT_rich Low_complexity Low_complexity 1 35 0 2477 64 0 0 chr3 1618846 1619144 -216418014 - AluY SINE Alu -13 298 1 409 287 149 37 chr3 1619796 1619984 -216417174 - MIR SINE MIR -27 235 27 213 209 0 23 chr3 1620549 1620592 -216416566 + (CA)n Simple_repeat Simple_repeat 1 42 0 299 295 215 34 chr3 1621610 1621759 -216415399 + MER5A DNA MER1_type 14 189 0 327 309 29 37 chr3 1622022 1622158 -216415000 + L2 LINE L2 3138 3272 0 194 254 28 56 chr3 1622235 1622306 -216414852 + MIR3 SINE MIR 126 194 -14 342 248 94 16 chr3 1622643 1622771 -216414387 + MER5A DNA MER1_type 34 179 -10 2026 153 3 0 chr3 1623033 1623334 -216413824 - AluJb SINE Alu -10 302 1 433 283 29 7 chr3 1623968 1624106 -216413052 - L1ME3A LINE L1 -8 6162 6022 1435 295 142 10 chr3 1625084 1625831 -216411327 - L2 LINE L2 -3 3310 2447 3880 173 6 6 chr3 1625836 1626500 -216410658 + L1MB2 LINE L1 5507 6170 -1 262 200 88 0 chr3 1626500 1626580 -216410578 + Charlie7 DNA MER1_type 637 723 -1889 1134 231 80 15 chr3 1626694 1627018 -216410140 - L2 LINE L2 -848 2466 2122 1784 143 37 10 chr3 1627439 1627733 -216409425 + AluJo SINE Alu 1 302 -10 197 108 27 0 chr3 1627735 1627772 -216409386 + GA-rich Low_complexity Low_complexity 3 40 0 434 251 168 72 chr3 1627824 1628170 -216408988 + MLT1H LTR MaLR 23 401 -148 26 64 0 0 chr3 1628433 1628480 -216408678 + AT_rich Low_complexity Low_complexity 1 47 0 25 51 0 0 chr3 1629723 1629762 -216407396 + AT_rich Low_complexity Low_complexity 1 39 0 1543 137 115 46 chr3 1629909 1630253 -216406905 + MSTA LTR MaLR 3 428 0 281 335 120 50 chr3 1630262 1630686 -216406472 + L2 LINE L2 2818 3271 -1 1781 159 14 7 chr3 1631138 1631434 -216405724 + AluJb SINE Alu 5 302 -10 805 258 60 1 chr3 1631857 1632083 -216405075 - MIR SINE MIR -6 256 20 372 43 0 0 chr3 1632394 1632440 -216404718 + (TG)n Simple_repeat Simple_repeat 2 47 0 270 319 14 21 chr3 1633820 1633961 -216403197 + MIR SINE MIR 113 252 -10 281 0 0 0 chr3 1634139 1634170 -216402988 + U7 snRNA snRNA 2 32 -31 275 167 0 0 chr3 1634189 1634231 -216402927 + MLT1C LTR MaLR 28 69 -321 1331 180 214 0 chr3 1634231 1634525 -216402633 - MLT1A1 LTR MaLR 0 365 9 * 1537 198 95 29 chr3 1634521 1634797 -216402361 + MLT1C LTR MaLR 63 372 -95 2400 88 3 0 chr3 1634797 1635104 -216402054 + AluSx SINE Alu 1 308 -4 1537 198 95 29 chr3 1635104 1635205 -216401953 + MLT1C LTR MaLR 372 465 -2 1872 150 7 3 chr3 1635514 1635800 -216401358 - AluJb SINE Alu -15 297 11 962 280 37 47 chr3 1635887 1636316 -216400842 + L2 LINE L2 2886 3310 -3 23 0 0 0 chr3 1636619 1636642 -216400516 + AT_rich Low_complexity Low_complexity 1 23 0 1118 99 215 11 chr3 1636831 1636925 -216400233 - MER30 DNA MER1_type 0 230 156 225 0 0 0 chr3 1636925 1636950 -216400208 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1118 99 215 11 chr3 1636950 1637046 -216400112 - MER30 DNA MER1_type -74 156 1 941 207 84 0 chr3 1638901 1639104 -216398054 - MIR SINE MIR -31 231 12 436 274 160 9 chr3 1639157 1639376 -216397782 + MIR SINE MIR 5 256 -6 366 279 75 87 chr3 1639719 1639887 -216397271 + L1MC5 LINE L1 7552 7721 -284 749 168 26 0 chr3 1639887 1640000 -216397158 + FLAM_A SINE Alu 4 119 -14 366 279 75 87 chr3 1640000 1640303 -216396855 + L1MC5 LINE L1 7721 7948 -57 311 250 70 35 chr3 1640645 1640817 -216396341 - HAL1 LINE L1 -356 2151 1974 3035 74 0 6 chr3 1641566 1641932 -216395226 + THE1B LTR MaLR 1 364 0 201 264 38 0 chr3 1642052 1642105 -216395053 + MIR SINE MIR 167 221 -41 3872 154 10 56 chr3 1642203 1642932 -216394226 + L1MC1 LINE L1 5636 6330 -3 685 307 95 4 chr3 1643043 1643274 -216393884 + MIR SINE MIR 1 252 -10 350 286 25 25 chr3 1643282 1643401 -216393757 + L1MC/D LINE L1 5699 5817 -1991 630 157 9 0 chr3 1643417 1643525 -216393633 - L1MC1 LINE L1 -473 5860 5752 294 228 44 88 chr3 1643704 1643818 -216393340 + MIR SINE MIR 40 148 -60 236 94 19 57 chr3 1644506 1644559 -216392599 + L2 LINE L2 3192 3242 -30 185 200 0 0 chr3 1644703 1644733 -216392425 - L2 LINE L2 -26 3287 3258 361 219 58 2 chr3 1644802 1644905 -216392253 + MIR SINE MIR 42 152 -56 1697 153 3 36 chr3 1644995 1645137 -216392021 + AluJb SINE Alu 1 129 -183 2391 99 0 0 chr3 1645137 1645440 -216391718 + AluSq SINE Alu 1 303 -10 1697 153 3 36 chr3 1645440 1645598 -216391560 + AluJb SINE Alu 129 291 -21 211 318 135 56 chr3 1645957 1646083 -216391075 - L2 LINE L2 -3 3269 3134 1006 184 35 6 chr3 1646098 1646272 -216390886 + MER21B LTR ERV1 1 179 -684 482 294 150 7 chr3 1646888 1647041 -216390117 - MER5A DNA MER1_type -6 183 9 365 250 95 87 chr3 1647057 1647241 -216389917 + MER112 DNA MER1_type 1 189 -67 1638 175 10 36 chr3 1647241 1647549 -216389609 + AluJo SINE Alu 1 300 -12 365 250 95 87 chr3 1647549 1647616 -216389542 + MER112 DNA MER1_type 189 254 -2 825 188 38 42 chr3 1647849 1647900 -216389258 + L1MC5 LINE L1 6671 6721 -1240 1696 190 3 10 chr3 1647900 1648205 -216388953 + AluJo SINE Alu 1 303 -9 825 188 38 42 chr3 1648205 1648366 -216388792 + L1MC5 LINE L1 6721 6882 -1079 228 237 17 0 chr3 1648384 1648443 -216388715 + L1MC5 LINE L1 7189 7248 -713 623 168 0 35 chr3 1648487 1648600 -216388558 + FLAM_A SINE Alu 22 130 -12 720 221 129 40 chr3 1648600 1648872 -216388286 + L1MC5 LINE L1 7313 7608 -353 21 82 0 0 chr3 1648872 1648921 -216388237 + AT_rich Low_complexity Low_complexity 1 49 0 692 218 113 14 chr3 1649241 1649383 -216387775 - FAM SINE Alu -19 166 11 1152 255 99 49 chr3 1649898 1650177 -216386981 + L2 LINE L2 2804 3119 -194 3769 153 60 6 chr3 1650177 1650842 -216386316 - L1MB3 LINE L1 -2 6181 5481 1152 255 99 49 chr3 1650842 1651048 -216386110 + L2 LINE L2 3119 3313 0 195 42 0 0 chr3 1652062 1652086 -216385072 + (CA)n Simple_repeat Simple_repeat 1 24 0 242 290 86 0 chr3 1652597 1652690 -216384468 + MIR SINE MIR 37 137 -125 226 96 19 19 chr3 1654945 1654997 -216382161 + (TCC)n Simple_repeat Simple_repeat 1 52 0 277 203 188 0 chr3 1656074 1656143 -216381015 - L2 LINE L2 -4 3268 3187 198 103 0 0 chr3 1656194 1656223 -216380935 + (TAA)n Simple_repeat Simple_repeat 3 31 0 310 279 79 10 chr3 1656298 1656417 -216380741 - MIR SINE MIR -66 142 37 216 185 37 19 chr3 1656495 1656549 -216380609 + MIR SINE MIR 82 136 -72 420 243 207 36 chr3 1656688 1656896 -216380262 - MIR SINE MIR -1 261 20 1295 180 121 0 chr3 1657877 1658166 -216378992 + MER33 DNA MER1_type 1 324 0 1045 73 66 20 chr3 1658789 1658940 -216378218 + L1MA1 LINE L1 6145 6302 0 1621 248 83 54 chr3 1660147 1660243 -216376915 + L1MC4 LINE L1 7102 7194 -848 1989 155 0 3 chr3 1660243 1660547 -216376611 + AluJb SINE Alu 1 303 -9 1621 248 83 54 chr3 1660547 1660955 -216376203 + L1MC4 LINE L1 7194 7638 -404 712 154 24 0 chr3 1660955 1661078 -216376080 + L1MA6 LINE L1 6175 6300 0 1621 248 83 54 chr3 1661078 1661331 -216375827 + L1MC4 LINE L1 7638 7882 -160 1140 123 0 0 chr3 1661338 1661493 -216375665 + AluSg/x SINE Alu 142 296 -16 1921 139 3 3 chr3 1661860 1662148 -216375010 + AluSx SINE Alu 1 288 -24 207 100 0 0 chr3 1663106 1663136 -216374022 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1727 117 62 25 chr3 1663215 1663489 -216373669 + AluSx SINE Alu 12 295 -17 204 158 0 0 chr3 1663489 1663527 -216373631 + G-rich Low_complexity Low_complexity 1 38 0 1841 153 0 4 chr3 1663636 1663933 -216373225 + AluSx SINE Alu 9 304 0 970 191 182 22 chr3 1664121 1664346 -216372812 + AluJo SINE Alu 29 289 -23 2206 133 0 0 chr3 1664426 1664734 -216372424 + AluSx SINE Alu 1 308 -4 556 114 13 0 chr3 1664800 1664879 -216372279 + MADE1 DNA Mariner 1 80 0 2230 110 0 3 chr3 1665293 1665601 -216371557 + AluSx SINE Alu 1 307 -5 201 303 34 22 chr3 1665871 1665960 -216371198 + L2 LINE L2 3219 3308 -5 21 36 0 0 chr3 1666042 1666070 -216371088 + AT_rich Low_complexity Low_complexity 1 28 0 2041 148 13 0 chr3 1666116 1666419 -216370739 + AluJb SINE Alu 1 307 -5 2754 134 28 77 chr3 1666525 1666768 -216370390 + L1MB8 LINE L1 5632 5885 -293 2263 63 40 27 chr3 1666768 1667069 -216370089 + AluSq SINE Alu 1 305 -8 2754 134 28 77 chr3 1667069 1667367 -216369791 + L1MB8 LINE L1 5885 6146 -32 1256 188 96 11 chr3 1667367 1667638 -216369520 - AluJo SINE Alu -18 294 1 2754 134 28 77 chr3 1667638 1667670 -216369488 + L1MB8 LINE L1 6146 6178 0 184 247 398 11 chr3 1667680 1667773 -216369385 + MIR SINE MIR 49 177 -85 387 0 0 0 chr3 1667833 1667876 -216369282 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1326 154 5 23 chr3 1667876 1668097 -216369061 - AluJo SINE Alu -32 280 64 571 261 69 42 chr3 1668558 1668776 -216368382 + MIR SINE MIR 29 262 0 262 275 137 30 chr3 1668943 1669074 -216368084 - MIR3 SINE MIR -48 160 16 255 103 0 0 chr3 1669147 1669186 -216367972 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1855 95 4 58 chr3 1669199 1669473 -216367685 - AluSx SINE Alu -53 259 1 24 0 0 0 chr3 1669479 1669503 -216367655 + AT_rich Low_complexity Low_complexity 1 24 0 491 296 87 6 chr3 1670283 1670455 -216366703 - MIR SINE MIR -16 246 61 407 190 0 25 chr3 1670487 1670566 -216366592 + MER5A DNA MER1_type 4 80 -109 822 216 282 25 chr3 1670569 1670810 -216366348 + AluSx SINE Alu 9 311 -1 622 212 18 0 chr3 1670810 1670923 -216366235 + MER5A DNA MER1_type 72 186 -3 2041 183 21 50 chr3 1671442 1671907 -216365251 - MLT1D LTR MaLR 0 505 54 578 223 159 19 chr3 1673108 1673265 -216363893 + MER5A DNA MER1_type 1 179 -10 2624 39 3 0 chr3 1673905 1674215 -216362943 + AluY SINE Alu 1 311 0 201 276 53 0 chr3 1674523 1674599 -216362559 - MIR SINE MIR 0 262 183 839 213 33 0 chr3 1724628 1724872 -216312286 + L1M1 LINE L1 3466 3717 -3848 942 55 16 8 chr3 1724872 1725000 -216312158 + AluY SINE Alu 181 309 -2 3964 206 25 16 chr3 1725000 1726000 -216311158 + L1M1 LINE L1 3711 4719 -2846 345 276 57 0 chr3 1726738 1726843 -216310315 - MIR SINE MIR -2 260 150 824 168 28 10 chr3 1726843 1727125 -216310033 - MLT1A1 LTR MaLR 0 365 3 483 198 83 0 chr3 1727126 1727222 -216309936 - MIR SINE MIR -107 155 52 2209 115 0 0 chr3 1727690 1727986 -216309172 - AluSx SINE Alu -16 296 1 2261 116 0 0 chr3 1728053 1728347 -216308811 - AluSx SINE Alu -18 294 1 1805 177 17 0 chr3 1728882 1729181 -216307977 - AluJb SINE Alu -8 304 1 2124 124 7 23 chr3 1729239 1729546 -216307612 + AluSx SINE Alu 1 302 -10 552 305 53 10 chr3 1729704 1730098 -216307060 + L1MEc LINE L1 1243 1653 -4954 554 308 108 71 chr3 1730353 1730843 -216306315 + L2 LINE L2 2805 3312 -1 2572 34 0 3 chr3 1731288 1731586 -216305572 - AluY SINE Alu -14 297 1 230 183 0 17 chr3 1732399 1732459 -216304699 + L1MEc LINE L1 2006 2064 -4362 252 333 0 0 chr3 1732460 1732526 -216304632 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 316 266 0 43 chr3 1732526 1732620 -216304538 + L1MC4 LINE L1 6614 6703 -1339 301 322 0 0 chr3 1732600 1732687 -216304471 - L1MC4 LINE L1 -1339 6703 6617 * 213 231 0 0 chr3 1732689 1732728 -216304430 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 311 322 0 0 chr3 1732728 1732818 -216304340 - L1MC4 LINE L1 -1339 6703 6614 301 322 0 0 chr3 1732746 1732836 -216304322 + L1MC4 LINE L1 6614 6703 -1339 * 659 232 0 11 chr3 1732869 1733046 -216304112 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 977 112 0 0 chr3 1733069 1733194 -216303964 - AluSq/x SINE Alu -188 125 1 308 155 0 0 chr3 1733194 1733252 -216303906 + L1MA7 LINE L1 4326 4383 -1763 5309 136 28 18 chr3 1733295 1734526 -216302632 + L1MA7 LINE L1 4585 5836 -455 2330 79 0 3 chr3 1734526 1734830 -216302328 + AluY SINE Alu 1 303 -8 5309 136 28 18 chr3 1734830 1735291 -216301867 + L1MA7 LINE L1 5836 6291 0 420 236 21 103 chr3 1735881 1736114 -216301044 + L1MC4a LINE L1 5722 5935 -1873 1309 100 0 0 chr3 1736461 1736631 -216300527 + AluY SINE Alu 137 306 -5 4140 179 22 10 chr3 1736631 1737334 -216299824 - L1 LINE L1 -1925 4221 3502 2163 106 0 3 chr3 1737334 1737642 -216299516 - AluSx SINE Alu 0 307 1 4140 179 22 10 chr3 1737642 1737831 -216299327 - L1 LINE L1 -2644 3502 3317 4283 148 26 1 chr3 1737989 1738744 -216298414 - L1MB7 LINE L1 -20 6164 5391 328 301 11 11 chr3 1738784 1738877 -216298281 - L2 LINE L2 -43 3229 3137 1462 170 52 28 chr3 1739113 1739242 -216297916 + AluJb SINE Alu 1 125 -187 2457 70 0 3 chr3 1739242 1739543 -216297615 + AluSx SINE Alu 1 300 -12 1462 170 52 28 chr3 1739543 1739701 -216297457 + AluJb SINE Alu 125 295 -17 766 245 92 40 chr3 1740255 1740504 -216296654 - MIR SINE MIR 0 262 1 2236 78 17 0 chr3 1741087 1741382 -216295776 + AluY SINE Alu 1 300 -11 1470 203 108 16 chr3 1741529 1741569 -216295589 + Charlie4a DNA MER1_type 30 65 -1896 569 91 0 0 chr3 1741569 1741646 -216295512 + MADE1 DNA Mariner 2 78 -2 1470 203 108 16 chr3 1741646 1741960 -216295198 + Charlie4a DNA MER1_type 65 434 -1527 205 27 81 0 chr3 1741960 1741997 -216295161 + T-rich Low_complexity Low_complexity 5 44 0 1470 203 108 16 chr3 1741997 1742075 -216295083 + Charlie4a DNA MER1_type 434 503 -5 806 333 71 50 chr3 1742120 1742558 -216294600 + L2 LINE L2 2826 3272 0 187 343 74 40 chr3 1742590 1742813 -216294345 - L2 LINE L2 -913 2401 2160 363 325 16 26 chr3 1742813 1743004 -216294154 + MER5A DNA MER1_type 1 189 0 187 343 74 40 chr3 1743004 1743130 -216294028 - L2 LINE L2 -1154 2160 2040 633 204 95 41 chr3 1745551 1745845 -216291313 - MER113 DNA MER1_type? -37 484 175 420 266 30 39 chr3 1745881 1746084 -216291074 - L1ME3A LINE L1 -7 6163 5963 1517 190 55 92 chr3 1746172 1746552 -216290606 - L1MC5 LINE L1 -436 7525 7132 2592 110 6 3 chr3 1746552 1746915 -216290243 - THE1B LTR MaLR 0 364 1 1517 190 55 92 chr3 1746915 1747106 -216290052 - L1MC5 LINE L1 -829 7132 6976 1238 192 7 19 chr3 1747106 1747377 -216289781 - L1MD2 LINE L1 -2 6357 6090 1517 190 55 92 chr3 1747377 1747425 -216289733 - L1MC5 LINE L1 -985 6976 6928 1801 165 0 38 chr3 1747425 1747741 -216289417 + AluJo SINE Alu 1 304 -8 306 190 25 0 chr3 1747808 1747887 -216289271 - L1MB7 LINE L1 -10 6174 6094 374 222 40 20 chr3 1747959 1748058 -216289100 - L1MB8 LINE L1 -103 6075 5975 561 218 19 46 chr3 1748147 1748301 -216288857 - L1MC5 LINE L1 -1183 6859 6630 565 317 50 32 chr3 1748744 1749276 -216287882 - HAL1b LINE L1 -725 623 79 1836 173 3 6 chr3 1749276 1749589 -216287569 - AluJo SINE Alu 0 312 1 565 317 50 32 chr3 1749589 1749617 -216287541 - HAL1b LINE L1 -1269 79 53 1920 141 3 16 chr3 1749773 1750077 -216287081 - AluSx SINE Alu -12 300 1 251 300 14 0 chr3 1750375 1750445 -216286713 + CT-rich Low_complexity Low_complexity 2 72 0 2224 19 0 15 chr3 1750552 1750813 -216286345 + AluY SINE Alu 41 297 -14 3496 139 2 13 chr3 1751523 1752056 -216285102 - MER1A DNA MER1_type 0 527 1 2394 73 0 29 chr3 1752806 1753119 -216284039 - AluSq SINE Alu -9 304 1 552 183 87 32 chr3 1753218 1753344 -216283814 + FLAM_C SINE Alu 1 133 0 240 287 58 19 chr3 1753448 1753534 -216283624 + MIR SINE MIR 22 112 -96 1910 135 0 10 chr3 1753534 1753830 -216283328 - AluJo SINE Alu -19 293 1 240 287 58 19 chr3 1753830 1753842 -216283316 + MIR SINE MIR 112 122 -86 653 309 79 14 chr3 1753842 1754473 -216282685 - L1MDa LINE L1 -3049 3080 2409 1374 180 0 42 chr3 1754475 1754781 -216282377 - MER31B LTR ERV1 -173 293 1 21 100 0 0 chr3 1754857 1754927 -216282231 + AT_rich Low_complexity Low_complexity 1 70 0 387 249 58 39 chr3 1754938 1755104 -216282054 - L1MDa LINE L1 -3711 2418 2257 2250 123 7 0 chr3 1755104 1755414 -216281744 - AluSx SINE Alu 0 312 1 387 249 58 39 chr3 1755414 1755622 -216281536 - L1MDa LINE L1 -3872 2257 2038 373 253 150 60 chr3 1755905 1756359 -216280799 - L1MDa LINE L1 -4585 1725 1231 308 237 40 0 chr3 1756391 1756467 -216280691 - L1MDa LINE L1 -3203 2926 2848 351 213 27 87 chr3 1756490 1756640 -216280518 - L1MDa LINE L1 -4929 1190 1050 298 207 62 41 chr3 1756653 1756798 -216280360 - L1MDa LINE L1 -4121 2419 2272 813 152 0 29 chr3 1756933 1757071 -216280087 - AluJb SINE Alu -178 134 1 1748 225 92 42 chr3 1757084 1757846 -216279312 - L1MDa LINE L1 -4421 2119 1164 2047 110 3 10 chr3 1757846 1758145 -216279013 + AluSx SINE Alu 3 299 -13 1748 225 92 42 chr3 1758145 1758235 -216278923 - L1MDa LINE L1 -5376 1164 1080 328 311 10 19 chr3 1758413 1758516 -216278642 + MIR SINE MIR 149 250 -12 1916 147 72 0 chr3 1758775 1759108 -216278050 - L1MB4 LINE L1 -8 6172 5816 507 295 66 56 chr3 1760186 1760488 -216276670 - L2 LINE L2 -1 3312 3008 303 273 293 59 chr3 1760486 1760926 -216276232 - L2 LINE L2 -414 2900 2358 * 477 342 96 21 chr3 1760887 1761168 -216275990 + L3 LINE CR1 1181 1482 -95 363 244 37 0 chr3 1761171 1761253 -216275905 + MER94 DNA DNA 1 85 -49 2630 203 21 20 chr3 1761260 1761950 -216275208 - LTR27 LTR ERV1 -3 633 3 189 420 37 0 chr3 1762021 1762102 -216275056 + L3 LINE CR1 1484 1567 -10 265 278 14 0 chr3 1762407 1762479 -216274679 + L2 LINE L2 3241 3313 0 438 261 6 85 chr3 1762565 1762730 -216274428 - MIR SINE MIR -78 184 33 300 261 67 8 chr3 1762730 1762849 -216274309 - MER103 DNA DNA -31 135 10 313 305 162 24 chr3 1762927 1763094 -216274064 + MIR3 SINE MIR 8 197 -11 367 253 103 79 chr3 1763907 1764160 -216272998 + L1ME4a LINE L1 5624 5882 -239 1833 155 0 0 chr3 1764427 1764711 -216272447 + AluJo SINE Alu 11 294 -18 311 282 75 62 chr3 1764716 1764957 -216272201 - L1ME4a LINE L1 -70 6051 5808 309 171 100 0 chr3 1764970 1765040 -216272118 - L1ME4a LINE L1 -500 5621 5545 2337 92 10 104 chr3 1766948 1767350 -216269808 + THE1B LTR MaLR 1 364 0 997 238 17 26 chr3 1767690 1767921 -216269237 - MIR SINE MIR -27 235 7 1082 180 15 40 chr3 1767991 1768191 -216268967 + MER20 DNA MER1_type 25 219 0 2305 150 43 26 chr3 1768996 1769415 -216267743 - MSTB LTR MaLR 0 426 1 22 70 0 0 chr3 1769415 1769458 -216267700 + AT_rich Low_complexity Low_complexity 1 43 0 221 205 0 0 chr3 1769523 1769562 -216267596 + L2 LINE L2 3262 3300 -13 1896 96 64 0 chr3 1769686 1769757 -216267401 - L1PB1 LINE L1 -285 5866 5801 261 0 0 0 chr3 1769757 1769786 -216267372 + (TG)n Simple_repeat Simple_repeat 2 30 0 1896 96 64 0 chr3 1769786 1769995 -216267163 - L1PB1 LINE L1 -350 5801 5568 1893 86 67 0 chr3 1769995 1770259 -216266899 + L1PB1 LINE L1 5864 6149 -2 31 26 0 0 chr3 1770260 1770298 -216266860 + AT_rich Low_complexity Low_complexity 1 38 0 859 230 47 74 chr3 1770357 1770652 -216266506 + L1MC/D LINE L1 5589 5874 -390 26 0 0 0 chr3 1770673 1770699 -216266459 + AT_rich Low_complexity Low_complexity 1 26 0 1766 142 0 17 chr3 1771281 1771576 -216265582 + AluJb SINE Alu 1 290 -22 631 276 57 38 chr3 1771713 1771923 -216265235 - MIR SINE MIR -34 228 15 328 267 82 44 chr3 1771993 1772180 -216264978 - MIR SINE MIR -33 229 40 181 206 73 88 chr3 1772268 1772336 -216264822 + MIR SINE MIR 119 185 -77 2193 84 0 3 chr3 1772370 1772669 -216264489 + AluY SINE Alu 1 298 -13 326 170 0 0 chr3 1774016 1774069 -216263089 + L2 LINE L2 3220 3272 0 535 287 96 20 chr3 1774314 1774565 -216262593 - LTR16A LTR ERVL -1 449 180 26 0 0 0 chr3 1775683 1775709 -216261449 + AT_rich Low_complexity Low_complexity 1 26 0 416 260 82 7 chr3 1776123 1776269 -216260889 - L1ME4a LINE L1 -5 6116 5960 1182 231 20 4 chr3 1776279 1776530 -216260628 - MIR SINE MIR 0 262 8 342 275 126 60 chr3 1776551 1776915 -216260243 - L1ME4a LINE L1 -177 5944 5557 770 188 79 50 chr3 1777003 1777205 -216259953 - MLT1A1 LTR MaLR -1 364 157 1978 131 3 0 chr3 1777223 1777533 -216259625 - AluSx SINE Alu 0 311 1 315 311 43 30 chr3 1777534 1777698 -216259460 - L1ME LINE L1 -454 5667 5502 1860 136 58 0 chr3 1777807 1778102 -216259056 - AluSx SINE Alu 0 312 1 1049 171 0 0 chr3 1778721 1778885 -216258273 - AluJb SINE Alu -18 294 131 1140 140 0 6 chr3 1778899 1779078 -216258080 + AluSx SINE Alu 1 178 -134 2155 96 0 10 chr3 1780712 1781013 -216256145 + AluSg SINE Alu 1 298 -12 261 98 0 0 chr3 1787603 1787644 -216249514 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr3 1787692 1787724 -216249434 + AT_rich Low_complexity Low_complexity 1 32 0 236 350 49 16 chr3 1788444 1788567 -216248591 - L2 LINE L2 -4 3268 3142 486 241 7 78 chr3 1789210 1789351 -216247807 + MIR SINE MIR 37 167 -95 1202 135 5 0 chr3 1790687 1790879 -216246279 - AluSg/x SINE Alu -6 306 114 663 201 14 21 chr3 1792140 1792284 -216244874 + Tigger3(Golem) DNA MER2_type 2887 3029 0 924 147 26 0 chr3 1792680 1792836 -216244322 + AluSg/x SINE Alu 120 279 -31 429 20 0 0 chr3 1792839 1792889 -216244269 + (CA)n Simple_repeat Simple_repeat 2 51 0 1631 149 101 0 chr3 1793363 1793677 -216243481 + MER2 DNA MER2_type 1 345 0 612 162 40 23 chr3 1800241 1800550 -216236608 + (TTAGGG)n Simple_repeat Simple_repeat 1 314 0 200 250 135 0 chr3 1800860 1800912 -216236246 + MIR SINE MIR 86 144 -118 2258 151 41 17 chr3 1801741 1802157 -216235001 - MSTB1 LTR MaLR -6 426 1 296 280 70 32 chr3 1802785 1802942 -216234216 - L1MC5 LINE L1 -91 7870 7708 1977 109 16 13 chr3 1803727 1804031 -216233127 + AluSx SINE Alu 2 306 -6 214 323 0 15 chr3 1804456 1804521 -216232637 + MIR SINE MIR 186 249 -13 2262 97 0 0 chr3 1806689 1806999 -216230159 + AluSg SINE Alu 1 310 0 1296 190 37 53 chr3 1807537 1807837 -216229321 + AluJb SINE Alu 1 295 -7 271 315 61 42 chr3 1808044 1808209 -216228949 - L2 LINE L2 -17 3296 3129 253 244 0 13 chr3 1809345 1809423 -216227735 - MLT1B LTR MaLR -234 156 80 1907 120 0 7 chr3 1810645 1810919 -216226239 - AluSx SINE Alu -40 272 1 2370 113 49 0 chr3 1817693 1818039 -216219119 + THE1B LTR MaLR 2 364 0 565 121 0 44 chr3 1820626 1820717 -216216441 - AluSp/q SINE Alu -16 297 211 409 301 90 48 chr3 1820993 1821370 -216215788 + L1ME LINE L1 5259 5662 -459 2266 103 3 23 chr3 1821370 1821680 -216215478 + AluSx SINE Alu 3 306 -6 409 301 90 48 chr3 1821680 1821780 -216215378 + L1ME LINE L1 5662 5756 -365 363 303 113 33 chr3 1822572 1822759 -216214399 + MIR3 SINE MIR 2 203 -5 504 296 87 24 chr3 1825068 1825274 -216211884 - MIR SINE MIR 0 262 44 2165 119 6 16 chr3 1826643 1826816 -216210342 - AluSx SINE Alu -4 308 138 1932 124 72 0 chr3 1826816 1826987 -216210171 - AluSq SINE Alu -2 311 109 188 35 35 0 chr3 1826987 1827016 -216210142 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1932 124 72 0 chr3 1827016 1827134 -216210024 - AluSq SINE Alu -204 109 1 2165 119 6 16 chr3 1827134 1827271 -216209887 - AluSx SINE Alu -174 138 1 420 293 40 59 chr3 1827271 1827593 -216209565 - L1MCa LINE L1 -3863 2563 2242 520 271 50 14 chr3 1829864 1830048 -216207110 - MIR SINE MIR -6 256 68 191 253 36 96 chr3 1831654 1831737 -216205421 - L2 LINE L2 -2 3311 3234 438 220 47 27 chr3 1832276 1832426 -216204732 + CT-rich Low_complexity Low_complexity 5 157 0 902 83 61 8 chr3 1834263 1834395 -216202763 + MER85 DNA T2_type 1 139 0 929 76 8 23 chr3 1835489 1835621 -216201537 + AluY SINE Alu 56 185 -126 339 358 34 22 chr3 1836066 1836245 -216200913 + MIR3 SINE MIR 19 199 -9 21 0 0 0 chr3 1837012 1837033 -216200125 + GC_rich Low_complexity Low_complexity 1 21 0 505 231 12 0 chr3 1838926 1839099 -216198059 + (CAT)n Simple_repeat Simple_repeat 3 177 0 729 213 4 0 chr3 1839125 1839366 -216197792 + (CAT)n Simple_repeat Simple_repeat 1 242 0 33 0 0 0 chr3 1840017 1840050 -216197108 + AT_rich Low_complexity Low_complexity 1 33 0 616 203 8 17 chr3 1841210 1841328 -216195830 - FLAM_A SINE Alu -24 118 2 2133 111 4 0 chr3 1841473 1841789 -216195369 + AluSx SINE Alu 1 317 0 226 441 31 31 chr3 1842247 1842374 -216194784 + polypurine Low_complexity Low_complexity 5 131 0 378 138 25 25 chr3 1845135 1845215 -216191943 - AluS SINE Alu -223 80 1 332 43 22 0 chr3 1847558 1847604 -216189554 + (TAA)n Simple_repeat Simple_repeat 1 47 0 258 56 0 0 chr3 1847642 1847678 -216189480 + (TG)n Simple_repeat Simple_repeat 2 37 0 430 339 20 8 chr3 1849386 1849745 -216187413 + (TGGG)n Simple_repeat Simple_repeat 1 363 0 250 341 8 8 chr3 1849719 1849851 -216187307 + G-rich Low_complexity Low_complexity 5 136 0 * 688 204 97 62 chr3 1851317 1851493 -216185665 + AluJo SINE Alu 2 183 -129 2205 113 0 0 chr3 1852554 1852836 -216184322 - AluSq SINE Alu -31 282 1 298 393 43 34 chr3 1854093 1854510 -216182648 - L2 LINE L2 -585 2729 2309 752 234 6 12 chr3 1854567 1854734 -216182424 - MIR SINE MIR -23 239 74 10229 45 6 10 chr3 1854738 1856088 -216181070 - L1P LINE L1 -758 5388 4044 261 57 0 0 chr3 1857229 1857264 -216179894 + (CA)n Simple_repeat Simple_repeat 2 36 0 488 354 28 6 chr3 1858347 1858528 -216178630 + MIR SINE MIR 3 187 -75 2315 153 88 7 chr3 1860091 1860523 -216176635 - MLT1C LTR MaLR 0 467 1 1184 233 102 32 chr3 1861256 1861728 -216175430 - MLT1D LTR MaLR 0 505 1 1478 145 35 14 chr3 1862371 1862654 -216174504 + L1MB3 LINE L1 5893 6181 -2 244 229 60 78 chr3 1862880 1863046 -216174112 + LTR16A1 LTR ERVL 245 407 -50 2074 149 10 0 chr3 1863406 1863715 -216173443 + AluSx SINE Alu 1 312 0 814 202 140 36 chr3 1863993 1864300 -216172858 - LTR37A LTR ERV1 -4 422 84 827 201 0 18 chr3 1864307 1864471 -216172687 + FRAM SINE Alu 3 163 -3 1509 190 4 11 chr3 1864535 1864809 -216172349 + AluJo SINE Alu 40 311 -1 392 234 128 0 chr3 1864930 1865071 -216172087 + MER103 DNA DNA 8 166 0 539 350 16 40 chr3 1865686 1865936 -216171222 + MIR SINE MIR 9 250 -12 450 202 42 8 chr3 1866107 1866226 -216170932 - MER113 DNA MER1_type? -397 124 2 319 286 216 12 chr3 1866230 1866384 -216170774 + L3 LINE CR1 1288 1409 -168 2688 181 11 29 chr3 1866384 1866904 -216170254 + MLT2B2 LTR ERVL 1 511 -4 319 286 216 12 chr3 1866904 1866990 -216170168 + L3 LINE CR1 1409 1577 0 375 60 0 0 chr3 1867486 1867536 -216169622 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 248 90 35 chr3 1867890 1868035 -216169123 - MIR SINE MIR -36 226 74 339 260 72 27 chr3 1868079 1868230 -216168928 - MIR3 SINE MIR -30 178 28 190 225 0 0 chr3 1868402 1868442 -216168716 - MIR SINE MIR -13 249 210 288 360 0 0 chr3 1868543 1868643 -216168515 - MIR SINE MIR -76 132 33 322 255 39 98 chr3 1868803 1868956 -216168202 + L1M2a LINE L1 610 753 -6415 258 328 61 30 chr3 1869464 1869595 -216167563 + MIR SINE MIR 21 155 -107 567 243 69 129 chr3 1869751 1870184 -216166974 - LTR16C LTR ERVL -3 488 82 364 219 61 0 chr3 1870250 1870332 -216166826 + L2 LINE L2 3186 3272 0 284 233 50 0 chr3 1870542 1870602 -216166556 + L2 LINE L2 3198 3260 -12 322 218 65 73 chr3 1870943 1871249 -216165909 + MLT1H LTR MaLR 206 549 0 21 36 0 0 chr3 1873031 1873059 -216164099 + AT_rich Low_complexity Low_complexity 1 28 0 517 266 50 50 chr3 1873115 1873176 -216163982 + MIR SINE MIR 41 101 -161 1441 217 81 36 chr3 1873176 1873619 -216163539 - MLT1C LTR MaLR 0 467 5 517 266 50 50 chr3 1873619 1873779 -216163379 + MIR SINE MIR 100 262 0 405 313 22 15 chr3 1874210 1874344 -216162814 + MIR SINE MIR 20 154 -108 2443 154 0 5 chr3 1874377 1874799 -216162359 + L1MB3 LINE L1 5757 6176 -7 25 0 0 0 chr3 1874799 1874824 -216162334 + AT_rich Low_complexity Low_complexity 1 25 0 494 299 41 7 chr3 1875052 1875199 -216161959 + MIR3 SINE MIR 14 165 -43 603 112 45 15 chr3 1875464 1875598 -216161560 + L1MB2 LINE L1 6034 6171 0 2109 145 0 0 chr3 1875898 1876208 -216160950 + AluJb SINE Alu 1 310 -2 531 346 121 32 chr3 1876500 1876847 -216160311 - L2 LINE L2 0 3272 2895 2345 100 0 3 chr3 1877119 1877429 -216159729 + AluSx SINE Alu 1 309 -3 2387 148 54 6 chr3 1878719 1879239 -216157919 - L1MC1 LINE L1 -18 6315 5727 291 346 60 39 chr3 1879315 1879497 -216157661 - L3 LINE CR1 -32 1545 1360 1983 87 52 16 chr3 1879585 1879791 -216157367 - L1PA12 LINE L1 -2 6166 5944 2974 119 2 5 chr3 1879791 1880226 -216156932 - MER57B LTR ERV1 0 434 1 1983 87 52 16 chr3 1880226 1880329 -216156829 - L1PA12 LINE L1 -224 5944 5846 384 331 190 20 chr3 1880494 1880884 -216156274 - L3 LINE CR1 -346 1231 776 569 300 95 71 chr3 1880975 1881471 -216155687 - L2 LINE L2 -1 3312 2805 24 32 0 0 chr3 1881863 1881894 -216155264 + AT_rich Low_complexity Low_complexity 1 31 0 220 250 77 0 chr3 1882184 1882236 -216154922 - L2 LINE L2 0 3272 3217 990 211 5 0 chr3 1882242 1882436 -216154722 + MER63A DNA MER1_type 5 199 -11 412 328 50 76 chr3 1882451 1883041 -216154117 - L2 LINE L2 -51 3221 2661 529 90 13 0 chr3 1883170 1883248 -216153910 - MADE1 DNA Mariner -1 79 1 706 207 19 58 chr3 1883509 1883717 -216153441 + MER3 DNA MER1_type 1 200 -9 229 322 0 0 chr3 1884527 1884586 -216152572 - L2 LINE L2 -2 3311 3253 2149 117 0 0 chr3 1885245 1885535 -216151623 - AluSc SINE Alu -12 297 8 321 324 94 18 chr3 1885755 1885925 -216151233 - MIR SINE MIR -65 197 15 189 250 54 0 chr3 1886656 1886712 -216150446 - MIR SINE MIR -79 183 125 339 308 0 34 chr3 1888462 1888579 -216148579 - MIR3 SINE MIR -90 118 6 844 272 66 11 chr3 1888690 1888977 -216148181 + MER102b DNA MER1_type 21 323 -18 2154 178 10 0 chr3 1889156 1889550 -216147608 - MER57A LTR ERV1 0 403 6 424 91 0 26 chr3 1889746 1889823 -216147335 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 190 279 209 0 chr3 1889877 1889963 -216147195 - L2 LINE L2 -1 3312 3209 550 306 52 35 chr3 1890207 1890439 -216146719 - MIR SINE MIR -10 252 17 303 28 0 0 chr3 1890512 1890548 -216146610 + (CA)n Simple_repeat Simple_repeat 2 37 0 1152 86 0 0 chr3 1891051 1891203 -216145955 + AluY SINE Alu 160 311 0 479 304 104 11 chr3 1892077 1892337 -216144821 - L2 LINE L2 0 3313 3030 556 291 57 40 chr3 1892585 1892812 -216144346 + MIR SINE MIR 20 250 -12 22 0 0 0 chr3 1893224 1893246 -216143912 + AT_rich Low_complexity Low_complexity 1 22 0 252 266 0 0 chr3 1894200 1894264 -216142894 - MER117 DNA MER1_type -119 78 15 397 302 78 0 chr3 1896307 1896504 -216140654 - MIR SINE MIR 0 262 50 193 294 206 10 chr3 1896945 1897047 -216140111 - MIR SINE MIR -138 124 3 366 367 6 28 chr3 1897383 1897563 -216139595 - MIR3 SINE MIR -10 198 23 275 360 74 46 chr3 1897797 1897972 -216139186 + L3 LINE CR1 214 393 -1184 815 346 99 9 chr3 1898211 1898460 -216138698 + L3 LINE CR1 400 625 -952 210 37 0 0 chr3 1898460 1898487 -216138671 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 815 346 99 9 chr3 1898487 1898691 -216138467 + L3 LINE CR1 625 894 -683 1053 179 10 0 chr3 1899046 1899241 -216137917 - MER58 DNA MER1_type -2187 233 37 198 0 0 0 chr3 1899273 1899295 -216137863 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 331 44 0 0 chr3 1899725 1899790 -216137368 + AluY SINE Alu 237 301 0 1666 210 57 7 chr3 1900661 1901099 -216136059 - MLT1C LTR MaLR 0 467 8 1716 71 5 0 chr3 1901159 1901369 -216135789 + AluY SINE Alu 86 296 -15 11364 119 19 38 chr3 1901393 1901536 -216135622 + Tigger1 DNA MER2_type 1 145 -2273 1090 113 60 0 chr3 1901536 1901704 -216135454 - L1PB3 LINE L1 -1 6153 5976 11364 119 19 38 chr3 1901704 1902298 -216134860 + Tigger1 DNA MER2_type 145 749 -1669 2136 115 30 7 chr3 1902298 1902569 -216134589 + AluSq SINE Alu 1 281 -32 960 122 23 0 chr3 1902569 1902741 -216134417 + GA-rich Low_complexity Low_complexity 3 178 0 2136 115 30 7 chr3 1902741 1902773 -216134385 + AluSq SINE Alu 281 311 -2 11364 119 19 38 chr3 1902773 1904006 -216133152 + Tigger1 DNA MER2_type 749 1934 -484 2186 152 20 93 chr3 1904006 1904499 -216132659 - LTR32 LTR ERVL 0 471 15 2955 140 10 6 chr3 1904499 1904985 -216132173 + Tigger1 DNA MER2_type 1930 2417 -1 434 274 42 53 chr3 1905085 1905275 -216131883 - MIR SINE MIR -36 226 39 315 452 25 0 chr3 1905468 1905625 -216131533 - L2 LINE L2 -12 3260 3100 * 621 292 31 5 chr3 1905623 1905815 -216131343 - MIR SINE MIR -1 261 65 354 304 9 9 chr3 1906018 1906133 -216131025 + MIR SINE MIR 137 251 -11 245 289 22 44 chr3 1906429 1906519 -216130639 + L3 LINE CR1 1488 1575 -2 475 305 72 6 chr3 1907800 1907967 -216129191 + MIR SINE MIR 37 214 -48 783 73 47 80 chr3 1908567 1908582 -216128576 + L1MA5A LINE L1 6153 6167 -130 1827 153 40 35 chr3 1908582 1908955 -216128203 + THE1C LTR MaLR 1 375 0 783 73 47 80 chr3 1908955 1909063 -216128095 + L1MA5A LINE L1 6167 6273 -24 455 105 53 0 chr3 1909063 1909089 -216128069 + MADE1 DNA Mariner 1 24 -56 2312 84 19 10 chr3 1909089 1909397 -216127761 - AluY SINE Alu 0 311 1 455 105 53 0 chr3 1909397 1909446 -216127712 + MADE1 DNA Mariner 24 80 0 783 73 47 80 chr3 1909446 1909471 -216127687 + L1MA5A LINE L1 6273 6297 0 1161 195 20 28 chr3 1910185 1910516 -216126642 - MLT2B3 LTR ERVL 0 554 231 1401 159 39 0 chr3 1910528 1910786 -216126372 - MLT2A2 LTR ERVL -185 268 1 698 296 102 19 chr3 1910880 1911194 -216125964 + MER102b DNA MER1_type 2 341 0 210 288 82 0 chr3 1911296 1911369 -216125789 + L2 LINE L2 3235 3313 0 238 281 67 11 chr3 1911377 1911466 -216125692 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 1912694 1912885 -216124273 - MIR SINE MIR -43 219 18 304 272 25 0 chr3 1912995 1913076 -216124082 - MER81 DNA DNA -5 109 27 260 184 0 20 chr3 1913099 1913148 -216124010 - MER81 DNA DNA -66 48 1 2377 124 5 22 chr3 1913327 1913697 -216123461 + THE1B LTR MaLR 1 364 0 294 320 56 8 chr3 1913951 1914076 -216123082 - MIR SINE MIR -29 233 103 355 271 75 0 chr3 1915004 1915137 -216122021 + LTR67 LTR ERVL 403 545 -12 2246 103 3 10 chr3 1915183 1915495 -216121663 - AluSg SINE Alu 0 310 1 1632 167 39 33 chr3 1915581 1915917 -216121241 - MER7A DNA MER2_type -9 337 2 21 0 0 0 chr3 1916073 1916094 -216121064 + AT_rich Low_complexity Low_complexity 1 21 0 205 353 35 12 chr3 1916266 1916351 -216120807 - MIR SINE MIR 0 262 176 496 286 31 26 chr3 1916739 1916931 -216120227 - MIR SINE MIR 0 262 70 1131 179 37 34 chr3 1917145 1917413 -216119745 - L1MB8 LINE L1 -75 6103 5835 186 191 0 0 chr3 1917702 1917744 -216119414 + (TG)n Simple_repeat Simple_repeat 2 43 0 217 89 44 0 chr3 1920687 1920732 -216116426 + (TTA)n Simple_repeat Simple_repeat 2 48 0 186 133 0 0 chr3 1921045 1921075 -216116083 + (T)n Simple_repeat Simple_repeat 1 30 0 286 339 106 21 chr3 1925012 1925201 -216111957 - MIR SINE MIR -21 241 37 419 234 81 16 chr3 1925516 1925640 -216111518 - MIR SINE MIR -18 244 113 584 292 80 56 chr3 1926383 1926722 -216110436 - L1ME4a LINE L1 0 6121 5775 252 268 0 0 chr3 1929757 1929813 -216107345 + L2 LINE L2 3176 3231 -41 2203 137 44 34 chr3 1930015 1930238 -216106920 - MLT1B LTR MaLR 0 390 160 2427 93 3 0 chr3 1930238 1930548 -216106610 - AluSq SINE Alu -2 311 1 2203 137 44 34 chr3 1930548 1930710 -216106448 - MLT1B LTR MaLR -230 160 1 514 343 0 0 chr3 1930871 1931014 -216106144 - MIR3 SINE MIR -23 185 43 213 321 0 0 chr3 1931726 1931782 -216105376 - L2 LINE L2 -5 3308 3253 843 233 110 8 chr3 1932189 1932425 -216104733 - MIR SINE MIR 0 262 3 242 289 47 39 chr3 1932426 1932554 -216104604 - L2 LINE L2 -494 2820 2692 1793 166 7 7 chr3 1933127 1933423 -216103735 + AluJo SINE Alu 5 300 -12 415 279 144 19 chr3 1933732 1933940 -216103218 - L2 LINE L2 -12 3301 3068 324 278 107 47 chr3 1934711 1934880 -216102278 - MIR3 SINE MIR -7 201 23 4720 184 57 16 chr3 1935076 1936162 -216100996 - L1MC4 LINE L1 -5 8037 6907 1000 288 88 22 chr3 1936213 1936457 -216100701 - LTR16C LTR ERVL -22 469 192 2182 165 93 27 chr3 1936457 1936931 -216100227 + MLT1D LTR MaLR 1 505 0 1000 288 88 22 chr3 1936931 1937051 -216100107 - LTR16C LTR ERVL -299 192 81 2690 80 11 16 chr3 1937993 1938369 -216098789 - THE1C LTR MaLR 0 375 2 180 324 25 88 chr3 1938434 1938718 -216098440 + L2 LINE L2 2711 2976 -338 244 295 16 0 chr3 1938880 1938941 -216098217 + L2 LINE L2 3206 3267 -5 448 303 68 19 chr3 1939024 1939110 -216098048 + MIR3 SINE MIR 33 113 -95 20476 58 1 18 chr3 1939110 1942567 -216094591 + L1PA5 LINE L1 2698 6145 -9 448 303 68 19 chr3 1942567 1942642 -216094516 + MIR3 SINE MIR 113 202 -6 562 266 128 21 chr3 1943185 1943373 -216093785 + MIR SINE MIR 18 225 -37 240 381 49 69 chr3 1943387 1943836 -216093322 - L2 LINE L2 -8 3264 2825 189 133 0 0 chr3 1943866 1943896 -216093262 - L2 LINE L2 -4 3309 3280 234 293 73 0 chr3 1943903 1943985 -216093173 - MIR SINE MIR -95 167 80 3042 144 26 0 chr3 1944005 1944505 -216092653 - L1PA16 LINE L1 -2 6164 5652 1339 107 9 0 chr3 1944505 1944721 -216092437 + L1P4 LINE L1 5377 5594 -572 293 328 49 16 chr3 1945049 1945171 -216091987 - MIR SINE MIR -105 157 32 6410 256 85 48 chr3 1945392 1947811 -216089347 + L2 LINE L2 450 2958 -356 858 176 4 106 chr3 1947812 1948039 -216089119 + MER3 DNA MER1_type 6 209 0 979 262 19 52 chr3 1948048 1948372 -216088786 + L2 LINE L2 2966 3278 -35 262 274 16 0 chr3 1948565 1948627 -216088531 + L2 LINE L2 3136 3198 -74 979 157 0 0 chr3 1950394 1950547 -216086611 + FRAM SINE Alu 21 173 -3 377 224 115 51 chr3 1951090 1951246 -216085912 + MIR3 SINE MIR 40 205 -3 762 289 62 55 chr3 1951741 1952194 -216084964 - MLT1K LTR MaLR -64 524 69 834 286 44 8 chr3 1952368 1952620 -216084538 + MIR SINE MIR 2 262 0 289 341 12 0 chr3 1952623 1952708 -216084450 - MIR SINE MIR -93 115 30 630 297 39 0 chr3 1953874 1954056 -216083102 - MIR SINE MIR -48 214 26 2645 171 92 14 chr3 1954119 1954629 -216082529 - MER44D DNA MER2_type 0 605 1 270 383 87 0 chr3 1954703 1954886 -216082272 - MIR SINE MIR 0 262 64 1197 252 20 17 chr3 1954896 1955198 -216081960 + LTR16C LTR ERVL 189 491 0 22 0 0 0 chr3 1956068 1956090 -216081068 + AT_rich Low_complexity Low_complexity 1 22 0 2186 107 3 7 chr3 1956179 1956469 -216080689 + AluSc SINE Alu 1 289 -20 189 0 0 0 chr3 1956871 1956892 -216080266 + (T)n Simple_repeat Simple_repeat 1 21 0 543 285 21 57 chr3 1958016 1958051 -216079107 + MIR3 SINE MIR 19 54 -154 1221 186 91 96 chr3 1958051 1958449 -216078709 + MSTD LTR MaLR 1 396 0 543 285 21 57 chr3 1958449 1958606 -216078552 + MIR3 SINE MIR 54 204 -4 43 47 0 0 chr3 1958621 1958685 -216078473 + AT_rich Low_complexity Low_complexity 1 64 0 25973 107 10 49 chr3 1959283 1965739 -216071419 - L1PA7 LINE L1 0 6154 12 24 32 0 0 chr3 1966314 1966345 -216070813 + AT_rich Low_complexity Low_complexity 1 31 0 564 295 84 40 chr3 1966447 1966698 -216070460 + MIR SINE MIR 1 262 0 372 273 23 34 chr3 1966823 1966999 -216070159 - MER104 DNA Tc2 0 180 7 269 272 65 33 chr3 1967248 1967340 -216069818 - L3 LINE CR1 -7 1570 1476 402 275 261 24 chr3 1967931 1968142 -216069016 - MIR SINE MIR 0 262 2 29 0 0 0 chr3 1968608 1968637 -216068521 + AT_rich Low_complexity Low_complexity 1 29 0 11466 35 19 3 chr3 1968637 1970819 -216066339 - L1PA3 LINE L1 -3 6152 3948 15301 34 1 0 chr3 1970819 1972785 -216064373 + L1PA3 LINE L1 1965 3932 -2214 525 111 0 22 chr3 1972901 1972991 -216064167 + MER53 DNA DNA 102 189 0 1819 196 123 5 chr3 1972991 1973389 -216063769 + MLT1F1 LTR MaLR 123 567 0 2059 111 26 65 chr3 1973529 1973916 -216063242 + THE1C LTR MaLR 1 372 -3 21 71 0 0 chr3 1973999 1974041 -216063117 + AT_rich Low_complexity Low_complexity 1 42 0 232 298 57 79 chr3 1974072 1974242 -216062916 - MIR SINE MIR -56 206 32 2192 123 0 3 chr3 1974384 1974685 -216062473 + AluSg SINE Alu 1 300 -10 2191 148 0 0 chr3 1977166 1977476 -216059682 - AluSx SINE Alu -2 310 1 317 261 114 34 chr3 1978133 1978307 -216058851 - MIR3 SINE MIR -6 202 13 * 541 327 128 0 chr3 1978255 1978466 -216058692 + MIR SINE MIR 23 260 -2 333 238 60 24 chr3 1979116 1979200 -216057958 - MIR SINE MIR -157 105 19 321 26 0 0 chr3 1979379 1979417 -216057741 + (CA)n Simple_repeat Simple_repeat 1 38 0 2386 81 35 3 chr3 1980111 1980455 -216056703 + THE1A LTR MaLR 1 355 0 705 316 50 11 chr3 1981322 1981683 -216055475 + LTR16A LTR ERVL 1 375 -75 658 291 100 9 chr3 1981894 1982114 -216055044 + MIR SINE MIR 23 262 0 1226 83 52 5 chr3 1982265 1982458 -216054700 + MLT2A1 LTR ERVL 3 204 -240 5093 83 0 0 chr3 1982458 1983153 -216054005 - L1PA4 LINE L1 -5450 696 2 * 36236 38 4 4 chr3 1983146 1988619 -216048539 + L1PA4 LINE L1 685 6152 -3 1490 97 26 4 chr3 1988656 1988882 -216048276 + MLT2A1 LTR ERVL 214 444 0 428 257 60 49 chr3 1989420 1989632 -216047526 + MLT1L LTR MaLR 366 605 -8 302 302 7 64 chr3 1989732 1989858 -216047300 - MIR3 SINE MIR -41 167 45 288 185 37 0 chr3 1989861 1989915 -216047243 - L2 LINE L2 0 3272 3217 269 313 86 31 chr3 1990773 1990901 -216046257 + MER5A DNA MER1_type 55 189 0 * 279 215 51 51 chr3 1990901 1990955 -216046203 - MIR3 SINE MIR -47 161 108 189 345 18 0 chr3 1991149 1991204 -216045954 - L2 LINE L2 -17 3296 3241 606 297 109 17 chr3 1993969 1994208 -216042950 + MIR SINE MIR 2 262 0 195 328 50 34 chr3 1994291 1994410 -216042748 - MIR SINE MIR -95 167 47 189 203 68 0 chr3 1995876 1995935 -216041223 + L2 LINE L2 1644 1706 -1608 588 279 66 44 chr3 1996049 1996368 -216040790 + MLT1I LTR MaLR 63 388 -21 1393 296 84 32 chr3 1996410 1997028 -216040130 + L2 LINE L2 1801 2450 -864 1267 188 26 0 chr3 1997029 1997258 -216039900 + MLT1C LTR MaLR 233 467 0 378 266 64 0 chr3 1999818 1999912 -216037246 - MIR SINE MIR -116 146 47 479 283 20 26 chr3 2000211 2000363 -216036795 - MIR3 SINE MIR -24 184 34 484 271 33 20 chr3 2001344 2001495 -216035663 - MIR3 SINE MIR -16 192 40 530 343 41 0 chr3 2001501 2001720 -216035438 - LTR16C LTR ERVL 0 491 264 2451 173 70 10 chr3 2002063 2002549 -216034609 - MLT2B2 LTR ERVL 0 515 1 2587 169 25 17 chr3 2002549 2003215 -216033943 - ERVL LTR ERVL 0 5654 5007 553 163 0 0 chr3 2003215 2003307 -216033851 - MLT2B1 LTR ERVL -428 92 1 539 287 80 49 chr3 2003440 2003764 -216033394 - MLT1K LTR MaLR 0 588 255 680 258 62 0 chr3 2003820 2003998 -216033160 - MER5A DNA MER1_type 0 189 1 421 141 16 132 chr3 2004022 2004143 -216033015 - MLT1K LTR MaLR -448 107 1 399 317 36 22 chr3 2004191 2004547 -216032611 + L1MEc LINE L1 1294 1654 -4742 2696 279 38 27 chr3 2004557 2005446 -216031712 + L1MEc LINE L1 3032 3946 -2269 1673 188 0 24 chr3 2005446 2005734 -216031424 + AluJo SINE Alu 11 291 -21 2696 279 38 27 chr3 2005734 2006340 -216030818 + L1MEc LINE L1 3946 4544 -1671 4913 227 42 16 chr3 2006342 2008189 -216028969 + L1MCa LINE L1 575 2662 -3945 1268 235 40 0 chr3 2008200 2008595 -216028563 + L1MCa LINE L1 3308 3718 -2708 1665 56 8 0 chr3 2008601 2008835 -216028323 + L1P LINE L1 4872 5107 -1039 213 136 45 0 chr3 2008835 2008901 -216028257 + (TA)n Simple_repeat Simple_repeat 2 70 0 6809 62 5 0 chr3 2008903 2010394 -216026764 - L1PA6 LINE L1 -13 6141 4643 5344 39 5 3 chr3 2010394 2011040 -216026118 - L1PA5 LINE L1 -2 6152 5506 28060 97 7 8 chr3 2011042 2015703 -216021455 - L1PA6 LINE L1 -1494 4652 1 320 248 0 0 chr3 2015742 2015830 -216021328 + L1PB4 LINE L1 6072 6149 -7 14183 159 29 8 chr3 2015845 2017903 -216019255 - L1MA1 LINE L1 0 7721 5557 1838 183 0 3 chr3 2017903 2018204 -216018954 - AluSx SINE Alu -12 300 1 14183 159 29 8 chr3 2018204 2019950 -216017208 - L1MA1 LINE L1 -2164 5557 3849 1859 209 57 90 chr3 2019951 2020516 -216016642 + MLT2B3 LTR ERVL 1 546 -8 10552 130 24 7 chr3 2020520 2022456 -216014702 - L1MA1 LINE L1 -3713 3852 1881 1761 163 14 20 chr3 2022457 2022801 -216014357 + L1MC1 LINE L1 5272 5613 -720 2296 169 11 13 chr3 2022804 2023253 -216013905 + L1MA7 LINE L1 5842 6289 -2 3822 153 28 36 chr3 2023270 2023693 -216013465 + L1MC1 LINE L1 5595 6011 -322 2046 145 0 7 chr3 2023693 2023997 -216013161 - AluSx SINE Alu -10 302 1 3822 153 28 36 chr3 2023997 2024318 -216012840 + L1MC1 LINE L1 6011 6333 0 634 241 42 87 chr3 2024323 2024725 -216012433 + L1ME3A LINE L1 4475 4858 -1288 244 300 85 0 chr3 2024732 2024862 -216012296 + L1ME3A LINE L1 5006 5146 -1000 4443 133 27 13 chr3 2024863 2025612 -216011546 + Tigger2 DNA MER2_type 1 759 -1959 1117 167 73 29 chr3 2025667 2025852 -216011306 + Tigger2 DNA MER2_type 2453 2653 -55 2262 116 0 0 chr3 2025852 2026154 -216011004 - AluSq SINE Alu -11 302 1 1117 167 73 29 chr3 2026154 2026213 -216010945 + Tigger2 DNA MER2_type 2653 2708 0 696 257 32 24 chr3 2026215 2026532 -216010626 + L1ME3A LINE L1 5148 5468 -696 313 236 67 0 chr3 2026540 2026629 -216010529 - L1MA9 LINE L1 -38 6274 6180 2074 123 0 10 chr3 2026629 2026921 -216010237 + AluSx SINE Alu 1 289 -23 1044 123 21 48 chr3 2026936 2027143 -216010015 + AluSq SINE Alu 132 313 0 2722 183 57 37 chr3 2027170 2027786 -216009372 - L1MA9 LINE L1 -181 6131 5504 1870 242 83 44 chr3 2027774 2028435 -216008723 + L1ME3A LINE L1 5448 6134 -36 * 23 54 0 0 chr3 2029024 2029061 -216008097 + AT_rich Low_complexity Low_complexity 1 37 0 188 208 75 0 chr3 2029096 2029149 -216008009 - MIR SINE MIR -107 155 99 328 277 149 0 chr3 2029151 2029245 -216007913 + MIR3 SINE MIR 89 196 -12 236 216 91 80 chr3 2030200 2030288 -216006870 - MIR SINE MIR -68 140 52 234 219 0 0 chr3 2030462 2030526 -216006632 + (TA)n Simple_repeat Simple_repeat 2 65 0 931 292 67 49 chr3 2031548 2032058 -216005100 - MLT1K LTR MaLR -60 528 10 26 74 0 0 chr3 2032335 2032389 -216004769 + AT_rich Low_complexity Low_complexity 1 54 0 30 0 0 0 chr3 2032717 2032747 -216004411 + AT_rich Low_complexity Low_complexity 1 30 0 2286 107 0 10 chr3 2032933 2033242 -216003916 - AluSx SINE Alu -6 306 1 194 283 110 55 chr3 2034842 2034987 -216002171 + MIR3 SINE MIR 44 196 -12 332 323 26 42 chr3 2035140 2035332 -216001826 + MIR SINE MIR 1 189 -73 2235 120 17 6 chr3 2035551 2035908 -216001250 + MER46B DNA MER2_type 1 236 0 207 306 10 31 chr3 2036632 2036730 -216000428 - MIR SINE MIR 0 262 167 42718 32 21 2 chr3 2036754 2042788 -215994370 + L1HS LINE L1 3 6155 0 266 268 85 12 chr3 2042793 2042875 -215994283 - MIR SINE MIR -133 129 42 936 300 129 12 chr3 2042945 2043435 -215993723 + MLT1H1 LTR MaLR 1 547 -8 258 200 0 33 chr3 2043663 2043723 -215993435 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 545 312 41 45 chr3 2044543 2044812 -215992346 + MLT1K LTR MaLR 317 584 -4 2399 43 13 0 chr3 2044892 2045219 -215991939 + L1PA3 LINE L1 5849 6179 0 2278 89 0 40 chr3 2045362 2045687 -215991471 - AluSx SINE Alu 0 312 1 342 0 0 0 chr3 2046610 2046648 -215990510 + (A)n Simple_repeat Simple_repeat 1 38 0 1171 266 110 39 chr3 2046967 2047629 -215989529 - L2 LINE L2 -6 3307 2608 1085 214 57 21 chr3 2047634 2047965 -215989193 - L1MEc LINE L1 -4330 2066 1724 7022 26 0 0 chr3 2047968 2048780 -215988378 - L1PA3 LINE L1 0 6155 5344 3374 300 55 24 chr3 2048782 2050377 -215986781 - L1MEc LINE L1 -4675 1721 77 324 227 57 102 chr3 2050380 2050556 -215986602 - MIR3 SINE MIR -22 186 19 405 157 0 14 chr3 2050581 2050651 -215986507 - MLT1C LTR MaLR -1 466 398 1910 150 0 0 chr3 2050657 2050931 -215986227 + AluSx SINE Alu 1 274 -38 807 66 0 0 chr3 2050931 2051037 -215986121 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 900 151 0 0 chr3 2051048 2051174 -215985984 + AluSg/x SINE Alu 146 271 -39 234 105 0 0 chr3 2051180 2051218 -215985940 + (GA)n Simple_repeat Simple_repeat 1 38 0 1413 228 27 49 chr3 2051222 2051630 -215985528 - MLT1C LTR MaLR -62 405 7 346 268 167 24 chr3 2053002 2053170 -215983988 - MIR3 SINE MIR -7 201 10 1186 295 164 15 chr3 2053193 2054033 -215983125 + L2 LINE L2 2116 3082 -231 2238 110 7 0 chr3 2054231 2054531 -215982627 - AluSq SINE Alu -11 302 1 1046 173 0 0 chr3 2054564 2054726 -215982432 - FAM SINE Alu -12 163 2 337 322 77 11 chr3 2058023 2058206 -215978952 + L2 LINE L2 3118 3312 -1 473 198 16 24 chr3 2061294 2061420 -215975738 + L1ME4a LINE L1 5993 6117 -4 21 0 0 0 chr3 2061966 2061987 -215975171 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 2062243 2062264 -215974894 + AT_rich Low_complexity Low_complexity 1 21 0 355 370 79 46 chr3 2062929 2063232 -215973926 - L2 LINE L2 -18 3254 2942 225 273 116 88 chr3 2063391 2063607 -215973551 + L2 LINE L2 2925 3146 -126 1084 215 66 78 chr3 2064614 2064635 -215972523 - MLT1B LTR MaLR 0 390 370 1942 185 25 3 chr3 2064635 2064992 -215972166 - MLT1A1 LTR MaLR 0 365 1 1084 215 66 78 chr3 2064992 2065365 -215971793 - MLT1B LTR MaLR -20 370 1 623 87 19 0 chr3 2065373 2065476 -215971682 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 554 149 0 9 chr3 2065476 2065583 -215971575 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 208 260 0 0 chr3 2065752 2065802 -215971356 - L2 LINE L2 -8 3305 3256 465 269 51 32 chr3 2065883 2066039 -215971119 - MER5B DNA MER1_type -1 177 19 1744 238 97 33 chr3 2066999 2067638 -215969520 + MER20B DNA MER1_type 96 775 -8 214 208 0 38 chr3 2067949 2068002 -215969156 - MIR SINE MIR -51 211 161 10018 86 13 1 chr3 2068024 2070190 -215966968 - L1PA7 LINE L1 -2 6152 3969 8740 98 30 9 chr3 2070190 2071578 -215965580 + L1PA7 LINE L1 2546 3963 -2183 212 348 102 0 chr3 2071582 2071700 -215965458 - MIR SINE MIR -108 154 25 499 257 22 15 chr3 2072376 2072512 -215964646 + MER117 DNA MER1_type 8 144 -53 275 297 0 0 chr3 2072597 2072661 -215964497 - MIR SINE MIR -64 144 81 2805 19 0 0 chr3 2072662 2072975 -215964183 + AluYb8 SINE Alu 1 313 -5 3808 90 8 4 chr3 2073006 2073538 -215963620 + L1PA14 LINE L1 5627 6160 -1 243 290 40 10 chr3 2073627 2073727 -215963431 - MIR SINE MIR -23 239 137 291 65 87 0 chr3 2074992 2075038 -215962120 + MADE1 DNA Mariner 4 53 -27 372 295 132 44 chr3 2075111 2075252 -215961906 - MIR SINE MIR -1 261 91 2387 106 3 0 chr3 2075252 2075563 -215961595 + AluSp SINE Alu 1 312 -1 372 295 132 44 chr3 2075563 2075648 -215961510 - MIR SINE MIR -171 91 15 192 77 0 0 chr3 2076012 2076038 -215961120 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 225 302 58 12 chr3 2076653 2076739 -215960419 + MIR SINE MIR 25 114 -148 364 325 98 0 chr3 2076999 2077162 -215959996 - MIR SINE MIR -1 261 83 415 126 11 23 chr3 2077589 2077676 -215959482 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 1038 265 63 66 chr3 2077850 2078292 -215958866 + L2 LINE L2 2873 3313 0 215 224 17 17 chr3 2078297 2078355 -215958803 - MIR SINE MIR -123 139 82 283 306 231 27 chr3 2078381 2078675 -215958483 + L2 LINE L2 2910 3263 -50 217 368 0 0 chr3 2078700 2078776 -215958382 + MIR SINE MIR 185 260 -2 934 158 20 0 chr3 2079705 2079851 -215957307 - FAM SINE Alu -14 171 23 294 264 0 11 chr3 2080736 2080827 -215956331 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 486 0 0 0 chr3 2081145 2081199 -215955959 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 35 0 0 chr3 2081515 2081544 -215955614 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1270 166 107 112 chr3 2081558 2081950 -215955208 + MLT1B LTR MaLR 1 390 0 209 290 108 21 chr3 2082554 2082647 -215954511 + L3 LINE CR1 1383 1483 -94 * 234 318 91 45 chr3 2082640 2082772 -215954386 - L2 LINE L2 0 3313 3176 2219 108 0 3 chr3 2083158 2083454 -215953704 + AluSc SINE Alu 2 296 -13 322 304 77 0 chr3 2084221 2084389 -215952769 + L1ME4a LINE L1 5636 5816 -305 414 275 133 38 chr3 2084476 2084716 -215952442 + L1ME4a LINE L1 5856 6118 -3 287 309 11 11 chr3 2084891 2084985 -215952173 + MIR3 SINE MIR 109 202 -6 315 281 22 50 chr3 2085159 2085298 -215951860 - MIR3 SINE MIR -20 188 54 5166 146 9 25 chr3 2085571 2086673 -215950485 + L1PA16 LINE L1 4686 5762 -404 2216 129 0 37 chr3 2086673 2087022 -215950136 - MER1B DNA MER1_type 0 337 2 5166 146 9 25 chr3 2087022 2087376 -215949782 + L1PA16 LINE L1 5762 6120 -46 7133 128 52 2 chr3 2087389 2088608 -215948550 - HSMAR2 DNA Mariner -22 1280 2 420 307 14 43 chr3 2088759 2088899 -215948259 + MIR3 SINE MIR 4 139 -69 331 328 0 73 chr3 2089035 2089212 -215947946 - L2 LINE L2 -227 3045 2882 215 200 122 78 chr3 2090148 2090238 -215946920 + L3 LINE CR1 295 388 -1189 3494 42 0 5 chr3 2090727 2091156 -215946002 - L1PA5 LINE L1 0 6154 5728 3621 35 29 3 chr3 2091158 2091794 -215945364 + L1PA5 LINE L1 5087 5735 -419 1556 201 223 2 chr3 2091845 2092257 -215944901 - MLT1F LTR MaLR 0 542 40 193 194 0 0 chr3 2092297 2092333 -215944825 - L2 LINE L2 -9 3304 3269 274 336 141 32 chr3 2092789 2093336 -215943822 - L2 LINE L2 -7 3306 2703 2162 113 0 7 chr3 2093889 2094191 -215942967 + AluSx SINE Alu 1 300 -12 631 293 96 29 chr3 2094629 2094974 -215942184 - LTR16C LTR ERVL -34 457 90 22 35 0 0 chr3 2095115 2095144 -215942014 + AT_rich Low_complexity Low_complexity 1 29 0 585 259 113 29 chr3 2095413 2095652 -215941506 + MIR SINE MIR 1 259 -3 444 314 182 0 chr3 2095859 2096079 -215941079 + MIR SINE MIR 3 262 0 364 222 99 0 chr3 2096086 2096167 -215940991 - L2 LINE L2 -4 3268 3180 204 216 0 0 chr3 2096301 2096352 -215940806 + GA-rich Low_complexity Low_complexity 4 54 0 387 333 80 12 chr3 2096903 2097065 -215940093 - MIR SINE MIR -56 206 34 734 165 0 24 chr3 2097223 2097341 -215939817 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 2097341 2097382 -215939776 + (CA)n Simple_repeat Simple_repeat 2 42 0 829 222 46 62 chr3 2098242 2098323 -215938835 + MER33 DNA MER1_type 1 82 -2503 1865 189 38 53 chr3 2098323 2098773 -215938385 + LTR47B LTR ERVL 1 443 0 829 222 46 62 chr3 2098773 2098997 -215938161 + MER33 DNA MER1_type 82 301 -23 229 330 43 0 chr3 2099950 2100065 -215937093 + MIR3 SINE MIR 37 156 -52 608 274 18 50 chr3 2100619 2100838 -215936320 - MIR SINE MIR -20 242 31 232 388 106 0 chr3 2101878 2102066 -215935092 - MIR SINE MIR -2 260 53 229 314 108 29 chr3 2102120 2102222 -215934936 + MIR SINE MIR 34 143 -65 326 262 172 21 chr3 2102263 2102408 -215934750 + MIR SINE MIR 36 202 -60 394 56 0 0 chr3 2102413 2102467 -215934691 - MLT2A1 LTR ERVL 0 444 391 321 310 0 0 chr3 2102468 2102555 -215934603 - L1MC4 LINE L1 -1342 6700 6614 318 292 11 0 chr3 2102527 2102616 -215934542 + L1MC4 LINE L1 6614 6703 -1339 * 208 151 57 0 chr3 2102617 2102670 -215934488 + (TA)n Simple_repeat Simple_repeat 2 57 0 2083 145 5 30 chr3 2102683 2103056 -215934102 - THE1B LTR MaLR 0 364 1 233 238 71 36 chr3 2103340 2103424 -215933734 + MIR SINE MIR 96 182 -80 532 276 13 26 chr3 2103824 2103980 -215933178 + MIR SINE MIR 2 155 -107 2048 234 90 22 chr3 2104013 2104590 -215932568 + MLT1E2 LTR MaLR 1 616 -10 286 235 82 0 chr3 2104819 2104904 -215932254 - MIR SINE MIR -65 197 106 234 307 183 7 chr3 2105492 2105645 -215931513 + MER5A DNA MER1_type 9 188 -1 853 281 139 22 chr3 2106200 2106652 -215930506 - MLT1D LTR MaLR 0 505 1 231 233 97 29 chr3 2106763 2106866 -215930292 + MIR SINE MIR 139 248 -14 216 0 0 0 chr3 2107879 2107903 -215929255 + (A)n Simple_repeat Simple_repeat 1 24 0 5627 203 44 8 chr3 2108519 2109826 -215927332 - L1PA12 LINE L1 -4827 2754 1688 3810 0 0 0 chr3 2110251 2110693 -215926465 - L1HS LINE L1 0 6155 5714 1189 106 4 65 chr3 2110739 2110768 -215926390 + L1MA9 LINE L1 6082 6111 -201 1590 194 31 17 chr3 2110768 2111057 -215926101 + AluJo SINE Alu 1 293 -19 1189 106 4 65 chr3 2111057 2111272 -215925886 + L1MA9 LINE L1 6111 6311 -1 679 291 131 43 chr3 2111467 2111842 -215925316 + L3 LINE CR1 623 1030 -547 226 333 0 0 chr3 2111897 2111954 -215925204 + L3 LINE CR1 1409 1465 -112 2232 126 3 0 chr3 2112091 2112401 -215924757 - AluSx SINE Alu -1 311 1 281 297 55 55 chr3 2113080 2113245 -215923913 + MIR SINE MIR 52 216 -46 295 284 35 71 chr3 2113280 2113311 -215923847 - MIR SINE MIR -58 204 173 2395 133 22 38 chr3 2113311 2113349 -215923809 + MER65A LTR ERV1 2 39 -406 204 97 0 0 chr3 2113349 2113380 -215923778 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2395 133 22 38 chr3 2113380 2113792 -215923366 + MER65A LTR ERV1 39 445 0 295 284 35 71 chr3 2113792 2113901 -215923257 - MIR SINE MIR -89 173 69 405 281 96 46 chr3 2114008 2114353 -215922805 + LTR33 LTR ERVL 93 454 -67 329 291 45 27 chr3 2116004 2116050 -215921108 + MIR SINE MIR 95 139 -123 1211 206 75 54 chr3 2116050 2116400 -215920758 + MLT2C1 LTR ERVL 1 361 -36 411 56 0 0 chr3 2116400 2116454 -215920704 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 1211 206 75 54 chr3 2116454 2116492 -215920666 + MLT2C1 LTR ERVL 361 397 0 329 291 45 27 chr3 2116492 2116555 -215920603 + MIR SINE MIR 139 206 -56 829 224 0 12 chr3 2116933 2117098 -215920060 + FRAM SINE Alu 1 162 -14 504 253 93 0 chr3 2117346 2117496 -215919662 + MLT1J2 LTR MaLR 18 181 -269 983 293 96 48 chr3 2117508 2118376 -215918782 + L2 LINE L2 2357 3253 -60 187 351 13 0 chr3 2118377 2118454 -215918704 + MIR3 SINE MIR 84 161 -47 616 298 46 21 chr3 2118890 2119128 -215918030 - MIR SINE MIR -16 246 3 187 352 14 14 chr3 2119177 2119248 -215917910 + L2 LINE L2 2991 3061 -211 287 319 220 5 chr3 2119320 2119511 -215917647 - MIR SINE MIR -3 259 28 223 363 124 0 chr3 2119829 2119942 -215917216 + L2 LINE L2 3183 3309 -4 742 301 153 17 chr3 2120105 2120464 -215916694 - MLT1I LTR MaLR 0 409 2 4280 164 47 6 chr3 2120499 2121287 -215915871 - LTR1B LTR ERV1 0 826 7 291 195 158 0 chr3 2121399 2121481 -215915677 + MIR SINE MIR 91 185 -77 2045 141 0 22 chr3 2121489 2121808 -215915350 + AluJb SINE Alu 1 312 0 200 239 22 0 chr3 2121855 2121901 -215915257 + L2 LINE L2 3210 3256 -16 1615 190 22 28 chr3 2123042 2123409 -215913749 - MLT1A1 LTR MaLR 0 467 1 405 141 256 0 chr3 2123756 2123834 -215913324 - Tigger1 DNA MER2_type 0 2418 2321 * 4549 135 7 0 chr3 2123832 2124559 -215912599 - Tigger1 DNA MER2_type -1659 759 28 536 287 23 6 chr3 2125813 2125987 -215911171 - MIR SINE MIR -10 252 76 242 344 10 0 chr3 2126308 2126404 -215910754 - MIR SINE MIR 0 262 166 1912 162 43 94 chr3 2126422 2126501 -215910657 - MLT1D LTR MaLR 0 505 424 1711 191 47 7 chr3 2126501 2126799 -215910359 - AluJo SINE Alu -2 310 1 1912 162 43 94 chr3 2126799 2127249 -215909909 - MLT1D LTR MaLR -81 424 3 27 29 0 0 chr3 2127388 2127422 -215909736 + AT_rich Low_complexity Low_complexity 1 34 0 1426 211 68 4 chr3 2127422 2127702 -215909456 + AluJo SINE Alu 1 298 -14 303 269 17 25 chr3 2127702 2127769 -215909389 + L1ME4a LINE L1 6001 6068 -53 2409 78 0 16 chr3 2127769 2128076 -215909082 - AluY SINE Alu -9 302 1 303 269 17 25 chr3 2128076 2128127 -215909031 + L1ME4a LINE L1 6068 6118 -3 365 321 14 29 chr3 2128531 2128671 -215908487 + MIR SINE MIR 52 189 -73 224 161 195 81 chr3 2128848 2128935 -215908223 - MIR SINE MIR -146 116 20 234 250 0 50 chr3 2128988 2129048 -215908110 - MIR SINE MIR -133 75 19 * 849 267 49 20 chr3 2129019 2129266 -215907892 - MIR SINE MIR -7 255 2 361 318 91 86 chr3 2130615 2131212 -215905946 - L2 LINE L2 -2 3270 2652 546 226 80 15 chr3 2131332 2131469 -215905689 + MIR SINE MIR 9 154 -108 1077 234 36 39 chr3 2131476 2131784 -215905374 - MER46C DNA MER2_type -20 318 12 364 177 63 0 chr3 2131795 2131874 -215905284 + MIR SINE MIR 153 236 -26 265 235 59 0 chr3 2131938 2132006 -215905152 + MIR3 SINE MIR 126 197 -11 1801 150 119 0 chr3 2132089 2132197 -215904961 - MER57A LTR ERV1 0 403 309 3348 129 2 2 chr3 2132197 2132694 -215904464 + LOR1a LTR ERV1 1 497 0 1801 150 119 0 chr3 2132694 2132945 -215904213 - MER57A LTR ERV1 -94 309 1 339 255 0 103 chr3 2133294 2133439 -215903719 + MIR SINE MIR 77 206 -56 3457 113 10 8 chr3 2133483 2133987 -215903171 - MER84 LTR ERV1 0 507 3 3184 138 123 7 chr3 2134129 2134730 -215902428 + LTR51 LTR ERV1 1 671 0 190 239 0 22 chr3 2134753 2134799 -215902359 - MIR SINE MIR -36 226 182 188 233 0 0 chr3 2135017 2135060 -215902098 - MIR SINE MIR -102 160 118 3914 132 16 3 chr3 2135075 2135702 -215901456 + MER41B LTR ERV1 1 635 0 251 119 0 0 chr3 2135711 2135753 -215901405 + Alu SINE Alu 187 228 -73 227 211 135 0 chr3 2135758 2135810 -215901348 - MIR SINE MIR -199 63 5 329 291 48 0 chr3 2136687 2136790 -215900368 - MIR SINE MIR 0 262 155 696 264 40 54 chr3 2136892 2137168 -215899990 - LTR33 LTR ERVL -249 272 1 1953 164 67 42 chr3 2137417 2137867 -215899291 + LOR1b LTR ERV1 1 461 0 635 333 87 45 chr3 2138223 2138601 -215898557 - ERVL LTR ERVL -661 4866 4431 371 301 103 7 chr3 2138951 2139087 -215898071 - MIR SINE MIR -108 154 6 1293 148 40 37 chr3 2139362 2139687 -215897471 - MER33 DNA MER1_type -5 319 1 180 0 0 0 chr3 2139787 2139807 -215897351 + (GAA)n Simple_repeat Simple_repeat 2 21 0 224 296 133 20 chr3 2139909 2140007 -215897151 - MIR SINE MIR -134 128 20 183 80 0 0 chr3 2140014 2140039 -215897119 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3110 184 50 72 chr3 2140339 2140667 -215896491 + MER45B DNA AcHobo 2 336 -704 5327 80 27 1 chr3 2140667 2141414 -215895744 + MER4E LTR ERV1 1 766 0 3110 184 50 72 chr3 2141414 2141659 -215895499 + MER45B DNA AcHobo 336 554 -486 2220 109 13 0 chr3 2141659 2141961 -215895197 - AluY SINE Alu -5 306 1 3110 184 50 72 chr3 2141961 2142200 -215894958 + MER45B DNA AcHobo 554 797 -243 32516 97 8 38 chr3 2142211 2147748 -215889410 + L1PA6 LINE L1 11 5336 -818 2426 62 0 16 chr3 2147748 2148053 -215889105 + AluY SINE Alu 1 300 -11 32516 97 8 38 chr3 2148053 2148841 -215888317 + L1PA6 LINE L1 5336 6146 -8 1305 141 32 8 chr3 2148841 2149090 -215888068 + MER45B DNA AcHobo 786 1040 0 340 289 0 10 chr3 2149105 2149202 -215887956 - MER117 DNA MER1_type -34 163 68 768 230 57 97 chr3 2149557 2149641 -215887517 - MIR SINE MIR -7 255 169 674 140 0 113 chr3 2149641 2149791 -215887367 + FLAM_C SINE Alu 1 133 0 768 230 57 97 chr3 2149791 2149954 -215887204 - MIR SINE MIR -93 169 18 245 195 0 0 chr3 2150297 2150338 -215886820 - L3 LINE CR1 -10 1567 1527 343 253 142 37 chr3 2150339 2150501 -215886657 + MER117 DNA MER1_type 1 179 -18 568 343 55 17 chr3 2150508 2150744 -215886414 + MIR SINE MIR 2 246 -16 255 286 39 26 chr3 2150842 2150919 -215886239 - MIR3 SINE MIR -48 160 83 387 255 33 72 chr3 2150941 2151094 -215886064 + MIR3 SINE MIR 35 181 -27 303 276 0 13 chr3 2151785 2151861 -215885297 + tRNA-Thr-ACA tRNA tRNA 1 75 -1 752 261 71 14 chr3 2151878 2152089 -215885069 + MIR SINE MIR 3 225 -37 201 250 44 59 chr3 2152135 2152203 -215884955 + L2 LINE L2 1366 1432 -1882 * 370 253 0 141 chr3 2152159 2152329 -215884829 - MIR3 SINE MIR -60 148 3 206 319 160 25 chr3 2152360 2152479 -215884679 + L2 LINE L2 3171 3305 -8 488 294 86 12 chr3 2152565 2152728 -215884430 + MIR SINE MIR 1 175 -87 515 214 26 0 chr3 2152749 2152866 -215884292 + MLT2C1 LTR ERVL 1 120 -277 569 168 81 46 chr3 2153037 2153210 -215883948 + L1MC4 LINE L1 7858 8036 -6 1815 155 3 21 chr3 2153218 2153508 -215883650 + AluJb SINE Alu 3 287 -25 43 47 0 0 chr3 2153513 2153577 -215883581 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr3 2153671 2153700 -215883458 + AT_rich Low_complexity Low_complexity 1 29 0 186 311 90 25 chr3 2154690 2154812 -215882346 - L2 LINE L2 -15 3298 3169 345 234 62 23 chr3 2154907 2155035 -215882123 + HAL1b LINE L1 1216 1348 0 413 193 48 0 chr3 2157367 2157450 -215879708 + MIR3 SINE MIR 82 168 -40 315 264 101 39 chr3 2157477 2157619 -215879539 + MIR SINE MIR 30 145 -63 2208 129 33 30 chr3 2157685 2158048 -215879110 + THE1B LTR MaLR 1 364 0 228 240 72 40 chr3 2158208 2158307 -215878851 + MIR SINE MIR 34 145 -73 399 282 215 19 chr3 2158318 2158527 -215878631 - MIR SINE MIR -1 261 12 228 93 233 0 chr3 2158529 2158572 -215878586 - Charlie1 DNA MER1_type 0 2761 2709 * 453 160 19 19 chr3 2158564 2158670 -215878488 - Charlie1 DNA MER1_type -208 2553 2448 548 279 37 81 chr3 2159446 2159743 -215877415 + L2 LINE L2 2994 3277 -36 226 143 41 20 chr3 2159919 2159968 -215877190 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 502 231 26 8 chr3 2161051 2161168 -215875990 + L2 LINE L2 3154 3272 0 4500 168 37 30 chr3 2161199 2161889 -215875269 + MER6 DNA MER2_type 1 700 -165 1455 119 92 12 chr3 2161889 2162140 -215875018 + AluSg SINE Alu 40 310 0 4500 168 37 30 chr3 2162140 2162308 -215874850 + MER6 DNA MER2_type 700 865 0 247 312 27 54 chr3 2163295 2163481 -215873677 + MIR3 SINE MIR 16 196 -12 612 322 45 25 chr3 2164049 2164294 -215872864 + MIR SINE MIR 13 262 0 271 377 29 58 chr3 2165285 2165561 -215871597 - L2 LINE L2 0 3272 3005 346 262 98 8 chr3 2165582 2165704 -215871454 - MER94 DNA DNA -1 133 1 473 305 145 15 chr3 2167769 2168031 -215869127 - MER102a DNA MER1_type -3 327 32 2338 90 0 7 chr3 2168300 2168610 -215868548 + AluSx SINE Alu 1 308 -4 7082 159 33 43 chr3 2170292 2172739 -215864419 + L1MA6 LINE L1 3791 6214 -86 2215 119 43 27 chr3 2172839 2173208 -215863950 - THE1C LTR MaLR 0 375 1 225 344 47 0 chr3 2173702 2173766 -215863392 + L2 LINE L2 3114 3180 -92 186 137 68 14 chr3 2173845 2173918 -215863240 + GA-rich Low_complexity Low_complexity 2 78 0 2309 112 0 7 chr3 2173950 2174253 -215862905 - AluSx SINE Alu -11 301 1 371 300 106 11 chr3 2174687 2174867 -215862291 - MIR SINE MIR 0 262 66 460 250 75 42 chr3 2175063 2175087 -215862071 + LTR33 LTR ERVL 3 25 -496 2002 142 44 33 chr3 2175087 2175447 -215861711 + THE1B LTR MaLR 1 364 0 460 250 75 42 chr3 2175447 2175634 -215861524 + LTR33 LTR ERVL 25 221 -300 270 56 0 0 chr3 2175697 2175733 -215861425 + (TC)n Simple_repeat Simple_repeat 1 36 0 2725 141 16 22 chr3 2175877 2176387 -215860771 + L1MA7 LINE L1 5613 6119 -172 316 317 178 26 chr3 2176974 2177204 -215859954 - L1MC4a LINE L1 -1928 5880 5616 232 319 11 85 chr3 2178449 2178543 -215858615 - MIR3 SINE MIR -110 98 12 569 256 0 0 chr3 2178702 2178823 -215858335 + FRAM SINE Alu 1 121 -55 242 132 0 0 chr3 2179093 2179131 -215858027 - MER112 DNA MER1_type 0 260 223 17634 44 2 0 chr3 2179141 2181424 -215855734 - L1P LINE L1 -3178 2968 683 5212 32 0 2 chr3 2181424 2182039 -215855119 + L1PA5 LINE L1 5541 6154 0 1190 194 8 25 chr3 2182142 2182379 -215854779 + MER8 DNA MER2_type 7 239 0 304 249 16 124 chr3 2182384 2182470 -215854688 - MER112 DNA MER1_type -88 172 117 2040 88 0 76 chr3 2182470 2182787 -215854371 + AluSc SINE Alu 1 293 -16 304 249 16 124 chr3 2182787 2182893 -215854265 - MER112 DNA MER1_type -143 117 1 1192 77 4 170 chr3 2184114 2184284 -215852874 - L1MA4A LINE L1 -21 6282 6168 1559 186 18 7 chr3 2184284 2184559 -215852599 + AluJo SINE Alu 3 280 -32 1192 77 4 170 chr3 2184559 2184647 -215852511 - L1MA4A LINE L1 -135 6168 6067 3414 159 78 46 chr3 2185935 2186694 -215850464 + LTR1 LTR ERV1 1 783 -2 458 284 50 45 chr3 2187088 2187289 -215849869 - MIR SINE MIR -47 215 14 22 0 0 0 chr3 2188209 2188231 -215848927 + AT_rich Low_complexity Low_complexity 1 22 0 222 276 169 34 chr3 2188564 2188772 -215848386 + MIR SINE MIR 9 251 -11 426 234 89 27 chr3 2189257 2189514 -215847644 + HAL1 LINE L1 981 1253 -1254 254 235 12 47 chr3 2189503 2189588 -215847570 + HAL1 LINE L1 2420 2501 -6 * 398 333 210 26 chr3 2189601 2190186 -215846972 + L2 LINE L2 1784 2476 -838 382 293 110 12 chr3 2190467 2190631 -215846527 + L2 LINE L2 2866 3045 -227 306 50 0 0 chr3 2190732 2190772 -215846386 + (CA)n Simple_repeat Simple_repeat 1 40 0 417 357 51 13 chr3 2191190 2191347 -215845811 + L2 LINE L2 3104 3266 -6 296 356 10 10 chr3 2191857 2191961 -215845197 + MIR SINE MIR 47 150 -112 336 306 36 0 chr3 2192128 2192239 -215844919 + MIR3 SINE MIR 85 199 -9 223 329 12 12 chr3 2192283 2192365 -215844793 - MIR SINE MIR -122 140 59 1616 164 13 33 chr3 2192625 2192752 -215844406 + L1MB5 LINE L1 5590 5718 -456 3022 100 22 2 chr3 2192752 2193204 -215843954 - L1PA13 LINE L1 0 6163 5703 1616 164 13 33 chr3 2193204 2193617 -215843541 + L1MB5 LINE L1 5718 6174 0 457 310 117 29 chr3 2193994 2194275 -215842883 - L2 LINE L2 0 3313 3008 426 328 23 45 chr3 2194664 2194841 -215842317 + MIR3 SINE MIR 1 173 -35 210 368 51 8 chr3 2195950 2196067 -215841091 + MIR SINE MIR 19 140 -68 1008 182 35 5 chr3 2196190 2196393 -215840765 - MER3 DNA MER1_type 0 209 1 529 301 103 66 chr3 2196457 2196712 -215840446 - L3 LINE CR1 -969 608 337 1672 205 0 7 chr3 2196712 2197010 -215840148 - AluJb SINE Alu -16 296 1 529 301 103 66 chr3 2197010 2197073 -215840085 - L3 LINE CR1 -1240 337 278 338 328 93 40 chr3 2197912 2198159 -215838999 + L1MC4 LINE L1 6769 7028 -1014 3368 89 0 11 chr3 2198325 2198774 -215838384 + MLT2A1 LTR ERVL 1 444 0 40792 82 5 9 chr3 2198774 2204452 -215832706 + HERVL-A1-A1 LTR ERVL 1 5654 0 3372 83 0 7 chr3 2204452 2204899 -215832259 + MLT2A1 LTR ERVL 1 444 0 598 232 21 0 chr3 2204899 2205041 -215832117 + ERVL LTR ERVL 548 692 -5072 22954 41 0 0 chr3 2205042 2208670 -215828488 + L1PA5 LINE L1 2524 6151 -3 2206 219 43 13 chr3 2208672 2209298 -215827860 + L1M4 LINE L1 3961 4605 -1541 1269 257 43 104 chr3 2209324 2209903 -215827255 + MER77 LTR ERV1 58 601 -4 2844 191 42 13 chr3 2209923 2210560 -215826598 - MER63C DNA MER1_type -207 723 68 21 0 0 0 chr3 2211920 2211941 -215825217 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 2212063 2212089 -215825069 + AT_rich Low_complexity Low_complexity 1 26 0 879 187 0 0 chr3 2212877 2213016 -215824142 + FRAM SINE Alu 11 149 -27 257 0 30 0 chr3 2213020 2213053 -215824105 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 199 265 0 20 chr3 2213411 2213460 -215823698 - MER5B DNA MER1_type -129 49 2 236 305 93 8 chr3 2213739 2213857 -215823301 + L2 LINE L2 3185 3312 -1 297 213 277 32 chr3 2214983 2215138 -215822020 - MIR3 SINE MIR 0 208 16 * 393 312 153 0 chr3 2215136 2215293 -215821865 + MER5A DNA MER1_type 9 189 0 1642 160 87 3 chr3 2215330 2215617 -215821541 - AluJb SINE Alu -1 311 1 2333 78 20 0 chr3 2216268 2216564 -215820594 + AluY SINE Alu 1 302 -9 308 250 25 12 chr3 2216614 2216694 -215820464 + L2 LINE L2 3233 3313 0 245 314 95 0 chr3 2216743 2216912 -215820246 - L3 LINE CR1 -162 1415 1231 3905 40 0 0 chr3 2217886 2218331 -215818827 - L1PA4 LINE L1 0 6155 5711 3802 9 12 5 chr3 2218331 2218761 -215818397 + L1PA4 LINE L1 5303 5735 -420 193 289 26 53 chr3 2218778 2218854 -215818304 - MIR3 SINE MIR -32 176 103 778 294 23 23 chr3 2219894 2220115 -215817043 - MER58A DNA MER1_type 0 224 4 247 300 65 47 chr3 2220791 2220961 -215816197 - L3 LINE CR1 -59 1518 1346 1552 165 16 41 chr3 2221437 2221630 -215815528 - AluJo SINE Alu -4 308 125 1891 120 49 7 chr3 2221630 2221914 -215815244 + AluSq SINE Alu 1 296 -17 1552 165 16 41 chr3 2221914 2222036 -215815122 - AluJo SINE Alu -187 125 1 340 276 16 0 chr3 2222514 2222637 -215814521 + (TA)n Simple_repeat Simple_repeat 2 126 0 273 269 99 14 chr3 2222637 2222778 -215814380 - L1MC4 LINE L1 -1276 6766 6614 321 311 0 0 chr3 2222784 2222874 -215814284 + L1MC4 LINE L1 6614 6703 -1339 297 0 0 0 chr3 2222875 2222904 -215814254 + (CA)n Simple_repeat Simple_repeat 1 62 0 297 0 0 0 chr3 2222904 2222937 -215814221 + (CA)n Simple_repeat Simple_repeat 2 34 0 1620 117 36 0 chr3 2222952 2223174 -215813984 + MER30 DNA MER1_type 1 230 0 1651 177 0 16 chr3 2223630 2223940 -215813218 - AluJb SINE Alu -7 305 1 369 78 0 0 chr3 2224454 2224505 -215812653 + L1MA8 LINE L1 6216 6266 -25 1676 193 7 16 chr3 2224557 2224863 -215812295 - AluJo SINE Alu -9 303 1 34 24 0 0 chr3 2225165 2225206 -215811952 + AT_rich Low_complexity Low_complexity 1 41 0 302 317 49 28 chr3 2225430 2225572 -215811586 - L2 LINE L2 -196 3076 2932 637 301 59 35 chr3 2225769 2226012 -215811146 - MIR SINE MIR -4 258 3 220 156 0 22 chr3 2226014 2226059 -215811099 - L2 LINE L2 0 3313 3270 492 280 126 6 chr3 2226923 2227098 -215810060 + LTR67 LTR ERVL 353 548 -9 262 282 14 0 chr3 2227264 2227335 -215809823 + MLT1K LTR MaLR 168 239 -349 284 295 78 66 chr3 2227514 2227680 -215809478 - MIR3 SINE MIR -22 186 19 372 301 24 0 chr3 2227744 2227827 -215809331 + L2 LINE L2 3191 3275 -38 22 35 0 0 chr3 2228175 2228204 -215808954 + AT_rich Low_complexity Low_complexity 1 29 0 278 303 34 84 chr3 2229420 2229539 -215807619 - L2 LINE L2 -26 3246 3134 3369 186 13 55 chr3 2229585 2230356 -215806802 - L1M1 LINE L1 -3289 4276 3538 1131 113 38 0 chr3 2230329 2230515 -215806643 - L1 LINE L1 -4338 3227 3035 * 23349 127 21 8 chr3 2230510 2231587 -215805571 - L1M1 LINE L1 -4021 3544 2483 1935 128 0 0 chr3 2231587 2231844 -215805314 - AluSx SINE Alu -11 301 45 23349 127 21 8 chr3 2231844 2234252 -215802906 - L1M1 LINE L1 -5082 2483 13 471 155 0 0 chr3 2234684 2234768 -215802390 + GA-rich Low_complexity Low_complexity 3 86 0 2922 3 0 0 chr3 2234810 2235121 -215802037 + AluYa5 SINE Alu 1 311 0 432 303 70 7 chr3 2235262 2235404 -215801754 - MIR3 SINE MIR -54 154 4 20871 117 16 9 chr3 2235657 2238703 -215798455 - HERV9 LTR ERV1 -5277 3122 55 698 137 68 89 chr3 2238679 2238825 -215798333 - LTR12 LTR ERV1 -130 584 301 * 342 233 11 0 chr3 2238825 2238915 -215798243 - LTR30 LTR ERV1 -79 643 553 355 75 0 0 chr3 2238916 2238969 -215798189 - LTR12 LTR ERV1 -429 285 233 1073 144 43 34 chr3 2239030 2239279 -215797879 - LTR12 LTR ERV1 -456 1982 55 227 239 0 0 chr3 2239279 2239325 -215797833 - LTR30 LTR ERV1 -670 52 7 577 286 94 5 chr3 2240279 2240492 -215796666 + MIR SINE MIR 26 257 -5 1656 202 106 32 chr3 2240868 2241303 -215795855 + MLT1C LTR MaLR 1 467 0 1133 214 27 18 chr3 2241679 2241899 -215795259 + MER58A DNA MER1_type 2 223 -1 748 184 29 7 chr3 2241921 2242057 -215795101 - MER5A DNA MER1_type 0 189 51 1219 209 35 22 chr3 2242176 2242491 -215794667 + L1M4 LINE L1 4687 5005 -1141 24 0 0 0 chr3 2243158 2243182 -215793976 + AT_rich Low_complexity Low_complexity 1 24 0 293 390 45 35 chr3 2243611 2244014 -215793144 - L2 LINE L2 -585 2729 2323 734 234 6 12 chr3 2244085 2244252 -215792906 - MIR SINE MIR -23 239 74 4306 96 12 33 chr3 2244256 2244931 -215792227 - L1PA7 LINE L1 -758 5388 4728 5798 67 3 0 chr3 2244931 2245653 -215791505 + L1PA7 LINE L1 5399 6122 -32 2492 76 0 0 chr3 2245719 2246022 -215791136 + AluY SINE Alu 1 303 -8 779 153 0 58 chr3 2246059 2246196 -215790962 + AluSq/x SINE Alu 1 129 -184 38035 91 8 7 chr3 2246203 2252328 -215784830 + L1PA6 LINE L1 1 6132 -22 333 0 0 0 chr3 2252328 2252365 -215784793 + (CA)n Simple_repeat Simple_repeat 2 38 0 1072 184 0 0 chr3 2252365 2252539 -215784619 + AluJb SINE Alu 131 304 -8 675 301 30 15 chr3 2253123 2253322 -215783836 + MIR3 SINE MIR 4 205 -3 734 290 127 35 chr3 2253457 2253771 -215783387 + MER115 DNA AcHobo 350 692 -1 240 87 43 58 chr3 2254035 2254104 -215783054 + (TTATA)n Simple_repeat Simple_repeat 3 70 0 185 161 179 0 chr3 2254497 2254553 -215782605 - MIR SINE MIR -79 183 118 1527 160 4 30 chr3 2255560 2255829 -215781329 + AluSx SINE Alu 49 310 -2 2122 152 0 0 chr3 2255840 2256150 -215781008 + AluSx SINE Alu 3 312 0 671 274 13 25 chr3 2256332 2256569 -215780589 - AluSx SINE Alu -29 283 50 2160 114 7 3 chr3 2256760 2257058 -215780100 - AluSx SINE Alu -13 299 1 1755 179 3 0 chr3 2259196 2259493 -215777665 + AluJo SINE Alu 1 298 -14 382 279 131 25 chr3 2259546 2259668 -215777490 + L2 LINE L2 3137 3271 -1 1328 130 28 14 chr3 2260077 2260292 -215776866 - L1MC1 LINE L1 0 6333 6116 1060 89 0 7 chr3 2260292 2260427 -215776731 - AluSc SINE Alu -21 288 155 944 123 7 32 chr3 2260431 2260585 -215776573 - L1MC1 LINE L1 -205 6128 5979 871 266 40 4 chr3 2260716 2260942 -215776216 + MIR SINE MIR 2 235 -27 310 167 61 0 chr3 2261051 2261117 -215776041 + MER116 DNA Mariner 1 70 -10 254 178 0 0 chr3 2262754 2262799 -215774359 - MIR SINE MIR -137 125 81 293 301 150 0 chr3 2262829 2262942 -215774216 - L2 LINE L2 -6 3266 3137 673 286 161 23 chr3 2262947 2263289 -215773869 - L2 LINE L2 0 3313 2925 742 304 206 19 chr3 2263502 2263963 -215773195 - L2 LINE L2 -463 2851 2305 252 357 56 0 chr3 2264074 2264200 -215772958 - L2 LINE L2 -215 3057 2925 417 317 72 24 chr3 2264358 2264525 -215772633 + MIR3 SINE MIR 23 197 -11 200 241 17 0 chr3 2264546 2264604 -215772554 + (TA)n Simple_repeat Simple_repeat 2 60 0 780 242 111 75 chr3 2264655 2265015 -215772143 + MER21B LTR ERV1 6 378 -485 741 196 37 0 chr3 2265196 2265359 -215771799 + MER3 DNA MER1_type 1 122 -87 839 240 84 51 chr3 2265387 2265683 -215771475 + MER21B LTR ERV1 408 713 -150 22 0 0 0 chr3 2265695 2265717 -215771441 + AT_rich Low_complexity Low_complexity 1 22 0 605 322 58 37 chr3 2265821 2266062 -215771096 + MIR SINE MIR 18 262 0 858 203 57 10 chr3 2266167 2266359 -215770799 + MER3 DNA MER1_type 1 201 -8 323 289 29 0 chr3 2266722 2266826 -215770332 + MIR SINE MIR 156 262 0 1682 264 64 38 chr3 2268412 2269049 -215768109 + MER76 LTR ERV 1 654 -34 1557 142 59 4 chr3 2269272 2269511 -215767647 - AluJb SINE Alu -58 254 3 3321 214 64 36 chr3 2271105 2272315 -215764843 - L1ME1 LINE L1 -9 6437 5178 3012 166 10 53 chr3 2272315 2272894 -215764264 + MLT2B3 LTR ERVL 1 554 0 3321 214 64 36 chr3 2272894 2273100 -215764058 - L1ME1 LINE L1 -1268 5178 4979 5957 136 35 7 chr3 2273102 2274849 -215762309 - L1MA3 LINE L1 0 7724 5939 * 12479 171 27 10 chr3 2274848 2277124 -215760034 - L1MA3 LINE L1 -3160 4405 1348 1229 167 121 74 chr3 2277124 2277554 -215759604 + LTR7 LTR ERV1 1 450 0 12479 171 27 10 chr3 2277554 2278913 -215758245 - L1MA3 LINE L1 -6217 1348 13 2732 241 65 2 chr3 2278916 2279749 -215757409 - L1ME1 LINE L1 -1443 4983 4099 5047 181 48 50 chr3 2279749 2280994 -215756164 + L1MCa LINE L1 41 1283 -5143 771 224 106 8 chr3 2280993 2281239 -215755919 - L1ME1 LINE L1 -2373 4053 3784 * 297 347 56 0 chr3 2281466 2281610 -215755548 + MIR3 SINE MIR 54 205 -3 1171 237 95 43 chr3 2281815 2282014 -215755144 + L1M4 LINE L1 4333 4520 -1626 2367 97 0 0 chr3 2282014 2282304 -215754854 - AluSx SINE Alu -22 290 1 1171 237 95 43 chr3 2282304 2282724 -215754434 + L1M4 LINE L1 4520 4984 -1162 607 102 51 0 chr3 2282724 2282822 -215754336 - L1PA13 LINE L1 -2 6161 6059 2750 111 15 0 chr3 2282824 2283231 -215753927 + MLT2A2 LTR ERVL 1 413 -40 326 183 42 0 chr3 2283244 2283315 -215753843 - L1ME1 LINE L1 -4358 2068 1995 400 70 0 0 chr3 2283320 2283377 -215753781 + MLT2B1 LTR ERVL 464 520 0 1396 83 10 0 chr3 2283377 2283582 -215753576 - L1PA13 LINE L1 -102 6061 5855 428 281 17 6 chr3 2283593 2283771 -215753387 + L1ME LINE L1 5009 5188 -958 363 202 0 24 chr3 2283804 2283888 -215753270 + L1ME LINE L1 5427 5508 -656 * 29494 100 15 7 chr3 2283886 2289620 -215747538 + L1PA7 LINE L1 648 6453 -16 366 0 56 0 chr3 2289622 2289676 -215747482 + (TA)n Simple_repeat Simple_repeat 1 57 0 40 0 0 0 chr3 2289825 2289865 -215747293 + AT_rich Low_complexity Low_complexity 1 40 0 802 166 18 31 chr3 2290253 2290416 -215746742 + MLT1B LTR MaLR 185 345 -45 22 35 0 0 chr3 2290420 2290449 -215746709 + AT_rich Low_complexity Low_complexity 1 29 0 478 267 47 34 chr3 2291375 2291586 -215745572 - MIR3 SINE MIR -39 223 10 527 294 43 27 chr3 2291818 2292002 -215745156 + MER5A DNA MER1_type 1 187 -2 227 190 17 0 chr3 2292658 2292716 -215744442 + CT-rich Low_complexity Low_complexity 4 62 0 680 273 18 6 chr3 2292793 2292958 -215744200 + MIR3 SINE MIR 33 199 -9 270 0 0 0 chr3 2293550 2293580 -215743578 + (TG)n Simple_repeat Simple_repeat 2 31 0 484 259 0 36 chr3 2293741 2293853 -215743305 - L2 LINE L2 0 3272 3165 276 223 88 34 chr3 2293966 2294114 -215743044 + L1ME4a LINE L1 5965 6120 -1 241 243 121 43 chr3 2294229 2294369 -215742789 + L1ME4a LINE L1 5955 6105 -16 191 309 119 8 chr3 2294933 2295059 -215742099 - MIR SINE MIR -7 201 62 736 295 13 30 chr3 2295367 2295601 -215741557 + MIR SINE MIR 14 243 -19 410 325 7 13 chr3 2295915 2296069 -215741089 + MIR SINE MIR 1 153 -109 266 202 95 24 chr3 2297053 2297137 -215740021 + MLT1K LTR MaLR 492 581 -7 265 321 46 9 chr3 2298251 2298360 -215738798 + MIR SINE MIR 148 260 -2 2316 110 0 3 chr3 2298381 2298691 -215738467 - AluSc SINE Alu 0 309 1 330 302 86 7 chr3 2298763 2298902 -215738256 - MIR SINE MIR -111 151 2 840 217 33 5 chr3 2299019 2299203 -215737955 - MER5A DNA MER1_type 0 189 1 494 261 106 6 chr3 2299355 2299535 -215737623 - L2 LINE L2 -2 3311 3114 407 269 156 19 chr3 2300050 2300262 -215736896 - L2 LINE L2 -228 3044 2804 234 345 84 28 chr3 2301000 2301142 -215736016 - MIR SINE MIR -107 155 6 548 322 70 35 chr3 2301547 2301746 -215735412 + MIR SINE MIR 56 261 -1 1909 167 10 6 chr3 2301854 2302165 -215734993 + AluJo SINE Alu 1 312 0 2644 219 95 37 chr3 2302259 2303014 -215734144 - MER21B LTR ERV1 -52 811 13 356 362 8 8 chr3 2303361 2303488 -215733670 + MIR3 SINE MIR 76 202 -6 305 254 175 26 chr3 2306256 2306370 -215730788 + MIR3 SINE MIR 38 168 -40 26 30 0 0 chr3 2306370 2306403 -215730755 + AT_rich Low_complexity Low_complexity 1 33 0 208 383 0 54 chr3 2306806 2306973 -215730185 - L2 LINE L2 -218 3054 2897 886 316 149 25 chr3 2307090 2307613 -215729545 - L2 LINE L2 -573 2741 2154 1196 215 34 4 chr3 2308076 2308309 -215728849 - AluJb SINE Alu -23 289 50 658 182 0 0 chr3 2308595 2308705 -215728453 + FLAM_A SINE Alu 1 110 -32 195 42 0 0 chr3 2308712 2308736 -215728422 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2814 181 37 15 chr3 2308736 2309915 -215727243 - L1MC1 LINE L1 -12 6321 4992 13436 84 11 1 chr3 2309919 2312527 -215724631 - L1PA7 LINE L1 -16 6138 3509 269 317 99 5 chr3 2312656 2312858 -215724300 + L1ME LINE L1 5612 5832 -289 31 82 0 0 chr3 2312919 2312992 -215724166 + AT_rich Low_complexity Low_complexity 1 73 0 338 357 61 5 chr3 2313511 2313713 -215723445 + MIR SINE MIR 20 232 -30 1469 213 68 24 chr3 2313776 2314157 -215723001 - LTR9 LTR ERV1 0 612 215 24856 111 20 18 chr3 2314187 2318514 -215718644 - L1P LINE L1 -1784 4362 11 2282 112 7 0 chr3 2318516 2318821 -215718337 - AluSg SINE Alu -3 307 1 264 368 18 18 chr3 2319962 2320076 -215717082 + MIR SINE MIR 34 147 -115 10438 139 46 38 chr3 2321393 2322022 -215715136 + Tigger1 DNA MER2_type 10 632 -1786 1638 149 30 11 chr3 2322022 2322291 -215714867 + AluSx SINE Alu 1 274 -38 10438 139 46 38 chr3 2322291 2323756 -215713402 + Tigger1 DNA MER2_type 632 2122 -296 772 133 67 0 chr3 2323766 2323901 -215713257 - Tigger1 DNA MER2_type -1334 1084 941 * 1459 156 44 10 chr3 2323886 2324181 -215712977 + Tigger1 DNA MER2_type 2114 2418 0 279 79 0 0 chr3 2324463 2324501 -215712657 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr3 2324554 2324575 -215712583 + AT_rich Low_complexity Low_complexity 1 21 0 40643 35 22 1 chr3 2325370 2331410 -215705748 + L1PA2 LINE L1 1 6167 0 23 33 0 0 chr3 2331863 2331893 -215705265 + AT_rich Low_complexity Low_complexity 1 30 0 343 284 74 14 chr3 2332490 2332638 -215704520 - Charlie8 DNA MER1_type -2256 161 5 1001 156 25 0 chr3 2332714 2332874 -215704284 + AluSg/x SINE Alu 135 298 -12 957 195 91 0 chr3 2332963 2333184 -215703974 + MLT1D LTR MaLR 264 504 -1 1144 242 104 41 chr3 2334559 2335047 -215702111 - MLT1K LTR MaLR -58 530 12 237 366 60 25 chr3 2335603 2335838 -215701320 + L2 LINE L2 2809 3051 -221 2237 106 3 13 chr3 2336973 2337284 -215699874 + AluSx SINE Alu 1 308 -4 15777 32 3 0 chr3 2337706 2339690 -215697468 - L1PA8 LINE L1 -848 5298 3309 5739 97 0 34 chr3 2339690 2340568 -215696590 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 2340615 2340639 -215696519 + (T)n Simple_repeat Simple_repeat 1 24 0 253 376 86 4 chr3 2340722 2340913 -215696245 - MIR3 SINE MIR -58 150 2 186 43 0 0 chr3 2340998 2341021 -215696137 + (TG)n Simple_repeat Simple_repeat 2 24 0 1089 41 75 0 chr3 2341299 2341446 -215695712 - L1PA4 LINE L1 -6 6149 5992 407 325 20 24 chr3 2342082 2342267 -215694891 - MIR SINE MIR -27 235 52 205 204 23 0 chr3 2342459 2342503 -215694655 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 2342503 2342548 -215694610 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 2342548 2342573 -215694585 + (CA)n Simple_repeat Simple_repeat 1 25 0 269 339 110 9 chr3 2343423 2343532 -215693626 + MIR3 SINE MIR 86 205 -3 495 0 0 0 chr3 2343588 2343643 -215693515 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1512 159 12 12 chr3 2343660 2343911 -215693247 - AluJo SINE Alu -49 263 13 806 313 57 32 chr3 2344339 2344745 -215692413 - LTR16A LTR ERVL -34 416 1 333 159 95 0 chr3 2344850 2344913 -215692245 + L1MB7 LINE L1 5552 5620 -554 1497 183 59 7 chr3 2344913 2345186 -215691972 + AluJo SINE Alu 1 287 -25 306 206 0 16 chr3 2345191 2345254 -215691904 - L1MCa LINE L1 -4359 2067 2006 2020 213 59 6 chr3 2345257 2345796 -215691362 + L1MB7 LINE L1 5603 6170 -14 232 206 38 0 chr3 2345804 2345935 -215691223 + G-rich Low_complexity Low_complexity 3 138 0 15777 32 3 0 chr3 2346101 2348085 -215689073 - L1PA2 LINE L1 -848 5298 3309 6986 30 0 0 chr3 2348085 2348928 -215688230 + L1PA2 LINE L1 5322 6167 0 23 33 0 0 chr3 2349381 2349411 -215687747 + AT_rich Low_complexity Low_complexity 1 30 0 343 284 74 14 chr3 2350008 2350156 -215687002 - Charlie8 DNA MER1_type -2256 161 5 1001 156 25 0 chr3 2350232 2350392 -215686766 + AluSg/x SINE Alu 137 300 -12 957 195 91 0 chr3 2350481 2350702 -215686456 + MLT1D LTR MaLR 264 504 -1 1144 242 104 41 chr3 2352077 2352565 -215684593 - MLT1K LTR MaLR -58 530 12 237 366 60 25 chr3 2353121 2353356 -215683802 + L2 LINE L2 2809 3051 -221 2229 107 3 13 chr3 2354491 2354801 -215682357 + AluSx SINE Alu 1 307 -5 15777 32 3 0 chr3 2355223 2357207 -215679951 - L1PA8 LINE L1 -848 5298 3309 5758 95 0 34 chr3 2357207 2358085 -215679073 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 2358132 2358156 -215679002 + (T)n Simple_repeat Simple_repeat 1 24 0 253 376 86 4 chr3 2358239 2358430 -215678728 - MIR3 SINE MIR -58 150 2 186 43 0 0 chr3 2358515 2358538 -215678620 + (TG)n Simple_repeat Simple_repeat 2 24 0 1089 41 75 0 chr3 2358816 2358963 -215678195 - L1PA4 LINE L1 -6 6149 5992 407 325 20 24 chr3 2359599 2359784 -215677374 - MIR SINE MIR -27 235 52 205 204 23 0 chr3 2359976 2360020 -215677138 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 2360020 2360065 -215677093 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 2360065 2360090 -215677068 + (CA)n Simple_repeat Simple_repeat 1 25 0 269 339 110 9 chr3 2360940 2361049 -215676109 + MIR3 SINE MIR 86 205 -3 423 0 0 0 chr3 2361105 2361152 -215676006 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1512 159 12 12 chr3 2361169 2361420 -215675738 - AluJo SINE Alu -49 263 13 806 313 57 32 chr3 2361848 2362254 -215674904 - LTR16A LTR ERVL -34 416 1 333 159 95 0 chr3 2362359 2362422 -215674736 + L1MB7 LINE L1 5552 5620 -554 1497 183 59 7 chr3 2362422 2362695 -215674463 + AluJo SINE Alu 1 287 -25 396 155 0 0 chr3 2362695 2362766 -215674392 + (TA)n Simple_repeat Simple_repeat 1 71 0 2017 213 59 6 chr3 2362766 2363305 -215673853 + L1MB7 LINE L1 5603 6170 -14 622 176 16 0 chr3 2363313 2363624 -215673534 + G-rich Low_complexity Low_complexity 1 316 0 180 0 0 0 chr3 2363889 2363909 -215673249 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 315 320 120 0 chr3 2364150 2364300 -215672858 - MIR SINE MIR -14 248 81 277 332 91 15 chr3 2364611 2364810 -215672348 - LTR16A LTR ERVL -5 445 232 643 291 76 64 chr3 2365137 2365559 -215671599 - MLT1L LTR MaLR -188 427 1 188 263 35 35 chr3 2366789 2366846 -215670312 - L3 LINE CR1 -5 1572 1516 214 299 15 15 chr3 2366929 2366996 -215670162 - MER5B DNA MER1_type -111 67 1 21 36 0 0 chr3 2367121 2367149 -215670009 + AT_rich Low_complexity Low_complexity 1 28 0 206 139 28 0 chr3 2367680 2367716 -215669442 + (CAT)n Simple_repeat Simple_repeat 2 38 0 527 215 38 51 chr3 2368743 2368901 -215668257 + MER5C DNA MER1_type 169 324 0 359 283 72 17 chr3 2369141 2369321 -215667837 + L1MC4a LINE L1 5710 5899 -1909 781 120 66 24 chr3 2369835 2370002 -215667156 + L1MA8 LINE L1 6113 6286 -5 192 366 98 60 chr3 2370107 2370364 -215666794 - L2 LINE L2 -5 3267 2992 1624 173 125 48 chr3 2370364 2370595 -215666563 - MLT1C LTR MaLR -1 466 254 360 0 0 0 chr3 2370595 2370635 -215666523 + (TG)n Simple_repeat Simple_repeat 2 41 0 1624 173 125 48 chr3 2370635 2370836 -215666322 - MLT1C LTR MaLR -213 254 1 192 366 98 60 chr3 2370836 2370925 -215666233 - L2 LINE L2 -280 2992 2908 251 351 9 27 chr3 2370979 2371090 -215666068 - L2 LINE L2 -613 2701 2593 465 252 84 15 chr3 2371182 2371313 -215665845 - MIR SINE MIR -62 200 61 2001 186 14 3 chr3 2373471 2373832 -215663326 - MLT1A1 LTR MaLR 0 365 1 1662 191 13 3 chr3 2373895 2374199 -215662959 + AluJb SINE Alu 1 307 -5 327 49 0 0 chr3 2374203 2374244 -215662914 + (GGA)n Simple_repeat Simple_repeat 3 43 0 336 259 126 21 chr3 2375098 2375241 -215661917 + L1ME4a LINE L1 5962 6119 -2 21 36 0 0 chr3 2375642 2375670 -215661488 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 2375967 2376001 -215661157 + AT_rich Low_complexity Low_complexity 1 34 0 929 172 84 0 chr3 2376685 2376888 -215660270 + Charlie1 DNA MER1_type 6 225 -2536 510 200 16 8 chr3 2376896 2377021 -215660137 + Charlie1 DNA MER1_type 2632 2757 -4 1795 203 120 0 chr3 2377091 2377509 -215659649 - MER119 DNA MER1_type -110 473 6 1802 111 0 24 chr3 2378317 2378570 -215658588 + AluSg SINE Alu 48 294 -16 297 262 171 37 chr3 2379075 2379239 -215657919 - MIR SINE MIR -70 192 7 190 253 191 43 chr3 2379324 2379486 -215657672 - L3b LINE CR1 -110 1473 1288 214 291 36 0 chr3 2379536 2379591 -215657567 + L2 LINE L2 3251 3307 -6 274 270 54 0 chr3 2380545 2380619 -215656539 - MER63 DNA MER1_type -5 1056 979 266 214 0 0 chr3 2380621 2380677 -215656481 - MER63 DNA MER1_type -311 750 695 334 303 40 59 chr3 2380724 2380876 -215656282 + MIR SINE MIR 104 252 -10 202 268 0 62 chr3 2381115 2381212 -215655946 + CT-rich Low_complexity Low_complexity 2 92 0 389 341 28 22 chr3 2383748 2383927 -215653231 + MIR SINE MIR 47 226 -36 453 216 20 0 chr3 2383941 2384043 -215653115 - MER3 DNA MER1_type -25 184 81 1273 181 3 100 chr3 2384044 2384364 -215652794 + AluJb SINE Alu 12 300 -12 2573 79 31 8 chr3 2386135 2386491 -215650667 - THE1B LTR MaLR 0 364 1 1250 212 24 44 chr3 2387165 2387462 -215649696 - AluJo SINE Alu -21 291 1 280 189 42 95 chr3 2389229 2389280 -215647878 + MIR SINE MIR 173 218 -44 1985 161 0 3 chr3 2389280 2389584 -215647574 + AluSx SINE Alu 1 303 -9 280 189 42 95 chr3 2389584 2389627 -215647531 + MIR SINE MIR 218 262 0 198 370 0 14 chr3 2389627 2389700 -215647458 - MIR SINE MIR -174 88 17 2304 157 0 42 chr3 2389742 2390176 -215646982 + MSTA LTR MaLR 1 416 -12 24 0 0 0 chr3 2390764 2390788 -215646370 + AT_rich Low_complexity Low_complexity 1 24 0 332 357 134 34 chr3 2390959 2391853 -215645305 - L2 LINE L2 -338 2976 1958 3598 117 43 23 chr3 2391853 2392451 -215644707 - MER4B LTR ERV1 0 610 1 332 357 134 34 chr3 2392451 2392613 -215644545 - L2 LINE L2 -1356 1958 1814 27 29 0 0 chr3 2393240 2393274 -215643884 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr3 2393283 2393321 -215643837 + GC_rich Low_complexity Low_complexity 1 38 0 2377 55 7 0 chr3 2393902 2394194 -215642964 - AluSp SINE Alu -19 294 1 271 258 15 0 chr3 2394311 2394377 -215642781 + MIR SINE MIR 87 153 -109 4412 109 24 46 chr3 2394499 2394850 -215642308 - MER4E LTR ERV1 0 766 409 2142 118 7 0 chr3 2394850 2395139 -215642019 - AluSx SINE Alu -21 291 1 4412 109 24 46 chr3 2395139 2395570 -215641588 - MER4E LTR ERV1 -357 409 1 362 252 63 9 chr3 2395752 2395863 -215641295 - L2 LINE L2 0 3313 3197 28 0 0 0 chr3 2396029 2396057 -215641101 + AT_rich Low_complexity Low_complexity 1 28 0 1428 155 78 42 chr3 2397509 2397793 -215639365 + AluJo SINE Alu 1 294 -18 183 382 0 0 chr3 2397995 2398050 -215639108 - MIR SINE MIR -204 58 4 229 314 117 22 chr3 2398276 2398413 -215638745 - MIR SINE MIR -58 204 55 2704 125 82 31 chr3 2398579 2399164 -215637994 - MER4B LTR ERV1 0 779 1 654 254 82 44 chr3 2399215 2399534 -215637624 - MLT1K LTR MaLR 0 588 258 1617 165 43 25 chr3 2399622 2399949 -215637209 - MER7A DNA MER2_type -14 332 2 892 175 56 12 chr3 2402317 2402477 -215634681 + AluJb SINE Alu 134 300 -12 1136 230 143 31 chr3 2403617 2404065 -215633093 + MLT1J LTR MaLR 1 498 -13 372 121 0 0 chr3 2404717 2404775 -215632383 + L1MB8 LINE L1 6113 6170 -8 22 70 0 0 chr3 2405473 2405516 -215631642 + AT_rich Low_complexity Low_complexity 1 43 0 2266 132 0 0 chr3 2405521 2405825 -215631333 + AluSx SINE Alu 1 304 -8 9834 53 11 0 chr3 2405829 2407079 -215630079 + HSMAR1 DNA Mariner 24 1287 0 785 161 0 0 chr3 2407157 2407281 -215629877 + FLAM_C SINE Alu 1 124 -9 361 252 33 16 chr3 2407477 2407624 -215629534 + MIR SINE MIR 70 260 -2 372 284 20 0 chr3 2407750 2407852 -215629306 + Zaphod DNA AcHobo 12 115 -3916 1879 198 46 12 chr3 2407883 2408364 -215628794 + L1MC3 LINE L1 3657 4153 -1993 4414 168 66 16 chr3 2408365 2408382 -215628776 + L1MC3 LINE L1 5273 5288 -2497 1997 152 7 0 chr3 2408382 2408679 -215628479 + AluSx SINE Alu 1 299 -13 4414 168 66 16 chr3 2408679 2409008 -215628150 + L1MC3 LINE L1 5288 5599 -2186 1695 174 142 12 chr3 2409008 2409416 -215627742 - LOR1b LTR ERV1 0 461 1 4414 168 66 16 chr3 2409416 2410113 -215627045 + L1MC3 LINE L1 5599 6369 -1416 480 170 76 82 chr3 2410113 2410284 -215626874 - LTR48 LTR ERV1 -4 783 614 1479 187 132 46 chr3 2410313 2410752 -215626406 - LTR48 LTR ERV1 -310 477 1 5899 140 39 94 chr3 2410768 2412228 -215624930 + L1MC3 LINE L1 6380 7759 -26 896 174 6 45 chr3 2412262 2412440 -215624718 + FRAM SINE Alu 1 171 -5 782 192 53 70 chr3 2412440 2412635 -215624523 + L1M3 LINE L1 5481 5686 -485 259 149 0 21 chr3 2412635 2412682 -215624476 + Alu SINE Alu 245 290 -12 782 192 53 70 chr3 2412682 2412812 -215624346 + L1M3 LINE L1 5686 5817 -354 * 1932 171 49 63 chr3 2412805 2413313 -215623845 + L1MB7 LINE L1 5676 6176 -8 243 227 0 0 chr3 2413313 2413379 -215623779 + GA-rich Low_complexity Low_complexity 5 70 0 842 256 96 14 chr3 2413415 2413696 -215623462 + Zaphod DNA AcHobo 154 457 -3574 234 197 212 0 chr3 2413714 2413780 -215623378 + Zaphod DNA AcHobo 584 663 -3368 * 971 191 221 13 chr3 2413779 2414076 -215623082 + Zaphod DNA AcHobo 3282 3640 -391 927 197 25 142 chr3 2414076 2414603 -215622555 - MER4C LTR ERV1 0 465 1 2257 146 28 8 chr3 2414612 2414969 -215622189 - THE1B LTR MaLR 0 364 1 386 301 7 0 chr3 2415018 2415154 -215622004 - MER4C-int LTR ERV1 -79 6519 6383 262 237 30 69 chr3 2415151 2415282 -215621876 - MER4C-int LTR ERV1 -175 6423 6298 * 329 185 0 25 chr3 2415282 2415363 -215621795 + (TATG)n Simple_repeat Simple_repeat 4 82 0 207 0 0 0 chr3 2415365 2415388 -215621770 + (CA)n Simple_repeat Simple_repeat 2 24 0 8705 136 52 22 chr3 2415390 2415639 -215621519 - MER4C-int LTR ERV1 -491 5840 5600 1720 134 0 0 chr3 2415639 2415878 -215621280 - AluSx SINE Alu -73 239 1 8705 136 52 22 chr3 2415878 2416279 -215620879 - MER4C-int LTR ERV1 -731 5600 5212 1875 174 0 10 chr3 2416279 2416577 -215620581 - AluSx SINE Alu -17 295 1 8705 136 52 22 chr3 2416577 2417691 -215619467 - MER4C-int LTR ERV1 -1118 5213 4022 1420 214 3 26 chr3 2417704 2418007 -215619151 + AluJb SINE Alu 15 310 -2 25 0 0 0 chr3 2418009 2418034 -215619124 + AT_rich Low_complexity Low_complexity 1 25 0 358 169 0 0 chr3 2418034 2418105 -215619053 - MER4C-int LTR ERV1 -3623 4497 4427 2114 127 74 3 chr3 2418105 2418444 -215618714 - THE1B LTR MaLR -1 363 1 11391 91 7 29 chr3 2418444 2420059 -215617099 - THE1B-int LTR MaLR 0 1580 1 2401 127 31 6 chr3 2420059 2420414 -215616744 - THE1B LTR MaLR 0 364 1 3491 181 72 97 chr3 2420414 2421302 -215615856 - MER4C-int LTR ERV1 -1444 3437 2402 2115 123 0 13 chr3 2421302 2421610 -215615548 + AluSx SINE Alu 1 304 -8 3491 181 72 97 chr3 2421610 2422148 -215615010 - MER4C-int LTR ERV1 -2479 2402 1852 266 232 245 60 chr3 2422148 2422381 -215614777 - MER34C LTR ERV1 -155 430 155 251 205 301 12 chr3 2422381 2422464 -215614694 - MER4C-int LTR ERV1 -4135 988 882 2406 164 55 17 chr3 2422467 2423173 -215613985 + LTR1B LTR ERV1 1 785 0 943 184 0 153 chr3 2423175 2423463 -215613695 - MER4C-int LTR ERV1 -4149 3388 3145 1384 189 97 70 chr3 2423545 2423603 -215613555 - MER4C-int LTR ERV1 -4568 1763 1708 1496 223 7 3 chr3 2423603 2423895 -215613263 + AluJo SINE Alu 1 293 -19 1384 189 97 70 chr3 2423895 2424239 -215612919 - MER4C-int LTR ERV1 -4623 1708 1350 589 146 131 106 chr3 2424329 2424444 -215612714 - MER4C-int LTR ERV1 -4933 1398 1287 383 250 0 0 chr3 2424444 2424516 -215612642 - tRNA-Glu-GAG tRNA tRNA -1 74 3 589 146 131 106 chr3 2424516 2424711 -215612447 - MER4C-int LTR ERV1 -5044 1287 994 817 239 73 19 chr3 2425168 2425420 -215611738 - MER4C-int LTR ERV1 -6162 436 81 2095 116 0 55 chr3 2425420 2425748 -215611410 + AluSg SINE Alu 1 310 0 817 239 73 19 chr3 2425748 2425834 -215611324 - MER4C-int LTR ERV1 -6517 81 1 1216 200 37 134 chr3 2425837 2426352 -215610806 - MER4C LTR ERV1 0 465 1 1140 231 28 3 chr3 2426352 2426634 -215610524 + Zaphod DNA AcHobo 3637 3925 -106 375 141 0 0 chr3 2426944 2427008 -215610150 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 749 189 6 89 chr3 2427859 2428039 -215609119 + FRAM SINE Alu 1 164 -12 262 305 0 12 chr3 2428622 2428704 -215608454 + L2 LINE L2 3134 3214 -58 849 278 85 39 chr3 2429049 2429459 -215607699 - LTR16A LTR ERVL -5 445 17 195 268 18 0 chr3 2429480 2429536 -215607622 - MER5A DNA MER1_type -6 183 127 1992 143 0 3 chr3 2429536 2429823 -215607335 + AluJb SINE Alu 1 286 -26 276 158 0 0 chr3 2429823 2429880 -215607278 + (CA)n Simple_repeat Simple_repeat 1 57 0 795 193 0 0 chr3 2429880 2430015 -215607143 - MER5A DNA MER1_type -53 136 2 576 331 48 51 chr3 2430142 2430577 -215606581 - L2 LINE L2 -504 2810 2377 242 208 57 19 chr3 2431897 2431950 -215605208 - MIR SINE MIR -5 257 203 2098 135 0 0 chr3 2431998 2432286 -215604872 + AluSx SINE Alu 1 288 -24 185 233 0 23 chr3 2432672 2432715 -215604443 - MIR SINE MIR -62 146 105 180 402 51 8 chr3 2432742 2432859 -215604299 + MER5A DNA MER1_type 49 170 -19 515 266 62 35 chr3 2433461 2433687 -215603471 + L1ME LINE L1 5547 5778 -343 1539 92 0 0 chr3 2433818 2434024 -215603134 + L1PA8A LINE L1 10 215 -5660 * 27904 129 12 13 chr3 2434021 2438330 -215598828 + L1PA8A LINE L1 1022 5362 -1084 2021 113 0 34 chr3 2438330 2438642 -215598516 + AluSp SINE Alu 1 302 0 27904 129 12 13 chr3 2438642 2439725 -215597433 + L1PA8A LINE L1 5362 6445 -1 1919 108 0 73 chr3 2439745 2440061 -215597097 - AluSg SINE Alu -9 301 9 288 137 0 0 chr3 2440065 2440116 -215597042 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr3 2440898 2440921 -215596237 + AT_rich Low_complexity Low_complexity 1 23 0 625 217 0 0 chr3 2441662 2441777 -215595381 - MIR SINE MIR -136 126 12 249 284 108 68 chr3 2441936 2442112 -215595046 + MIR SINE MIR 56 238 -24 180 0 0 0 chr3 2442467 2442487 -215594671 + (A)n Simple_repeat Simple_repeat 1 20 0 305 311 48 0 chr3 2442581 2442684 -215594474 - L3b LINE CR1 -199 1384 1277 588 219 9 0 chr3 2442731 2442845 -215594313 - Charlie1 DNA MER1_type -1 2760 2646 657 212 8 8 chr3 2442852 2442970 -215594188 + FLAM_C SINE Alu 3 120 -23 2486 48 0 3 chr3 2442996 2443285 -215593873 - AluY SINE Alu -23 288 1 880 221 103 0 chr3 2443294 2443498 -215593660 - Charlie1 DNA MER1_type -2536 225 1 1641 179 43 13 chr3 2443586 2443888 -215593270 - AluJo SINE Alu -1 311 1 507 236 182 32 chr3 2444564 2444784 -215592374 - MIR SINE MIR -8 254 2 1732 173 0 23 chr3 2444802 2445108 -215592050 + AluJb SINE Alu 2 300 -12 537 273 23 102 chr3 2446357 2446661 -215590497 + Charlie8 DNA MER1_type 9 288 -2129 2188 95 3 0 chr3 2447307 2447641 -215589517 - AluSq SINE Alu 0 335 1 230 143 71 0 chr3 2448438 2448480 -215588678 + Tigger6b DNA MER2_type 818 862 -735 1836 144 0 47 chr3 2449029 2449232 -215587926 - AluJo SINE Alu -24 288 102 2372 103 71 8 chr3 2449232 2449583 -215587575 - THE1C LTR MaLR -2 373 1 1836 144 0 47 chr3 2449583 2449677 -215587481 - AluJo SINE Alu -210 102 5 2009 147 6 22 chr3 2450060 2450372 -215586786 - AluSx SINE Alu -5 307 1 342 279 55 24 chr3 2451463 2451628 -215585530 - MIR3 SINE MIR -24 184 15 720 209 144 56 chr3 2452186 2452375 -215584783 + L1ME4a LINE L1 5667 5838 -283 1617 198 27 3 chr3 2452375 2452668 -215584490 + AluJo SINE Alu 1 300 -12 720 209 144 56 chr3 2452668 2452798 -215584360 + L1ME4a LINE L1 5838 6014 -107 33862 35 2 2 chr3 2453099 2457139 -215580019 - L1P LINE L1 -1633 4513 472 7124 36 0 0 chr3 2457134 2458386 -215578772 + L1P1 LINE L1 4554 5805 -350 * 23 0 0 0 chr3 2458783 2458806 -215578352 + AT_rich Low_complexity Low_complexity 1 23 0 781 253 21 11 chr3 2459383 2459569 -215577589 - MER5A DNA MER1_type 0 189 2 609 276 134 32 chr3 2459637 2459981 -215577177 - L2 LINE L2 -1 3312 2934 934 259 59 8 chr3 2461409 2461645 -215575513 - MIR SINE MIR 0 262 15 2070 122 25 0 chr3 2461762 2462048 -215575110 + AluSx SINE Alu 1 293 -19 21 95 0 0 chr3 2462103 2462166 -215574992 + AT_rich Low_complexity Low_complexity 1 63 0 786 274 34 1 chr3 2462299 2462518 -215574640 - MIR SINE MIR -6 256 30 859 219 72 0 chr3 2462806 2463085 -215574073 + L1MEc LINE L1 2020 2318 -4078 479 256 0 0 chr3 2463064 2463185 -215573973 + L1MEc LINE L1 3433 3553 -2662 * 525 217 19 9 chr3 2463188 2463294 -215573864 + AluJo SINE Alu 116 222 -90 2806 224 54 15 chr3 2463320 2464101 -215573057 + L1MEc LINE L1 3584 4394 -1821 1611 157 102 4 chr3 2464616 2464890 -215572268 + AluJo SINE Alu 1 301 -11 782 199 34 28 chr3 2465071 2465247 -215571911 + MER5B DNA MER1_type 2 178 0 211 333 121 0 chr3 2466190 2466355 -215570803 + L2 LINE L2 2864 3048 -224 1912 149 0 17 chr3 2466536 2466831 -215570327 - AluJo SINE Alu -22 290 1 711 153 0 8 chr3 2466933 2467051 -215570107 - L1ME1 LINE L1 -5 6161 6045 319 194 124 5 chr3 2467088 2467231 -215569927 - MIR SINE MIR -27 235 13 2298 154 3 16 chr3 2467783 2468154 -215569004 - MER47A DNA MER2_type 0 366 1 1317 219 108 23 chr3 2468913 2469302 -215567856 + MLT1C LTR MaLR 1 422 -45 1826 102 31 0 chr3 2469341 2469596 -215567562 + AluSc SINE Alu 42 304 -5 230 132 26 0 chr3 2469605 2469643 -215567515 + MLT1B LTR MaLR 352 390 0 2871 139 7 16 chr3 2469885 2470325 -215566833 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 2470916 2471225 -215565933 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 2471341 2471493 -215565665 + L1MC5 LINE L1 7027 7178 -801 1826 153 0 14 chr3 2471493 2471780 -215565378 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 2471783 2471807 -215565351 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 2471807 2471877 -215565281 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 2472046 2472087 -215565071 + (CA)n Simple_repeat Simple_repeat 2 42 0 425 217 43 122 chr3 2472096 2472237 -215564921 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 2472237 2472815 -215564343 + L1PA7 LINE L1 5579 6154 0 425 217 43 122 chr3 2472815 2472827 -215564331 + L1MC5 LINE L1 7460 7471 -490 2212 129 0 0 chr3 2472827 2473138 -215564020 + AluSx SINE Alu 1 311 -1 425 217 43 122 chr3 2473138 2473213 -215563945 + L1MC5 LINE L1 7471 7521 -440 1520 213 216 17 chr3 2473241 2473649 -215563509 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 2473687 2473982 -215563176 - L1MCa LINE L1 -4387 1995 1698 * 11622 209 48 23 chr3 2473978 2474604 -215562554 - L1MD1 LINE L1 -1 6635 6027 2175 125 0 0 chr3 2474604 2474916 -215562242 - AluSx SINE Alu 0 312 1 11622 209 48 23 chr3 2474916 2480327 -215556831 - L1MD1 LINE L1 -609 6027 202 1440 171 0 0 chr3 2480332 2480549 -215556609 - AluJb SINE Alu -30 282 66 603 259 63 0 chr3 2480555 2480698 -215556460 - L1MD1 LINE L1 -6358 182 31 1680 235 66 84 chr3 2480727 2481197 -215555961 - L1MCa LINE L1 -4727 1657 1180 1718 183 3 25 chr3 2481197 2481514 -215555644 - AluJb SINE Alu -2 310 1 1680 235 66 84 chr3 2481514 2481548 -215555610 - L1MCa LINE L1 -5204 1180 1147 1851 183 3 3 chr3 2481548 2481859 -215555299 - AluJb SINE Alu -1 311 1 1680 235 66 84 chr3 2481859 2482262 -215554896 - L1MCa LINE L1 -5237 1147 765 227 64 0 43 chr3 2482340 2482387 -215554771 + LTR66 LTR ERVL 394 438 -172 180 77 0 0 chr3 2482388 2482414 -215554744 + (GA)n Simple_repeat Simple_repeat 2 27 0 249 33 0 0 chr3 2482463 2482493 -215554665 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1685 191 3 3 chr3 2483065 2483364 -215553794 - AluJo SINE Alu -13 299 1 198 0 0 0 chr3 2483365 2483387 -215553771 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 2483387 2483409 -215553749 + AT_rich Low_complexity Low_complexity 1 22 0 475 188 11 152 chr3 2483690 2483903 -215553255 + L1MC5 LINE L1 7545 7712 -249 1715 168 45 3 chr3 2483903 2484189 -215552969 - AluJb SINE Alu -14 298 1 475 188 11 152 chr3 2484189 2484252 -215552906 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 2484295 2484597 -215552561 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 2484774 2484924 -215552234 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 2485726 2485818 -215551340 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 2485830 2485971 -215551187 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 2487622 2487867 -215549291 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 2487950 2488052 -215549106 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 2488360 2488384 -215548774 + AT_rich Low_complexity Low_complexity 1 24 0 1895 143 61 3 chr3 2489477 2489770 -215547388 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 2490360 2490534 -215546624 - MIR SINE MIR -12 250 48 5246 56 0 0 chr3 2490549 2491156 -215546002 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 2491308 2491438 -215545720 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 2492017 2492288 -215544870 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 2492292 2492540 -215544618 + L3 LINE CR1 605 877 -700 236 315 65 0 chr3 2492598 2492706 -215544452 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 2492816 2493035 -215544123 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 2493071 2493573 -215543585 + L3 LINE CR1 1019 1527 -50 2124 105 3 24 chr3 2494207 2494523 -215542635 + AluSp SINE Alu 1 310 0 194 227 0 23 chr3 2494578 2494622 -215542536 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 2495116 2495418 -215541740 - AluJb SINE Alu -10 302 2 2109 130 0 13 chr3 2496105 2496420 -215540738 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr3 2496817 2496845 -215540313 + (CA)n Simple_repeat Simple_repeat 2 29 0 393 282 87 28 chr3 2497700 2497952 -215539206 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 2497962 2498043 -215539115 + L1MC/D LINE L1 5428 5508 -734 832 176 0 0 chr3 2498277 2498408 -215538750 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 2498420 2498721 -215538437 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 2498751 2498938 -215538220 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 2501551 2501586 -215535572 + AT_rich Low_complexity Low_complexity 1 35 0 1909 150 0 20 chr3 2502333 2502633 -215534525 + AluSx SINE Alu 1 294 -18 1980 125 59 0 chr3 2503252 2503539 -215533619 + AluSx SINE Alu 1 304 -8 230 132 26 0 chr3 2503548 2503586 -215533572 + MLT1B LTR MaLR 352 390 0 2855 141 7 16 chr3 2503828 2504268 -215532890 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 2504859 2505168 -215531990 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 2505284 2505436 -215531722 + L1MC5 LINE L1 7027 7178 -801 1839 150 0 14 chr3 2505436 2505723 -215531435 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 2505726 2505750 -215531408 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 2505750 2505820 -215531338 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 2505989 2506030 -215531128 + (CA)n Simple_repeat Simple_repeat 2 42 0 431 218 44 118 chr3 2506039 2506180 -215530978 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 2506180 2506758 -215530400 + L1PA7 LINE L1 5579 6154 0 431 218 44 118 chr3 2506758 2506769 -215530389 + L1MC5 LINE L1 7460 7470 -491 2227 129 0 0 chr3 2506769 2507080 -215530078 + AluSx SINE Alu 1 311 -1 431 218 44 118 chr3 2507080 2507155 -215530003 + L1MC5 LINE L1 7470 7521 -440 1520 213 216 17 chr3 2507183 2507591 -215529567 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 2507629 2507924 -215529234 - L1MCa LINE L1 -4387 2039 1742 * 5045 189 45 19 chr3 2507920 2508547 -215528611 - L1MD1 LINE L1 -1 6241 5632 2122 125 0 3 chr3 2508547 2508858 -215528300 - AluSx SINE Alu -2 310 1 5045 189 45 19 chr3 2508858 2510135 -215527023 - L1MD1 LINE L1 -610 5632 4288 11309 44 3 0 chr3 2510301 2512379 -215524779 + L1PA6 LINE L1 4066 6150 -4 1402 143 33 8 chr3 2512379 2512624 -215524534 + MER45B DNA AcHobo 790 1040 0 383 289 0 10 chr3 2512639 2512736 -215524422 - MER117 DNA MER1_type -34 163 68 300 352 80 12 chr3 2513191 2513353 -215523805 - MIR SINE MIR -56 206 34 781 165 0 24 chr3 2513511 2513629 -215523529 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 2513629 2513670 -215523488 + (CA)n Simple_repeat Simple_repeat 2 42 0 630 246 89 25 chr3 2514530 2514611 -215522547 + MER33 DNA MER1_type 1 75 -2510 2061 173 42 58 chr3 2514611 2515061 -215522097 + LTR47B LTR ERVL 1 443 0 630 246 89 25 chr3 2515061 2515194 -215521964 + MER33 DNA MER1_type 75 234 -2351 432 0 0 0 chr3 2515194 2515242 -215521916 + (TA)n Simple_repeat Simple_repeat 2 49 0 630 246 89 25 chr3 2515242 2515262 -215521896 + MER33 DNA MER1_type 234 251 -73 8153 6 0 0 chr3 2515262 2516336 -215520822 - L1HS LINE L1 -16 6139 5066 2231 26 0 8 chr3 2516332 2516596 -215520562 + L1P LINE L1 3581 3842 -2304 * 1344 221 3 3 chr3 2516738 2517023 -215520135 - AluSp SINE Alu -28 285 1 396 185 0 0 chr3 2518507 2518599 -215518559 - Charlie5 DNA MER1_type -11 2601 2510 14380 45 1 3 chr3 2518600 2520361 -215516797 - L1P LINE L1 -1075 5071 3316 2604 165 34 25 chr3 2520505 2521118 -215516040 - pTR5 LTR ERV1 -1075 1363 745 230 152 0 0 chr3 2521121 2521154 -215516004 - Alu SINE Alu -266 34 2 635 261 159 8 chr3 2521188 2521445 -215515713 - L1ME3A LINE L1 -191 5979 5684 1242 124 10 38 chr3 2521708 2521917 -215515241 + AluSg/x SINE Alu 105 307 -5 1883 128 25 4 chr3 2523197 2523471 -215513687 - AluSc SINE Alu -29 280 1 6868 201 60 9 chr3 2524076 2526093 -215511065 + L1MB2 LINE L1 3678 5785 -386 2003 127 43 0 chr3 2526086 2526409 -215510749 - L1P LINE L1 -989 5157 4821 * 2844 67 6 11 chr3 2526409 2526766 -215510392 + L1PA10 LINE L1 5808 6164 -4 198 71 0 0 chr3 2527903 2527931 -215509227 + (CA)n Simple_repeat Simple_repeat 2 29 0 2122 132 90 3 chr3 2527932 2528297 -215508861 + L1MB2 LINE L1 5773 6169 -2 387 209 9 67 chr3 2528936 2529012 -215508146 + MIR SINE MIR 30 100 -162 2036 165 45 8 chr3 2529012 2529364 -215507794 + MER47A DNA MER2_type 2 366 0 387 209 9 67 chr3 2529364 2529392 -215507766 + MIR SINE MIR 100 128 -134 2901 94 20 5 chr3 2529487 2529879 -215507279 + MLT2A1 LTR ERVL 1 398 -46 26 64 0 0 chr3 2529879 2529926 -215507232 + AT_rich Low_complexity Low_complexity 1 47 0 232 154 0 19 chr3 2529926 2529978 -215507180 + LTR66 LTR ERVL 404 454 -156 * 249 62 167 21 chr3 2529948 2529996 -215507162 + MLT2A1 LTR ERVL 399 453 0 44384 65 17 11 chr3 2529996 2532637 -215504521 + HERVL-A1-A1 LTR ERVL 1 2623 -3031 2982 6 0 0 chr3 2532637 2532955 -215504203 - AluYb8 SINE Alu 0 318 1 44384 65 17 11 chr3 2532955 2535929 -215501229 + HERVL-A1-A1 LTR ERVL 2623 5654 0 2656 85 66 33 chr3 2535929 2536324 -215500834 + MLT2A1 LTR ERVL 1 412 -32 248 0 31 0 chr3 2536324 2536356 -215500802 + (TA)n Simple_repeat Simple_repeat 2 34 0 2656 85 66 33 chr3 2536356 2536383 -215500775 + MLT2A1 LTR ERVL 412 437 -7 243 214 71 0 chr3 2536847 2536903 -215500255 - MER101 LTR ERV1 -146 328 269 828 234 100 13 chr3 2537174 2537413 -215499745 + MIR SINE MIR 3 262 0 181 378 41 10 chr3 2538010 2538108 -215499050 + MIR3 SINE MIR 11 111 -97 225 170 64 0 chr3 2538240 2538287 -215498871 + CT-rich Low_complexity Low_complexity 4 53 0 258 198 143 66 chr3 2538443 2538534 -215498624 - Charlie8 DNA MER1_type -2319 98 1 208 191 117 117 chr3 2539534 2539628 -215497530 - MIR3 SINE MIR -15 193 100 585 249 127 5 chr3 2540721 2540926 -215496232 + MIR SINE MIR 20 249 -13 540 239 57 19 chr3 2541094 2541253 -215495905 - MIR SINE MIR -84 178 14 588 311 31 40 chr3 2542226 2542448 -215494710 - MIR SINE MIR -15 247 28 243 294 9 64 chr3 2542521 2542630 -215494528 + L2 LINE L2 3193 3295 -18 579 271 94 10 chr3 2543118 2543310 -215493848 + MER3 DNA MER1_type 2 209 0 317 262 82 47 chr3 2543321 2543478 -215493680 - MER5A DNA MER1_type -10 179 7 190 359 47 0 chr3 2543672 2543736 -215493422 + L2 LINE L2 3186 3252 -20 215 286 16 0 chr3 2544148 2544211 -215492947 + L2 LINE L2 3209 3272 0 189 0 0 0 chr3 2544415 2544436 -215492722 + (CAA)n Simple_repeat Simple_repeat 1 21 0 229 356 59 0 chr3 2544546 2544647 -215492511 + MIR SINE MIR 107 213 -49 2142 148 22 63 chr3 2544724 2545170 -215491988 + MLT1C LTR MaLR 36 463 -4 1754 166 28 7 chr3 2545202 2545491 -215491667 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr3 2546772 2546796 -215490362 + AT_rich Low_complexity Low_complexity 1 24 0 658 191 0 48 chr3 2547414 2547515 -215489643 + MLT2B2 LTR ERVL 376 469 -46 180 0 0 0 chr3 2547515 2547535 -215489623 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 658 191 0 48 chr3 2547535 2547580 -215489578 + MLT2B2 LTR ERVL 469 515 0 355 200 45 3 chr3 2549159 2549277 -215487881 - MER63A DNA MER1_type -37 173 14 373 280 0 51 chr3 2549461 2549544 -215487614 - LTR33 LTR ERVL -7 514 441 1115 208 76 90 chr3 2549544 2549976 -215487182 - MSTC LTR MaLR -2 426 1 373 280 0 51 chr3 2549976 2550049 -215487109 - LTR33 LTR ERVL -80 441 366 527 203 23 30 chr3 2550051 2550184 -215486974 - LTR33 LTR ERVL -389 132 1 258 371 44 46 chr3 2550196 2550584 -215486574 - L2 LINE L2 -558 2756 2370 350 233 56 0 chr3 2550614 2550704 -215486454 + LTR33 LTR ERVL 163 257 -264 258 301 102 18 chr3 2550797 2550963 -215486195 - L2 LINE L2 -1003 2311 2132 189 0 0 0 chr3 2551655 2551676 -215485482 + (T)n Simple_repeat Simple_repeat 1 21 0 548 310 144 53 chr3 2551983 2552399 -215484759 + L2 LINE L2 2857 3310 -3 431 305 147 10 chr3 2552402 2552599 -215484559 - MIR SINE MIR -19 243 20 236 333 66 105 chr3 2553014 2553242 -215483916 - L2 LINE L2 -6 3266 3048 308 242 121 0 chr3 2553269 2553360 -215483798 + MIR SINE MIR 73 174 -88 962 204 0 17 chr3 2553753 2553929 -215483229 - AluJb SINE Alu -3 309 137 204 300 0 0 chr3 2554093 2554143 -215483015 - MIR SINE MIR -14 248 199 417 277 97 35 chr3 2554631 2554823 -215482335 - MIR SINE MIR -12 250 57 2099 122 0 3 chr3 2555046 2555342 -215481816 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 2556025 2556047 -215481111 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 533 296 69 0 chr3 2556072 2556231 -215480927 + MIR SINE MIR 76 245 -17 749 177 62 77 chr3 2558288 2558497 -215478661 - MER20 DNA MER1_type -13 206 1 255 255 0 0 chr3 2558632 2558683 -215478475 + L2 LINE L2 3263 3313 0 210 338 0 26 chr3 2560222 2560299 -215476859 - MIR SINE MIR -55 153 79 22 35 0 0 chr3 2560974 2561003 -215476155 + AT_rich Low_complexity Low_complexity 1 29 0 204 308 12 47 chr3 2564076 2564245 -215472913 + C-rich Low_complexity Low_complexity 5 167 0 231 88 0 0 chr3 2564656 2564690 -215472468 + (GGA)n Simple_repeat Simple_repeat 3 36 0 21 57 0 0 chr3 2565171 2565206 -215471952 + GC_rich Low_complexity Low_complexity 1 35 0 791 243 56 42 chr3 2566716 2566930 -215470228 + MIR SINE MIR 28 244 -18 207 0 0 0 chr3 2568280 2568303 -215468855 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 447 283 9 9 chr3 2568401 2568507 -215468651 - MER81 DNA DNA 0 114 9 2755 105 11 3 chr3 2568668 2569029 -215468129 - THE1B LTR MaLR 0 364 1 271 236 0 18 chr3 2569030 2569085 -215468073 - MIR3 SINE MIR -46 162 109 358 192 0 14 chr3 2569252 2569325 -215467833 - L1ME4a LINE L1 -249 5872 5801 22 0 0 0 chr3 2569512 2569534 -215467624 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 62 0 chr3 2569713 2569826 -215467332 + MIR SINE MIR 1 120 -142 425 152 0 0 chr3 2569874 2569940 -215467218 + L1PA16 LINE L1 6095 6160 -6 4403 152 19 32 chr3 2569949 2570098 -215467060 + L1MB3 LINE L1 5386 5536 -647 2625 112 67 45 chr3 2570098 2570517 -215466641 + MSTA LTR MaLR 1 428 0 4403 152 19 32 chr3 2570517 2570787 -215466371 + L1MB3 LINE L1 5536 5808 -375 2506 111 36 30 chr3 2570787 2571149 -215466009 - THE1B LTR MaLR 0 364 1 4403 152 19 32 chr3 2571149 2571537 -215465621 + L1MB3 LINE L1 5808 6183 0 669 245 164 45 chr3 2571583 2571942 -215465216 - MLT1J1 LTR MaLR 0 446 45 377 323 0 0 chr3 2572967 2573060 -215464098 - MIR3 SINE MIR -7 201 109 291 274 16 0 chr3 2573114 2573176 -215463982 - MIR SINE MIR -108 100 38 1565 158 36 37 chr3 2573258 2573734 -215463424 + L1M2 LINE L1 5088 5562 -729 226 180 0 20 chr3 2573779 2573829 -215463329 + L1MCa LINE L1 2016 2064 -4362 * 278 261 23 0 chr3 2573816 2573904 -215463254 + L1MC4 LINE L1 6614 6703 -1339 1043 141 29 0 chr3 2574098 2574268 -215462890 - MLT1C LTR MaLR -285 182 8 1692 76 5 0 chr3 2574328 2574538 -215462620 + AluY SINE Alu 86 296 -15 12183 120 19 44 chr3 2574562 2574706 -215462452 + Tigger1 DNA MER2_type 1 147 -2271 1194 107 60 0 chr3 2574706 2574874 -215462284 - L1PB3 LINE L1 -1 6153 5976 12183 120 19 44 chr3 2574874 2575468 -215461690 + Tigger1 DNA MER2_type 147 755 -1663 2076 123 23 13 chr3 2575468 2575740 -215461418 + AluSq SINE Alu 1 278 -35 1113 71 24 0 chr3 2575740 2575908 -215461250 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 2076 123 23 13 chr3 2575908 2575945 -215461213 + AluSq SINE Alu 278 313 0 12183 120 19 44 chr3 2575945 2577190 -215459968 + Tigger1 DNA MER2_type 755 1934 -484 2387 150 20 93 chr3 2577190 2577683 -215459475 - LTR32 LTR ERVL 0 471 15 3196 140 10 6 chr3 2577683 2578169 -215458989 + Tigger1 DNA MER2_type 1930 2417 -1 435 274 42 53 chr3 2578269 2578459 -215458699 - MIR SINE MIR -36 226 39 299 452 25 0 chr3 2578652 2578809 -215458349 - L2 LINE L2 -12 3260 3100 * 616 292 31 5 chr3 2578807 2578999 -215458159 - MIR SINE MIR -1 261 65 343 304 9 9 chr3 2579202 2579317 -215457841 + MIR SINE MIR 137 251 -11 240 289 22 44 chr3 2579613 2579703 -215457455 + L3 LINE CR1 1488 1575 -2 466 305 72 6 chr3 2580985 2581152 -215456006 + MIR SINE MIR 37 214 -48 859 73 47 80 chr3 2581752 2581767 -215455391 + L1MA5A LINE L1 6153 6167 -130 1996 148 40 35 chr3 2581767 2582140 -215455018 + THE1C LTR MaLR 1 375 0 859 73 47 80 chr3 2582140 2582248 -215454910 + L1MA5A LINE L1 6167 6273 -24 495 105 53 0 chr3 2582248 2582274 -215454884 + MADE1 DNA Mariner 1 24 -56 2284 88 19 10 chr3 2582274 2582582 -215454576 - AluY SINE Alu 0 311 1 495 105 53 0 chr3 2582582 2582631 -215454527 + MADE1 DNA Mariner 24 80 0 859 73 47 80 chr3 2582631 2582656 -215454502 + L1MA5A LINE L1 6273 6297 0 1264 195 20 28 chr3 2583370 2583701 -215453457 - MLT2B3 LTR ERVL 0 554 231 1539 155 39 0 chr3 2583713 2583971 -215453187 - MLT2A2 LTR ERVL -185 268 1 832 287 108 25 chr3 2584065 2584379 -215452779 + MER102b DNA MER1_type 2 341 0 205 288 82 0 chr3 2584481 2584554 -215452604 + L2 LINE L2 3235 3313 0 239 281 67 11 chr3 2584562 2584651 -215452507 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 2585879 2586070 -215451088 - MIR SINE MIR -43 219 18 321 272 25 0 chr3 2586181 2586262 -215450896 - MER81 DNA DNA -5 109 27 280 184 0 20 chr3 2586285 2586334 -215450824 - MER81 DNA DNA -66 48 1 2554 124 5 22 chr3 2586513 2586883 -215450275 + THE1B LTR MaLR 1 364 0 335 320 49 0 chr3 2587141 2587263 -215449895 - MIR SINE MIR -32 230 103 405 263 75 0 chr3 2588190 2588323 -215448835 + LTR67 LTR ERVL 403 545 -12 1748 182 0 10 chr3 2588376 2588684 -215448474 - AluSx SINE Alu -7 305 1 181 263 288 12 chr3 2588770 2588850 -215448308 - MIR SINE MIR -63 145 44 2365 76 0 22 chr3 2588941 2589258 -215447900 + AluY SINE Alu 1 310 -1 321 318 77 43 chr3 2589594 2589827 -215447331 + MIR SINE MIR 5 245 -17 468 193 0 0 chr3 2590389 2590498 -215446660 + (TA)n Simple_repeat Simple_repeat 2 110 0 314 192 0 26 chr3 2590575 2590653 -215446505 + (CATA)n Simple_repeat Simple_repeat 2 77 0 261 276 35 0 chr3 2590653 2590740 -215446418 + L1MC4 LINE L1 6614 6703 -1339 231 272 0 22 chr3 2590732 2590824 -215446334 - L1MC4 LINE L1 -1339 6703 6614 * 357 208 0 0 chr3 2590825 2590902 -215446256 + (TA)n Simple_repeat Simple_repeat 1 77 0 316 283 0 22 chr3 2590902 2590994 -215446164 - L1MC4 LINE L1 -1339 6703 6614 239 267 47 0 chr3 2591004 2591090 -215446068 - L1MC4 LINE L1 -1339 6703 6614 435 211 0 0 chr3 2591091 2591186 -215445972 + (TA)n Simple_repeat Simple_repeat 2 96 0 229 261 0 22 chr3 2591186 2591278 -215445880 - L1MC4 LINE L1 -1339 6703 6614 252 214 0 0 chr3 2591279 2591335 -215445823 + (TA)n Simple_repeat Simple_repeat 1 56 0 192 97 0 0 chr3 2592013 2592044 -215445114 + (CA)n Simple_repeat Simple_repeat 1 31 0 431 143 0 39 chr3 2592217 2592294 -215444864 + AluY SINE Alu 208 281 -30 452 308 104 11 chr3 2593194 2593454 -215443704 - L2 LINE L2 0 3313 3030 269 238 179 12 chr3 2594080 2594164 -215442994 - MER5A DNA MER1_type -83 106 9 550 250 57 6 chr3 2594180 2594355 -215442803 - Charlie2 DNA MER1_type 0 2862 2679 1208 205 8 63 chr3 2594355 2594735 -215442423 - THE1C LTR MaLR 0 375 17 216 0 0 0 chr3 2596385 2596409 -215440749 + (TA)n Simple_repeat Simple_repeat 2 25 0 682 279 181 85 chr3 2598253 2599217 -215437941 + L3 LINE CR1 431 1487 -90 213 239 0 22 chr3 2599236 2599282 -215437876 + L2 LINE L2 3210 3254 -18 226 351 85 0 chr3 2599352 2599446 -215437712 + L2 LINE L2 3169 3270 -2 2587 110 11 8 chr3 2599977 2600331 -215436827 - THE1A LTR MaLR 0 355 1 5045 138 45 13 chr3 2600345 2601218 -215435940 + MER4D LTR ERV1 1 463 -2 183 42 0 0 chr3 2601315 2601339 -215435819 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 390 265 121 8 chr3 2601354 2601486 -215435672 - MIR SINE MIR -12 250 104 256 336 68 20 chr3 2601763 2601909 -215435249 - MIR3 SINE MIR -22 186 34 387 292 71 60 chr3 2602815 2602983 -215434175 + MIR3 SINE MIR 17 186 -22 432 204 60 156 chr3 2603613 2603882 -215433276 - MER112 DNA MER1_type 0 260 18 1030 258 28 60 chr3 2603884 2604237 -215432921 - LTR16A LTR ERVL -6 444 103 441 195 12 0 chr3 2604374 2604456 -215432702 - MER20 DNA MER1_type 0 219 137 1277 215 93 31 chr3 2604458 2604812 -215432346 + LTR52 LTR ERVL 4 379 -42 671 183 56 7 chr3 2604805 2604947 -215432211 - MER20 DNA MER1_type -65 154 6 * 2126 135 0 0 chr3 2605705 2606001 -215431157 - AluSg SINE Alu -14 296 1 1861 168 3 0 chr3 2606011 2606302 -215430856 - AluJb SINE Alu -20 292 1 425 289 0 18 chr3 2606666 2606780 -215430378 - MIR SINE MIR -61 147 36 283 87 22 0 chr3 2606990 2607036 -215430122 - L1MB8 LINE L1 0 6178 6132 1227 126 0 6 chr3 2607038 2607205 -215429953 - AluSg/x SINE Alu -16 296 131 3633 201 49 27 chr3 2607210 2607607 -215429551 - L1MB7 LINE L1 -37 6147 5760 1678 141 11 67 chr3 2607607 2607755 -215429403 - AluJb SINE Alu -34 278 152 2312 91 7 0 chr3 2607755 2608051 -215429107 - AluY SINE Alu -13 298 1 1678 141 11 67 chr3 2608051 2608186 -215428972 - AluJb SINE Alu -160 152 11 3633 201 49 27 chr3 2608186 2608688 -215428470 - L1MB7 LINE L1 -424 5760 5227 22 0 0 0 chr3 2608911 2608933 -215428225 + AT_rich Low_complexity Low_complexity 1 22 0 1272 169 132 33 chr3 2609380 2609652 -215427506 + AluJb SINE Alu 1 299 -13 246 289 33 22 chr3 2609706 2609796 -215427362 + MER94 DNA DNA 44 134 0 4526 28 4 0 chr3 2610599 2611101 -215426057 + L1PA4 LINE L1 5651 6154 -1 323 263 61 44 chr3 2612120 2612234 -215424924 - MIR3 SINE MIR -46 162 47 322 293 95 0 chr3 2612364 2612480 -215424678 + MIR SINE MIR 65 191 -71 345 317 0 0 chr3 2612618 2612700 -215424458 + L2 LINE L2 3232 3313 0 219 293 89 57 chr3 2612838 2612961 -215424197 + MIR3 SINE MIR 28 154 -54 773 233 41 116 chr3 2612961 2613305 -215423853 - MER102b DNA MER1_type -22 319 2 189 0 0 0 chr3 2614202 2614223 -215422935 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 627 242 56 25 chr3 2614240 2614401 -215422757 + MIR SINE MIR 24 189 -73 14488 37 1 3 chr3 2614405 2616150 -215421008 - L1PA2 LINE L1 -1444 4702 2961 8225 22 0 0 chr3 2616150 2617615 -215419543 + L1PA2 LINE L1 4691 6155 0 369 319 35 0 chr3 2617820 2617933 -215419225 - L2 LINE L2 -1 3271 3155 443 275 126 33 chr3 2618070 2618252 -215418906 - MIR SINE MIR -6 256 58 1971 139 85 20 chr3 2619141 2619493 -215417665 + THE1C LTR MaLR 1 375 0 2647 24 0 0 chr3 2619604 2619901 -215417257 + AluYb8 SINE Alu 19 315 -3 1132 246 113 19 chr3 2620010 2620380 -215416778 + MLT1E2 LTR MaLR 1 405 -221 921 241 0 5 chr3 2620498 2620689 -215416469 + MLT1D LTR MaLR 316 505 0 231 250 0 0 chr3 2620693 2620741 -215416417 - MIR SINE MIR -92 116 69 437 259 64 64 chr3 2620784 2621050 -215416108 + L2 LINE L2 3047 3312 -1 286 226 250 32 chr3 2621106 2621230 -215415928 - MIR3 SINE MIR -25 183 33 795 183 0 0 chr3 2621664 2621784 -215415374 - FLAM_A SINE Alu -13 120 1 299 348 17 8 chr3 2622767 2622885 -215414273 + MIR3 SINE MIR 41 159 -49 661 194 12 0 chr3 2622958 2623118 -215414040 + CT-rich Low_complexity Low_complexity 1 162 0 1814 193 0 0 chr3 2623129 2623424 -215413734 - AluJo SINE Alu -17 295 1 245 268 18 0 chr3 2623534 2623590 -215413568 + MER102b DNA MER1_type 285 341 0 1311 219 15 8 chr3 2623914 2624179 -215412979 + MLT1H LTR MaLR 8 274 -275 1942 141 18 0 chr3 2624179 2624463 -215412695 + AluSx SINE Alu 9 297 -15 1252 198 108 35 chr3 2624558 2624939 -215412219 + MLT2B1 LTR ERVL 1 371 -43 2730 96 19 16 chr3 2624939 2625302 -215411856 - THE1B LTR MaLR 0 364 1 1252 198 108 35 chr3 2625302 2625350 -215411808 + MLT2B1 LTR ERVL 371 414 0 272 187 53 67 chr3 2625358 2625433 -215411725 - MIR SINE MIR -104 104 31 248 265 81 37 chr3 2627679 2627815 -215409343 - MER20B DNA MER1_type -147 636 495 311 254 9 118 chr3 2627920 2628030 -215409128 - MER81 DNA DNA -16 98 1 2194 144 57 36 chr3 2628621 2629009 -215408149 + MSTD LTR MaLR 1 396 0 2482 63 0 3 chr3 2629115 2629436 -215407722 - AluY SINE Alu 0 330 11 439 195 80 9 chr3 2631323 2631436 -215405722 - LTR16C LTR ERVL 0 491 371 534 172 57 146 chr3 2631452 2631644 -215405514 + MER21B LTR ERV1 13 187 -676 1238 190 0 5 chr3 2631695 2631911 -215405247 - AluJo SINE Alu -14 298 84 1501 225 35 52 chr3 2631949 2632353 -215404805 + MER21B LTR ERV1 360 756 -107 918 236 90 55 chr3 2632373 2632716 -215404442 - LTR16C LTR ERVL -120 371 17 2505 134 59 20 chr3 2632767 2633176 -215403982 + MSTA LTR MaLR 4 428 0 255 133 0 0 chr3 2633510 2633555 -215403603 + (TG)n Simple_repeat Simple_repeat 1 45 0 2193 128 0 0 chr3 2635319 2635616 -215401542 - AluSx SINE Alu -10 302 6 654 309 94 62 chr3 2635806 2635905 -215401253 - L2 LINE L2 -49 3264 3170 2947 204 65 24 chr3 2635905 2636531 -215400627 - MER82 DNA MER2_type -1 652 1 654 309 94 62 chr3 2636531 2637321 -215399837 - L2 LINE L2 -143 3170 2348 1416 279 22 16 chr3 2637321 2637690 -215399468 + MLT1G1 LTR MaLR 16 386 -209 746 312 69 52 chr3 2637812 2638273 -215398885 - L2 LINE L2 -952 2362 1894 267 337 163 0 chr3 2638352 2638518 -215398640 - MIR SINE MIR -1 261 69 304 197 53 92 chr3 2638584 2638736 -215398422 + L1MC5 LINE L1 7650 7795 -166 271 270 36 36 chr3 2639930 2640041 -215397117 + L2 LINE L2 3203 3313 0 1557 239 59 11 chr3 2641058 2641430 -215395728 + MLT1B LTR MaLR 1 390 0 189 49 24 49 chr3 2641553 2641594 -215395564 + (TATAA)n Simple_repeat Simple_repeat 3 42 0 987 196 49 85 chr3 2641638 2641944 -215395214 + MLT1C LTR MaLR 1 295 -172 1894 199 26 46 chr3 2641959 2642417 -215394741 - LTR2 LTR ERV1 0 449 1 508 62 0 0 chr3 2642419 2642483 -215394675 + MADE1 DNA Mariner 17 80 0 574 255 16 10 chr3 2642492 2642671 -215394487 + MLT1C LTR MaLR 323 467 0 439 244 15 69 chr3 2642925 2643056 -215394102 - MIR SINE MIR -92 170 47 2784 229 21 57 chr3 2643369 2644086 -215393072 + LTR8 LTR ERV1 1 691 0 272 195 13 39 chr3 2644340 2644417 -215392741 + A-rich Low_complexity Low_complexity 4 78 0 347 265 71 0 chr3 2644675 2644773 -215392385 + MIR3 SINE MIR 81 185 -23 1500 133 0 0 chr3 2645401 2645626 -215391532 + L1P LINE L1 4890 5114 -1032 220 314 119 22 chr3 2645964 2646149 -215391009 + MIR SINE MIR 48 250 -12 206 273 0 0 chr3 2646116 2646160 -215390998 + L2 LINE L2 3263 3306 -7 * 6796 90 7 6 chr3 2647518 2648582 -215388576 + L1PA12 LINE L1 5104 6168 0 500 297 106 29 chr3 2648772 2648921 -215388237 + L1ME4a LINE L1 5540 5676 -445 2108 100 7 0 chr3 2648921 2649230 -215387928 - AluSx SINE Alu 0 311 1 500 297 106 29 chr3 2649230 2649419 -215387739 + L1ME4a LINE L1 5676 5905 -216 21 57 0 0 chr3 2649494 2649529 -215387629 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 2650202 2650223 -215386935 + AT_rich Low_complexity Low_complexity 1 21 0 1715 126 4 12 chr3 2650270 2650525 -215386633 + AluJb SINE Alu 17 269 -43 255 214 121 79 chr3 2650535 2650675 -215386483 + MIR SINE MIR 66 211 -51 2579 139 10 5 chr3 2650989 2651377 -215385781 + MLT1B LTR MaLR 1 390 0 912 231 62 5 chr3 2652027 2652235 -215384923 + MIR SINE MIR 33 252 -10 333 318 9 0 chr3 2652359 2652466 -215384692 - MIR SINE MIR -1 261 154 869 296 33 36 chr3 2652467 2652798 -215384360 - MLT1I LTR MaLR 0 409 80 218 284 65 110 chr3 2652839 2652994 -215384164 - MIR SINE MIR -105 157 10 1729 206 116 12 chr3 2653034 2653457 -215383701 + MLT1C LTR MaLR 1 467 0 296 243 71 48 chr3 2653536 2653678 -215383480 + L2 LINE L2 3011 3268 -4 312 288 135 24 chr3 2653902 2654072 -215383086 - LTR16A LTR ERVL -2 448 260 216 270 16 32 chr3 2654665 2654728 -215382430 + L2 LINE L2 3252 3313 0 653 270 76 45 chr3 2655230 2655585 -215381573 + MLT1K LTR MaLR 170 535 -53 5842 157 22 24 chr3 2655590 2656667 -215380491 - L1MA9 LINE L1 0 6312 5237 298 189 0 0 chr3 2656669 2656722 -215380436 + MLT1K LTR MaLR 525 577 -11 778 250 81 21 chr3 2657464 2657700 -215379458 - MIR SINE MIR -11 251 2 21 36 0 0 chr3 2658123 2658151 -215379007 + AT_rich Low_complexity Low_complexity 1 28 0 210 259 134 9 chr3 2658838 2658950 -215378208 + MIR3 SINE MIR 78 203 -5 2585 23 3 10 chr3 2659226 2659525 -215377633 + AluY SINE Alu 1 297 -14 1432 267 75 50 chr3 2659660 2660262 -215376896 + MER21B LTR ERV1 98 714 -149 666 303 0 15 chr3 2660413 2660611 -215376547 - MIR SINE MIR -49 213 19 404 294 9 9 chr3 2660636 2660745 -215376413 + MIR SINE MIR 154 262 0 597 260 25 69 chr3 2662012 2662064 -215375094 - L2 LINE L2 0 3313 3260 1645 145 0 11 chr3 2662064 2662326 -215374832 - AluJo SINE Alu -3 309 51 597 260 25 69 chr3 2662326 2662477 -215374681 - L2 LINE L2 -53 3260 3119 667 282 29 67 chr3 2662513 2662857 -215374301 - L2 LINE L2 -343 2971 2641 294 281 65 51 chr3 2662930 2663095 -215374063 + MIR3 SINE MIR 34 200 -8 4488 176 49 59 chr3 2663897 2664944 -215372214 + L1MA9 LINE L1 5211 6274 -38 256 100 80 0 chr3 2664980 2665030 -215372128 + L1MA9 LINE L1 6221 6274 -38 2116 178 117 42 chr3 2665164 2665768 -215371390 - MLT1E2 LTR MaLR 0 626 1 392 246 111 8 chr3 2665800 2665926 -215371232 - LTR16C LTR ERVL 0 491 353 217 243 63 12 chr3 2666090 2666175 -215370983 - MIR SINE MIR -66 142 70 301 231 106 48 chr3 2666586 2666690 -215370468 + MIR SINE MIR 22 131 -131 442 240 68 48 chr3 2666756 2666903 -215370255 - MIR3 SINE MIR -63 145 15 709 297 122 30 chr3 2667424 2667899 -215369259 - L2 LINE L2 0 3313 2763 553 217 35 0 chr3 2668769 2668884 -215368274 - MER5A DNA MER1_type -22 167 49 1032 62 0 0 chr3 2668884 2669029 -215368129 + (ATG)n Simple_repeat Simple_repeat 1 145 0 188 347 97 35 chr3 2669029 2669059 -215368099 + MER5B DNA MER1_type 150 177 -1 540 309 124 0 chr3 2669797 2670014 -215367144 - MIR SINE MIR -3 259 16 29 28 0 0 chr3 2670597 2670633 -215366525 + AT_rich Low_complexity Low_complexity 1 36 0 785 142 24 8 chr3 2671072 2671199 -215365959 - MER74B LTR ERVL -3 619 491 3951 147 31 38 chr3 2671205 2671921 -215365237 - MER50 LTR ERV1 -23 711 1 1907 202 58 32 chr3 2671924 2672355 -215364803 - MER74B LTR ERVL -126 496 55 254 306 83 0 chr3 2672652 2672760 -215364398 - MIR SINE MIR -73 189 73 328 264 60 39 chr3 2673503 2673685 -215363473 - MIR SINE MIR 0 262 77 369 0 0 0 chr3 2675244 2675285 -215361873 + (A)n Simple_repeat Simple_repeat 1 41 0 381 278 93 0 chr3 2676013 2676121 -215361037 + MIR3 SINE MIR 91 208 0 689 332 43 8 chr3 2676263 2676498 -215360660 - MIR SINE MIR 0 262 20 434 327 63 33 chr3 2677610 2677910 -215359248 + L2 LINE L2 3005 3313 0 395 321 45 0 chr3 2678108 2678242 -215358916 - L2 LINE L2 0 3272 3133 476 285 58 7 chr3 2678741 2678878 -215358280 + MIR SINE MIR 28 171 -91 23 0 0 0 chr3 2679354 2679377 -215357781 + AT_rich Low_complexity Low_complexity 1 23 0 3135 168 26 22 chr3 2679384 2680005 -215357153 - L1MB5 LINE L1 -13 6161 5539 21 36 0 0 chr3 2680193 2680221 -215356937 + AT_rich Low_complexity Low_complexity 1 28 0 3419 134 11 0 chr3 2680388 2680909 -215356249 - MER1A DNA MER1_type -2 527 1 197 222 48 63 chr3 2681395 2681458 -215355700 - L2 LINE L2 0 3313 3252 493 320 100 42 chr3 2681813 2682194 -215354964 + L2 LINE L2 2829 3231 -41 225 65 0 0 chr3 2682737 2682768 -215354390 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chr3 2683655 2683679 -215353479 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1152 309 45 44 chr3 2683807 2684335 -215352823 - MLT1K LTR MaLR -37 551 23 336 102 0 0 chr3 2684353 2684402 -215352756 + (TG)n Simple_repeat Simple_repeat 1 49 0 315 0 0 0 chr3 2684401 2684436 -215352722 + (GA)n Simple_repeat Simple_repeat 1 35 0 * 591 234 61 61 chr3 2684462 2684723 -215352435 + MLT1H LTR MaLR 40 300 -249 225 281 0 0 chr3 2684839 2684903 -215352255 + MLT1H LTR MaLR 484 547 -2 1617 176 3 24 chr3 2685561 2685891 -215351267 - AluJo SINE Alu 0 324 1 306 323 144 20 chr3 2686621 2686816 -215350342 + MIR SINE MIR 40 258 -4 217 268 0 18 chr3 2687171 2687227 -215349931 - MIR3 SINE MIR -23 185 131 307 354 0 15 chr3 2688446 2688576 -215348582 - MIR3 SINE MIR -69 139 12 314 284 21 100 chr3 2688852 2689042 -215348116 - MER102a DNA MER1_type -4 326 152 3745 150 50 17 chr3 2689106 2689824 -215347334 + Tigger2 DNA MER2_type 3 744 -1974 1509 126 16 0 chr3 2689890 2690144 -215347014 + Tigger2 DNA MER2_type 2461 2718 0 427 288 56 30 chr3 2690247 2690445 -215346713 + L3 LINE CR1 1043 1245 -332 455 221 174 35 chr3 2690658 2690830 -215346328 - MER58C DNA MER1_type -19 196 1 294 257 109 0 chr3 2690969 2691070 -215346088 + MER103 DNA DNA 9 120 -46 549 80 0 0 chr3 2691123 2691198 -215345960 + (CA)n Simple_repeat Simple_repeat 2 76 0 2333 35 11 0 chr3 2691213 2691500 -215345658 - AluY SINE Alu -21 290 1 1395 187 28 0 chr3 2692035 2692319 -215344839 - L1MA4A LINE L1 -11 6292 6001 286 332 103 23 chr3 2692454 2692668 -215344490 + MIR SINE MIR 30 260 -2 3227 160 22 2 chr3 2692951 2693490 -215343668 - MER44D DNA MER2_type 0 605 1 956 285 0 12 chr3 2693803 2694049 -215343109 - MIR SINE MIR -17 245 3 1077 168 16 16 chr3 2694049 2694239 -215342919 + AluJo SINE Alu 112 301 -11 3119 221 59 9 chr3 2694252 2695525 -215341633 + L1MB7 LINE L1 4844 6184 0 7048 132 14 18 chr3 2695701 2697804 -215339354 - L1PA13 LINE L1 -24 6139 4052 1889 174 17 6 chr3 2698654 2698999 -215338159 - MER93b LTR ERV1 -24 349 1 594 220 0 38 chr3 2699012 2699144 -215338014 - MIR3 SINE MIR -11 197 71 274 299 28 9 chr3 2699185 2699292 -215337866 - MIR3 SINE MIR -10 198 90 187 304 104 55 chr3 2699613 2699814 -215337344 - MIR3 SINE MIR -45 217 2 2561 52 0 0 chr3 2699833 2700141 -215337017 - AluY SINE Alu -3 308 1 330 303 189 0 chr3 2702083 2702215 -215334943 - MIR SINE MIR -8 254 98 183 283 54 22 chr3 2704471 2704563 -215332595 - MIR SINE MIR 0 262 168 230 250 43 43 chr3 2705870 2705962 -215331196 - MIR SINE MIR -75 187 96 601 286 49 16 chr3 2706750 2706935 -215330223 + MIR SINE MIR 11 201 -61 237 263 0 0 chr3 2707324 2707381 -215329777 + L2 LINE L2 3204 3260 -12 229 271 42 93 chr3 2707482 2707600 -215329558 + L2 LINE L2 3145 3256 -16 206 103 0 26 chr3 2708373 2708412 -215328746 + (TC)n Simple_repeat Simple_repeat 1 38 0 1776 230 113 33 chr3 2709495 2710073 -215327085 + MLT1E2 LTR MaLR 3 626 0 233 321 73 22 chr3 2710167 2710304 -215326854 + MIR SINE MIR 52 195 -67 419 215 15 0 chr3 2710599 2710705 -215326453 - MER5A DNA MER1_type -78 111 4 309 248 88 40 chr3 2712129 2712254 -215324904 - L1ME LINE L1 -394 5727 5597 232 338 59 0 chr3 2712507 2712575 -215324583 - L2 LINE L2 0 3272 3201 189 0 0 0 chr3 2712752 2712773 -215324385 + (CATA)n Simple_repeat Simple_repeat 4 24 0 542 215 18 6 chr3 2712875 2713032 -215324126 - L1P4 LINE L1 -536 5630 5468 6158 129 83 24 chr3 2713374 2714536 -215322622 + Tigger3b DNA MER2_type 1 1231 0 21 0 0 0 chr3 2714593 2714614 -215322544 + AT_rich Low_complexity Low_complexity 1 21 0 536 262 0 0 chr3 2715036 2715177 -215321981 + L1MA10 LINE L1 6190 6330 -4 256 349 113 5 chr3 2716198 2716410 -215320748 - L2 LINE L2 0 3313 3079 653 194 47 29 chr3 2716559 2716729 -215320429 - MER5B DNA MER1_type 0 178 6 555 274 27 43 chr3 2716736 2716922 -215320236 - MER5A DNA MER1_type 0 189 7 9960 138 29 1 chr3 2717208 2718882 -215318276 - Tigger1 DNA MER2_type -4 2414 694 2657 158 16 28 chr3 2718880 2719381 -215317777 - Tigger1 DNA MER2_type -1919 499 5 * 835 192 123 78 chr3 2719441 2719629 -215317529 - MLT1A1 LTR MaLR -17 348 137 2293 116 0 3 chr3 2719629 2719932 -215317226 - AluSg SINE Alu -8 302 1 835 192 123 78 chr3 2719932 2720076 -215317082 - MLT1A1 LTR MaLR -228 137 1 4781 163 30 5 chr3 2720606 2721644 -215315514 + L1PA16 LINE L1 5102 6163 -3 266 293 91 10 chr3 2722419 2722518 -215314640 - MIR SINE MIR -70 192 86 426 176 88 0 chr3 2722524 2722615 -215314543 - L2 LINE L2 -4 3268 3170 2523 71 0 0 chr3 2722693 2723003 -215314155 + AluY SINE Alu 1 310 -1 351 313 41 27 chr3 2723044 2723191 -215313967 - MIR SINE MIR -18 244 96 289 365 0 0 chr3 2724234 2724319 -215312839 + MIR SINE MIR 62 146 -62 267 109 0 43 chr3 2724340 2724386 -215312772 + MLT2B1 LTR ERVL 473 516 -4 1987 235 38 8 chr3 2724390 2725016 -215312142 + ERVL LTR ERVL 1 662 -5030 1259 211 99 0 chr3 2725187 2725471 -215311687 + ERVL LTR ERVL 690 1001 -4763 604 242 20 6 chr3 2725853 2726008 -215311150 + MLT1D LTR MaLR 322 442 -63 432 0 0 0 chr3 2726504 2726552 -215310606 + (TG)n Simple_repeat Simple_repeat 2 49 0 1729 137 17 30 chr3 2726872 2727171 -215309987 + AluSx SINE Alu 9 303 -9 533 218 247 6 chr3 2727171 2727341 -215309817 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 2727775 2727901 -215309257 + MIR SINE MIR 20 146 -116 1665 151 17 31 chr3 2728898 2729189 -215307969 - AluJb SINE Alu -17 295 9 226 229 0 0 chr3 2729709 2729770 -215307388 + T-rich Low_complexity Low_complexity 1 61 0 8147 14 0 0 chr3 2729772 2731005 -215306153 - L1HS LINE L1 0 6155 4923 833 129 103 189 chr3 2731241 2731375 -215305783 + MER33 DNA MER1_type 1 145 -2440 1720 167 20 7 chr3 2731375 2731669 -215305489 - AluJb SINE Alu -14 298 1 833 129 103 189 chr3 2731669 2731884 -215305274 + MER33 DNA MER1_type 145 320 -4 533 236 48 36 chr3 2732111 2732276 -215304882 - MER5B DNA MER1_type -1 177 11 287 367 17 0 chr3 2732564 2732684 -215304474 + MIR SINE MIR 8 129 -133 854 131 77 0 chr3 2732873 2733003 -215304155 - FRAM SINE Alu -17 159 20 624 99 148 10 chr3 2733052 2733153 -215304005 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 2733158 2733181 -215303977 + AT_rich Low_complexity Low_complexity 1 23 0 4587 91 21 21 chr3 2733652 2733843 -215303315 + PABL_A LTR ERV1 1 191 -469 2348 93 0 7 chr3 2733843 2734153 -215303005 - AluSx SINE Alu -4 308 1 4587 91 21 21 chr3 2734153 2734612 -215302546 + PABL_A LTR ERV1 190 651 -9 1828 97 37 23 chr3 2736219 2736519 -215300639 - AluSq SINE Alu -9 304 1 1021 210 189 7 chr3 2737077 2737291 -215299867 + MER2 DNA MER2_type 1 283 -61 2314 92 0 0 chr3 2737291 2737586 -215299572 - AluSx SINE Alu -13 299 5 1021 210 189 7 chr3 2737586 2737662 -215299496 + MER2 DNA MER2_type 283 344 0 266 50 25 0 chr3 2737662 2737702 -215299456 + (GA)n Simple_repeat Simple_repeat 1 41 0 746 278 72 30 chr3 2737737 2738100 -215299058 + L1M4 LINE L1 3292 3669 -2477 386 300 55 9 chr3 2738737 2738847 -215298311 + L2 LINE L2 3153 3267 -5 1805 132 69 0 chr3 2738970 2739259 -215297899 - AluSx SINE Alu -3 309 1 477 290 95 68 chr3 2739430 2739651 -215297507 - MIR SINE MIR -34 228 2 359 337 53 60 chr3 2739652 2740042 -215297116 + L2 LINE L2 2686 3074 -198 1105 184 120 5 chr3 2741481 2741698 -215295460 + AluJb SINE Alu 58 299 -13 1702 187 33 3 chr3 2741839 2742138 -215295020 + AluJo SINE Alu 1 308 -4 875 144 0 41 chr3 2747131 2747277 -215289881 + AluSg/x SINE Alu 135 274 -36 753 215 7 0 chr3 2747532 2747681 -215289477 - L1 LINE L1 -1063 5083 4934 943 227 20 49 chr3 2748561 2748808 -215288350 + MIR SINE MIR 2 241 -21 1096 157 8 44 chr3 2749858 2750106 -215287052 - AluJb SINE Alu -5 307 69 22 56 0 0 chr3 2750414 2750450 -215286708 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 2750492 2750513 -215286645 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 2750517 2750541 -215286617 + GC_rich Low_complexity Low_complexity 1 24 0 36 26 0 0 chr3 2750586 2750624 -215286534 + GC_rich Low_complexity Low_complexity 1 38 0 8217 61 2 2 chr3 2752040 2753087 -215284071 + L1P LINE L1 1098 2144 -4002 185 315 0 0 chr3 2753295 2753349 -215283809 - L2 LINE L2 -8 3264 3211 320 116 0 0 chr3 2753421 2753480 -215283678 + Alu SINE Alu 1 40 -263 695 125 0 0 chr3 2753480 2753576 -215283582 + AluSg/x SINE Alu 206 301 -9 180 152 0 0 chr3 2754141 2754174 -215282984 + (CAT)n Simple_repeat Simple_repeat 1 33 0 756 135 0 0 chr3 2754362 2754473 -215282685 + MLT2A1 LTR ERVL 288 398 -46 457 196 17 12 chr3 2754489 2754662 -215282496 + (TA)n Simple_repeat Simple_repeat 2 175 0 312 279 23 0 chr3 2754665 2754751 -215282407 - L1MC4 LINE L1 -1340 6702 6615 453 147 0 0 chr3 2754752 2754847 -215282311 + (TA)n Simple_repeat Simple_repeat 2 96 0 418 73 0 0 chr3 2754855 2754910 -215282248 + MLT2A2 LTR ERVL 399 453 0 3754 177 29 2 chr3 2754912 2755535 -215281623 + MER52-int LTR ERV1 2400 3039 -4052 21 71 0 0 chr3 2755687 2755729 -215281429 + AT_rich Low_complexity Low_complexity 1 42 0 2680 119 3 13 chr3 2755849 2756228 -215280930 + THE1C LTR MaLR 1 375 0 2929 93 82 102 chr3 2756228 2756755 -215280403 + THE1C-int LTR MaLR 1 516 -1064 9262 45 4 0 chr3 2756879 2758009 -215279149 - L1P LINE L1 -1184 4962 3828 26 30 0 0 chr3 2758758 2758791 -215278367 + AT_rich Low_complexity Low_complexity 1 33 0 227 261 54 43 chr3 2759639 2759731 -215277427 + MIR SINE MIR 103 195 -67 1663 156 3 52 chr3 2761161 2761489 -215275669 - AluJb SINE Alu 0 312 1 180 200 0 60 chr3 2761507 2761557 -215275601 - MIR SINE MIR -106 156 110 1665 157 18 11 chr3 2762115 2762401 -215274757 + AluJo SINE Alu 1 288 -24 207 187 36 65 chr3 2764108 2764247 -215272911 + (CATAA)n Simple_repeat Simple_repeat 5 139 0 1538 301 175 12 chr3 2764821 2765627 -215271531 - L3 LINE CR1 -89 1488 552 1379 186 50 47 chr3 2766051 2766195 -215270963 + AluJo SINE Alu 1 143 -169 1451 198 0 62 chr3 2766195 2766518 -215270640 + AluSx SINE Alu 1 303 -9 1379 186 50 47 chr3 2766518 2766674 -215270484 + AluJo SINE Alu 143 302 -10 406 178 140 19 chr3 2768185 2768292 -215268866 + MIR SINE MIR 103 222 -40 207 0 0 0 chr3 2768637 2768660 -215268498 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 2769198 2769261 -215267897 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 2769571 2769601 -215267557 + AT_rich Low_complexity Low_complexity 1 30 0 243 333 0 41 chr3 2770650 2770821 -215266337 + GA-rich Low_complexity Low_complexity 4 167 0 * 251 288 23 11 chr3 2770726 2770832 -215266326 + GA-rich Low_complexity Low_complexity 1 107 0 1298 181 42 0 chr3 2771058 2771273 -215265885 + MER58A DNA MER1_type 1 224 0 1974 223 47 10 chr3 2771291 2771798 -215265360 + L1M4 LINE L1 4413 4938 -1208 309 350 57 13 chr3 2771956 2772113 -215265045 - MIR3 SINE MIR 0 208 45 876 169 0 0 chr3 2772196 2772326 -215264832 + FLAM_A SINE Alu 3 132 -1 2208 114 23 0 chr3 2772910 2773209 -215263949 - AluJb SINE Alu -6 306 1 2071 130 0 3 chr3 2773311 2773604 -215263554 - AluSg SINE Alu -16 294 3 395 283 145 0 chr3 2774416 2774554 -215262604 + MIR SINE MIR 40 197 -65 930 37 0 0 chr3 2775008 2775116 -215262042 - L1PA4 LINE L1 -2 6153 6046 1857 146 4 4 chr3 2775190 2775470 -215261688 + AluSx SINE Alu 1 280 -32 358 306 73 8 chr3 2775646 2775770 -215261388 - L2 LINE L2 0 3272 3141 2287 104 0 3 chr3 2776256 2776555 -215260603 + AluSx SINE Alu 1 298 -14 341 315 109 25 chr3 2776902 2777140 -215260018 + L2 LINE L2 2232 2489 -825 280 226 252 9 chr3 2777241 2777356 -215259802 + MIR3 SINE MIR 40 182 -26 2314 72 6 28 chr3 2777455 2777773 -215259385 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 2777955 2778097 -215259061 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 2778163 2778185 -215258973 + AT_rich Low_complexity Low_complexity 1 22 0 194 331 23 62 chr3 2778220 2778349 -215258809 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 2778420 2778682 -215258476 + AluSc SINE Alu 5 292 -17 209 296 14 28 chr3 2779720 2779791 -215257367 + MIR SINE MIR 20 89 -119 232 235 123 0 chr3 2779980 2780061 -215257097 + MIR3 SINE MIR 102 192 -16 212 342 13 0 chr3 2780689 2780768 -215256390 - MIR SINE MIR -59 149 70 1409 142 0 0 chr3 2781107 2781325 -215255833 - L1PB3 LINE L1 -3 6151 5934 24 53 0 0 chr3 2782002 2782040 -215255118 + AT_rich Low_complexity Low_complexity 1 38 0 239 119 0 51 chr3 2784111 2784170 -215252988 + (CTA)n Simple_repeat Simple_repeat 1 56 0 423 246 53 18 chr3 2784793 2784907 -215252251 + MIR3 SINE MIR 14 131 -77 1851 146 35 0 chr3 2785931 2786102 -215251056 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 2786102 2786148 -215251010 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1851 146 35 0 chr3 2786148 2786264 -215250894 - AluSx SINE Alu -200 112 1 228 109 455 0 chr3 2786653 2786708 -215250450 + MADE1 DNA Mariner 1 80 0 2163 100 7 0 chr3 2787159 2787470 -215249688 + AluSx SINE Alu 1 313 0 1932 163 0 0 chr3 2787489 2787777 -215249381 - AluJb SINE Alu -19 293 6 982 124 0 7 chr3 2787777 2787914 -215249244 - AluJb SINE Alu -176 136 1 281 136 0 0 chr3 2787914 2787958 -215249200 - Alu SINE Alu -256 44 1 * 501 134 93 64 chr3 2787958 2788129 -215249029 + Charlie5 DNA MER1_type 2445 2620 0 534 236 48 36 chr3 2788356 2788521 -215248637 - MER5B DNA MER1_type -1 177 11 272 375 17 0 chr3 2788816 2788936 -215248222 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 2789125 2789255 -215247903 - FRAM SINE Alu -17 159 20 558 109 148 10 chr3 2789304 2789405 -215247753 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 2789410 2789433 -215247725 + AT_rich Low_complexity Low_complexity 1 23 0 4312 90 17 21 chr3 2789904 2790098 -215247060 + PABL_A LTR ERV1 1 194 -466 2223 94 0 7 chr3 2790098 2790395 -215246763 - AluSx SINE Alu -17 295 1 4312 90 17 21 chr3 2790395 2790854 -215246304 + PABL_A LTR ERV1 194 651 -9 201 161 0 0 chr3 2792001 2792032 -215245126 + (CATATA)n Simple_repeat Simple_repeat 1 31 0 1209 267 73 9 chr3 2792622 2792963 -215244195 + MLT1E2 LTR MaLR 264 626 0 411 320 130 8 chr3 2794151 2794404 -215242754 - L3 LINE CR1 -6 1571 1288 258 337 101 22 chr3 2794417 2794595 -215242563 - MIR3 SINE MIR -14 194 3 270 298 158 25 chr3 2794662 2794820 -215242338 + MIR SINE MIR 47 225 -37 461 256 105 42 chr3 2794862 2795053 -215242105 - L2 LINE L2 -6 3307 3105 780 133 5 1 chr3 2795058 2795071 -215242087 + L1P4 LINE L1 5386 5397 -771 4649 81 3 3 chr3 2795071 2795699 -215241459 - L1PA10 LINE L1 0 6168 5541 780 133 5 1 chr3 2795699 2795826 -215241332 + L1PA10 LINE L1 5397 5531 -637 502 331 89 15 chr3 2795829 2796172 -215240986 - L2 LINE L2 -251 3062 2698 401 309 46 29 chr3 2796172 2796347 -215240811 - MER5B DNA MER1_type 0 178 1 390 195 121 10 chr3 2796913 2797061 -215240097 + MER20 DNA MER1_type 1 219 0 187 275 288 0 chr3 2797220 2797300 -215239858 - L2 LINE L2 -8 3264 3162 362 330 58 19 chr3 2797528 2797734 -215239424 - MLT1H LTR MaLR -296 253 40 22 56 0 0 chr3 2798518 2798554 -215238604 + AT_rich Low_complexity Low_complexity 1 36 0 318 340 32 26 chr3 2799513 2799669 -215237489 + MIR3 SINE MIR 33 189 -19 336 292 149 30 chr3 2799869 2800037 -215237121 + MIR3 SINE MIR 3 190 -18 273 362 58 31 chr3 2801479 2801703 -215235455 + MIR SINE MIR 33 262 0 205 191 16 48 chr3 2801840 2801903 -215235255 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 459 314 66 43 chr3 2802016 2802319 -215234839 - L1ME LINE L1 -318 5803 5494 11425 181 77 8 chr3 2802414 2805362 -215231796 + L1ME1 LINE L1 5 3175 -3207 3001 240 73 2 chr3 2805360 2806292 -215230866 + L1ME1 LINE L1 4187 5184 -1198 * 484 142 150 0 chr3 2806286 2806406 -215230752 - L1ME LINE L1 -455 5711 5574 * 579 260 115 40 chr3 2806409 2806705 -215230453 + L1ME1 LINE L1 6076 6393 -9 304 289 65 20 chr3 2807019 2807220 -215229938 + L1ME4a LINE L1 4616 4825 -1321 190 242 65 16 chr3 2807439 2807501 -215229657 - L3b LINE CR1 -118 1465 1401 366 312 48 32 chr3 2807875 2808061 -215229097 + L1ME4a LINE L1 5768 5956 -165 192 250 0 23 chr3 2808341 2808385 -215228773 - L2 LINE L2 -16 3256 3214 239 347 53 0 chr3 2809051 2809126 -215228032 + L2 LINE L2 3134 3212 -60 2317 61 10 13 chr3 2809140 2809479 -215227679 - AluY SINE Alu 0 338 1 2388 56 0 3 chr3 2809585 2809887 -215227271 + AluY SINE Alu 1 301 -10 192 162 108 0 chr3 2810136 2810173 -215226985 + L2 LINE L2 3198 3238 -75 199 260 0 65 chr3 2811325 2811402 -215225756 + MIR SINE MIR 108 179 -83 1296 223 86 45 chr3 2812324 2812768 -215224390 + MLT1C LTR MaLR 6 467 0 466 282 75 21 chr3 2812796 2812984 -215224174 + MIR SINE MIR 49 246 -16 188 382 6 77 chr3 2813830 2814000 -215223158 - MIR3 SINE MIR -11 197 40 700 34 0 0 chr3 2814395 2814483 -215222675 + L1PA3 LINE L1 6067 6154 -1 208 340 92 13 chr3 2817357 2817510 -215219648 + L2 LINE L2 2740 2904 -410 350 282 53 23 chr3 2817792 2817923 -215219235 + MIR SINE MIR 107 241 -21 2737 109 17 45 chr3 2817946 2818412 -215218746 + LTR46 LTR ERV1 1 453 -7 21 0 0 0 chr3 2818412 2818433 -215218725 + AT_rich Low_complexity Low_complexity 1 21 0 2481 167 24 17 chr3 2818484 2818945 -215218213 + MLT1C LTR MaLR 4 467 0 256 350 131 0 chr3 2818945 2819082 -215218076 + MIR SINE MIR 14 168 -94 221 292 246 8 chr3 2819184 2819314 -215217844 - MIR SINE MIR -87 175 15 252 330 9 9 chr3 2819332 2819438 -215217720 + MIR SINE MIR 153 258 -4 290 88 0 5 chr3 2820222 2820275 -215216883 + L1MB7 LINE L1 6130 6178 0 419 315 66 39 chr3 2820531 2820817 -215216341 + L1ME1 LINE L1 4940 5233 -913 274 303 11 22 chr3 2820841 2820930 -215216228 - L2 LINE L2 -36 3277 3190 921 233 75 58 chr3 2820989 2821469 -215215689 + L1ME1 LINE L1 5301 5788 -2020 1405 232 85 0 chr3 2821471 2821811 -215215347 + Cheshire DNA MER1_type 1 369 -2051 1719 177 3 20 chr3 2821997 2822296 -215214862 - AluJb SINE Alu -18 294 1 239 119 0 0 chr3 2823285 2823324 -215213834 + Alu SINE Alu 2 36 -267 1282 127 0 0 chr3 2823324 2823527 -215213631 + AluSg/x SINE Alu 120 312 0 796 196 98 12 chr3 2824129 2824302 -215212856 - MER5A DNA MER1_type -1 188 1 366 284 155 14 chr3 2824845 2824993 -215212165 - MER5B DNA MER1_type -3 175 7 316 216 119 8 chr3 2825011 2825145 -215212013 - MER5C DNA MER1_type -3 321 173 348 256 161 60 chr3 2825151 2825319 -215211839 + L1ME LINE L1 20 204 -5866 353 275 0 18 chr3 2825467 2825576 -215211582 + L1ME1 LINE L1 6055 6161 -5 27 0 0 0 chr3 2825921 2825948 -215211210 + AT_rich Low_complexity Low_complexity 1 27 0 520 289 7 0 chr3 2825950 2826099 -215211059 - MER5C DNA MER1_type -168 156 7 262 313 83 35 chr3 2826257 2826401 -215210757 + L2 LINE L2 3119 3269 -3 603 235 176 6 chr3 2827344 2827514 -215209644 + MIR SINE MIR 58 256 -6 736 243 86 19 chr3 2829747 2829957 -215207201 + MIR SINE MIR 39 262 0 246 287 122 26 chr3 2830826 2830941 -215206217 + MIR SINE MIR 117 242 -20 1236 227 18 21 chr3 2830981 2831267 -215205891 - MER58B DNA MER1_type -9 332 48 854 140 0 35 chr3 2831676 2831819 -215205339 + FRAM SINE Alu 38 175 -1 551 192 30 0 chr3 2832098 2832197 -215204961 + Tigger3(Golem) DNA MER2_type 2 103 -2926 3883 137 82 0 chr3 2832205 2832242 -215204916 + Tigger3(Golem) DNA MER2_type 2285 2318 -710 405 0 0 0 chr3 2832242 2832287 -215204871 + (TG)n Simple_repeat Simple_repeat 2 46 0 3883 137 82 0 chr3 2832287 2832936 -215204222 + Tigger3(Golem) DNA MER2_type 2318 3027 -1 322 338 25 25 chr3 2832968 2833125 -215204033 + MIR SINE MIR 12 168 -94 470 344 14 19 chr3 2833886 2834101 -215203057 + MIR SINE MIR 46 259 -3 2236 88 10 3 chr3 2834160 2834454 -215202704 - AluSc SINE Alu -13 296 1 297 173 39 0 chr3 2836361 2836413 -215200745 - L2 LINE L2 0 3272 3219 2095 202 52 2 chr3 2836624 2837030 -215200128 - MSTB LTR MaLR 0 426 1 291 288 0 12 chr3 2837527 2837607 -215199551 - L2 LINE L2 -4 3309 3231 * 435 294 183 11 chr3 2837606 2837786 -215199372 + MIR SINE MIR 26 236 -26 1029 122 6 0 chr3 2838953 2839109 -215198049 - L1PA10 LINE L1 -6 6162 6006 268 290 121 16 chr3 2839150 2839274 -215197884 + Charlie8 DNA MER1_type 131 267 -2150 2474 83 0 0 chr3 2839386 2839688 -215197470 + AluSq SINE Alu 1 302 -11 183 80 0 0 chr3 2839746 2839771 -215197387 + (TA)n Simple_repeat Simple_repeat 2 26 0 517 322 102 82 chr3 2839976 2841099 -215196059 + L2 LINE L2 2113 3272 0 2576 157 38 14 chr3 2841477 2841974 -215195184 - L1PA16 LINE L1 -4 6162 5654 406 368 41 59 chr3 2842051 2842543 -215194615 + L3 LINE CR1 766 1248 -329 191 306 134 15 chr3 2842919 2843053 -215194105 + L3 LINE CR1 1401 1550 -27 426 247 111 82 chr3 2843261 2843504 -215193654 + MIR SINE MIR 4 253 -9 240 389 20 20 chr3 2845213 2845362 -215191796 - L3 LINE CR1 -92 1485 1337 283 367 69 9 chr3 2845414 2845632 -215191526 - MIR SINE MIR -1 261 31 282 56 0 0 chr3 2846205 2846241 -215190917 + (TC)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr3 2846805 2846828 -215190330 + AT_rich Low_complexity Low_complexity 1 23 0 2177 95 64 14 chr3 2847056 2847413 -215189745 - THE1C LTR MaLR 0 375 1 205 308 15 0 chr3 2849460 2849525 -215187633 - L2 LINE L2 0 3313 3248 508 255 21 28 chr3 2851560 2851705 -215185453 - MIR SINE MIR -1 261 118 25 31 0 0 chr3 2852012 2852044 -215185114 + AT_rich Low_complexity Low_complexity 1 32 0 367 229 28 18 chr3 2852174 2852283 -215184875 + MER81 DNA DNA 4 113 -1 201 363 20 29 chr3 2852285 2852387 -215184771 + L2 LINE L2 3172 3272 0 429 319 63 95 chr3 2852439 2852602 -215184556 - L2 LINE L2 -341 2973 2806 2307 125 11 6 chr3 2852602 2852955 -215184203 - THE1A LTR MaLR 0 355 1 429 319 63 95 chr3 2852955 2853494 -215183664 - L2 LINE L2 -508 2806 2294 331 252 22 50 chr3 2853575 2853714 -215183444 - L1ME4a LINE L1 0 6121 5987 523 208 104 27 chr3 2853759 2853942 -215183216 + MIR SINE MIR 65 261 -1 370 239 92 0 chr3 2855451 2855581 -215181577 + MLT1K LTR MaLR 381 522 -66 290 235 0 108 chr3 2856587 2856632 -215180526 - MIR SINE MIR -70 192 162 1620 185 56 3 chr3 2856632 2856956 -215180202 - MER2 DNA MER2_type -2 342 2 290 235 0 108 chr3 2856956 2857012 -215180146 - MIR SINE MIR -100 162 102 1966 112 13 49 chr3 2857126 2857430 -215179728 - AluSx SINE Alu -16 296 4 245 286 0 0 chr3 2857762 2857818 -215179340 + MIR SINE MIR 88 143 -65 3382 176 16 3 chr3 2858170 2858807 -215178351 - L1MB1 LINE L1 -1 6167 5523 3911 185 30 19 chr3 2858830 2859363 -215177795 - L1MB4 LINE L1 -37 6143 5596 1691 182 16 0 chr3 2859363 2859670 -215177488 - AluJb SINE Alu 0 312 1 3911 185 30 19 chr3 2859670 2859959 -215177199 - L1MB4 LINE L1 -584 5596 5312 * 5814 142 45 27 chr3 2859949 2862101 -215175057 - L1MA4A LINE L1 -5 7000 4804 10287 199 47 15 chr3 2862126 2865254 -215171904 - L1MA4A LINE L1 -3411 3437 2 1375 246 73 45 chr3 2865254 2865827 -215171331 - L1MB4 LINE L1 -814 5332 4744 390 253 20 33 chr3 2867304 2867454 -215169704 + L1ME1 LINE L1 5996 6143 -23 274 309 125 13 chr3 2867507 2867659 -215169499 + MLT1K LTR MaLR 412 580 -8 482 316 158 0 chr3 2868878 2869087 -215168071 + MIR SINE MIR 11 252 -10 230 154 0 0 chr3 2869054 2869093 -215168065 + L2 LINE L2 3224 3262 -10 * 1654 138 0 0 chr3 2869889 2870120 -215167038 + AluJb SINE Alu 73 303 -9 15469 34 1 0 chr3 2871635 2874270 -215162888 - L1PA3 LINE L1 0 6155 3519 26 50 0 0 chr3 2876494 2876534 -215160624 + AT_rich Low_complexity Low_complexity 1 40 0 471 261 70 23 chr3 2877002 2877265 -215159893 - L1M2 LINE L1 -658 5508 5266 581 274 62 6 chr3 2877269 2877448 -215159710 + MIR SINE MIR 65 253 -9 382 296 21 38 chr3 2877745 2877931 -215159227 - L1M4 LINE L1 -1185 4961 4779 282 261 164 42 chr3 2879152 2879405 -215157753 + L1M4 LINE L1 3927 4148 -1998 189 0 0 0 chr3 2879405 2879426 -215157732 + (TTA)n Simple_repeat Simple_repeat 1 21 0 282 261 164 42 chr3 2879426 2879698 -215157460 + L1M4 LINE L1 4148 4516 -1630 1233 211 53 12 chr3 2880437 2880760 -215156398 - LTR52 LTR ERVL 0 421 86 553 177 9 18 chr3 2880790 2880903 -215156255 - LTR52 LTR ERVL -304 117 6 415 259 122 14 chr3 2881120 2881267 -215155891 + MIR SINE MIR 88 250 -12 309 228 13 0 chr3 2881361 2881440 -215155718 + L1M4 LINE L1 4531 4610 -1536 524 221 21 0 chr3 2881629 2881769 -215155389 + Charlie4 DNA MER1_type 1810 1952 -9 456 224 177 47 chr3 2881821 2882075 -215155083 - MLT1E LTR MaLR -3 590 304 284 126 13 82 chr3 2882146 2882305 -215154853 + (TA)n Simple_repeat Simple_repeat 2 149 0 643 257 87 10 chr3 2882338 2882638 -215154520 - L1ME LINE L1 -554 5610 5288 215 271 14 29 chr3 2882803 2882873 -215154285 - L2 LINE L2 -322 2991 2923 2862 313 96 32 chr3 2883141 2884923 -215152235 - L2 LINE L2 0 3313 1414 206 267 0 80 chr3 2886279 2886354 -215150804 + MIR SINE MIR 78 146 -116 37 69 0 0 chr3 2886360 2886432 -215150726 + AT_rich Low_complexity Low_complexity 1 72 0 2332 100 3 0 chr3 2887155 2887454 -215149704 + AluSg SINE Alu 1 300 -10 266 330 18 28 chr3 2888027 2888245 -215148913 - L1ME LINE L1 -546 5575 5360 1452 108 5 0 chr3 2888659 2888871 -215148287 - L1PB1 LINE L1 -10 6141 5929 213 98 12 98 chr3 2889322 2889404 -215147754 + (TCTCCC)n Simple_repeat Simple_repeat 2 76 0 438 316 29 37 chr3 2889834 2890027 -215147131 - MIR SINE MIR -63 145 3 2118 174 42 3 chr3 2892371 2892755 -215144403 + MER47B DNA MER2_type 20 418 0 1682 144 97 0 chr3 2893584 2893862 -215143296 - AluSx SINE Alu -7 305 1 407 301 30 54 chr3 2894235 2894438 -215142720 + MIR3 SINE MIR 8 205 -3 527 251 163 38 chr3 2894810 2895049 -215142109 + L2 LINE L2 2863 3131 -182 234 150 0 0 chr3 2895053 2895093 -215142065 + (CA)n Simple_repeat Simple_repeat 2 41 0 283 304 7 15 chr3 2895101 2895236 -215141922 + (TA)n Simple_repeat Simple_repeat 1 134 0 434 317 12 30 chr3 2895262 2895429 -215141729 + L2 LINE L2 3147 3310 -3 2581 39 0 0 chr3 2895886 2896191 -215140967 - AluYa5 SINE Alu -6 305 1 363 23 0 0 chr3 2896670 2896714 -215140444 + (CA)n Simple_repeat Simple_repeat 2 45 0 352 266 45 52 chr3 2896775 2896929 -215140229 - MLT1J2 LTR MaLR -23 427 275 2197 108 0 3 chr3 2896955 2897250 -215139908 + AluSc SINE Alu 16 309 0 1789 239 21 23 chr3 2897961 2898479 -215138679 - L1MEc LINE L1 -5853 543 27 313 204 9 102 chr3 2899790 2899807 -215137351 + MLT1K LTR MaLR 202 219 -369 2559 104 64 7 chr3 2899807 2900212 -215136946 + MSTA LTR MaLR 1 428 0 313 204 9 102 chr3 2900212 2900302 -215136856 + MLT1K LTR MaLR 219 299 -289 22 0 0 0 chr3 2900596 2900618 -215136540 + AT_rich Low_complexity Low_complexity 1 22 0 283 157 43 43 chr3 2901247 2901317 -215135841 - L1ME4a LINE L1 -74 6047 5978 312 330 102 19 chr3 2902073 2902288 -215134870 + L1ME LINE L1 5152 5384 -762 311 297 37 67 chr3 2902551 2902887 -215134271 + L1ME LINE L1 5507 5825 -296 1958 158 0 3 chr3 2903024 2903321 -215133837 + AluJb SINE Alu 1 296 -16 851 266 60 43 chr3 2904327 2904695 -215132463 - MLT1K LTR MaLR -6 582 209 249 341 0 12 chr3 2904972 2905057 -215132101 - L2 LINE L2 -224 3048 2965 287 290 80 12 chr3 2905190 2905352 -215131806 + L1MD2 LINE L1 5606 5778 -343 222 311 57 77 chr3 2905808 2906056 -215131102 - L2 LINE L2 -194 3078 2836 184 410 43 0 chr3 2906241 2906358 -215130800 + MIR3 SINE MIR 84 205 -3 2076 138 0 0 chr3 2906827 2907125 -215130033 - AluSx SINE Alu -14 298 1 741 250 74 57 chr3 2908807 2909159 -215127999 + L1MD2 LINE L1 5937 6294 -65 269 330 43 0 chr3 2909730 2909845 -215127313 + L2 LINE L2 3194 3313 0 220 345 60 0 chr3 2910652 2910768 -215126390 + L2 LINE L2 2794 2916 -398 597 203 39 0 chr3 2910805 2910958 -215126200 - L1MB7 LINE L1 -16 6168 6010 556 187 174 0 chr3 2910959 2911114 -215126044 - L1MB7 LINE L1 -354 5830 5649 25 0 0 0 chr3 2911927 2911952 -215125206 + AT_rich Low_complexity Low_complexity 1 25 0 1907 151 20 7 chr3 2911961 2912260 -215124898 + AluJb SINE Alu 2 304 -8 213 271 17 0 chr3 2912326 2912385 -215124773 + (TG)n Simple_repeat Simple_repeat 2 61 0 4311 180 42 13 chr3 2912646 2912855 -215124303 - L1MB3 LINE L1 -8 6175 5974 1737 157 52 0 chr3 2912855 2913141 -215124017 - AluJb SINE Alu -10 302 2 4311 180 42 13 chr3 2913141 2913885 -215123273 - L1MB3 LINE L1 -209 5974 5188 250 264 11 66 chr3 2913985 2914076 -215123082 - L2 LINE L2 -1 3312 3227 252 385 24 12 chr3 2914133 2914299 -215122859 - MIR SINE MIR -84 178 11 1366 233 41 41 chr3 2915010 2915400 -215121758 + MLT1B LTR MaLR 1 390 0 300 117 50 0 chr3 2915675 2915735 -215121423 - L1MB8 LINE L1 -1 6177 6115 1498 163 14 3 chr3 2915874 2916156 -215121002 - L1MB7 LINE L1 -91 6093 5809 1593 223 119 10 chr3 2916156 2916636 -215120522 - MER34 LTR ERV1 0 542 11 1089 170 21 30 chr3 2916644 2916879 -215120279 - L1MB7 LINE L1 -365 5819 5587 539 208 60 140 chr3 2916954 2917219 -215119939 + L2 LINE L2 3055 3298 -15 447 336 61 42 chr3 2917518 2917943 -215119215 - MLT1K LTR MaLR -2 586 154 288 304 6 17 chr3 2920711 2920848 -215116310 + CT-rich Low_complexity Low_complexity 1 135 0 423 304 33 72 chr3 2921521 2921797 -215115361 + MER102b DNA MER1_type 43 307 -34 180 333 21 0 chr3 2921900 2921948 -215115210 + L2 LINE L2 3139 3187 -85 230 325 12 0 chr3 2922485 2922568 -215114590 - MIR3 SINE MIR -7 201 118 463 250 38 12 chr3 2922578 2922738 -215114420 + LTR16B LTR ERVL 16 179 -285 674 263 6 0 chr3 2922791 2922970 -215114188 + LTR16B LTR ERVL 285 464 0 338 293 22 50 chr3 2922982 2923163 -215113995 - L2 LINE L2 -240 3032 2857 305 316 0 35 chr3 2923186 2923300 -215113858 - MIR3 SINE MIR -97 111 2 200 313 45 15 chr3 2923504 2923571 -215113587 + MIR SINE MIR 8 76 -186 470 300 123 43 chr3 2923575 2924119 -215113039 - L2 LINE L2 -243 3029 2448 185 270 45 11 chr3 2924647 2924736 -215112422 - L2 LINE L2 -104 3209 3118 1820 158 0 39 chr3 2925132 2925442 -215111716 - AluJb SINE Alu -14 298 1 229 293 98 12 chr3 2925547 2925629 -215111529 + L2 LINE L2 3143 3231 -41 335 264 14 0 chr3 2925809 2925881 -215111277 - L2 LINE L2 -2 3270 3198 528 231 67 0 chr3 2925974 2926108 -215111050 + Tigger6 DNA MER2_type 2 144 -1453 2348 100 0 13 chr3 2926135 2926429 -215110729 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr3 2926429 2926450 -215110708 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 2348 100 0 13 chr3 2926450 2926466 -215110692 + AluSx SINE Alu 292 307 -5 348 196 155 0 chr3 2926466 2926563 -215110595 + Tigger6 DNA MER2_type 1486 1597 0 2288 249 54 32 chr3 2926586 2927429 -215109729 - L1ME3A LINE L1 -5 6165 5299 4874 121 7 5 chr3 2927429 2928173 -215108985 + L1PA13 LINE L1 5408 6152 -11 2288 249 54 32 chr3 2928173 2928188 -215108970 - L1ME3A LINE L1 -871 5299 5286 229 283 62 7 chr3 2928182 2928327 -215108831 - L1M4 LINE L1 -748 5467 5315 * 1245 282 88 49 chr3 2928408 2928698 -215108460 - L1MEc LINE L1 -3180 3035 2758 186 43 0 0 chr3 2928698 2928721 -215108437 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1245 282 88 49 chr3 2928721 2928732 -215108426 - L1MEc LINE L1 -3457 2758 2749 1963 142 28 0 chr3 2928732 2929014 -215108144 + AluSx SINE Alu 1 290 -22 1245 282 88 49 chr3 2929014 2929598 -215107560 - L1MEc LINE L1 -3466 2749 2189 21 36 0 0 chr3 2929598 2929626 -215107532 + AT_rich Low_complexity Low_complexity 1 28 0 1245 282 88 49 chr3 2929626 2930650 -215106508 - L1MEc LINE L1 -4026 2189 1056 2140 109 10 0 chr3 2930650 2930943 -215106215 - AluSx SINE Alu -16 296 1 1245 282 88 49 chr3 2930943 2931029 -215106129 - L1MEc LINE L1 -5159 1056 975 519 308 52 69 chr3 2931697 2932045 -215105113 + MLT1H1-int LTR MaLR 1030 1371 0 1221 276 50 50 chr3 2932064 2932589 -215104569 + MLT1H1 LTR MaLR 25 549 -6 208 245 20 20 chr3 2932594 2932643 -215104515 + MER5A DNA MER1_type 110 158 -31 345 277 121 40 chr3 2934554 2934702 -215102456 + MIR3 SINE MIR 7 165 -43 3087 170 5 9 chr3 2934931 2935621 -215101537 - L1MA5 LINE L1 -440 5860 5174 1654 177 17 9 chr3 2935621 2935959 -215101199 + L1MA5 LINE L1 5943 6295 -5 320 340 20 0 chr3 2936270 2936370 -215100788 + L2 LINE L2 3171 3272 -41 3168 121 20 69 chr3 2936793 2937347 -215099811 - MER1A DNA MER1_type 0 527 1 230 253 96 0 chr3 2937449 2937532 -215099626 - L1ME LINE L1 -469 5652 5562 6415 159 12 8 chr3 2937625 2939768 -215097390 - L1PB1 LINE L1 -2 6865 4719 4385 228 18 5 chr3 2939775 2940293 -215096865 - L1PB1 LINE L1 -2460 4402 3892 216 0 0 0 chr3 2940293 2940317 -215096841 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4385 228 18 5 chr3 2940317 2940909 -215096249 - L1PB1 LINE L1 -2970 3892 3278 * 29396 108 48 44 chr3 2940889 2947007 -215090151 - L1PA7 LINE L1 0 6154 12 2208 165 18 12 chr3 2947018 2947512 -215089646 - L1PB1 LINE L1 -3553 3309 2803 8353 114 60 15 chr3 2947522 2949886 -215087272 - L1PB1 LINE L1 -4249 2614 1 460 352 73 40 chr3 2949992 2950319 -215086839 - L1MEd LINE L1 -5324 795 458 300 318 74 7 chr3 2950937 2951085 -215086073 - L1M LINE L1 -2566 5429 5272 463 198 69 0 chr3 2951088 2951189 -215085969 - L1MA9 LINE L1 -38 6274 6167 * 1110 172 0 22 chr3 2951188 2951415 -215085743 - L1 LINE L1 -814 5332 5111 2322 251 53 27 chr3 2951426 2952797 -215084361 - L1 LINE L1 -3322 4243 2831 6520 267 88 29 chr3 2952812 2954963 -215082195 + L1PA13 LINE L1 2 2278 -4509 369 237 11 0 chr3 2954989 2955082 -215082076 + L1PA15 LINE L1 1565 1658 -5129 257 231 0 0 chr3 2955097 2955149 -215082009 - L1PA15-16 LINE L1 -4433 2416 2365 15449 200 14 16 chr3 2955186 2956338 -215080820 + L1PA15 LINE L1 2315 3468 -3348 1612 128 4 4 chr3 2956338 2956572 -215080586 + AluSc SINE Alu 44 277 -32 198 0 0 0 chr3 2956573 2956595 -215080563 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 15449 200 14 16 chr3 2956595 2959951 -215077207 + L1PA15 LINE L1 3467 6815 -1 1769 225 52 85 chr3 2959995 2960863 -215076295 - L1M2 LINE L1 -4411 2757 1915 231 270 90 10 chr3 2961382 2961482 -215075676 - L1M2 LINE L1 -5378 1790 1683 637 324 51 19 chr3 2961751 2962066 -215075092 - L1M2 LINE L1 -5806 1292 968 3424 283 97 45 chr3 2962228 2964171 -215072987 - L2 LINE L2 0 3313 1276 2199 106 3 0 chr3 2964583 2964876 -215072282 - AluSg SINE Alu -16 294 1 2687 108 10 0 chr3 2965407 2965807 -215071351 + L1PA14 LINE L1 5757 6160 -1 480 310 28 5 chr3 2966345 2966561 -215070597 - L1M4 LINE L1 -2196 3950 3730 24 0 0 0 chr3 2967166 2967190 -215069968 + AT_rich Low_complexity Low_complexity 1 24 0 414 343 164 21 chr3 2969150 2969523 -215067635 - L2 LINE L2 -2 3270 2845 184 246 33 16 chr3 2969549 2969610 -215067548 - L2 LINE L2 -1034 2280 2219 231 188 0 0 chr3 2969662 2969710 -215067448 + (CA)n Simple_repeat Simple_repeat 1 48 0 2482 46 3 0 chr3 2969723 2970027 -215067131 - AluY SINE Alu -6 305 1 348 157 22 101 chr3 2972194 2972283 -215064875 - L1ME3A LINE L1 -12 6158 6077 1111 282 92 5 chr3 2972387 2972788 -215064370 - L1ME3A LINE L1 0 6170 5735 1769 109 12 12 chr3 2973197 2973453 -215063705 - AluSg SINE Alu -18 292 37 2334 98 41 120 chr3 2975142 2975602 -215061556 + MSTC LTR MaLR 5 428 0 251 281 0 0 chr3 2976043 2976107 -215061051 - MIR SINE MIR -115 147 84 540 226 0 0 chr3 2976117 2976223 -215060935 + L2 LINE L2 3189 3294 -19 294 297 39 42 chr3 2977151 2977321 -215059837 + MIR SINE MIR 21 185 -69 417 268 149 30 chr3 2977604 2977772 -215059386 - MIR SINE MIR -50 212 25 335 270 130 55 chr3 2977827 2978027 -215059131 - L1ME3A LINE L1 0 6153 5939 268 204 62 97 chr3 2978067 2978180 -215058978 - L1ME3A LINE L1 -208 5945 5837 1297 236 70 90 chr3 2978186 2978971 -215058187 - L1ME3A LINE L1 -922 5207 4439 527 287 129 30 chr3 2979201 2980112 -215057046 - L1MEd LINE L1 -4671 1639 593 273 246 42 34 chr3 2980867 2980985 -215056173 - MLT1K LTR MaLR -95 493 375 502 54 27 0 chr3 2982812 2982886 -215054272 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 350 228 232 0 chr3 2983300 2983407 -215053751 - MER5A DNA MER1_type 0 178 60 574 55 104 0 chr3 2983407 2983570 -215053588 + (TA)n Simple_repeat Simple_repeat 1 180 0 430 49 110 18 chr3 2983581 2983745 -215053413 + (TA)n Simple_repeat Simple_repeat 2 180 0 354 173 74 0 chr3 2983770 2983932 -215053226 + (TA)n Simple_repeat Simple_repeat 1 174 0 585 152 53 0 chr3 2983946 2984117 -215053041 + (TA)n Simple_repeat Simple_repeat 1 180 0 2660 87 5 0 chr3 2984121 2984489 -215052669 + L1PB1 LINE L1 5782 6151 0 21 36 0 0 chr3 2984489 2984517 -215052641 + AT_rich Low_complexity Low_complexity 1 28 0 312 274 11 11 chr3 2984524 2984619 -215052539 - L2 LINE L2 -225 3088 2994 337 248 187 11 chr3 2984842 2985092 -215052066 + L1MC4a LINE L1 5602 5899 -224 210 326 167 0 chr3 2985099 2985320 -215051838 - L2 LINE L2 -1616 1698 1441 263 274 43 26 chr3 2985504 2985621 -215051537 + MIR SINE MIR 85 203 -59 259 243 57 86 chr3 2985676 2985816 -215051342 + MIR SINE MIR 124 259 -3 213 261 29 14 chr3 2985984 2986053 -215051105 - L3 LINE CR1 -5 1572 1503 332 264 35 0 chr3 2986581 2986668 -215050490 - MIR SINE MIR -7 255 166 195 129 0 0 chr3 2986687 2986718 -215050440 + (TG)n Simple_repeat Simple_repeat 2 32 0 302 294 18 9 chr3 2986780 2986889 -215050269 + MIR3 SINE MIR 97 206 -2 345 47 0 0 chr3 2986978 2987021 -215050137 + (CA)n Simple_repeat Simple_repeat 2 44 0 1487 238 3 3 chr3 2987051 2987333 -215049825 - AluJo SINE Alu -27 285 4 48 53 0 0 chr3 2988191 2988267 -215048891 + AT_rich Low_complexity Low_complexity 1 76 0 204 297 16 31 chr3 2989162 2989226 -215047932 + MIR SINE MIR 33 95 -113 709 289 24 45 chr3 2989258 2989504 -215047654 - MIR SINE MIR -7 255 15 258 350 36 7 chr3 2991417 2991555 -215045603 + MIR SINE MIR 21 165 -65 297 135 0 0 chr3 2991608 2991660 -215045498 + (TC)n Simple_repeat Simple_repeat 1 52 0 464 250 0 9 chr3 2992186 2992294 -215044864 + MLT1F LTR MaLR 88 194 -348 415 287 61 24 chr3 2993514 2993678 -215043480 - MIR SINE MIR -9 253 84 362 250 73 62 chr3 2994280 2994472 -215042686 - MIR SINE MIR -55 207 14 207 254 45 0 chr3 2995339 2995406 -215041752 - MIR SINE MIR -11 251 182 27 0 0 0 chr3 2995593 2995620 -215041538 + AT_rich Low_complexity Low_complexity 1 27 0 1444 246 73 39 chr3 2996123 2996660 -215040498 - MLT1K LTR MaLR -6 582 28 465 19 0 0 chr3 2997574 2997628 -215039530 + (TG)n Simple_repeat Simple_repeat 1 54 0 423 275 35 69 chr3 2998149 2998327 -215038831 - MIR SINE MIR -50 158 20 2049 178 8 11 chr3 2998839 2999205 -215037953 - MLT1A1 LTR MaLR 0 365 1 6061 196 88 83 chr3 2999205 3000510 -215036648 - MLT1A1-int LTR MaLR 0 1735 417 1453 206 16 23 chr3 3000510 3000816 -215036342 + AluJo SINE Alu 1 304 -8 6061 196 88 83 chr3 3000816 3001236 -215035922 - MLT1A1-int LTR MaLR -1318 417 1 1627 189 13 0 chr3 3001236 3001542 -215035616 - MLT1A1 LTR MaLR 0 365 56 654 152 0 118 chr3 3001537 3001715 -215035443 - MLT1E2 LTR MaLR -469 157 1 * 875 293 57 6 chr3 3001716 3002047 -215035111 - L2 LINE L2 -1099 2215 1868 250 286 60 8 chr3 3002170 3002244 -215034914 + L2 LINE L2 1739 1808 -1506 2592 52 0 0 chr3 3002244 3002550 -215034608 - AluY SINE Alu -5 306 1 250 286 60 8 chr3 3002550 3002608 -215034550 + L2 LINE L2 1808 1878 -1436 1779 200 113 20 chr3 3003564 3003728 -215033430 + L1MD3 LINE L1 4958 5105 -1041 297 0 0 0 chr3 3003728 3003761 -215033397 + (TG)n Simple_repeat Simple_repeat 2 34 0 1779 200 113 20 chr3 3003761 3004328 -215032830 + L1MD3 LINE L1 5105 5326 -820 1581 161 51 46 chr3 3004328 3004701 -215032457 - THE1C LTR MaLR 0 375 1 1779 200 113 20 chr3 3004701 3004788 -215032370 + L1MD3 LINE L1 5326 5403 -743 1090 189 43 13 chr3 3004782 3005015 -215032143 + L1ME1 LINE L1 5923 6162 -4 * 288 185 19 56 chr3 3005217 3005325 -215031833 + Charlie8 DNA MER1_type 67 170 -2247 1696 188 0 7 chr3 3005907 3006199 -215030959 + AluJo SINE Alu 1 290 -22 1889 185 33 31 chr3 3006689 3007245 -215029913 - MLT2A2 LTR ERVL 0 554 1 252 59 0 0 chr3 3007299 3007333 -215029825 + (TG)n Simple_repeat Simple_repeat 2 35 0 729 157 9 0 chr3 3009249 3009364 -215027794 + FLAM_C SINE Alu 3 118 -15 202 288 61 15 chr3 3009466 3009532 -215027626 + MIR3 SINE MIR 115 183 -25 1345 315 58 57 chr3 3009724 3010831 -215026327 - L2 LINE L2 -1 3312 2201 307 105 18 0 chr3 3010938 3010995 -215026163 - L1MB2 LINE L1 0 6171 6114 756 174 7 0 chr3 3011066 3011215 -215025943 - L1MB3 LINE L1 0 6183 6034 1788 166 12 0 chr3 3011258 3011584 -215025574 - L1MB2 LINE L1 -131 6040 5711 2281 121 0 7 chr3 3014149 3014455 -215022703 + AluSx SINE Alu 2 305 -7 1796 257 41 58 chr3 3014574 3014924 -215022234 + L1ME3A LINE L1 5175 5530 -640 1849 141 37 3 chr3 3014924 3015251 -215021907 + MER44D DNA MER2_type 1 608 -1 1796 257 41 58 chr3 3015251 3015502 -215021656 + L1ME3A LINE L1 5530 5784 -386 189 94 0 0 chr3 3015502 3015534 -215021624 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr3 3015540 3015564 -215021594 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2002 121 0 7 chr3 3015566 3015846 -215021312 - AluSq SINE Alu -35 278 1 1796 257 41 58 chr3 3015846 3016137 -215021021 + L1ME3A LINE L1 5790 6060 -110 844 196 22 27 chr3 3016933 3017117 -215020041 + MER5A DNA MER1_type 2 184 -5 357 279 35 87 chr3 3017288 3017414 -215019744 - MER5B DNA MER1_type -12 166 50 1706 208 19 6 chr3 3017414 3017774 -215019384 - MLT1A1 LTR MaLR 0 365 1 357 279 35 87 chr3 3017774 3017819 -215019339 - MER5B DNA MER1_type -128 50 4 249 299 149 65 chr3 3018121 3018322 -215018836 + MIR SINE MIR 28 245 -17 250 281 26 61 chr3 3018378 3018492 -215018666 + MIR SINE MIR 31 140 -122 1652 173 141 3 chr3 3018635 3019011 -215018147 - MSTA LTR MaLR 0 428 1 193 274 55 14 chr3 3020140 3020213 -215016945 - L3 LINE CR1 -35 1542 1467 233 274 60 24 chr3 3020627 3020711 -215016447 - L3 LINE CR1 -133 1444 1358 693 293 18 26 chr3 3020735 3020964 -215016194 + MIR SINE MIR 7 233 -29 227 381 44 17 chr3 3021006 3021187 -215015971 - L3 LINE CR1 -238 1339 1154 2599 66 43 3 chr3 3021780 3022130 -215015028 + THE1B LTR MaLR 1 364 0 292 307 88 0 chr3 3022348 3022485 -215014673 - L3 LINE CR1 -713 864 716 21 0 0 0 chr3 3023107 3023128 -215014030 + AT_rich Low_complexity Low_complexity 1 21 0 207 322 0 46 chr3 3023697 3023784 -215013374 - MIR SINE MIR -50 212 130 726 184 87 66 chr3 3024228 3024424 -215012734 + MER63A DNA MER1_type 9 208 -2 847 294 38 55 chr3 3024439 3024786 -215012372 + L2 LINE L2 2289 2629 -685 216 0 0 0 chr3 3024831 3024855 -215012303 + (A)n Simple_repeat Simple_repeat 1 24 0 738 291 121 28 chr3 3024856 3025220 -215011938 - MLT1J2 LTR MaLR -38 412 15 1097 249 23 101 chr3 3025235 3026003 -215011155 + L2 LINE L2 2624 3313 0 395 293 94 17 chr3 3026147 3026232 -215010926 - MIR SINE MIR -38 224 147 1674 167 0 61 chr3 3026232 3026383 -215010775 + AluJb SINE Alu 1 125 -187 2188 99 0 0 chr3 3026383 3026655 -215010503 + AluSx SINE Alu 24 295 -17 1674 167 0 61 chr3 3026655 3026814 -215010344 + AluJb SINE Alu 125 292 -20 395 293 94 17 chr3 3026814 3026909 -215010249 - MIR SINE MIR -115 147 30 355 281 50 41 chr3 3026989 3027110 -215010048 + MIR3 SINE MIR 70 191 -17 282 360 26 0 chr3 3027375 3027489 -215009669 + MIR SINE MIR 102 218 -44 22 56 0 0 chr3 3027875 3027911 -215009247 + AT_rich Low_complexity Low_complexity 1 36 0 270 254 0 0 chr3 3028280 3028390 -215008768 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 378 338 8 8 chr3 3028426 3028559 -215008599 + MIR3 SINE MIR 11 143 -65 2280 111 3 0 chr3 3029075 3029373 -215007785 + AluSx SINE Alu 1 299 -13 333 322 0 0 chr3 3029383 3029498 -215007660 + MIR SINE MIR 142 256 -6 1910 151 18 0 chr3 3029521 3029800 -215007358 - AluSx SINE Alu -10 302 19 1704 212 51 22 chr3 3029805 3030253 -215006905 - MLT1C LTR MaLR -1 466 6 275 246 282 0 chr3 3031445 3031555 -215005603 - MER5A DNA MER1_type 0 189 49 1754 206 80 49 chr3 3031639 3032128 -215005030 - MLT1D LTR MaLR 0 505 2 208 200 22 0 chr3 3032611 3032656 -215004502 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 246 174 43 33 chr3 3033831 3033923 -215003235 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 218 277 0 0 chr3 3033923 3033970 -215003188 - L2 LINE L2 -13 3300 3254 * 410 279 202 6 chr3 3033940 3034123 -215003035 - MIR SINE MIR -24 238 20 437 309 210 22 chr3 3034125 3034449 -215002709 - L2 LINE L2 -1 3271 2887 25 0 0 0 chr3 3034587 3034612 -215002546 + AT_rich Low_complexity Low_complexity 1 25 0 2096 131 76 15 chr3 3034764 3035107 -215002051 + THE1B LTR MaLR 1 364 0 11187 86 6 3 chr3 3035107 3036672 -215000486 + THE1B-int LTR MaLR 1 1571 -9 2066 126 82 15 chr3 3036677 3037018 -215000140 + THE1B LTR MaLR 1 364 0 1422 186 67 25 chr3 3037254 3037581 -214999577 + MER58B DNA MER1_type 1 341 0 244 239 28 42 chr3 3038784 3038855 -214998303 + MIR SINE MIR 77 146 -62 433 206 167 39 chr3 3038927 3039107 -214998051 - MER113 DNA MER1_type? -45 476 274 507 179 32 0 chr3 3039160 3039283 -214997875 + MER53 DNA DNA 63 189 0 325 254 51 17 chr3 3039376 3039510 -214997648 + MLT1H LTR MaLR 19 193 -244 45 19 0 0 chr3 3039775 3039827 -214997331 + AT_rich Low_complexity Low_complexity 1 52 0 199 192 19 58 chr3 3039896 3039948 -214997210 + MIR3 SINE MIR 145 194 -14 320 221 78 58 chr3 3040040 3040143 -214997015 + MIR SINE MIR 70 171 -63 782 131 0 22 chr3 3040144 3040281 -214996877 + L1MB8 LINE L1 5560 5693 -598 611 195 131 64 chr3 3041087 3041323 -214995835 + L1MB8 LINE L1 5925 6176 -2 569 312 112 33 chr3 3041346 3041766 -214995392 + L1M4 LINE L1 3310 3762 -2384 937 196 12 12 chr3 3041777 3041945 -214995213 + AluJo SINE Alu 121 288 -24 1754 169 3 14 chr3 3042419 3042740 -214994418 - AluJb SINE Alu 0 312 2 872 185 29 62 chr3 3043283 3043526 -214993632 - MER106A DNA MER1_type -1 235 1 26 30 0 0 chr3 3043715 3043748 -214993410 + AT_rich Low_complexity Low_complexity 1 33 0 323 211 0 0 chr3 3044057 3044114 -214993044 - L2 LINE L2 0 3272 3216 3248 159 67 20 chr3 3044889 3045530 -214991628 + LTR51 LTR ERV1 1 671 0 283 272 110 73 chr3 3045708 3045762 -214991396 + MIR3 SINE MIR 34 85 -123 780 239 159 44 chr3 3045762 3046126 -214991032 - MLT1I LTR MaLR -1 408 3 283 272 110 73 chr3 3046126 3046207 -214990951 + MIR3 SINE MIR 85 174 -34 1984 180 64 10 chr3 3046430 3046836 -214990322 + MSTB1 LTR MaLR 5 432 0 1056 208 5 18 chr3 3047964 3048185 -214988973 - MER20 DNA MER1_type 0 219 2 1268 171 33 12 chr3 3049370 3049610 -214987548 + MIR SINE MIR 11 255 -7 238 259 83 0 chr3 3049686 3049794 -214987364 - MER53 DNA DNA 0 189 73 205 325 98 16 chr3 3050848 3050971 -214986187 - MIR3 SINE MIR -3 205 73 762 329 76 9 chr3 3051263 3051433 -214985725 - MLT1K LTR MaLR -8 580 423 2132 122 73 14 chr3 3051433 3051787 -214985371 - THE1C LTR MaLR 0 375 1 762 329 76 9 chr3 3051787 3052066 -214985092 - MLT1K LTR MaLR -165 423 101 1732 182 0 20 chr3 3052099 3052401 -214984757 + AluJo SINE Alu 1 296 -16 600 308 195 11 chr3 3052878 3053242 -214983916 - L2 LINE L2 -2 3311 2881 577 234 105 0 chr3 3053304 3053428 -214983730 + FRAM SINE Alu 1 137 -39 542 348 42 42 chr3 3053436 3053562 -214983596 - L2 LINE L2 -537 2777 2652 978 197 16 0 chr3 3053562 3053745 -214983413 + MER5A DNA MER1_type 1 186 -3 542 348 42 42 chr3 3053745 3053931 -214983227 - L2 LINE L2 -661 2653 2465 324 267 69 15 chr3 3054043 3054174 -214982984 + MIR SINE MIR 35 172 -90 300 289 195 27 chr3 3055322 3055471 -214981687 + L3 LINE CR1 277 450 -1127 287 200 27 53 chr3 3056030 3056105 -214981053 + MER81 DNA DNA 6 78 -36 194 250 0 0 chr3 3056112 3056156 -214981002 + L3 LINE CR1 1140 1183 -394 679 286 54 17 chr3 3056200 3056441 -214980717 - MIR SINE MIR 0 262 13 260 244 154 0 chr3 3056443 3056566 -214980592 + L3 LINE CR1 1221 1362 -215 11735 207 24 17 chr3 3057908 3061817 -214975341 - L1PA16 LINE L1 -2 6164 2234 3552 110 70 24 chr3 3061970 3063048 -214974110 - MER11A LTR ERVK -4 1232 1 1258 245 28 3 chr3 3063638 3063965 -214973193 + MER58B DNA MER1_type 1 335 -6 1087 175 0 0 chr3 3064492 3064658 -214972500 - FRAM SINE Alu -10 166 1 610 261 133 11 chr3 3064774 3064933 -214972225 + MIR SINE MIR 8 195 -67 279 0 0 0 chr3 3064933 3064964 -214972194 + (TG)n Simple_repeat Simple_repeat 2 32 0 610 261 133 11 chr3 3064964 3064992 -214972166 + MIR SINE MIR 195 218 -44 398 35 0 18 chr3 3065010 3065067 -214972091 + (TA)n Simple_repeat Simple_repeat 2 57 0 203 328 0 0 chr3 3065093 3065160 -214971998 + MIR SINE MIR 196 262 0 508 258 89 72 chr3 3065283 3065708 -214971450 + MLT1H LTR MaLR 3 592 -1 1631 147 27 17 chr3 3065730 3066023 -214971135 - MSTA LTR MaLR 0 428 133 478 269 304 0 chr3 3066753 3066924 -214970234 + MIR SINE MIR 39 261 -1 353 253 111 25 chr3 3067043 3067363 -214969795 + MLT1K LTR MaLR 158 553 -35 22 0 0 0 chr3 3067485 3067507 -214969651 + AT_rich Low_complexity Low_complexity 1 22 0 364 261 17 25 chr3 3068126 3068245 -214968913 + MLT1K LTR MaLR 132 249 -339 216 0 0 0 chr3 3068257 3068281 -214968877 + (T)n Simple_repeat Simple_repeat 1 24 0 237 258 45 11 chr3 3068543 3068632 -214968526 + L1MCa LINE L1 19 110 -6316 818 266 31 35 chr3 3068653 3068943 -214968215 + L1MCa LINE L1 139 427 -5480 1030 228 47 37 chr3 3069022 3069320 -214967838 + L1MCa LINE L1 417 717 -5190 1226 90 6 0 chr3 3069350 3069528 -214967630 + (GAA)n Simple_repeat Simple_repeat 2 180 0 281 87 0 22 chr3 3069541 3069587 -214967571 + (GAAA)n Simple_repeat Simple_repeat 3 47 0 2807 215 78 18 chr3 3069589 3070697 -214966461 + L1MCa LINE L1 713 1992 -4434 986 172 0 0 chr3 3070695 3070881 -214966277 + L1MA9 LINE L1 5597 5782 -552 * 260 136 0 0 chr3 3070880 3070924 -214966234 - L1M4 LINE L1 -410 5774 5731 * 1514 226 30 37 chr3 3070978 3071469 -214965689 + L1MA9 LINE L1 5784 6271 -41 429 247 64 16 chr3 3071488 3071674 -214965484 + L1MCa LINE L1 2068 2207 -4219 * 635 171 99 13 chr3 3071667 3071819 -214965339 + L1MB3 LINE L1 6011 6175 -8 271 95 0 0 chr3 3071830 3071872 -214965286 + L1MCa LINE L1 2190 2231 -4195 1810 108 0 4 chr3 3071896 3072136 -214965022 + AluSc SINE Alu 1 239 -70 354 325 117 13 chr3 3072168 3072399 -214964759 - MIR SINE MIR 0 262 8 222 278 19 0 chr3 3072428 3072482 -214964676 - L2 LINE L2 -22 3291 3237 2328 115 7 0 chr3 3072618 3072923 -214964235 - AluSx SINE Alu -5 307 1 289 349 88 17 chr3 3074399 3074637 -214962521 + L2 LINE L2 1865 2119 -1195 736 259 70 5 chr3 3074809 3074994 -214962164 - MIR SINE MIR -37 225 29 3411 191 43 32 chr3 3075201 3075783 -214961375 + L1MB8 LINE L1 5309 5906 -272 1951 177 67 98 chr3 3075783 3076466 -214960692 - MER4A LTR ERV1 0 664 3 3411 191 43 32 chr3 3076466 3076738 -214960420 + L1MB8 LINE L1 5906 6173 -5 665 283 70 86 chr3 3077157 3077747 -214959411 - MLT1K LTR MaLR 0 588 9 968 204 75 45 chr3 3079430 3079763 -214957395 - MER2 DNA MER2_type -1 343 1 252 363 189 19 chr3 3079797 3080163 -214956995 + L2 LINE L2 2543 2970 -344 324 294 167 11 chr3 3080538 3080718 -214956440 - MLT1J1 LTR MaLR -171 275 68 222 37 0 0 chr3 3080897 3080924 -214956234 + (TA)n Simple_repeat Simple_repeat 1 27 0 2473 162 7 20 chr3 3080936 3081375 -214955783 + Tigger2a DNA MER2_type 2 434 0 192 258 45 15 chr3 3081857 3081923 -214955235 + L2 LINE L2 3245 3312 -1 2251 114 0 0 chr3 3082835 3083125 -214954033 + AluSx SINE Alu 1 290 -22 1888 102 35 0 chr3 3083536 3083791 -214953367 - AluSq SINE Alu -1 312 49 227 245 0 0 chr3 3084701 3084754 -214952404 + L2 LINE L2 3257 3309 -4 1733 166 3 19 chr3 3084876 3085189 -214951969 - AluJb SINE Alu 0 312 5 695 190 29 36 chr3 3085304 3085441 -214951717 + AluJo SINE Alu 1 136 -176 3937 210 53 38 chr3 3085444 3086547 -214950611 - L1MD1 LINE L1 -2 7805 6101 627 288 101 5 chr3 3087115 3087334 -214949824 + MIR SINE MIR 23 262 0 4269 129 29 7 chr3 3087336 3087956 -214949202 - MER41B LTR ERV1 0 635 2 384 353 0 0 chr3 3088375 3088497 -214948661 - MIR3 SINE MIR -15 193 72 329 286 30 75 chr3 3088811 3088944 -214948214 - L2 LINE L2 -203 3069 2943 368 139 241 13 chr3 3089520 3089599 -214947559 - Tigger2 DNA MER2_type -349 2369 2273 233 254 30 0 chr3 3089589 3089656 -214947502 - Tigger2 DNA MER2_type -2649 69 1 * 333 325 42 6 chr3 3090163 3090329 -214946829 - MIR3 SINE MIR -7 201 30 293 224 30 0 chr3 3090588 3090655 -214946503 + Tigger2 DNA MER2_type 1 69 -2649 * 1929 117 78 3 chr3 3090645 3090952 -214946206 + Tigger2 DNA MER2_type 2273 2602 -116 614 240 0 0 chr3 3091160 3091281 -214945877 - MER45A DNA AcHobo -1 177 57 * 630 183 0 48 chr3 3091278 3091404 -214945754 + Tigger2 DNA MER2_type 2599 2718 0 2286 94 3 0 chr3 3091996 3092294 -214944864 + AluSx SINE Alu 1 299 -13 785 209 120 0 chr3 3093873 3094031 -214943127 - MER45A DNA AcHobo 0 178 2 182 152 61 0 chr3 3094206 3094239 -214942919 - MER5B DNA MER1_type -133 45 11 225 332 158 21 chr3 3094296 3094486 -214942672 - L3 LINE CR1 -353 1224 1009 1915 164 0 3 chr3 3095554 3095853 -214941305 + AluJo SINE Alu 1 298 -14 1788 192 69 38 chr3 3097079 3097487 -214939671 + L1ME1 LINE L1 4902 5341 -825 2198 124 7 0 chr3 3097487 3097794 -214939364 + AluSx SINE Alu 1 309 -3 1788 192 69 38 chr3 3097794 3097971 -214939187 + L1ME1 LINE L1 5341 5511 -655 512 169 24 0 chr3 3097975 3098058 -214939100 + MLT1D LTR MaLR 4 88 -417 1174 151 58 92 chr3 3098101 3098435 -214938723 - AluJb SINE Alu 0 324 1 1308 239 84 16 chr3 3098447 3098815 -214938343 + MLT1D LTR MaLR 113 505 0 603 228 8 0 chr3 3098825 3098952 -214938206 + L1ME1 LINE L1 5518 5645 -521 1939 172 42 15 chr3 3098996 3099398 -214937760 + L1ME1 LINE L1 5747 6159 -7 477 40 40 0 chr3 3099406 3099482 -214937676 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 1906 143 0 13 chr3 3099640 3099940 -214937218 + AluSx SINE Alu 1 296 -16 187 235 0 0 chr3 3099940 3099974 -214937184 - MIR3 SINE MIR -24 184 151 2164 115 81 32 chr3 3100034 3100381 -214936777 + THE1B LTR MaLR 1 364 0 5310 62 1 3 chr3 3100381 3101039 -214936119 + THE1B-int LTR MaLR 1 657 -923 1448 155 4 52 chr3 3101039 3101291 -214935867 + THE1B LTR MaLR 125 364 0 285 264 110 110 chr3 3101292 3101519 -214935639 - MIR SINE MIR -32 230 4 456 240 108 16 chr3 3101678 3101807 -214935351 - MIR3 SINE MIR -48 160 20 1299 201 0 76 chr3 3102008 3102216 -214934942 + AluJo SINE Alu 1 180 -132 2139 173 12 6 chr3 3102216 3102557 -214934601 + MER61A LTR ERV1 1 343 0 1299 201 0 76 chr3 3102557 3102651 -214934507 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 3102651 3102681 -214934477 + AT_rich Low_complexity Low_complexity 1 30 0 382 296 23 109 chr3 3103393 3103650 -214933508 - MIR SINE MIR -9 253 19 244 291 0 25 chr3 3103821 3103900 -214933258 - MIR3 SINE MIR 0 208 132 250 229 148 0 chr3 3103903 3103964 -214933194 - L2 LINE L2 -2 3270 3201 375 269 53 33 chr3 3104811 3104975 -214932183 - LTR43 LTR ERV1 -207 472 154 412 272 72 56 chr3 3105176 3105371 -214931787 + MLT1K LTR MaLR 224 421 -167 871 316 78 22 chr3 3105581 3106180 -214930978 + L1ME4a LINE L1 5348 5980 -141 1585 259 14 11 chr3 3106290 3106649 -214930509 + MLT1A2 LTR MaLR 1 360 -14 333 183 42 0 chr3 3107075 3107146 -214930012 + MER116 DNA Mariner 1 74 -6 2075 128 6 10 chr3 3108883 3109227 -214927931 - AluSx SINE Alu 0 343 1 234 222 139 28 chr3 3109828 3109936 -214927222 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 3110618 3111063 -214926095 - MLT1D LTR MaLR 0 505 46 1679 184 62 42 chr3 3111065 3111246 -214925912 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 3111246 3111888 -214925270 + LTR9 LTR ERV1 1 612 0 1679 184 62 42 chr3 3111888 3111998 -214925160 - MLT2D LTR ERVL -179 235 129 2393 60 0 13 chr3 3111998 3112297 -214924861 + AluY SINE Alu 1 295 -16 1679 184 62 42 chr3 3112297 3112407 -214924751 - MLT2D LTR ERVL -285 129 1 237 143 24 24 chr3 3112415 3112457 -214924701 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 3112474 3112664 -214924494 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 3112917 3112999 -214924159 - L2 LINE L2 -2 3270 3192 223 309 53 59 chr3 3113534 3113613 -214923545 - MIR SINE MIR -40 222 143 2289 83 48 0 chr3 3113613 3113902 -214923256 - AluSc SINE Alu -6 303 1 223 309 53 59 chr3 3113902 3113974 -214923184 - MIR SINE MIR -119 143 72 4187 118 24 5 chr3 3114597 3115188 -214921970 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 3115259 3115431 -214921727 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 3115521 3115819 -214921339 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 3115819 3116344 -214920814 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 3116344 3116558 -214920600 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 3116826 3116955 -214920203 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 3118363 3118763 -214918395 - LTR47A LTR ERVL 0 452 1 4812 139 44 65 chr3 3118775 3120256 -214916902 - MER83B-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 3120257 3120312 -214916846 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 3120316 3120345 -214916813 + (TG)n Simple_repeat Simple_repeat 2 30 0 2202 64 37 7 chr3 3120365 3120660 -214916498 - MLT2A1 LTR ERVL -140 304 1 4759 221 82 41 chr3 3120660 3121659 -214915499 - MER83B-int LTR ERV1 -2026 2165 1209 216 0 0 0 chr3 3121659 3121683 -214915475 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 891 129 0 30 chr3 3121685 3121817 -214915341 - FLAM_C SINE Alu -5 128 1 4759 221 82 41 chr3 3121817 3122038 -214915120 - MER83B-int LTR ERV1 -2982 1209 891 1570 181 4 0 chr3 3122041 3122322 -214914836 - MER41B LTR ERV1 -353 282 1 699 171 43 41 chr3 3122339 3122533 -214914625 - MER83B-int LTR ERV1 -2590 2290 2009 307 293 75 34 chr3 3122675 3122822 -214914336 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 3122836 3122854 -214914304 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 3122854 3123226 -214913932 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 3123226 3123592 -214913566 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 3123608 3123814 -214913344 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 3124330 3124358 -214912800 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 3124358 3124661 -214912497 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 3124683 3124767 -214912391 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 3124998 3125084 -214912074 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 3125084 3125772 -214911386 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 3125772 3126178 -214910980 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 3126299 3126539 -214910619 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 3126957 3126998 -214910160 + AT_rich Low_complexity Low_complexity 1 41 0 1853 173 7 0 chr3 3126998 3127304 -214909854 + AluJb SINE Alu 1 308 -4 243 0 0 0 chr3 3127304 3127331 -214909827 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 252 0 0 0 chr3 3127330 3127358 -214909800 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr3 3128679 3128700 -214908458 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 3129184 3129624 -214907534 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 3129717 3129781 -214907377 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 3129784 3129824 -214907334 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 3129824 3129924 -214907234 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 3129838 3129935 -214907223 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 3129974 3130438 -214906720 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 3131802 3132003 -214905155 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 3133321 3133762 -214903396 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 3133771 3134176 -214902982 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 3134176 3134387 -214902771 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 3134726 3134856 -214902302 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 3135027 3135085 -214902073 + MIR3 SINE MIR 8 62 -146 4922 172 27 34 chr3 3135195 3136581 -214900577 + L1MB3 LINE L1 4810 6181 -2 2324 135 33 33 chr3 3138105 3138174 -214898984 - THE1B LTR MaLR 0 364 296 1994 125 3 14 chr3 3138174 3138471 -214898687 + AluSx SINE Alu 1 294 -18 2324 135 33 33 chr3 3138471 3138765 -214898393 - THE1B LTR MaLR -67 297 1 297 320 70 31 chr3 3139536 3139664 -214897494 + L2 LINE L2 3132 3264 -8 1928 147 3 13 chr3 3139899 3140212 -214896946 - AluJb SINE Alu -2 310 1 1721 170 10 10 chr3 3141146 3141446 -214895712 + AluJo SINE Alu 1 300 -12 1280 177 42 100 chr3 3141461 3141771 -214895387 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 3141843 3141923 -214895235 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 3142015 3142380 -214894778 + THE1B LTR MaLR 1 364 0 621 317 176 32 chr3 3142383 3142724 -214894434 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 3143830 3143968 -214893190 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 3144024 3144176 -214892982 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 3144479 3144570 -214892588 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 3144570 3144891 -214892267 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 3144891 3145033 -214892125 - Charlie8 DNA MER1_type -218 123 2 5415 129 16 5 chr3 3145303 3146119 -214891039 - L1MC1 LINE L1 0 6333 5509 442 306 25 13 chr3 3147173 3147330 -214889828 + MIR SINE MIR 104 262 0 337 258 13 0 chr3 3147511 3147598 -214889560 + MIR SINE MIR 40 126 -92 311 301 68 20 chr3 3147599 3147745 -214889413 + MIR SINE MIR 49 201 -61 993 215 45 0 chr3 3147991 3148191 -214888967 + MER3 DNA MER1_type 1 209 0 2426 96 0 0 chr3 3148712 3149024 -214888134 + AluSx SINE Alu 1 312 0 580 294 99 14 chr3 3149199 3149420 -214887738 + MIR SINE MIR 18 257 -5 261 119 48 0 chr3 3150249 3150291 -214886867 + MLT1D LTR MaLR 308 351 -154 * 1154 164 116 58 chr3 3150267 3150578 -214886580 - MLT1D LTR MaLR -165 340 12 817 258 33 16 chr3 3150663 3150845 -214886313 + MER5A DNA MER1_type 1 185 -4 3242 138 14 68 chr3 3151146 3151502 -214885656 - LTR26B LTR ERV1 0 531 214 1604 174 19 47 chr3 3151502 3151819 -214885339 - AluJb SINE Alu -4 308 1 3242 138 14 68 chr3 3151819 3152020 -214885138 - LTR26B LTR ERV1 -317 214 4 415 253 114 32 chr3 3152186 3152344 -214884814 - MIR3 SINE MIR 0 208 38 1071 103 0 7 chr3 3152739 3152885 -214884273 - AluSg/x SINE Alu -30 279 135 438 333 0 0 chr3 3154002 3154113 -214883045 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 3154121 3154144 -214883014 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 3154203 3154590 -214882568 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 3155487 3155637 -214881521 - MER5A DNA MER1_type -10 179 1 360 364 23 6 chr3 3156156 3156332 -214880826 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 3156424 3156971 -214880187 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 3157151 3157225 -214879933 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 3157470 3157576 -214879582 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 3157952 3158105 -214879053 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 3159012 3159067 -214878091 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 3159069 3159202 -214877956 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 3159258 3159335 -214877823 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 3159704 3159771 -214877387 - L2 LINE L2 -7 3265 3198 2214 124 3 0 chr3 3159938 3160245 -214876913 + AluSq SINE Alu 1 308 -5 1188 263 59 52 chr3 3160335 3160796 -214876362 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 3160818 3160882 -214876276 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 3160882 3161276 -214875882 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 3161353 3161831 -214875327 - LTR50 LTR ERVL 0 795 124 1510 164 115 86 chr3 3161973 3162490 -214874668 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 3162508 3162695 -214874463 - MIR SINE MIR -21 241 47 1182 199 17 39 chr3 3163602 3163833 -214873325 - AluJo SINE Alu -86 226 1 819 207 92 6 chr3 3163833 3164007 -214873151 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 3165587 3165616 -214871542 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 3166094 3166209 -214870949 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 3166561 3166627 -214870531 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 3166877 3166940 -214870218 + (TG)n Simple_repeat Simple_repeat 2 64 0 366 267 0 11 chr3 3166940 3167030 -214870128 - LTR67 LTR ERVL -9 548 460 345 235 43 17 chr3 3167039 3167154 -214870004 - L1ME LINE L1 -374 5747 5630 294 290 30 53 chr3 3167686 3167817 -214869341 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 3168545 3168604 -214868554 + (TA)n Simple_repeat Simple_repeat 2 60 0 742 249 73 96 chr3 3168649 3169051 -214868107 + MLT1I LTR MaLR 1 402 -7 209 296 59 89 chr3 3169060 3169195 -214867963 - MIR SINE MIR -61 147 17 468 0 0 0 chr3 3170376 3170428 -214866730 + (CA)n Simple_repeat Simple_repeat 2 53 0 449 301 65 37 chr3 3170442 3170688 -214866470 - Charlie8 DNA MER1_type -2160 257 5 337 195 26 26 chr3 3171213 3171290 -214865868 - MLT1L LTR MaLR -536 79 3 194 298 0 0 chr3 3171305 3171362 -214865796 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 3171439 3171467 -214865691 + AT_rich Low_complexity Low_complexity 1 28 0 1121 265 70 26 chr3 3171500 3172065 -214865093 - L2 LINE L2 -159 3154 2570 1789 164 7 20 chr3 3172094 3172392 -214864766 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 3172392 3172414 -214864744 + AT_rich Low_complexity Low_complexity 1 22 0 222 338 13 0 chr3 3173557 3173634 -214863524 - MIR SINE MIR -63 145 68 186 293 35 0 chr3 3174362 3174420 -214862738 + MIR3 SINE MIR 112 171 -37 376 303 141 15 chr3 3175127 3175325 -214861833 - MIR SINE MIR 0 262 40 203 79 26 0 chr3 3176343 3176381 -214860777 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1002 146 189 5 chr3 3177224 3177409 -214859749 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 3177572 3177595 -214859563 + AT_rich Low_complexity Low_complexity 1 23 0 2289 112 0 0 chr3 3177623 3177926 -214859232 - AluSx SINE Alu -9 303 1 315 365 0 0 chr3 3178082 3178197 -214858961 - MIR3 SINE MIR -23 185 71 298 163 0 0 chr3 3178197 3178246 -214858912 + L1MC3 LINE L1 7045 7093 -692 291 262 24 12 chr3 3178250 3178334 -214858824 + MLT1F1 LTR MaLR 40 124 -443 2180 187 74 71 chr3 3178335 3178930 -214858228 + L1MC3 LINE L1 7189 7785 0 2220 112 0 13 chr3 3179717 3180020 -214857138 - AluSx SINE Alu -13 299 1 2094 121 0 0 chr3 3181021 3181326 -214855832 + AluSx SINE Alu 1 305 0 520 281 67 12 chr3 3181740 3181904 -214855254 - MER5B DNA MER1_type 0 178 6 276 87 0 43 chr3 3182616 3182662 -214854496 + L2 LINE L2 3195 3238 -75 2162 112 3 0 chr3 3183274 3183569 -214853589 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 3183757 3183914 -214853244 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 3184022 3184050 -214853108 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 3184098 3184393 -214852765 + AluSx SINE Alu 1 296 -16 2365 123 5 32 chr3 3187904 3188278 -214848880 - THE1B LTR MaLR 0 364 1 7667 128 30 8 chr3 3188607 3189919 -214847239 - Tigger1 DNA MER2_type 0 2418 1079 3359 134 107 6 chr3 3189910 3190544 -214846614 - Tigger1 DNA MER2_type -1658 760 63 * 292 211 273 19 chr3 3192396 3192557 -214844601 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 3192692 3192905 -214844253 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 3192947 3193138 -214844020 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 3193174 3193718 -214843440 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 3193989 3194015 -214843143 + AT_rich Low_complexity Low_complexity 1 26 0 360 232 36 94 chr3 3195076 3195184 -214841974 + L2 LINE L2 3182 3282 -31 2557 98 30 6 chr3 3195184 3195550 -214841608 - THE1C LTR MaLR 0 375 1 360 232 36 94 chr3 3195550 3195579 -214841579 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 3195583 3195733 -214841425 + MIR SINE MIR 34 183 -79 1688 188 40 3 chr3 3195986 3196311 -214840847 + MER1B DNA MER1_type 1 337 0 245 295 105 11 chr3 3196402 3196497 -214840661 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 3197084 3197208 -214839950 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 3197245 3197387 -214839771 - L1MC/D LINE L1 -1445 4701 4531 1890 151 18 0 chr3 3198283 3198568 -214838590 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 3198808 3198898 -214838260 + MIR SINE MIR 13 105 -157 1055 130 0 34 chr3 3202051 3202228 -214834930 + AluSg/x SINE Alu 124 294 -15 428 255 135 20 chr3 3207348 3207548 -214829610 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 3208058 3208182 -214828976 - MIR3 SINE MIR -12 196 87 2430 69 3 0 chr3 3208851 3209155 -214828003 - AluY SINE Alu -6 305 1 265 368 60 8 chr3 3209265 3209382 -214827776 + L2 LINE L2 3191 3313 0 233 274 140 18 chr3 3210449 3210506 -214826652 + L1MC/D LINE L1 5352 5401 -2407 1743 149 72 0 chr3 3210506 3210782 -214826376 - AluSx SINE Alu -16 296 1 233 274 140 18 chr3 3210782 3210888 -214826270 + L1MC/D LINE L1 5401 5535 -2273 462 306 0 0 chr3 3211060 3211171 -214825987 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 3211890 3212095 -214825063 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 3212363 3212525 -214824633 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 3212827 3212973 -214824185 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 3213020 3213076 -214824082 + (TG)n Simple_repeat Simple_repeat 1 56 0 491 221 302 0 chr3 3213120 3213292 -214823866 - MIR SINE MIR -10 252 29 2263 71 35 0 chr3 3213294 3213576 -214823582 - AluY SINE Alu -19 292 1 1877 154 3 13 chr3 3214348 3214659 -214822499 + AluJb SINE Alu 1 308 -4 206 342 57 19 chr3 3214676 3214834 -214822324 - L2 LINE L2 -192 3080 2917 432 288 113 19 chr3 3215176 3215388 -214821770 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 3215574 3215855 -214821303 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 3215859 3216686 -214820472 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 3217206 3217295 -214819863 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 3217426 3217732 -214819426 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 3218085 3218591 -214818567 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 3219198 3219423 -214817735 + MER112 DNA MER1_type 4 260 0 1498 180 17 30 chr3 3220812 3221107 -214816051 - AluJb SINE Alu -21 291 1 226 229 0 0 chr3 3221619 3221680 -214815478 + T-rich Low_complexity Low_complexity 1 61 0 7604 15 0 0 chr3 3221682 3222915 -214814243 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 3223151 3223285 -214813873 + MER33 DNA MER1_type 1 145 -2440 1734 167 20 7 chr3 3223285 3223579 -214813579 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 3223579 3223794 -214813364 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 3224021 3224186 -214812972 - MER5B DNA MER1_type -1 177 11 293 367 17 0 chr3 3224474 3224594 -214812564 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 3224783 3224913 -214812245 - FRAM SINE Alu -17 159 20 583 99 148 10 chr3 3224962 3225063 -214812095 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 3225068 3225091 -214812067 + AT_rich Low_complexity Low_complexity 1 23 0 4223 92 21 21 chr3 3225562 3225753 -214811405 + PABL_A LTR ERV1 1 191 -469 2343 93 0 7 chr3 3225753 3226063 -214811095 - AluSx SINE Alu -4 308 1 4223 92 21 21 chr3 3226063 3226522 -214810636 + PABL_A LTR ERV1 190 651 -9 1802 97 37 23 chr3 3228129 3228429 -214808729 - AluSq SINE Alu -9 304 1 888 210 189 7 chr3 3228987 3229201 -214807957 + MER2 DNA MER2_type 1 283 -61 2305 92 0 0 chr3 3229201 3229496 -214807662 - AluSx SINE Alu -13 299 5 888 210 189 7 chr3 3229496 3229572 -214807586 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 3229572 3229619 -214807539 + (GA)n Simple_repeat Simple_repeat 1 48 0 2595 258 52 18 chr3 3229648 3230678 -214806480 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 3230780 3231065 -214806093 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 3231065 3231087 -214806071 + AT_rich Low_complexity Low_complexity 1 22 0 2477 233 26 51 chr3 3231087 3231127 -214806031 + L1ME1 LINE L1 5403 5443 -723 2053 131 7 0 chr3 3231127 3231418 -214805740 - AluSg SINE Alu -17 293 1 2477 233 26 51 chr3 3231418 3231921 -214805237 + L1ME1 LINE L1 5443 5957 -209 2189 113 0 0 chr3 3231921 3232214 -214804944 + AluSg SINE Alu 1 293 -17 2477 233 26 51 chr3 3232214 3232397 -214804761 + L1ME1 LINE L1 5957 6111 -55 1731 151 156 42 chr3 3232397 3232470 -214804688 - MSTA LTR MaLR 0 428 365 2413 52 0 29 chr3 3232470 3232776 -214804382 + AluY SINE Alu 1 297 -14 1731 151 156 42 chr3 3232776 3233086 -214804072 - MSTA LTR MaLR -63 365 1 2477 233 26 51 chr3 3233086 3233135 -214804023 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 3233601 3233896 -214803262 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 3234235 3234261 -214802897 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 3234336 3234512 -214802646 - MIR SINE MIR -32 230 32 672 178 8 0 chr3 3234852 3234970 -214802188 - MLT1D LTR MaLR 0 505 387 2275 104 0 0 chr3 3235179 3235477 -214801681 - AluSx SINE Alu -3 309 12 1523 195 3 36 chr3 3235700 3236008 -214801150 + AluJo SINE Alu 1 298 -14 863 168 0 0 chr3 3236052 3236177 -214800981 + AluJb SINE Alu 1 125 -187 1857 158 18 0 chr3 3237038 3237322 -214799836 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr3 3237326 3237354 -214799804 + AT_rich Low_complexity Low_complexity 1 28 0 202 144 22 0 chr3 3237615 3237661 -214799497 + MIR SINE MIR 99 146 -62 2022 137 0 22 chr3 3237776 3238091 -214799067 + AluSx SINE Alu 3 310 -2 4444 182 19 25 chr3 3238372 3239252 -214797906 - L1MB8 LINE L1 0 6178 5304 839 199 6 0 chr3 3239255 3239411 -214797747 - FRAM SINE Alu 0 40 1 2019 181 57 53 chr3 3239413 3239541 -214797617 - L1MB8 LINE L1 -830 5316 5190 2072 121 4 4 chr3 3239541 3239843 -214797315 - AluSx SINE Alu 0 302 1 2019 181 57 53 chr3 3239843 3239968 -214797190 - L1MB8 LINE L1 -956 5190 5067 2284 110 0 10 chr3 3239968 3240277 -214796881 + AluSx SINE Alu 6 311 -1 2019 181 57 53 chr3 3240277 3240546 -214796612 - L1MB8 LINE L1 -1079 5067 4789 274 180 16 141 chr3 3240967 3241095 -214796063 + MLT1H LTR MaLR 438 549 0 338 249 115 91 chr3 3241183 3241241 -214795917 - L1ME4a LINE L1 -232 5889 5834 1906 135 7 0 chr3 3241241 3241522 -214795636 + AluSg SINE Alu 13 295 -15 338 249 115 91 chr3 3241522 3241716 -214795442 - L1ME4a LINE L1 -287 5834 5631 2215 108 0 7 chr3 3241963 3242260 -214794898 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 3242364 3242390 -214794768 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2277 97 0 3 chr3 3242549 3242838 -214794320 + AluSx SINE Alu 1 288 -24 251 284 0 68 chr3 3245633 3245721 -214791437 - L2 LINE L2 -23 3249 3168 261 0 0 0 chr3 3246907 3246936 -214790222 + (TTG)n Simple_repeat Simple_repeat 2 30 0 214 409 0 0 chr3 3248133 3248226 -214788932 + MIR SINE MIR 21 113 -149 964 186 9 24 chr3 3249842 3249983 -214787175 + MER3 DNA MER1_type 2 141 -68 1953 143 7 7 chr3 3249983 3250270 -214786888 + AluSx SINE Alu 1 287 -25 964 186 9 24 chr3 3250270 3250338 -214786820 + MER3 DNA MER1_type 141 208 -1 269 269 86 30 chr3 3250432 3250666 -214786492 + L1ME4a LINE L1 5873 6119 -2 665 224 39 86 chr3 3250753 3251008 -214786150 + MER112 DNA MER1_type 6 248 -12 1274 124 0 43 chr3 3251139 3251325 -214785833 + AluSx SINE Alu 1 178 -134 383 246 53 18 chr3 3251988 3252102 -214785056 + MIR3 SINE MIR 14 131 -77 1827 146 38 0 chr3 3253126 3253296 -214783862 - AluSx SINE Alu -14 298 111 414 0 0 0 chr3 3253296 3253342 -214783816 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1827 146 38 0 chr3 3253342 3253458 -214783700 - AluSx SINE Alu -201 111 1 253 109 455 0 chr3 3253847 3253902 -214783256 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 3254353 3254664 -214782494 + AluSx SINE Alu 1 313 0 1934 163 0 0 chr3 3254683 3254971 -214782187 - AluJb SINE Alu -19 293 6 950 117 7 15 chr3 3254971 3255108 -214782050 - AluJb SINE Alu -176 136 1 294 320 58 19 chr3 3255265 3255421 -214781737 - MIR3 SINE MIR -8 200 39 2021 140 10 0 chr3 3255617 3255910 -214781248 + AluSx SINE Alu 1 296 -16 1493 182 10 42 chr3 3257319 3257632 -214779526 - AluJo SINE Alu -9 303 1 768 209 12 6 chr3 3257668 3257831 -214779327 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3258231 3258532 -214778626 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3259659 3259755 -214777403 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3260134 3260430 -214776728 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3261056 3261353 -214775805 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3261353 3261546 -214775612 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3261797 3261915 -214775243 + L2 LINE L2 3170 3303 -10 2330 101 7 0 chr3 3262185 3262493 -214774665 + AluSp SINE Alu 1 310 -3 537 188 240 19 chr3 3262753 3262907 -214774251 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 3263085 3263118 -214774040 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 3263156 3263299 -214773859 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 3263449 3263516 -214773642 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 3263785 3264090 -214773068 - AluSg SINE Alu -5 305 1 426 230 104 22 chr3 3266836 3266971 -214770187 - L2 LINE L2 -5 3267 3122 2176 99 51 0 chr3 3267339 3267633 -214769525 + AluSx SINE Alu 1 309 -3 672 178 8 0 chr3 3267842 3267960 -214769198 + MLT1D LTR MaLR 387 505 0 499 258 141 0 chr3 3268300 3268463 -214768695 + MIR SINE MIR 32 217 -45 180 77 0 0 chr3 3268551 3268577 -214768581 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1752 139 58 41 chr3 3268916 3269211 -214767947 - AluSx SINE Alu -12 300 1 2777 231 45 80 chr3 3269677 3269726 -214767432 - L1ME1 LINE L1 -6 6160 6111 1817 140 153 42 chr3 3269726 3270037 -214767121 + MSTA LTR MaLR 1 365 -63 2463 52 0 29 chr3 3270037 3270343 -214766815 - AluY SINE Alu -14 297 1 1817 140 153 42 chr3 3270343 3270416 -214766742 + MSTA LTR MaLR 365 428 0 2777 231 45 80 chr3 3270416 3270599 -214766559 - L1ME1 LINE L1 -55 6111 5923 2215 113 0 0 chr3 3270599 3270892 -214766266 - AluSg SINE Alu -17 293 1 2777 231 45 80 chr3 3270892 3271395 -214765763 - L1ME1 LINE L1 -243 5923 5404 1812 165 7 0 chr3 3271395 3271686 -214765472 + AluSg SINE Alu 1 293 -17 2777 231 45 80 chr3 3271686 3271748 -214765410 - L1ME1 LINE L1 -762 5404 5411 1536 193 14 14 chr3 3271748 3272033 -214765125 - AluJb SINE Alu -27 285 1 2777 231 45 80 chr3 3272033 3272091 -214765067 - L1ME1 LINE L1 -754 5412 5353 2948 249 57 23 chr3 3272135 3273165 -214763993 - L1ME1 LINE L1 -1790 4356 3292 308 64 21 0 chr3 3273193 3273240 -214763918 + (TC)n Simple_repeat Simple_repeat 1 48 0 930 213 189 7 chr3 3273240 3273316 -214763842 - MER2 DNA MER2_type 0 344 283 2335 92 0 0 chr3 3273316 3273611 -214763547 + AluSx SINE Alu 5 299 -13 930 213 189 7 chr3 3273611 3273825 -214763333 - MER2 DNA MER2_type -61 283 1 1863 97 37 23 chr3 3274383 3274683 -214762475 + AluSq SINE Alu 1 304 -9 22 0 0 0 chr3 3275560 3275582 -214761576 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 3276314 3276344 -214760814 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 3277360 3277685 -214759473 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 3277721 3277884 -214759274 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3278284 3278585 -214758573 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3279712 3279808 -214757350 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3280187 3280483 -214756675 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3281109 3281406 -214755752 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3281406 3281599 -214755559 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3281850 3281968 -214755190 + L2 LINE L2 3170 3303 -10 2206 106 7 0 chr3 3282238 3282531 -214754627 + AluSx SINE Alu 1 295 -17 2222 114 23 0 chr3 3282635 3282934 -214754224 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 3283518 3283648 -214753510 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 3283731 3283888 -214753270 + MIR3 SINE MIR 45 208 0 1960 221 47 10 chr3 3284046 3284553 -214752605 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 3284571 3284786 -214752372 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 3285214 3285500 -214751658 - AluSx SINE Alu -18 294 1 1706 195 7 0 chr3 3286247 3286539 -214750619 + AluJb SINE Alu 1 294 -18 396 0 0 0 chr3 3286540 3286584 -214750574 + (CA)n Simple_repeat Simple_repeat 2 45 0 659 165 78 0 chr3 3286680 3286795 -214750363 - FLAM_C SINE Alu -19 124 1 213 346 30 20 chr3 3286908 3287009 -214750149 + L2 LINE L2 3169 3270 -2 1517 113 0 18 chr3 3287254 3287475 -214749683 + AluSg SINE Alu 1 217 -93 2337 87 0 3 chr3 3287679 3287979 -214749179 + AluY SINE Alu 1 299 -12 2175 104 3 3 chr3 3288132 3288420 -214748738 + AluSq SINE Alu 1 288 -25 280 358 9 18 chr3 3288501 3288610 -214748548 + MIR SINE MIR 14 121 -141 1775 164 21 3 chr3 3288660 3288946 -214748212 - AluJb SINE Alu -21 291 1 1210 149 0 0 chr3 3288946 3289147 -214748011 - LTR26B LTR ERV1 -327 204 4 414 253 114 32 chr3 3289313 3289471 -214747687 - MIR3 SINE MIR 0 208 38 1064 103 0 7 chr3 3289866 3290012 -214747146 - AluSg/x SINE Alu -30 279 135 416 351 0 0 chr3 3291129 3291240 -214745918 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 3291248 3291271 -214745887 + AT_rich Low_complexity Low_complexity 1 23 0 2537 103 8 5 chr3 3291330 3291717 -214745441 + L1PB1 LINE L1 5763 6150 -1 305 347 200 7 chr3 3292611 3292761 -214744397 - MER5A DNA MER1_type -10 179 1 217 210 65 32 chr3 3292781 3292843 -214744315 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 3292871 3292906 -214744252 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 381 358 23 6 chr3 3293281 3293457 -214743701 + MIR3 SINE MIR 17 195 -13 1657 201 16 101 chr3 3293549 3294096 -214743062 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 3294276 3294350 -214742808 + (TA)n Simple_repeat Simple_repeat 2 76 0 208 274 170 28 chr3 3294595 3294701 -214742457 - MIR3 SINE MIR -4 204 84 322 281 183 7 chr3 3295077 3295230 -214741928 - MIR3 SINE MIR -14 194 15 231 291 0 0 chr3 3296137 3296192 -214740966 - MIR3 SINE MIR 0 208 154 367 263 53 0 chr3 3296194 3296327 -214740831 + MER117 DNA MER1_type 2 141 -56 199 208 260 39 chr3 3296383 3296460 -214740698 - MIR3 SINE MIR -52 156 63 209 373 15 0 chr3 3296833 3296900 -214740258 - L2 LINE L2 -7 3265 3198 2243 123 3 0 chr3 3297067 3297376 -214739782 + AluSq SINE Alu 1 310 -3 1061 242 66 44 chr3 3297475 3297903 -214739255 - L1ME3A LINE L1 -8 6162 5730 422 78 16 0 chr3 3297949 3298013 -214739145 - MER41A LTR ERV1 -90 464 400 960 287 89 2 chr3 3298013 3298407 -214738751 - L1ME3A LINE L1 -452 5718 5291 730 236 220 0 chr3 3298484 3298942 -214738216 - LTR50 LTR ERVL 0 795 140 1378 166 115 86 chr3 3299104 3299621 -214737537 - LTR36 LTR ERV1 0 611 1 648 222 63 16 chr3 3299639 3299828 -214737330 - MIR SINE MIR -21 241 44 1329 178 24 0 chr3 3300733 3300946 -214736212 - AluJo SINE Alu -86 226 9 366 315 53 107 chr3 3300987 3301362 -214735796 + L2 LINE L2 2918 3272 0 1895 196 107 11 chr3 3301764 3302046 -214735112 - MLT1D LTR MaLR 0 505 161 1801 174 13 30 chr3 3302046 3302345 -214734813 - AluJo SINE Alu -18 294 1 1895 196 107 11 chr3 3302345 3302520 -214734638 - MLT1D LTR MaLR -344 161 4 183 276 107 102 chr3 3302683 3302908 -214734250 + MIR SINE MIR 34 259 -3 22 35 0 0 chr3 3304100 3304129 -214733029 + AT_rich Low_complexity Low_complexity 1 29 0 285 296 61 17 chr3 3304607 3304722 -214732436 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 3305074 3305140 -214732018 + AT_rich Low_complexity Low_complexity 1 66 0 351 78 0 0 chr3 3305389 3305440 -214731718 + (TG)n Simple_repeat Simple_repeat 2 52 0 302 276 0 11 chr3 3305442 3305529 -214731629 - LTR67 LTR ERVL -12 545 460 293 235 43 17 chr3 3305538 3305653 -214731505 - L1ME LINE L1 -374 5747 5630 300 290 30 53 chr3 3306185 3306316 -214730842 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 3307044 3307103 -214730055 + (TA)n Simple_repeat Simple_repeat 2 60 0 618 248 53 96 chr3 3307195 3307550 -214729608 + MLT1I LTR MaLR 63 402 -7 210 296 59 89 chr3 3307559 3307694 -214729464 - MIR SINE MIR -61 147 17 393 22 0 0 chr3 3308875 3308921 -214728237 + (CA)n Simple_repeat Simple_repeat 2 47 0 384 297 65 37 chr3 3308935 3309181 -214727977 - Charlie8 DNA MER1_type -2160 257 5 305 195 26 26 chr3 3309706 3309783 -214727375 - MLT1L LTR MaLR -536 79 3 199 298 0 0 chr3 3309798 3309855 -214727303 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 3309932 3309960 -214727198 + AT_rich Low_complexity Low_complexity 1 28 0 1098 267 70 26 chr3 3309993 3310558 -214726600 - L2 LINE L2 -159 3154 2570 1818 161 7 20 chr3 3310587 3310885 -214726273 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 3310888 3310911 -214726247 + (TA)n Simple_repeat Simple_repeat 2 24 0 228 338 13 0 chr3 3312054 3312131 -214725027 - MIR SINE MIR -63 145 68 192 293 35 0 chr3 3312859 3312917 -214724241 + MIR3 SINE MIR 112 171 -37 383 301 155 14 chr3 3313630 3313849 -214723309 - MIR SINE MIR 0 262 13 203 79 26 0 chr3 3314846 3314884 -214722274 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 920 146 189 5 chr3 3315727 3315912 -214721246 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 3316075 3316098 -214721060 + AT_rich Low_complexity Low_complexity 1 23 0 2290 112 0 0 chr3 3316126 3316429 -214720729 - AluSx SINE Alu -9 303 1 329 365 0 0 chr3 3316585 3316700 -214720458 - MIR3 SINE MIR -23 185 71 276 163 0 0 chr3 3316700 3316749 -214720409 + L1MC3 LINE L1 7045 7093 -692 258 262 24 12 chr3 3316753 3316837 -214720321 + MLT1F1 LTR MaLR 40 124 -443 1930 185 74 71 chr3 3316838 3317433 -214719725 + L1MC3 LINE L1 7189 7785 0 2223 112 0 13 chr3 3318220 3318523 -214718635 - AluSx SINE Alu -13 299 1 2076 124 0 0 chr3 3319524 3319829 -214717329 + AluSx SINE Alu 1 305 0 527 281 67 12 chr3 3320243 3320407 -214716751 - MER5B DNA MER1_type 0 178 6 275 87 0 43 chr3 3321119 3321165 -214715993 + L2 LINE L2 3195 3238 -75 2177 108 3 0 chr3 3321777 3322072 -214715086 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 3322260 3322417 -214714741 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 3322525 3322553 -214714605 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 3322601 3322896 -214714262 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr3 3322973 3322994 -214714164 + AT_rich Low_complexity Low_complexity 1 21 0 2365 123 5 32 chr3 3326410 3326784 -214710374 - THE1B LTR MaLR 0 364 1 7698 127 30 8 chr3 3327113 3328425 -214708733 - Tigger1 DNA MER2_type 0 2418 1079 3374 133 107 6 chr3 3328416 3329050 -214708108 - Tigger1 DNA MER2_type -1658 760 63 * 292 211 273 19 chr3 3330902 3331063 -214706095 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 3331198 3331411 -214705747 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 3331453 3331644 -214705514 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 3331680 3332224 -214704934 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 3332495 3332521 -214704637 + AT_rich Low_complexity Low_complexity 1 26 0 383 225 36 94 chr3 3333582 3333690 -214703468 + L2 LINE L2 3182 3282 -31 2544 92 30 11 chr3 3333690 3334058 -214703100 - THE1C LTR MaLR 0 375 1 383 225 36 94 chr3 3334058 3334087 -214703071 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 3334091 3334241 -214702917 + MIR SINE MIR 34 183 -79 1676 191 40 3 chr3 3334494 3334819 -214702339 + MER1B DNA MER1_type 1 337 0 268 284 105 11 chr3 3334910 3335005 -214702153 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 3335592 3335716 -214701442 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 3335753 3335895 -214701263 - L1MC/D LINE L1 -1445 4701 4531 1914 147 18 0 chr3 3336791 3337076 -214700082 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 3337316 3337406 -214699752 + MIR SINE MIR 13 105 -157 1102 122 0 33 chr3 3340560 3340740 -214696418 + AluSg/x SINE Alu 124 297 -12 186 43 0 0 chr3 3341051 3341074 -214696084 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr3 3344095 3344126 -214693032 + AT_rich Low_complexity Low_complexity 1 31 0 428 255 135 20 chr3 3345900 3346100 -214691058 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 3346610 3346734 -214690424 - MIR3 SINE MIR -12 196 87 2465 66 0 0 chr3 3347403 3347706 -214689452 - AluY SINE Alu -8 303 1 244 376 60 8 chr3 3347816 3347933 -214689225 + L2 LINE L2 3191 3313 0 233 274 140 18 chr3 3349000 3349057 -214688101 + L1MC/D LINE L1 5352 5401 -2407 1729 149 72 0 chr3 3349057 3349333 -214687825 - AluSx SINE Alu -16 296 1 233 274 140 18 chr3 3349333 3349439 -214687719 + L1MC/D LINE L1 5401 5535 -2273 475 297 0 0 chr3 3349611 3349722 -214687436 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 3350441 3350646 -214686512 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 3350914 3351076 -214686082 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 3351378 3351524 -214685634 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 3351571 3351627 -214685531 + (TG)n Simple_repeat Simple_repeat 1 56 0 479 233 302 0 chr3 3351671 3351843 -214685315 - MIR SINE MIR -10 252 29 2303 67 35 0 chr3 3351845 3352128 -214685030 - AluY SINE Alu -18 293 1 1877 154 3 13 chr3 3352901 3353212 -214683946 + AluJb SINE Alu 1 308 -4 432 288 113 19 chr3 3353729 3353941 -214683217 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 3354127 3354408 -214682750 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 3354412 3355239 -214681919 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 3355759 3355848 -214681310 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 3355979 3356285 -214680873 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 3356638 3357144 -214680014 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 3357751 3357976 -214679182 + MER112 DNA MER1_type 4 260 0 1705 157 17 30 chr3 3359361 3359660 -214677498 - AluJb SINE Alu -17 295 1 226 229 0 0 chr3 3360172 3360233 -214676925 + T-rich Low_complexity Low_complexity 1 61 0 7634 14 0 0 chr3 3360235 3361468 -214675690 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 3361704 3361838 -214675320 + MER33 DNA MER1_type 1 145 -2440 1734 167 20 7 chr3 3361838 3362132 -214675026 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 3362132 3362347 -214674811 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 3362574 3362739 -214674419 - MER5B DNA MER1_type -1 177 11 272 375 17 0 chr3 3363034 3363154 -214674004 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 3363343 3363473 -214673685 - FRAM SINE Alu -17 159 20 558 109 148 10 chr3 3363522 3363623 -214673535 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 3363628 3363651 -214673507 + AT_rich Low_complexity Low_complexity 1 23 0 4312 90 17 21 chr3 3364122 3364316 -214672842 + PABL_A LTR ERV1 1 194 -466 2223 94 0 7 chr3 3364316 3364613 -214672545 - AluSx SINE Alu -17 295 1 4312 90 17 21 chr3 3364613 3365072 -214672086 + PABL_A LTR ERV1 194 651 -9 1772 100 37 23 chr3 3366679 3366979 -214670179 - AluSq SINE Alu -9 304 1 888 210 189 7 chr3 3367537 3367751 -214669407 + MER2 DNA MER2_type 1 283 -61 2320 94 0 0 chr3 3367751 3368050 -214669108 - AluSx SINE Alu -9 303 5 888 210 189 7 chr3 3368050 3368126 -214669032 + MER2 DNA MER2_type 283 344 0 272 70 23 0 chr3 3368126 3368169 -214668989 + (GA)n Simple_repeat Simple_repeat 1 44 0 2580 259 52 18 chr3 3368197 3369227 -214667931 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 3369329 3369614 -214667544 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 3369614 3369636 -214667522 + AT_rich Low_complexity Low_complexity 1 22 0 2461 234 26 51 chr3 3369636 3369676 -214667482 + L1ME1 LINE L1 5403 5443 -723 2069 131 7 0 chr3 3369676 3369967 -214667191 - AluSg SINE Alu -17 293 1 2461 234 26 51 chr3 3369967 3370470 -214666688 + L1ME1 LINE L1 5443 5957 -209 2198 112 0 0 chr3 3370470 3370764 -214666394 + AluSg SINE Alu 1 294 -16 2461 234 26 51 chr3 3370764 3370947 -214666211 + L1ME1 LINE L1 5957 6111 -55 1827 140 153 42 chr3 3370947 3371020 -214666138 - MSTA LTR MaLR 0 428 365 2414 49 0 30 chr3 3371020 3371325 -214665833 + AluY SINE Alu 1 296 -15 1827 140 153 42 chr3 3371325 3371636 -214665522 - MSTA LTR MaLR -63 365 1 2461 234 26 51 chr3 3371636 3371685 -214665473 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 3372151 3372446 -214664712 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 3372785 3372811 -214664347 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 3372886 3373062 -214664096 - MIR SINE MIR -32 230 32 609 178 8 0 chr3 3373402 3373520 -214663638 - MLT1D LTR MaLR 0 505 387 2271 104 0 0 chr3 3373729 3374027 -214663131 - AluSx SINE Alu -3 309 12 1549 192 3 36 chr3 3374250 3374558 -214662600 + AluJo SINE Alu 1 298 -14 870 168 0 0 chr3 3374602 3374727 -214662431 + AluJb SINE Alu 1 125 -187 1864 158 18 0 chr3 3375588 3375872 -214661286 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 3375882 3375963 -214661195 + (TA)n Simple_repeat Simple_repeat 1 84 0 217 144 22 0 chr3 3376234 3376280 -214660878 + MIR SINE MIR 99 146 -62 2014 137 0 22 chr3 3376395 3376710 -214660448 + AluSx SINE Alu 3 310 -2 4037 183 19 25 chr3 3376991 3377871 -214659287 - L1MB8 LINE L1 0 6178 5304 849 199 6 0 chr3 3377874 3378030 -214659128 - FRAM SINE Alu 0 40 1 1811 181 57 53 chr3 3378032 3378160 -214658998 - L1MB8 LINE L1 -830 5316 5190 2045 125 4 4 chr3 3378160 3378462 -214658696 - AluSx SINE Alu 0 302 1 1811 181 57 53 chr3 3378462 3378587 -214658571 - L1MB8 LINE L1 -956 5190 5067 2273 110 0 10 chr3 3378587 3378896 -214658262 + AluSx SINE Alu 6 311 -1 1811 181 57 53 chr3 3378896 3379165 -214657993 - L1MB8 LINE L1 -1079 5067 4789 248 172 16 141 chr3 3379586 3379714 -214657444 + MLT1H LTR MaLR 438 549 0 381 249 115 91 chr3 3379802 3379860 -214657298 - L1ME4a LINE L1 -232 5889 5834 1891 135 7 0 chr3 3379860 3380141 -214657017 + AluSg SINE Alu 13 295 -15 381 249 115 91 chr3 3380141 3380335 -214656823 - L1ME4a LINE L1 -287 5834 5631 2148 102 10 7 chr3 3380582 3380876 -214656282 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 3380981 3381007 -214656151 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 217 207 138 17 chr3 3381088 3381146 -214656012 + L2 LINE L2 3246 3310 -3 2240 100 0 3 chr3 3381166 3381455 -214655703 + AluSx SINE Alu 1 288 -24 268 284 0 68 chr3 3384250 3384338 -214652820 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 3385524 3385550 -214651608 + (TTG)n Simple_repeat Simple_repeat 2 27 0 257 385 57 0 chr3 3386747 3386869 -214650289 + MIR SINE MIR 21 149 -113 964 186 9 24 chr3 3388456 3388597 -214648561 + MER3 DNA MER1_type 2 141 -68 1953 143 7 7 chr3 3388597 3388884 -214648274 + AluSx SINE Alu 1 287 -25 964 186 9 24 chr3 3388884 3388952 -214648206 + MER3 DNA MER1_type 141 208 -1 269 269 86 30 chr3 3389046 3389280 -214647878 + L1ME4a LINE L1 5873 6119 -2 665 224 39 86 chr3 3389367 3389622 -214647536 + MER112 DNA MER1_type 6 248 -12 1274 124 0 43 chr3 3389753 3389939 -214647219 + AluSx SINE Alu 1 178 -134 383 246 53 18 chr3 3390602 3390716 -214646442 + MIR3 SINE MIR 14 131 -77 1871 146 35 0 chr3 3391740 3391911 -214645247 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 3391911 3391957 -214645201 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1871 146 35 0 chr3 3391957 3392073 -214645085 - AluSx SINE Alu -200 112 1 253 109 455 0 chr3 3392462 3392517 -214644641 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 3392968 3393279 -214643879 + AluSx SINE Alu 1 313 0 1918 167 0 0 chr3 3393298 3393586 -214643572 - AluJb SINE Alu -19 293 6 950 117 7 15 chr3 3393586 3393723 -214643435 - AluJb SINE Alu -176 136 1 294 320 58 19 chr3 3393881 3394037 -214643121 - MIR3 SINE MIR -8 200 39 2021 140 10 0 chr3 3394233 3394526 -214642632 + AluSx SINE Alu 1 296 -16 191 333 0 43 chr3 3395101 3395170 -214641988 - L3 LINE CR1 -4 1573 1508 1011 190 20 20 chr3 3395229 3395429 -214641729 - MER20 DNA MER1_type -19 200 1 689 222 102 9 chr3 3395869 3396085 -214641073 + MIR SINE MIR 14 249 -13 183 310 113 0 chr3 3396434 3396505 -214640653 + MIR SINE MIR 29 107 -155 2466 77 0 3 chr3 3396640 3396950 -214640208 - AluY SINE Alu -2 309 1 225 253 24 60 chr3 3397054 3397137 -214640021 - MIR SINE MIR -81 127 48 2145 116 3 16 chr3 3397925 3398235 -214638923 + AluSx SINE Alu 4 309 -3 3383 163 28 2 chr3 3398236 3398842 -214638316 + L1MB2 LINE L1 5550 6171 0 477 241 195 0 chr3 3398897 3399071 -214638087 - MIR SINE MIR -6 256 49 481 274 108 25 chr3 3399405 3399646 -214637512 - MER5C DNA MER1_type -43 281 21 196 348 38 52 chr3 3399838 3400048 -214637110 - L2 LINE L2 -544 2770 2564 247 307 44 18 chr3 3400873 3400987 -214636171 + MER69A DNA AcHobo 1 117 -60 1774 191 68 28 chr3 3400992 3401189 -214635969 - L1MD2 LINE L1 -1 6358 6170 2276 110 3 0 chr3 3401189 3401499 -214635659 - AluSx SINE Alu -1 311 1 1774 191 68 28 chr3 3401499 3401700 -214635458 - L1MD2 LINE L1 -189 6170 5944 309 245 96 11 chr3 3401700 3401794 -214635364 + MER69A DNA AcHobo 76 177 0 2556 57 0 22 chr3 3402076 3402394 -214634764 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 3402783 3402805 -214634353 + AT_rich Low_complexity Low_complexity 1 22 0 186 310 0 69 chr3 3402857 3402944 -214634214 - MIR SINE MIR -149 113 33 1899 72 103 4 chr3 3403040 3403302 -214633856 + AluSc SINE Alu 5 292 -17 263 217 0 17 chr3 3403656 3403716 -214633442 + MER91 DNA MER1_type 81 139 -1 208 235 123 0 chr3 3404601 3404682 -214632476 + MIR3 SINE MIR 102 192 -16 3399 119 12 2 chr3 3405725 3406231 -214630927 - L1PB3 LINE L1 0 6154 5644 820 84 0 19 chr3 3406271 3406378 -214630780 - FLAM_A SINE Alu -16 126 22 305 265 34 23 chr3 3408129 3408258 -214628900 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 3408708 3408878 -214628280 - MIR SINE MIR -1 261 51 1904 128 16 26 chr3 3408878 3409184 -214627974 - AluSx SINE Alu -9 303 1 201 211 0 0 chr3 3409485 3409537 -214627621 + (CA)n Simple_repeat Simple_repeat 1 52 0 231 254 140 18 chr3 3410174 3410288 -214626870 - MIR3 SINE MIR -80 128 1 1824 185 0 3 chr3 3411955 3412253 -214624905 + AluJo SINE Alu 1 297 -15 582 250 152 10 chr3 3412565 3412769 -214624389 + MIR SINE MIR 16 248 -14 1991 140 13 0 chr3 3412890 3413197 -214623961 - AluSx SINE Alu -1 311 1 240 234 261 0 chr3 3413300 3413411 -214623747 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 3413512 3413750 -214623408 - L2 LINE L2 -825 2489 2232 2320 106 0 3 chr3 3414097 3414399 -214622759 - AluSx SINE Alu -11 301 1 320 316 18 9 chr3 3414895 3415009 -214622149 + L2 LINE L2 3158 3272 0 1903 145 3 3 chr3 3415183 3415465 -214621693 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 3415539 3415649 -214621509 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 3416101 3416239 -214620919 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 3417053 3417346 -214619812 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 3417448 3417747 -214619411 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 3418331 3418461 -214618697 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 3418544 3418701 -214618457 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 3418859 3419366 -214617792 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 3419384 3419599 -214617559 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 3420027 3420313 -214616845 - AluSx SINE Alu -18 294 1 1697 195 7 0 chr3 3421061 3421353 -214615805 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr3 3421354 3421378 -214615780 + (CA)n Simple_repeat Simple_repeat 2 25 0 680 149 79 0 chr3 3421474 3421588 -214615570 - FLAM_C SINE Alu -19 124 2 201 386 30 0 chr3 3421702 3421803 -214615355 + L2 LINE L2 3169 3272 0 257 267 150 0 chr3 3421868 3421988 -214615170 + L1ME LINE L1 5705 5842 -279 2520 87 0 0 chr3 3422050 3422359 -214614799 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr3 3422520 3422542 -214614616 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 3423274 3423304 -214613854 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 3424320 3424645 -214612513 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 3424681 3424844 -214612314 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3425244 3425545 -214611613 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3426672 3426768 -214610390 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3427147 3427443 -214609715 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3428069 3428366 -214608792 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3428366 3428559 -214608599 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3428810 3428928 -214608230 + L2 LINE L2 3170 3303 -10 2349 98 7 0 chr3 3429198 3429505 -214607653 + AluSp SINE Alu 1 309 -4 537 188 240 19 chr3 3429765 3429919 -214607239 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 3430097 3430130 -214607028 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 3430168 3430311 -214606847 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 3430461 3430528 -214606630 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 3430797 3431102 -214606056 - AluSg SINE Alu -5 305 1 449 222 104 22 chr3 3433850 3433985 -214603173 - L2 LINE L2 -5 3267 3122 2119 90 54 0 chr3 3434352 3434630 -214602528 + AluSq SINE Alu 1 293 -20 24 96 0 0 chr3 3436374 3436447 -214600711 + AT_rich Low_complexity Low_complexity 1 73 0 521 275 6 25 chr3 3437182 3437342 -214599816 - MIR SINE MIR -72 190 34 322 295 25 0 chr3 3437937 3438059 -214599099 + L2 LINE L2 2199 2323 -991 872 225 69 23 chr3 3438069 3438331 -214598827 - L1MB4 LINE L1 0 6180 5907 303 250 70 20 chr3 3439496 3439596 -214597562 + MIR SINE MIR 81 185 -77 2038 140 7 0 chr3 3439605 3439905 -214597253 + AluSx SINE Alu 1 302 -10 245 246 33 0 chr3 3440438 3440499 -214596659 - MER5B DNA MER1_type 0 178 116 702 191 112 27 chr3 3440536 3440724 -214596434 + MER20 DNA MER1_type 16 219 0 1135 178 28 0 chr3 3440848 3441028 -214596130 - MER5A DNA MER1_type -2 187 3 1687 112 31 5 chr3 3441767 3441991 -214595167 + MER30 DNA MER1_type 1 230 0 613 255 28 0 chr3 3442009 3442154 -214595004 - MIR SINE MIR -87 175 27 181 286 71 51 chr3 3442145 3442156 -214595002 + MIR SINE MIR 27 36 -226 * 2360 99 3 0 chr3 3442156 3442458 -214594700 - AluSq SINE Alu -10 303 1 181 286 71 51 chr3 3442458 3442544 -214594614 + MIR SINE MIR 36 126 -136 620 248 62 6 chr3 3442578 3442739 -214594419 + Charlie8 DNA MER1_type 11 180 -2237 540 208 53 52 chr3 3442740 3442916 -214594242 + MSTC LTR MaLR 1 180 -185 277 126 24 0 chr3 3442915 3442976 -214594182 + MSTB2 LTR MaLR 308 431 -26 * 298 280 156 53 chr3 3443141 3443366 -214593792 + L2 LINE L2 2916 3163 -150 606 252 63 15 chr3 3443387 3443557 -214593601 + MIR SINE MIR 13 196 -66 2223 120 0 0 chr3 3443557 3443858 -214593300 + AluSx SINE Alu 1 301 -11 606 252 63 15 chr3 3443858 3443893 -214593265 + MIR SINE MIR 196 228 -34 278 149 21 0 chr3 3443930 3443977 -214593181 + Charlie8 DNA MER1_type 1375 1422 -995 357 62 0 0 chr3 3444373 3444421 -214592737 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr3 3444420 3444446 -214592712 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1225 222 108 7 chr3 3444456 3444753 -214592405 + MER2 DNA MER2_type 6 332 -13 25759 64 4 9 chr3 3444983 3448304 -214588854 - L1P LINE L1 -2831 3315 11 609 239 119 26 chr3 3448323 3448661 -214588497 + MLT1G LTR MaLR 153 588 -2 1775 152 20 10 chr3 3450962 3451258 -214585900 - AluJo SINE Alu -13 299 1 270 185 174 0 chr3 3451272 3451364 -214585794 - MER113 DNA MER1_type? -410 111 4 293 347 41 0 chr3 3451367 3451488 -214585670 - MIR3 SINE MIR -52 156 31 2240 91 3 3 chr3 3451995 3452282 -214584876 - AluSp SINE Alu -15 298 12 227 261 54 43 chr3 3454607 3454699 -214582459 + MIR SINE MIR 103 195 -67 1824 150 0 43 chr3 3456131 3456457 -214580701 - AluJb SINE Alu 0 312 1 180 200 0 60 chr3 3456475 3456525 -214580633 - MIR SINE MIR -106 156 110 1821 147 14 7 chr3 3457082 3457368 -214579790 + AluJo SINE Alu 1 288 -24 24 32 0 0 chr3 3457541 3457572 -214579586 + AT_rich Low_complexity Low_complexity 1 31 0 1968 144 7 0 chr3 3457612 3457911 -214579247 - AluJb SINE Alu -11 301 1 418 353 39 7 chr3 3458416 3458569 -214578589 - L2 LINE L2 0 3272 3115 282 311 49 8 chr3 3458617 3458739 -214578419 - L2 LINE L2 0 3313 3187 963 233 69 25 chr3 3463043 3463288 -214573870 - MIR SINE MIR 0 262 7 199 331 67 18 chr3 3463431 3463595 -214573563 + MIR SINE MIR 23 192 -67 216 285 89 32 chr3 3463818 3463885 -214573273 + MIR SINE MIR 132 194 -68 1420 186 0 36 chr3 3463885 3464133 -214573025 + MER8 DNA MER2_type 1 239 0 216 285 89 32 chr3 3464133 3464188 -214572970 + MIR SINE MIR 194 261 -1 825 211 35 30 chr3 3465545 3465744 -214571414 + MER105 DNA DNA 1 200 -4 225 327 71 9 chr3 3466326 3466460 -214570698 + MIR SINE MIR 37 177 -70 335 217 105 28 chr3 3467251 3467394 -214569764 - L1ME4a LINE L1 -1 6120 5967 23 33 0 0 chr3 3467588 3467618 -214569540 + AT_rich Low_complexity Low_complexity 1 30 0 206 238 16 0 chr3 3467931 3467994 -214569164 + (CAAAC)n Simple_repeat Simple_repeat 1 64 0 207 0 0 0 chr3 3468531 3468554 -214568604 + (T)n Simple_repeat Simple_repeat 1 23 0 423 168 140 19 chr3 3468900 3469007 -214568151 - MIR SINE MIR -40 222 103 1379 186 50 47 chr3 3470518 3470674 -214566484 - AluJo SINE Alu -10 302 143 1562 186 0 62 chr3 3470674 3470997 -214566161 - AluSx SINE Alu -9 303 1 1379 186 50 47 chr3 3470997 3471141 -214566017 - AluJo SINE Alu -169 143 1 1554 292 179 16 chr3 3471565 3472371 -214564787 + L3 LINE CR1 552 1488 -89 465 220 60 22 chr3 3472953 3473097 -214564061 - L1MD3 LINE L1 -1 8040 7880 246 111 0 0 chr3 3473102 3473147 -214564011 + LTR66 LTR ERVL 395 439 -171 239 109 0 0 chr3 3473141 3473187 -214563971 - LTR66 LTR ERVL -171 439 394 * 252 200 0 0 chr3 3473206 3473266 -214563892 + (CA)n Simple_repeat Simple_repeat 1 60 0 2703 231 46 34 chr3 3473274 3473344 -214563814 - L1MC4 LINE L1 -682 7360 7292 1814 153 43 10 chr3 3473344 3473645 -214563513 + AluSx SINE Alu 1 311 -1 2703 231 46 34 chr3 3473645 3474288 -214562870 - L1MC4 LINE L1 -750 7292 6638 289 206 29 49 chr3 3475076 3475178 -214561980 - L1MEd LINE L1 -5354 765 666 360 0 0 0 chr3 3478851 3478891 -214558267 + (TG)n Simple_repeat Simple_repeat 2 41 0 317 320 28 56 chr3 3479631 3479809 -214557349 + MIR SINE MIR 46 218 -44 2224 118 3 0 chr3 3479948 3480252 -214556906 - AluSq SINE Alu -8 305 1 1562 127 0 5 chr3 3480274 3480495 -214556663 + AluSg/x SINE Alu 87 306 -6 218 260 0 0 chr3 3480515 3480565 -214556593 + MIR SINE MIR 213 262 0 291 224 0 15 chr3 3480588 3480655 -214556503 + L2 LINE L2 2750 2815 -499 336 343 0 10 chr3 3480817 3480916 -214556242 + MIR SINE MIR 13 110 -152 306 153 0 0 chr3 3481002 3481061 -214556097 + (CAT)n Simple_repeat Simple_repeat 2 60 0 1517 278 157 41 chr3 3482467 3483206 -214553952 + HAL1 LINE L1 85 949 -1558 2579 34 0 0 chr3 3483206 3483501 -214553657 + AluY SINE Alu 1 295 -16 1517 278 157 41 chr3 3483501 3483664 -214553494 + HAL1 LINE L1 949 1092 -1415 490 88 25 38 chr3 3484108 3484188 -214552970 - MADE1 DNA Mariner 0 80 2 196 301 68 45 chr3 3486119 3486252 -214550906 - MIR SINE MIR -118 144 9 239 286 164 35 chr3 3486579 3486750 -214550408 - L2 LINE L2 -1 3312 3120 2226 62 42 10 chr3 3486763 3487051 -214550107 + AluY SINE Alu 1 297 -14 1496 166 16 55 chr3 3487087 3487394 -214549764 + MLT1A1 LTR MaLR 13 307 -58 1727 190 11 39 chr3 3487402 3487793 -214549365 + MLT-int LTR MaLR 316 709 -662 351 179 15 15 chr3 3487900 3487967 -214549191 + MLT-int LTR MaLR 676 742 -993 269 266 273 7 chr3 3488262 3488416 -214548742 - MIR SINE MIR -65 197 3 2668 136 4 87 chr3 3488824 3488879 -214548279 - L1MB7 LINE L1 -19 6165 6107 1956 142 0 32 chr3 3488879 3489188 -214547970 + AluJb SINE Alu 1 299 -13 2668 136 4 87 chr3 3489188 3489216 -214547942 - L1MB7 LINE L1 -77 6107 6078 309 26 0 0 chr3 3489216 3489254 -214547904 + (T)n Simple_repeat Simple_repeat 1 38 0 2668 136 4 87 chr3 3489254 3489662 -214547496 - L1MB7 LINE L1 -106 6078 5680 274 277 36 24 chr3 3490232 3490315 -214546843 - MIR3 SINE MIR -3 205 122 209 171 0 0 chr3 3490480 3490515 -214546643 + CT-rich Low_complexity Low_complexity 2 36 0 198 103 0 0 chr3 3492043 3492072 -214545086 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 192 354 21 42 chr3 3492262 3492358 -214544800 - L3 LINE CR1 -20 1557 1464 760 298 188 51 chr3 3492391 3493115 -214544043 - L3 LINE CR1 -184 1393 543 1129 158 50 180 chr3 3493115 3493532 -214543626 + MLT1A1 LTR MaLR 3 365 0 760 298 188 51 chr3 3493532 3493628 -214543530 - L3 LINE CR1 -1034 543 461 247 364 19 31 chr3 3494206 3494368 -214542790 + L2 LINE L2 2897 3056 -216 575 310 6 18 chr3 3494444 3494615 -214542543 - MER5A DNA MER1_type -5 184 16 202 232 24 24 chr3 3496880 3496962 -214540196 + (TTATA)n Simple_repeat Simple_repeat 2 83 0 291 324 94 25 chr3 3496980 3497292 -214539866 - L1ME LINE L1 -392 5729 5395 261 83 0 0 chr3 3498313 3498349 -214538809 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr3 3498571 3498599 -214538559 + AT_rich Low_complexity Low_complexity 1 28 0 369 161 49 0 chr3 3499251 3499332 -214537826 - MER58 DNA MER1_type -16 2404 2320 2260 95 0 7 chr3 3499347 3499643 -214537515 + AluSq SINE Alu 5 298 -15 1113 208 47 7 chr3 3499643 3499912 -214537246 - MER58 DNA MER1_type -61 280 1 335 308 23 39 chr3 3499922 3500052 -214537106 - MER5A DNA MER1_type -5 184 57 331 224 112 43 chr3 3501853 3502014 -214535144 + MER113 DNA MER1_type? 4 175 -346 21 0 0 0 chr3 3502047 3502068 -214535090 + AT_rich Low_complexity Low_complexity 1 21 0 193 284 60 0 chr3 3502690 3502757 -214534401 - MIR SINE MIR -26 236 166 515 271 202 10 chr3 3502782 3502985 -214534173 - MIR SINE MIR -10 252 11 254 240 280 27 chr3 3503589 3503739 -214533419 + MIR3 SINE MIR 10 197 -11 786 313 75 30 chr3 3505469 3506145 -214531013 + L2 LINE L2 2601 3306 -7 341 398 29 5 chr3 3506486 3506692 -214530466 + MIR SINE MIR 28 238 -24 2097 146 0 0 chr3 3506728 3507030 -214530128 + AluJb SINE Alu 1 302 -10 233 351 26 0 chr3 3508313 3508390 -214528768 + MIR SINE MIR 28 106 -156 854 198 99 15 chr3 3508404 3508606 -214528552 - MER20 DNA MER1_type 0 219 1 23 68 0 0 chr3 3508850 3508894 -214528264 + AT_rich Low_complexity Low_complexity 1 44 0 906 241 97 28 chr3 3509160 3509376 -214527782 + MIR SINE MIR 2 232 -30 2614 48 3 0 chr3 3509698 3510007 -214527151 - AluY SINE Alu 0 311 2 694 291 135 35 chr3 3510202 3510549 -214526609 + MLT1K LTR MaLR 134 515 -73 1779 156 28 3 chr3 3510890 3511179 -214525979 - AluSx SINE Alu -16 296 1 3148 135 23 72 chr3 3511414 3511478 -214525680 + LTR9 LTR ERV1 1 67 -545 2512 50 0 0 chr3 3511478 3511779 -214525379 - AluY SINE Alu -10 301 1 3148 135 23 72 chr3 3511779 3512357 -214524801 + LTR9 LTR ERV1 67 612 0 336 333 8 0 chr3 3513360 3513483 -214523675 - Tigger8 DNA MER2_type -13 653 530 2619 153 109 27 chr3 3513510 3514071 -214523087 + LTR36 LTR ERV1 1 607 -4 481 315 35 0 chr3 3514353 3514585 -214522573 + MER102b DNA MER1_type 102 341 0 1555 205 58 54 chr3 3514749 3515212 -214521946 - MLT1C LTR MaLR -1 466 2 534 325 73 17 chr3 3517392 3517626 -214519532 - MIR SINE MIR -14 248 2 454 273 66 50 chr3 3518353 3518551 -214518607 + MIR SINE MIR 41 241 -21 777 266 92 17 chr3 3518658 3519015 -214518143 + MER113 DNA MER1_type? 136 519 -2 243 175 0 0 chr3 3520584 3520641 -214516517 + (TG)n Simple_repeat Simple_repeat 1 57 0 304 148 49 37 chr3 3521582 3521631 -214515527 + L1MC4 LINE L1 6616 6663 -1379 1695 113 118 136 chr3 3521631 3521855 -214515303 + Tigger2a DNA MER2_type 1 228 -2480 2175 117 3 0 chr3 3521855 3522154 -214515004 + AluSx SINE Alu 1 300 -12 1695 113 118 136 chr3 3522154 3522196 -214514962 + Tigger2a DNA MER2_type 228 269 -2439 1779 159 10 17 chr3 3522196 3522492 -214514666 + AluJb SINE Alu 1 294 -18 1695 113 118 136 chr3 3522492 3522551 -214514607 + Tigger2a DNA MER2_type 269 328 -2380 1596 183 7 18 chr3 3522551 3522830 -214514328 + AluJo SINE Alu 7 282 -30 233 29 0 29 chr3 3522836 3522871 -214514287 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1695 113 118 136 chr3 3522871 3522978 -214514180 + Tigger2a DNA MER2_type 333 434 0 304 148 49 37 chr3 3522978 3523009 -214514149 + L1MC4 LINE L1 6663 6697 -1345 212 313 0 38 chr3 3523239 3523319 -214513839 - L2 LINE L2 -7 3265 3189 966 280 56 41 chr3 3523352 3523401 -214513757 + MLT1K LTR MaLR 3 50 -538 216 0 0 0 chr3 3523401 3523425 -214513733 + (TAA)n Simple_repeat Simple_repeat 2 25 0 966 280 56 41 chr3 3523425 3523768 -214513390 + MLT1K LTR MaLR 50 401 -187 444 174 0 83 chr3 3523795 3523850 -214513308 + MLT1K LTR MaLR 478 519 -69 527 185 0 22 chr3 3523850 3523985 -214513173 + L1MB8 LINE L1 6046 6177 -1 444 174 0 83 chr3 3523985 3524050 -214513108 + MLT1K LTR MaLR 519 588 0 228 67 0 0 chr3 3524289 3524319 -214512839 + (TGG)n Simple_repeat Simple_repeat 1 30 0 4073 113 5 70 chr3 3525261 3525999 -214511159 + LTR8 LTR ERV1 2 691 0 2099 177 37 0 chr3 3526165 3526567 -214510591 - L1MA3 LINE L1 -2 6303 5887 228 350 133 21 chr3 3527155 3527389 -214509769 - L2 LINE L2 -450 2864 2605 842 203 35 5 chr3 3527393 3527590 -214509568 - MER3 DNA MER1_type -4 205 3 213 296 159 0 chr3 3527945 3528033 -214509125 + L2 LINE L2 3212 3313 0 187 367 17 0 chr3 3528108 3528168 -214508990 + MIR SINE MIR 78 138 -70 418 290 168 0 chr3 3528298 3528453 -214508705 + MER5A DNA MER1_type 9 189 0 508 254 56 0 chr3 3528867 3528993 -214508165 - L2 LINE L2 -3 3310 3178 1006 277 80 58 chr3 3529018 3529516 -214507642 - L2 LINE L2 0 3313 2805 642 309 57 0 chr3 3529812 3530006 -214507152 + L3 LINE CR1 914 1118 -459 255 284 20 20 chr3 3530436 3530538 -214506620 + LTR67 LTR ERVL 449 550 -7 307 202 46 46 chr3 3531527 3531636 -214505522 - MLT1H LTR MaLR 0 549 441 2661 33 0 0 chr3 3531689 3531990 -214505168 - AluY SINE Alu -9 302 2 27 0 0 0 chr3 3533358 3533385 -214503773 + AT_rich Low_complexity Low_complexity 1 27 0 3195 167 13 0 chr3 3534951 3535503 -214501655 + L1PA16 LINE L1 5607 6165 -1 3959 153 27 6 chr3 3535503 3536321 -214500837 + L1MA9 LINE L1 5356 6290 -22 3319 172 30 6 chr3 3536466 3537123 -214500035 - L1MB3 LINE L1 -2 6181 5509 595 339 68 24 chr3 3537165 3537534 -214499624 + MLT1K LTR MaLR 24 408 -180 212 193 70 35 chr3 3539020 3539077 -214498081 + L2 LINE L2 3255 3313 0 811 325 83 32 chr3 3539188 3539715 -214497443 - L2 LINE L2 -938 2376 1823 338 367 80 15 chr3 3539846 3540045 -214497113 + MIR SINE MIR 32 243 -19 180 194 194 0 chr3 3540554 3540590 -214496568 - MIR SINE MIR -102 106 64 2023 130 14 43 chr3 3541399 3541746 -214495412 + MER1B DNA MER1_type 1 337 0 519 237 101 0 chr3 3541821 3541960 -214495198 - MIR SINE MIR -38 224 72 437 319 14 28 chr3 3541958 3542102 -214495056 - L2 LINE L2 -4 3309 3168 * 658 313 70 10 chr3 3543653 3543984 -214493174 - L2 LINE L2 -218 3095 2740 599 185 110 153 chr3 3544063 3544409 -214492749 - MER46C DNA MER2_type -6 332 2 537 308 49 57 chr3 3545649 3545933 -214491225 - Charlie8 DNA MER1_type -1964 453 171 1875 170 3 10 chr3 3545933 3546245 -214490913 + AluJo SINE Alu 1 310 -2 537 308 49 57 chr3 3546245 3546346 -214490812 - Charlie8 DNA MER1_type -2246 171 71 187 130 22 22 chr3 3547297 3547343 -214489815 + CT-rich Low_complexity Low_complexity 4 49 0 684 333 40 17 chr3 3547842 3548193 -214488965 + LTR16A LTR ERVL 86 444 -6 1848 110 0 0 chr3 3549062 3549307 -214487851 + AluSc SINE Alu 46 290 -19 279 71 0 0 chr3 3549307 3549349 -214487809 + (TA)n Simple_repeat Simple_repeat 2 43 0 276 194 250 8 chr3 3550096 3550220 -214486938 - MER103 DNA DNA -11 155 2 368 277 69 31 chr3 3550771 3550901 -214486257 - L2 LINE L2 -1 3271 3137 634 314 206 31 chr3 3551182 3551768 -214485390 - L2 LINE L2 -589 2725 2037 528 249 76 15 chr3 3552930 3553127 -214484031 + MER63A DNA MER1_type 2 210 0 436 295 18 48 chr3 3554406 3554572 -214482586 + MIR SINE MIR 36 196 -66 1434 208 20 35 chr3 3555895 3556241 -214480917 - MER58B DNA MER1_type 0 341 1 369 362 22 26 chr3 3556244 3556473 -214480685 - L2 LINE L2 -342 2972 2745 343 344 38 13 chr3 3556477 3556634 -214480524 - MER5A DNA MER1_type -5 184 24 199 260 19 115 chr3 3557440 3557544 -214479614 - L2 LINE L2 -656 2658 2565 513 126 54 18 chr3 3559344 3559455 -214477703 + MER4C LTR ERV1 2 116 -349 458 231 41 123 chr3 3559513 3559817 -214477341 + MER4C LTR ERV1 125 232 -233 2319 61 0 0 chr3 3559817 3560138 -214477020 + AluY SINE Alu 1 321 0 458 231 41 123 chr3 3560138 3560347 -214476811 + MER4C LTR ERV1 232 457 -8 914 173 62 6 chr3 3560353 3560532 -214476626 + MLT1D LTR MaLR 257 445 -60 2521 59 0 3 chr3 3560537 3560843 -214476315 - AluY SINE Alu -6 305 1 302 256 84 116 chr3 3560920 3560991 -214476167 - L2 LINE L2 -94 3219 3147 1587 195 30 10 chr3 3560991 3561117 -214476041 + AluJo SINE Alu 1 123 -189 213 39 0 0 chr3 3561117 3561143 -214476015 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 1587 195 30 10 chr3 3561143 3561314 -214475844 + AluJo SINE Alu 123 304 -8 302 256 84 116 chr3 3561314 3561457 -214475701 - L2 LINE L2 -166 3147 3012 354 347 68 46 chr3 3561468 3561972 -214475186 + L2 LINE L2 2301 2815 -499 518 277 40 0 chr3 3563040 3563188 -214473970 + MLT1K LTR MaLR 23 176 -412 695 261 43 34 chr3 3563233 3563467 -214473691 + MLT1K LTR MaLR 342 577 -11 473 241 135 7 chr3 3564749 3564890 -214472268 + Charlie8 DNA MER1_type 88 246 -2171 968 229 129 25 chr3 3565369 3565732 -214471426 + MLT1I LTR MaLR 5 405 -4 373 305 58 29 chr3 3566723 3566897 -214470261 + L3 LINE CR1 1209 1387 -190 2040 110 28 3 chr3 3567375 3567666 -214469492 - AluSc SINE Alu -10 299 2 320 215 168 9 chr3 3567773 3567880 -214469278 - L1ME3 LINE L1 -8 6154 6031 208 258 186 31 chr3 3568103 3568200 -214468958 + L2 LINE L2 3175 3286 -27 2257 103 7 0 chr3 3570030 3570332 -214466826 + AluSx SINE Alu 1 304 -8 1663 188 11 7 chr3 3571604 3571891 -214465267 + AluJo SINE Alu 1 288 -24 268 250 0 98 chr3 3572151 3572243 -214464915 + MIR SINE MIR 164 246 -16 645 231 20 138 chr3 3572360 3572707 -214464451 - L1MD1 LINE L1 -10 6232 5927 300 328 61 15 chr3 3573405 3573536 -214463622 + L2 LINE L2 3176 3312 -1 2214 114 3 29 chr3 3573563 3573879 -214463279 - AluSx SINE Alu -4 308 1 822 174 28 90 chr3 3574225 3574437 -214462721 + MER63A DNA MER1_type 4 202 -8 500 290 168 0 chr3 3575378 3575533 -214461625 + MER5A DNA MER1_type 9 189 0 5096 66 21 27 chr3 3575585 3576745 -214460413 + SVA Other Other 2 1386 0 2436 186 58 9 chr3 3576753 3577292 -214459866 - L1MB2 LINE L1 -16 6155 5591 876 131 11 60 chr3 3577308 3577491 -214459667 + L1 LINE L1 4026 4199 -1947 * 5210 276 41 36 chr3 3577489 3577574 -214459584 - L1 LINE L1 -2129 3841 3758 2019 117 38 0 chr3 3577574 3577865 -214459293 + AluSx SINE Alu 1 302 -10 5210 276 41 36 chr3 3577865 3579760 -214457398 - L1 LINE L1 -2212 3758 1831 2194 126 0 7 chr3 3579760 3580070 -214457088 - AluSx SINE Alu -4 308 1 5210 276 41 36 chr3 3580070 3581488 -214455670 - L1 LINE L1 -4139 1831 421 554 292 118 55 chr3 3581793 3582122 -214455036 - L1 LINE L1 -5541 350 1 875 225 16 0 chr3 3583041 3583223 -214453935 + MER5A DNA MER1_type 2 186 -3 552 256 35 12 chr3 3583269 3583441 -214453717 - MER5B DNA MER1_type 0 178 3 710 264 50 14 chr3 3584320 3584540 -214452618 + LTR16A1 LTR ERVL 208 435 -22 2167 125 7 0 chr3 3585354 3585649 -214451509 - AluSx SINE Alu -15 297 1 2256 104 0 19 chr3 3586067 3586384 -214450774 - AluSq SINE Alu -2 311 1 27 0 0 0 chr3 3586440 3586467 -214450691 + AT_rich Low_complexity Low_complexity 1 27 0 2275 181 36 23 chr3 3586468 3586997 -214450161 - L1MA8 LINE L1 -4 6287 5752 1612 192 13 55 chr3 3587315 3587695 -214449463 + MLT1A1 LTR MaLR 1 364 -1 456 327 67 73 chr3 3589041 3589506 -214447652 - L2 LINE L2 -3 3269 2808 2040 201 57 9 chr3 3590885 3591324 -214445834 + LOR1b LTR ERV1 2 461 0 518 278 68 68 chr3 3592623 3593005 -214444153 + MLT1J1 LTR MaLR 65 446 0 1854 131 95 24 chr3 3595083 3595420 -214441738 + MER46B DNA MER2_type 1 236 0 208 215 0 46 chr3 3596175 3596240 -214440918 + L2 LINE L2 2201 2262 -1052 2358 76 3 0 chr3 3596885 3597187 -214439971 - AluY SINE Alu -8 303 1 1786 135 90 0 chr3 3597664 3597931 -214439227 + AluSx SINE Alu 1 291 -21 198 285 180 47 chr3 3598373 3598545 -214438613 - MIR SINE MIR -47 215 21 1515 189 40 15 chr3 3598678 3599079 -214438079 + Charlie1 DNA MER1_type 2343 2753 -8 341 336 79 21 chr3 3600009 3600149 -214437009 + MIR3 SINE MIR 58 205 -3 793 189 5 121 chr3 3600590 3600796 -214436362 + MER5A DNA MER1_type 7 188 -1 271 307 45 11 chr3 3600805 3600893 -214436265 + MIR SINE MIR 53 143 -119 1149 297 88 26 chr3 3600910 3601471 -214435687 + L2 LINE L2 2502 3127 -186 1734 128 75 11 chr3 3601471 3601758 -214435400 - AluSx SINE Alu 0 304 1 1149 297 88 26 chr3 3601758 3601958 -214435200 + L2 LINE L2 3127 3313 0 281 26 0 26 chr3 3607209 3607248 -214429910 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 345 25 49 chr3 3607966 3608169 -214428989 + MIR SINE MIR 21 218 -44 2250 121 0 0 chr3 3608308 3608613 -214428545 - AluSp SINE Alu -8 305 1 848 202 91 0 chr3 3608616 3608814 -214428344 - L1MD2 LINE L1 -200 6159 5944 279 245 96 11 chr3 3608814 3608908 -214428250 + MER69 DNA AcHobo 2425 2526 0 2523 53 0 22 chr3 3609190 3609508 -214427650 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 3609690 3609832 -214427326 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 3609898 3609920 -214427238 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 3609955 3610084 -214427074 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 3610155 3610417 -214426741 + AluSc SINE Alu 5 292 -17 280 217 0 17 chr3 3610771 3610831 -214426327 + MER91 DNA MER1_type 81 139 -1 2507 52 3 0 chr3 3663265 3663574 -214373584 + AluY SINE Alu 1 310 -1 186 0 28 56 chr3 3663742 3663778 -214373380 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 415 344 56 25 chr3 3663920 3664307 -214372851 - L2 LINE L2 -209 3104 2612 * 1036 328 142 39 chr3 3664280 3665293 -214371865 + L3 LINE CR1 394 1511 -66 439 294 79 99 chr3 3665652 3666186 -214370972 - L2 LINE L2 -457 2857 2335 407 303 0 0 chr3 3666191 3666310 -214370848 + MER94 DNA DNA 16 134 0 427 279 146 84 chr3 3666325 3666921 -214370237 - L2 LINE L2 -1020 2294 1662 465 354 40 5 chr3 3667272 3667470 -214369688 - MIR SINE MIR -27 235 31 23 33 0 0 chr3 3669268 3669298 -214367860 + AT_rich Low_complexity Low_complexity 1 30 0 271 377 39 8 chr3 3670675 3670805 -214366353 + MIR3 SINE MIR 2 135 -73 901 220 10 0 chr3 3670811 3671011 -214366147 + MER3 DNA MER1_type 3 204 -5 1555 192 44 49 chr3 3671679 3672085 -214365073 - MER21B LTR ERV1 -57 806 403 337 298 0 19 chr3 3673309 3673413 -214363745 + MIR SINE MIR 48 149 -113 31 0 0 0 chr3 3673756 3673787 -214363371 + AT_rich Low_complexity Low_complexity 1 31 0 2335 66 3 7 chr3 3673832 3674136 -214363022 - AluY SINE Alu -4 307 5 384 278 61 0 chr3 3675057 3675172 -214361986 - MIR SINE MIR -59 203 82 2171 103 0 0 chr3 3676324 3676636 -214360522 + AluSg SINE Alu 1 312 0 559 200 42 18 chr3 3677103 3677268 -214359890 - MLT1A1 LTR MaLR -196 169 1 225 94 0 0 chr3 3678444 3678476 -214358682 + (CCA)n Simple_repeat Simple_repeat 1 32 0 183 80 0 0 chr3 3678696 3678721 -214358437 + (T)n Simple_repeat Simple_repeat 1 25 0 1716 167 0 33 chr3 3679103 3679408 -214357750 + AluJb SINE Alu 7 301 -11 674 306 51 4 chr3 3682955 3683190 -214353968 + MIR SINE MIR 9 254 -8 220 0 86 0 chr3 3683307 3683342 -214353816 + A-rich Low_complexity Low_complexity 2 39 0 1995 66 44 0 chr3 3683618 3683890 -214353268 - L1PA13 LINE L1 -19 6144 5861 2153 110 3 7 chr3 3683926 3684225 -214352933 + AluSx SINE Alu 1 298 -14 978 82 0 15 chr3 3684279 3684439 -214352719 + AluY SINE Alu 150 307 0 1044 113 0 0 chr3 3684539 3684681 -214352477 - THE1C LTR MaLR -233 142 1 423 224 96 8 chr3 3684682 3684807 -214352351 + MER103 DNA DNA 31 166 0 191 235 123 12 chr3 3685079 3685160 -214351998 + MIR SINE MIR 96 185 -77 28 53 0 40 chr3 3685371 3685446 -214351712 + AT_rich Low_complexity Low_complexity 1 72 0 23 68 0 0 chr3 3685773 3685817 -214351341 + AT_rich Low_complexity Low_complexity 1 44 0 2695 297 100 32 chr3 3686561 3686974 -214350184 - L2 LINE L2 -160 3153 2769 2148 154 83 8 chr3 3686974 3687371 -214349787 - MSTA LTR MaLR 0 428 2 2695 297 100 32 chr3 3687371 3688390 -214348768 - L2 LINE L2 -544 2769 1635 210 343 126 40 chr3 3688496 3688694 -214348464 + L2 LINE L2 2591 2805 -509 235 311 14 14 chr3 3689895 3689969 -214347189 - MIR SINE MIR -116 92 19 2490 46 7 0 chr3 3690034 3690341 -214346817 - AluY SINE Alu -2 309 1 221 116 0 23 chr3 3690355 3690398 -214346760 + (GGAGAA)n Simple_repeat Simple_repeat 3 44 0 1874 129 46 16 chr3 3693286 3693589 -214343569 - AluSx SINE Alu 0 312 1 568 234 22 7 chr3 3694437 3694574 -214342584 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3695657 3695726 -214341432 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3695727 3695808 -214341350 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3695888 3695952 -214341206 + MIR3 SINE MIR 98 161 -47 449 248 47 16 chr3 3696591 3696720 -214340438 - MER94 DNA DNA -1 133 1 2411 129 89 65 chr3 3697738 3697791 -214339367 + MER34 LTR ERV1 1 51 -491 1696 164 0 14 chr3 3697791 3698097 -214339061 - AluJo SINE Alu 0 302 1 2411 129 89 65 chr3 3698097 3698568 -214338590 + MER34 LTR ERV1 51 539 -3 349 293 67 7 chr3 3698611 3698761 -214338397 - L1ME3A LINE L1 -233 5920 5762 645 285 65 19 chr3 3698805 3699499 -214337659 - L1ME3A LINE L1 -536 5609 4884 522 278 109 24 chr3 3699612 3700259 -214336899 - L1MEd LINE L1 -4596 1714 971 314 363 64 58 chr3 3700334 3700711 -214336447 - L1MEd LINE L1 -5737 382 4 1990 146 0 0 chr3 3700791 3701085 -214336073 + AluSx SINE Alu 1 294 -18 565 196 0 0 chr3 3701088 3701180 -214335978 + AluS SINE Alu 1 92 -220 1500 120 43 0 chr3 3701281 3701529 -214335629 + AluSg/x SINE Alu 66 322 0 2288 91 3 0 chr3 3701539 3701824 -214335334 + AluSp SINE Alu 3 288 -25 226 0 59 0 chr3 3701833 3701867 -214335291 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 200 219 0 0 chr3 3702627 3702668 -214334490 - MER5C DNA MER1_type -6 318 278 323 224 37 112 chr3 3702813 3702947 -214334211 - MER5C DNA MER1_type -200 124 1 218 324 63 63 chr3 3703176 3703287 -214333871 + L2 LINE L2 3141 3251 -21 270 300 129 36 chr3 3703762 3703902 -214333256 + MIR3 SINE MIR 6 158 -50 1537 177 7 14 chr3 3703938 3704250 -214332908 + AluJo SINE Alu 1 310 0 2183 113 0 7 chr3 3704466 3704767 -214332391 + AluSg SINE Alu 1 299 -11 435 281 117 18 chr3 3705899 3706070 -214331088 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chr3 3707159 3707182 -214329976 + AT_rich Low_complexity Low_complexity 1 23 0 1712 122 90 41 chr3 3707859 3708202 -214328956 + MER46B DNA MER2_type 1 235 -1 305 279 108 18 chr3 3708223 3708334 -214328824 + MER5A DNA MER1_type 55 175 -14 1266 122 0 5 chr3 3708334 3708522 -214328636 - AluSg/x SINE Alu -10 302 116 2330 84 0 7 chr3 3708890 3709186 -214327972 - AluSq SINE Alu -19 294 1 783 186 0 0 chr3 3709217 3709341 -214327817 + FLAM_A SINE Alu 1 124 -9 797 258 18 35 chr3 3709505 3709734 -214327424 - MIR SINE MIR -6 256 32 297 0 0 0 chr3 3709980 3710013 -214327145 + (TG)n Simple_repeat Simple_repeat 1 33 0 495 286 97 49 chr3 3710073 3710219 -214326939 - L1ME2 LINE L1 -233 5931 5793 2279 89 3 7 chr3 3710219 3710523 -214326635 + AluSx SINE Alu 2 304 -8 495 286 97 49 chr3 3710523 3711008 -214326150 - L1ME2 LINE L1 -371 5793 5270 228 306 38 12 chr3 3711111 3711271 -214325887 - L1ME2 LINE L1 -1005 5141 4978 2212 226 72 14 chr3 3711314 3711886 -214325272 + MER82 DNA MER2_type 1 605 -48 349 307 0 8 chr3 3711952 3712079 -214325079 + (TAA)n Simple_repeat Simple_repeat 3 128 0 942 281 88 38 chr3 3712863 3713460 -214323698 - L2 LINE L2 0 3313 2702 2057 184 17 121 chr3 3713849 3714390 -214322768 + L1PB4 LINE L1 4562 5003 -1143 1678 99 0 5 chr3 3714390 3714613 -214322545 + AluSg/x SINE Alu 71 292 -18 2057 184 17 121 chr3 3714613 3714831 -214322327 + L1PB4 LINE L1 5003 5242 -904 2199 128 8 23 chr3 3714931 3715220 -214321938 + L1PB4 LINE L1 5396 5679 -477 1610 211 0 3 chr3 3715220 3715519 -214321639 + AluJb SINE Alu 1 298 -14 2199 128 8 23 chr3 3715519 3715618 -214321540 + L1PB4 LINE L1 5679 5778 -378 363 23 0 0 chr3 3715620 3715664 -214321494 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 238 167 0 28 chr3 3715665 3715737 -214321421 + (TA)n Simple_repeat Simple_repeat 1 70 0 1899 156 34 6 chr3 3715748 3716106 -214321052 + L1PB4 LINE L1 5789 6156 0 2373 93 3 0 chr3 3716410 3716712 -214320446 - AluSq SINE Alu -8 305 3 1792 174 24 0 chr3 3716739 3717037 -214320121 + AluJo SINE Alu 3 307 -5 2508 56 3 0 chr3 3718211 3718517 -214318641 + AluY SINE Alu 1 307 -4 1449 97 4 18 chr3 3718517 3718744 -214318414 + MER4E LTR ERV1 516 739 -27 1148 224 28 6 chr3 3720163 3720453 -214316705 + MLT1A1 LTR MaLR 50 357 -8 266 322 148 0 chr3 3720472 3720587 -214316571 - MIR3 SINE MIR -31 177 46 698 230 94 88 chr3 3722933 3723051 -214314107 + MLT1D LTR MaLR 8 124 -343 697 58 58 19 chr3 3723051 3723155 -214314003 - L1PA10 LINE L1 -6 6162 6055 698 230 94 88 chr3 3723155 3723514 -214313644 + MLT1D LTR MaLR 124 467 0 1963 152 0 3 chr3 3723596 3723892 -214313266 - AluJb SINE Alu -17 295 1 193 293 106 49 chr3 3724691 3724814 -214312344 + L3b LINE CR1 1424 1553 -30 436 236 89 52 chr3 3725278 3725469 -214311689 + L2 LINE L2 3094 3291 -22 780 306 51 63 chr3 3727333 3727881 -214309277 - L2 LINE L2 -10 3303 2764 1669 97 9 0 chr3 3729471 3729687 -214307471 + AluSq SINE Alu 1 218 -95 2333 102 0 10 chr3 3730215 3730528 -214306630 - AluSg SINE Alu 0 310 1 443 280 26 53 chr3 3730741 3730930 -214306228 + MIR SINE MIR 29 212 -50 225 326 112 0 chr3 3731850 3731948 -214305210 - L2 LINE L2 -8 3264 3156 261 0 0 0 chr3 3732155 3732184 -214304974 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2695 112 2 10 chr3 3732958 3733376 -214303782 - L1PB1 LINE L1 -1 6150 5736 23 54 0 0 chr3 3734120 3734157 -214303001 + AT_rich Low_complexity Low_complexity 1 37 0 652 358 49 0 chr3 3734714 3734957 -214302201 + MIR SINE MIR 2 256 -6 457 332 150 31 chr3 3735203 3735622 -214301536 + L2 LINE L2 2845 3313 0 5594 91 63 13 chr3 3735706 3736467 -214300691 + L1PA13 LINE L1 4631 5353 -810 2352 81 0 13 chr3 3736467 3736774 -214300384 + AluY SINE Alu 1 303 -8 5594 91 63 13 chr3 3736774 3737497 -214299661 + L1PA13 LINE L1 5353 6158 -5 347 338 162 0 chr3 3737606 3737748 -214299410 + L2 LINE L2 3107 3271 -1 315 0 0 0 chr3 3738238 3738273 -214298885 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 325 0 0 chr3 3738341 3738418 -214298740 - MIR SINE MIR -102 160 84 2879 200 32 60 chr3 3739098 3739985 -214297173 + L1MB8 LINE L1 4726 5636 -542 237 77 26 0 chr3 3739985 3740024 -214297134 - Alu SINE Alu -7 301 262 2879 200 32 60 chr3 3740024 3740266 -214296892 + L1MB8 LINE L1 5636 5883 -295 2292 75 34 0 chr3 3740266 3740558 -214296600 + AluSq SINE Alu 1 302 -11 2879 200 32 60 chr3 3740558 3740891 -214296267 + L1MB8 LINE L1 5883 6178 0 1915 120 38 7 chr3 3740903 3741194 -214295964 + AluSx SINE Alu 1 300 -12 1052 226 73 20 chr3 3742758 3743145 -214294013 - MLT1C LTR MaLR -7 460 45 936 135 101 6 chr3 3743169 3743347 -214293811 - MLT1A1 LTR MaLR -1 364 170 370 305 76 8 chr3 3743592 3743723 -214293435 - MIR SINE MIR -115 147 8 281 259 0 0 chr3 3744666 3744720 -214292438 + MIR SINE MIR 206 259 -3 2091 107 45 0 chr3 3744795 3745084 -214292074 + AluSx SINE Alu 1 302 -10 488 297 78 21 chr3 3745092 3745284 -214291874 - MIR SINE MIR -28 234 32 2242 107 3 0 chr3 3745469 3745777 -214291381 - AluSx SINE Alu -3 309 1 1960 205 99 79 chr3 3746321 3747131 -214290027 - LTR1B LTR ERV1 0 826 1 1574 211 109 5 chr3 3747290 3747702 -214289456 + MLT2B1 LTR ERVL 1 455 -65 207 0 0 0 chr3 3747702 3747725 -214289433 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 0 0 0 chr3 3747732 3747757 -214289401 + (TG)n Simple_repeat Simple_repeat 2 26 0 412 271 60 36 chr3 3748041 3748207 -214288951 - MIR SINE MIR -73 189 20 438 284 30 0 chr3 3748353 3748487 -214288671 + MIR SINE MIR 53 190 -72 238 225 42 133 chr3 3749499 3749563 -214287595 + MIR3 SINE MIR 68 118 -90 1587 160 29 59 chr3 3749563 3749869 -214287289 - AluJo SINE Alu -9 303 7 238 225 42 133 chr3 3749869 3749924 -214287234 + MIR3 SINE MIR 118 176 -32 459 0 0 0 chr3 3750355 3750406 -214286752 + (CA)n Simple_repeat Simple_repeat 2 52 0 864 164 102 40 chr3 3750545 3750771 -214286387 + MER4B LTR ERV1 1 240 -370 2394 59 0 3 chr3 3751297 3751602 -214285556 + AluY SINE Alu 2 305 -6 2167 117 0 7 chr3 3751919 3752217 -214284941 - AluSx SINE Alu -16 296 1 2095 92 10 26 chr3 3752336 3752642 -214284516 - AluY SINE Alu -10 301 1 23 0 0 0 chr3 3752866 3752889 -214284269 + AT_rich Low_complexity Low_complexity 1 23 0 290 296 148 7 chr3 3753892 3754034 -214283124 + L2 LINE L2 2920 3081 -191 1813 169 10 3 chr3 3757466 3757762 -214279396 + AluJo SINE Alu 5 302 -10 276 77 0 0 chr3 3758348 3758387 -214278771 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr3 3758386 3758407 -214278751 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 319 196 165 62 chr3 3760221 3760318 -214276840 - MER5B DNA MER1_type -5 173 67 284 253 191 25 chr3 3760414 3760576 -214276582 + MIR SINE MIR 67 255 -7 1620 178 16 48 chr3 3760817 3761006 -214276152 - AluJo SINE Alu -8 304 126 2078 104 14 0 chr3 3761006 3761306 -214275852 + AluSx SINE Alu 1 304 0 1620 178 16 48 chr3 3761306 3761429 -214275729 - AluJo SINE Alu -186 126 1 2194 104 3 7 chr3 3761566 3761855 -214275303 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr3 3761869 3761890 -214275268 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 3762734 3762759 -214274399 + AT_rich Low_complexity Low_complexity 1 25 0 950 110 50 33 chr3 3763124 3763306 -214273852 - L1MA5 LINE L1 -8 6292 6108 2045 119 16 10 chr3 3763309 3763619 -214273539 - AluSx SINE Alu 0 312 1 197 301 12 60 chr3 3763648 3763731 -214273427 + MER5A DNA MER1_type 77 155 -34 576 228 168 0 chr3 3763800 3763949 -214273209 - MER5A DNA MER1_type -7 182 9 349 371 29 11 chr3 3765409 3765584 -214271574 - MIR3 SINE MIR -6 202 25 2261 121 16 0 chr3 3766539 3766845 -214270313 + AluSx SINE Alu 1 311 -1 356 258 139 40 chr3 3767134 3767285 -214269873 + MER21B LTR ERV1 98 263 -600 528 127 0 0 chr3 3767388 3767467 -214269691 - AluSg1 SINE Alu -230 79 1 2089 79 76 7 chr3 3767526 3767817 -214269341 - AluY SINE Alu 0 311 1 847 183 57 73 chr3 3769704 3769950 -214267208 + MER46C DNA MER2_type 80 321 -17 241 189 54 54 chr3 3769997 3770071 -214267087 - L2 LINE L2 -63 3250 3177 1410 162 62 16 chr3 3770094 3770402 -214266756 - L1MC2 LINE L1 -9 6335 6014 831 291 86 35 chr3 3770773 3771178 -214265980 + MLT1K LTR MaLR 162 587 -1 251 268 42 92 chr3 3771684 3771826 -214265332 - MER5A DNA MER1_type -28 161 27 1399 199 8 105 chr3 3773349 3773750 -214263408 + MLT1A1 LTR MaLR 3 364 -1 292 395 9 0 chr3 3773796 3773910 -214263248 - MIR SINE MIR -56 152 38 909 306 77 31 chr3 3774736 3774964 -214262194 - L2 LINE L2 -1 3312 3057 1932 147 58 6 chr3 3774964 3775310 -214261848 - MLT1A1 LTR MaLR -1 364 1 909 306 77 31 chr3 3775310 3775473 -214261685 - L2 LINE L2 -256 3057 2903 216 167 0 0 chr3 3775498 3775534 -214261624 + (CA)n Simple_repeat Simple_repeat 1 36 0 2267 117 3 0 chr3 3775828 3776136 -214261022 + AluSx SINE Alu 1 309 -3 580 246 175 6 chr3 3776167 3776338 -214260820 + MIR SINE MIR 37 236 -26 1101 82 0 0 chr3 3777376 3777511 -214259647 + AluSq/x SINE Alu 1 135 -177 2041 121 28 3 chr3 3777511 3777801 -214259357 + AluSx SINE Alu 1 297 -15 279 266 128 11 chr3 3777886 3777980 -214259178 - L2 LINE L2 0 3313 3209 3354 175 55 48 chr3 3778992 3779437 -214257721 + L1MB7 LINE L1 5208 5649 -535 2587 191 60 15 chr3 3779437 3779975 -214257183 - MER68 LTR ERV1 0 562 1 3354 175 55 48 chr3 3779975 3780447 -214256711 + L1MB7 LINE L1 5649 6130 -54 300 200 0 0 chr3 3780619 3780674 -214256484 + MLT1A1 LTR MaLR 311 365 0 249 320 0 0 chr3 3780674 3780752 -214256406 - MIR SINE MIR -39 223 146 1368 167 0 5 chr3 3780920 3781141 -214256017 + AluJo SINE Alu 86 305 -7 1195 253 50 19 chr3 3781171 3781534 -214255624 + MLT1A2 LTR MaLR 1 374 0 316 337 200 6 chr3 3781546 3781721 -214255437 - MIR SINE MIR -52 210 2 852 199 6 0 chr3 3782199 3782360 -214254798 + FRAM SINE Alu 1 162 -14 333 286 58 94 chr3 3782759 3782983 -214254175 + MIR SINE MIR 32 247 -15 468 317 77 18 chr3 3783076 3783297 -214253861 - MIR SINE MIR -3 259 26 1566 232 50 40 chr3 3783387 3783735 -214253423 + MER39 LTR ERV1 8 351 -356 3505 188 104 23 chr3 3783735 3784532 -214252626 - MER21B LTR ERV1 -1 862 1 1566 232 50 40 chr3 3784532 3784697 -214252461 + MER39 LTR ERV1 351 707 0 469 242 86 86 chr3 3785671 3785940 -214251218 + MER102b DNA MER1_type 70 338 -3 1919 138 47 0 chr3 3787170 3787468 -214249690 - AluSx SINE Alu 0 312 1 723 237 23 6 chr3 3787626 3787799 -214249359 + MER5B DNA MER1_type 1 176 -2 369 0 0 0 chr3 3788331 3788372 -214248786 + (TG)n Simple_repeat Simple_repeat 1 41 0 885 168 66 6 chr3 3789301 3789468 -214247690 + FRAM SINE Alu 1 176 0 1902 141 0 29 chr3 3789765 3790071 -214247087 - AluJb SINE Alu -4 308 12 201 74 0 0 chr3 3790102 3790129 -214247029 + (CA)n Simple_repeat Simple_repeat 2 28 0 543 276 167 10 chr3 3790135 3790327 -214246831 - MIR SINE MIR -21 241 20 492 111 70 0 chr3 3791039 3791300 -214245858 + (TA)n Simple_repeat Simple_repeat 1 279 0 516 102 51 21 chr3 3791319 3791556 -214245602 + (TA)n Simple_repeat Simple_repeat 1 244 0 314 292 22 0 chr3 3791556 3791645 -214245513 - L1MC4 LINE L1 -1339 6703 6613 284 165 11 0 chr3 3791647 3791738 -214245420 + (TA)n Simple_repeat Simple_repeat 1 92 0 657 116 35 0 chr3 3791752 3791925 -214245233 + (TA)n Simple_repeat Simple_repeat 2 180 0 307 203 72 0 chr3 3791931 3792000 -214245158 + L1MCa LINE L1 1992 2065 -4361 721 138 3 20 chr3 3792003 3792350 -214244808 + (TA)n Simple_repeat Simple_repeat 1 341 0 2112 81 0 7 chr3 3792395 3792668 -214244490 - AluY SINE Alu -12 299 29 189 196 0 0 chr3 3792728 3792774 -214244384 + (TA)n Simple_repeat Simple_repeat 2 47 0 378 192 70 6 chr3 3793098 3793186 -214243972 + MER5A DNA MER1_type 86 188 -1 2225 116 0 13 chr3 3793459 3793770 -214243388 - AluSx SINE Alu -5 307 1 570 234 22 7 chr3 3794618 3794755 -214242403 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3795838 3795907 -214241251 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3795908 3795989 -214241169 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3796069 3796133 -214241025 + MIR3 SINE MIR 98 161 -47 429 263 53 26 chr3 3797408 3797560 -214239598 + MIR3 SINE MIR 32 187 -21 2022 95 0 18 chr3 3798742 3799015 -214238143 - AluSq SINE Alu -15 298 31 1873 145 74 57 chr3 3799712 3800119 -214237039 + MLT2D LTR ERVL 1 414 0 373 331 24 24 chr3 3800200 3800369 -214236789 - MLT1K LTR MaLR -195 393 225 1278 194 20 103 chr3 3801105 3801503 -214235655 - MLT1A1 LTR MaLR 0 365 1 211 176 15 29 chr3 3801713 3801781 -214235377 + (CATA)n Simple_repeat Simple_repeat 3 69 0 451 331 43 27 chr3 3802294 3802551 -214234607 + L3 LINE CR1 1160 1420 -157 1739 157 52 0 chr3 3803029 3803320 -214233838 - AluSx SINE Alu 0 305 1 378 222 25 12 chr3 3803445 3803526 -214233632 - L2 LINE L2 -6 3307 3226 387 245 32 39 chr3 3804433 3804588 -214232570 + L1ME2 LINE L1 6001 6154 -10 24 53 0 0 chr3 3804834 3804872 -214232286 + AT_rich Low_complexity Low_complexity 1 38 0 1311 204 51 19 chr3 3806819 3807133 -214230025 - MER58B DNA MER1_type -14 327 4 337 279 140 7 chr3 3807286 3807422 -214229736 - MIR SINE MIR -105 157 4 308 286 75 106 chr3 3809829 3809990 -214227168 + MIR3 SINE MIR 46 201 -7 1483 182 78 7 chr3 3810135 3810404 -214226754 - AluJb SINE Alu -24 288 1 486 321 40 36 chr3 3810412 3810661 -214226497 - MER102a DNA MER1_type 0 330 81 281 360 18 0 chr3 3810750 3810864 -214226294 + L2 LINE L2 2201 2316 -998 195 69 0 0 chr3 3811110 3811139 -214226019 + (CA)n Simple_repeat Simple_repeat 2 30 0 475 146 171 8 chr3 3811139 3811262 -214225896 + L1MA9 LINE L1 6164 6306 -6 215 254 98 142 chr3 3811316 3811521 -214225637 + L3 LINE CR1 1178 1373 -204 206 181 0 56 chr3 3812070 3812142 -214225016 + A-rich Low_complexity Low_complexity 5 72 0 409 333 16 38 chr3 3813802 3813988 -214223170 - MER5A DNA MER1_type -6 183 2 198 118 0 0 chr3 3814169 3814203 -214222955 + (CAT)n Simple_repeat Simple_repeat 2 35 0 259 260 27 0 chr3 3814216 3814289 -214222869 - MIR SINE MIR -10 252 178 258 105 0 0 chr3 3814426 3814464 -214222694 + (TG)n Simple_repeat Simple_repeat 1 38 0 186 143 0 0 chr3 3816052 3816087 -214221071 + (TA)n Simple_repeat Simple_repeat 2 36 0 321 308 61 33 chr3 3816825 3817039 -214220119 - L1ME4a LINE L1 -3 6118 5899 404 313 162 14 chr3 3817049 3817400 -214219758 - L1ME4a LINE L1 -262 5859 5457 271 366 54 71 chr3 3817400 3817750 -214219408 + L2 LINE L2 2907 3250 -22 500 43 29 0 chr3 3820258 3820328 -214216830 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 271 145 0 65 chr3 3820390 3820452 -214216706 + Alu SINE Alu 241 298 -3 240 211 0 0 chr3 3820503 3820560 -214216598 + (TA)n Simple_repeat Simple_repeat 1 57 0 309 284 32 0 chr3 3820560 3820655 -214216503 - L1MC4 LINE L1 -1336 6706 6609 1957 146 0 13 chr3 3821260 3821561 -214215597 + AluSx SINE Alu 1 297 -15 277 114 0 0 chr3 3821721 3821765 -214215393 - U5 snRNA snRNA -72 44 1 428 306 121 29 chr3 3821782 3821988 -214215170 + MIR SINE MIR 26 250 -12 1045 280 100 32 chr3 3822114 3822585 -214214573 - L2 LINE L2 -7 3306 2804 619 193 29 0 chr3 3822666 3822806 -214214352 - L1 LINE L1 -938 5208 5065 * 1427 167 10 33 chr3 3822789 3822994 -214214164 + L1MA5 LINE L1 5895 6092 -208 2106 142 0 3 chr3 3822994 3823305 -214213853 - AluSx SINE Alu 0 312 3 1427 167 10 33 chr3 3823305 3823405 -214213753 + L1MA5 LINE L1 6092 6193 -107 7261 47 3 0 chr3 3823619 3824691 -214212467 + L1PA5 LINE L1 5079 6153 -1 1092 216 124 63 chr3 3826951 3827273 -214209885 - MLT1H LTR MaLR -4 545 179 2289 95 0 7 chr3 3827273 3827579 -214209579 + AluY SINE Alu 1 304 -7 1092 216 124 63 chr3 3827579 3827764 -214209394 - MLT1H LTR MaLR -370 179 7 216 372 74 8 chr3 3827865 3827986 -214209172 - MIR SINE MIR -113 149 21 202 281 167 21 chr3 3828160 3828256 -214208902 + L2 LINE L2 3121 3230 -42 23181 59 7 9 chr3 3828379 3831555 -214205603 + L1P LINE L1 14 3184 -2962 1792 171 26 61 chr3 3832080 3832536 -214204622 - L1MB8 LINE L1 -7 6171 5732 2161 128 0 28 chr3 3833138 3833459 -214203699 - AluSx SINE Alu 0 312 1 850 326 86 10 chr3 3833634 3834030 -214203128 + MLT1J1 LTR MaLR 8 433 -13 276 343 153 7 chr3 3834111 3834248 -214202910 + L2 LINE L2 3111 3267 -5 2331 92 13 0 chr3 3834436 3834739 -214202419 - AluSp SINE Alu -6 307 1 21 36 0 0 chr3 3834742 3834770 -214202388 + AT_rich Low_complexity Low_complexity 1 28 0 257 233 17 0 chr3 3835243 3835303 -214201855 + MIR SINE MIR 199 259 -3 292 308 17 50 chr3 3835331 3835451 -214201707 + MIR3 SINE MIR 78 193 -15 2189 114 13 3 chr3 3836782 3837089 -214200069 - AluSx SINE Alu -2 310 1 504 45 0 0 chr3 3837260 3837327 -214199831 + (TG)n Simple_repeat Simple_repeat 2 68 0 254 223 66 0 chr3 3837491 3837574 -214199584 + MIR SINE MIR 90 143 -65 300 291 6 91 chr3 3837742 3837850 -214199308 + MIR SINE MIR 78 169 -93 1820 138 71 15 chr3 3837850 3838175 -214198983 - MER61A LTR ERV1 0 343 1 300 291 6 91 chr3 3838175 3838231 -214198927 + MIR SINE MIR 169 228 -34 484 284 44 29 chr3 3839669 3839873 -214197285 - L2 LINE L2 0 3313 3107 257 310 118 48 chr3 3840165 3840394 -214196764 - L3 LINE CR1 -80 1497 1253 224 254 0 56 chr3 3842754 3842825 -214194333 + MIR SINE MIR 69 135 -127 802 241 21 70 chr3 3843133 3843461 -214193697 + MARNA DNA Mariner 155 466 -120 708 147 0 0 chr3 3844049 3844151 -214193007 - FRAM SINE Alu -30 146 45 2202 120 0 13 chr3 3844264 3844580 -214192578 + AluSx SINE Alu 1 312 0 828 129 0 23 chr3 3844580 3844703 -214192455 - FLAM_C SINE Alu -180 122 1 4472 144 33 9 chr3 3845346 3846157 -214191001 - Tigger1 DNA MER2_type -11 2407 1577 356 153 34 0 chr3 3846178 3846296 -214190862 + (TA)n Simple_repeat Simple_repeat 1 122 0 927 126 16 0 chr3 3846296 3846423 -214190735 - AluSq/x SINE Alu -181 131 3 9917 133 15 8 chr3 3846424 3847999 -214189159 - Tigger1 DNA MER2_type -829 1589 3 238 282 13 13 chr3 3848563 3848641 -214188517 - MIR SINE MIR -114 148 71 2211 92 3 0 chr3 3848852 3849157 -214188001 - AluSq SINE Alu 0 306 1 2061 191 26 0 chr3 3849264 3849642 -214187516 + MLT1B LTR MaLR 3 390 0 646 269 34 17 chr3 3849720 3849895 -214187263 - MIR SINE MIR -10 252 75 182 327 0 0 chr3 3850142 3850197 -214186961 - MIR SINE MIR -67 141 87 403 234 110 28 chr3 3852543 3852688 -214184470 + L2 LINE L2 3109 3265 -48 1779 151 7 0 chr3 3852783 3853086 -214184072 + AluSx SINE Alu 1 305 0 467 352 5 9 chr3 3853181 3853391 -214183767 - MIR SINE MIR -12 250 42 1967 177 69 14 chr3 3853777 3854278 -214182880 + MLT2A2 LTR ERVL 3 553 -1 198 143 0 0 chr3 3855595 3855630 -214181528 + (CA)n Simple_repeat Simple_repeat 1 35 0 1355 272 79 88 chr3 3856580 3857604 -214179554 - L2 LINE L2 0 3313 2289 183 327 192 24 chr3 3858138 3858346 -214178812 - MIR SINE MIR 0 262 20 193 235 136 25 chr3 3858853 3858934 -214178224 + MIR SINE MIR 20 109 -153 1852 167 0 19 chr3 3859015 3859360 -214177798 + AluJb SINE Alu 1 339 0 3473 93 12 14 chr3 3860057 3860552 -214176606 - LOR1a LTR ERV1 -3 494 1 2045 100 0 78 chr3 3861377 3861708 -214175450 - AluY SINE Alu -6 305 1 204 122 73 0 chr3 3863217 3863299 -214173859 + (TA)n Simple_repeat Simple_repeat 1 88 0 461 337 57 26 chr3 3863373 3863566 -214173592 + MIR SINE MIR 53 251 -11 204 125 0 0 chr3 3864138 3864170 -214172988 + (CATA)n Simple_repeat Simple_repeat 3 34 0 228 67 0 0 chr3 3864171 3864201 -214172957 + (TG)n Simple_repeat Simple_repeat 2 31 0 1517 175 7 78 chr3 3864202 3864510 -214172648 - AluJo SINE Alu -26 286 1 24 32 0 0 chr3 3864611 3864642 -214172516 + AT_rich Low_complexity Low_complexity 1 31 0 234 0 0 0 chr3 3865525 3865551 -214171607 + (CA)n Simple_repeat Simple_repeat 2 27 0 635 230 5 108 chr3 3865777 3865803 -214171355 - MER58A DNA MER1_type -2227 193 166 2013 124 0 14 chr3 3865803 3866094 -214171064 - AluSx SINE Alu -19 293 7 635 230 5 108 chr3 3866094 3866280 -214170878 - MER58A DNA MER1_type -2254 166 3 1317 199 11 14 chr3 3866854 3867130 -214170028 - MLT1B LTR MaLR 0 390 116 2588 53 0 0 chr3 3868460 3868762 -214168396 + AluY SINE Alu 1 302 -9 433 284 46 0 chr3 3869070 3869179 -214167979 - MER81 DNA DNA 0 114 1 2176 55 0 15 chr3 3869728 3870000 -214167158 - AluY SINE Alu 0 311 44 368 293 30 15 chr3 3870009 3870207 -214166951 + L1ME3A LINE L1 5086 5286 -860 439 283 118 55 chr3 3870224 3870801 -214166357 + L1ME3A LINE L1 5420 6032 -138 553 303 76 5 chr3 3871136 3871321 -214165837 - MIR SINE MIR -17 245 48 2057 133 3 7 chr3 3871322 3871630 -214165528 + AluSx SINE Alu 1 307 -5 857 247 174 12 chr3 3871989 3872333 -214164825 - Charlie4a DNA MER1_type -27 481 82 565 311 50 25 chr3 3873379 3873617 -214163541 + MIR SINE MIR 19 262 0 1378 118 86 14 chr3 3873683 3873903 -214163255 + AluSx SINE Alu 1 236 -76 2030 41 0 34 chr3 3874598 3874867 -214162291 - L1PA7 LINE L1 -1 6153 5894 366 373 20 15 chr3 3875103 3875304 -214161854 - MIR SINE MIR -10 252 51 1654 177 3 3 chr3 3875753 3876041 -214161117 - AluJo SINE Alu -24 288 1 284 309 56 32 chr3 3877061 3877187 -214159971 - L2 LINE L2 -18 3295 3167 561 244 60 50 chr3 3877559 3877760 -214159398 + MIR SINE MIR 2 204 -58 378 201 35 7 chr3 3877869 3878013 -214159145 + (CATATA)n Simple_repeat Simple_repeat 3 150 0 187 172 0 125 chr3 3878014 3878078 -214159080 - MIR SINE MIR -7 255 200 206 176 0 0 chr3 3878209 3878243 -214158915 + MIR SINE MIR 206 239 -23 2201 96 0 10 chr3 3878547 3878839 -214158319 + AluSc SINE Alu 10 298 -11 4623 106 10 0 chr3 3878840 3879569 -214157589 - L1P LINE L1 -743 5403 4690 4813 80 35 1 chr3 3879569 3880235 -214156923 + L1PA8A LINE L1 5444 6131 0 403 267 0 8 chr3 3880527 3880657 -214156501 + L1MB7 LINE L1 6043 6174 -5 1059 287 176 33 chr3 3881400 3882349 -214154809 + L2 LINE L2 2216 3309 -4 456 325 67 21 chr3 3882781 3883021 -214154137 + MLT1L LTR MaLR 20 270 -345 1821 147 7 7 chr3 3883805 3884111 -214153047 + MER47A DNA MER2_type 60 365 -1 297 0 0 0 chr3 3884119 3884152 -214153006 + (TG)n Simple_repeat Simple_repeat 2 34 0 288 137 0 0 chr3 3884918 3884969 -214152189 + (T)n Simple_repeat Simple_repeat 1 51 0 269 316 0 0 chr3 3885155 3885234 -214151924 + MIR SINE MIR 130 208 -54 21 0 0 0 chr3 3886067 3886088 -214151070 + AT_rich Low_complexity Low_complexity 1 21 0 245 266 117 0 chr3 3886194 3886288 -214150870 - L2 LINE L2 0 3272 3168 24 91 0 0 chr3 3886448 3886514 -214150644 + AT_rich Low_complexity Low_complexity 1 66 0 1412 210 24 48 chr3 3886766 3887138 -214150020 - MLT1A1 LTR MaLR -2 363 1 1480 122 0 65 chr3 3887490 3887737 -214149421 + AluSg SINE Alu 7 237 -73 984 182 0 17 chr3 3887780 3887956 -214149202 - FRAM SINE Alu -3 173 1 29 28 0 0 chr3 3888369 3888405 -214148753 + AT_rich Low_complexity Low_complexity 1 36 0 360 0 0 0 chr3 3888643 3888683 -214148475 + (TG)n Simple_repeat Simple_repeat 1 40 0 605 302 45 16 chr3 3888706 3889100 -214148058 - L1ME3A LINE L1 -218 5952 5542 365 329 150 28 chr3 3889712 3889787 -214147371 + L2 LINE L2 2618 2682 -631 1505 90 9 9 chr3 3889787 3889998 -214147160 - L1PA10 LINE L1 -4 6164 5954 365 329 150 28 chr3 3889998 3890550 -214146608 + L2 LINE L2 2682 3313 0 1335 231 65 39 chr3 3890582 3890998 -214146160 + L2 LINE L2 2481 2907 -407 1258 188 90 0 chr3 3891011 3891277 -214145881 + AluJo SINE Alu 1 290 -22 555 195 0 18 chr3 3891298 3891411 -214145747 + L1MB1 LINE L1 6035 6145 -44 860 202 0 0 chr3 3891457 3891630 -214145528 + L1MA10 LINE L1 6161 6333 -1 576 274 55 20 chr3 3891748 3891949 -214145209 + L2 LINE L2 3105 3312 -1 588 260 148 51 chr3 3892106 3892479 -214144679 + MLT1I LTR MaLR 1 409 0 7681 52 4 0 chr3 3893578 3894543 -214142615 - L1PA5 LINE L1 -1531 4615 3647 7159 45 5 1 chr3 3894543 3896081 -214141077 + L1PA5 LINE L1 4610 6146 -8 255 61 0 0 chr3 3896257 3896290 -214140868 + (A)n Simple_repeat Simple_repeat 1 33 0 508 311 13 0 chr3 3896913 3897064 -214140094 + MIR SINE MIR 10 162 -100 21 36 0 0 chr3 3897331 3897359 -214139799 + AT_rich Low_complexity Low_complexity 1 28 0 469 298 82 33 chr3 3899520 3899765 -214137393 + MIR SINE MIR 2 258 -4 333 295 65 29 chr3 3901108 3901247 -214135911 + L3 LINE CR1 936 1079 -498 195 114 0 0 chr3 3901493 3901528 -214135630 + (CA)n Simple_repeat Simple_repeat 2 36 0 2210 96 10 10 chr3 3901574 3901876 -214135282 + AluSx SINE Alu 1 302 -10 343 271 66 60 chr3 3902807 3902973 -214134185 + MIR SINE MIR 52 218 -44 2236 130 16 32 chr3 3903525 3903895 -214133263 - THE1B LTR MaLR 0 364 1 1675 181 3 13 chr3 3904112 3904427 -214132731 + AluJo SINE Alu 1 312 0 2868 6 0 0 chr3 3904629 3904940 -214132218 + AluYa5 SINE Alu 1 311 0 282 317 146 0 chr3 3905045 3905168 -214131990 - L2 LINE L2 0 3272 3132 411 236 71 7 chr3 3905276 3905416 -214131742 + L1MA10 LINE L1 6179 6327 -7 808 323 51 51 chr3 3905463 3905783 -214131375 - L2 LINE L2 -219 3053 2737 1958 111 0 0 chr3 3905783 3906045 -214131113 + AluSx SINE Alu 48 309 -3 808 323 51 51 chr3 3906045 3906219 -214130939 - L2 LINE L2 -535 2737 2564 1747 221 86 8 chr3 3906229 3906705 -214130453 + MLT1F1 LTR MaLR 1 513 -54 198 0 0 0 chr3 3907485 3907507 -214129651 + (T)n Simple_repeat Simple_repeat 1 22 0 686 251 63 58 chr3 3907536 3907628 -214129530 - MER113 DNA MER1_type? -1 520 430 2049 124 3 3 chr3 3907628 3907934 -214129224 + AluSg SINE Alu 1 306 0 686 251 63 58 chr3 3907934 3908187 -214128971 - MER113 DNA MER1_type? -91 430 172 25 31 0 0 chr3 3908208 3908240 -214128918 + AT_rich Low_complexity Low_complexity 1 32 0 257 333 24 0 chr3 3908327 3908411 -214128747 - MIR3 SINE MIR -54 154 69 2118 108 7 0 chr3 3909710 3909996 -214127162 + AluSq SINE Alu 9 296 -17 199 0 31 31 chr3 3910002 3910034 -214127124 + (CAA)n Simple_repeat Simple_repeat 2 33 0 235 279 64 79 chr3 3910135 3910275 -214126883 + MIR SINE MIR 82 219 -43 5758 36 1 0 chr3 3910442 3911132 -214126026 - L1PA4 LINE L1 -1 6154 5464 410 132 13 0 chr3 3911348 3911424 -214125734 + (CCTA)n Simple_repeat Simple_repeat 3 79 0 2187 123 23 0 chr3 3911568 3911870 -214125288 - AluSq SINE Alu -3 310 2 258 282 17 60 chr3 3912218 3912335 -214124823 - MIR SINE MIR -147 115 4 215 297 102 47 chr3 3912439 3912567 -214124591 + L2 LINE L2 3178 3312 -1 278 297 117 39 chr3 3912885 3913013 -214124145 + MIR3 SINE MIR 60 197 -11 219 281 211 47 chr3 3913866 3913994 -214123164 + MIR3 SINE MIR 10 158 -50 2569 167 21 4 chr3 3914125 3914604 -214122554 - L1MB7 LINE L1 -16 6168 5682 250 284 126 11 chr3 3914796 3914891 -214122267 + MIR SINE MIR 61 166 -96 688 255 34 0 chr3 3915108 3915257 -214121901 - MER5A DNA MER1_type -35 154 1 400 330 139 14 chr3 3915323 3915538 -214121620 + MIR SINE MIR 6 247 -15 237 65 0 0 chr3 3916228 3916259 -214120899 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 255 0 0 chr3 3916410 3916461 -214120697 + (CACCAT)n Simple_repeat Simple_repeat 1 51 0 431 320 92 44 chr3 3916614 3916864 -214120294 - MIR SINE MIR 0 262 1 344 341 103 0 chr3 3918698 3918824 -214118334 - MIR3 SINE MIR -5 203 65 275 258 11 21 chr3 3919067 3919160 -214117998 - LTR16C LTR ERVL -7 484 393 2172 138 0 0 chr3 3919445 3919749 -214117409 + AluSx SINE Alu 1 304 -8 980 293 19 74 chr3 3920002 3920158 -214117000 - L2 LINE L2 0 3313 3150 2314 86 0 43 chr3 3920158 3920483 -214116675 + AluY SINE Alu 1 311 0 980 293 19 74 chr3 3920483 3920756 -214116402 - L2 LINE L2 -163 3150 2908 1888 131 7 0 chr3 3920788 3921062 -214116096 - AluSx SINE Alu -36 276 1 695 204 5 5 chr3 3921079 3921270 -214115888 - L1MA4 LINE L1 -6 6294 6104 2208 118 3 6 chr3 3922044 3922358 -214114800 - AluSp SINE Alu 0 313 1 480 321 9 71 chr3 3923180 3923404 -214113754 + MIR SINE MIR 46 255 -7 363 295 27 9 chr3 3923488 3923600 -214113558 + L2 LINE L2 3159 3272 0 2202 123 7 0 chr3 3923877 3924187 -214112971 - AluSx SINE Alu 0 312 1 430 270 34 59 chr3 3925640 3925816 -214111342 - Charlie8 DNA MER1_type -2180 237 65 1992 143 0 10 chr3 3925816 3926116 -214111042 + AluJo SINE Alu 1 297 -15 430 270 34 59 chr3 3926116 3926143 -214111015 - Charlie8 DNA MER1_type -2352 65 39 239 347 51 10 chr3 3926276 3926374 -214110784 - L2 LINE L2 -27 3245 3144 266 333 13 0 chr3 3926540 3926615 -214110543 + MIR SINE MIR 36 111 -97 501 63 0 13 chr3 3926766 3926845 -214110313 - L1MA7 LINE L1 -2 6289 6212 207 0 0 0 chr3 3927952 3927975 -214109183 + (T)n Simple_repeat Simple_repeat 1 23 0 341 269 42 152 chr3 3928197 3928506 -214108652 - L2 LINE L2 -4 3268 2994 215 295 67 19 chr3 3928663 3928768 -214108390 + MIR SINE MIR 130 239 -23 2269 99 3 7 chr3 3928907 3929211 -214107947 + AluY SINE Alu 1 303 -8 255 337 99 35 chr3 3929439 3929611 -214107547 + MIR SINE MIR 2 184 -78 353 354 18 18 chr3 3929869 3930031 -214107127 - MIR SINE MIR -70 192 32 271 313 240 7 chr3 3931609 3931759 -214105399 + MIR3 SINE MIR 21 205 -3 233 57 0 0 chr3 3932153 3932188 -214104970 - HAL1 LINE L1 -174 2333 2299 409 304 88 0 chr3 3932334 3932515 -214104643 - HAL1 LINE L1 -393 2114 1918 181 350 100 0 chr3 3932809 3932929 -214104229 - MIR SINE MIR 0 262 131 241 274 11 32 chr3 3933021 3933116 -214104042 - L1MB8 LINE L1 -58 6120 6028 3708 143 22 14 chr3 3933117 3933265 -214103893 + L1PA16 LINE L1 5520 5665 -501 1799 181 0 13 chr3 3933265 3933579 -214103579 + AluJo SINE Alu 1 310 -2 3708 143 22 14 chr3 3933579 3934061 -214103097 + L1PA16 LINE L1 5665 6155 -11 359 299 55 0 chr3 3934308 3934435 -214102723 - MER117 DNA MER1_type -7 190 57 556 281 94 0 chr3 3934497 3934668 -214102490 + MIR SINE MIR 19 205 -57 260 159 87 58 chr3 3935480 3935549 -214101609 - L2 LINE L2 -66 3247 3177 329 275 181 29 chr3 3935595 3935766 -214101392 + MIR SINE MIR 17 213 -49 2031 164 0 6 chr3 3935851 3936162 -214100996 + AluJb SINE Alu 1 309 -3 336 239 110 28 chr3 3936315 3936424 -214100734 - L2 LINE L2 -3 3310 3193 353 293 64 0 chr3 3936719 3936859 -214100299 - MIR SINE MIR -14 248 100 1528 276 58 9 chr3 3937633 3938180 -214098978 + L1MC4a LINE L1 7233 7806 -2 2361 56 0 75 chr3 3938525 3938847 -214098311 - AluY SINE Alu -13 298 1 336 265 26 8 chr3 3939578 3939695 -214097463 + (TA)n Simple_repeat Simple_repeat 2 120 0 287 237 79 66 chr3 3941229 3941381 -214095777 + MER103 DNA DNA 1 154 -12 595 241 26 101 chr3 3941501 3941729 -214095429 + MER58A DNA MER1_type 11 221 -3 227 259 183 46 chr3 3943265 3943396 -214093762 - MIR3 SINE MIR -58 150 2 6329 50 0 2 chr3 3945181 3945999 -214091159 - L1PA7 LINE L1 -3 6151 5336 14672 95 3 22 chr3 3945999 3948331 -214088827 + L1PA7 LINE L1 3057 5343 -803 186 338 65 57 chr3 3948593 3948728 -214088430 + L2 LINE L2 2211 2351 -963 1803 165 3 7 chr3 3948728 3949062 -214088096 + AluSq SINE Alu 1 333 0 186 338 65 57 chr3 3949062 3949188 -214087970 + L2 LINE L2 2351 2475 -839 4938 115 40 24 chr3 3949619 3950443 -214086715 - L1PA15 LINE L1 0 6165 5329 2589 211 5 16 chr3 3950445 3951024 -214086134 + L1P LINE L1 2172 2744 -3402 471 320 53 44 chr3 3951426 3951651 -214085507 - MIR SINE MIR -23 239 13 333 116 20 3 chr3 3951713 3951963 -214085195 + AluJb SINE Alu 12 331 0 2406 46 0 0 chr3 3952932 3953267 -214083891 - AluY SINE Alu 0 336 2 989 153 6 12 chr3 3954040 3954232 -214082926 + AluSq SINE Alu 123 313 0 348 296 37 0 chr3 3954479 3954587 -214082571 - L2 LINE L2 -10 3303 3192 932 189 11 194 chr3 3954704 3955166 -214081992 + LTR24 LTR ERV1 188 467 0 504 286 17 28 chr3 3955252 3955430 -214081728 - L2 LINE L2 -5 3308 3133 1873 152 40 3 chr3 3955480 3955777 -214081381 + AluSx SINE Alu 1 308 -4 2240 214 6 4 chr3 3956902 3957445 -214079713 + L1P LINE L1 2908 3451 -2695 209 280 14 140 chr3 3957453 3957596 -214079562 + L2 LINE L2 3179 3303 -10 243 0 0 0 chr3 3961920 3961947 -214075211 + (CA)n Simple_repeat Simple_repeat 2 28 0 325 307 62 36 chr3 3962955 3963147 -214074011 + L1ME4a LINE L1 5702 5898 -223 1800 188 106 33 chr3 3963659 3964084 -214073074 - MLT1C LTR MaLR -8 459 4 225 244 0 0 chr3 3964231 3964276 -214072882 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 320 330 48 37 chr3 3964993 3965181 -214071977 - MIR SINE MIR -69 193 4 743 168 0 0 chr3 3965304 3965429 -214071729 + FLAM_C SINE Alu 12 136 -7 219 139 0 0 chr3 3967161 3967197 -214069961 + (CAG)n Simple_repeat Simple_repeat 3 38 0 208 401 8 8 chr3 3967533 3967558 -214069600 - MIR SINE MIR -16 192 168 6873 42 37 3 chr3 3967558 3968883 -214068275 + L1PA5 LINE L1 4786 6154 0 208 401 8 8 chr3 3968883 3969011 -214068147 - MIR SINE MIR -39 169 38 891 200 0 11 chr3 3969592 3969767 -214067391 + AluJb SINE Alu 131 303 -9 2300 96 0 3 chr3 3971409 3971710 -214065448 + AluSc SINE Alu 1 300 -9 273 57 0 0 chr3 3972207 3972242 -214064916 + (TCC)n Simple_repeat Simple_repeat 2 36 0 3582 163 16 5 chr3 3972526 3973196 -214063962 + L1MA5 LINE L1 5618 6295 -5 300 111 0 0 chr3 3974562 3974607 -214062551 + (CAG)n Simple_repeat Simple_repeat 3 47 0 183 404 57 7 chr3 3974942 3975083 -214062075 - MIR3 SINE MIR -16 192 45 2192 197 83 10 chr3 3977517 3978025 -214059133 + L1MB8 LINE L1 5619 6163 -15 364 280 40 0 chr3 3979247 3979347 -214057811 + MER5A DNA MER1_type 9 112 -77 378 0 0 0 chr3 3979825 3979867 -214057291 + (CA)n Simple_repeat Simple_repeat 1 42 0 260 287 13 102 chr3 3980996 3981153 -214056005 + L2 LINE L2 3171 3313 0 2092 141 3 3 chr3 3981443 3981756 -214055402 + AluSq SINE Alu 1 313 0 237 258 103 52 chr3 3982283 3982438 -214054720 + MER102b DNA MER1_type 164 326 -15 1564 250 101 2 chr3 3982778 3983206 -214053952 + MER34 LTR ERV1 26 495 -47 180 0 0 0 chr3 3983781 3983801 -214053357 + (CA)n Simple_repeat Simple_repeat 1 20 0 200 276 0 0 chr3 3985042 3985100 -214052058 + CT-rich Low_complexity Low_complexity 3 60 0 222 193 23 23 chr3 3986995 3987083 -214050075 + GA-rich Low_complexity Low_complexity 6 93 0 180 164 66 0 chr3 3987099 3987160 -214049998 + GA-rich Low_complexity Low_complexity 1 65 0 244 287 161 0 chr3 3987290 3987377 -214049781 - MIR3 SINE MIR -27 181 81 796 171 0 0 chr3 3987531 3987660 -214049498 - FLAM_A SINE Alu -4 129 1 229 315 22 11 chr3 3991282 3991374 -214045784 + MER102b DNA MER1_type 234 326 -15 311 254 35 122 chr3 3991555 3991752 -214045406 + MIR3 SINE MIR 16 195 -13 2164 94 0 63 chr3 3994252 3994583 -214042575 - AluSg SINE Alu 0 310 1 477 151 264 0 chr3 3994685 3994791 -214042367 + MER20 DNA MER1_type 62 195 -24 258 81 0 0 chr3 3995453 3995490 -214041668 - L2 LINE L2 -1 3312 3276 1034 245 112 99 chr3 3996628 3997476 -214039682 - L1MC4 LINE L1 -6 8036 7178 205 277 27 74 chr3 3998015 3998163 -214038995 + L2 LINE L2 2665 2805 -509 1023 211 79 4 chr3 3998358 3998586 -214038572 + MIR SINE MIR 17 261 -1 298 338 127 19 chr3 3998880 3999037 -214038121 + L2 LINE L2 3099 3272 0 338 303 46 28 chr3 3999196 3999305 -214037853 + MIR SINE MIR 37 147 -61 291 227 76 0 chr3 3999533 3999599 -214037559 + MER91C DNA MER1_type 35 105 -35 331 162 59 15 chr3 3999804 3999872 -214037286 + MLT1D LTR MaLR 7 77 -428 * 1800 153 0 15 chr3 3999871 4000224 -214036934 - Tigger4(Zombi) DNA MER2_type -4 2727 34 1651 206 72 60 chr3 4000236 4000669 -214036489 + MLT1D LTR MaLR 68 505 0 512 269 8 35 chr3 4001074 4001258 -214035900 + L1ME2 LINE L1 5984 6166 0 248 272 35 46 chr3 4001427 4001600 -214035558 + HAL1 LINE L1 1424 1594 -913 1330 268 26 17 chr3 4001931 4002465 -214034693 + L1MC/D LINE L1 4298 4836 -1310 598 182 16 107 chr3 4002489 4002676 -214034482 - L1MB7 LINE L1 -5 6179 6010 * 1071 194 60 39 chr3 4002670 4002928 -214034230 + L1MC/D LINE L1 4845 5111 -1035 2250 110 3 0 chr3 4002928 4003219 -214033939 + AluSx SINE Alu 1 292 -20 1071 194 60 39 chr3 4003219 4003243 -214033915 + L1MC/D LINE L1 5111 5133 -1013 1813 149 0 32 chr3 4003243 4003575 -214033583 + AluJb SINE Alu 9 312 0 748 203 7 0 chr3 4003592 4003735 -214033423 + L1MC/D LINE L1 5497 5640 -602 1449 206 127 2 chr3 4004847 4005232 -214031926 + MLT2B2 LTR ERVL 2 508 -7 2274 107 6 21 chr3 4006186 4006524 -214030634 - MER1B DNA MER1_type 0 337 5 4545 133 41 13 chr3 4007155 4007904 -214029254 + MER4D LTR ERV1 134 903 0 1045 261 48 85 chr3 4007928 4008411 -214028747 - MLT1J LTR MaLR -44 467 3 201 283 17 33 chr3 4009814 4009874 -214027284 - L2 LINE L2 -8 3264 3206 180 200 0 0 chr3 4012198 4012238 -214024920 + GA-rich Low_complexity Low_complexity 1 40 0 2414 143 44 1 chr3 4013270 4013783 -214023375 - MER6A DNA MER2_type 0 605 1 185 0 40 0 chr3 4014366 4014391 -214022767 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 6728 125 135 91 chr3 4015661 4017287 -214019871 - pTR5 LTR ERV1 -1 2437 741 5870 215 38 34 chr3 4017717 4018143 -214019015 - L1MC/D LINE L1 -743 5403 4980 2191 123 53 8 chr3 4018143 4018501 -214018657 - THE1C LTR MaLR -1 374 1 9919 121 43 5 chr3 4018501 4020022 -214017136 - THE1C-int LTR MaLR 0 1580 1 1884 128 68 44 chr3 4020022 4020388 -214016770 - THE1C LTR MaLR 0 375 1 5870 215 38 34 chr3 4020388 4020576 -214016582 - L1MC/D LINE L1 -1166 4980 4794 2200 113 0 10 chr3 4020576 4021019 -214016139 + AluSx SINE Alu 1 312 0 5870 215 38 34 chr3 4021019 4022229 -214014929 - L1MC/D LINE L1 -1352 4794 3659 28 48 0 0 chr3 4023072 4023114 -214014044 + AT_rich Low_complexity Low_complexity 1 42 0 3545 94 0 0 chr3 4023122 4023603 -214013555 + L1PA11 LINE L1 5694 6174 0 442 325 104 0 chr3 4024412 4024624 -214012534 + MIR SINE MIR 5 238 -24 24 32 0 0 chr3 4024637 4024668 -214012490 + AT_rich Low_complexity Low_complexity 1 31 0 634 266 108 9 chr3 4024893 4025115 -214012043 - L3 LINE CR1 -745 832 589 1272 236 59 13 chr3 4025191 4025564 -214011594 - L1MB7 LINE L1 -16 6168 5779 274 331 103 14 chr3 4025831 4025976 -214011182 - L3 LINE CR1 -1096 481 324 378 224 224 0 chr3 4026147 4026254 -214010904 + MIR SINE MIR 4 134 -128 285 296 28 28 chr3 4027013 4027155 -214010003 + L1ME LINE L1 5682 5823 -298 181 341 24 24 chr3 4027655 4027740 -214009418 - L2 LINE L2 0 3272 3188 2255 94 3 7 chr3 4027992 4028290 -214008868 - AluSp SINE Alu -16 297 1 791 229 0 61 chr3 4028368 4028582 -214008576 + MER3 DNA MER1_type 1 201 -8 187 329 25 0 chr3 4028686 4028765 -214008393 - L2 LINE L2 -644 2670 2590 2317 100 10 0 chr3 4028768 4029069 -214008089 - AluSq SINE Alu -9 304 1 1784 166 7 0 chr3 4029482 4029771 -214007387 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr3 4029781 4029801 -214007357 + (CAA)n Simple_repeat Simple_repeat 2 21 0 227 50 0 0 chr3 4029849 4029889 -214007269 - AluSg/x SINE Alu -2 301 262 733 74 11 0 chr3 4029889 4029984 -214007174 - AluSg/x SINE Alu -113 197 102 224 344 32 71 chr3 4031026 4031180 -214005978 + L2 LINE L2 3119 3266 -6 2035 114 3 36 chr3 4031646 4031954 -214005204 + AluY SINE Alu 1 298 -13 387 283 78 95 chr3 4032978 4033388 -214003770 + MLT1L LTR MaLR 120 522 -93 279 322 98 9 chr3 4033958 4034139 -214003019 + MIR3 SINE MIR 4 202 -60 374 311 123 34 chr3 4034335 4034570 -214002588 - MIR SINE MIR 0 262 7 303 93 0 0 chr3 4035035 4035078 -214002080 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2261 93 3 13 chr3 4036311 4036624 -214000534 - AluSx SINE Alu 0 312 3 766 138 86 0 chr3 4036884 4037036 -214000122 - L1MB4 LINE L1 -5 6175 6011 273 289 50 63 chr3 4037296 4037455 -213999703 + MER5A DNA MER1_type 30 186 -3 2189 112 7 0 chr3 4038239 4038543 -213998615 - AluSq SINE Alu -7 306 1 617 182 45 0 chr3 4039023 4039155 -213998003 + MER33 DNA MER1_type 56 193 -131 785 222 12 18 chr3 4039883 4040054 -213997104 - MER20 DNA MER1_type -19 200 31 610 253 118 27 chr3 4040095 4040316 -213996842 + MIR SINE MIR 22 262 0 234 298 64 11 chr3 4040339 4040433 -213996725 + MIR3 SINE MIR 63 161 -47 430 364 16 5 chr3 4040453 4040640 -213996518 + MIR SINE MIR 9 197 -65 204 24 48 48 chr3 4040652 4040694 -213996464 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 270 320 104 8 chr3 4041084 4041209 -213995949 + L2 LINE L2 3171 3307 -6 435 323 15 26 chr3 4041971 4042166 -213994992 + MER117 DNA MER1_type 5 197 0 614 274 38 28 chr3 4044156 4044368 -213992790 + L3 LINE CR1 709 922 -655 648 269 122 5 chr3 4044931 4045128 -213992030 + MIR SINE MIR 21 240 -22 2741 184 4 13 chr3 4045145 4045668 -213991490 + L1MB5 LINE L1 5649 6166 -8 184 217 0 43 chr3 4045779 4045825 -213991333 - L3 LINE CR1 -129 1448 1405 330 346 90 14 chr3 4045845 4046056 -213991102 + MIR SINE MIR 20 246 -16 375 330 82 16 chr3 4047307 4047489 -213989669 + MIR SINE MIR 23 216 -46 375 330 82 16 chr3 4047580 4047762 -213989396 + MIR SINE MIR 23 216 -46 375 330 82 16 chr3 4047853 4048035 -213989123 + MIR SINE MIR 23 216 -46 226 341 0 22 chr3 4048412 4048503 -213988655 + MIR SINE MIR 55 143 -119 373 347 64 6 chr3 4049716 4049889 -213987269 - MIR3 SINE MIR -11 197 15 27 29 0 0 chr3 4050414 4050448 -213986710 + AT_rich Low_complexity Low_complexity 1 34 0 1896 158 3 3 chr3 4051614 4051936 -213985222 - AluJb SINE Alu 0 312 1 2041 169 8 0 chr3 4051936 4052297 -213984861 - L1MB1 LINE L1 -53 6136 5773 856 138 0 103 chr3 4052299 4052386 -213984772 + L1M3 LINE L1 5607 5669 -665 2313 106 0 0 chr3 4052386 4052688 -213984470 - AluSx SINE Alu -10 302 1 856 138 0 103 chr3 4052688 4052774 -213984384 + L1M3 LINE L1 5669 5762 -572 592 349 4 24 chr3 4053993 4054245 -213982913 + MIR SINE MIR 3 249 -13 249 279 44 6 chr3 4054267 4054425 -213982733 + (TA)n Simple_repeat Simple_repeat 1 164 0 21 0 0 0 chr3 4054519 4054540 -213982618 + AT_rich Low_complexity Low_complexity 1 21 0 235 329 75 41 chr3 4055978 4056124 -213981034 - L2 LINE L2 -1 3271 3121 23 0 0 0 chr3 4056344 4056367 -213980791 + AT_rich Low_complexity Low_complexity 1 23 0 255 31 0 0 chr3 4056976 4057008 -213980150 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 279 0 0 0 chr3 4057258 4057289 -213979869 + (CAGC)n Simple_repeat Simple_repeat 4 34 0 800 311 108 28 chr3 4057372 4057910 -213979248 + L2 LINE L2 2734 3308 -5 1133 109 0 0 chr3 4058860 4059025 -213978133 - L1PA14 LINE L1 0 6161 5997 409 216 14 0 chr3 4061005 4061144 -213976014 + (TA)n Simple_repeat Simple_repeat 2 142 0 306 211 22 44 chr3 4061149 4061239 -213975919 + L1MC4 LINE L1 6616 6703 -1339 230 243 0 0 chr3 4061277 4061347 -213975811 - L1MC3 LINE L1 -1137 6648 6579 381 80 0 2 chr3 4061739 4061795 -213975363 - L1PA5 LINE L1 -255 5899 5851 544 13 0 64 chr3 4061796 4061874 -213975284 + L1PA3 LINE L1 6083 6155 0 198 171 0 0 chr3 4062350 4062391 -213974767 + (CA)n Simple_repeat Simple_repeat 2 42 0 851 203 45 17 chr3 4062646 4062823 -213974335 - MER5A DNA MER1_type 0 189 8 279 229 42 31 chr3 4062991 4063087 -213974071 - MER94 DNA DNA -1 133 37 189 171 0 0 chr3 4063428 4063463 -213973695 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1985 128 0 7 chr3 4063486 4063774 -213973384 - AluSx SINE Alu -26 286 1 305 176 28 28 chr3 4065135 4065243 -213971915 + (TA)n Simple_repeat Simple_repeat 2 109 0 275 204 46 102 chr3 4065749 4065857 -213971301 + L2 LINE L2 3210 3311 -2 246 105 0 0 chr3 4065932 4065970 -213971188 + (CAATT)n Simple_repeat Simple_repeat 1 38 0 180 154 26 26 chr3 4065971 4066010 -213971148 - L2 LINE L2 -5 3267 3229 507 231 13 45 chr3 4066297 4066453 -213970705 + MER105 DNA DNA 54 204 0 1812 152 27 3 chr3 4066506 4066802 -213970356 - MER2 DNA MER2_type -42 303 1 199 303 45 34 chr3 4067544 4067633 -213969525 + L2 LINE L2 2868 2957 -315 2509 152 24 15 chr3 4067711 4068171 -213968987 - L1MA7 LINE L1 0 6291 5828 2520 160 42 25 chr3 4068179 4068891 -213968267 + L1M2 LINE L1 4942 5663 -649 1367 184 79 11 chr3 4068891 4069009 -213968149 + AluJb SINE Alu 2 111 -201 246 32 0 0 chr3 4069009 4069040 -213968118 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1367 184 79 11 chr3 4069040 4069199 -213967959 + AluJb SINE Alu 111 298 -14 2520 160 42 25 chr3 4069199 4069333 -213967825 + L1M2 LINE L1 5663 5793 -519 413 187 0 11 chr3 4069334 4069425 -213967733 + (CA)n Simple_repeat Simple_repeat 2 91 0 244 175 0 53 chr3 4069425 4069482 -213967676 + L1M2 LINE L1 5783 5836 -455 364 284 220 15 chr3 4069484 4069752 -213967406 + L2 LINE L2 2991 3313 0 347 297 0 9 chr3 4070316 4070427 -213966731 + L2 LINE L2 3163 3272 0 318 327 39 20 chr3 4070697 4070961 -213966197 - L1MC4a LINE L1 -299 5822 5637 225 0 0 0 chr3 4071377 4071402 -213965756 + (T)n Simple_repeat Simple_repeat 1 25 0 40641 68 3 6 chr3 4071487 4071572 -213965586 + L1PA5 LINE L1 2 86 -6068 2451 62 3 3 chr3 4071572 4071877 -213965281 - AluY SINE Alu -6 305 1 40641 68 3 6 chr3 4071877 4077954 -213959204 + L1PA5 LINE L1 86 6152 -2 246 226 85 104 chr3 4078395 4078427 -213958731 - L2 LINE L2 0 3313 3282 1652 207 81 29 chr3 4078427 4078871 -213958287 + MLT1C LTR MaLR 1 467 0 246 226 85 104 chr3 4078871 4078944 -213958214 - L2 LINE L2 -31 3282 3210 203 79 0 79 chr3 4079045 4079083 -213958075 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 294 29 0 0 chr3 4079530 4079565 -213957593 + (CA)n Simple_repeat Simple_repeat 2 36 0 296 305 34 17 chr3 4080130 4080248 -213956910 - MIR SINE MIR -1 261 142 474 161 44 21 chr3 4080482 4080712 -213956446 + GA-rich Low_complexity Low_complexity 1 235 0 579 275 71 6 chr3 4080732 4080914 -213956244 + MIR SINE MIR 6 199 -63 213 205 0 0 chr3 4080953 4080992 -213956166 + (CAT)n Simple_repeat Simple_repeat 1 39 0 314 379 0 0 chr3 4080997 4081100 -213956058 + L3 LINE CR1 1435 1537 -40 2349 64 7 10 chr3 4081233 4081531 -213955627 - AluSq SINE Alu -16 297 1 221 269 216 15 chr3 4081687 4081821 -213955337 + MIR SINE MIR 74 234 -28 28 71 0 0 chr3 4081972 4082028 -213955130 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 4082145 4082167 -213954991 + AT_rich Low_complexity Low_complexity 1 22 0 2260 60 46 0 chr3 4082397 4082680 -213954478 - AluSg SINE Alu -14 296 1 315 170 0 0 chr3 4083462 4083515 -213953643 - L1PA5 LINE L1 -151 6003 5951 357 279 105 12 chr3 4085484 4085656 -213951502 + MIR SINE MIR 59 246 -16 2136 128 3 0 chr3 4085854 4086158 -213951000 + AluSx SINE Alu 1 305 -7 693 317 97 38 chr3 4086563 4086674 -213950484 - LTR16C LTR ERVL -20 471 368 1932 148 13 0 chr3 4086674 4086972 -213950186 + AluSx SINE Alu 1 302 -10 693 317 97 38 chr3 4086972 4087305 -213949853 - LTR16C LTR ERVL -123 368 1 191 383 66 48 chr3 4088152 4088379 -213948779 - L3 LINE CR1 -44 1533 1303 4477 123 13 20 chr3 4089079 4089824 -213947334 - L1MC1 LINE L1 0 6333 5594 2292 75 0 3 chr3 4090452 4090746 -213946412 + AluY SINE Alu 1 293 -18 186 318 45 0 chr3 4090890 4090956 -213946202 + MIR3 SINE MIR 89 157 -51 273 295 21 11 chr3 4091005 4091100 -213946058 - MIR SINE MIR -94 168 73 240 285 46 15 chr3 4092530 4092660 -213944498 - L1P LINE L1 -2409 3737 3604 24 32 0 0 chr3 4093530 4093561 -213943597 + AT_rich Low_complexity Low_complexity 1 31 0 2307 92 10 0 chr3 4093565 4093859 -213943299 + AluSx SINE Alu 1 297 -15 515 323 106 0 chr3 4094406 4094641 -213942517 - MIR SINE MIR 0 262 3 2246 94 0 3 chr3 4094853 4095151 -213942007 + AluSq SINE Alu 1 297 -16 1447 244 29 12 chr3 4095174 4095584 -213941574 + L1ME3 LINE L1 5745 6161 -1 205 51 51 0 chr3 4095739 4095778 -213941380 + (CAGG)n Simple_repeat Simple_repeat 4 44 0 1503 114 55 4 chr3 4096067 4096304 -213940854 - L1PA10 LINE L1 -6 6162 5914 244 226 32 11 chr3 4097535 4097628 -213939530 + (TA)n Simple_repeat Simple_repeat 2 96 0 2359 94 0 0 chr3 4097859 4098166 -213938992 + AluY SINE Alu 1 307 -4 317 298 44 9 chr3 4098502 4098616 -213938542 + MIR3 SINE MIR 81 198 -10 223 363 105 0 chr3 4100524 4100648 -213936510 - MIR SINE MIR -125 137 1 224 323 56 10 chr3 4100686 4100784 -213936374 - MIR SINE MIR -66 142 53 2974 218 189 21 chr3 4100785 4101344 -213935814 - L1MC4a LINE L1 -11 7797 7333 1735 190 0 28 chr3 4101344 4101665 -213935493 - AluJb SINE Alu 0 312 1 2974 218 189 21 chr3 4101665 4101767 -213935391 - L1MC4a LINE L1 -475 7333 7249 447 19 0 0 chr3 4101767 4101819 -213935339 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2974 218 189 21 chr3 4101819 4102173 -213934985 - L1MC4a LINE L1 -559 7249 6610 1818 220 44 80 chr3 4102624 4103276 -213933882 + MLT1E2 LTR MaLR 1 626 0 239 333 45 58 chr3 4103514 4103670 -213933488 + MIR3 SINE MIR 4 113 -95 2272 147 78 40 chr3 4104037 4104487 -213932671 + MLT1C LTR MaLR 1 467 0 1307 167 25 21 chr3 4104708 4104990 -213932168 + L1MA4 LINE L1 6009 6291 -9 294 305 169 0 chr3 4106074 4106192 -213930966 + MIR3 SINE MIR 32 169 -39 25 51 0 0 chr3 4106523 4106562 -213930596 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 4106701 4106723 -213930435 + AT_rich Low_complexity Low_complexity 1 22 0 393 22 0 0 chr3 4106955 4107001 -213930157 + (TA)n Simple_repeat Simple_repeat 2 47 0 266 209 0 77 chr3 4107022 4107113 -213930045 - L1MC4 LINE L1 -1347 6695 6612 554 280 52 28 chr3 4107729 4107940 -213929218 - MIR SINE MIR -13 249 34 206 108 54 0 chr3 4107977 4108014 -213929144 + A-rich Low_complexity Low_complexity 6 44 0 1413 203 53 4 chr3 4111081 4111362 -213925796 + AluJb SINE Alu 1 295 -17 1789 271 86 31 chr3 4111545 4111600 -213925558 - L1ME2 LINE L1 -9 6155 6104 2038 153 25 11 chr3 4111600 4111966 -213925192 + L1PA16 LINE L1 5792 6162 -4 1789 271 86 31 chr3 4111966 4112319 -213924839 - L1ME2 LINE L1 -60 6104 5772 2123 129 7 0 chr3 4112319 4112621 -213924537 + AluSx SINE Alu 1 304 -8 1789 271 86 31 chr3 4112621 4112954 -213924204 - L1ME2 LINE L1 -392 5772 5372 280 109 0 0 chr3 4113407 4113453 -213923705 - MADE1 DNA Mariner -34 46 1 1938 196 58 18 chr3 4114018 4114467 -213922691 + MLT1C LTR MaLR 1 467 0 258 136 0 0 chr3 4114500 4114544 -213922614 + L1MA6 LINE L1 6033 6076 -224 421 143 0 0 chr3 4114544 4114607 -213922551 + MLT1C LTR MaLR 403 465 -2 1236 159 68 0 chr3 4114643 4114894 -213922264 + L1MA6 LINE L1 6033 6300 0 2035 211 130 12 chr3 4117028 4117154 -213920004 - L1MC4 LINE L1 -6 8036 7926 324 0 0 0 chr3 4117154 4117190 -213919968 + (CA)n Simple_repeat Simple_repeat 2 37 0 2035 211 130 12 chr3 4117190 4117717 -213919441 - L1MC4 LINE L1 -116 7926 7306 260 351 0 0 chr3 4117717 4117794 -213919364 - L2 LINE L2 -57 3256 3180 206 300 135 38 chr3 4117837 4118074 -213919084 - L2 LINE L2 -121 3192 2933 2361 75 0 10 chr3 4118235 4118530 -213918628 - AluSx SINE Alu -20 292 1 1846 164 0 0 chr3 4118535 4118843 -213918315 - AluSx SINE Alu 0 308 1 236 293 38 57 chr3 4121482 4121514 -213915644 - L2 LINE L2 0 3272 3241 1652 207 81 29 chr3 4121514 4121958 -213915200 + MLT1C LTR MaLR 1 467 0 236 293 38 57 chr3 4121958 4122031 -213915127 - L2 LINE L2 -31 3241 3169 202 50 0 100 chr3 4122131 4122171 -213914987 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 294 29 0 0 chr3 4122616 4122651 -213914507 + (CA)n Simple_repeat Simple_repeat 2 36 0 296 305 34 17 chr3 4123216 4123334 -213913824 - MIR SINE MIR -1 261 142 259 192 58 0 chr3 4123459 4123511 -213913647 + Tigger5 DNA MER2_type 1 55 -2268 492 149 45 22 chr3 4123565 4123794 -213913364 + GA-rich Low_complexity Low_complexity 1 234 0 579 275 71 6 chr3 4123814 4123996 -213913162 + MIR SINE MIR 6 199 -63 213 205 0 0 chr3 4124035 4124074 -213913084 + (CAT)n Simple_repeat Simple_repeat 1 39 0 314 379 0 0 chr3 4124079 4124182 -213912976 + L3 LINE CR1 1435 1537 -40 2411 70 0 3 chr3 4124315 4124613 -213912545 - AluSq SINE Alu -16 297 1 2260 60 46 0 chr3 4124952 4125235 -213911923 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr3 4125465 4125489 -213911669 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr3 4125606 4125662 -213911496 + AT_rich Low_complexity Low_complexity 1 56 0 221 269 216 15 chr3 4125813 4125947 -213911211 - MIR SINE MIR -28 234 74 2437 74 0 3 chr3 4126103 4126413 -213910745 + AluY SINE Alu 1 309 -2 369 302 6 52 chr3 4127302 4127334 -213909824 - MIR SINE MIR -67 195 163 2303 96 0 7 chr3 4127334 4127637 -213909521 - AluSp SINE Alu -12 301 1 369 302 6 52 chr3 4127637 4127776 -213909382 - MIR SINE MIR -99 163 32 246 279 18 81 chr3 4127914 4128025 -213909133 - MIR SINE MIR -56 152 49 204 198 20 40 chr3 4128124 4128225 -213908933 + A-rich Low_complexity Low_complexity 2 100 0 183 250 89 0 chr3 4128811 4128867 -213908291 + L2 LINE L2 3248 3308 -5 393 323 31 26 chr3 4128883 4129078 -213908080 + MLT1J1 LTR MaLR 2 197 -249 1464 131 36 0 chr3 4129521 4129743 -213907415 + MER30 DNA MER1_type 1 230 0 2471 79 0 0 chr3 4130230 4130534 -213906624 - AluSc SINE Alu -5 304 1 206 349 0 64 chr3 4130899 4131008 -213906150 + L2 LINE L2 2998 3099 -173 1967 138 14 0 chr3 4134358 4134641 -213902517 - AluSx SINE Alu -25 287 1 466 303 141 29 chr3 4135805 4136082 -213901076 - L2 LINE L2 -3 3310 3003 2174 94 3 3 chr3 4138183 4138470 -213898688 + AluSg SINE Alu 1 287 -23 2543 46 3 3 chr3 4139074 4139378 -213897780 + AluY SINE Alu 1 304 -7 1350 149 164 11 chr3 4139621 4139883 -213897275 + AluSq SINE Alu 2 303 0 2418 75 0 0 chr3 4140641 4140959 -213896199 - AluY SINE Alu 0 318 1 24 0 0 0 chr3 4141663 4141687 -213895471 + AT_rich Low_complexity Low_complexity 1 24 0 244 325 0 24 chr3 4143614 4143697 -213893461 + L3b LINE CR1 1250 1330 -253 239 304 173 52 chr3 4143724 4143915 -213893243 + MIR SINE MIR 1 214 -48 204 318 85 64 chr3 4143927 4144147 -213893011 + MIR SINE MIR 17 256 -6 294 284 167 59 chr3 4145182 4145604 -213891554 + L2 LINE L2 2764 3220 -52 31 26 0 0 chr3 4145703 4145741 -213891417 + AT_rich Low_complexity Low_complexity 1 38 0 1075 200 23 5 chr3 4145898 4146113 -213891045 - MER20 DNA MER1_type 0 219 1 2369 116 11 21 chr3 4146520 4146899 -213890259 + THE1C LTR MaLR 1 375 0 2246 96 0 0 chr3 4147566 4147867 -213889291 + AluY SINE Alu 1 301 -10 432 264 97 7 chr3 4149012 4149167 -213887991 - MIR SINE MIR -10 252 84 278 320 47 16 chr3 4150026 4150154 -213887004 + MIR3 SINE MIR 37 168 -40 407 279 162 13 chr3 4150212 4150366 -213886792 + MER5A DNA MER1_type 13 189 0 4370 105 14 0 chr3 4150648 4151274 -213885884 + MER41B LTR ERV1 1 635 0 229 188 59 71 chr3 4151928 4152013 -213885145 + LTR67 LTR ERVL 459 542 -15 206 373 0 27 chr3 4152076 4152151 -213885007 + MIR SINE MIR 27 99 -109 2116 116 0 0 chr3 4152863 4153156 -213884002 - AluSq SINE Alu -20 293 1 352 309 73 57 chr3 4153183 4153429 -213883729 + MIR SINE MIR 2 251 -11 1543 62 0 19 chr3 4153479 4153690 -213883468 - AluY SINE Alu -3 308 102 1242 90 50 20 chr3 4153697 4153897 -213883261 - LTR12 LTR ERV1 -23 691 486 280 274 11 0 chr3 4153918 4154013 -213883145 - LTR30 LTR ERV1 -79 643 548 4175 168 105 54 chr3 4154016 4155185 -213881973 - pTR5 LTR ERV1 -411 2027 743 814 108 0 0 chr3 4155185 4155296 -213881862 - AluY SINE Alu -200 111 1 1540 137 92 30 chr3 4155316 4155651 -213881507 - L1MA7 LINE L1 -10 6281 5926 916 179 25 0 chr3 4155653 4155815 -213881343 + Tigger7 DNA MER2_type 1 166 -539 267 233 60 69 chr3 4156045 4156161 -213880997 + MIR3 SINE MIR 83 197 -11 187 269 115 0 chr3 4157076 4157154 -213880004 + L2 LINE L2 739 825 -2489 311 360 27 0 chr3 4158461 4158572 -213878586 - MIR3 SINE MIR -47 161 48 415 333 64 64 chr3 4158700 4159045 -213878113 + L1MEc LINE L1 4 348 -5771 309 307 12 37 chr3 4159254 4159417 -213877741 + L1MEc LINE L1 602 760 -5359 870 231 126 40 chr3 4159621 4159695 -213877463 + MLT1I LTR MaLR 5 71 -338 2266 104 7 0 chr3 4159695 4159994 -213877164 + AluSx SINE Alu 1 301 -11 870 231 126 40 chr3 4159994 4160292 -213876866 + MLT1I LTR MaLR 71 409 0 340 322 50 26 chr3 4160434 4160928 -213876230 + L1MEc LINE L1 1198 1652 -868 21 0 0 0 chr3 4161004 4161025 -213876133 + AT_rich Low_complexity Low_complexity 1 21 0 229 380 71 5 chr3 4161680 4161864 -213875294 + L2 LINE L2 3118 3313 0 2117 120 0 13 chr3 4162827 4163126 -213874032 + AluSg SINE Alu 1 295 -15 2114 183 47 10 chr3 4163226 4163631 -213873527 + MSTB LTR MaLR 1 420 -6 3618 124 60 28 chr3 4163650 4164264 -213872894 - MER51A LTR ERV1 0 634 1 1669 171 32 20 chr3 4164310 4164555 -213872603 - L1MB7 LINE L1 -15 6169 5917 2447 108 19 8 chr3 4164555 4164926 -213872232 - THE1C LTR MaLR 0 375 1 1669 171 32 20 chr3 4164926 4165024 -213872134 - L1MB7 LINE L1 -267 5917 5822 206 209 90 45 chr3 4165164 4165231 -213871927 - MIR SINE MIR -88 174 105 420 269 88 18 chr3 4165478 4165649 -213871509 - Charlie8 DNA MER1_type -2161 256 74 312 310 44 0 chr3 4165937 4166050 -213871108 - L2 LINE L2 -1 3271 3154 426 217 167 0 chr3 4166474 4166594 -213870564 + MLT1H LTR MaLR 405 544 -5 270 0 0 0 chr3 4166664 4166694 -213870464 + (TC)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr3 4166693 4166719 -213870439 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 1036 200 16 5 chr3 4166727 4166917 -213870241 - AluJb SINE Alu -32 280 89 1428 216 71 31 chr3 4167198 4167647 -213869511 + MLT1C LTR MaLR 1 467 0 388 354 32 6 chr3 4169745 4169903 -213867255 + MIR SINE MIR 15 176 -86 263 280 32 21 chr3 4171402 4171495 -213865663 + L2 LINE L2 3179 3272 0 296 283 107 6 chr3 4171932 4172091 -213865067 + MIR SINE MIR 87 261 -1 412 336 80 29 chr3 4172781 4172946 -213864212 + MIR SINE MIR 13 195 -67 2045 130 0 3 chr3 4172946 4173231 -213863927 + AluSx SINE Alu 1 284 -28 412 336 80 29 chr3 4173231 4173303 -213863855 + MIR SINE MIR 195 262 0 2092 36 0 33 chr3 4174514 4174788 -213862370 - L1PA3 LINE L1 -3 6152 5888 859 191 30 6 chr3 4175308 4175476 -213861682 - LTR32 LTR ERVL 0 471 300 2027 155 21 15 chr3 4175508 4175843 -213861315 - LTR32 LTR ERVL -120 351 15 497 218 1 48 chr3 4175881 4176012 -213861146 + MER20 DNA MER1_type 32 155 -64 409 269 119 15 chr3 4176677 4176811 -213860347 + MIR SINE MIR 1 148 -114 2378 211 78 47 chr3 4176828 4177548 -213859610 + MER21B LTR ERV1 1 833 -30 282 284 0 12 chr3 4177570 4177651 -213859507 + MIR SINE MIR 162 241 -21 226 274 0 32 chr3 4177695 4177757 -213859401 - MIR SINE MIR -63 145 86 299 279 137 0 chr3 4178330 4178513 -213858645 - MER113 DNA MER1_type? -308 213 6 1313 177 170 0 chr3 4178515 4178809 -213858349 + MER2 DNA MER2_type 1 344 0 1221 235 66 28 chr3 4178840 4178978 -213858180 - MER39 LTR ERV1 -32 675 544 2328 35 45 3 chr3 4178978 4179268 -213857890 - AluY SINE Alu -9 302 1 1221 235 66 28 chr3 4179268 4179491 -213857667 - MER39 LTR ERV1 -163 544 300 282 29 0 0 chr3 4180236 4180271 -213856887 + (CA)n Simple_repeat Simple_repeat 2 36 0 379 326 45 15 chr3 4180497 4180629 -213856529 + MIR SINE MIR 19 154 -108 1929 202 42 77 chr3 4180843 4180876 -213856282 - MLT2B1 LTR ERVL -9 511 478 387 0 0 0 chr3 4180876 4180919 -213856239 + (TG)n Simple_repeat Simple_repeat 2 44 0 1929 202 42 77 chr3 4180919 4181415 -213855743 - MLT2B1 LTR ERVL -42 478 1 314 213 63 39 chr3 4181502 4181629 -213855529 - Charlie7 DNA MER1_type -13 2599 2470 22 0 0 0 chr3 4181643 4181665 -213855493 + AT_rich Low_complexity Low_complexity 1 22 0 1951 188 54 15 chr3 4181935 4182398 -213854760 - Charlie1b DNA MER1_type -41 482 2 1042 211 5 5 chr3 4183248 4183438 -213853720 + MER20 DNA MER1_type 29 218 -1 2521 167 42 10 chr3 4184695 4185199 -213851959 - L1MB4 LINE L1 -2 6178 5659 492 312 75 17 chr3 4185989 4186162 -213850996 - MIR SINE MIR -74 188 6 2378 127 94 2 chr3 4187580 4187982 -213849176 - Tigger2 DNA MER2_type 0 2718 2280 221 363 65 0 chr3 4188133 4188257 -213848901 + MIR SINE MIR 131 262 0 239 262 0 0 chr3 4188421 4188463 -213848695 + AluJo SINE Alu 2 43 -257 1170 195 44 12 chr3 4188491 4188742 -213848416 + AluJo SINE Alu 28 286 -26 742 241 29 0 chr3 4189169 4189339 -213847819 - FAM SINE Alu 0 175 1 22 0 0 0 chr3 4192355 4192377 -213844781 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr3 4193020 4193065 -213844093 + AT_rich Low_complexity Low_complexity 1 45 0 311 301 55 55 chr3 4194124 4194522 -213842636 - L1M4 LINE L1 -2849 3297 2900 757 165 41 0 chr3 4195219 4195340 -213841818 - AluJo SINE Alu -153 159 34 250 240 0 0 chr3 4195408 4195458 -213841700 - L2 LINE L2 0 3313 3264 374 302 101 13 chr3 4197065 4197214 -213839944 - MIR3 SINE MIR -9 199 38 326 308 45 0 chr3 4197654 4197787 -213839371 + Charlie8 DNA MER1_type 61 199 -2218 6193 230 57 61 chr3 4197882 4199953 -213837205 + L1MB7 LINE L1 2310 4388 -1994 2476 57 0 0 chr3 4199953 4200251 -213836907 - AluY SINE Alu -13 298 1 6193 230 57 61 chr3 4200251 4200301 -213836857 + L1MB7 LINE L1 4388 4437 -1945 180 0 0 0 chr3 4200301 4200321 -213836837 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 6193 230 57 61 chr3 4200321 4200856 -213836302 + L1MB7 LINE L1 4437 4962 -1420 3954 187 30 23 chr3 4200866 4201768 -213835390 + L1MB7 LINE L1 5492 6399 -21 1497 189 107 42 chr3 4203801 4204203 -213832955 + L1MB8 LINE L1 5744 6171 -7 287 360 71 20 chr3 4204206 4204403 -213832755 + MIR SINE MIR 30 236 -26 206 254 55 0 chr3 4204517 4204572 -213832586 - L2 LINE L2 -4 3309 3252 2070 119 3 0 chr3 4204963 4205256 -213831902 - AluSg SINE Alu -16 294 1 183 184 0 0 chr3 4205379 4205417 -213831741 + (CA)n Simple_repeat Simple_repeat 2 39 0 2242 91 7 3 chr3 4206536 4206844 -213830314 + AluSc SINE Alu 1 309 0 22 0 0 0 chr3 4207834 4207856 -213829302 + AT_rich Low_complexity Low_complexity 1 22 0 1002 171 32 3 chr3 4207874 4208076 -213829082 + L1PB3 LINE L1 5940 6141 -10 271 309 0 0 chr3 4209288 4209372 -213827786 - L2 LINE L2 -5 3308 3225 1790 158 3 10 chr3 4209375 4209685 -213827473 + AluJb SINE Alu 3 310 -2 317 298 37 42 chr3 4209723 4209938 -213827220 - L2 LINE L2 -79 3234 3021 8112 39 0 2 chr3 4210963 4212729 -213824429 + L1PA4 LINE L1 4389 6154 -1 1671 163 13 3 chr3 4212750 4213051 -213824107 - AluJb SINE Alu -3 309 6 915 256 183 28 chr3 4213136 4213562 -213823596 + MLT1H LTR MaLR 58 549 0 886 197 121 10 chr3 4213763 4213961 -213823197 - MIR SINE MIR 0 262 43 459 239 103 19 chr3 4214031 4214186 -213822972 - MIR SINE MIR 0 262 95 2215 253 67 13 chr3 4214284 4214973 -213822185 + L1ME3 LINE L1 5429 6154 -8 198 317 35 103 chr3 4215013 4215158 -213822000 - L2 LINE L2 0 3313 3179 2053 117 0 7 chr3 4215370 4215660 -213821498 + AluSx SINE Alu 2 289 -23 225 0 0 0 chr3 4215666 4215691 -213821467 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 227 355 48 0 chr3 4216659 4216783 -213820375 + L2 LINE L2 2716 2845 -469 696 282 18 26 chr3 4217109 4217336 -213819822 - L1MEc LINE L1 -6117 279 55 529 276 17 17 chr3 4217881 4218055 -213819103 - MIR SINE MIR -1 261 88 25 51 0 0 chr3 4218205 4218244 -213818914 + AT_rich Low_complexity Low_complexity 1 39 0 2556 147 19 2 chr3 4218830 4219253 -213817905 + MSTB1 LTR MaLR 1 430 -2 186 209 0 0 chr3 4219575 4219618 -213817540 + CT-rich Low_complexity Low_complexity 1 43 0 1709 177 0 3 chr3 4219618 4220085 -213817073 - AluJo SINE Alu 0 466 1 481 343 122 34 chr3 4220229 4220696 -213816462 - L3 LINE CR1 -13 1564 1057 296 253 111 52 chr3 4221349 4221715 -213815443 + L1ME4a LINE L1 5536 6028 -93 2360 161 50 27 chr3 4224231 4224746 -213812412 - L1MB7 LINE L1 -3 6181 5655 274 282 182 9 chr3 4226041 4226151 -213811007 - MIR SINE MIR -26 236 108 292 271 25 76 chr3 4226827 4226945 -213810213 + MIR SINE MIR 12 123 -139 878 141 0 21 chr3 4227147 4227289 -213809869 + FLAM_C SINE Alu 3 141 -2 407 257 6 6 chr3 4227365 4227540 -213809618 + (TA)n Simple_repeat Simple_repeat 2 176 0 224 135 0 19 chr3 4227612 4227664 -213809494 + (TA)n Simple_repeat Simple_repeat 1 51 0 303 272 129 0 chr3 4227784 4227931 -213809227 - L1MC4 LINE L1 -372 7670 7505 538 287 148 26 chr3 4228536 4228766 -213808392 - MIR SINE MIR 0 262 5 1444 74 0 0 chr3 4230508 4230684 -213806474 - AluSg/x SINE Alu -49 263 88 2094 128 0 3 chr3 4230931 4231236 -213805922 + AluSx SINE Alu 1 304 -8 2299 107 0 0 chr3 4231457 4231765 -213805393 - AluSg SINE Alu -2 308 1 270 0 0 0 chr3 4232992 4233022 -213804136 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1971 132 0 0 chr3 4233024 4233304 -213803854 - AluSx SINE Alu -32 280 1 237 192 61 40 chr3 4235138 4235237 -213801921 + L1ME4a LINE L1 6021 6121 0 26 64 0 0 chr3 4235305 4235352 -213801806 + AT_rich Low_complexity Low_complexity 1 47 0 309 214 36 71 chr3 4235358 4235470 -213801688 - L1ME4a LINE L1 -198 5923 5816 532 311 12 6 chr3 4235857 4236021 -213801137 - MIR SINE MIR -68 194 30 859 130 7 0 chr3 4237012 4237150 -213800008 + L1PA15 LINE L1 6026 6164 -1 2625 7 0 0 chr3 4237156 4237506 -213799652 + AluYb8 SINE Alu 1 350 0 260 158 18 0 chr3 4238714 4238771 -213798387 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 200 287 230 0 chr3 4238864 4238951 -213798207 - L2 LINE L2 -19 3294 3188 185 306 54 54 chr3 4239214 4239325 -213797833 + MIR SINE MIR 145 255 -7 355 227 113 78 chr3 4239334 4239475 -213797683 + L2 LINE L2 2438 2583 -731 195 253 67 80 chr3 4239745 4239820 -213797338 + L3b LINE CR1 1510 1583 0 268 177 16 32 chr3 4240870 4240932 -213796226 - MARNA DNA Mariner -225 361 301 4901 181 32 16 chr3 4241108 4242126 -213795032 + L1MA4 LINE L1 3919 4953 -1193 3122 102 5 0 chr3 4242099 4242539 -213794619 + L1PB1 LINE L1 5709 6150 -1 * 5833 159 30 14 chr3 4242543 4243908 -213793250 + L1MA4 LINE L1 4903 6289 -11 184 359 123 0 chr3 4244077 4244183 -213792975 - L2 LINE L2 -3 3269 3151 858 281 123 28 chr3 4244274 4244673 -213792485 + MLT1J LTR MaLR 71 507 -4 2010 123 0 19 chr3 4246374 4246711 -213790447 + AluSx SINE Alu 1 331 0 781 196 78 44 chr3 4247011 4247215 -213789943 + MER20 DNA MER1_type 5 215 -4 2128 119 39 33 chr3 4247595 4247957 -213789201 + THE1B LTR MaLR 1 364 0 216 193 91 80 chr3 4247957 4248045 -213789113 + MIR SINE MIR 61 149 -113 351 274 156 30 chr3 4248329 4248464 -213788694 + MIR SINE MIR 70 221 -41 388 328 17 0 chr3 4248491 4248610 -213788548 - L2 LINE L2 -41 3272 3152 21 0 0 0 chr3 4248610 4248631 -213788527 + AT_rich Low_complexity Low_complexity 1 21 0 7054 86 11 6 chr3 4249037 4249319 -213787839 - L1P3 LINE L1 -388 5766 5487 189 0 0 0 chr3 4249319 4249340 -213787818 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1983 120 3 7 chr3 4249340 4249623 -213787535 - AluSg SINE Alu -28 282 1 7054 86 11 6 chr3 4249623 4250768 -213786390 - L1P3 LINE L1 -666 5488 4335 * 9525 99 1 4 chr3 4250753 4252131 -213785027 - L1P3 LINE L1 -2297 3849 2477 6986 55 6 1 chr3 4252131 4253514 -213783644 + L1PA7 LINE L1 4766 6153 -1 903 196 0 0 chr3 4253600 4253768 -213783390 + AluJb SINE Alu 138 305 -7 220 220 0 0 chr3 4255376 4255426 -213781732 + (TTAAA)n Simple_repeat Simple_repeat 5 54 0 930 97 148 0 chr3 4256775 4256930 -213780228 - L1MA5A LINE L1 -45 6252 6075 207 258 32 16 chr3 4256931 4256993 -213780165 - MIR SINE MIR -105 157 95 263 329 12 24 chr3 4257061 4257146 -213780012 + MIR SINE MIR 16 99 -109 499 154 11 0 chr3 4258264 4258355 -213778803 - L1MA5A LINE L1 -2 6295 6204 522 283 87 6 chr3 4259233 4259406 -213777752 - L2 LINE L2 -8 3305 3119 224 247 41 27 chr3 4259446 4259519 -213777639 - L2 LINE L2 -313 3000 2927 182 243 0 0 chr3 4262038 4262075 -213775083 + L2 LINE L2 3227 3263 -9 1219 200 69 7 chr3 4262718 4263023 -213774135 - MER33 DNA MER1_type 0 324 1 1707 139 49 69 chr3 4263037 4263383 -213773775 + MER44D DNA MER2_type 1 609 0 1200 87 174 0 chr3 4263784 4263980 -213773178 + MER30 DNA MER1_type 1 230 0 438 72 87 14 chr3 4264898 4264967 -213772191 + L1PA11 LINE L1 6097 6170 -4 24 0 0 0 chr3 4265162 4265186 -213771972 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 4266262 4266293 -213770865 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 4266616 4266638 -213770520 + AT_rich Low_complexity Low_complexity 1 22 0 274 260 26 0 chr3 4266765 4266842 -213770316 + MER116 DNA Mariner 2 80 0 219 360 61 26 chr3 4266855 4266969 -213770189 - L3 LINE CR1 -1 1576 1459 248 313 70 0 chr3 4267777 4267892 -213769266 - MIR3 SINE MIR -24 184 62 2360 31 7 0 chr3 4268380 4268669 -213768489 + AluY SINE Alu 1 291 -20 22 35 0 0 chr3 4269202 4269231 -213767927 + AT_rich Low_complexity Low_complexity 1 29 0 882 180 12 0 chr3 4269910 4270077 -213767081 - FRAM SINE Alu -8 168 1 497 354 0 18 chr3 4270279 4270508 -213766650 + L2 LINE L2 2733 2957 -357 252 293 96 3 chr3 4271017 4271172 -213765986 - MIR SINE MIR -18 190 21 25 0 0 0 chr3 4271967 4271992 -213765166 + AT_rich Low_complexity Low_complexity 1 25 0 1820 105 35 0 chr3 4273013 4273270 -213763888 - AluSq SINE Alu -9 304 39 241 301 143 23 chr3 4273576 4273709 -213763449 + MIR3 SINE MIR 58 206 -2 463 287 67 22 chr3 4274605 4274828 -213762330 + L1ME LINE L1 5383 5615 -506 243 240 60 40 chr3 4274871 4274971 -213762187 + MIR SINE MIR 154 255 -7 21 36 0 0 chr3 4275140 4275168 -213761990 + AT_rich Low_complexity Low_complexity 1 28 0 643 182 22 29 chr3 4276126 4276391 -213760767 + MER33 DNA MER1_type 5 344 -19 1906 153 0 10 chr3 4276391 4276698 -213760460 - AluJo SINE Alu -4 308 5 196 319 264 0 chr3 4276944 4277035 -213760123 + MIR SINE MIR 25 139 -69 256 178 93 124 chr3 4277593 4277722 -213759436 + MIR SINE MIR 133 257 -5 255 289 74 8 chr3 4278719 4278840 -213758318 + MIR SINE MIR 92 220 -42 1256 242 43 3 chr3 4278887 4279213 -213757945 - MER58B DNA MER1_type -1 340 2 721 286 35 17 chr3 4280333 4280564 -213756594 + MIR SINE MIR 2 236 -26 277 303 49 17 chr3 4281387 4281515 -213755643 - MIR SINE MIR -69 139 18 2006 109 0 7 chr3 4281852 4282171 -213754987 - AluSg1 SINE Alu 0 318 2 2196 59 3 40 chr3 4282232 4282536 -213754622 - AluY SINE Alu -18 293 1 296 265 36 0 chr3 4282681 4282764 -213754394 - MIR SINE MIR -10 252 167 782 227 41 118 chr3 4282769 4283134 -213754024 - MER68 LTR ERV1 0 562 226 957 182 91 0 chr3 4283135 4283322 -213753836 + MER34C LTR ERV1 1 204 -381 230 289 13 0 chr3 4283358 4283434 -213753724 + LTR48 LTR ERV1 379 455 -332 990 175 74 23 chr3 4283634 4283851 -213753307 - MER68 LTR ERV1 -334 228 1 287 253 67 13 chr3 4283852 4283927 -213753231 - MIR SINE MIR -97 165 87 379 292 84 78 chr3 4283951 4284273 -213752885 - LTR16C LTR ERVL 0 491 168 308 175 0 0 chr3 4284778 4284841 -213752317 - L1MB7 LINE L1 -10 6174 6112 3799 193 40 29 chr3 4284877 4286034 -213751124 - L1MB7 LINE L1 -57 6127 4959 474 272 72 31 chr3 4286630 4286825 -213750333 - MIR SINE MIR -1 261 59 21 0 0 0 chr3 4287746 4287767 -213749391 + AT_rich Low_complexity Low_complexity 1 21 0 189 292 0 21 chr3 4288186 4288234 -213748924 - MER5A DNA MER1_type -41 148 102 932 202 0 22 chr3 4288853 4289031 -213748127 - FAM SINE Alu -1 174 1 220 351 15 37 chr3 4289274 4289408 -213747750 + L2 LINE L2 2920 3050 -263 218 326 116 14 chr3 4289420 4289558 -213747600 + L2 LINE L2 3158 3309 -4 259 103 103 17 chr3 4289625 4289683 -213747475 + L1ME4a LINE L1 6041 6103 -18 4645 78 8 2 chr3 4290853 4291485 -213745673 - L1PA14 LINE L1 0 6161 5526 2190 108 0 7 chr3 4291497 4291804 -213745354 - AluY SINE Alu -6 305 1 666 275 94 17 chr3 4291808 4292095 -213745063 + L1ME3A LINE L1 5521 5829 -341 25 31 0 0 chr3 4292457 4292489 -213744669 + AT_rich Low_complexity Low_complexity 1 32 0 443 304 112 6 chr3 4294092 4294253 -213742905 + MIR3 SINE MIR 16 193 -15 426 342 51 6 chr3 4294526 4294684 -213742474 + MER5B DNA MER1_type 8 172 -6 1955 168 40 6 chr3 4294733 4295085 -213742073 + THE1B LTR MaLR 1 364 0 1837 176 7 10 chr3 4295130 4295436 -213741722 + AluJo SINE Alu 1 305 -7 22 0 0 0 chr3 4295720 4295742 -213741416 + AT_rich Low_complexity Low_complexity 1 22 0 2296 140 75 10 chr3 4296024 4296424 -213740734 + MSTA LTR MaLR 3 428 0 407 273 12 61 chr3 4296870 4297035 -213740123 - L2 LINE L2 -600 2714 2558 249 292 66 29 chr3 4297121 4297258 -213739900 - L1MC/D LINE L1 -1905 5903 5762 477 297 60 78 chr3 4297385 4297668 -213739490 - MLT1I LTR MaLR 0 409 132 193 213 85 0 chr3 4297949 4297996 -213739162 + MIR SINE MIR 111 161 -101 551 266 77 27 chr3 4298022 4298244 -213738914 + MLT1J2 LTR MaLR 59 291 -159 284 214 14 14 chr3 4298275 4298345 -213738813 + MLT1J2 LTR MaLR 376 445 -5 6327 150 17 18 chr3 4298345 4299464 -213737694 - Tigger1 DNA MER2_type 0 2418 1301 6451 135 54 14 chr3 4299466 4300580 -213736578 - Tigger1 DNA MER2_type -1260 1158 1 244 347 116 0 chr3 4301757 4301852 -213735306 - L2 LINE L2 -21 3251 3146 236 127 16 48 chr3 4302011 4302074 -213735084 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 32 67 0 0 chr3 4302129 4302189 -213734969 + AT_rich Low_complexity Low_complexity 1 60 0 23 54 0 0 chr3 4302420 4302457 -213734701 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 4304242 4304263 -213732895 + AT_rich Low_complexity Low_complexity 1 21 0 1910 127 7 39 chr3 4304271 4304579 -213732579 + AluSx SINE Alu 1 298 -14 310 389 0 16 chr3 4304653 4304779 -213732379 + MIR3 SINE MIR 34 157 -51 350 280 65 11 chr3 4304964 4305057 -213732101 - MIR SINE MIR -81 127 30 24 0 0 0 chr3 4305421 4305445 -213731713 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 4305634 4305659 -213731499 + AT_rich Low_complexity Low_complexity 1 25 0 290 244 47 71 chr3 4306745 4306801 -213730357 - MIR SINE MIR -54 208 152 865 191 30 78 chr3 4306801 4307031 -213730127 - MER20 DNA MER1_type 0 219 1 290 244 47 71 chr3 4307031 4307101 -213730057 - MIR SINE MIR -110 152 85 674 318 173 41 chr3 4307106 4307833 -213729325 + L2 LINE L2 2462 3308 -5 26 0 0 0 chr3 4307953 4307979 -213729179 + AT_rich Low_complexity Low_complexity 1 26 0 195 69 0 0 chr3 4308049 4308078 -213729080 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr3 4308751 4308773 -213728385 + AT_rich Low_complexity Low_complexity 1 22 0 1963 127 3 42 chr3 4309362 4309669 -213727489 - AluSx SINE Alu -15 297 3 351 318 59 42 chr3 4309746 4309985 -213727173 + MIR SINE MIR 7 249 -13 2294 96 3 10 chr3 4310328 4310642 -213726516 - AluSp SINE Alu -1 312 1 200 191 0 24 chr3 4310865 4310907 -213726251 + L2 LINE L2 3265 3305 -8 2814 167 6 28 chr3 4311888 4312427 -213724731 + L1MA7 LINE L1 5565 6091 -200 2126 202 49 14 chr3 4312442 4312888 -213724270 - MLT1C LTR MaLR -5 462 1 358 188 115 79 chr3 4312902 4312922 -213724236 - L1MC4 LINE L1 -92 7950 7932 1816 173 10 0 chr3 4312922 4313223 -213723935 - AluJb SINE Alu -8 304 1 358 188 115 79 chr3 4313223 4313367 -213723791 - L1MC4 LINE L1 -110 7932 7780 1860 156 23 7 chr3 4313385 4313692 -213723466 - MER7A DNA MER2_type -1 345 36 401 208 0 26 chr3 4313689 4313766 -213723392 - MER7A DNA MER2_type -272 76 2 * 456 285 37 49 chr3 4313766 4314012 -213723146 - L1MC4 LINE L1 -216 7779 7549 21 0 0 0 chr3 4314565 4314586 -213722572 + AT_rich Low_complexity Low_complexity 1 21 0 1876 34 0 0 chr3 4314739 4314972 -213722186 - L1P LINE L1 -776 5370 5138 5828 35 4 0 chr3 4314972 4315663 -213721495 + L1PA5 LINE L1 5436 6143 -11 207 235 0 0 chr3 4315663 4315714 -213721444 + (TA)n Simple_repeat Simple_repeat 2 52 0 787 121 0 57 chr3 4316172 4316313 -213720845 + FLAM_A SINE Alu 1 133 0 386 125 0 14 chr3 4316526 4316598 -213720560 + (TG)n Simple_repeat Simple_repeat 1 71 0 195 69 0 0 chr3 4317072 4317101 -213720057 + (CA)n Simple_repeat Simple_repeat 2 30 0 7448 36 5 0 chr3 4319982 4321470 -213715688 + L1PA5 LINE L1 4659 6150 -4 1087 237 71 40 chr3 4322506 4322860 -213714298 - MLT1A1 LTR MaLR 0 365 1 1745 158 3 52 chr3 4323123 4323433 -213713725 + AluJb SINE Alu 6 300 -12 448 169 48 32 chr3 4324151 4324275 -213712883 - LTR37A LTR ERV1 0 426 301 283 239 30 0 chr3 4324275 4324342 -213712816 - L2 LINE L2 -765 2549 2481 224 100 25 0 chr3 4325098 4325138 -213712020 + (TG)n Simple_repeat Simple_repeat 2 42 0 196 308 117 25 chr3 4325812 4325932 -213711226 + MIR3 SINE MIR 4 134 -74 286 269 157 60 chr3 4326947 4327163 -213709995 + MIR SINE MIR 20 256 -6 1043 219 88 3 chr3 4327333 4327630 -213709528 + MER33 DNA MER1_type 2 323 -1 204 294 109 22 chr3 4328666 4328758 -213708400 - MIR SINE MIR -78 130 31 1292 161 0 5 chr3 4329493 4329710 -213707448 + MLT2C2 LTR ERVL 1 216 -248 408 20 0 0 chr3 4329711 4329760 -213707398 + (CA)n Simple_repeat Simple_repeat 2 50 0 245 246 98 0 chr3 4330772 4330894 -213706264 + MER113 DNA MER1_type? 1 134 -387 332 299 28 28 chr3 4331226 4331370 -213705788 + L3 LINE CR1 1262 1405 -172 348 267 12 0 chr3 4332295 4332361 -213704797 + MLT1A1 LTR MaLR 3 69 -305 2042 169 91 0 chr3 4332361 4332734 -213704424 + MSTA LTR MaLR 1 407 -21 1660 189 7 3 chr3 4332787 4333089 -213704069 + MLT1A1 LTR MaLR 63 365 0 23 0 0 0 chr3 4333539 4333562 -213703596 + AT_rich Low_complexity Low_complexity 1 23 0 371 227 109 31 chr3 4333622 4333750 -213703408 - MIR SINE MIR -73 189 52 354 348 66 31 chr3 4334440 4334759 -213702399 + L2 LINE L2 2430 2759 -555 2884 88 2 0 chr3 4334846 4335242 -213701916 - L1PB2 LINE L1 -1 6150 5754 605 203 144 20 chr3 4335353 4335506 -213701652 - MER5A DNA MER1_type 0 189 18 249 248 50 40 chr3 4336182 4336283 -213700875 - L1M4 LINE L1 -408 5776 5675 857 327 107 52 chr3 4336806 4337058 -213700100 - L1M4 LINE L1 -1527 4619 4382 2492 55 0 0 chr3 4337058 4337366 -213699792 - AluY SINE Alu -3 308 1 857 327 107 52 chr3 4337366 4337707 -213699451 - L1M4 LINE L1 -1764 4382 4061 2272 39 32 0 chr3 4337707 4337990 -213699168 + AluY SINE Alu 1 292 -19 857 327 107 52 chr3 4337990 4339260 -213697898 - L1M4 LINE L1 -2085 4061 2652 1178 206 95 27 chr3 4339266 4339528 -213697630 - AluJo SINE Alu -30 282 3 28 0 0 0 chr3 4340318 4340346 -213696812 + AT_rich Low_complexity Low_complexity 1 28 0 385 178 100 0 chr3 4340350 4340440 -213696718 - L1MA9 LINE L1 -44 6268 6170 21 36 0 0 chr3 4340856 4340884 -213696274 + AT_rich Low_complexity Low_complexity 1 28 0 272 305 78 43 chr3 4340902 4341043 -213696115 + MER5B DNA MER1_type 5 150 -28 528 99 0 77 chr3 4341094 4341185 -213695973 - L1MA9 LINE L1 -837 5475 5392 3757 154 20 70 chr3 4341185 4342036 -213695122 + L1MA9 LINE L1 5492 6312 0 2309 107 0 0 chr3 4342054 4342363 -213694795 - AluSq SINE Alu -4 309 1 315 333 21 21 chr3 4342571 4342808 -213694350 - HAL1 LINE L1 -847 1660 1424 204 318 85 64 chr3 4343517 4343737 -213693421 - MIR SINE MIR -6 256 17 239 304 173 52 chr3 4343749 4343940 -213693218 - MIR SINE MIR -48 214 1 244 325 0 24 chr3 4343967 4344050 -213693108 - L3b LINE CR1 -253 1330 1250 24 0 0 0 chr3 4345976 4346000 -213691158 + AT_rich Low_complexity Low_complexity 1 24 0 2371 80 0 0 chr3 4346704 4347022 -213690136 + AluY SINE Alu 1 318 0 1678 103 157 4 chr3 4347780 4348042 -213689116 - AluSq SINE Alu 0 303 2 2535 52 3 3 chr3 4348285 4348591 -213688567 - AluY SINE Alu -5 306 1 2160 98 3 3 chr3 4349196 4349483 -213687675 - AluSg SINE Alu -23 287 1 466 303 141 29 chr3 4351584 4351861 -213685297 + L2 LINE L2 3003 3310 -3 1967 138 14 0 chr3 4353025 4353308 -213683850 + AluSx SINE Alu 1 287 -25 206 349 0 64 chr3 4356657 4356766 -213680392 - L2 LINE L2 -173 3099 2998 189 0 0 0 chr3 4356944 4356965 -213680193 + (A)n Simple_repeat Simple_repeat 1 21 0 2268 83 3 0 chr3 4357135 4357484 -213679674 + AluYb8 SINE Alu 1 350 0 884 213 0 24 chr3 4358831 4359000 -213678158 - FAM SINE Alu -10 165 1 499 275 76 28 chr3 4359269 4359480 -213677678 - MLT1J2 LTR MaLR -171 279 59 190 213 85 0 chr3 4359506 4359553 -213677605 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 4359834 4360117 -213677041 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 4360244 4360381 -213676777 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 4360467 4360632 -213676526 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 4361078 4361478 -213675680 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 4361760 4361782 -213675376 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 4362066 4362372 -213674786 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 4362417 4362769 -213674389 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 4362818 4362976 -213674182 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 4363249 4363410 -213673748 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 4365013 4365045 -213672113 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 4365407 4365694 -213671464 - L1ME3A LINE L1 -341 5829 5521 2168 112 0 7 chr3 4365698 4366002 -213671156 + AluY SINE Alu 1 302 -9 4676 76 8 2 chr3 4366014 4366646 -213670512 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 4367818 4367876 -213669282 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 4367943 4368081 -213669077 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 4368093 4368227 -213668931 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 4368470 4368648 -213668510 + FAM SINE Alu 1 174 -1 21 0 0 0 chr3 4369734 4369755 -213667403 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 4370676 4370871 -213666287 + MIR SINE MIR 59 261 -1 3676 197 37 26 chr3 4371467 4372622 -213664536 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 4372658 4372721 -213664437 + L1MB7 LINE L1 6112 6174 -10 292 231 107 39 chr3 4373638 4373894 -213663264 - L1ME4a LINE L1 -220 5901 5536 457 343 122 34 chr3 4374549 4375016 -213662142 + L3 LINE CR1 1057 1564 -13 2292 95 10 3 chr3 4375161 4375465 -213661693 + AluSq SINE Alu 1 306 -7 814 231 177 3 chr3 4375465 4375759 -213661399 + MLT1I LTR MaLR 65 409 0 306 323 60 26 chr3 4375905 4376403 -213660755 + L1MDa LINE L1 1400 1875 -868 21 0 0 0 chr3 4376476 4376497 -213660661 + AT_rich Low_complexity Low_complexity 1 21 0 229 380 71 5 chr3 4377152 4377336 -213659822 + L2 LINE L2 3118 3313 0 2121 123 0 13 chr3 4378299 4378600 -213658558 + AluSg SINE Alu 1 297 -13 2114 183 47 10 chr3 4378700 4379105 -213658053 + MSTB LTR MaLR 1 420 -6 3666 119 60 28 chr3 4379124 4379738 -213657420 - MER51A LTR ERV1 0 634 1 1665 171 32 20 chr3 4379784 4380029 -213657129 - L1MB7 LINE L1 -15 6169 5917 2471 105 19 8 chr3 4380029 4380400 -213656758 - THE1C LTR MaLR 0 375 1 1665 171 32 20 chr3 4380400 4380498 -213656660 - L1MB7 LINE L1 -267 5917 5822 206 209 90 45 chr3 4380638 4380705 -213656453 - MIR SINE MIR -88 174 105 420 269 88 18 chr3 4380952 4381123 -213656035 - Charlie8 DNA MER1_type -2161 256 74 312 310 44 0 chr3 4381411 4381524 -213655634 - L2 LINE L2 -1 3271 3154 419 242 167 0 chr3 4381948 4382068 -213655090 + MLT1H LTR MaLR 405 544 -5 342 0 0 0 chr3 4382138 4382176 -213654982 + (TC)n Simple_repeat Simple_repeat 2 39 0 270 0 0 0 chr3 4382175 4382205 -213654953 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1036 200 16 5 chr3 4382213 4382403 -213654755 - AluJb SINE Alu -32 280 89 1428 216 71 31 chr3 4382685 4383134 -213654024 + MLT1C LTR MaLR 1 467 0 2084 142 3 0 chr3 4485637 4485948 -213551210 + AluSx SINE Alu 1 312 0 200 262 98 0 chr3 4486777 4486838 -213550320 + MIR SINE MIR 80 146 -116 8443 125 6 17 chr3 4487579 4488961 -213548197 - L1P LINE L1 -795 5351 3985 180 111 0 0 chr3 4490467 4490494 -213546664 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 243 377 57 0 chr3 4490687 4490809 -213546349 + MIR SINE MIR 39 167 -95 277 333 44 9 chr3 4490935 4491049 -213546109 - MIR3 SINE MIR -24 184 67 1136 242 79 0 chr3 4491084 4491427 -213545731 + L1MD3 LINE L1 3586 3955 -2191 646 193 28 7 chr3 4491456 4491601 -213545557 + MLT2D LTR ERVL 71 218 -196 1404 252 97 11 chr3 4491604 4492143 -213545015 + L1MD3 LINE L1 4776 5360 -786 1495 198 104 18 chr3 4492146 4493203 -213543955 + L1MD3 LINE L1 5464 6428 -1567 321 26 0 0 chr3 4493203 4493241 -213543917 + (CA)n Simple_repeat Simple_repeat 2 39 0 1495 198 104 18 chr3 4493241 4494243 -213542915 + L1MD3 LINE L1 6428 7995 0 336 247 216 6 chr3 4494256 4494418 -213542740 + MIR SINE MIR 67 262 0 291 350 8 8 chr3 4495372 4495489 -213541669 - L2 LINE L2 -6 3266 3150 15404 48 7 2 chr3 4496218 4498931 -213538227 - L1PA5 LINE L1 0 6154 3431 306 125 21 0 chr3 4498981 4499029 -213538129 - MADE1 DNA Mariner 0 80 32 215 318 20 80 chr3 4499977 4500128 -213537030 + MIR SINE MIR 10 151 -111 765 222 13 0 chr3 4500170 4500323 -213536835 + MER63A DNA MER1_type 50 204 -6 202 212 23 23 chr3 4502941 4502989 -213534169 - MIR SINE MIR -106 102 54 471 226 144 5 chr3 4504083 4504278 -213532880 - L1M4 LINE L1 -846 5300 5079 688 182 25 19 chr3 4504303 4504462 -213532696 + MER33 DNA MER1_type 15 174 -150 256 238 48 0 chr3 4504468 4504573 -213532585 - L1MCc LINE L1 -4910 652 543 2259 112 3 0 chr3 4504604 4504916 -213532242 - AluSq SINE Alu 0 313 1 1253 281 89 53 chr3 4505615 4505725 -213531433 + MLT1E3 LTR MaLR 1 106 -518 1442 169 93 37 chr3 4505725 4506080 -213531078 + THE1C LTR MaLR 1 375 0 1253 281 89 53 chr3 4506080 4506567 -213530591 + MLT1E3 LTR MaLR 106 619 -5 32 26 0 0 chr3 4506635 4506674 -213530484 + AT_rich Low_complexity Low_complexity 1 39 0 351 372 51 60 chr3 4507597 4508011 -213529147 - L2 LINE L2 -6 3266 2857 604 236 106 25 chr3 4508068 4508305 -213528853 + MER5C DNA MER1_type 1 256 -68 293 288 254 0 chr3 4509416 4509558 -213527600 + MIR SINE MIR 37 213 -49 320 254 56 16 chr3 4509650 4509776 -213527382 + MER104 DNA Tc2 26 156 -24 2290 113 0 3 chr3 4509952 4510261 -213526897 - AluSg SINE Alu -2 308 1 444 125 48 19 chr3 4510263 4510367 -213526791 - L1PA8 LINE L1 0 6172 6066 246 32 0 0 chr3 4510812 4510843 -213526315 + (CA)n Simple_repeat Simple_repeat 1 31 0 2120 113 0 26 chr3 4511648 4511957 -213525201 - AluSx SINE Alu -11 301 1 2360 71 3 0 chr3 4512396 4512704 -213524454 + AluY SINE Alu 1 309 -2 727 131 37 0 chr3 4513351 4513458 -213523700 - MER4B LTR ERV1 0 610 500 21 36 0 0 chr3 4513681 4513709 -213523449 + AT_rich Low_complexity Low_complexity 1 28 0 2854 204 60 48 chr3 4513793 4514675 -213522483 - L1MC4 LINE L1 -214 7828 6936 1792 241 97 11 chr3 4514740 4515378 -213521780 - L1M4 LINE L1 -979 5167 4475 1253 295 45 14 chr3 4515443 4515884 -213521274 - L1MCc LINE L1 -5589 481 27 441 229 10 0 chr3 4516206 4516302 -213520856 + MER5A DNA MER1_type 10 106 -83 1669 138 160 9 chr3 4517873 4518191 -213518967 - MSTA LTR MaLR 0 428 63 210 306 178 22 chr3 4518231 4518411 -213518747 + L2 LINE L2 2889 3096 -217 974 241 106 20 chr3 4518441 4518744 -213518414 - MLT2D LTR ERVL -8 406 78 317 309 0 73 chr3 4518854 4518990 -213518168 + L2 LINE L2 3167 3292 -21 2101 122 0 4 chr3 4519019 4519298 -213517860 - AluSx SINE Alu -30 282 5 379 110 132 55 chr3 4519482 4519573 -213517585 + MER4A LTR ERV1 1 98 -566 1197 147 96 97 chr3 4519573 4519931 -213517227 + MER4A LTR ERV1 261 664 0 1973 158 24 3 chr3 4520198 4520704 -213516454 + L1M1 LINE L1 5072 5585 -720 1753 168 14 0 chr3 4520779 4521065 -213516093 + LTR10B LTR ERV1 258 547 0 1049 249 89 4 chr3 4521065 4521334 -213515824 + LTR10B-int LTR ERV1 5 296 -6353 * 10369 244 19 32 chr3 4521330 4524572 -213512586 + BaEV-int LTR ERV1 4185 6649 0 1608 205 14 7 chr3 4524647 4524935 -213512223 + LTR10B LTR ERV1 258 547 0 4163 114 35 31 chr3 4524935 4525332 -213511826 + L1MA2 LINE L1 5582 5985 -319 2090 125 26 0 chr3 4525332 4525636 -213511522 + AluSp SINE Alu 1 312 -1 4163 114 35 31 chr3 4525636 4525958 -213511200 + L1MA2 LINE L1 5985 6304 0 311 304 61 9 chr3 4526250 4526365 -213510793 - MIR3 SINE MIR -54 154 34 316 257 81 0 chr3 4526427 4526501 -213510657 - L2 LINE L2 -1 3312 3233 1995 154 3 0 chr3 4527689 4528000 -213509158 + AluSx SINE Alu 1 312 0 364 235 163 60 chr3 4528270 4528436 -213508722 - MER20 DNA MER1_type -27 192 10 498 114 0 0 chr3 4528870 4528940 -213508218 - AluJ/FRAM SINE Alu -17 295 226 316 288 62 0 chr3 4529733 4529893 -213507265 + L1MC4a LINE L1 4890 5059 -1087 425 355 84 12 chr3 4530073 4530561 -213506597 + L1MC4a LINE L1 5308 5830 -1978 267 167 139 0 chr3 4530962 4531034 -213506124 - MIR SINE MIR -3 259 178 270 306 41 10 chr3 4532846 4532944 -213504214 + MLT1L LTR MaLR 165 265 -350 220 304 43 0 chr3 4534164 4534233 -213502925 - L2 LINE L2 0 3272 3201 564 56 0 0 chr3 4534457 4534529 -213502629 + (GGAA)n Simple_repeat Simple_repeat 4 75 0 26 0 0 0 chr3 4535833 4535859 -213501299 + AT_rich Low_complexity Low_complexity 1 26 0 497 292 49 15 chr3 4535863 4536130 -213501028 - L1MC5 LINE L1 -212 7749 7474 228 226 19 0 chr3 4536167 4536220 -213500938 + L2 LINE L2 3217 3270 -2 206 291 0 0 chr3 4536531 4536586 -213500572 + L2 LINE L2 3244 3298 -15 776 329 80 6 chr3 4538606 4538968 -213498190 + LTR16C LTR ERVL 96 484 -7 357 233 0 29 chr3 4540920 4541023 -213496135 - LTR67 LTR ERVL -6 551 452 322 286 32 84 chr3 4543014 4543168 -213493990 + MIR3 SINE MIR 36 181 -27 382 305 241 12 chr3 4544310 4544559 -213492599 + L2 LINE L2 3006 3311 -2 228 67 0 0 chr3 4544559 4544589 -213492569 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 225 296 21 63 chr3 4544828 4544970 -213492188 - L3b LINE CR1 -131 1452 1317 21 0 0 0 chr3 4545293 4545314 -213491844 + AT_rich Low_complexity Low_complexity 1 21 0 237 139 0 0 chr3 4545567 4545610 -213491548 + (CA)n Simple_repeat Simple_repeat 2 44 0 6991 51 38 0 chr3 4545733 4546693 -213490465 - L1PA6 LINE L1 -7 6147 5184 896 230 5 5 chr3 4546741 4546928 -213490230 + MER58A DNA MER1_type 34 220 -4 8009 13 0 0 chr3 4547241 4548843 -213488315 - L1HS LINE L1 0 6155 4554 453 330 76 21 chr3 4548911 4549202 -213487956 + L2 LINE L2 2159 2465 -849 618 291 180 26 chr3 4549202 4549634 -213487524 - L1MEd LINE L1 -4908 1211 838 1582 110 12 31 chr3 4549634 4549888 -213487270 - AluSq SINE Alu 0 313 65 618 291 180 26 chr3 4549888 4549959 -213487199 - L1MEd LINE L1 -5281 838 779 21 0 0 0 chr3 4550025 4550046 -213487112 + AT_rich Low_complexity Low_complexity 1 21 0 673 223 0 0 chr3 4550091 4550212 -213486946 - FLAM_A SINE Alu -12 121 1 398 305 123 57 chr3 4550284 4550800 -213486358 + L2 LINE L2 2683 3239 -74 647 183 8 16 chr3 4550800 4550926 -213486232 - FLAM_A SINE Alu -4 129 5 398 305 123 57 chr3 4550926 4550994 -213486164 + L2 LINE L2 3239 3301 -12 201 74 0 0 chr3 4551847 4551874 -213485284 + (TA)n Simple_repeat Simple_repeat 1 27 0 1062 139 41 0 chr3 4551874 4552046 -213485112 - AluSg/x SINE Alu 0 312 134 204 350 122 50 chr3 4552085 4552265 -213484893 - MIR SINE MIR -50 212 20 253 282 118 47 chr3 4552636 4552806 -213484352 + MER5A DNA MER1_type 7 188 -1 622 286 104 50 chr3 4554448 4554850 -213482308 + HAL1b LINE L1 344 574 -774 22 35 0 0 chr3 4555417 4555446 -213481712 + AT_rich Low_complexity Low_complexity 1 29 0 479 183 104 24 chr3 4555654 4555818 -213481340 - MER104 DNA MER2_type -3 177 1 318 185 8 100 chr3 4556486 4556616 -213480542 + L1ME4a LINE L1 5966 6083 -38 6700 126 20 53 chr3 4556662 4557934 -213479224 + Tigger3b DNA MER2_type 3 1231 0 302 240 0 94 chr3 4557934 4558030 -213479128 + L1MC4 LINE L1 6617 6703 -1339 243 0 0 0 chr3 4558030 4558057 -213479101 + (TA)n Simple_repeat Simple_repeat 1 27 0 696 183 72 20 chr3 4558588 4558741 -213478417 + MER5A DNA MER1_type 1 161 -28 369 75 0 0 chr3 4558861 4558914 -213478244 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 71 0 0 chr3 4559276 4559318 -213477840 - L1MA10 LINE L1 -10 6324 6283 378 165 13 13 chr3 4559318 4559397 -213477761 + L1MB1 LINE L1 6004 6082 -107 677 159 0 0 chr3 4559461 4559568 -213477590 - AluJb SINE Alu -205 107 1 25 0 0 0 chr3 4559827 4559852 -213477306 + AT_rich Low_complexity Low_complexity 1 25 0 1482 122 215 4 chr3 4559888 4560134 -213477024 + AluSg1 SINE Alu 1 298 -11 549 326 73 55 chr3 4560159 4560542 -213476616 + L2 LINE L2 2919 3308 -5 899 203 115 5 chr3 4560567 4560759 -213476399 - MER58A DNA MER1_type -1 223 11 284 93 0 0 chr3 4560932 4560975 -213476183 - MADE1 DNA Mariner -37 43 1 1279 167 8 16 chr3 4560975 4561232 -213475926 - L1MC3 LINE L1 -24 7761 7507 195 358 20 54 chr3 4561433 4561581 -213475577 + MIR SINE MIR 70 212 -50 925 183 30 35 chr3 4562418 4562620 -213474538 + MER3 DNA MER1_type 9 209 0 448 281 191 20 chr3 4563258 4563457 -213473701 - MIR SINE MIR -6 256 24 528 286 5 77 chr3 4563903 4564167 -213472991 - MIR SINE MIR -8 254 13 195 250 0 0 chr3 4564340 4564380 -213472778 - MIR SINE MIR -73 135 96 438 20 0 0 chr3 4565984 4566035 -213471123 + (CA)n Simple_repeat Simple_repeat 2 52 0 398 309 172 0 chr3 4566813 4567017 -213470141 - MIR SINE MIR -6 256 18 2164 57 4 0 chr3 4568027 4568349 -213468809 - AluY SINE Alu 0 323 1 696 242 55 0 chr3 4568489 4568654 -213468504 + MER5A DNA MER1_type 15 188 -1 2435 52 10 0 chr3 4568883 4569191 -213467967 - AluY SINE Alu 0 311 1 273 128 0 0 chr3 4571462 4571509 -213465649 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 1817 173 7 0 chr3 4571798 4572098 -213465060 - AluJb SINE Alu -10 302 1 809 284 103 36 chr3 4572799 4573923 -213463235 - L1ME LINE L1 -486 5684 4487 5486 176 22 9 chr3 4573934 4575434 -213461724 - L1MA4 LINE L1 0 6482 4967 657 151 0 0 chr3 4575434 4575553 -213461605 + CT-rich Low_complexity Low_complexity 4 122 0 1716 162 22 22 chr3 4575578 4575948 -213461210 - L1MA4 LINE L1 -1355 4973 4604 2097 121 0 0 chr3 4575950 4576251 -213460907 - AluSg SINE Alu 0 301 1 9000 119 6 16 chr3 4576259 4578498 -213458660 - L1PA10 LINE L1 0 6168 3942 7882 180 21 28 chr3 4578506 4580174 -213456984 - L1PA10 LINE L1 -3571 2575 920 3955 171 24 13 chr3 4580176 4581016 -213456142 - L1MA4 LINE L1 -1701 4627 3779 2665 143 56 78 chr3 4581002 4581256 -213455902 - L1MA4 LINE L1 -4065 1263 1005 * 225 0 48 48 chr3 4581256 4581298 -213455860 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1728 176 4 4 chr3 4581299 4581578 -213455580 - AluJb SINE Alu -33 279 1 2665 143 56 78 chr3 4581578 4581707 -213455451 - L1MA4 LINE L1 -4323 1005 875 1622 196 0 19 chr3 4581707 4582024 -213455134 - AluJb SINE Alu -1 311 1 2665 143 56 78 chr3 4582024 4582397 -213454761 - L1MA4 LINE L1 -4453 875 680 539 202 25 10 chr3 4582398 4582662 -213454496 + CT-rich Low_complexity Low_complexity 1 267 0 3719 196 38 6 chr3 4582664 4583352 -213453806 - L1MA4 LINE L1 -4609 719 10 24 53 0 0 chr3 4583486 4583524 -213453634 + AT_rich Low_complexity Low_complexity 1 38 0 507 318 74 56 chr3 4583525 4584063 -213453095 - L1MEd LINE L1 -5306 813 266 343 214 48 68 chr3 4584155 4584199 -213452959 - MER5A DNA MER1_type -77 112 69 312 27 0 0 chr3 4584199 4584236 -213452922 + (TG)n Simple_repeat Simple_repeat 2 38 0 343 214 48 68 chr3 4584236 4584294 -213452864 - MER5A DNA MER1_type -120 69 12 190 205 26 0 chr3 4584714 4584753 -213452405 + L2 LINE L2 3221 3260 -12 379 296 51 23 chr3 4584759 4584935 -213452223 + MIR SINE MIR 17 197 -65 21 0 0 0 chr3 4585015 4585036 -213452122 + AT_rich Low_complexity Low_complexity 1 21 0 277 277 0 0 chr3 4585117 4585129 -213452029 + MER3 DNA MER1_type 37 48 -161 811 212 0 32 chr3 4585129 4585200 -213451958 - MER3 DNA MER1_type -1 208 136 1564 161 94 25 chr3 4585200 4585486 -213451672 + AluJb SINE Alu 1 306 -6 811 212 0 32 chr3 4585486 4585603 -213451555 - MER3 DNA MER1_type -73 136 26 260 174 0 0 chr3 4586934 4586980 -213450178 + L2 LINE L2 3223 3268 -4 2029 106 0 0 chr3 4589125 4589389 -213447769 + AluY SINE Alu 32 295 -16 23 0 0 0 chr3 4590105 4590128 -213447030 + AT_rich Low_complexity Low_complexity 1 23 0 220 302 94 10 chr3 4590820 4590916 -213446242 + L2 LINE L2 3206 3309 -4 491 218 73 8 chr3 4592263 4592387 -213444771 - MER39 LTR ERV1 -575 132 1 535 288 23 28 chr3 4592392 4592569 -213444589 + MIR SINE MIR 79 254 -8 791 242 102 25 chr3 4594330 4594837 -213442321 - MLT1G1 LTR MaLR -1 589 1 744 296 9 5 chr3 4595116 4595332 -213441826 + MIR SINE MIR 46 262 0 847 308 83 11 chr3 4596297 4596840 -213440318 + MLT2F LTR ERVL 1 663 0 2102 138 21 0 chr3 4596953 4597278 -213439880 - Tigger2a DNA MER2_type 0 434 103 1208 118 0 0 chr3 4597320 4597490 -213439668 + AluY SINE Alu 132 301 -10 7235 40 15 0 chr3 4597493 4598458 -213438700 + L1PA5 LINE L1 5175 6152 -2 613 179 0 8 chr3 4598484 4598601 -213438557 - Tigger2a DNA MER2_type -317 117 2 678 314 105 32 chr3 4598640 4599115 -213438043 + L2 LINE L2 2804 3313 0 361 317 0 19 chr3 4600280 4600384 -213436774 + L2 LINE L2 3154 3255 -17 539 276 0 6 chr3 4601367 4601523 -213435635 - L1ME3 LINE L1 -5 6157 6003 462 261 48 35 chr3 4601537 4601847 -213435311 - L1MEc LINE L1 -2803 3623 3310 2036 207 22 12 chr3 4601852 4602258 -213434900 + MER47B DNA MER2_type 1 410 -8 2904 147 36 8 chr3 4602264 4602767 -213434391 + Tigger3(Golem) DNA MER2_type 2513 3029 0 303 121 11 17 chr3 4602767 4602835 -213434323 - L1MA7 LINE L1 -187 6104 6038 387 297 10 35 chr3 4602841 4603043 -213434115 - L1MCa LINE L1 -1923 4503 4307 464 356 25 22 chr3 4603176 4603493 -213433665 - L1MCa LINE L1 -2222 4204 3887 355 293 33 14 chr3 4603528 4603719 -213433439 - L1MCa LINE L1 -2697 3729 3534 1163 158 51 111 chr3 4603783 4604140 -213433018 + MER21A LTR ERV1 1 365 -498 467 221 116 53 chr3 4604297 4604600 -213432558 - L1MCa LINE L1 -4801 1625 1304 30 27 0 0 chr3 4604645 4604682 -213432476 + AT_rich Low_complexity Low_complexity 1 37 0 453 229 46 106 chr3 4604739 4605041 -213432117 + MLT1H LTR MaLR 228 511 -38 399 315 51 30 chr3 4605093 4605328 -213431830 - L1MEc LINE L1 -4277 2330 2091 728 211 65 60 chr3 4605353 4605400 -213431758 + MER58A DNA MER1_type 37 82 -2338 1102 209 73 48 chr3 4605400 4605754 -213431404 + MLT1A1 LTR MaLR 1 363 -2 728 211 65 60 chr3 4605754 4605891 -213431267 + MER58A DNA MER1_type 82 222 -2 492 276 120 31 chr3 4605957 4606497 -213430661 - L1MEc LINE L1 -4732 1694 1107 1640 180 23 3 chr3 4606636 4606936 -213430222 - AluJb SINE Alu -6 306 1 317 348 62 12 chr3 4606968 4607129 -213430029 - L1MEc LINE L1 -6013 594 426 418 51 0 17 chr3 4607389 4607448 -213429710 + (CA)n Simple_repeat Simple_repeat 2 59 0 1708 191 0 3 chr3 4607644 4607948 -213429210 - AluJo SINE Alu -9 303 1 184 320 26 26 chr3 4608747 4608825 -213428333 - MIR SINE MIR -26 236 159 367 225 0 0 chr3 4609277 4609348 -213427810 - MIR SINE MIR -115 147 77 280 230 27 0 chr3 4609603 4609677 -213427481 + MIR SINE MIR 184 259 -3 225 368 123 0 chr3 4609846 4609960 -213427198 - L2 LINE L2 -8 3264 3137 27 0 0 0 chr3 4609980 4610007 -213427151 + AT_rich Low_complexity Low_complexity 1 27 0 2602 125 0 0 chr3 4610308 4610683 -213426475 - THE1C LTR MaLR 0 375 1 3264 247 74 44 chr3 4613116 4613980 -213423178 + L1MC4 LINE L1 6459 7371 -671 1228 202 132 0 chr3 4613980 4614238 -213422920 - AluJo SINE Alu -7 295 4 3264 247 74 44 chr3 4614238 4614594 -213422564 + L1MC4 LINE L1 7371 7715 -327 395 303 30 30 chr3 4615038 4615203 -213421955 + MIR SINE MIR 9 173 -89 2002 117 3 36 chr3 4615400 4615709 -213421449 - AluSx SINE Alu -13 299 1 297 356 0 0 chr3 4615729 4615816 -213421342 - L2 LINE L2 0 3313 3227 528 312 12 18 chr3 4615969 4616139 -213421019 - MIR SINE MIR -65 197 29 214 267 120 13 chr3 4617150 4617225 -213419933 + MER5A DNA MER1_type 34 116 -73 10649 96 9 4 chr3 4617530 4619848 -213417310 - L1PA7 LINE L1 -13 6141 3815 6746 112 8 2 chr3 4619848 4620888 -213416270 - L1PA7 LINE L1 -2751 3395 2350 23900 98 15 8 chr3 4620889 4625267 -213411891 - L1PA7 LINE L1 0 6469 2067 3542 113 12 0 chr3 4625273 4625775 -213411383 - L1PA7 LINE L1 -5262 1199 692 272 297 36 27 chr3 4625775 4625886 -213411272 - MIR SINE MIR -61 147 36 1845 144 34 42 chr3 4627087 4627497 -213409661 - L1MA4 LINE L1 0 6300 5894 597 165 0 10 chr3 4627497 4627600 -213409558 + L1 LINE L1 4871 4972 -1174 239 62 125 21 chr3 4627600 4627648 -213409510 - MLT2A2 LTR ERVL 0 453 401 369 158 0 0 chr3 4627649 4627731 -213409427 + (TA)n Simple_repeat Simple_repeat 2 83 0 2640 72 0 0 chr3 4627733 4628078 -213409080 + HERVL-A1 LTR ERVL 5310 5654 0 2688 108 23 8 chr3 4628078 4628476 -213408682 + MLT2A1 LTR ERVL 1 404 -40 485 224 11 17 chr3 4628487 4628666 -213408492 + (TA)n Simple_repeat Simple_repeat 2 179 0 41160 70 12 5 chr3 4628823 4633643 -213403515 - HERVL LTR ERVL -331 5323 465 2027 135 26 3 chr3 4633643 4633947 -213403211 + AluSq SINE Alu 1 311 -2 41160 70 12 5 chr3 4633947 4634415 -213402743 - HERVL LTR ERVL -5189 465 1 323 57 0 22 chr3 4634415 4634468 -213402690 - MLT2A2 LTR ERVL 0 453 411 190 265 0 20 chr3 4635163 4635212 -213401946 - L2 LINE L2 -16 3256 3209 2435 52 10 0 chr3 4635673 4635981 -213401177 + AluY SINE Alu 1 311 0 696 242 55 0 chr3 4636210 4636375 -213400783 - MER5A DNA MER1_type -1 188 15 2165 57 4 0 chr3 4636515 4636837 -213400321 + AluY SINE Alu 1 323 0 398 309 172 0 chr3 4637847 4638051 -213399107 + MIR SINE MIR 18 256 -6 438 20 0 0 chr3 4638829 4638880 -213398278 + (TG)n Simple_repeat Simple_repeat 2 52 0 195 250 0 0 chr3 4640484 4640524 -213396634 + MIR SINE MIR 96 135 -73 528 286 5 77 chr3 4640697 4640961 -213396197 + MIR SINE MIR 13 254 -8 448 281 191 20 chr3 4641407 4641606 -213395552 + MIR SINE MIR 24 256 -6 925 183 30 35 chr3 4642244 4642446 -213394712 - MER3 DNA MER1_type 0 209 9 195 358 20 54 chr3 4643283 4643431 -213393727 - MIR SINE MIR -50 212 70 1279 167 8 16 chr3 4643632 4643889 -213393269 + L1MC3 LINE L1 7507 7761 -24 284 93 0 0 chr3 4643889 4643932 -213393226 + MADE1 DNA Mariner 1 43 -37 899 203 115 5 chr3 4644105 4644297 -213392861 + MER58A DNA MER1_type 11 223 -1 549 326 73 55 chr3 4644322 4644705 -213392453 - L2 LINE L2 -5 3308 2919 1482 122 215 4 chr3 4644730 4644976 -213392182 - AluSg1 SINE Alu -11 298 1 25 0 0 0 chr3 4645012 4645037 -213392121 + AT_rich Low_complexity Low_complexity 1 25 0 677 159 0 0 chr3 4645296 4645403 -213391755 + AluJb SINE Alu 1 107 -205 392 161 12 12 chr3 4645467 4645548 -213391610 - L1MB1 LINE L1 -107 6082 6002 312 71 0 0 chr3 4645548 4645588 -213391570 + L1MA10 LINE L1 6283 6324 -10 369 75 0 0 chr3 4645950 4646003 -213391155 + (TG)n Simple_repeat Simple_repeat 2 54 0 696 183 72 20 chr3 4646123 4646276 -213390882 - MER5A DNA MER1_type -28 161 1 243 0 0 0 chr3 4646807 4646834 -213390324 + (TA)n Simple_repeat Simple_repeat 1 27 0 302 240 0 94 chr3 4646834 4646930 -213390228 - L1MC4 LINE L1 -1339 6703 6617 6700 126 20 53 chr3 4646930 4648202 -213388956 - Tigger3b DNA MER2_type 0 1231 3 318 185 8 100 chr3 4648248 4648378 -213388780 - L1ME4a LINE L1 -38 6083 5966 479 183 104 24 chr3 4649046 4649210 -213387948 + MER104 DNA MER2_type 1 177 -3 22 35 0 0 chr3 4649418 4649447 -213387711 + AT_rich Low_complexity Low_complexity 1 29 0 622 286 104 50 chr3 4650014 4650416 -213386742 - HAL1b LINE L1 -774 574 344 253 282 118 47 chr3 4652058 4652228 -213384930 - MER5A DNA MER1_type -1 188 7 204 350 122 50 chr3 4652599 4652779 -213384379 + MIR SINE MIR 20 212 -50 1062 139 41 0 chr3 4652818 4652990 -213384168 + AluSg/x SINE Alu 134 312 0 201 74 0 0 chr3 4652990 4653017 -213384141 + (TA)n Simple_repeat Simple_repeat 2 28 0 425 306 123 56 chr3 4653868 4653936 -213383222 - L2 LINE L2 -12 3301 3239 647 183 8 16 chr3 4653936 4654062 -213383096 + FLAM_A SINE Alu 5 129 -4 425 306 123 56 chr3 4654062 4654577 -213382581 - L2 LINE L2 -74 3239 2683 673 223 0 0 chr3 4654649 4654770 -213382388 + FLAM_A SINE Alu 1 121 -12 21 0 0 0 chr3 4654815 4654836 -213382322 + AT_rich Low_complexity Low_complexity 1 21 0 618 291 180 26 chr3 4654902 4654973 -213382185 + L1MEd LINE L1 779 838 -5281 1582 110 12 31 chr3 4654973 4655227 -213381931 + AluSq SINE Alu 65 313 0 618 291 180 26 chr3 4655227 4655659 -213381499 + L1MEd LINE L1 838 1211 -4908 453 330 76 21 chr3 4655659 4655950 -213381208 - L2 LINE L2 -849 2465 2159 8050 12 0 0 chr3 4656018 4657620 -213379538 + L1HS LINE L1 4554 6155 0 934 226 5 5 chr3 4657931 4658121 -213379037 - MER58A DNA MER1_type -1 223 34 31 0 0 0 chr3 4658729 4658760 -213378398 + AT_rich Low_complexity Low_complexity 1 31 0 2081 105 4 0 chr3 4658779 4659055 -213378103 - AluSq SINE Alu -36 277 1 2219 201 62 67 chr3 4659134 4659717 -213377441 + L1MDa LINE L1 26 605 -5935 39 50 0 0 chr3 4659817 4659877 -213377281 + AT_rich Low_complexity Low_complexity 1 60 0 53 30 0 0 chr3 4660842 4660909 -213376249 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr3 4661288 4661320 -213375838 + AT_rich Low_complexity Low_complexity 1 32 0 237 196 0 0 chr3 4661989 4662045 -213375113 + (CACCAT)n Simple_repeat Simple_repeat 4 59 0 329 275 25 0 chr3 4662542 4662622 -213374536 - L2 LINE L2 0 3313 3232 1046 113 94 6 chr3 4663109 4663269 -213373889 - AluSq SINE Alu -11 302 129 21 0 0 0 chr3 4663643 4663664 -213373494 + AT_rich Low_complexity Low_complexity 1 21 0 625 264 121 5 chr3 4663948 4664403 -213372755 - MLT1K LTR MaLR -6 582 24 384 251 106 67 chr3 4665330 4665509 -213371649 - MIR SINE MIR 0 262 77 213 343 14 0 chr3 4665800 4665870 -213371288 + L2 LINE L2 3200 3270 -2 297 250 29 0 chr3 4667736 4667804 -213369354 - MIR SINE MIR -8 254 185 258 347 88 7 chr3 4667845 4667992 -213369166 + MIR3 SINE MIR 38 196 -12 1774 152 0 71 chr3 4668087 4668410 -213368748 + AluJb SINE Alu 1 300 -12 291 259 19 83 chr3 4668545 4668578 -213368580 - MER102a DNA MER1_type -1099 318 284 2127 177 50 17 chr3 4668578 4668996 -213368162 + MSTB1 LTR MaLR 1 432 0 291 259 19 83 chr3 4668996 4669070 -213368088 - MER102a DNA MER1_type -1133 284 218 1979 129 0 36 chr3 4669224 4669533 -213367625 - AluSx SINE Alu -14 298 1 978 116 0 0 chr3 4669545 4669674 -213367484 - AluSq SINE Alu -183 129 1 180 0 0 0 chr3 4670597 4670617 -213366541 + (T)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chr3 4671600 4671628 -213365530 + AT_rich Low_complexity Low_complexity 1 28 0 457 315 99 9 chr3 4672203 4672425 -213364733 - MIR SINE MIR -15 247 6 272 247 13 13 chr3 4672928 4673005 -213364153 + MLT1I LTR MaLR 329 405 -4 401 319 14 35 chr3 4674664 4674808 -213362350 + MER91A DNA MER1_type 2 142 -54 200 304 0 18 chr3 4674856 4674912 -213362246 + MER91A DNA MER1_type 133 187 -3 342 67 0 0 chr3 4675295 4675340 -213361818 + (A)n Simple_repeat Simple_repeat 1 45 0 243 306 194 0 chr3 4675499 4675597 -213361561 + L2 LINE L2 3197 3313 0 624 284 74 16 chr3 4675881 4676124 -213361034 - MIR SINE MIR 0 262 6 446 339 27 27 chr3 4676638 4676821 -213360337 + MER5A DNA MER1_type 2 184 -5 336 255 20 41 chr3 4676842 4676940 -213360218 - MIR3 SINE MIR -37 171 76 201 356 7 68 chr3 4677544 4677690 -213359468 - MIR3 SINE MIR -13 195 59 229 278 11 100 chr3 4677770 4677860 -213359298 - MIR SINE MIR -130 132 51 1467 206 4 4 chr3 4678862 4679129 -213358029 + AluJb SINE Alu 30 296 -16 2012 144 0 0 chr3 4679755 4680046 -213357112 - AluSx SINE Alu -11 301 11 22 0 0 0 chr3 4680649 4680671 -213356487 + AT_rich Low_complexity Low_complexity 1 22 0 1941 192 11 8 chr3 4681321 4681685 -213355473 - MLT1A1 LTR MaLR 0 365 1 319 360 97 23 chr3 4681860 4682160 -213354998 + L2 LINE L2 1735 2056 -1258 347 329 0 0 chr3 4682245 4682324 -213354834 - MER91A DNA MER1_type -116 80 2 288 260 84 58 chr3 4682482 4682636 -213354522 + HAL1b LINE L1 750 907 -441 263 374 39 39 chr3 4682954 4683310 -213353848 - L2 LINE L2 -595 2719 2364 24 0 0 0 chr3 4683946 4683970 -213353188 + AT_rich Low_complexity Low_complexity 1 24 0 1206 283 45 21 chr3 4684000 4684424 -213352734 - MLT1J1 LTR MaLR -11 435 2 267 31 0 0 chr3 4684649 4684681 -213352477 + (CA)n Simple_repeat Simple_repeat 1 32 0 3023 162 0 6 chr3 4685232 4685721 -213351437 + MER66B LTR ERV1 1 486 0 2078 121 0 3 chr3 4686064 4686370 -213350788 - AluSx SINE Alu 0 307 3 2389 69 13 3 chr3 4686419 4686722 -213350436 - AluSg SINE Alu -4 306 1 376 244 12 0 chr3 4686802 4686888 -213350270 + MLT1J1 LTR MaLR 240 326 -120 640 276 82 9 chr3 4686943 4687321 -213349837 - MLT1J1 LTR MaLR -13 424 1 335 335 112 28 chr3 4688006 4688221 -213348937 + MIR SINE MIR 30 262 0 1572 184 10 16 chr3 4688436 4688727 -213348431 + AluJo SINE Alu 1 291 -21 186 43 0 0 chr3 4688727 4688750 -213348408 + (GA)n Simple_repeat Simple_repeat 2 24 0 1572 184 10 16 chr3 4688750 4688763 -213348395 + AluJo SINE Alu 291 303 -9 25 90 0 0 chr3 4689288 4689355 -213347803 + AT_rich Low_complexity Low_complexity 1 67 0 352 338 7 28 chr3 4689804 4689946 -213347212 + MIR SINE MIR 8 146 -116 241 314 183 22 chr3 4690134 4690271 -213346887 + MLT1J2 LTR MaLR 254 412 -38 23 0 0 0 chr3 4691401 4691424 -213345734 + AT_rich Low_complexity Low_complexity 1 23 0 36 53 0 0 chr3 4691552 4691609 -213345549 + AT_rich Low_complexity Low_complexity 1 57 0 4216 148 7 44 chr3 4691683 4692501 -213344657 - L1PA16 LINE L1 -2 6164 5377 273 139 18 4 chr3 4692524 4692581 -213344577 + AluJo SINE Alu 85 136 -166 561 248 83 0 chr3 4692584 4692729 -213344429 + FAM SINE Alu 1 157 -18 3974 144 30 7 chr3 4692745 4693482 -213343676 - Tigger3b DNA MER2_type -477 754 1 236 318 34 34 chr3 4693535 4693623 -213343535 + MIR SINE MIR 32 119 -89 639 191 79 20 chr3 4693653 4693805 -213343353 + MLT1A2 LTR MaLR 1 161 -213 414 0 0 0 chr3 4693826 4693872 -213343286 + (TC)n Simple_repeat Simple_repeat 1 46 0 748 212 19 66 chr3 4693897 4694109 -213343049 + MLT1A2 LTR MaLR 173 374 0 21 36 0 0 chr3 4694756 4694784 -213342374 + AT_rich Low_complexity Low_complexity 1 28 0 476 255 24 34 chr3 4694813 4695021 -213342137 - L1MC/D LINE L1 -1989 5819 5614 22 56 0 0 chr3 4697205 4697241 -213339917 + AT_rich Low_complexity Low_complexity 1 36 0 1939 173 0 0 chr3 4697352 4697658 -213339500 - AluJo SINE Alu -5 307 2 1295 303 48 32 chr3 4697676 4698306 -213338852 + MLT2F LTR ERVL 18 657 -6 26 50 0 0 chr3 4698438 4698478 -213338680 + AT_rich Low_complexity Low_complexity 1 40 0 259 265 73 15 chr3 4698493 4698561 -213338597 + MIR SINE MIR 29 100 -108 2814 13 0 0 chr3 4698927 4699237 -213337921 + AluY SINE Alu 1 310 -1 356 333 50 6 chr3 4700094 4700253 -213336905 - MIR SINE MIR -12 250 85 180 0 0 0 chr3 4700293 4700313 -213336845 + (A)n Simple_repeat Simple_repeat 1 20 0 519 159 24 56 chr3 4700373 4700388 -213336770 - MER53 DNA DNA -67 122 108 2303 189 38 6 chr3 4700388 4700884 -213336274 - MER67D LTR ERV1 -2 512 1 519 159 24 56 chr3 4700884 4700994 -213336164 - MER53 DNA DNA -81 108 1 296 350 8 8 chr3 4702100 4702217 -213334941 - L2 LINE L2 -6 3266 3150 7446 121 21 15 chr3 4702946 4704999 -213332159 - L1PA5 LINE L1 0 6154 4092 1309 168 196 0 chr3 4705209 4705355 -213331803 - AluJo SINE Alu -13 299 183 2119 102 16 7 chr3 4705355 4705658 -213331500 - AluY SINE Alu -5 306 1 1309 168 196 0 chr3 4705658 4705761 -213331397 - AluJo SINE Alu -129 183 1 2051 204 51 44 chr3 4705761 4706311 -213330847 + MLT2B3 LTR ERVL 1 554 0 747 215 82 0 chr3 4706321 4706540 -213330618 - L1M4 LINE L1 -2929 3217 2981 992 120 0 0 chr3 4706573 4706706 -213330452 - AluSq/x SINE Alu -179 133 1 889 183 27 47 chr3 4706733 4706884 -213330274 - L1M4 LINE L1 -3170 2976 2831 1138 217 19 86 chr3 4706884 4707198 -213329960 - AluJb SINE Alu -8 294 2 889 183 27 47 chr3 4707198 4707303 -213329855 - L1M4 LINE L1 -3315 2831 2725 439 304 60 0 chr3 4707319 4707487 -213329671 + L1M4 LINE L1 3656 3833 -2313 2294 93 21 0 chr3 4707487 4707778 -213329380 - AluSg1 SINE Alu -12 297 1 1652 85 16 0 chr3 4707778 4708025 -213329133 - PABL_A-int LTR ERV1 -4546 469 219 439 255 10 0 chr3 4708143 4708241 -213328917 - MIR SINE MIR -154 108 10 907 143 0 0 chr3 4710337 4710470 -213326688 + FLAM_C SINE Alu 1 133 -10 2291 88 7 0 chr3 4710476 4710770 -213326388 + AluSp SINE Alu 1 296 -17 2516 40 3 0 chr3 4711200 4711497 -213325661 - AluY SINE Alu -13 298 1 312 27 0 0 chr3 4713531 4713568 -213323590 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 909 202 51 88 chr3 4715025 4715082 -213322076 - L1M4 LINE L1 -1481 4665 4607 2309 96 3 10 chr3 4715082 4715383 -213321775 + AluSp SINE Alu 1 299 -14 909 202 51 88 chr3 4715383 4715735 -213321423 - L1M4 LINE L1 -1539 4607 4271 455 315 80 5 chr3 4718377 4718577 -213318581 + MIR SINE MIR 48 262 0 2440 162 35 56 chr3 4718967 4719846 -213317312 - L1M4 LINE L1 -439 5745 4856 1863 152 7 14 chr3 4719846 4720167 -213316991 - AluJb SINE Alu 0 319 1 247 313 119 0 chr3 4720546 4720613 -213316545 + MIR SINE MIR 15 89 -173 694 171 8 8 chr3 4720615 4720732 -213316426 + FLAM_C SINE Alu 2 118 -25 2262 39 0 4 chr3 4720739 4720998 -213316160 + AluY SINE Alu 40 297 -14 305 231 196 42 chr3 4721044 4721187 -213315971 - L2 LINE L2 -3 3310 3146 204 342 13 0 chr3 4821821 4821900 -213215258 - MIR SINE MIR -59 149 70 3562 119 12 2 chr3 4822236 4822742 -213214416 - L1PB3 LINE L1 0 6154 5644 812 84 0 19 chr3 4822782 4822889 -213214269 - FLAM_A SINE Alu -16 126 22 1887 128 16 26 chr3 4823735 4824041 -213213117 + AluSx SINE Alu 1 303 -9 533 218 247 6 chr3 4824041 4824211 -213212947 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 4824666 4824792 -213212366 + MIR SINE MIR 20 146 -116 222 338 13 0 chr3 4826804 4826881 -213210277 - MIR SINE MIR -63 145 68 186 293 35 0 chr3 4827610 4827668 -213209490 + MIR3 SINE MIR 112 171 -37 376 303 141 15 chr3 4828375 4828573 -213208585 - MIR SINE MIR 0 262 40 203 79 26 0 chr3 4829591 4829629 -213207529 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1002 146 189 5 chr3 4830472 4830657 -213206501 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 4830820 4830843 -213206315 + AT_rich Low_complexity Low_complexity 1 23 0 2289 112 0 0 chr3 4830871 4831174 -213205984 - AluSx SINE Alu -9 303 1 315 365 0 0 chr3 4831330 4831445 -213205713 - MIR3 SINE MIR -23 185 71 298 163 0 0 chr3 4831445 4831494 -213205664 + L1MC3 LINE L1 7045 7093 -692 291 262 24 12 chr3 4831498 4831582 -213205576 + MLT1F1 LTR MaLR 40 124 -443 2180 187 74 71 chr3 4831583 4832178 -213204980 + L1MC3 LINE L1 7189 7785 0 2220 112 0 13 chr3 4832966 4833269 -213203889 - AluSx SINE Alu -13 299 1 2094 121 0 0 chr3 4834270 4834575 -213202583 + AluSx SINE Alu 1 305 0 520 281 67 12 chr3 4834989 4835153 -213202005 - MER5B DNA MER1_type 0 178 6 276 87 0 43 chr3 4835865 4835911 -213201247 + L2 LINE L2 3195 3238 -75 2162 112 3 0 chr3 4836523 4836818 -213200340 + AluSp SINE Alu 1 296 -17 372 363 57 6 chr3 4837006 4837163 -213199995 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 4837271 4837299 -213199859 + AT_rich Low_complexity Low_complexity 1 28 0 1742 190 7 3 chr3 4837347 4837642 -213199516 + AluSx SINE Alu 1 296 -16 2539 123 5 32 chr3 4841153 4841527 -213195631 - THE1B LTR MaLR 0 364 1 8333 128 30 8 chr3 4841856 4843168 -213193990 - Tigger1 DNA MER2_type 0 2418 1079 3672 135 107 6 chr3 4843157 4843793 -213193365 - Tigger1 DNA MER2_type -1656 762 63 * 279 284 0 0 chr3 4845272 4845346 -213191812 + C-rich Low_complexity Low_complexity 1 74 0 1675 112 0 16 chr3 4845873 4846115 -213191043 + AluSg/x SINE Alu 73 310 -2 1148 198 105 0 chr3 4846123 4846381 -213190777 - L1M4 LINE L1 -1073 5073 4789 277 180 16 141 chr3 4846802 4846930 -213190228 + MLT1H LTR MaLR 438 549 0 376 249 115 91 chr3 4847018 4847076 -213190082 - L1ME4a LINE L1 -232 5889 5834 1887 135 7 0 chr3 4847076 4847357 -213189801 + AluSg SINE Alu 13 295 -15 376 249 115 91 chr3 4847357 4847551 -213189607 - L1ME4a LINE L1 -287 5834 5631 2097 109 10 7 chr3 4847798 4848092 -213189066 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 4848197 4848223 -213188935 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 209 173 154 19 chr3 4848310 4848362 -213188796 + L2 LINE L2 3252 3310 -3 2240 100 0 3 chr3 4848382 4848671 -213188487 + AluSx SINE Alu 1 288 -24 276 284 0 68 chr3 4851467 4851555 -213185603 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 4852741 4852767 -213184391 + (TTG)n Simple_repeat Simple_repeat 2 27 0 248 385 57 0 chr3 4853963 4854085 -213183073 + MIR SINE MIR 21 149 -113 1029 186 9 24 chr3 4855669 4855810 -213181348 + MER3 DNA MER1_type 2 141 -68 1936 143 7 7 chr3 4855810 4856097 -213181061 + AluSx SINE Alu 1 287 -25 1029 186 9 24 chr3 4856097 4856165 -213180993 + MER3 DNA MER1_type 141 208 -1 299 269 86 30 chr3 4856259 4856493 -213180665 + L1ME4a LINE L1 5873 6119 -2 685 224 39 86 chr3 4856580 4856835 -213180323 + MER112 DNA MER1_type 6 248 -12 1263 124 0 43 chr3 4856966 4857152 -213180006 + AluSx SINE Alu 1 178 -134 424 246 53 18 chr3 4857815 4857929 -213179229 + MIR3 SINE MIR 14 131 -77 1856 145 35 0 chr3 4858953 4859125 -213178033 - AluSx SINE Alu -13 299 112 387 0 0 0 chr3 4859125 4859168 -213177990 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1856 145 35 0 chr3 4859168 4859284 -213177874 - AluSx SINE Alu -200 112 1 257 109 455 0 chr3 4859673 4859728 -213177430 + MADE1 DNA Mariner 1 80 0 2170 100 7 0 chr3 4860179 4860490 -213176668 + AluSx SINE Alu 1 313 0 1900 167 0 0 chr3 4860509 4860797 -213176361 - AluJb SINE Alu -19 293 6 939 117 7 15 chr3 4860797 4860934 -213176224 - AluJb SINE Alu -176 136 1 339 314 58 19 chr3 4861092 4861248 -213175910 - MIR3 SINE MIR -8 200 39 2003 140 10 0 chr3 4861444 4861737 -213175421 + AluSx SINE Alu 1 296 -16 210 333 0 43 chr3 4862312 4862381 -213174777 - L3 LINE CR1 -4 1573 1508 981 195 20 20 chr3 4862440 4862640 -213174518 - MER20 DNA MER1_type -19 200 1 760 222 102 9 chr3 4863080 4863296 -213173862 + MIR SINE MIR 14 249 -13 206 310 113 0 chr3 4863645 4863716 -213173442 + MIR SINE MIR 29 107 -155 2308 97 0 3 chr3 4863851 4864161 -213172997 - AluY SINE Alu -2 309 1 236 250 62 38 chr3 4864265 4864345 -213172813 - MIR SINE MIR -81 127 46 2135 116 3 16 chr3 4865139 4865449 -213171709 + AluSx SINE Alu 4 309 -3 3241 160 30 3 chr3 4865450 4866056 -213171102 + L1MB2 LINE L1 5550 6171 0 544 241 195 0 chr3 4866111 4866285 -213170873 - MIR SINE MIR -6 256 49 557 268 87 70 chr3 4866561 4866860 -213170298 - MER5C DNA MER1_type 0 324 21 259 348 38 52 chr3 4867052 4867262 -213169896 - L2 LINE L2 -544 2770 2564 1616 191 68 28 chr3 4868206 4868403 -213168755 - L1MD2 LINE L1 -1 6358 6170 2260 107 3 0 chr3 4868403 4868713 -213168445 - AluSx SINE Alu -1 311 1 1616 191 68 28 chr3 4868713 4868914 -213168244 - L1MD2 LINE L1 -189 6170 5944 279 245 96 11 chr3 4868914 4869008 -213168150 + MER69 DNA AcHobo 2425 2526 0 2523 53 0 22 chr3 4869290 4869608 -213167550 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 4869790 4869932 -213167226 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 4869999 4870021 -213167137 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 4870056 4870185 -213166973 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 4870256 4870518 -213166640 + AluSc SINE Alu 5 292 -17 280 217 0 17 chr3 4870872 4870932 -213166226 + MER91 DNA MER1_type 81 139 -1 209 296 14 28 chr3 4871557 4871628 -213165530 + MIR SINE MIR 20 89 -119 232 235 123 0 chr3 4871817 4871898 -213165260 + MIR3 SINE MIR 102 192 -16 292 211 273 19 chr3 4872657 4872818 -213164340 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 4872953 4873166 -213163992 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 4873208 4873399 -213163759 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 4873435 4873979 -213163179 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 4874250 4874276 -213162882 + AT_rich Low_complexity Low_complexity 1 26 0 360 232 36 94 chr3 4875337 4875445 -213161713 + L2 LINE L2 3182 3282 -31 2557 98 30 6 chr3 4875445 4875811 -213161347 - THE1C LTR MaLR 0 375 1 360 232 36 94 chr3 4875811 4875840 -213161318 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 4875844 4875994 -213161164 + MIR SINE MIR 34 183 -79 1688 188 40 3 chr3 4876247 4876572 -213160586 + MER1B DNA MER1_type 1 337 0 245 295 105 11 chr3 4876663 4876758 -213160400 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 4877345 4877469 -213159689 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 4877506 4877648 -213159510 - L1MC/D LINE L1 -1445 4701 4531 1890 151 18 0 chr3 4878544 4878829 -213158329 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 4879069 4879159 -213157999 + MIR SINE MIR 13 105 -157 1055 130 0 34 chr3 4882312 4882489 -213154669 + AluSg/x SINE Alu 124 294 -15 428 255 135 20 chr3 4887610 4887810 -213149348 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 4888320 4888444 -213148714 - MIR3 SINE MIR -12 196 87 2430 69 3 0 chr3 4889113 4889417 -213147741 - AluY SINE Alu -6 305 1 265 368 60 8 chr3 4889527 4889644 -213147514 + L2 LINE L2 3191 3313 0 240 274 140 18 chr3 4890711 4890768 -213146390 + L1MC/D LINE L1 5352 5401 -2407 1682 152 72 4 chr3 4890768 4891045 -213146113 - AluSx SINE Alu -16 296 1 240 274 140 18 chr3 4891045 4891151 -213146007 + L1MC/D LINE L1 5401 5535 -2273 462 306 0 0 chr3 4891323 4891434 -213145724 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 4892153 4892358 -213144800 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 4892626 4892788 -213144370 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 4893090 4893236 -213143922 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 4893283 4893339 -213143819 + (TG)n Simple_repeat Simple_repeat 1 56 0 487 227 302 0 chr3 4893383 4893555 -213143603 - MIR SINE MIR -10 252 29 2189 71 39 3 chr3 4893557 4893840 -213143318 - AluY SINE Alu -18 293 1 1877 154 3 13 chr3 4894612 4894923 -213142235 + AluJb SINE Alu 1 308 -4 206 342 57 19 chr3 4894940 4895098 -213142060 - L2 LINE L2 -192 3080 2917 432 288 113 19 chr3 4895440 4895652 -213141506 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 4895839 4896120 -213141038 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 4896124 4896951 -213140207 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 4897471 4897560 -213139598 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 4897691 4897997 -213139161 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 4898350 4898856 -213138302 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 4899463 4899688 -213137470 + MER112 DNA MER1_type 4 260 0 1683 161 17 30 chr3 4901073 4901372 -213135786 - AluJb SINE Alu -17 295 1 7603 15 0 0 chr3 4901944 4903177 -213133981 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 4903413 4903547 -213133611 + MER33 DNA MER1_type 1 145 -2440 1752 171 20 3 chr3 4903547 4903840 -213133318 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 4903840 4904055 -213133103 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 4904282 4904447 -213132711 - MER5B DNA MER1_type -1 177 11 293 367 17 0 chr3 4904735 4904855 -213132303 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 4905044 4905174 -213131984 - FRAM SINE Alu -17 159 20 583 99 148 10 chr3 4905223 4905324 -213131834 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 4905329 4905352 -213131806 + AT_rich Low_complexity Low_complexity 1 23 0 4246 91 21 21 chr3 4905823 4906014 -213131144 + PABL_A LTR ERV1 1 191 -469 2343 93 0 7 chr3 4906014 4906324 -213130834 - AluSx SINE Alu -4 308 1 4246 91 21 21 chr3 4906324 4906783 -213130375 + PABL_A LTR ERV1 190 651 -9 1742 97 45 0 chr3 4908391 4908659 -213128499 - AluSq SINE Alu -9 304 25 888 210 189 7 chr3 4909247 4909461 -213127697 + MER2 DNA MER2_type 1 283 -61 2305 92 0 0 chr3 4909461 4909756 -213127402 - AluSx SINE Alu -13 299 5 888 210 189 7 chr3 4909756 4909832 -213127326 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 4909832 4909879 -213127279 + (GA)n Simple_repeat Simple_repeat 1 48 0 2595 258 52 18 chr3 4909907 4910937 -213126221 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 4911039 4911324 -213125834 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 4911324 4911346 -213125812 + AT_rich Low_complexity Low_complexity 1 22 0 2477 233 26 51 chr3 4911346 4911386 -213125772 + L1ME1 LINE L1 5403 5443 -723 2053 131 7 0 chr3 4911386 4911677 -213125481 - AluSg SINE Alu -17 293 1 2477 233 26 51 chr3 4911677 4912180 -213124978 + L1ME1 LINE L1 5443 5957 -209 2189 113 0 0 chr3 4912180 4912473 -213124685 + AluSg SINE Alu 1 293 -17 2477 233 26 51 chr3 4912473 4912656 -213124502 + L1ME1 LINE L1 5957 6111 -55 1774 146 153 42 chr3 4912656 4912729 -213124429 - MSTA LTR MaLR 0 428 365 2413 52 0 29 chr3 4912729 4913035 -213124123 + AluY SINE Alu 1 297 -14 1774 146 153 42 chr3 4913035 4913346 -213123812 - MSTA LTR MaLR -63 365 1 2477 233 26 51 chr3 4913346 4913395 -213123763 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 4913861 4914156 -213123002 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4914495 4914521 -213122637 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 4914596 4914772 -213122386 - MIR SINE MIR -32 230 32 609 178 8 0 chr3 4915112 4915230 -213121928 - MLT1D LTR MaLR 0 505 387 2271 104 0 0 chr3 4915439 4915737 -213121421 - AluSx SINE Alu -3 309 12 1527 195 3 36 chr3 4915960 4916268 -213120890 + AluJo SINE Alu 1 298 -14 870 168 0 0 chr3 4916312 4916437 -213120721 + AluJb SINE Alu 1 125 -187 1835 158 18 0 chr3 4917298 4917582 -213119576 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 4917592 4917673 -213119485 + (TA)n Simple_repeat Simple_repeat 1 84 0 216 144 22 0 chr3 4917945 4917991 -213119167 + MIR SINE MIR 99 146 -62 2005 114 0 24 chr3 4918106 4918415 -213118743 + AluSx SINE Alu 3 304 0 4457 183 19 25 chr3 4918702 4919582 -213117576 - L1MB8 LINE L1 0 6178 5304 833 199 6 0 chr3 4919585 4919741 -213117417 - FRAM SINE Alu 0 40 1 641 133 23 8 chr3 4919743 4919871 -213117287 - L1MB8 LINE L1 -830 5316 5187 610 264 7 14 chr3 4919871 4920040 -213117118 - AluY SINE Alu 0 301 134 1788 192 69 38 chr3 4920743 4921151 -213116007 + L1ME1 LINE L1 4902 5341 -825 2198 124 7 0 chr3 4921151 4921458 -213115700 + AluSx SINE Alu 1 309 -3 1788 192 69 38 chr3 4921458 4921635 -213115523 + L1ME1 LINE L1 5341 5511 -655 512 169 24 0 chr3 4921639 4921722 -213115436 + MLT1D LTR MaLR 4 88 -417 1115 154 58 92 chr3 4921765 4922099 -213115059 - AluJb SINE Alu 0 324 1 1308 239 84 16 chr3 4922111 4922479 -213114679 + MLT1D LTR MaLR 113 505 0 603 228 8 0 chr3 4922489 4922616 -213114542 + L1ME1 LINE L1 5518 5645 -521 1939 172 42 15 chr3 4922660 4923062 -213114096 + L1ME1 LINE L1 5747 6159 -7 477 40 40 0 chr3 4923070 4923146 -213114012 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 1893 147 0 13 chr3 4923304 4923604 -213113554 + AluSx SINE Alu 1 296 -16 187 235 0 0 chr3 4923604 4923638 -213113520 - MIR3 SINE MIR -24 184 151 2164 115 81 32 chr3 4923698 4924045 -213113113 + THE1B LTR MaLR 1 364 0 5243 67 1 3 chr3 4924045 4924703 -213112455 + THE1B-int LTR MaLR 1 657 -923 1448 155 4 52 chr3 4924703 4924955 -213112203 + THE1B LTR MaLR 125 364 0 285 264 110 110 chr3 4924956 4925183 -213111975 - MIR SINE MIR -32 230 4 456 240 108 16 chr3 4925342 4925471 -213111687 - MIR3 SINE MIR -48 160 20 1299 201 0 76 chr3 4925672 4925880 -213111278 + AluJo SINE Alu 1 180 -132 2055 182 12 6 chr3 4925880 4926221 -213110937 + MER61A LTR ERV1 1 343 0 1299 201 0 76 chr3 4926221 4926315 -213110843 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 4926315 4926345 -213110813 + AT_rich Low_complexity Low_complexity 1 30 0 382 296 23 109 chr3 4927057 4927314 -213109844 - MIR SINE MIR -9 253 19 244 291 0 25 chr3 4927485 4927564 -213109594 - MIR3 SINE MIR 0 208 132 250 229 148 0 chr3 4927567 4927628 -213109530 - L2 LINE L2 -2 3270 3201 375 269 53 33 chr3 4928475 4928639 -213108519 - LTR43 LTR ERV1 -207 472 154 412 272 72 56 chr3 4928840 4929035 -213108123 + MLT1K LTR MaLR 224 421 -167 871 316 78 22 chr3 4929245 4929844 -213107314 + L1ME4a LINE L1 5348 5980 -141 1585 259 14 11 chr3 4929954 4930313 -213106845 + MLT1A2 LTR MaLR 1 360 -14 333 183 42 0 chr3 4930739 4930810 -213106348 + MER116 DNA Mariner 1 74 -6 2075 128 6 10 chr3 4932547 4932891 -213104267 - AluSx SINE Alu 0 343 1 234 222 139 28 chr3 4933492 4933600 -213103558 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 4934282 4934727 -213102431 - MLT1D LTR MaLR 0 505 46 1649 183 62 45 chr3 4934729 4934910 -213102248 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 4934910 4935552 -213101606 + LTR9 LTR ERV1 1 612 0 1649 183 62 45 chr3 4935552 4935662 -213101496 - MLT2D LTR ERVL -179 235 128 2393 60 0 13 chr3 4935662 4935961 -213101197 + AluY SINE Alu 1 295 -16 1649 183 62 45 chr3 4935961 4936072 -213101086 - MLT2D LTR ERVL -286 128 1 237 143 24 24 chr3 4936080 4936122 -213101036 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 4936139 4936329 -213100829 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 4936582 4936664 -213100494 - L2 LINE L2 -2 3270 3192 214 308 55 62 chr3 4937205 4937278 -213099880 - MIR SINE MIR -46 216 144 2289 83 48 0 chr3 4937278 4937567 -213099591 - AluSc SINE Alu -6 303 1 214 308 55 62 chr3 4937567 4937639 -213099519 - MIR SINE MIR -118 144 72 4187 118 24 5 chr3 4938262 4938853 -213098305 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 4938924 4939096 -213098062 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 4939186 4939484 -213097674 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 4939484 4940009 -213097149 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 4940009 4940223 -213096935 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 4940491 4940620 -213096538 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 4942027 4942427 -213094731 - LTR47A LTR ERVL 0 452 1 4812 139 44 65 chr3 4942439 4943920 -213093238 - MER83B-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 4943921 4943976 -213093182 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 4943980 4944009 -213093149 + (TG)n Simple_repeat Simple_repeat 2 30 0 1819 116 41 7 chr3 4944029 4944323 -213092835 - MLT2A1 LTR ERVL -140 304 1 4759 221 82 41 chr3 4944323 4945322 -213091836 - MER83B-int LTR ERV1 -2026 2165 1209 216 0 0 0 chr3 4945322 4945346 -213091812 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 891 129 0 30 chr3 4945348 4945480 -213091678 - FLAM_C SINE Alu -5 128 1 4759 221 82 41 chr3 4945480 4945701 -213091457 - MER83B-int LTR ERV1 -2982 1209 891 1570 181 4 0 chr3 4945704 4945985 -213091173 - MER41B LTR ERV1 -353 282 1 699 171 43 41 chr3 4946002 4946196 -213090962 - MER83B-int LTR ERV1 -2590 2290 2009 307 293 75 34 chr3 4946338 4946485 -213090673 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 4946499 4946517 -213090641 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 4946517 4946889 -213090269 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 4946889 4947255 -213089903 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 4947271 4947477 -213089681 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 4947993 4948021 -213089137 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 4948021 4948324 -213088834 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 4948346 4948430 -213088728 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 4948661 4948747 -213088411 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 4948747 4949435 -213087723 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 4949435 4949841 -213087317 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 4949962 4950202 -213086956 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 4950620 4950661 -213086497 + AT_rich Low_complexity Low_complexity 1 41 0 1291 243 14 3 chr3 4950661 4950945 -213086213 + AluJb SINE Alu 1 287 -15 243 0 0 0 chr3 4950994 4951021 -213086137 + (CA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 4952342 4952363 -213084795 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 4952847 4953287 -213083871 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 4953380 4953444 -213083714 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 4953447 4953487 -213083671 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 4953487 4953587 -213083571 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 4953501 4953598 -213083560 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 4953637 4954101 -213083057 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 4955464 4955665 -213081493 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 4956983 4957424 -213079734 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 4957433 4957838 -213079320 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 4957838 4958049 -213079109 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 4958388 4958518 -213078640 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 4958689 4958747 -213078411 + MIR3 SINE MIR 8 62 -146 4922 172 27 34 chr3 4958857 4960243 -213076915 + L1MB3 LINE L1 4810 6181 -2 2351 132 33 33 chr3 4961767 4961836 -213075322 - THE1B LTR MaLR 0 364 296 1994 125 3 14 chr3 4961836 4962133 -213075025 + AluSx SINE Alu 1 294 -18 2351 132 33 33 chr3 4962133 4962427 -213074731 - THE1B LTR MaLR -67 297 1 254 336 70 31 chr3 4963199 4963327 -213073831 + L2 LINE L2 3132 3264 -8 1928 147 3 13 chr3 4963562 4963875 -213073283 - AluJb SINE Alu -2 310 1 1721 170 10 10 chr3 4964809 4965109 -213072049 + AluJo SINE Alu 1 300 -12 1274 177 42 103 chr3 4965124 4965435 -213071723 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 4965507 4965587 -213071571 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 4965679 4966044 -213071114 + THE1B LTR MaLR 1 364 0 624 317 176 32 chr3 4966047 4966388 -213070770 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 4967494 4967632 -213069526 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 4967688 4967840 -213069318 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 4968143 4968234 -213068924 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 4968234 4968555 -213068603 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 4968555 4968697 -213068461 - Charlie8 DNA MER1_type -218 123 2 5415 129 16 5 chr3 4968967 4969783 -213067375 - L1MC1 LINE L1 0 6333 5509 442 306 25 13 chr3 4970837 4970994 -213066164 + MIR SINE MIR 104 262 0 337 258 13 0 chr3 4971175 4971262 -213065896 + MIR SINE MIR 40 126 -92 311 301 68 20 chr3 4971263 4971409 -213065749 + MIR SINE MIR 49 201 -61 993 215 45 0 chr3 4971655 4971855 -213065303 + MER3 DNA MER1_type 1 209 0 2255 99 3 10 chr3 4972376 4972690 -213064468 + AluSx SINE Alu 1 312 0 580 294 99 14 chr3 4972865 4973086 -213064072 + MIR SINE MIR 18 257 -5 261 119 48 0 chr3 4973915 4973957 -213063201 + MLT1D LTR MaLR 308 351 -154 * 1154 164 116 58 chr3 4973933 4974244 -213062914 - MLT1D LTR MaLR -165 340 12 817 258 33 16 chr3 4974329 4974511 -213062647 + MER5A DNA MER1_type 1 185 -4 3242 138 14 68 chr3 4974812 4975168 -213061990 - LTR26B LTR ERV1 0 531 214 1604 174 19 47 chr3 4975168 4975485 -213061673 - AluJb SINE Alu -4 308 1 3242 138 14 68 chr3 4975485 4975686 -213061472 - LTR26B LTR ERV1 -317 214 4 395 259 114 32 chr3 4975852 4976010 -213061148 - MIR3 SINE MIR 0 208 38 959 138 0 7 chr3 4976405 4976550 -213060608 - AluSg/x SINE Alu -30 279 136 438 333 0 0 chr3 4977669 4977780 -213059378 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 4977788 4977811 -213059347 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 4977870 4978257 -213058901 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 4979154 4979304 -213057854 - MER5A DNA MER1_type -10 179 1 216 210 65 32 chr3 4979324 4979386 -213057772 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 4979414 4979449 -213057709 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 360 364 23 6 chr3 4979824 4980000 -213057158 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 4980092 4980639 -213056519 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 4980819 4980893 -213056265 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 4981138 4981244 -213055914 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 4981620 4981773 -213055385 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 4982680 4982735 -213054423 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 4982737 4982870 -213054288 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 4982926 4983003 -213054155 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 4983372 4983439 -213053719 - L2 LINE L2 -7 3265 3198 2205 129 3 0 chr3 4983606 4983916 -213053242 + AluSq SINE Alu 1 311 -2 1215 260 59 52 chr3 4984006 4984467 -213052691 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 4984489 4984553 -213052605 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 4984553 4984947 -213052211 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 4985024 4985502 -213051656 - LTR50 LTR ERVL 0 795 124 1100 181 121 92 chr3 4985644 4986161 -213050997 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 4986179 4986366 -213050792 - MIR SINE MIR -21 241 47 1234 191 17 39 chr3 4987275 4987506 -213049652 - AluJo SINE Alu -86 226 1 887 211 80 0 chr3 4987506 4987681 -213049477 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 4989261 4989290 -213047868 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 4989768 4989883 -213047275 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 4990235 4990301 -213046857 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 4990551 4990614 -213046544 + (TG)n Simple_repeat Simple_repeat 2 64 0 366 267 0 11 chr3 4990614 4990704 -213046454 - LTR67 LTR ERVL -9 548 460 345 235 43 17 chr3 4990713 4990828 -213046330 - L1ME LINE L1 -374 5747 5630 294 290 30 53 chr3 4991360 4991491 -213045667 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 4992219 4992278 -213044880 + (TA)n Simple_repeat Simple_repeat 2 60 0 742 249 73 96 chr3 4992323 4992725 -213044433 + MLT1I LTR MaLR 1 402 -7 209 296 59 89 chr3 4992734 4992869 -213044289 - MIR SINE MIR -61 147 17 468 0 0 0 chr3 4994050 4994102 -213043056 + (CA)n Simple_repeat Simple_repeat 2 53 0 449 301 65 37 chr3 4994116 4994362 -213042796 - Charlie8 DNA MER1_type -2160 257 5 337 195 26 26 chr3 4994887 4994964 -213042194 - MLT1L LTR MaLR -536 79 3 194 298 0 0 chr3 4994979 4995036 -213042122 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 4995113 4995141 -213042017 + AT_rich Low_complexity Low_complexity 1 28 0 1106 267 70 26 chr3 4995174 4995739 -213041419 - L2 LINE L2 -159 3154 2570 1789 164 7 20 chr3 4995768 4996066 -213041092 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 4996066 4996088 -213041070 + AT_rich Low_complexity Low_complexity 1 22 0 184 310 127 35 chr3 5097079 5097221 -212939937 + L2 LINE L2 3150 3304 -9 740 259 37 27 chr3 5097261 5097555 -212939603 - L1M4 LINE L1 -981 5165 4869 1243 194 3 54 chr3 5097665 5097980 -212939178 - AluY SINE Alu 0 311 13 4874 161 17 25 chr3 5098384 5099346 -212937812 + L1P3 LINE L1 10 1069 -5392 6117 94 6 0 chr3 5099346 5100204 -212936954 + L1PA7 LINE L1 5277 6139 -15 193 176 33 33 chr3 5100204 5100295 -212936863 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 432 128 41 23 chr3 5100307 5100479 -212936679 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 714 122 47 6 chr3 5100498 5100670 -212936488 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 0 0 0 chr3 5100670 5100696 -212936462 + AT_rich Low_complexity Low_complexity 1 26 0 556 142 7 7 chr3 5100698 5100839 -212936319 + (TA)n Simple_repeat Simple_repeat 2 142 0 318 336 0 25 chr3 5100853 5100972 -212936186 - L1MC4 LINE L1 -1339 6703 6588 438 130 28 0 chr3 5100972 5101080 -212936078 + (TA)n Simple_repeat Simple_repeat 1 111 0 10561 125 13 2 chr3 5101180 5102862 -212934296 + L1P3 LINE L1 1269 2968 -3178 7461 86 11 1 chr3 5102840 5104308 -212932850 + L1P3 LINE L1 4287 5764 -390 * 1721 136 0 0 chr3 5104408 5104651 -212932507 + AluSq SINE Alu 55 297 -16 389 307 67 11 chr3 5105405 5105584 -212931574 - MIR SINE MIR -11 251 63 316 286 133 41 chr3 5106075 5106169 -212930989 + MIR SINE MIR 34 118 -144 1550 222 25 73 chr3 5106169 5106700 -212930458 + MLT1D LTR MaLR 1 505 0 316 286 133 41 chr3 5106700 5106801 -212930357 + MIR SINE MIR 118 247 -15 24 53 0 0 chr3 5106826 5106864 -212930294 + AT_rich Low_complexity Low_complexity 1 38 0 2067 149 0 0 chr3 5108947 5109249 -212927909 - AluSq SINE Alu -11 302 1 23 54 0 0 chr3 5109389 5109426 -212927732 + AT_rich Low_complexity Low_complexity 1 37 0 2816 203 50 14 chr3 5109726 5109864 -212927294 - L1MB7 LINE L1 -7 6177 6045 183 42 0 0 chr3 5109864 5109888 -212927270 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2816 203 50 14 chr3 5109888 5110415 -212926743 - L1MB7 LINE L1 -139 6045 5488 4875 212 44 20 chr3 5110419 5111899 -212925259 - L1MB7 LINE L1 -724 5450 3946 308 172 0 16 chr3 5111907 5111971 -212925187 + L1MD2 LINE L1 6275 6337 -22 26 0 0 0 chr3 5111978 5112004 -212925154 + AT_rich Low_complexity Low_complexity 1 26 0 400 269 90 19 chr3 5113207 5113363 -212923795 - MIR SINE MIR -76 186 20 22 0 0 30 chr3 5113466 5113482 -212923676 + AT_rich Low_complexity Low_complexity 1 16 -16 2267 58 3 48 chr3 5113482 5113795 -212923363 + AluY SINE Alu 13 311 0 22 0 0 30 chr3 5113795 5113811 -212923347 + AT_rich Low_complexity Low_complexity 16 32 0 4077 210 76 49 chr3 5115234 5116994 -212920164 - MER52A LTR ERV1 -12 1743 1 562 302 62 18 chr3 5117425 5117766 -212919392 - HAL1 LINE L1 -1489 1018 663 26 30 0 0 chr3 5118044 5118077 -212919081 + AT_rich Low_complexity Low_complexity 1 33 0 1701 174 0 0 chr3 5118232 5118533 -212918625 + AluJb SINE Alu 1 301 0 299 189 0 0 chr3 5120145 5120198 -212916960 - HsTC2 DNA Tc2 -5 1893 1841 824 199 70 25 chr3 5120202 5120403 -212916755 + LTR50 LTR ERVL 1 210 -585 1052 287 36 27 chr3 5120423 5120901 -212916257 - L1M4 LINE L1 -898 5248 4767 294 245 47 9 chr3 5120929 5121035 -212916123 + CT-rich Low_complexity Low_complexity 6 115 0 721 279 47 45 chr3 5121036 5121070 -212916088 - L1M4 LINE L1 -1445 4701 4669 1233 175 55 7 chr3 5121070 5121379 -212915779 + MER33 DNA MER1_type 1 324 0 721 279 47 45 chr3 5121379 5121924 -212915234 - L1M4 LINE L1 -1477 4669 4121 1473 285 22 15 chr3 5121929 5122463 -212914695 - L1M4 LINE L1 -2074 4072 3535 579 217 1 35 chr3 5122463 5122690 -212914468 + L1M2 LINE L1 2735 2952 -3896 915 194 23 23 chr3 5122927 5123102 -212914056 - AluJo SINE Alu -137 175 1 369 268 41 24 chr3 5123115 5123238 -212913920 - MIR SINE MIR -56 206 82 366 297 82 15 chr3 5123238 5123433 -212913725 + L1MC/D LINE L1 5022 5229 -917 528 304 94 24 chr3 5123515 5123896 -212913262 + L1MC/D LINE L1 5317 5724 -2084 14901 99 14 6 chr3 5123981 5126175 -212910983 - L1P LINE L1 -1437 4709 2500 11554 29 3 0 chr3 5126177 5128353 -212908805 - L1PA2 LINE L1 0 6155 4001 16457 37 1 1 chr3 5128353 5130389 -212906769 + L1PA2 LINE L1 1978 4012 -2134 887 83 0 8 chr3 5130383 5130516 -212906642 - L1P LINE L1 -3635 2511 2380 * 1901 181 52 11 chr3 5130498 5130962 -212906196 - L1P LINE L1 -4418 1728 1246 23 54 0 0 chr3 5131796 5131833 -212905325 + AT_rich Low_complexity Low_complexity 1 37 0 1137 163 0 100 chr3 5132238 5132489 -212904669 + MER21B LTR ERV1 1 226 -637 1405 188 65 53 chr3 5132497 5132525 -212904633 + MER21B LTR ERV1 503 529 -334 2520 205 43 76 chr3 5132525 5133245 -212903913 - MER72 LTR ERV1 0 722 26 2531 59 0 3 chr3 5133245 5133550 -212903608 - AluY SINE Alu -7 304 1 2520 205 43 76 chr3 5133550 5133576 -212903582 - MER72 LTR ERV1 -696 26 1 1405 188 65 53 chr3 5133576 5133903 -212903255 + MER21B LTR ERV1 529 862 -1 2150 106 3 3 chr3 5134133 5134417 -212902741 - AluSq SINE Alu -27 286 3 386 234 79 106 chr3 5134489 5134792 -212902366 - L1ME4a LINE L1 -63 6058 5764 604 216 35 0 chr3 5134858 5134974 -212902184 + MER101B LTR ERV1 1 120 -450 275 59 0 0 chr3 5135008 5135042 -212902116 + MER21B LTR ERV1 672 705 -158 1994 134 0 26 chr3 5135763 5136069 -212901089 + AluSq SINE Alu 1 298 -15 3491 130 14 40 chr3 5136165 5136790 -212900368 - MER4B LTR ERV1 0 610 2 23 33 0 0 chr3 5136829 5136859 -212900299 + AT_rich Low_complexity Low_complexity 1 30 0 2446 65 3 7 chr3 5136999 5137308 -212899850 - AluY SINE Alu -3 308 1 1478 290 92 56 chr3 5137358 5138342 -212898816 + LTR28 LTR ERV1 1 1020 0 259 310 0 109 chr3 5138806 5138980 -212898178 - MIR SINE MIR -71 191 37 366 271 9 0 chr3 5139280 5139387 -212897771 + MER34 LTR ERV1 1 108 -434 396 108 95 14 chr3 5139403 5139477 -212897681 + LTR29 LTR ERV1 151 230 -392 1171 141 20 0 chr3 5139482 5139681 -212897477 + LTR29 LTR ERV1 190 392 -230 1211 145 86 23 chr3 5139681 5139902 -212897256 + AluJo SINE Alu 64 298 -14 974 225 36 0 chr3 5139919 5140141 -212897017 + LTR49 LTR ERV1 366 595 0 470 181 0 43 chr3 5140293 5140481 -212896677 + (TA)n Simple_repeat Simple_repeat 1 180 0 8568 208 28 19 chr3 5140612 5140630 -212896528 + L1 LINE L1 2269 2285 -3861 4212 120 5 13 chr3 5140630 5141247 -212895911 - LTR9 LTR ERV1 0 612 1 8568 208 28 19 chr3 5141247 5143323 -212893835 + L1 LINE L1 2285 4383 -1763 247 286 71 11 chr3 5143331 5143614 -212893544 - L1M4 LINE L1 -2741 3405 3106 * 577 321 33 23 chr3 5143607 5144000 -212893158 - L1MCc LINE L1 -4887 1536 1140 216 326 119 26 chr3 5145162 5145355 -212891803 - MIR SINE MIR 0 262 52 1685 137 5 2 chr3 5145363 5145630 -212891528 + L1PA15 LINE L1 5654 5929 -237 1605 118 4 4 chr3 5145680 5145917 -212891241 + L1PA15 LINE L1 5926 6162 -3 42247 53 4 1 chr3 5146384 5152501 -212884657 - L1PA4 LINE L1 0 6155 19 1970 154 81 8 chr3 5152925 5153294 -212883864 + MSTD LTR MaLR 1 396 0 1503 176 36 39 chr3 5153862 5154169 -212882989 - AluJo SINE Alu 0 312 7 22 56 0 0 chr3 5154318 5154354 -212882804 + AT_rich Low_complexity Low_complexity 1 36 0 1107 30 0 0 chr3 5154420 5154554 -212882604 + L1PA4 LINE L1 6018 6151 -4 539 151 41 41 chr3 5154605 5154751 -212882407 - Charlie5 DNA MER1_type -11 2601 2456 180 0 0 0 chr3 5156488 5156508 -212880650 + (TG)n Simple_repeat Simple_repeat 2 21 0 3727 245 51 58 chr3 5156814 5157542 -212879616 + L1ME1 LINE L1 3658 4390 -1776 1245 186 113 15 chr3 5157542 5157839 -212879319 - AluJb SINE Alu 0 312 1 3727 245 51 58 chr3 5157839 5159402 -212877756 + L1ME1 LINE L1 4390 5920 -246 23150 32 7 0 chr3 5159699 5162910 -212874248 + L1P1 LINE L1 2544 5772 -383 207 0 0 0 chr3 5163472 5163495 -212873663 + (CA)n Simple_repeat Simple_repeat 1 23 0 220 304 0 18 chr3 5163540 5163596 -212873562 + L2 LINE L2 3121 3175 -97 562 286 65 35 chr3 5164040 5164239 -212872919 + MIR SINE MIR 58 262 0 332 349 48 26 chr3 5165619 5165848 -212871310 - L2 LINE L2 -3 3310 3077 387 60 0 0 chr3 5166272 5166322 -212870836 + (TTCCC)n Simple_repeat Simple_repeat 1 50 0 27 0 0 0 chr3 5166442 5166469 -212870689 + AT_rich Low_complexity Low_complexity 1 27 0 947 286 34 67 chr3 5166483 5166664 -212870494 + HAL1b LINE L1 364 549 -799 1928 128 6 39 chr3 5166664 5166976 -212870182 + AluSx SINE Alu 1 302 -10 947 286 34 67 chr3 5166976 5167347 -212869811 + HAL1b LINE L1 549 898 -450 276 204 41 10 chr3 5167724 5167822 -212869336 + (TA)n Simple_repeat Simple_repeat 1 101 0 881 228 0 0 chr3 5167857 5168015 -212869143 + AluJb SINE Alu 137 294 -18 1271 165 36 14 chr3 5168030 5168363 -212868795 + MER88 LTR ERVL 43 464 0 515 344 29 16 chr3 5168461 5168705 -212868453 + MIR SINE MIR 6 252 -10 2204 100 7 0 chr3 5169281 5169581 -212867577 - AluY SINE Alu -9 302 1 280 313 12 18 chr3 5169680 5169846 -212867312 + (CATATA)n Simple_repeat Simple_repeat 3 167 0 525 296 109 41 chr3 5170045 5171340 -212865818 - L1M4 LINE L1 -1091 5055 3662 312 316 22 7 chr3 5171701 5171840 -212865318 - L1M4 LINE L1 -2838 3308 3168 2413 118 22 3 chr3 5172536 5172893 -212864265 - THE1B LTR MaLR 0 364 1 2740 156 2 26 chr3 5174400 5174868 -212862290 - MER41B LTR ERV1 0 635 179 1380 127 9 27 chr3 5174903 5174992 -212862166 - AluSq SINE Alu -96 217 128 189 0 0 0 chr3 5174992 5175013 -212862145 + (TA)n Simple_repeat Simple_repeat 1 21 0 1380 127 9 27 chr3 5175013 5175144 -212862014 - AluSq SINE Alu -185 128 1 1272 132 5 0 chr3 5175144 5175334 -212861824 - MER41B LTR ERV1 -444 191 1 363 274 212 0 chr3 5175915 5176061 -212861097 + MER5B DNA MER1_type 2 178 0 535 314 110 4 chr3 5176961 5177197 -212859961 - MIR SINE MIR 0 262 2 265 321 161 12 chr3 5177628 5177790 -212859368 - L2 LINE L2 -195 3077 2892 463 237 23 45 chr3 5177840 5178017 -212859141 + Charlie7 DNA MER1_type 2440 2612 0 204 273 131 10 chr3 5178903 5179002 -212858156 - MIR SINE MIR -5 257 147 2943 160 29 60 chr3 5179006 5179638 -212857520 - LTR9 LTR ERV1 0 612 1 231 320 29 10 chr3 5179684 5179787 -212857371 - MIR SINE MIR -155 107 3 287 265 24 0 chr3 5179844 5179927 -212857231 + (TTCA)n Simple_repeat Simple_repeat 1 85 0 26 0 0 0 chr3 5180522 5180548 -212856610 + AT_rich Low_complexity Low_complexity 1 26 0 272 403 93 5 chr3 5180982 5181198 -212855960 + L2 LINE L2 2551 2785 -529 395 333 62 25 chr3 5181245 5181488 -212855670 + L2 LINE L2 2888 3139 -174 918 277 93 34 chr3 5181546 5181867 -212855291 - LTR16C LTR ERVL -3 488 149 210 280 194 32 chr3 5181955 5182048 -212855110 + L2 LINE L2 3141 3248 -24 1715 179 122 24 chr3 5182247 5182672 -212854486 - MLT1C LTR MaLR 0 467 1 353 243 99 40 chr3 5184655 5184807 -212852351 - LTR37B LTR ERV1 -72 396 236 241 382 38 0 chr3 5186313 5186444 -212850714 - L3b LINE CR1 -121 1462 1327 280 98 49 0 chr3 5186881 5186942 -212850216 + GA-rich Low_complexity Low_complexity 1 64 0 2308 58 0 3 chr3 5187293 5187601 -212849557 - AluY SINE Alu -4 307 1 187 349 0 24 chr3 5188166 5188249 -212848909 + L2 LINE L2 813 893 -2421 348 165 0 28 chr3 5188311 5188420 -212848738 + (TAA)n Simple_repeat Simple_repeat 1 106 0 342 0 0 0 chr3 5188682 5188720 -212848438 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 396 0 0 0 chr3 5188719 5188763 -212848395 + (CA)n Simple_repeat Simple_repeat 2 45 0 202 93 23 23 chr3 5190064 5190107 -212847051 + (TA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr3 5190300 5190322 -212846836 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 5191802 5191830 -212845328 + AT_rich Low_complexity Low_complexity 1 28 0 235 280 85 17 chr3 5192078 5192196 -212844962 - MER117 DNA MER1_type -65 132 7 727 179 0 0 chr3 5193140 5193257 -212843901 + FLAM_C SINE Alu 1 117 -16 263 28 28 0 chr3 5193262 5193298 -212843860 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 806 71 8 0 chr3 5193518 5193645 -212843513 + (TTCC)n Simple_repeat Simple_repeat 1 128 0 25 31 0 0 chr3 5193675 5193707 -212843451 + AT_rich Low_complexity Low_complexity 1 32 0 338 261 112 25 chr3 5193924 5194085 -212843073 + L2 LINE L2 1909 2083 -1231 435 299 8 0 chr3 5194100 5194227 -212842931 + L2 LINE L2 2231 2358 -956 237 392 64 8 chr3 5194224 5194349 -212842809 - L2 LINE L2 -366 2948 2817 * 1097 294 88 44 chr3 5194373 5194999 -212842159 + L2 LINE L2 2369 3042 -271 289 286 162 0 chr3 5196182 5196287 -212840871 - MIR3 SINE MIR -2 206 85 326 311 57 31 chr3 5198187 5198380 -212838778 + L3 LINE CR1 1214 1411 -166 235 246 66 0 chr3 5198841 5198902 -212838256 - MIR SINE MIR -149 113 49 180 0 0 0 chr3 5199739 5199759 -212837399 + (A)n Simple_repeat Simple_repeat 1 20 0 28 71 0 0 chr3 5199784 5199840 -212837318 + AT_rich Low_complexity Low_complexity 1 56 0 231 247 33 73 chr3 5200348 5200498 -212836660 + MIR SINE MIR 117 260 -2 198 128 0 0 chr3 5202056 5202095 -212835063 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1565 192 4 4 chr3 5203980 5204107 -212833051 + AluSx SINE Alu 1 127 -185 279 0 0 0 chr3 5204107 5204138 -212833020 + (CA)n Simple_repeat Simple_repeat 2 32 0 1565 192 4 4 chr3 5204138 5204286 -212832872 + AluSx SINE Alu 126 276 -36 333 0 0 0 chr3 5204288 5204325 -212832833 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 587 94 10 0 chr3 5204324 5204420 -212832738 + (TA)n Simple_repeat Simple_repeat 1 97 0 482 358 6 6 chr3 5204493 5204672 -212832486 + L2 LINE L2 1405 1583 -1731 1735 290 128 43 chr3 5204787 5205810 -212831348 + L2 LINE L2 1867 2976 -338 2245 194 21 8 chr3 5205851 5206330 -212830828 - L1MC3 LINE L1 -1 7784 7300 393 293 98 6 chr3 5206336 5206510 -212830648 + L1M4c LINE L1 1704 1893 -4491 337 301 83 74 chr3 5206654 5206669 -212830489 + L1M4c LINE L1 2019 2032 -4531 1662 140 34 17 chr3 5206669 5206962 -212830196 + L1PA16 LINE L1 5866 6163 -3 337 301 83 74 chr3 5206962 5207258 -212829900 + L1M4c LINE L1 2032 2333 -4230 234 195 39 13 chr3 5207270 5207347 -212829811 + L1M4c LINE L1 2303 2381 -4001 3903 209 56 15 chr3 5207354 5208397 -212828761 - L1MC3 LINE L1 -746 5400 5161 * 4354 257 54 17 chr3 5208383 5210002 -212827156 + L1M4c LINE L1 2819 4497 -1885 805 228 56 39 chr3 5209996 5210407 -212826751 + L1M4c LINE L1 4900 5347 -1035 * 948 258 11 22 chr3 5210411 5210678 -212826480 - L1MCb LINE L1 -5781 264 1 4686 181 48 73 chr3 5210844 5212001 -212825157 + MER52A LTR ERV1 627 1755 0 5759 122 4 3 chr3 5213492 5214691 -212822467 + L1PA13 LINE L1 4967 6163 0 29 98 0 0 chr3 5216812 5216904 -212820254 + AT_rich Low_complexity Low_complexity 1 92 0 415 252 163 0 chr3 5217610 5217733 -212819425 + L2 LINE L2 3171 3313 0 24 0 0 0 chr3 5217857 5217881 -212819277 + AT_rich Low_complexity Low_complexity 1 24 0 201 363 70 19 chr3 5218316 5218473 -212818685 + MIR SINE MIR 39 203 -59 2873 227 45 18 chr3 5218682 5219651 -212817507 - L1M4 LINE L1 -2399 4245 3250 * 4271 238 59 41 chr3 5219638 5220256 -212816902 - L1M4 LINE L1 -3698 2946 2340 3371 162 24 7 chr3 5220256 5220848 -212816310 + LTR43 LTR ERV1 1 602 0 4271 238 59 41 chr3 5220848 5222758 -212814400 - L1M4 LINE L1 -4304 2340 307 2055 187 68 60 chr3 5222790 5224091 -212813067 - L1PA6 LINE L1 0 7592 6236 6208 83 108 19 chr3 5224096 5225160 -212811998 - MER11A LTR ERVK 0 1266 1 812 215 5 46 chr3 5225160 5225379 -212811779 - L1 LINE L1 -1348 4798 4589 5402 247 24 22 chr3 5225382 5227714 -212809444 - L1PA6 LINE L1 -3060 4524 2231 1890 91 0 4 chr3 5228102 5228356 -212808802 - AluY SINE Alu 0 311 59 273 304 49 33 chr3 5228725 5228909 -212808249 - L1PA6 LINE L1 -5267 2307 2121 * 862 316 53 53 chr3 5228880 5229431 -212807727 - L1PA6 LINE L1 -6166 1408 858 2195 91 0 7 chr3 5229477 5229790 -212807368 - AluSx SINE Alu 0 311 1 1007 234 57 4 chr3 5229859 5230107 -212807051 - L1M4 LINE L1 -6280 262 2 377 216 157 48 chr3 5230259 5230483 -212806675 - MLT1H1 LTR MaLR -286 309 22 224 266 76 0 chr3 5230503 5230582 -212806576 - MIR SINE MIR -61 201 117 222 37 0 0 chr3 5230626 5230653 -212806505 + (CTATT)n Simple_repeat Simple_repeat 5 31 0 389 359 12 12 chr3 5231179 5231346 -212805812 + MIR SINE MIR 8 174 -88 23 33 0 0 chr3 5231728 5231758 -212805400 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr3 5231923 5231964 -212805194 + AT_rich Low_complexity Low_complexity 1 41 0 434 284 115 6 chr3 5233920 5234103 -212803055 - MIR SINE MIR -58 204 2 297 128 0 0 chr3 5234118 5234165 -212802993 + (TG)n Simple_repeat Simple_repeat 2 48 0 1243 282 104 32 chr3 5234385 5235002 -212802156 + MLT2F LTR ERVL 1 661 -2 21 0 0 0 chr3 5236308 5236329 -212800829 + AT_rich Low_complexity Low_complexity 1 21 0 310 229 72 12 chr3 5236375 5236458 -212800700 - L1MC4 LINE L1 -1339 6703 6616 236 369 92 14 chr3 5237588 5237729 -212799429 + MIR SINE MIR 41 192 -70 381 327 75 39 chr3 5237776 5238030 -212799128 - L2 LINE L2 -198 3074 2812 1404 167 38 38 chr3 5238248 5238511 -212798647 + MER7A DNA MER2_type 1 261 -85 1101 214 0 0 chr3 5238622 5238828 -212798330 - MER2 DNA MER2_type -139 206 1 467 250 0 0 chr3 5238828 5238915 -212798243 + MER7A DNA MER2_type 260 346 0 2007 293 58 23 chr3 5238931 5240052 -212797106 - L1MEc LINE L1 -4073 2323 1164 765 279 68 19 chr3 5240096 5240361 -212796797 - L1MEc LINE L1 -6082 314 37 1969 263 86 18 chr3 5240369 5241008 -212796150 + L1ME1 LINE L1 2237 2962 -3184 1431 187 50 25 chr3 5241008 5241291 -212795867 + AluJo SINE Alu 1 290 -22 1969 263 86 18 chr3 5241291 5241592 -212795566 + L1ME1 LINE L1 2962 3241 -2905 2759 240 54 40 chr3 5241614 5243373 -212793785 + L1ME1 LINE L1 4377 6159 -7 36 0 0 0 chr3 5243435 5243471 -212793687 + AT_rich Low_complexity Low_complexity 1 36 0 394 336 17 0 chr3 5243590 5243709 -212793449 - L2 LINE L2 0 3313 3193 1548 201 189 41 chr3 5243714 5244275 -212792883 - LTR48B LTR ERV1 0 644 1 391 381 11 16 chr3 5244365 5244554 -212792604 - L2 LINE L2 -251 3062 2875 285 294 0 24 chr3 5244924 5245050 -212792108 + GA-rich Low_complexity Low_complexity 4 126 0 206 232 0 0 chr3 5245509 5245565 -212791593 + T-rich Low_complexity Low_complexity 1 56 0 201 39 0 0 chr3 5245565 5245591 -212791567 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7684 17 0 0 chr3 5245592 5247219 -212789939 - L1PA3 LINE L1 -14 6141 4514 266 322 138 0 chr3 5247689 5247841 -212789317 + MIR SINE MIR 87 259 -3 405 273 11 0 chr3 5250645 5250733 -212786425 + L2 LINE L2 3195 3283 -30 267 376 30 15 chr3 5250856 5250989 -212786169 + MIR3 SINE MIR 33 167 -41 2624 109 5 11 chr3 5251516 5251893 -212785265 - THE1C LTR MaLR 0 375 1 1580 159 77 69 chr3 5252584 5252961 -212784197 - MLT1B LTR MaLR 0 390 11 25 0 0 0 chr3 5253198 5253223 -212783935 + AT_rich Low_complexity Low_complexity 1 25 0 2025 99 46 3 chr3 5253601 5253885 -212783273 - AluSx SINE Alu -16 296 1 30 0 0 0 chr3 5255507 5255537 -212781621 + AT_rich Low_complexity Low_complexity 1 30 0 257 177 131 98 chr3 5255997 5256099 -212781059 + MIR3 SINE MIR 56 166 -42 239 338 0 13 chr3 5256350 5256427 -212780731 - MIR SINE MIR -112 150 75 259 347 0 0 chr3 5256513 5256588 -212780570 - L3 LINE CR1 -196 1381 1307 482 347 73 32 chr3 5257290 5257662 -212779496 + MLT1J2 LTR MaLR 50 436 -14 22 0 0 0 chr3 5258298 5258320 -212778838 + AT_rich Low_complexity Low_complexity 1 22 0 293 243 78 39 chr3 5258987 5259105 -212778053 + MIR SINE MIR 2 119 -90 237 335 48 48 chr3 5259192 5259359 -212777799 - L3 LINE CR1 -103 1474 1308 190 212 30 0 chr3 5259362 5259395 -212777763 + MER5A DNA MER1_type 2 35 -154 351 157 34 0 chr3 5259509 5259598 -212777560 + CT-rich Low_complexity Low_complexity 5 96 0 351 176 11 77 chr3 5259603 5259694 -212777464 - MLT1E3 LTR MaLR -391 233 149 777 193 183 63 chr3 5259706 5259991 -212777167 - MLT1A1 LTR MaLR -46 319 1 3488 204 8 8 chr3 5259995 5260619 -212776539 - MLT1A1-int LTR MaLR -4 1731 1108 496 192 10 29 chr3 5260637 5260741 -212776417 - MLT1E3 LTR MaLR -472 152 51 606 234 22 0 chr3 5260751 5260888 -212776270 - MLT2F LTR ERVL -523 140 1 477 221 32 0 chr3 5260888 5260983 -212776175 + MER5A DNA MER1_type 92 189 0 769 236 113 5 chr3 5261527 5261646 -212775512 + MER46A DNA MER2_type 1 106 -2625 1961 107 95 76 chr3 5261646 5262066 -212775092 - MSTA LTR MaLR 0 428 1 769 236 113 5 chr3 5262066 5262158 -212775000 + MER46A DNA MER2_type 106 235 -1 514 276 43 19 chr3 5262771 5262981 -212774177 - MER58C DNA MER1_type 0 215 1 342 115 0 186 chr3 5264385 5264422 -212772736 - MER5C DNA MER1_type 0 324 282 1215 269 59 45 chr3 5264422 5264934 -212772224 + LTR40a LTR ERVL 1 519 0 1784 171 13 3 chr3 5264936 5265235 -212771923 + AluJb SINE Alu 1 302 -10 342 115 0 186 chr3 5265235 5265307 -212771851 - MER5C DNA MER1_type -43 281 233 1540 270 57 43 chr3 5265310 5265891 -212771267 + MLT1E LTR MaLR 1 589 -4 194 375 100 17 chr3 5265927 5266047 -212771111 + L2 LINE L2 3143 3272 0 1746 122 7 0 chr3 5266284 5266563 -212770595 - MER6A DNA MER2_type 0 605 325 331 177 32 0 chr3 5266613 5266675 -212770483 + MSTB1 LTR MaLR 1 64 -368 * 1844 154 36 3 chr3 5266668 5266974 -212770184 - MER6A DNA MER2_type -289 316 1 200 333 86 0 chr3 5267165 5267258 -212769900 + MIR3 SINE MIR 77 177 -31 1874 187 107 3 chr3 5267409 5267800 -212769358 + MSTB1 LTR MaLR 1 432 0 39 50 0 0 chr3 5267954 5268014 -212769144 + AT_rich Low_complexity Low_complexity 1 60 0 359 240 39 0 chr3 5273517 5273621 -212763537 + MER105 DNA DNA 42 149 -55 4526 64 33 4 chr3 5274589 5275589 -212761569 - MER11A LTR ERVK 0 1266 1 706 312 44 30 chr3 5276021 5276319 -212760839 - LTR16A LTR ERVL -79 371 70 612 331 57 75 chr3 5277200 5278286 -212758872 - L2 LINE L2 -9 3304 2228 317 109 0 0 chr3 5278536 5278582 -212758576 - MADE1 DNA Mariner -34 46 1 207 325 74 43 chr3 5278910 5279073 -212758085 - MIR SINE MIR -89 173 6 23 33 0 0 chr3 5280808 5280838 -212756320 + AT_rich Low_complexity Low_complexity 1 30 0 385 260 188 26 chr3 5280839 5280993 -212756165 - MIR SINE MIR -51 211 33 456 322 44 6 chr3 5282296 5282476 -212754682 + MIR SINE MIR 20 206 -56 324 286 211 6 chr3 5283813 5283974 -212753184 - L2 LINE L2 -24 3289 3096 609 214 17 79 chr3 5284965 5285143 -212752015 + L1MA9 LINE L1 6122 6288 -3 922 67 0 0 chr3 5285143 5285263 -212751895 - L1PB3 LINE L1 -9 6145 6026 21 0 0 0 chr3 5285265 5285286 -212751872 + AT_rich Low_complexity Low_complexity 1 21 0 2211 87 17 0 chr3 5285302 5285589 -212751569 + AluSc SINE Alu 3 294 -15 2398 44 3 0 chr3 5285726 5286020 -212751138 + AluY SINE Alu 1 295 -16 1629 158 14 14 chr3 5286104 5286389 -212750769 + AluJo SINE Alu 1 285 -27 251 123 31 15 chr3 5286389 5286454 -212750704 + (TA)n Simple_repeat Simple_repeat 1 66 0 5502 36 3 1 chr3 5286732 5287394 -212749764 - L1PA5 LINE L1 -1 6153 5491 328 196 36 36 chr3 5287498 5287666 -212749492 + (TTGTG)n Simple_repeat Simple_repeat 5 172 0 2218 194 21 8 chr3 5287905 5288384 -212748774 - L1MC3 LINE L1 -1 7784 7300 382 264 62 92 chr3 5288390 5288685 -212748473 + L1M4c LINE L1 1704 2140 -4423 1624 143 34 20 chr3 5288724 5289018 -212748140 + L1PA16 LINE L1 5866 6163 -3 2068 236 50 37 chr3 5289273 5290175 -212746983 - L1M4c LINE L1 -2481 3901 2988 932 223 32 77 chr3 5290162 5290645 -212746513 - L1M4c LINE L1 -3698 2684 2223 * 21 36 0 0 chr3 5292048 5292076 -212745082 + AT_rich Low_complexity Low_complexity 1 28 0 221 200 10 30 chr3 5292702 5292802 -212744356 + A-rich Low_complexity Low_complexity 3 100 0 2214 74 0 0 chr3 5294301 5294618 -212742540 - AluY SINE Alu 0 317 1 2253 83 27 10 chr3 5294713 5295013 -212742145 + AluSx SINE Alu 1 305 -7 4127 150 21 3 chr3 5295471 5296144 -212741014 + MER6 DNA MER2_type 181 865 0 981 200 69 12 chr3 5296149 5296275 -212740883 - L1ME LINE L1 -349 5817 5700 2115 128 0 0 chr3 5296275 5296573 -212740585 - AluSq SINE Alu -15 298 1 981 200 69 12 chr3 5296573 5296691 -212740467 - L1ME LINE L1 -466 5700 5559 * 2064 147 0 3 chr3 5296675 5296989 -212740169 + L1P LINE L1 5 317 -5829 655 241 6 6 chr3 5298426 5298592 -212738566 - L1 LINE L1 -1222 4924 4759 1441 130 43 9 chr3 5298594 5298824 -212738334 - MSTA LTR MaLR 0 428 191 1978 121 7 7 chr3 5298824 5299122 -212738036 - AluSq SINE Alu -15 298 1 236 174 65 0 chr3 5299781 5299827 -212737331 + MER41D LTR ERV1 509 557 0 2380 118 25 3 chr3 5301101 5301457 -212735701 + THE1B LTR MaLR 1 364 0 266 322 138 0 chr3 5301990 5302142 -212735016 - MIR SINE MIR -3 259 87 3399 69 0 4 chr3 5302593 5303045 -212734113 + L1P LINE L1 4497 4946 -1200 535 152 11 22 chr3 5303147 5303239 -212733919 - MER77 LTR ERV1 -148 457 367 405 0 0 0 chr3 5303271 5303316 -212733842 + (TG)n Simple_repeat Simple_repeat 2 46 0 434 154 154 0 chr3 5303327 5303437 -212733721 - L1MC4a LINE L1 -1382 6426 6300 467 227 156 14 chr3 5303491 5303677 -212733481 - L1MC4a LINE L1 -1486 6322 6086 1883 145 16 3 chr3 5303678 5303982 -212733176 + AluJb SINE Alu 1 308 -4 338 206 0 0 chr3 5303985 5304053 -212733105 + L1MC4 LINE L1 6636 6703 -1339 655 225 85 84 chr3 5304236 5304627 -212732531 - MSTB2 LTR MaLR -13 444 1 219 336 82 55 chr3 5304640 5304750 -212732408 - MIR3 SINE MIR -93 115 3 6776 67 8 5 chr3 5304903 5306566 -212730592 - L1PA7 LINE L1 -16 6138 4475 23 54 0 0 chr3 5307875 5307912 -212729246 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 5308155 5308179 -212728979 + AT_rich Low_complexity Low_complexity 1 24 0 1944 134 3 3 chr3 5308184 5308510 -212728648 + AluSx SINE Alu 3 328 0 261 277 69 54 chr3 5308910 5309040 -212728118 + L2 LINE L2 3140 3271 -1 264 242 200 11 chr3 5309050 5309145 -212728013 - L2 LINE L2 -1 3312 3200 271 234 404 0 chr3 5309346 5309440 -212727718 - L2 LINE L2 0 3272 3141 1662 220 77 46 chr3 5309446 5309928 -212727230 - MLT1D LTR MaLR -6 499 3 1006 289 86 42 chr3 5311452 5311978 -212725180 + MLT1H LTR MaLR 1 549 0 21 36 0 0 chr3 5312028 5312056 -212725102 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 5312164 5312187 -212724971 + AT_rich Low_complexity Low_complexity 1 23 0 351 0 0 0 chr3 5312459 5312498 -212724660 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 274 27 0 chr3 5312669 5312742 -212724416 + MIR SINE MIR 182 256 -6 1728 176 3 0 chr3 5313212 5313501 -212723657 + AluJo SINE Alu 1 290 -22 634 209 130 6 chr3 5313511 5313688 -212723470 + MER20 DNA MER1_type 1 199 -20 434 341 74 9 chr3 5314139 5314356 -212722802 - MIR SINE MIR -14 248 18 2286 113 0 6 chr3 5314855 5315166 -212721992 - AluSx SINE Alu -2 310 2 206 310 43 70 chr3 5315914 5316101 -212721057 + L2 LINE L2 2726 2907 -407 300 254 24 79 chr3 5316385 5316511 -212720647 + MIR SINE MIR 45 163 -99 560 284 126 48 chr3 5316621 5316892 -212720266 + LTR16C LTR ERVL 200 491 0 1976 134 16 3 chr3 5316912 5317219 -212719939 + AluSx SINE Alu 1 311 -1 521 237 44 7 chr3 5317345 5317480 -212719678 + MIR SINE MIR 12 151 -111 217 221 118 0 chr3 5317874 5317942 -212719216 - MIR SINE MIR -140 122 47 207 0 0 0 chr3 5317946 5317969 -212719189 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2975 83 0 2 chr3 5318055 5318452 -212718706 - L1PA8 LINE L1 0 6172 5777 291 294 0 73 chr3 5318753 5318862 -212718296 + MIR SINE MIR 45 145 -117 410 255 32 138 chr3 5319440 5319687 -212717471 + MER102a DNA MER1_type 92 312 -18 580 291 20 35 chr3 5319891 5320090 -212717068 - MIR SINE MIR -57 205 10 375 277 44 25 chr3 5320282 5320441 -212716717 + MER103 DNA DNA 5 166 0 198 307 92 43 chr3 5320491 5320652 -212716506 + MIR SINE MIR 2 169 -68 2114 105 3 3 chr3 5320855 5321141 -212716017 - AluSx SINE Alu -26 286 1 238 164 16 16 chr3 5321213 5321274 -212715884 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 304 0 87 0 chr3 5322135 5322181 -212714977 + A-rich Low_complexity Low_complexity 2 51 0 184 379 11 0 chr3 5322683 5322770 -212714388 - MIR SINE MIR -155 107 20 685 326 25 8 chr3 5323261 5323497 -212713661 + MIR SINE MIR 22 261 -1 307 0 0 0 chr3 5324159 5324193 -212712965 + (TTTA)n Simple_repeat Simple_repeat 2 128 0 635 186 0 0 chr3 5324193 5324295 -212712863 - AluJo SINE Alu -1 317 183 644 209 0 0 chr3 5324294 5324409 -212712749 - AluJo SINE Alu -187 115 1 282 287 30 20 chr3 5326730 5326831 -212710327 + MLT1H LTR MaLR 1 102 -447 25 0 0 0 chr3 5326957 5326982 -212710176 + AT_rich Low_complexity Low_complexity 1 25 0 236 222 0 16 chr3 5327264 5327327 -212709831 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 334 377 117 20 chr3 5327662 5328063 -212709095 - L2 LINE L2 -339 2975 2536 199 346 71 50 chr3 5328056 5328238 -212708920 + L2 LINE L2 2628 2813 -501 * 283 298 58 8 chr3 5328408 5328529 -212708629 - MER94 DNA DNA 0 134 8 292 380 29 37 chr3 5328576 5328821 -212708337 + MLT1K LTR MaLR 40 282 -306 1246 314 38 7 chr3 5328884 5329305 -212707853 + MER74C LTR ERVL 10 443 -17 2023 141 3 6 chr3 5329450 5329762 -212707396 - AluSq SINE Alu 0 313 3 489 325 5 26 chr3 5330020 5330214 -212706944 + MIR3 SINE MIR 19 208 0 288 249 44 88 chr3 5330820 5331025 -212706133 + MER46C DNA MER2_type 1 196 -142 249 209 0 95 chr3 5331060 5331165 -212705993 - L1MC4 LINE L1 -1339 6703 6609 1057 220 5 5 chr3 5331249 5331449 -212705709 + MER58A DNA MER1_type 1 200 -24 332 321 9 0 chr3 5333483 5333595 -212703563 - MIR3 SINE MIR -1 207 95 421 300 15 0 chr3 5333887 5334017 -212703141 - MER110 LTR ERV1 0 491 360 2566 149 9 41 chr3 5334031 5334474 -212702684 + MER57B LTR ERV1 1 429 -5 946 251 127 0 chr3 5334481 5334748 -212702410 - MER110 LTR ERV1 -145 346 46 504 267 72 59 chr3 5334802 5335023 -212702135 - MER58A DNA MER1_type 0 224 1 226 210 32 0 chr3 5335181 5335243 -212701915 + (TA)n Simple_repeat Simple_repeat 1 64 0 1304 280 9 69 chr3 5335574 5336099 -212701059 + L3 LINE CR1 795 1288 -289 414 321 81 43 chr3 5336664 5336873 -212700285 + MIR SINE MIR 46 262 0 735 288 113 14 chr3 5337983 5338501 -212698657 - MLT2E LTR ERVL -2 626 25 1597 169 4 22 chr3 5338766 5339044 -212698114 + AluJo SINE Alu 2 274 -38 300 27 0 0 chr3 5340636 5340676 -212696482 + (TG)n Simple_repeat Simple_repeat 1 77 0 300 27 0 0 chr3 5340676 5340713 -212696445 + (TG)n Simple_repeat Simple_repeat 2 38 0 621 207 201 73 chr3 5340930 5341205 -212695953 + MER63D DNA MER1_type 47 376 -685 212 0 0 35 chr3 5341205 5341234 -212695924 + (TA)n Simple_repeat Simple_repeat 1 28 0 621 207 201 73 chr3 5341234 5341301 -212695857 + MER63D DNA MER1_type 376 433 -628 1647 198 68 3 chr3 5341320 5341688 -212695470 + MER63D DNA MER1_type 666 1057 -4 22 35 0 0 chr3 5341792 5341821 -212695337 + AT_rich Low_complexity Low_complexity 1 29 0 194 258 91 45 chr3 5341842 5341908 -212695250 - MER5B DNA MER1_type -2 176 108 1073 242 81 36 chr3 5341913 5342114 -212695044 + L1ME3A LINE L1 5734 5924 -246 216 0 0 0 chr3 5342114 5342138 -212695020 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 5342138 5342354 -212694804 + L1ME3A LINE L1 5924 6170 0 2150 115 0 0 chr3 5342364 5342643 -212694515 + AluSg SINE Alu 1 279 -31 444 237 21 0 chr3 5342687 5342784 -212694374 + MER5B DNA MER1_type 77 175 -3 24 77 0 0 chr3 5342827 5342879 -212694279 + AT_rich Low_complexity Low_complexity 1 52 0 1234 160 20 116 chr3 5342918 5343212 -212693946 + Tigger7 DNA MER2_type 2 267 -2220 412 264 0 0 chr3 5343210 5343297 -212693861 + Tigger7 DNA MER2_type 2489 2575 -12 * 296 250 181 0 chr3 5343430 5343502 -212693656 + FLAM_A SINE Alu 33 117 -16 198 167 0 0 chr3 5343512 5343548 -212693610 + (TG)n Simple_repeat Simple_repeat 1 36 0 322 218 33 0 chr3 5343548 5343639 -212693519 + L1MCa LINE L1 1996 6983 -1339 281 188 0 0 chr3 5343669 5343733 -212693425 - L1MC4 LINE L1 -1339 6703 6640 813 217 0 30 chr3 5343739 5343905 -212693253 + FRAM SINE Alu 1 154 -22 6715 105 13 35 chr3 5343932 5344966 -212692192 + L1MA2 LINE L1 5137 6192 -112 1946 127 4 0 chr3 5344966 5345233 -212691925 + AluSx SINE Alu 1 268 -44 392 36 0 18 chr3 5345235 5345290 -212691868 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6715 105 13 35 chr3 5345290 5345446 -212691712 + L1MA2 LINE L1 6193 6304 0 461 176 22 22 chr3 5345450 5345467 -212691691 + GA-rich Low_complexity Low_complexity 2 18 -119 1682 170 26 13 chr3 5345467 5345773 -212691385 + AluJo SINE Alu 1 310 -2 461 176 22 22 chr3 5345773 5345891 -212691267 + GA-rich Low_complexity Low_complexity 17 137 0 23 0 0 0 chr3 5346980 5347003 -212690155 + AT_rich Low_complexity Low_complexity 1 23 0 825 330 41 39 chr3 5347151 5347690 -212689468 - L2 LINE L2 -2 3311 2772 2350 96 3 0 chr3 5347740 5348052 -212689106 + AluSp SINE Alu 1 313 0 238 111 0 0 chr3 5348662 5348698 -212688460 - MER5C DNA MER1_type 0 324 289 1271 275 59 45 chr3 5348699 5349211 -212687947 + LTR40a LTR ERVL 1 519 0 1770 134 17 7 chr3 5349213 5349505 -212687653 + AluY SINE Alu 1 295 -16 1700 170 48 0 chr3 5349589 5349715 -212687443 + AluSg SINE Alu 1 120 -190 405 39 0 0 chr3 5349715 5349766 -212687392 + (CA)n Simple_repeat Simple_repeat 2 52 0 1700 170 48 0 chr3 5349766 5349933 -212687225 + AluSg SINE Alu 120 308 -2 533 278 53 74 chr3 5350193 5350477 -212686681 + L2 LINE L2 2925 3202 -111 401 214 81 106 chr3 5350777 5351212 -212685946 + L1MC5 LINE L1 7518 7941 -20 886 242 57 0 chr3 5351298 5351509 -212685649 - MSTD LTR MaLR -11 385 163 3046 259 42 31 chr3 5351511 5352446 -212684712 - MSTD-int LTR MaLR -789 946 2 1817 178 30 35 chr3 5352448 5352846 -212684312 - MSTD LTR MaLR 0 396 1 254 278 0 0 chr3 5352847 5352901 -212684257 + L2 LINE L2 3242 3295 -18 21 0 0 0 chr3 5355372 5355393 -212681765 + AT_rich Low_complexity Low_complexity 1 21 0 493 275 38 26 chr3 5357571 5357761 -212679397 + MIR3 SINE MIR 6 208 -54 225 0 0 0 chr3 5358547 5358572 -212678586 + (CA)n Simple_repeat Simple_repeat 2 26 0 2062 112 0 7 chr3 5360258 5360545 -212676613 - AluSp SINE Alu 0 313 29 324 0 0 0 chr3 5361408 5361444 -212675714 + (TG)n Simple_repeat Simple_repeat 2 37 0 346 226 11 117 chr3 5361484 5361638 -212675520 - LTR48 LTR ERV1 -30 747 521 1469 149 54 144 chr3 5361645 5362109 -212675049 - LTR49 LTR ERV1 -170 425 4 21 0 0 0 chr3 5362203 5362224 -212674934 + AT_rich Low_complexity Low_complexity 1 21 0 334 313 47 0 chr3 5363240 5363368 -212673790 - MIR3 SINE MIR -5 203 70 180 225 42 42 chr3 5363358 5363429 -212673729 + L2 LINE L2 630 700 -2614 * 500 354 111 24 chr3 5363821 5364468 -212672690 - L2 LINE L2 -11 3302 2516 1536 201 3 11 chr3 5365026 5365310 -212671848 + AluJo SINE Alu 1 282 -30 267 325 67 17 chr3 5367836 5367956 -212669202 - MIR SINE MIR -108 154 29 2045 247 59 22 chr3 5368059 5368784 -212668374 + L1MB7 LINE L1 5239 5989 -195 238 150 0 0 chr3 5368879 5368919 -212668239 + L1MB7 LINE L1 6132 6171 -13 996 237 10 5 chr3 5369075 5369282 -212667876 - MER58A DNA MER1_type 0 224 17 297 164 0 36 chr3 5369358 5369413 -212667745 - MIR SINE MIR -209 53 1 21 36 0 0 chr3 5370531 5370559 -212666599 + AT_rich Low_complexity Low_complexity 1 28 0 963 144 33 93 chr3 5372546 5372761 -212664397 + MER67D LTR ERV1 1 202 -312 423 0 0 0 chr3 5372764 5372811 -212664347 + (TG)n Simple_repeat Simple_repeat 2 48 0 2331 123 3 6 chr3 5372828 5373187 -212663971 - L1PB1 LINE L1 0 6151 5794 180 0 0 0 chr3 5373187 5373207 -212663951 + (TA)n Simple_repeat Simple_repeat 1 20 0 281 98 49 0 chr3 5373207 5373248 -212663910 + L1P5 LINE L1 5684 5726 -425 734 113 0 0 chr3 5373253 5373368 -212663790 + L1P5 LINE L1 5675 5789 -362 2770 176 3 4 chr3 5373379 5374246 -212662912 - L1PB1 LINE L1 -479 5672 4806 412 222 134 8 chr3 5374248 5374450 -212662708 + MER67D LTR ERV1 233 514 0 2015 197 15 5 chr3 5375559 5375949 -212661209 + MSTD LTR MaLR 3 396 0 267 31 0 0 chr3 5376070 5376102 -212661056 + (TC)n Simple_repeat Simple_repeat 2 33 0 209 194 0 16 chr3 5376859 5376921 -212660237 + GA-rich Low_complexity Low_complexity 2 62 0 22 35 0 0 chr3 5377012 5377041 -212660117 + AT_rich Low_complexity Low_complexity 1 29 0 2925 195 40 15 chr3 5377149 5377830 -212659328 - L1MC2 LINE L1 -11 6333 5636 393 290 96 28 chr3 5378665 5379061 -212658097 - L1ME4a LINE L1 -70 6051 5629 29 28 0 0 chr3 5381719 5381755 -212655403 + AT_rich Low_complexity Low_complexity 1 36 0 5345 133 18 10 chr3 5381975 5383232 -212653926 + L1PB3 LINE L1 4887 6154 0 314 147 44 0 chr3 5383239 5383307 -212653851 - MER58 DNA MER1_type -62 2358 2288 2288 236 75 38 chr3 5383433 5384118 -212653040 + MER21B LTR ERV1 100 809 -54 1670 238 106 14 chr3 5384215 5384727 -212652431 - MLT1F1 LTR MaLR 0 567 9 972 278 126 68 chr3 5385414 5386479 -212650679 + L1MC4a LINE L1 5671 6797 -1011 600 228 11 97 chr3 5386513 5386843 -212650315 + L1ME4a LINE L1 5165 5464 -702 332 328 16 0 chr3 5386947 5387075 -212650083 - L1MC4 LINE L1 -606 7436 7307 642 186 57 52 chr3 5387075 5387269 -212649889 + MER63 DNA MER1_type 865 1059 -1 321 221 72 171 chr3 5387279 5387520 -212649638 + L1M4 LINE L1 2464 2632 -3514 1917 125 3 14 chr3 5387520 5387816 -212649342 - AluSx SINE Alu -17 295 3 321 221 72 171 chr3 5387816 5388071 -212649087 + L1M4 LINE L1 2632 2911 -3235 289 324 101 21 chr3 5388384 5388860 -212648298 + L1M4 LINE L1 3221 3734 -2412 1826 149 17 3 chr3 5389285 5389586 -212647572 + AluJb SINE Alu 1 305 -7 372 210 0 0 chr3 5389586 5389667 -212647491 + (TA)n Simple_repeat Simple_repeat 1 81 0 626 251 79 100 chr3 5389826 5390217 -212646941 - MSTD LTR MaLR -13 383 1 247 321 83 46 chr3 5390230 5390339 -212646819 - MIR3 SINE MIR -93 115 3 482 46 15 0 chr3 5390458 5390523 -212646635 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 222 37 0 0 chr3 5390525 5390552 -212646606 + (TG)n Simple_repeat Simple_repeat 2 28 0 408 321 93 12 chr3 5390640 5390886 -212646272 + L1ME4a LINE L1 5599 5864 -257 330 143 0 14 chr3 5390925 5390995 -212646163 + L1MB7 LINE L1 6111 6179 -5 1632 161 14 14 chr3 5391331 5391616 -212645542 + AluJo SINE Alu 1 285 -27 233 113 28 28 chr3 5391616 5391681 -212645477 + (TA)n Simple_repeat Simple_repeat 1 65 0 41645 61 2 0 chr3 5391959 5398093 -212639065 - L1PA5 LINE L1 -1 6153 11 1819 168 0 19 chr3 5398843 5399158 -212638000 - AluJb SINE Alu -3 309 1 339 344 46 0 chr3 5399175 5399326 -212637832 + MIR SINE MIR 102 259 -3 2995 214 19 16 chr3 5400358 5400557 -212636601 - L1 LINE L1 -914 5232 5035 207 0 0 0 chr3 5400557 5400580 -212636578 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2995 214 19 16 chr3 5400580 5401123 -212636035 - L1 LINE L1 -1111 5035 4488 991 296 90 35 chr3 5402310 5402743 -212634415 + LTR16B LTR ERVL 8 464 0 291 28 0 0 chr3 5402759 5402795 -212634363 + (TG)n Simple_repeat Simple_repeat 2 37 0 500 186 0 16 chr3 5402808 5402937 -212634221 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 205 300 10 40 chr3 5404315 5404415 -212632743 + L3b LINE CR1 1315 1411 -172 319 252 31 126 chr3 5404698 5404829 -212632329 + MER5B DNA MER1_type 19 134 -44 1829 122 8 0 chr3 5404829 5405083 -212632075 - AluSx SINE Alu -21 291 36 319 252 31 126 chr3 5405083 5405110 -212632048 + MER5B DNA MER1_type 134 162 -16 444 96 0 60 chr3 5405185 5405268 -212631890 + L1PA13 LINE L1 6075 6152 -11 21 0 0 0 chr3 5407362 5407383 -212629775 + AT_rich Low_complexity Low_complexity 1 21 0 2090 128 0 0 chr3 5407707 5408003 -212629155 - AluSx SINE Alu -15 297 2 183 283 0 19 chr3 5408013 5408066 -212629092 - L2 LINE L2 -4 3268 3217 1374 188 68 4 chr3 5408268 5408565 -212628593 + AluJo SINE Alu 2 315 0 941 292 131 43 chr3 5409015 5409164 -212627994 - HAL1 LINE L1 -909 1598 1463 1392 210 62 25 chr3 5409164 5409521 -212627637 - MLT1A2 LTR MaLR 0 374 5 941 292 131 43 chr3 5409521 5410252 -212626906 - HAL1 LINE L1 -1044 1463 641 2285 122 0 0 chr3 5410282 5410594 -212626564 + AluSx SINE Alu 1 312 0 657 287 0 53 chr3 5411578 5411825 -212625333 + MIR SINE MIR 15 248 -14 21 0 0 0 chr3 5411842 5411863 -212625295 + AT_rich Low_complexity Low_complexity 1 21 0 312 334 93 64 chr3 5413308 5413652 -212623506 - L2 LINE L2 0 3272 2919 819 208 26 26 chr3 5413741 5413933 -212623225 + MER3 DNA MER1_type 1 192 -17 380 378 11 6 chr3 5413991 5414171 -212622987 - L2 LINE L2 -535 2779 2599 12019 55 1 0 chr3 5414220 5416522 -212620636 + L1PA5 LINE L1 3848 6153 -1 540 260 80 35 chr3 5416849 5417049 -212620109 + MLT1K LTR MaLR 376 584 -4 26 0 0 0 chr3 5417547 5417573 -212619585 + AT_rich Low_complexity Low_complexity 1 26 0 279 193 9 23 chr3 5417649 5417768 -212619390 + MIR SINE MIR 86 261 -1 349 318 88 7 chr3 5418845 5418993 -212618165 + MIR SINE MIR 87 246 -16 39 22 0 0 chr3 5419050 5419096 -212618062 + AT_rich Low_complexity Low_complexity 1 46 0 1989 140 0 13 chr3 5419097 5419411 -212617747 - AluSx SINE Alu 0 312 3 214 137 39 39 chr3 5419510 5419561 -212617597 + A-rich Low_complexity Low_complexity 2 52 0 2508 112 99 7 chr3 5419802 5420261 -212616897 - LTR12 LTR ERV1 0 714 1 3284 135 19 17 chr3 5421132 5421658 -212615500 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr3 5423947 5423970 -212613188 + AT_rich Low_complexity Low_complexity 1 23 0 1110 180 23 59 chr3 5424053 5424338 -212612820 - AluJb SINE Alu 0 340 65 291 269 0 65 chr3 5425101 5425194 -212611964 - MER5B DNA MER1_type -91 87 1 436 270 43 9 chr3 5425346 5425461 -212611697 + MIR SINE MIR 1 119 -143 273 298 12 36 chr3 5425454 5425538 -212611620 - MIR SINE MIR -84 124 43 * 196 337 24 24 chr3 5425611 5425694 -212611464 + MIR3 SINE MIR 93 175 -33 632 294 131 0 chr3 5425708 5425929 -212611229 - MIR SINE MIR -10 252 3 24 0 0 0 chr3 5426874 5426898 -212610260 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 5426921 5426944 -212610214 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 5426969 5426990 -212610168 + AT_rich Low_complexity Low_complexity 1 21 0 1544 91 70 17 chr3 5426990 5427231 -212609927 - L1PA13 LINE L1 -1 6162 5909 432 0 0 0 chr3 5429339 5429387 -212607771 + (CA)n Simple_repeat Simple_repeat 2 49 0 294 303 148 68 chr3 5429820 5429982 -212607176 - MER5A DNA MER1_type -1 188 14 733 228 35 6 chr3 5431114 5431285 -212605873 + MER5B DNA MER1_type 3 178 0 546 276 83 11 chr3 5431335 5431516 -212605642 - MIR SINE MIR -33 229 36 750 261 18 0 chr3 5433128 5433293 -212603865 + MER45A DNA AcHobo 1 168 -10 311 296 85 63 chr3 5434066 5434465 -212602693 + L1 LINE L1 3111 3518 -2628 3707 192 40 34 chr3 5434539 5435397 -212601761 - MER21B LTR ERV1 0 863 1 199 250 108 42 chr3 5436795 5436915 -212600243 - L2 LINE L2 -229 3043 2916 193 381 12 0 chr3 5437168 5437252 -212599906 - L2 LINE L2 0 3272 3188 30 27 0 0 chr3 5438618 5438655 -212598503 + AT_rich Low_complexity Low_complexity 1 37 0 2330 268 73 46 chr3 5439004 5439475 -212597683 - L1ME3 LINE L1 0 6162 5705 1796 155 0 20 chr3 5439475 5439772 -212597386 - AluSx SINE Alu -21 291 1 2330 268 73 46 chr3 5439772 5441444 -212595714 - L1ME3 LINE L1 -457 5705 3943 1246 202 102 60 chr3 5441444 5441874 -212595284 - LTR47A LTR ERVL 0 452 5 2330 268 73 46 chr3 5441874 5442155 -212595003 - L1ME3 LINE L1 -2219 3943 3671 25 31 0 0 chr3 5442189 5442221 -212594937 + AT_rich Low_complexity Low_complexity 1 32 0 366 264 45 10 chr3 5442247 5442384 -212594774 - L1ME3 LINE L1 -2480 3666 3524 2287 29 11 4 chr3 5442714 5443072 -212594086 + AluY SINE Alu 1 360 0 249 338 0 0 chr3 5444079 5444156 -212593002 - MIR3 SINE MIR -7 201 125 209 269 90 67 chr3 5444275 5444409 -212592749 - MIR SINE MIR 0 262 126 299 333 38 50 chr3 5445072 5445231 -212591927 + MIR3 SINE MIR 27 183 -25 281 378 66 42 chr3 5446632 5446873 -212590285 - L3b LINE CR1 -20 1563 1317 257 314 6 70 chr3 5447374 5447427 -212589731 - MIR SINE MIR -109 153 98 3190 158 10 46 chr3 5447427 5447819 -212589339 + MER6A DNA MER2_type 2 364 -501 1704 166 3 28 chr3 5447819 5448109 -212589049 - AluJo SINE Alu -29 283 1 3190 158 10 46 chr3 5448109 5448343 -212588815 + MER6A DNA MER2_type 364 605 0 257 314 6 70 chr3 5448343 5448445 -212588713 - MIR SINE MIR -164 98 8 252 267 12 23 chr3 5448497 5448583 -212588575 + MIR SINE MIR 178 262 0 1751 181 7 13 chr3 5448618 5448917 -212588241 + AluJb SINE Alu 3 299 -13 183 42 0 0 chr3 5448917 5448941 -212588217 + (GA)n Simple_repeat Simple_repeat 2 25 0 180 278 188 21 chr3 5449572 5449716 -212587442 + MIR SINE MIR 49 216 -46 241 326 34 11 chr3 5449894 5449983 -212587175 + L2 LINE L2 2992 3082 -190 283 357 45 9 chr3 5450405 5450517 -212586641 + MIR SINE MIR 32 147 -115 323 305 103 33 chr3 5450738 5450951 -212586207 + MIR SINE MIR 4 231 -31 366 139 0 0 chr3 5451975 5452047 -212585111 + (CA)n Simple_repeat Simple_repeat 1 72 0 377 377 34 17 chr3 5452285 5452521 -212584637 - MIR SINE MIR 0 262 23 271 360 51 22 chr3 5453165 5453343 -212583815 + MIR SINE MIR 2 184 -78 899 301 57 57 chr3 5453601 5454150 -212583008 - MLT1H LTR MaLR 0 549 1 621 287 18 0 chr3 5454273 5454437 -212582721 - LTR33 LTR ERVL -354 167 1 429 274 48 43 chr3 5454447 5454633 -212582525 + MIR SINE MIR 6 192 -70 198 103 0 0 chr3 5454635 5454664 -212582494 + (TA)n Simple_repeat Simple_repeat 2 30 0 387 248 59 20 chr3 5455491 5455644 -212581514 + MER103 DNA DNA 6 164 -2 397 310 48 7 chr3 5456736 5456881 -212580277 - MIR SINE MIR -46 216 66 271 217 11 11 chr3 5457463 5457555 -212579603 + (TA)n Simple_repeat Simple_repeat 2 93 0 1127 221 69 1 chr3 5457692 5458011 -212579147 - MLT1D LTR MaLR 0 505 128 309 270 11 11 chr3 5458165 5458254 -212578904 + MER117 DNA MER1_type 2 90 -107 2647 112 3 3 chr3 5458308 5458683 -212578475 + THE1C LTR MaLR 1 375 0 30 69 0 0 chr3 5458913 5458971 -212578187 + AT_rich Low_complexity Low_complexity 1 58 0 346 308 147 53 chr3 5458995 5459430 -212577728 - L2 LINE L2 -12 3301 2826 2350 159 32 34 chr3 5461423 5461927 -212575231 - L1MA8 LINE L1 -4 6287 5785 180 260 6 172 chr3 5462130 5462299 -212574859 - MIR3 SINE MIR -65 143 3 * 513 315 211 28 chr3 5462299 5462964 -212574194 + L2 LINE L2 2304 3104 -168 320 296 68 31 chr3 5463445 5463607 -212573551 - MER102b DNA MER1_type 0 341 174 25 0 0 0 chr3 5464227 5464252 -212572906 + AT_rich Low_complexity Low_complexity 1 25 0 2248 56 3 0 chr3 5464300 5464616 -212572542 + L1PA8 LINE L1 5863 6179 0 22 21 0 62 chr3 5464705 5464753 -212572405 + AT_rich Low_complexity Low_complexity 1 45 0 331 331 18 18 chr3 5464862 5465025 -212572133 - L2 LINE L2 -4 3309 3147 840 131 0 0 chr3 5465165 5465287 -212571871 - FRAM SINE Alu -20 156 35 2211 121 3 6 chr3 5465459 5465772 -212571386 + AluSx SINE Alu 1 312 0 423 0 0 0 chr3 5465772 5465819 -212571339 + (TA)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr3 5466819 5466847 -212570311 + AT_rich Low_complexity Low_complexity 1 28 0 1725 111 4 12 chr3 5466885 5467129 -212570029 - AluSx SINE Alu -70 242 1 193 210 40 0 chr3 5467569 5467669 -212569489 + (TAAA)n Simple_repeat Simple_repeat 4 107 0 22 0 0 0 chr3 5467827 5467849 -212569309 + AT_rich Low_complexity Low_complexity 1 22 0 1495 219 148 37 chr3 5468477 5468905 -212568253 + MLT2B1 LTR ERVL 1 485 -35 300 27 0 0 chr3 5468905 5468942 -212568216 + (CA)n Simple_repeat Simple_repeat 1 37 0 1495 219 148 37 chr3 5468942 5468974 -212568184 + MLT2B1 LTR ERVL 485 512 -8 2379 132 3 19 chr3 5469079 5469449 -212567709 + THE1B LTR MaLR 1 364 0 450 323 30 6 chr3 5472608 5472772 -212564386 + MER117 DNA MER1_type 30 197 0 216 350 82 0 chr3 5475162 5475259 -212561899 - MIR3 SINE MIR -48 160 56 406 289 87 0 chr3 5475752 5475856 -212561302 + L2 LINE L2 3158 3270 -2 189 277 21 0 chr3 5478167 5478214 -212558944 + L2 LINE L2 2925 2972 -342 273 339 68 41 chr3 5478279 5478500 -212558658 + L2 LINE L2 3085 3311 -2 387 293 60 31 chr3 5478962 5479181 -212557977 - MIR SINE MIR -17 245 20 316 259 99 15 chr3 5479686 5479817 -212557341 + MIR SINE MIR 106 247 -15 1749 205 30 86 chr3 5479825 5480348 -212556810 + MLT1D LTR MaLR 1 618 -8 23 0 0 0 chr3 5481653 5481676 -212555482 + AT_rich Low_complexity Low_complexity 1 23 0 41926 34 25 2 chr3 5482014 5488025 -212549133 - L1PA2 LINE L1 0 6155 1 340 291 122 35 chr3 5489325 5489555 -212547603 - MIR SINE MIR -12 250 1 328 255 39 39 chr3 5490747 5490849 -212546309 + L1MC4 LINE L1 6602 6703 -1339 322 316 0 50 chr3 5490820 5490959 -212546199 - L1MC4 LINE L1 -1340 6702 6571 * 676 152 29 14 chr3 5491348 5491486 -212545672 - L1MB1 LINE L1 -6 6162 6023 2158 181 17 67 chr3 5491558 5492034 -212545124 + MER66A LTR ERV1 27 478 0 22 0 0 0 chr3 5493462 5493484 -212543674 + AT_rich Low_complexity Low_complexity 1 22 0 636 295 18 5 chr3 5494777 5494994 -212542164 + MER58A DNA MER1_type 2 221 -3 348 239 182 115 chr3 5495945 5495999 -212541159 - MER58A DNA MER1_type -2197 223 174 1131 124 31 26 chr3 5495999 5496193 -212540965 - L1PA16 LINE L1 -10 6156 5962 348 239 182 115 chr3 5496193 5496347 -212540811 - MER58A DNA MER1_type -2246 174 1 266 344 164 0 chr3 5496840 5496962 -212540196 + MIR SINE MIR 107 248 -14 217 273 0 0 chr3 5497020 5497075 -212540083 - L2 LINE L2 -5 3308 3254 269 306 189 0 chr3 5500518 5500629 -212536529 + MIR SINE MIR 20 151 -57 31 82 0 0 chr3 5501719 5501792 -212535366 + AT_rich Low_complexity Low_complexity 1 73 0 1964 142 10 0 chr3 5504705 5505008 -212532150 - AluSx SINE Alu -1 311 6 1187 46 0 0 chr3 5505148 5505299 -212531859 - L1PA4 LINE L1 -78 6077 5927 366 42 0 0 chr3 5505299 5505344 -212531814 + L1PA3 LINE L1 6105 6152 -3 261 238 138 0 chr3 5505362 5505442 -212531716 + L1MC5 LINE L1 7474 7564 -397 243 349 0 23 chr3 5506092 5506178 -212530980 - L2 LINE L2 -1 3312 3229 5014 208 89 67 chr3 5506636 5508182 -212528976 - MER45R DNA AcHobo -1 1580 1 1656 134 49 37 chr3 5508227 5508555 -212528603 + L1MA7 LINE L1 5956 6287 -4 315 303 91 51 chr3 5509409 5509584 -212527574 - MER5A DNA MER1_type -1 188 7 331 67 0 0 chr3 5509857 5509902 -212527256 - MADE1 DNA Mariner 0 80 36 29 0 0 0 chr3 5509903 5509932 -212527226 + AT_rich Low_complexity Low_complexity 1 29 0 696 236 42 23 chr3 5510245 5510508 -212526650 + L1MC5 LINE L1 7676 7943 -18 4418 186 14 44 chr3 5511500 5512480 -212524678 + L1MA9 LINE L1 5332 6282 -30 524 311 97 25 chr3 5512493 5513328 -212523830 - L1MEc LINE L1 -4716 1680 786 241 364 0 0 chr3 5514192 5514269 -212522889 - L2 LINE L2 -557 2757 2681 423 184 26 0 chr3 5514430 5514506 -212522652 - MER20 DNA MER1_type -133 86 9 951 279 114 30 chr3 5514515 5514953 -212522205 - L2 LINE L2 -690 2624 2150 180 210 37 0 chr3 5514984 5515065 -212522093 + (TA)n Simple_repeat Simple_repeat 1 84 0 969 313 93 8 chr3 5515122 5515604 -212521554 + HAL1 LINE L1 1259 1781 -726 260 240 80 0 chr3 5515612 5515687 -212521471 + HAL1 LINE L1 1950 2030 -477 1645 187 42 3 chr3 5516508 5516792 -212520366 - AluJo SINE Alu -17 295 1 22 0 0 0 chr3 5517399 5517421 -212519737 + AT_rich Low_complexity Low_complexity 1 22 0 469 248 132 45 chr3 5517441 5517707 -212519451 + L1ME2 LINE L1 5867 6155 -9 547 322 22 6 chr3 5517982 5518165 -212518993 + MIR SINE MIR 64 249 -13 474 248 33 62 chr3 5520887 5521097 -212516061 - L2 LINE L2 -1 3312 3109 25 75 0 0 chr3 5525520 5525573 -212511585 + AT_rich Low_complexity Low_complexity 1 53 0 454 311 41 15 chr3 5526657 5526853 -212510305 - MIR SINE MIR -11 251 51 204 179 0 0 chr3 5526963 5527002 -212510156 + (TATG)n Simple_repeat Simple_repeat 2 40 0 484 339 37 45 chr3 5527291 5527533 -212509625 + MIR SINE MIR 7 246 -16 1498 160 52 119 chr3 5528848 5529311 -212507847 - MSTB1 LTR MaLR 0 432 1 1986 142 3 0 chr3 5530164 5530460 -212506698 + AluSx SINE Alu 1 297 -15 182 296 0 0 chr3 5531525 5531569 -212505589 - MIR3 SINE MIR -157 51 8 386 299 92 51 chr3 5531681 5531898 -212505260 + MIR SINE MIR 19 244 -18 2466 157 25 11 chr3 5532228 5532667 -212504491 - Tigger2 DNA MER2_type -1 2717 2273 347 182 13 39 chr3 5532646 5532723 -212504435 - Tigger2 DNA MER2_type -2642 76 2 * 1949 120 0 0 chr3 5533152 5533427 -212503731 + AluSg SINE Alu 1 275 -35 225 0 0 0 chr3 5533430 5533455 -212503703 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr3 5534372 5534393 -212502765 + AT_rich Low_complexity Low_complexity 1 21 0 364 330 98 25 chr3 5535382 5535585 -212501573 + MIR SINE MIR 8 225 -37 32 0 0 0 chr3 5536630 5536662 -212500496 + AT_rich Low_complexity Low_complexity 1 32 0 186 311 66 66 chr3 5537127 5537278 -212499880 - MER5A DNA MER1_type -2 187 37 * 287 333 95 0 chr3 5537170 5537296 -212499862 + MER5A DNA MER1_type 52 189 0 182 287 194 19 chr3 5538526 5538634 -212498524 - MIR SINE MIR -65 143 17 196 329 68 0 chr3 5539280 5539353 -212497805 + MIR SINE MIR 184 261 -1 206 32 32 0 chr3 5539387 5539418 -212497740 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1601 165 0 63 chr3 5539500 5539833 -212497325 - AluJo SINE Alu 0 312 1 304 322 50 3 chr3 5540404 5540516 -212496642 - MIR SINE MIR -73 135 31 351 238 95 0 chr3 5540569 5540653 -212496505 + L2 LINE L2 3180 3271 -1 22 70 0 0 chr3 5540725 5540768 -212496390 + AT_rich Low_complexity Low_complexity 1 43 0 362 299 28 19 chr3 5540778 5540885 -212496273 - L2 LINE L2 -15 3257 3150 22 0 0 0 chr3 5541187 5541209 -212495949 + AT_rich Low_complexity Low_complexity 1 22 0 237 326 12 12 chr3 5541226 5541312 -212495846 - MIR3 SINE MIR -110 98 13 190 398 54 0 chr3 5541697 5541790 -212495368 + MIR3 SINE MIR 15 112 -96 591 213 0 0 chr3 5542976 5543112 -212494046 + CT-rich Low_complexity Low_complexity 3 138 0 288 315 148 9 chr3 5544232 5544340 -212492818 - L2 LINE L2 0 3272 3150 390 333 13 19 chr3 5544596 5544755 -212492403 + Charlie8 DNA MER1_type 102 259 -2158 21 0 0 0 chr3 5545612 5545633 -212491525 + AT_rich Low_complexity Low_complexity 1 21 0 423 289 22 33 chr3 5545926 5546106 -212491052 + MIR SINE MIR 85 262 0 250 242 10 10 chr3 5546327 5546426 -212490732 + (TA)n Simple_repeat Simple_repeat 2 100 0 308 145 0 16 chr3 5546463 5546525 -212490633 + (TA)n Simple_repeat Simple_repeat 2 62 0 329 297 141 64 chr3 5547328 5547705 -212489453 + MLT1L LTR MaLR 98 503 -8 702 324 8 32 chr3 5549087 5549334 -212487824 + MIR SINE MIR 12 252 -10 201 74 0 0 chr3 5549343 5549370 -212487788 + (ATG)n Simple_repeat Simple_repeat 2 28 0 279 345 176 0 chr3 5549383 5549548 -212487610 + MIR SINE MIR 66 259 -3 228 314 0 0 chr3 5552268 5552338 -212484820 + MIR SINE MIR 51 120 -142 273 57 0 0 chr3 5552916 5552951 -212484207 + (CA)n Simple_repeat Simple_repeat 2 36 0 650 280 100 22 chr3 5554094 5554365 -212482793 - L2 LINE L2 -2 3311 3020 396 0 0 0 chr3 5555702 5555746 -212481412 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 519 101 13 0 chr3 5556326 5556405 -212480753 - MADE1 DNA Mariner 0 80 1 654 315 63 48 chr3 5556618 5557081 -212480077 + LTR16C LTR ERVL 1 470 -21 469 88 25 12 chr3 5557432 5557512 -212479646 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 526 310 88 52 chr3 5557704 5558207 -212478951 + MLT1K LTR MaLR 66 586 -2 2709 123 24 7 chr3 5558964 5559380 -212477778 + MSTA LTR MaLR 5 427 -1 382 250 37 9 chr3 5559384 5559492 -212477666 + MIR SINE MIR 128 238 -24 25 31 0 0 chr3 5559509 5559541 -212477617 + AT_rich Low_complexity Low_complexity 1 32 0 271 255 0 0 chr3 5559969 5560020 -212477138 - L2 LINE L2 -10 3262 3212 1440 168 80 77 chr3 5561531 5561883 -212475275 + MLT1A1 LTR MaLR 11 363 -2 261 226 130 75 chr3 5562023 5562169 -212474989 + MIR SINE MIR 96 249 -13 25 0 0 0 chr3 5562374 5562399 -212474759 + AT_rich Low_complexity Low_complexity 1 25 0 423 342 71 29 chr3 5562587 5562827 -212474331 - MIR SINE MIR -10 252 3 186 43 0 0 chr3 5563236 5563259 -212473899 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 461 283 76 60 chr3 5563462 5563830 -212473328 + L1ME4a LINE L1 5555 5928 -193 610 197 9 4 chr3 5563988 5564230 -212472928 + (TA)n Simple_repeat Simple_repeat 1 243 0 187 213 25 0 chr3 5564254 5564334 -212472824 + (TA)n Simple_repeat Simple_repeat 1 82 0 1818 113 4 0 chr3 5564481 5564728 -212472430 - AluSp SINE Alu -65 248 1 5790 243 28 20 chr3 5564768 5566739 -212470419 + L1MC/D LINE L1 3586 5570 -744 5738 195 38 15 chr3 5566732 5567125 -212470033 + L1MC3 LINE L1 6464 6847 -938 * 324 0 0 0 chr3 5567125 5567161 -212469997 + (CA)n Simple_repeat Simple_repeat 1 36 0 5738 195 38 15 chr3 5567161 5568040 -212469118 + L1MC3 LINE L1 6847 7765 -20 186 206 0 0 chr3 5568458 5568492 -212468666 + L2 LINE L2 3280 3313 0 185 352 111 37 chr3 5568706 5568922 -212468236 - MIR SINE MIR -16 246 15 1974 114 20 7 chr3 5570440 5570738 -212466420 - AluSg SINE Alu -8 302 1 323 311 87 6 chr3 5570743 5570904 -212466254 - L1ME4a LINE L1 -2 6119 5946 286 297 31 78 chr3 5570986 5571114 -212466044 + MIR SINE MIR 17 138 -124 440 321 32 43 chr3 5571126 5571403 -212465755 + L1MCb LINE L1 92 365 -6031 700 266 5 18 chr3 5571629 5571847 -212465311 + L1MEc LINE L1 715 929 -5467 * 1792 224 47 63 chr3 5571846 5572722 -212464436 + L1MCb LINE L1 333 1213 -4852 2304 100 0 0 chr3 5574115 5574425 -212462733 + AluSg SINE Alu 1 310 0 21 0 0 0 chr3 5574522 5574543 -212462615 + AT_rich Low_complexity Low_complexity 1 21 0 296 256 60 8 chr3 5574647 5574764 -212462394 + L1MC4 LINE L1 7918 8040 -2 962 149 11 0 chr3 5574825 5575000 -212462158 + CT-rich Low_complexity Low_complexity 4 180 0 2082 88 0 34 chr3 5575169 5575465 -212461693 + AluY SINE Alu 6 291 -20 345 295 94 62 chr3 5575498 5575722 -212461436 - MIR SINE MIR -13 249 19 276 321 37 28 chr3 5575749 5575858 -212461300 + MIR SINE MIR 30 139 -69 297 346 163 0 chr3 5576610 5576763 -212460395 + MER5A DNA MER1_type 10 187 -2 22 0 0 0 chr3 5577398 5577420 -212459738 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 5577429 5577452 -212459706 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 186 43 0 0 chr3 5577795 5577818 -212459340 + (A)n Simple_repeat Simple_repeat 1 23 0 323 283 50 8 chr3 5577863 5577983 -212459175 - MER46C DNA MER2_type -129 209 85 24 67 0 0 chr3 5578275 5578320 -212458838 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 5578463 5578484 -212458674 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 5579860 5579884 -212457274 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 825 142 8 15 chr3 5580343 5580477 -212456681 - FLAM_C SINE Alu 0 133 1 1913 265 67 8 chr3 5580872 5581517 -212455641 - L1ME2 LINE L1 -17 6147 5465 190 197 45 0 chr3 5582166 5582232 -212454926 + GA-rich Low_complexity Low_complexity 4 72 0 307 361 32 32 chr3 5582842 5582997 -212454161 - MER5A DNA MER1_type 0 189 35 610 324 86 47 chr3 5583003 5583491 -212453667 + L3 LINE CR1 1065 1571 -6 3678 119 15 0 chr3 5584388 5584934 -212452224 + MER41A LTR ERV1 1 554 0 821 259 0 0 chr3 5585269 5585458 -212451700 - MER5A DNA MER1_type 0 189 1 2372 74 0 10 chr3 5585476 5585787 -212451371 + AluY SINE Alu 2 309 -2 286 198 0 99 chr3 5587366 5587447 -212449711 - MER66B LTR ERV1 -11 475 403 * 2216 164 57 33 chr3 5587424 5587880 -212449278 - MER41B LTR ERV1 -56 579 113 788 267 37 5 chr3 5588039 5588226 -212448932 + MER20 DNA MER1_type 1 193 -26 3370 84 8 73 chr3 5588226 5588773 -212448385 - L1M1 LINE L1 -3503 4062 3549 3086 57 0 86 chr3 5588773 5589251 -212447907 + L1PA7 LINE L1 5718 6154 0 3370 84 8 73 chr3 5589251 5589266 -212447892 - L1M1 LINE L1 -4016 3549 3535 205 318 0 0 chr3 5589852 5589915 -212447243 + MIR SINE MIR 184 246 -16 * 1869 299 120 15 chr3 5589914 5590917 -212446241 + L2 LINE L2 2185 3309 -4 2175 102 3 0 chr3 5591416 5591731 -212445427 - AluSq SINE Alu 0 313 1 21 36 0 0 chr3 5592158 5592186 -212444972 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5592194 5592467 -212444691 + AluSx SINE Alu 1 291 -21 243 0 0 0 chr3 5593438 5593465 -212443693 + (TG)n Simple_repeat Simple_repeat 2 28 0 1801 118 92 0 chr3 5593712 5593984 -212443174 + AluSg SINE Alu 2 298 -12 403 276 118 0 chr3 5594242 5594369 -212442789 + MLT1E3 LTR MaLR 8 149 -505 974 258 57 8 chr3 5594397 5594645 -212442513 + MLT1E3 LTR MaLR 171 430 -194 2300 106 0 0 chr3 5594686 5594989 -212442169 + AluSx SINE Alu 3 305 -7 23 0 0 0 chr3 5595208 5595231 -212441927 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5595806 5596028 -212441130 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5596388 5596443 -212440715 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5596470 5596542 -212440616 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5596542 5596562 -212440596 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5596562 5596706 -212440452 - MIR SINE MIR -92 170 10 332 302 75 0 chr3 5597592 5597698 -212439460 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5597700 5597745 -212439413 + MIR SINE MIR 97 141 -121 2188 132 0 3 chr3 5597790 5598101 -212439057 + AluSx SINE Alu 3 312 0 310 252 126 17 chr3 5598277 5598396 -212438762 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5598516 5598718 -212438440 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5599440 5599510 -212437648 - L2 LINE L2 -942 2372 2302 1915 139 4 0 chr3 5599547 5599820 -212437338 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5599825 5599890 -212437268 - L2 LINE L2 -1078 2236 2171 196 333 0 13 chr3 5600544 5600619 -212436539 + MIR SINE MIR 168 241 -21 24 32 0 0 chr3 5601264 5601295 -212435863 + AT_rich Low_complexity Low_complexity 1 31 0 229 239 149 30 chr3 5603056 5603123 -212434035 - MIR SINE MIR -76 186 112 2422 135 3 3 chr3 5603191 5603553 -212433605 - THE1B LTR MaLR -1 363 2 1345 175 114 25 chr3 5604276 5604556 -212432602 + AluSx SINE Alu 6 310 -2 194 286 0 0 chr3 5604571 5604620 -212432538 - MIR SINE MIR -212 50 2 554 314 58 36 chr3 5606140 5606363 -212430795 + MIR SINE MIR 8 235 -27 984 172 0 0 chr3 5606464 5606615 -212430543 - FRAM SINE Alu -26 150 1 2575 50 0 0 chr3 5606824 5607123 -212430035 - AluY SINE Alu -12 299 1 25 0 0 0 chr3 5607723 5607748 -212429410 + AT_rich Low_complexity Low_complexity 1 25 0 289 301 0 32 chr3 5608005 5608098 -212429060 - MIR SINE MIR -95 167 78 690 130 290 0 chr3 5608361 5608499 -212428659 + AluSc SINE Alu 127 304 -5 324 283 75 12 chr3 5609450 5609623 -212427535 - MER113 DNA MER1_type? -304 217 34 3506 142 39 32 chr3 5610186 5610876 -212426282 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 5610876 5610898 -212426260 + AT_rich Low_complexity Low_complexity 1 22 0 235 182 55 0 chr3 5611221 5611276 -212425882 + L2 LINE L2 3250 3307 -6 438 335 182 23 chr3 5611334 5611773 -212425385 + L2 LINE L2 2804 3312 -1 409 302 63 6 chr3 5611923 5612082 -212425076 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 5612489 5612576 -212424582 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 291 291 60 46 chr3 5612638 5612789 -212424369 - MIR SINE MIR -105 157 5 508 361 47 29 chr3 5613896 5614237 -212422921 + LTR16C LTR ERVL 137 483 -8 313 286 24 0 chr3 5614268 5614352 -212422806 - L2 LINE L2 -6 3307 3222 2605 103 16 0 chr3 5614493 5614862 -212422296 - THE1C LTR MaLR 0 375 1 194 352 114 0 chr3 5615353 5615441 -212421717 + L3b LINE CR1 1459 1556 -27 202 182 0 0 chr3 5615563 5615596 -212421562 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 279 91 71 chr3 5615646 5615844 -212421314 - MIR SINE MIR -50 212 19 23 33 0 0 chr3 5615927 5615957 -212421201 + AT_rich Low_complexity Low_complexity 1 30 0 366 268 192 27 chr3 5616099 5616323 -212420835 + MIR SINE MIR 2 262 0 764 211 155 0 chr3 5616359 5616553 -212420605 + MER58A DNA MER1_type 1 224 0 327 345 84 20 chr3 5618228 5618718 -212418440 + L1ME4a LINE L1 5304 5824 -297 702 313 175 18 chr3 5618735 5619192 -212417966 + L2 LINE L2 2102 2630 -684 1485 213 0 11 chr3 5619283 5619569 -212417589 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 5619574 5619604 -212417554 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 865 195 6 18 chr3 5619604 5619773 -212417385 + FRAM SINE Alu 1 162 -14 261 83 0 0 chr3 5619996 5620032 -212417126 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 967 264 136 40 chr3 5620130 5620580 -212416578 + MLT1H LTR MaLR 3 495 -54 297 359 31 8 chr3 5620814 5620942 -212416216 + L2 LINE L2 3142 3272 0 277 244 100 91 chr3 5621035 5621265 -212415893 + L1ME3A LINE L1 5785 6016 -154 21 36 0 0 chr3 5621396 5621424 -212415734 + AT_rich Low_complexity Low_complexity 1 28 0 1379 176 114 29 chr3 5621588 5621861 -212415297 + MER1B DNA MER1_type 1 296 -43 300 267 83 25 chr3 5622956 5623076 -212414082 + L1ME4a LINE L1 5947 6073 -48 2048 332 60 34 chr3 5623771 5624994 -212412164 - L2 LINE L2 -2050 1264 11 244 268 0 18 chr3 5625213 5625269 -212411889 + MIR SINE MIR 47 101 -161 23 0 0 0 chr3 5625314 5625337 -212411821 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 5625479 5625535 -212411623 + A-rich Low_complexity Low_complexity 6 62 0 210 190 177 76 chr3 5626092 5626171 -212410987 + L2 LINE L2 3227 3313 0 554 229 179 0 chr3 5626367 5626507 -212410651 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 5626512 5626575 -212410583 + MIR SINE MIR 13 76 -186 363 89 0 0 chr3 5626575 5626631 -212410527 - AluSp/q SINE Alu -3 300 245 1964 115 0 0 chr3 5626631 5626891 -212410267 - AluSq SINE Alu -33 280 21 420 262 40 24 chr3 5626891 5627017 -212410141 + MIR SINE MIR 61 188 -74 186 43 0 0 chr3 5628261 5628284 -212408874 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 296 291 70 12 chr3 5628328 5628500 -212408658 + L1ME3A LINE L1 5039 5220 -926 1567 262 89 46 chr3 5628547 5629378 -212407780 + L1ME3A LINE L1 5288 6154 -16 1438 111 65 0 chr3 5629413 5629629 -212407529 - MER30 DNA MER1_type 0 230 1 3100 101 28 4 chr3 5629755 5630112 -212407046 - L1PB1 LINE L1 0 6151 5776 1038 39 24 19 chr3 5630112 5630321 -212406837 + (TA)n Simple_repeat Simple_repeat 1 210 0 3100 101 28 4 chr3 5630321 5630424 -212406734 - L1PB1 LINE L1 -375 5776 5677 1958 113 57 104 chr3 5630424 5630894 -212406264 + LTR7 LTR ERV1 1 448 -2 505 84 0 0 chr3 5630896 5630967 -212406191 + HERVH LTR ERV1 1 71 -7642 * 13507 132 25 24 chr3 5630947 5633395 -212403763 + HERVH LTR ERV1 437 2995 -4718 964 127 7 0 chr3 5633374 5633524 -212403634 + HERVH LTR ERV1 3140 3290 -4423 * 1027 136 6 12 chr3 5633514 5633676 -212403482 + HERVH LTR ERV1 3492 3652 -4061 * 4585 59 5 10 chr3 5633668 5634279 -212402879 + HERVH LTR ERV1 7106 7713 0 1704 110 54 156 chr3 5634279 5634778 -212402380 + LTR7 LTR ERV1 1 448 -2 5570 187 3 5 chr3 5634803 5636419 -212400739 - L1P5 LINE L1 -470 5681 4069 1139 231 8 0 chr3 5636407 5636675 -212400483 - L1 LINE L1 -2686 4176 3907 * 12330 130 86 15 chr3 5636673 5638418 -212398740 - L1PBa LINE L1 -3257 3605 1590 2357 87 0 3 chr3 5638418 5638716 -212398442 - AluY SINE Alu -12 299 3 12330 130 86 15 chr3 5638716 5639744 -212397414 - L1PBa LINE L1 -5272 1590 636 1037 159 20 0 chr3 5639746 5639941 -212397217 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 5640044 5640081 -212397077 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 5641298 5641320 -212395838 + AT_rich Low_complexity Low_complexity 1 22 0 276 340 60 0 chr3 5641345 5641445 -212395713 + MIR SINE MIR 57 162 -100 2483 69 0 3 chr3 5641758 5642063 -212395095 - AluSg SINE Alu -6 304 1 768 256 67 0 chr3 5642821 5643016 -212394142 + MIR SINE MIR 28 235 -27 224 295 152 0 chr3 5643778 5643883 -212393275 - MIR3 SINE MIR -25 183 63 889 197 57 0 chr3 5644321 5644514 -212392644 - LTR16A1 LTR ERVL 0 457 254 403 344 42 47 chr3 5644741 5644933 -212392225 + MIR SINE MIR 20 210 -52 213 363 24 24 chr3 5645172 5645340 -212391818 - MIR SINE MIR -92 170 3 263 203 14 0 chr3 5646438 5646507 -212390651 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1209 243 42 48 chr3 5648676 5649158 -212388000 - MER39 LTR ERV1 -20 687 1 831 167 0 0 chr3 5649338 5649470 -212387688 + AluSq/x SINE Alu 1 132 -181 2153 122 7 7 chr3 5650470 5650774 -212386384 + AluSx SINE Alu 1 304 -8 213 94 0 0 chr3 5650816 5650848 -212386310 + (TG)n Simple_repeat Simple_repeat 1 32 0 2274 151 0 34 chr3 5650946 5651383 -212385775 - L1MA6 LINE L1 -1 6299 5878 237 209 233 12 chr3 5651384 5651470 -212385688 + MER5A DNA MER1_type 77 181 -8 209 393 14 48 chr3 5651489 5651634 -212385524 + MIR SINE MIR 50 189 -73 353 250 46 46 chr3 5652168 5652276 -212384882 - MIR3 SINE MIR -47 161 54 21 0 0 0 chr3 5652426 5652447 -212384711 + AT_rich Low_complexity Low_complexity 1 21 0 1305 99 42 0 chr3 5652622 5652814 -212384344 + L1PA13 LINE L1 5963 6162 -1 247 111 19 19 chr3 5654242 5654296 -212382862 + (TTTTC)n Simple_repeat Simple_repeat 4 57 0 210 67 67 0 chr3 5654324 5654369 -212382789 + CT-rich Low_complexity Low_complexity 1 48 0 603 236 15 64 chr3 5654423 5654626 -212382532 + L1ME3 LINE L1 5940 6132 -30 601 233 114 52 chr3 5654929 5655156 -212382002 - L1MC4 LINE L1 -1 7873 7662 1592 177 69 0 chr3 5655156 5655444 -212381714 - AluJo SINE Alu -4 308 1 601 233 114 52 chr3 5655444 5655486 -212381672 - L1MC4 LINE L1 -212 7662 7624 1459 198 50 3 chr3 5655486 5655784 -212381374 - AluJb SINE Alu 0 312 1 601 233 114 52 chr3 5655784 5655918 -212381240 - L1MC4 LINE L1 -250 7624 7426 480 258 42 42 chr3 5656189 5656379 -212380779 - L1MC4a LINE L1 -439 7369 7180 525 277 63 29 chr3 5656503 5656638 -212380520 - L1MC4 LINE L1 -1081 6961 6813 203 0 0 36 chr3 5656638 5656666 -212380492 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 5656666 5656768 -212380390 - L1MC4 LINE L1 -1229 6813 6716 322 261 12 0 chr3 5656830 5656924 -212380234 - L1MC4 LINE L1 -1458 6545 6443 421 251 127 59 chr3 5657629 5658107 -212379051 + MER34B LTR ERV1 6 565 0 21 36 0 0 chr3 5658446 5658474 -212378684 + AT_rich Low_complexity Low_complexity 1 28 0 200 83 0 28 chr3 5658524 5658560 -212378598 + (CAT)n Simple_repeat Simple_repeat 2 36 0 276 367 39 8 chr3 5658560 5658688 -212378470 - MIR3 SINE MIR -70 138 7 291 353 0 17 chr3 5658797 5658913 -212378245 + MIR SINE MIR 33 146 -62 1210 254 90 95 chr3 5660175 5660459 -212376699 + HAL1b LINE L1 83 367 -981 1396 196 28 35 chr3 5660459 5660744 -212376414 + AluJo SINE Alu 1 283 -19 1210 254 90 95 chr3 5660744 5660908 -212376250 + HAL1b LINE L1 367 530 -818 2483 81 0 3 chr3 5660908 5661217 -212375941 + AluSq SINE Alu 1 308 -5 1210 254 90 95 chr3 5661217 5662039 -212375119 + HAL1b LINE L1 530 1348 0 313 301 49 42 chr3 5662982 5663125 -212374033 - L1MC4 LINE L1 -1340 6702 6559 540 141 12 0 chr3 5663160 5663245 -212373913 + AluJ/FLAM SINE Alu 1 86 -226 1262 249 34 25 chr3 5664462 5664787 -212372371 + MER45C DNA AcHobo 626 953 0 318 266 53 21 chr3 5664787 5664881 -212372277 - MIR SINE MIR -138 124 28 280 100 0 50 chr3 5665103 5665163 -212371995 + (TTCCC)n Simple_repeat Simple_repeat 4 60 0 713 333 17 8 chr3 5666676 5666916 -212370242 - MIR SINE MIR -18 244 3 220 321 44 57 chr3 5667004 5667163 -212369995 - L2 LINE L2 -182 3090 2934 22 0 0 0 chr3 5667701 5667723 -212369435 + AT_rich Low_complexity Low_complexity 1 22 0 2326 291 105 32 chr3 5667723 5669364 -212367794 - L2 LINE L2 0 3313 1266 346 281 31 62 chr3 5669444 5669636 -212367522 + LTR37A LTR ERV1 55 240 -186 284 135 0 0 chr3 5669636 5669688 -212367470 - L1MB8 LINE L1 0 6178 6127 846 204 25 0 chr3 5669691 5669887 -212367271 + LTR37A LTR ERV1 218 418 -8 1708 215 52 48 chr3 5670151 5670654 -212366504 - MLT1D LTR MaLR 0 505 1 1914 147 47 26 chr3 5671398 5671739 -212365419 - MER7A DNA MER2_type 0 346 1 2391 46 0 10 chr3 5672914 5673255 -212363903 - AluY SINE Alu 0 311 1 340 272 99 74 chr3 5673629 5673912 -212363246 - L1ME4a LINE L1 -221 5900 5611 1679 168 30 16 chr3 5674244 5674370 -212362788 + AluJb SINE Alu 1 124 -188 333 0 0 0 chr3 5674370 5674407 -212362751 + (CA)n Simple_repeat Simple_repeat 2 38 0 1679 168 30 16 chr3 5674407 5674584 -212362574 + AluJb SINE Alu 124 308 -4 1551 174 87 0 chr3 5675173 5675438 -212361720 + AluSx SINE Alu 1 288 -24 1347 237 47 60 chr3 5675961 5676027 -212361131 - MLT1C LTR MaLR 0 467 402 1880 173 0 3 chr3 5676027 5676333 -212360825 + AluJb SINE Alu 1 305 -7 1347 237 47 60 chr3 5676333 5676734 -212360424 - MLT1C LTR MaLR -65 402 6 1999 149 10 0 chr3 5676759 5677067 -212360091 - AluSq SINE Alu -2 311 1 249 244 58 35 chr3 5677183 5677269 -212359889 + MER103 DNA DNA 69 156 -10 389 232 125 9 chr3 5677713 5677825 -212359333 - MIR SINE MIR -64 198 74 285 326 0 21 chr3 5678647 5678742 -212358416 + L2 LINE L2 3219 3311 -2 271 231 66 55 chr3 5678947 5679038 -212358120 - L2 LINE L2 -1 3312 3221 23 0 0 0 chr3 5679585 5679608 -212357550 + AT_rich Low_complexity Low_complexity 1 23 0 2352 224 20 27 chr3 5680098 5680660 -212356498 - MER74A LTR ERVL 0 558 1 486 151 151 129 chr3 5680702 5680927 -212356231 + MER106A DNA MER1_type 1 230 -6 237 208 57 0 chr3 5681463 5681516 -212355642 + U6 snRNA snRNA 24 79 -28 387 262 16 8 chr3 5681571 5681697 -212355461 + L1ME2 LINE L1 6038 6164 0 523 306 36 39 chr3 5681942 5682183 -212354975 - MIR SINE MIR 0 262 23 213 341 32 32 chr3 5683092 5683215 -212353943 - L2 LINE L2 -217 3055 2933 1900 250 120 56 chr3 5683608 5684356 -212352802 - MER21B LTR ERV1 -48 815 20 320 235 20 71 chr3 5684357 5684455 -212352703 - MER21B LTR ERV1 -759 104 12 273 373 55 39 chr3 5685108 5685140 -212352018 + MIR3 SINE MIR 1 31 -177 1464 163 22 117 chr3 5685140 5685552 -212351606 + MLT1A2 LTR MaLR 2 374 0 273 373 55 39 chr3 5685552 5685671 -212351487 + MIR3 SINE MIR 31 155 -53 382 237 21 0 chr3 5685719 5685812 -212351346 - MER117 DNA MER1_type -35 162 68 284 0 28 0 chr3 5686429 5686465 -212350693 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 394 267 298 0 chr3 5687721 5687852 -212349306 + MER45A DNA AcHobo 1 170 -8 530 253 222 0 chr3 5689639 5689833 -212347325 - MIR SINE MIR -21 241 5 196 231 0 19 chr3 5689861 5689913 -212347245 - MIR SINE MIR -32 230 180 236 366 0 0 chr3 5690028 5690110 -212347048 + Charlie1 DNA MER1_type 1 82 -2679 27 29 0 0 chr3 5690573 5690607 -212346551 + AT_rich Low_complexity Low_complexity 1 34 0 1925 262 59 23 chr3 5691239 5691811 -212345347 + MLT1E LTR MaLR 1 593 0 26 30 0 0 chr3 5692109 5692142 -212345016 + AT_rich Low_complexity Low_complexity 1 33 0 211 374 84 7 chr3 5694628 5694783 -212342375 - MIR SINE MIR -50 212 46 228 213 0 0 chr3 5695265 5695326 -212341832 + CT-rich Low_complexity Low_complexity 2 62 0 388 266 132 60 chr3 5695375 5695739 -212341419 + L1MCc LINE L1 23 412 -6011 1630 263 89 30 chr3 5695989 5696171 -212340987 + L1MCc LINE L1 828 998 -5632 2120 184 26 26 chr3 5696171 5696595 -212340563 + MSTB LTR MaLR 1 424 -2 1630 263 89 30 chr3 5696595 5697259 -212339899 + L1MCc LINE L1 998 1736 -4894 2350 106 0 0 chr3 5697306 5697608 -212339550 + AluSx SINE Alu 1 302 -10 789 273 28 22 chr3 5697662 5698094 -212339064 + L1MCc LINE L1 2138 2478 -4463 667 276 98 33 chr3 5698085 5698685 -212338473 - L1MC4 LINE L1 -127 7681 7186 * 1685 118 33 0 chr3 5699088 5699333 -212337825 - AluSp SINE Alu -22 291 39 499 327 69 98 chr3 5699354 5700136 -212337022 + L2 LINE L2 2218 2976 -338 1608 172 48 0 chr3 5700262 5700552 -212336606 - AluJb SINE Alu -8 304 1 249 316 89 0 chr3 5700654 5700733 -212336425 + L2 LINE L2 3150 3235 -37 229 257 86 29 chr3 5700735 5700805 -212336353 - L2 LINE L2 -8 3305 3232 403 327 25 6 chr3 5701541 5701700 -212335458 - MIR3 SINE MIR -2 206 45 619 256 45 25 chr3 5701956 5702155 -212335003 + MIR SINE MIR 46 248 -14 216 350 82 0 chr3 5704693 5704790 -212332368 - MIR3 SINE MIR -48 160 56 406 289 87 0 chr3 5705283 5705387 -212331771 + L2 LINE L2 3158 3270 -2 189 277 21 0 chr3 5707697 5707744 -212329414 + L2 LINE L2 2925 2972 -342 270 339 68 41 chr3 5707809 5708030 -212329128 + L2 LINE L2 3085 3311 -2 392 287 64 35 chr3 5708492 5708711 -212328447 - MIR SINE MIR -17 245 20 310 259 99 15 chr3 5709216 5709347 -212327811 + MIR SINE MIR 106 247 -15 1759 203 30 86 chr3 5709355 5709878 -212327280 + MLT1D LTR MaLR 1 618 -8 23 0 0 0 chr3 5711183 5711206 -212325952 + AT_rich Low_complexity Low_complexity 1 23 0 42095 35 25 2 chr3 5711544 5717555 -212319603 - L1PA2 LINE L1 0 6155 1 338 291 122 35 chr3 5718855 5719085 -212318073 - MIR SINE MIR -12 250 1 338 310 20 0 chr3 5720277 5720377 -212316781 + L1MC4 LINE L1 6602 6703 -1339 316 316 0 50 chr3 5720356 5720495 -212316663 - L1MC4 LINE L1 -1340 6702 6571 * 676 152 29 14 chr3 5720884 5721022 -212316136 - L1MB1 LINE L1 -6 6162 6023 2173 181 17 67 chr3 5721094 5721570 -212315588 + MER66A LTR ERV1 27 478 0 22 0 0 0 chr3 5722998 5723020 -212314138 + AT_rich Low_complexity Low_complexity 1 22 0 645 295 18 5 chr3 5724312 5724529 -212312629 + MER58A DNA MER1_type 2 221 -3 348 239 182 115 chr3 5725480 5725534 -212311624 - MER58A DNA MER1_type -2197 223 174 1120 129 31 26 chr3 5725534 5725728 -212311430 - L1PA16 LINE L1 -10 6156 5962 348 239 182 115 chr3 5725728 5725882 -212311276 - MER58A DNA MER1_type -2246 174 1 265 344 164 0 chr3 5726374 5726496 -212310662 + MIR SINE MIR 107 248 -14 221 273 0 0 chr3 5726554 5726609 -212310549 - L2 LINE L2 -5 3308 3254 269 306 189 0 chr3 5730052 5730163 -212306995 + MIR SINE MIR 20 151 -57 31 82 0 0 chr3 5731253 5731326 -212305832 + AT_rich Low_complexity Low_complexity 1 73 0 1988 142 10 0 chr3 5734239 5734542 -212302616 - AluSx SINE Alu -1 311 6 1201 46 0 0 chr3 5734682 5734833 -212302325 - L1PA4 LINE L1 -78 6077 5927 363 42 0 0 chr3 5734833 5734878 -212302280 + L1PA3 LINE L1 6105 6152 -3 254 238 138 0 chr3 5734896 5734976 -212302182 + L1MC5 LINE L1 7474 7564 -397 239 356 22 11 chr3 5735631 5735721 -212301437 - L2 LINE L2 0 3313 3223 4734 199 107 39 chr3 5736174 5737446 -212299712 - MER45R DNA AcHobo -1 1580 222 260 130 0 0 chr3 5737590 5737636 -212299522 - MER45C DNA AcHobo -813 140 95 2005 114 20 7 chr3 5738327 5738625 -212298533 - AluSg SINE Alu -8 302 1 322 311 87 6 chr3 5738630 5738791 -212298367 - L1ME4a LINE L1 -2 6119 5946 281 297 31 78 chr3 5738873 5739001 -212298157 + MIR SINE MIR 17 138 -124 429 321 32 43 chr3 5739013 5739290 -212297868 + L1MCb LINE L1 92 365 -6031 679 266 5 18 chr3 5739516 5739734 -212297424 + L1MEc LINE L1 715 929 -5467 * 1759 224 47 63 chr3 5739733 5740609 -212296549 + L1MCb LINE L1 333 1213 -4852 2076 128 0 0 chr3 5742002 5742300 -212294858 + AluSg SINE Alu 1 298 -12 403 276 118 0 chr3 5742558 5742685 -212294473 + MLT1E3 LTR MaLR 8 149 -505 974 258 57 8 chr3 5742713 5742961 -212294197 + MLT1E3 LTR MaLR 171 430 -194 2300 106 0 0 chr3 5743002 5743305 -212293853 + AluSx SINE Alu 3 305 -7 21 43 0 0 chr3 5743524 5743547 -212293611 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5744122 5744344 -212292814 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5744704 5744759 -212292399 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5744786 5744858 -212292300 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5744858 5744878 -212292280 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5744878 5745022 -212292136 - MIR SINE MIR -92 170 10 332 302 75 0 chr3 5745908 5746014 -212291144 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5746016 5746061 -212291097 + MIR SINE MIR 97 141 -121 2188 132 0 3 chr3 5746106 5746417 -212290741 + AluSx SINE Alu 3 312 0 310 252 126 17 chr3 5746593 5746712 -212290446 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5746832 5747034 -212290124 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5747756 5747826 -212289332 - L2 LINE L2 -942 2372 2302 1915 139 4 0 chr3 5747863 5748136 -212289022 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5748141 5748206 -212288952 - L2 LINE L2 -1078 2236 2171 196 333 0 13 chr3 5748860 5748935 -212288223 + MIR SINE MIR 168 241 -21 24 32 0 0 chr3 5749580 5749611 -212287547 + AT_rich Low_complexity Low_complexity 1 31 0 987 74 0 15 chr3 5750577 5750712 -212286446 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr3 5751149 5751177 -212285981 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5751185 5751458 -212285700 + AluSx SINE Alu 1 291 -21 340 272 99 74 chr3 5751942 5752225 -212284933 - L1ME4a LINE L1 -221 5900 5611 2191 124 0 3 chr3 5752552 5752859 -212284299 + AluSx SINE Alu 1 306 -6 276 340 60 0 chr3 5753172 5753272 -212283886 - MIR SINE MIR -100 162 57 22 0 0 0 chr3 5753297 5753319 -212283839 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 5754536 5754573 -212282585 + AT_rich Low_complexity Low_complexity 1 37 0 1037 159 20 0 chr3 5754676 5754871 -212282287 + L1PBa LINE L1 2 200 -6663 3402 120 23 0 chr3 5754873 5755901 -212281257 + L1PBa LINE L1 636 1834 -5029 1502 92 7 63 chr3 5755901 5756204 -212280954 + AluY SINE Alu 3 288 -23 211 197 45 0 chr3 5761929 5761995 -212275163 + (CCAA)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr3 5762504 5762529 -212274629 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 5767064 5767086 -212270072 + AT_rich Low_complexity Low_complexity 1 22 0 192 111 0 0 chr3 5767165 5767201 -212269957 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr3 5767290 5767316 -212269842 + AT_rich Low_complexity Low_complexity 1 26 0 716 81 52 17 chr3 5767368 5767540 -212269618 + (CAAA)n Simple_repeat Simple_repeat 2 179 0 216 0 0 0 chr3 5767958 5767982 -212269176 + (T)n Simple_repeat Simple_repeat 1 24 0 183 42 0 0 chr3 5768618 5768642 -212268516 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 3951 143 53 18 chr3 5773254 5773411 -212263747 - L1PBa LINE L1 -4873 1990 1840 2357 87 0 3 chr3 5773411 5773709 -212263449 - AluY SINE Alu -12 299 3 3951 143 53 18 chr3 5773709 5774596 -212262562 - L1PBa LINE L1 -5023 1840 765 246 192 0 0 chr3 5776957 5777009 -212260149 + A-rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 5777153 5777176 -212259982 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 5778736 5778758 -212258400 + AT_rich Low_complexity Low_complexity 1 22 0 322 297 0 0 chr3 5782938 5783029 -212254129 + L1MC4 LINE L1 6613 6703 -1339 198 0 0 0 chr3 5783082 5783104 -212254054 + (TA)n Simple_repeat Simple_repeat 2 23 0 3927 148 26 8 chr3 5784053 5785179 -212251979 + L1PBa LINE L1 2460 3605 -3257 1139 231 8 0 chr3 5785177 5785445 -212251713 + L1 LINE L1 3907 4176 -2686 * 7948 118 6 10 chr3 5785435 5786684 -212250474 + L1P LINE L1 4071 5315 -831 732 134 0 0 chr3 5786853 5786965 -212250193 + MER41A LTR ERV1 443 554 0 821 259 0 0 chr3 5787300 5787489 -212249669 - MER5A DNA MER1_type 0 189 1 2396 68 0 10 chr3 5787507 5787817 -212249341 + AluY SINE Alu 2 308 -3 286 198 0 99 chr3 5789397 5789478 -212247680 - MER66B LTR ERV1 -11 475 403 * 2192 167 57 33 chr3 5789455 5789911 -212247247 - MER41B LTR ERV1 -56 579 113 788 267 37 5 chr3 5790070 5790257 -212246901 + MER20 DNA MER1_type 1 193 -26 3339 85 8 73 chr3 5790257 5790804 -212246354 - L1M1 LINE L1 -3503 4062 3549 3086 57 0 86 chr3 5790804 5791282 -212245876 + L1PA7 LINE L1 5718 6154 0 3339 85 8 73 chr3 5791282 5791297 -212245861 - L1M1 LINE L1 -4016 3549 3535 197 318 0 0 chr3 5791883 5791946 -212245212 + MIR SINE MIR 184 246 -16 * 1869 299 120 15 chr3 5791945 5792948 -212244210 + L2 LINE L2 2185 3309 -4 2201 96 3 0 chr3 5793447 5793762 -212243396 - AluSq SINE Alu 0 313 1 21 36 0 0 chr3 5794189 5794217 -212242941 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5794225 5794498 -212242660 + AluSx SINE Alu 1 291 -21 243 0 0 0 chr3 5795469 5795496 -212241662 + (TG)n Simple_repeat Simple_repeat 2 28 0 1801 118 92 0 chr3 5795743 5796015 -212241143 + AluSg SINE Alu 2 298 -12 403 276 118 0 chr3 5796273 5796400 -212240758 + MLT1E3 LTR MaLR 8 149 -505 951 263 38 8 chr3 5796428 5796664 -212240494 + MLT1E3 LTR MaLR 171 413 -211 2349 104 0 0 chr3 5796717 5797025 -212240133 + AluSx SINE Alu 3 310 -2 23 0 0 0 chr3 5797244 5797267 -212239891 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5797842 5798064 -212239094 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5798428 5798483 -212238675 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5798510 5798582 -212238576 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5798582 5798602 -212238556 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5798602 5798746 -212238412 - MIR SINE MIR -92 170 10 325 302 75 0 chr3 5799632 5799738 -212237420 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5799740 5799785 -212237373 + MIR SINE MIR 97 141 -121 2134 139 0 3 chr3 5799830 5800139 -212237019 + AluSx SINE Alu 3 310 -2 310 252 126 17 chr3 5800309 5800428 -212236730 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5800548 5800750 -212236408 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5801472 5801542 -212235616 - L2 LINE L2 -942 2372 2302 1897 143 4 0 chr3 5801579 5801852 -212235306 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5801857 5801922 -212235236 - L2 LINE L2 -1078 2236 2171 190 297 247 18 chr3 5802015 5802396 -212234762 - L2 LINE L2 -1319 1995 1528 196 333 0 13 chr3 5802576 5802651 -212234507 + MIR SINE MIR 168 241 -21 23 33 0 0 chr3 5803296 5803326 -212233832 + AT_rich Low_complexity Low_complexity 1 30 0 229 239 149 30 chr3 5805087 5805154 -212232004 - MIR SINE MIR -76 186 112 2431 135 3 3 chr3 5805221 5805584 -212231574 - THE1B LTR MaLR 0 364 2 1374 167 116 25 chr3 5806307 5806583 -212230575 + AluSx SINE Alu 6 306 -6 194 286 0 0 chr3 5806606 5806655 -212230503 - MIR SINE MIR -212 50 2 554 305 58 36 chr3 5808176 5808399 -212228759 + MIR SINE MIR 8 235 -27 1016 166 0 28 chr3 5808470 5808651 -212228507 - FRAM SINE Alu -1 175 1 2524 64 0 0 chr3 5808860 5809158 -212228000 - AluY SINE Alu -13 298 1 25 0 0 0 chr3 5809758 5809783 -212227375 + AT_rich Low_complexity Low_complexity 1 25 0 289 301 0 32 chr3 5810040 5810133 -212227025 - MIR SINE MIR -95 167 78 676 132 294 0 chr3 5810396 5810532 -212226626 + AluSc SINE Alu 127 302 -7 324 283 75 12 chr3 5811483 5811656 -212225502 - MER113 DNA MER1_type? -304 217 34 3518 142 39 29 chr3 5812219 5812907 -212224251 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 5812907 5812929 -212224229 + AT_rich Low_complexity Low_complexity 1 22 0 235 182 55 0 chr3 5813252 5813307 -212223851 + L2 LINE L2 3250 3307 -6 438 335 182 23 chr3 5813365 5813804 -212223354 + L2 LINE L2 2804 3312 -1 384 308 63 6 chr3 5813954 5814113 -212223045 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 5814520 5814607 -212222551 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 291 291 60 46 chr3 5814669 5814820 -212222338 - MIR SINE MIR -105 157 5 508 361 47 29 chr3 5815927 5816268 -212220890 + LTR16C LTR ERVL 137 483 -8 313 286 24 0 chr3 5816299 5816383 -212220775 - L2 LINE L2 -6 3307 3222 2605 103 16 0 chr3 5816524 5816893 -212220265 - THE1C LTR MaLR 0 375 1 206 336 173 0 chr3 5817368 5817472 -212219686 + L3b LINE CR1 1435 1556 -27 202 182 0 0 chr3 5817594 5817627 -212219531 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 279 91 71 chr3 5817677 5817875 -212219283 - MIR SINE MIR -50 212 19 389 263 192 27 chr3 5818130 5818354 -212218804 + MIR SINE MIR 2 262 0 746 216 155 0 chr3 5818390 5818584 -212218574 + MER58A DNA MER1_type 1 224 0 319 345 84 20 chr3 5820259 5820749 -212216409 + L1ME4a LINE L1 5304 5824 -297 712 319 168 17 chr3 5820766 5821242 -212215916 + L2 LINE L2 2102 2649 -665 1491 213 0 11 chr3 5821314 5821600 -212215558 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 5821605 5821635 -212215523 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 865 195 6 18 chr3 5821635 5821804 -212215354 + FRAM SINE Alu 1 162 -14 252 86 0 0 chr3 5822027 5822062 -212215096 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 986 262 136 40 chr3 5822162 5822612 -212214546 + MLT1H LTR MaLR 3 495 -54 299 333 37 9 chr3 5822846 5822954 -212214204 + L2 LINE L2 3142 3252 -20 277 244 100 91 chr3 5823067 5823297 -212213861 + L1ME3A LINE L1 5785 6016 -154 22 56 0 0 chr3 5823374 5823410 -212213748 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 5823428 5823456 -212213702 + AT_rich Low_complexity Low_complexity 1 28 0 1379 176 114 29 chr3 5823620 5823893 -212213265 + MER1B DNA MER1_type 1 296 -43 300 267 83 25 chr3 5824988 5825108 -212212050 + L1ME4a LINE L1 5947 6073 -48 1860 331 77 36 chr3 5825803 5827007 -212210151 - L2 LINE L2 -2050 1264 11 258 237 51 17 chr3 5827223 5827282 -212209876 + MIR SINE MIR 41 101 -161 23 0 0 0 chr3 5827327 5827350 -212209808 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 5827492 5827548 -212209610 + A-rich Low_complexity Low_complexity 6 62 0 210 190 177 76 chr3 5828107 5828186 -212208972 + L2 LINE L2 3227 3313 0 554 229 179 0 chr3 5828382 5828522 -212208636 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 5828527 5828590 -212208568 + MIR SINE MIR 13 76 -186 363 89 0 0 chr3 5828590 5828646 -212208512 - AluSp/q SINE Alu -3 300 245 1932 119 0 0 chr3 5828646 5828906 -212208252 - AluSq SINE Alu -33 280 21 420 262 40 24 chr3 5828906 5829032 -212208126 + MIR SINE MIR 61 188 -74 186 43 0 0 chr3 5830278 5830301 -212206857 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 283 296 70 12 chr3 5830345 5830517 -212206641 + L1ME3A LINE L1 5039 5220 -926 1586 261 89 46 chr3 5830564 5831395 -212205763 + L1ME3A LINE L1 5288 6154 -16 1438 111 65 0 chr3 5831430 5831646 -212205512 - MER30 DNA MER1_type 0 230 1 3162 95 32 2 chr3 5831772 5832129 -212205029 - L1PB1 LINE L1 0 6151 5775 940 79 14 0 chr3 5832129 5832268 -212204890 + (TA)n Simple_repeat Simple_repeat 1 141 0 3162 95 32 2 chr3 5832268 5832371 -212204787 - L1PB1 LINE L1 -376 5775 5677 1972 111 57 104 chr3 5832371 5832841 -212204317 + LTR7 LTR ERV1 1 448 -2 481 99 0 0 chr3 5832843 5832914 -212204244 + HERVH LTR ERV1 1 71 -7642 * 8649 119 34 23 chr3 5832894 5834442 -212202716 + HERVH LTR ERV1 460 2172 -5541 629 41 41 0 chr3 5884607 5884704 -212152454 + (TA)n Simple_repeat Simple_repeat 2 102 0 646 136 10 0 chr3 5884704 5884807 -212152351 - L1P5 LINE L1 -371 5780 5677 2009 110 55 104 chr3 5884807 5885278 -212151880 + LTR7 LTR ERV1 1 448 -2 492 99 0 0 chr3 5885280 5885351 -212151807 + HERVH LTR ERV1 1 71 -7642 * 13676 127 22 22 chr3 5885340 5887779 -212149379 + HERVH LTR ERV1 431 2995 -4718 964 127 7 0 chr3 5887758 5887908 -212149250 + HERVH LTR ERV1 3140 3290 -4423 * 1027 136 6 12 chr3 5887898 5888060 -212149098 + HERVH LTR ERV1 3492 3652 -4061 * 4585 59 5 10 chr3 5888052 5888663 -212148495 + HERVH LTR ERV1 7106 7713 0 1704 110 54 156 chr3 5888663 5889162 -212147996 + LTR7 LTR ERV1 1 448 -2 5570 187 3 5 chr3 5889187 5890803 -212146355 - L1P5 LINE L1 -470 5681 4069 1139 231 8 0 chr3 5890791 5891059 -212146099 - L1 LINE L1 -2686 4176 3907 * 12330 130 86 15 chr3 5891057 5892802 -212144356 - L1PBa LINE L1 -3257 3605 1590 2357 87 0 3 chr3 5892802 5893100 -212144058 - AluY SINE Alu -12 299 3 12330 130 86 15 chr3 5893100 5894128 -212143030 - L1PBa LINE L1 -5272 1590 636 1037 159 20 0 chr3 5894130 5894325 -212142833 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 5894428 5894465 -212142693 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 5895682 5895704 -212141454 + AT_rich Low_complexity Low_complexity 1 22 0 276 340 60 0 chr3 5895729 5895829 -212141329 + MIR SINE MIR 57 162 -100 2483 69 0 3 chr3 5896142 5896447 -212140711 - AluSg SINE Alu -6 304 1 768 256 67 0 chr3 5897205 5897400 -212139758 + MIR SINE MIR 28 235 -27 224 295 152 0 chr3 5898162 5898267 -212138891 - MIR3 SINE MIR -25 183 63 889 197 57 0 chr3 5898705 5898898 -212138260 - LTR16A1 LTR ERVL 0 457 254 403 344 42 47 chr3 5899125 5899317 -212137841 + MIR SINE MIR 20 210 -52 213 363 24 24 chr3 5899556 5899724 -212137434 - MIR SINE MIR -92 170 3 263 203 14 0 chr3 5900822 5900891 -212136267 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1209 243 42 48 chr3 5903060 5903542 -212133616 - MER39 LTR ERV1 -20 687 1 831 167 0 0 chr3 5903722 5903854 -212133304 + AluSq/x SINE Alu 1 132 -181 2153 122 7 7 chr3 5904853 5905157 -212132001 + AluSx SINE Alu 1 304 -8 213 94 0 0 chr3 5905199 5905231 -212131927 + (TG)n Simple_repeat Simple_repeat 1 32 0 2274 151 0 34 chr3 5905329 5905766 -212131392 - L1MA6 LINE L1 -1 6299 5878 237 209 233 12 chr3 5905767 5905853 -212131305 + MER5A DNA MER1_type 77 181 -8 209 393 14 48 chr3 5905872 5906017 -212131141 + MIR SINE MIR 50 189 -73 353 250 46 46 chr3 5906551 5906659 -212130499 - MIR3 SINE MIR -47 161 54 21 0 0 0 chr3 5906809 5906830 -212130328 + AT_rich Low_complexity Low_complexity 1 21 0 1305 99 42 0 chr3 5907005 5907197 -212129961 + L1PA13 LINE L1 5963 6162 -1 247 111 19 19 chr3 5908625 5908679 -212128479 + (TTTTC)n Simple_repeat Simple_repeat 4 57 0 210 67 67 0 chr3 5908707 5908752 -212128406 + CT-rich Low_complexity Low_complexity 1 48 0 603 236 15 64 chr3 5908806 5909009 -212128149 + L1ME3 LINE L1 5940 6132 -30 601 233 114 52 chr3 5909312 5909539 -212127619 - L1MC4 LINE L1 -1 7873 7662 1592 177 69 0 chr3 5909539 5909827 -212127331 - AluJo SINE Alu -4 308 1 601 233 114 52 chr3 5909827 5909869 -212127289 - L1MC4 LINE L1 -212 7662 7624 1454 198 50 3 chr3 5909869 5910167 -212126991 - AluJb SINE Alu 0 312 1 601 233 114 52 chr3 5910167 5910301 -212126857 - L1MC4 LINE L1 -250 7624 7426 480 258 42 42 chr3 5910572 5910762 -212126396 - L1MC4a LINE L1 -439 7369 7180 525 277 63 29 chr3 5910886 5911021 -212126137 - L1MC4 LINE L1 -1081 6961 6813 203 0 0 36 chr3 5911021 5911049 -212126109 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 5911049 5911151 -212126007 - L1MC4 LINE L1 -1229 6813 6716 322 261 12 0 chr3 5911213 5911307 -212125851 - L1MC4 LINE L1 -1458 6545 6443 421 251 127 59 chr3 5912012 5912490 -212124668 + MER34B LTR ERV1 6 565 0 21 36 0 0 chr3 5912829 5912857 -212124301 + AT_rich Low_complexity Low_complexity 1 28 0 200 83 0 28 chr3 5912907 5912943 -212124215 + (CAT)n Simple_repeat Simple_repeat 2 36 0 276 367 39 8 chr3 5912943 5913071 -212124087 - MIR3 SINE MIR -70 138 7 291 353 0 17 chr3 5913180 5913296 -212123862 + MIR SINE MIR 33 146 -62 26 30 0 0 chr3 5914073 5914106 -212123052 + AT_rich Low_complexity Low_complexity 1 33 0 1153 254 93 95 chr3 5914558 5914842 -212122316 + HAL1b LINE L1 83 366 -982 1396 196 28 35 chr3 5914842 5915127 -212122031 + AluJo SINE Alu 1 283 -19 1153 254 93 95 chr3 5915127 5915292 -212121866 + HAL1b LINE L1 366 530 -818 2475 81 0 3 chr3 5915292 5915600 -212121558 + AluSq SINE Alu 1 307 -6 1153 254 93 95 chr3 5915600 5916418 -212120740 + HAL1b LINE L1 530 1348 0 313 301 49 42 chr3 5917531 5917674 -212119484 - L1MC4 LINE L1 -1340 6702 6559 568 151 0 0 chr3 5917709 5917795 -212119363 + AluJ/FLAM SINE Alu 1 86 -226 1262 249 34 25 chr3 5919014 5919339 -212117819 + MER45C DNA AcHobo 626 953 0 318 266 53 21 chr3 5919339 5919433 -212117725 - MIR SINE MIR -138 124 28 280 100 0 50 chr3 5919655 5919715 -212117443 + (TTCCC)n Simple_repeat Simple_repeat 4 60 0 713 333 17 8 chr3 5921228 5921468 -212115690 - MIR SINE MIR -18 244 3 220 321 44 57 chr3 5921556 5921715 -212115443 - L2 LINE L2 -182 3090 2934 22 0 0 0 chr3 5922253 5922275 -212114883 + AT_rich Low_complexity Low_complexity 1 22 0 2330 291 105 32 chr3 5922275 5923916 -212113242 - L2 LINE L2 0 3313 1266 346 281 31 62 chr3 5923996 5924188 -212112970 + LTR37A LTR ERV1 55 240 -186 284 135 0 0 chr3 5924188 5924240 -212112918 - L1MB8 LINE L1 0 6178 6127 867 199 25 0 chr3 5924243 5924439 -212112719 + LTR37A LTR ERV1 218 418 -8 1723 217 52 46 chr3 5924703 5925205 -212111953 - MLT1D LTR MaLR 0 505 1 1890 150 47 26 chr3 5925949 5926290 -212110868 - MER7A DNA MER2_type 0 346 1 2292 62 0 10 chr3 5927465 5927814 -212109344 - AluY SINE Alu 0 311 1 340 272 99 74 chr3 5928188 5928471 -212108687 - L1ME4a LINE L1 -221 5900 5611 1679 168 30 16 chr3 5928800 5928926 -212108232 + AluJb SINE Alu 1 124 -188 423 0 0 0 chr3 5928926 5928973 -212108185 + (CA)n Simple_repeat Simple_repeat 2 48 0 1679 168 30 16 chr3 5928973 5929150 -212108008 + AluJb SINE Alu 124 308 -4 1551 174 87 0 chr3 5929739 5930004 -212107154 + AluSx SINE Alu 1 288 -24 1319 239 47 60 chr3 5930527 5930593 -212106565 - MLT1C LTR MaLR 0 467 402 1862 174 0 3 chr3 5930593 5930897 -212106261 + AluJb SINE Alu 1 303 -9 1319 239 47 60 chr3 5930897 5931298 -212105860 - MLT1C LTR MaLR -65 402 6 2007 149 10 0 chr3 5931323 5931632 -212105526 - AluSq SINE Alu -1 312 1 249 244 58 35 chr3 5931748 5931834 -212105324 + MER103 DNA DNA 69 156 -10 389 232 125 9 chr3 5932278 5932390 -212104768 - MIR SINE MIR -64 198 74 285 326 0 21 chr3 5933212 5933307 -212103851 + L2 LINE L2 3219 3311 -2 271 231 66 55 chr3 5933512 5933603 -212103555 - L2 LINE L2 -1 3312 3221 23 0 0 0 chr3 5934150 5934173 -212102985 + AT_rich Low_complexity Low_complexity 1 23 0 2352 224 20 27 chr3 5934663 5935225 -212101933 - MER74A LTR ERVL 0 558 1 501 147 151 129 chr3 5935267 5935492 -212101666 + MER106A DNA MER1_type 1 230 -6 237 208 57 0 chr3 5936028 5936081 -212101077 + U6 snRNA snRNA 24 79 -28 408 254 16 8 chr3 5936136 5936262 -212100896 + L1ME2 LINE L1 6038 6164 0 512 310 36 39 chr3 5936507 5936748 -212100410 - MIR SINE MIR 0 262 23 213 341 32 32 chr3 5937657 5937780 -212099378 - L2 LINE L2 -217 3055 2933 1900 250 120 56 chr3 5938173 5938921 -212098237 - MER21B LTR ERV1 -48 815 20 320 235 20 71 chr3 5938922 5939020 -212098138 - MER21B LTR ERV1 -759 104 12 273 373 55 39 chr3 5939673 5939705 -212097453 + MIR3 SINE MIR 1 31 -177 1464 163 22 117 chr3 5939705 5940117 -212097041 + MLT1A2 LTR MaLR 2 374 0 273 373 55 39 chr3 5940117 5940236 -212096922 + MIR3 SINE MIR 31 155 -53 382 237 21 0 chr3 5940284 5940377 -212096781 - MER117 DNA MER1_type -35 162 68 284 0 28 0 chr3 5940994 5941030 -212096128 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 394 267 298 0 chr3 5942286 5942417 -212094741 + MER45A DNA AcHobo 1 170 -8 530 253 222 0 chr3 5944204 5944398 -212092760 - MIR SINE MIR -21 241 5 196 231 0 19 chr3 5944426 5944478 -212092680 - MIR SINE MIR -32 230 180 273 354 0 0 chr3 5944593 5944675 -212092483 + Charlie1 DNA MER1_type 1 82 -2679 27 29 0 0 chr3 5945140 5945174 -212091984 + AT_rich Low_complexity Low_complexity 1 34 0 1925 262 59 23 chr3 5945806 5946378 -212090780 + MLT1E LTR MaLR 1 593 0 26 30 0 0 chr3 5946676 5946709 -212090449 + AT_rich Low_complexity Low_complexity 1 33 0 211 374 84 7 chr3 5949195 5949350 -212087808 - MIR SINE MIR -50 212 46 228 213 0 0 chr3 5949832 5949893 -212087265 + CT-rich Low_complexity Low_complexity 2 62 0 388 266 132 60 chr3 5949942 5950306 -212086852 + L1MCc LINE L1 23 412 -6011 1630 264 89 29 chr3 5950556 5950738 -212086420 + L1MCc LINE L1 828 998 -5632 2120 184 26 26 chr3 5950738 5951162 -212085996 + MSTB LTR MaLR 1 424 -2 1630 264 89 29 chr3 5951162 5951825 -212085333 + L1MCc LINE L1 998 1736 -4894 2350 106 0 0 chr3 5951872 5952174 -212084984 + AluSx SINE Alu 1 302 -10 789 273 28 22 chr3 5952228 5952660 -212084498 + L1MCc LINE L1 2138 2478 -4463 667 276 98 33 chr3 5952651 5953251 -212083907 - L1MC4 LINE L1 -127 7681 7186 * 1685 118 33 0 chr3 5953654 5953899 -212083259 - AluSp SINE Alu -22 291 39 479 325 79 95 chr3 5953920 5954655 -212082503 + L2 LINE L2 2218 2940 -374 1580 176 48 0 chr3 5954828 5955118 -212082040 - AluJb SINE Alu -8 304 1 249 316 89 0 chr3 5955220 5955299 -212081859 + L2 LINE L2 3150 3235 -37 229 257 86 29 chr3 5955301 5955371 -212081787 - L2 LINE L2 -8 3305 3232 419 321 25 6 chr3 5956107 5956266 -212080892 - MIR3 SINE MIR -2 206 45 619 256 45 25 chr3 5956522 5956721 -212080437 + MIR SINE MIR 46 248 -14 351 0 0 0 chr3 5957413 5957452 -212079706 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 274 27 0 chr3 5957623 5957696 -212079462 + MIR SINE MIR 182 256 -6 1728 176 3 0 chr3 5958166 5958455 -212078703 + AluJo SINE Alu 1 290 -22 634 209 130 6 chr3 5958465 5958642 -212078516 + MER20 DNA MER1_type 1 199 -20 434 341 74 9 chr3 5959093 5959310 -212077848 - MIR SINE MIR -14 248 18 2278 113 0 7 chr3 5959809 5960119 -212077039 - AluSx SINE Alu -3 309 2 206 310 43 70 chr3 5960867 5961054 -212076104 + L2 LINE L2 2726 2907 -407 300 254 24 79 chr3 5961338 5961464 -212075694 + MIR SINE MIR 45 163 -99 560 284 126 48 chr3 5961574 5961845 -212075313 + LTR16C LTR ERVL 200 491 0 1976 134 16 3 chr3 5961865 5962172 -212074986 + AluSx SINE Alu 1 311 -1 521 237 44 7 chr3 5962298 5962433 -212074725 + MIR SINE MIR 12 151 -111 217 221 118 0 chr3 5962827 5962895 -212074263 - MIR SINE MIR -140 122 47 207 0 0 0 chr3 5962899 5962922 -212074236 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2975 83 0 2 chr3 5963008 5963405 -212073753 - L1PA8 LINE L1 0 6172 5777 291 290 43 73 chr3 5963706 5963845 -212073313 + MIR SINE MIR 45 180 -28 414 321 81 43 chr3 5964255 5964464 -212072694 + MIR SINE MIR 46 262 0 735 288 113 14 chr3 5965574 5966092 -212071066 - MLT2E LTR ERVL -2 626 25 1597 169 4 22 chr3 5966357 5966635 -212070523 + AluJo SINE Alu 2 274 -38 300 27 0 0 chr3 5968226 5968266 -212068892 + (TG)n Simple_repeat Simple_repeat 1 77 0 300 27 0 0 chr3 5968266 5968303 -212068855 + (TG)n Simple_repeat Simple_repeat 2 38 0 658 201 201 73 chr3 5968520 5968795 -212068363 + MER63D DNA MER1_type 47 376 -685 212 0 0 35 chr3 5968795 5968824 -212068334 + (TA)n Simple_repeat Simple_repeat 1 28 0 658 201 201 73 chr3 5968824 5968891 -212068267 + MER63D DNA MER1_type 376 433 -628 1647 198 68 3 chr3 5968910 5969278 -212067880 + MER63D DNA MER1_type 666 1057 -4 22 35 0 0 chr3 5969382 5969411 -212067747 + AT_rich Low_complexity Low_complexity 1 29 0 194 258 91 45 chr3 5969432 5969498 -212067660 - MER5B DNA MER1_type -2 176 108 1073 242 81 36 chr3 5969503 5969704 -212067454 + L1ME3A LINE L1 5734 5924 -246 216 0 0 0 chr3 5969704 5969728 -212067430 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 5969728 5969944 -212067214 + L1ME3A LINE L1 5924 6170 0 2150 115 0 0 chr3 5969954 5970233 -212066925 + AluSg SINE Alu 1 279 -31 444 237 21 0 chr3 5970277 5970374 -212066784 + MER5B DNA MER1_type 77 175 -3 24 77 0 0 chr3 5970417 5970469 -212066689 + AT_rich Low_complexity Low_complexity 1 52 0 1234 160 20 116 chr3 5970508 5970802 -212066356 + Tigger7 DNA MER2_type 2 267 -2220 412 264 0 0 chr3 5970800 5970887 -212066271 + Tigger7 DNA MER2_type 2389 2475 -12 * 296 250 181 0 chr3 5971020 5971092 -212066066 + FLAM_A SINE Alu 33 117 -16 198 167 0 0 chr3 5971102 5971138 -212066020 + (TG)n Simple_repeat Simple_repeat 1 36 0 322 218 33 0 chr3 5971138 5971229 -212065929 + L1MCa LINE L1 1996 6983 -1339 281 188 0 0 chr3 5971259 5971323 -212065835 - L1MC4 LINE L1 -1339 6703 6640 813 217 0 30 chr3 5971329 5971495 -212065663 + FRAM SINE Alu 1 154 -22 6715 105 13 35 chr3 5971522 5972556 -212064602 + L1MA2 LINE L1 5137 6192 -112 1946 127 4 0 chr3 5972556 5972823 -212064335 + AluSx SINE Alu 1 268 -44 392 36 0 18 chr3 5972825 5972880 -212064278 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6715 105 13 35 chr3 5972880 5973036 -212064122 + L1MA2 LINE L1 6193 6304 0 461 176 22 22 chr3 5973040 5973057 -212064101 + GA-rich Low_complexity Low_complexity 2 18 -119 1682 170 26 13 chr3 5973057 5973363 -212063795 + AluJo SINE Alu 1 310 -2 461 176 22 22 chr3 5973363 5973481 -212063677 + GA-rich Low_complexity Low_complexity 17 137 0 23 0 0 0 chr3 5974570 5974593 -212062565 + AT_rich Low_complexity Low_complexity 1 23 0 825 330 41 39 chr3 5974741 5975280 -212061878 - L2 LINE L2 -2 3311 2772 2350 96 3 0 chr3 5975330 5975642 -212061516 + AluSp SINE Alu 1 313 0 23 54 0 0 chr3 5977327 5977364 -212059794 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 5977607 5977631 -212059527 + AT_rich Low_complexity Low_complexity 1 24 0 1944 134 3 3 chr3 5977636 5977962 -212059196 + AluSx SINE Alu 3 328 0 261 277 69 54 chr3 5978361 5978491 -212058667 + L2 LINE L2 3140 3271 -1 264 242 200 11 chr3 5978501 5978596 -212058562 - L2 LINE L2 -1 3312 3200 271 234 404 0 chr3 5978797 5978891 -212058267 - L2 LINE L2 0 3272 3141 1662 220 77 46 chr3 5978897 5979379 -212057779 - MLT1D LTR MaLR -6 499 3 1006 289 86 42 chr3 5980903 5981429 -212055729 + MLT1H LTR MaLR 1 549 0 21 36 0 0 chr3 5981479 5981507 -212055651 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 5981615 5981638 -212055520 + AT_rich Low_complexity Low_complexity 1 23 0 29 84 0 0 chr3 5981686 5981757 -212055401 + AT_rich Low_complexity Low_complexity 1 71 0 25 31 0 0 chr3 5982219 5982251 -212054907 + AT_rich Low_complexity Low_complexity 1 32 0 282 287 30 20 chr3 5982745 5982846 -212054312 + MLT1H LTR MaLR 1 102 -447 25 0 0 0 chr3 5982972 5982997 -212054161 + AT_rich Low_complexity Low_complexity 1 25 0 236 222 0 16 chr3 5983279 5983342 -212053816 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 334 377 117 20 chr3 5983677 5984078 -212053080 - L2 LINE L2 -339 2975 2536 199 346 71 50 chr3 5984071 5984253 -212052905 + L2 LINE L2 2628 2813 -501 * 283 298 58 8 chr3 5984423 5984544 -212052614 - MER94 DNA DNA 0 134 8 292 380 29 37 chr3 5984591 5984836 -212052322 + MLT1K LTR MaLR 40 282 -306 1246 314 38 7 chr3 5984899 5985320 -212051838 + MER74C LTR ERVL 10 443 -17 2023 141 3 6 chr3 5985465 5985777 -212051381 - AluSq SINE Alu 0 313 3 496 325 10 25 chr3 5986026 5986229 -212050929 + MIR3 SINE MIR 9 208 0 303 249 44 88 chr3 5986835 5987040 -212050118 + MER46C DNA MER2_type 1 196 -142 266 245 0 43 chr3 5987075 5987169 -212049989 - L1MC4 LINE L1 -1339 6703 6614 1055 220 5 5 chr3 5987264 5987464 -212049694 + MER58A DNA MER1_type 1 200 -24 337 321 9 0 chr3 5989497 5989609 -212047549 - MIR3 SINE MIR -1 207 95 427 300 15 0 chr3 5989901 5990031 -212047127 - MER110 LTR ERV1 0 491 360 2573 149 9 41 chr3 5990045 5990488 -212046670 + MER57B LTR ERV1 1 429 -5 952 251 127 0 chr3 5990495 5990762 -212046396 - MER110 LTR ERV1 -145 346 46 505 267 72 59 chr3 5990816 5991037 -212046121 - MER58A DNA MER1_type 0 224 1 226 210 32 0 chr3 5991195 5991257 -212045901 + (TA)n Simple_repeat Simple_repeat 1 64 0 1762 281 8 58 chr3 5991588 5992223 -212044935 + L3 LINE CR1 795 1397 -180 495 297 24 38 chr3 5992223 5992432 -212044726 + MIR SINE MIR 4 209 -53 267 360 93 0 chr3 5992448 5992587 -212044571 + L3 LINE CR1 1425 1576 -1 391 259 32 138 chr3 5992662 5992909 -212044249 + MER102a DNA MER1_type 92 312 -18 567 306 27 32 chr3 5993093 5993312 -212043846 - MIR SINE MIR -35 227 10 376 277 44 25 chr3 5993504 5993663 -212043495 + MER103 DNA DNA 5 166 0 199 336 64 0 chr3 5993764 5993874 -212043284 + MIR SINE MIR 53 169 -93 2078 105 3 3 chr3 5994077 5994363 -212042795 - AluSx SINE Alu -26 286 1 238 164 16 16 chr3 5994435 5994496 -212042662 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 304 0 87 0 chr3 5995357 5995403 -212041755 + A-rich Low_complexity Low_complexity 2 51 0 182 379 11 0 chr3 5995905 5995992 -212041166 - MIR SINE MIR -155 107 20 732 316 25 8 chr3 5996483 5996720 -212040438 + MIR SINE MIR 22 262 0 614 188 0 0 chr3 5997380 5997515 -212039643 - AluJo SINE Alu 0 318 184 614 217 0 0 chr3 5997515 5997630 -212039528 - AluJo SINE Alu -187 115 1 1302 258 58 8 chr3 5999337 5999713 -212037445 - LTR16C LTR ERVL 0 491 97 326 297 84 19 chr3 6000468 6000623 -212036535 - MIR SINE MIR -74 188 24 236 333 24 0 chr3 6000685 6000769 -212036389 + MER81 DNA DNA 7 92 -22 183 304 10 69 chr3 6001528 6001630 -212035528 + MIR3 SINE MIR 74 169 -39 261 220 57 14 chr3 6003161 6003302 -212033856 + (TA)n Simple_repeat Simple_repeat 1 147 0 375 267 74 93 chr3 6003582 6003852 -212033306 - L2 LINE L2 -6 3307 3043 22 35 0 0 chr3 6003951 6003980 -212033178 + AT_rich Low_complexity Low_complexity 1 29 0 242 298 0 0 chr3 6005271 6005328 -212031830 - L2 LINE L2 -27 3286 3230 1070 146 5 21 chr3 6005578 6005770 -212031388 - L1PB2 LINE L1 -7 6144 5956 766 236 34 39 chr3 6005984 6006192 -212030966 - MER20 DNA MER1_type 0 219 13 3141 228 28 66 chr3 6006193 6007250 -212029908 + L1ME2 LINE L1 3763 4779 -1367 2589 216 31 19 chr3 6007217 6007832 -212029326 + L1MB5 LINE L1 5545 6166 -8 * 378 159 35 7 chr3 6007867 6008012 -212029146 + CT-rich Low_complexity Low_complexity 1 149 0 21 0 0 0 chr3 6008083 6008104 -212029054 + AT_rich Low_complexity Low_complexity 1 21 0 757 301 33 5 chr3 6008161 6008374 -212028784 - MIR SINE MIR -42 220 2 2652 245 126 13 chr3 6009376 6010544 -212026614 + L1ME2 LINE L1 4854 6155 -9 279 0 0 0 chr3 6010916 6010947 -212026211 + (CA)n Simple_repeat Simple_repeat 1 31 0 192 111 0 0 chr3 6011376 6011412 -212025746 + (T)n Simple_repeat Simple_repeat 1 36 0 601 331 79 64 chr3 6012215 6012608 -212024550 - LTR16C LTR ERVL -4 487 89 303 244 74 67 chr3 6012711 6012846 -212024312 - MIR SINE MIR -116 146 11 427 265 128 95 chr3 6013054 6013256 -212023902 - HAL1 LINE L1 -3 2504 2310 2075 128 0 19 chr3 6013256 6013568 -212023590 + AluSx SINE Alu 1 306 -6 427 265 128 95 chr3 6013568 6014229 -212022929 - HAL1 LINE L1 -197 2310 1612 1995 123 0 14 chr3 6014487 6014799 -212022359 - AluSg SINE Alu 0 308 1 313 321 142 37 chr3 6015247 6015409 -212021749 - HAL1 LINE L1 -2101 406 228 197 319 132 42 chr3 6015671 6015815 -212021343 + L2 LINE L2 3116 3272 0 251 325 36 0 chr3 6017198 6017281 -212019877 + L2 LINE L2 3184 3269 -3 2256 204 60 30 chr3 6017503 6018041 -212019117 + MLT2B3 LTR ERVL 1 554 0 1718 237 92 13 chr3 6018181 6018716 -212018442 - MER119 DNA MER1_type 0 583 7 572 328 58 17 chr3 6018725 6018966 -212018192 + MIR SINE MIR 12 262 0 672 252 26 52 chr3 6019139 6019369 -212017789 - MIR SINE MIR -26 236 13 21 57 0 0 chr3 6020353 6020388 -212016770 + AT_rich Low_complexity Low_complexity 1 35 0 1763 205 3 6 chr3 6021697 6022058 -212015100 + MER46B DNA MER2_type 1 235 -1 21 36 0 0 chr3 6022160 6022188 -212014970 + AT_rich Low_complexity Low_complexity 1 28 0 926 208 63 0 chr3 6023067 6023274 -212013884 + MLT2B1 LTR ERVL 1 220 -300 230 162 0 0 chr3 6023311 6023348 -212013810 + MLT2C2 LTR ERVL 426 462 -2 222 37 0 0 chr3 6023719 6023746 -212013412 + (TG)n Simple_repeat Simple_repeat 2 28 0 208 338 27 0 chr3 6024530 6024604 -212012554 - L2 LINE L2 -3 3269 3194 723 298 88 51 chr3 6024990 6025634 -212011524 + L1ME4a LINE L1 5315 5982 -139 226 209 15 15 chr3 6025662 6025729 -212011429 + L1ME4a LINE L1 6052 6118 -3 404 371 9 0 chr3 6026225 6026341 -212010817 + L2 LINE L2 3189 3305 -8 22 56 0 0 chr3 6026347 6026383 -212010775 + AT_rich Low_complexity Low_complexity 1 36 0 1305 62 6 0 chr3 6027221 6027397 -212009761 - AluY SINE Alu -3 308 132 2343 59 3 0 chr3 6027520 6027823 -212009335 - AluY SINE Alu -7 304 1 2257 48 7 0 chr3 6027907 6028199 -212008959 - AluY SINE Alu -16 295 2 234 350 46 53 chr3 6029479 6029762 -212007396 + L1MEd LINE L1 496 776 -5343 25 75 0 0 chr3 6029886 6029939 -212007219 + AT_rich Low_complexity Low_complexity 1 53 0 254 228 60 75 chr3 6030023 6030247 -212006911 + L1MEd LINE L1 1125 1396 -4894 28 0 0 0 chr3 6031166 6031194 -212005964 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 6031194 6031480 -212005678 - AluY SINE Alu -24 287 2 28 0 0 0 chr3 6031572 6031600 -212005558 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 6032154 6032182 -212004976 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 6032182 6032468 -212004690 - AluY SINE Alu -24 287 2 28 0 0 0 chr3 6032560 6032588 -212004570 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 6032820 6032849 -212004309 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr3 6032848 6032882 -212004276 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr3 6033373 6033396 -212003762 + AT_rich Low_complexity Low_complexity 1 23 0 1269 27 0 0 chr3 6033396 6033545 -212003613 - L1PA3 LINE L1 -5 6150 6002 635 331 20 36 chr3 6033852 6034100 -212003058 - MIR SINE MIR -3 259 16 183 129 0 0 chr3 6034235 6034266 -212002892 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 826 285 92 64 chr3 6035134 6035353 -212001805 + HAL1b LINE L1 112 323 -1025 210 91 0 0 chr3 6035353 6035386 -212001772 + (CA)n Simple_repeat Simple_repeat 2 34 0 826 285 92 64 chr3 6035386 6036141 -212001017 + HAL1b LINE L1 323 1114 -234 2127 90 0 4 chr3 6036142 6036450 -212000708 - AluSc SINE Alu 0 307 1 29 28 0 0 chr3 6036517 6036553 -212000605 + AT_rich Low_complexity Low_complexity 1 36 0 185 170 21 43 chr3 6037033 6037080 -212000078 + MER5C DNA MER1_type 279 324 0 24 0 0 0 chr3 6039933 6039957 -211997201 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 6039979 6040007 -211997151 + AT_rich Low_complexity Low_complexity 1 28 0 1956 327 64 1 chr3 6040109 6040856 -211996302 + L2 LINE L2 1331 2124 -1190 995 293 66 7 chr3 6040884 6041307 -211995851 + L1MC4 LINE L1 4440 4887 -1259 1298 239 70 55 chr3 6041338 6041527 -211995631 + L1MC4 LINE L1 4846 5031 -1135 1915 76 29 11 chr3 6041527 6041803 -211995355 + L1PA11 LINE L1 5894 6174 0 1298 239 70 55 chr3 6041803 6042168 -211994990 + L1MC4 LINE L1 5031 5389 -777 1484 201 3 3 chr3 6042168 6042452 -211994706 + AluJb SINE Alu 3 286 -26 203 0 0 36 chr3 6042462 6042490 -211994668 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 1298 239 70 55 chr3 6042490 6043093 -211994065 + L1MC4 LINE L1 5397 6161 -5 568 310 44 31 chr3 6043341 6043570 -211993588 - MIR SINE MIR -2 260 29 267 79 0 0 chr3 6043755 6043793 -211993365 + (CA)n Simple_repeat Simple_repeat 2 39 0 252 0 0 0 chr3 6044273 6044301 -211992857 + (T)n Simple_repeat Simple_repeat 1 28 0 311 238 0 0 chr3 6044443 6044506 -211992652 + MER69 DNA AcHobo 2464 2526 0 327 288 220 11 chr3 6044847 6045038 -211992120 - MIR SINE MIR -19 243 13 680 271 81 44 chr3 6046375 6046670 -211990488 + MLT1H LTR MaLR 1 306 -243 310 277 0 80 chr3 6046704 6046841 -211990317 + MLT1H LTR MaLR 424 549 0 225 284 47 101 chr3 6046866 6047014 -211990144 - LTR16C LTR ERVL 0 491 352 603 145 8 63 chr3 6048428 6048933 -211988225 + (CATATA)n Simple_repeat Simple_repeat 1 477 0 266 125 21 0 chr3 6048935 6048983 -211988175 + (CA)n Simple_repeat Simple_repeat 2 50 0 897 328 77 32 chr3 6048991 6049665 -211987493 - HERVL LTR ERVL -1028 4457 3735 1482 338 58 38 chr3 6049790 6050990 -211986168 - HERVL LTR ERVL -1975 3021 1799 25 0 0 0 chr3 6051605 6051630 -211985528 + AT_rich Low_complexity Low_complexity 1 25 0 574 192 83 0 chr3 6051784 6051904 -211985254 + FLAM_A SINE Alu 4 133 0 347 283 75 12 chr3 6052862 6053035 -211984123 - MER113 DNA MER1_type? -304 217 34 3523 142 39 32 chr3 6053598 6054288 -211982870 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 6054288 6054310 -211982848 + AT_rich Low_complexity Low_complexity 1 22 0 234 182 55 0 chr3 6054633 6054688 -211982470 + L2 LINE L2 3250 3307 -6 435 335 182 23 chr3 6054746 6055185 -211981973 + L2 LINE L2 2804 3312 -1 411 302 63 6 chr3 6055335 6055494 -211981664 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 6055901 6055988 -211981170 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 302 291 60 46 chr3 6056050 6056201 -211980957 - MIR SINE MIR -105 157 5 513 361 47 29 chr3 6057308 6057649 -211979509 + LTR16C LTR ERVL 137 483 -8 314 286 24 0 chr3 6057680 6057764 -211979394 - L2 LINE L2 -6 3307 3222 2581 103 16 0 chr3 6057905 6058274 -211978884 - THE1C LTR MaLR 0 375 1 190 352 114 0 chr3 6058765 6058853 -211978305 + L3b LINE CR1 1459 1556 -27 23 33 0 0 chr3 6059040 6059070 -211978088 + AT_rich Low_complexity Low_complexity 1 30 0 376 268 192 27 chr3 6059212 6059436 -211977722 + MIR SINE MIR 2 262 0 756 211 155 0 chr3 6059472 6059666 -211977492 + MER58A DNA MER1_type 1 224 0 374 345 84 20 chr3 6061341 6061831 -211975327 + L1ME LINE L1 5304 5824 -297 716 313 175 18 chr3 6061848 6062305 -211974853 + L2 LINE L2 2102 2630 -684 1461 213 0 11 chr3 6062396 6062682 -211974476 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 6062687 6062717 -211974441 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 852 195 6 18 chr3 6062717 6062886 -211974272 + FRAM SINE Alu 1 162 -14 261 83 0 0 chr3 6063109 6063145 -211974013 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 954 267 136 40 chr3 6063243 6063693 -211973465 + MLT1H LTR MaLR 3 495 -54 299 359 31 8 chr3 6063927 6064055 -211973103 + L2 LINE L2 3142 3272 0 292 244 100 91 chr3 6064148 6064378 -211972780 + L1ME3A LINE L1 5785 6016 -154 21 36 0 0 chr3 6064509 6064537 -211972621 + AT_rich Low_complexity Low_complexity 1 28 0 1354 176 114 29 chr3 6064701 6064974 -211972184 + MER1B DNA MER1_type 1 296 -43 2037 331 63 38 chr3 6066884 6068107 -211969051 - L2 LINE L2 -2050 1264 11 241 268 0 18 chr3 6068326 6068382 -211968776 + MIR SINE MIR 47 101 -161 23 0 0 0 chr3 6068427 6068450 -211968708 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 6068592 6068648 -211968510 + A-rich Low_complexity Low_complexity 6 62 0 213 190 177 76 chr3 6069205 6069284 -211967874 + L2 LINE L2 3227 3313 0 555 229 179 0 chr3 6069480 6069620 -211967538 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 6069625 6069688 -211967470 + MIR SINE MIR 13 76 -186 362 89 0 0 chr3 6069688 6069744 -211967414 - AluSp/q SINE Alu -3 300 245 1934 115 0 0 chr3 6069744 6070004 -211967154 - AluSq SINE Alu -33 280 21 427 262 40 24 chr3 6070004 6070130 -211967028 + MIR SINE MIR 61 188 -74 293 336 107 22 chr3 6071133 6071374 -211965784 + L1ME3A LINE L1 4724 4943 -1203 186 43 0 0 chr3 6071374 6071397 -211965761 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 293 336 107 22 chr3 6071397 6071613 -211965545 + L1ME3A LINE L1 4943 5220 -926 1500 265 63 50 chr3 6071660 6072426 -211964732 + L1ME3A LINE L1 5288 6063 -107 427 300 202 5 chr3 6073753 6074120 -211963038 - HAL1 LINE L1 -696 1811 1373 994 205 71 26 chr3 6074531 6074799 -211962359 - MER21B LTR ERV1 -114 749 470 210 143 0 0 chr3 6075373 6075408 -211961750 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr3 6076238 6076267 -211960891 + AT_rich Low_complexity Low_complexity 1 29 0 290 292 28 0 chr3 6076563 6076635 -211960523 - L2 LINE L2 -3 3269 3196 575 260 201 43 chr3 6076640 6077032 -211960126 - LTR16A1 LTR ERVL -3 454 1 301 281 114 9 chr3 6077639 6077753 -211959405 + L2 LINE L2 3147 3272 0 282 116 0 0 chr3 6077880 6077923 -211959235 + (TA)n Simple_repeat Simple_repeat 2 44 0 2224 74 0 7 chr3 6079639 6079957 -211957201 + AluY SINE Alu 1 316 0 1671 219 115 22 chr3 6080103 6080565 -211956593 - MLT1D LTR MaLR 0 505 1 24 0 0 0 chr3 6080675 6080699 -211956459 + AT_rich Low_complexity Low_complexity 1 24 0 284 267 76 29 chr3 6080974 6081079 -211956079 - MIR SINE MIR -74 188 79 387 0 0 0 chr3 6081139 6081182 -211955976 + (A)n Simple_repeat Simple_repeat 1 43 0 29 28 0 0 chr3 6082159 6082195 -211954963 + AT_rich Low_complexity Low_complexity 1 36 0 377 181 123 48 chr3 6082763 6082924 -211954234 - MER20 DNA MER1_type 0 219 2 245 278 133 0 chr3 6084473 6084563 -211952595 - MIR SINE MIR -51 211 110 6178 95 23 7 chr3 6084683 6086313 -211950845 - L1PA13 LINE L1 -1 6162 4516 299 332 45 10 chr3 6086414 6086616 -211950542 + L1MC4a LINE L1 5677 5885 -1923 1528 211 13 3 chr3 6086623 6086927 -211950231 + 7SLRNA srpRNA srpRNA 1 307 -13 28 61 0 0 chr3 6087119 6087168 -211949990 + AT_rich Low_complexity Low_complexity 1 49 0 285 264 72 64 chr3 6087944 6088069 -211949089 + MLT1K LTR MaLR 282 407 -181 218 105 26 0 chr3 6088201 6088239 -211948919 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 28691 120 76 9 chr3 6088853 6094611 -211942547 + L1PA7 LINE L1 12 6152 -2 21 0 0 0 chr3 6096254 6096275 -211940883 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 6096554 6096589 -211940569 + AT_rich Low_complexity Low_complexity 1 35 0 194 324 6 6 chr3 6098540 6098629 -211938529 + MIR SINE MIR 19 108 -100 219 36 0 0 chr3 6098843 6098871 -211938287 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1515 163 0 105 chr3 6099037 6099369 -211937789 + AluJb SINE Alu 1 297 -15 339 303 328 5 chr3 6099850 6100045 -211937113 - MIR SINE MIR -3 259 2 278 340 21 0 chr3 6100158 6100252 -211936906 - MIR SINE MIR -68 140 45 239 319 11 32 chr3 6100754 6100848 -211936310 + MLT1K LTR MaLR 482 573 -15 21 36 0 0 chr3 6102304 6102332 -211934826 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 6103397 6103422 -211933736 + AT_rich Low_complexity Low_complexity 1 25 0 2099 270 50 54 chr3 6103524 6104719 -211932439 - HAL1 LINE L1 -148 2359 1169 18728 30 0 0 chr3 6154749 6157022 -211880136 - L1P LINE L1 -840 5306 3034 246 266 31 0 chr3 6158619 6158683 -211878475 - MLT2D LTR ERVL -118 296 231 758 201 85 0 chr3 6162325 6162489 -211874669 - MER5B DNA MER1_type 0 178 1 243 200 50 62 chr3 6162506 6162586 -211874572 - Charlie8 DNA MER1_type 0 2417 2339 359 307 94 40 chr3 6163044 6163246 -211873912 + MIR SINE MIR 49 261 -1 523 233 39 0 chr3 6163648 6163777 -211873381 + MLT1C LTR MaLR 34 167 -300 7086 39 8 3 chr3 6163783 6164832 -211872326 + L1PA4 LINE L1 5139 6155 0 832 241 84 45 chr3 6164832 6165118 -211872040 + MLT1C LTR MaLR 171 467 0 311 183 14 0 chr3 6165642 6165713 -211871445 - L1MDa LINE L1 -4351 2189 2118 2174 203 51 75 chr3 6165817 6166640 -211870518 - L1MDa LINE L1 -4441 2099 1297 2617 255 50 22 chr3 6166655 6167329 -211869829 - L1MDa LINE L1 -5831 709 17 6533 235 32 17 chr3 6167878 6168053 -211869105 - L1PA12 LINE L1 -2789 4795 4624 2754 22 0 0 chr3 6168053 6168364 -211868794 - AluYa5 SINE Alu 0 311 1 6533 235 32 17 chr3 6168364 6171012 -211866146 - L1PA12 LINE L1 -2960 4624 1924 661 303 31 12 chr3 6171024 6171278 -211865880 - L1PA12 LINE L1 -7322 259 1 1634 178 3 28 chr3 6171835 6172121 -211865037 - AluJb SINE Alu -31 281 3 1869 179 42 8 chr3 6172450 6172803 -211864355 - MLT1A1 LTR MaLR 0 365 1 1870 142 64 0 chr3 6173009 6173290 -211863868 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 6173439 6173470 -211863688 + AT_rich Low_complexity Low_complexity 1 31 0 228 167 0 0 chr3 6173503 6173551 -211863607 + LTR66 LTR ERVL 392 439 -171 264 122 0 0 chr3 6173553 6173594 -211863564 + (TA)n Simple_repeat Simple_repeat 1 41 0 237 164 164 0 chr3 6173596 6173657 -211863501 + MIR SINE MIR 70 140 -122 230 204 0 0 chr3 6173684 6173728 -211863430 + Tigger2 DNA MER2_type 26 69 -2649 * 2416 148 60 7 chr3 6173715 6174135 -211863023 + Tigger2 DNA MER2_type 2271 2712 -6 226 310 0 0 chr3 6174146 6174204 -211862954 + MIR SINE MIR 156 213 -49 2399 67 3 3 chr3 6174387 6174685 -211862473 - AluY SINE Alu -13 298 1 186 43 0 0 chr3 6174802 6174825 -211862333 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 183 250 0 0 chr3 6175243 6175311 -211861847 + G-rich Low_complexity Low_complexity 1 68 0 338 260 42 21 chr3 6175493 6175589 -211861569 + MLT1L LTR MaLR 297 394 -221 2430 200 34 20 chr3 6175746 6176301 -211860857 - L1MB3 LINE L1 -6 6177 5615 207 419 26 21 chr3 6176644 6176835 -211860323 + L2 LINE L2 2869 3060 -212 1343 293 124 15 chr3 6177005 6177673 -211859485 + L2 LINE L2 1945 2685 -629 777 118 0 0 chr3 6177719 6177829 -211859329 + MSTB1 LTR MaLR 1 110 -322 942 275 83 73 chr3 6177856 6178381 -211858777 + L2 LINE L2 2777 3311 -2 265 333 61 10 chr3 6178378 6178477 -211858681 + L2 LINE L2 3169 3272 0 * 282 287 33 16 chr3 6179076 6179198 -211857960 + CT-rich Low_complexity Low_complexity 3 126 0 279 343 26 82 chr3 6180285 6180553 -211856605 + L3 LINE CR1 1066 1318 -259 336 317 83 22 chr3 6180553 6180733 -211856425 - L2 LINE L2 -5 3308 3118 303 311 120 70 chr3 6180982 6181423 -211855735 - L2 LINE L2 -517 2797 2335 186 301 126 10 chr3 6181561 6181664 -211855494 + L3 LINE CR1 585 699 -878 192 77 0 0 chr3 6182588 6182614 -211854544 + (TG)n Simple_repeat Simple_repeat 1 26 0 231 36 0 0 chr3 6182640 6182668 -211854490 + (TG)n Simple_repeat Simple_repeat 1 28 0 3157 82 9 24 chr3 6182744 6183195 -211853963 - MLT2A1 LTR ERVL 0 444 1 263 297 0 0 chr3 6183640 6183704 -211853454 - MIR SINE MIR -19 243 180 733 277 0 21 chr3 6184198 6184386 -211852772 - MIR SINE MIR -77 185 2 299 206 0 0 chr3 6184864 6184927 -211852231 - MLT1E2 LTR MaLR -16 610 548 435 239 9 18 chr3 6185073 6185186 -211851972 - MLT1E3 LTR MaLR -459 165 54 228 342 0 26 chr3 6187776 6187852 -211849306 + MIR SINE MIR 20 93 -115 458 296 23 8 chr3 6187952 6188084 -211849074 + MIR SINE MIR 127 260 -2 195 368 0 0 chr3 6188307 6188375 -211848783 + L2 LINE L2 3205 3272 0 418 321 93 19 chr3 6188629 6188791 -211848367 + MIR3 SINE MIR 20 193 -15 323 325 84 19 chr3 6188984 6189138 -211848020 + MIR SINE MIR 22 185 -77 185 339 36 36 chr3 6189328 6189440 -211847718 - L2 LINE L2 -3 3310 3199 28 61 0 0 chr3 6189560 6189609 -211847549 + AT_rich Low_complexity Low_complexity 1 49 0 829 307 107 58 chr3 6189744 6190642 -211846516 - L2 LINE L2 0 3313 2375 672 224 153 10 chr3 6190652 6190848 -211846310 - MER58A DNA MER1_type 0 224 1 1069 324 166 14 chr3 6190852 6191575 -211845583 - L2 LINE L2 -947 2367 1535 285 277 0 32 chr3 6191712 6191806 -211845352 - MER63 DNA MER1_type -86 750 34 632 157 0 17 chr3 6191911 6192083 -211845075 + G-rich Low_complexity Low_complexity 1 169 0 1881 155 0 7 chr3 6192416 6192707 -211844451 - AluSg SINE Alu -19 291 3 26 0 0 0 chr3 6193384 6193410 -211843748 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 6194070 6194093 -211843065 + AT_rich Low_complexity Low_complexity 1 23 0 383 327 107 58 chr3 6194538 6195125 -211842033 - L2 LINE L2 0 3313 2705 245 211 47 39 chr3 6195151 6195279 -211841879 + (CATATA)n Simple_repeat Simple_repeat 3 131 0 204 323 31 0 chr3 6195811 6195876 -211841282 + L2 LINE L2 3247 3313 0 453 280 40 13 chr3 6196158 6196308 -211840850 + L2 LINE L2 3154 3307 -6 1315 207 28 69 chr3 6196604 6196966 -211840192 - MER82 DNA MER2_type -305 348 2 206 257 46 9 chr3 6196967 6197076 -211840082 + (TA)n Simple_repeat Simple_repeat 2 114 0 339 25 0 0 chr3 6197314 6197354 -211839804 + (TA)n Simple_repeat Simple_repeat 1 40 0 962 77 0 8 chr3 6198278 6198408 -211838750 + L1PA10 LINE L1 6040 6168 0 228 35 0 0 chr3 6198493 6198522 -211838636 + (CA)n Simple_repeat Simple_repeat 2 30 0 2185 121 3 0 chr3 6198699 6199006 -211838152 + AluSx SINE Alu 1 308 -4 1817 119 159 68 chr3 6199218 6199588 -211837570 - MER4A LTR ERV1 0 664 261 638 121 0 10 chr3 6199588 6199687 -211837471 - MER4A LTR ERV1 -566 98 1 805 172 79 16 chr3 6199687 6199984 -211837174 + LTR54B LTR ERV1 54 405 -105 2396 102 83 137 chr3 6199998 6200575 -211836583 - LTR10A LTR ERV1 -63 546 1 581 150 9 9 chr3 6200575 6200688 -211836470 + LTR54 LTR ERV1 394 506 -4 520 296 51 5 chr3 6202538 6202734 -211834424 + L1ME LINE L1 5466 5670 -500 7295 97 15 2 chr3 6202832 6203905 -211833253 + L1P LINE L1 1850 2936 -3210 26 0 0 0 chr3 6204141 6204167 -211832991 + AT_rich Low_complexity Low_complexity 1 26 0 566 236 45 68 chr3 6204261 6204481 -211832677 + MIR SINE MIR 12 226 -36 2194 127 0 7 chr3 6204481 6204789 -211832369 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr3 6205446 6205475 -211831683 + AT_rich Low_complexity Low_complexity 1 29 0 2189 95 3 0 chr3 6206067 6206361 -211830797 + AluSp SINE Alu 1 295 -18 909 93 0 0 chr3 6206363 6206492 -211830666 + (TA)n Simple_repeat Simple_repeat 2 130 0 1176 185 88 55 chr3 6206641 6207004 -211830154 - MER39 LTR ERV1 -25 682 308 246 242 30 61 chr3 6206977 6207076 -211830082 - LTR48B LTR ERV1 -544 100 5 * 219 302 70 12 chr3 6208361 6208447 -211828711 - L2 LINE L2 -458 2856 2766 2384 93 3 0 chr3 6208944 6209254 -211827904 - AluSp SINE Alu -1 312 2 14732 96 4 16 chr3 6209659 6211833 -211825325 + HERVH LTR ERV1 845 2992 -4721 897 142 20 0 chr3 6211819 6211967 -211825191 + HERVH LTR ERV1 3140 3290 -4423 * 3254 113 6 8 chr3 6211957 6212460 -211824698 + HERVH LTR ERV1 3492 3993 -3720 4406 138 0 1 chr3 6212464 6213125 -211824033 + HERVH LTR ERV1 4490 5149 -2564 1363 113 38 0 chr3 6213126 6213338 -211823820 + HERVH LTR ERV1 5600 5819 -1894 * 2342 103 48 13 chr3 6213336 6213715 -211823443 + HERVH LTR ERV1 7322 7713 0 2794 78 92 5 chr3 6213715 6214127 -211823031 + LTR7 LTR ERV1 1 448 -2 308 247 6 137 chr3 6214165 6214347 -211822811 - L1MEd LINE L1 -4481 1648 1491 268 302 70 43 chr3 6214464 6215084 -211822074 - L1MEd LINE L1 -4618 1511 889 504 205 117 23 chr3 6215095 6215266 -211821892 - MER53 DNA DNA -2 187 1 27 73 0 0 chr3 6215303 6215358 -211821800 + AT_rich Low_complexity Low_complexity 1 55 0 1226 235 88 122 chr3 6215452 6216074 -211821084 + MLT1E1 LTR MaLR 3 603 -51 555 243 108 47 chr3 6217228 6217524 -211819634 + HAL1 LINE L1 1251 1564 -943 573 136 17 8 chr3 6217537 6217655 -211819503 + GA-rich Low_complexity Low_complexity 2 120 0 259 304 38 0 chr3 6218650 6218729 -211818429 - L2 LINE L2 -37 3276 3195 2764 99 0 0 chr3 6219197 6219561 -211817597 + THE1B LTR MaLR 1 364 0 2713 87 3 3 chr3 6220209 6220579 -211816579 + L1PA8 LINE L1 5795 6164 -8 210 37 0 0 chr3 6220858 6220885 -211816273 + (CA)n Simple_repeat Simple_repeat 1 27 0 897 194 0 29 chr3 6222214 6222384 -211814774 - FRAM SINE Alu -12 164 1 3259 197 43 64 chr3 6222411 6222918 -211814240 + L1MC3 LINE L1 6893 7374 -411 1096 204 42 4 chr3 6222918 6223178 -211813980 + L1PB4 LINE L1 5887 6156 0 3259 197 43 64 chr3 6223178 6223562 -211813596 + L1MC3 LINE L1 7374 7765 -20 2456 84 3 0 chr3 6223696 6224005 -211813153 - AluSp SINE Alu -3 310 1 2237 104 3 0 chr3 6226516 6226814 -211810344 + AluY SINE Alu 1 299 -12 278 290 161 0 chr3 6227879 6227972 -211809186 + MIR SINE MIR 52 159 -103 904 237 50 80 chr3 6227976 6228352 -211808806 + MLT1C LTR MaLR 1 365 -102 458 241 0 18 chr3 6228695 6228807 -211808351 + MLT1C LTR MaLR 358 467 0 1048 92 7 0 chr3 6229454 6229596 -211807562 + L1P LINE L1 2 144 -6002 1057 30 0 23 chr3 6229602 6229733 -211807425 + L1P1 LINE L1 5517 5644 -511 2297 90 0 0 chr3 6229734 6230022 -211807136 + AluY SINE Alu 10 297 -14 1770 176 115 16 chr3 6230022 6230517 -211806641 - L1M4c LINE L1 -4334 2048 1374 312 27 0 0 chr3 6230529 6230566 -211806592 + (TG)n Simple_repeat Simple_repeat 2 38 0 1993 172 112 84 chr3 6230968 6231614 -211805544 + MER4A LTR ERV1 1 664 0 1604 186 28 34 chr3 6231803 6232130 -211805028 + MER21B LTR ERV1 1 325 -538 1809 238 49 10 chr3 6232191 6232599 -211804559 + MER21B LTR ERV1 425 848 -15 435 321 93 22 chr3 6233456 6233873 -211803285 + L1ME4a LINE L1 5673 6119 -2 255 152 0 0 chr3 6234757 6234803 -211802355 + A-rich Low_complexity Low_complexity 1 46 0 367 328 15 15 chr3 6234935 6235066 -211802092 - L2 LINE L2 0 3313 3183 1185 231 9 47 chr3 6235656 6235976 -211801182 + L1MD2 LINE L1 6023 6330 -29 23 33 0 0 chr3 6237715 6237745 -211799413 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 6238047 6238085 -211799073 + AT_rich Low_complexity Low_complexity 1 38 0 2078 92 7 0 chr3 6238690 6238963 -211798195 + AluSc SINE Alu 2 276 -33 180 0 0 0 chr3 6239005 6239025 -211798133 + (GA)n Simple_repeat Simple_repeat 2 21 0 3576 187 29 22 chr3 6239485 6240894 -211796264 + L1MA9 LINE L1 4642 6176 -136 210 37 0 0 chr3 6240894 6240921 -211796237 + (CA)n Simple_repeat Simple_repeat 2 28 0 3576 187 29 22 chr3 6240921 6241059 -211796099 + L1MA9 LINE L1 6176 6312 0 22 0 0 0 chr3 6242370 6242392 -211794766 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr3 6242750 6242787 -211794371 + AT_rich Low_complexity Low_complexity 1 37 0 746 182 127 0 chr3 6243137 6243284 -211793874 - MSTA LTR MaLR -1 427 260 934 175 11 6 chr3 6243284 6243467 -211793691 - LTR2 LTR ERV1 0 449 266 817 180 0 136 chr3 6243524 6243752 -211793406 - Harlequin LTR ERV1 -1 6895 6699 1382 67 5 10 chr3 6244496 6244704 -211792454 + LTR7 LTR ERV1 242 448 -2 512 272 69 6 chr3 6244783 6244956 -211792202 + MER5A DNA MER1_type 4 187 -2 1042 183 0 0 chr3 6245232 6245401 -211791757 + FRAM SINE Alu 1 169 -7 747 248 96 0 chr3 6245427 6245625 -211791533 + MIR SINE MIR 46 262 0 2102 160 77 15 chr3 6245853 6246254 -211790904 - MSTB LTR MaLR 0 426 1 1679 190 0 43 chr3 6246574 6246900 -211790258 - AluJb SINE Alu 0 312 1 2912 208 64 29 chr3 6247775 6248560 -211788598 + L1MC2 LINE L1 5416 6227 -117 3438 169 51 34 chr3 6248990 6249159 -211787999 - L1MA6 LINE L1 -10 7311 7147 2272 168 20 0 chr3 6249159 6249552 -211787606 - MER57A LTR ERV1 0 403 3 2171 120 3 7 chr3 6249555 6249864 -211787294 + AluSx SINE Alu 3 310 -2 3438 169 51 34 chr3 6249864 6250124 -211787034 - L1MA6 LINE L1 -175 7146 6892 2389 115 16 19 chr3 6250124 6250498 -211786660 + THE1C LTR MaLR 3 375 0 3438 169 51 34 chr3 6250498 6250899 -211786259 - L1MA6 LINE L1 -429 6892 6461 * 9749 228 44 28 chr3 6250898 6251463 -211785695 - L1MA6 LINE L1 -1408 5759 5205 189 0 0 0 chr3 6251463 6251484 -211785674 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 9749 228 44 28 chr3 6251484 6255204 -211781954 - L1MA6 LINE L1 -1962 5205 1707 1331 307 58 53 chr3 6255481 6256123 -211781035 - L1MA6 LINE L1 -6144 1024 1 196 307 51 117 chr3 6256262 6256399 -211780759 + MIR3 SINE MIR 30 157 -51 1110 36 0 0 chr3 6256769 6256906 -211780252 - L1PA4 LINE L1 -3 6152 6016 631 275 13 61 chr3 6257285 6257514 -211779644 - MER20 DNA MER1_type -1 218 1 1152 199 55 65 chr3 6257604 6258020 -211779138 - L1MB8 LINE L1 -9 6169 5758 408 289 79 3 chr3 6258122 6258451 -211778707 - L1MEc LINE L1 -3653 2562 2209 301 311 88 51 chr3 6258462 6258513 -211778645 - L1MEc LINE L1 -4159 2237 2189 7072 59 6 1 chr3 6258513 6259612 -211777546 + L1PA8 LINE L1 5070 6172 0 301 311 88 51 chr3 6259612 6259891 -211777267 - L1MEc LINE L1 -4207 2189 1895 2769 92 92 5 chr3 6259893 6260305 -211776853 + LTR7 LTR ERV1 1 448 -2 4411 87 42 5 chr3 6260307 6260971 -211776187 + HERVH LTR ERV1 1 689 -7024 32 26 0 0 chr3 6262082 6262121 -211775037 + AT_rich Low_complexity Low_complexity 1 39 0 663 295 92 4 chr3 6262233 6262494 -211774664 + MLT1F LTR MaLR 1 284 -258 303 193 45 23 chr3 6262488 6262576 -211774582 + MLT1F LTR MaLR 474 563 -4 * 333 269 0 42 chr3 6262661 6262780 -211774378 + MLT1-int LTR MaLR 437 550 -821 1682 64 0 0 chr3 6262992 6263195 -211773963 - AluY SINE Alu -11 300 98 804 211 36 135 chr3 6263245 6263666 -211773492 - MLT1B LTR MaLR -8 382 4 1605 230 44 80 chr3 6263673 6264537 -211772621 - MLT1C-int LTR MaLR -4 1705 557 1073 164 13 4 chr3 6264521 6264784 -211772374 - MLT1C-int LTR MaLR -988 383 1 * 1133 206 124 79 chr3 6264784 6265226 -211771932 - MLT1C LTR MaLR 0 467 6 27 49 0 0 chr3 6265287 6265328 -211771830 + AT_rich Low_complexity Low_complexity 1 41 0 328 304 14 40 chr3 6265370 6265518 -211771640 + L1ME LINE L1 3682 3825 -2321 246 276 71 8 chr3 6265522 6265649 -211771509 - MLT1J LTR MaLR -3 508 374 270 314 20 52 chr3 6265754 6265907 -211771251 - MLT1J LTR MaLR -312 199 52 304 289 60 24 chr3 6266614 6266780 -211770378 + L1ME LINE L1 4545 4716 -1430 8403 38 2 0 chr3 6266827 6267898 -211769260 - L1PA3 LINE L1 -1782 4364 3292 8660 23 0 0 chr3 6267898 6269686 -211767472 + L1PA3 LINE L1 4365 6153 -2 29 47 0 0 chr3 6269944 6269987 -211767171 + AT_rich Low_complexity Low_complexity 1 43 0 254 272 39 39 chr3 6271169 6271272 -211765886 + L1ME LINE L1 5727 5829 -333 1439 286 12 45 chr3 6271498 6272008 -211765150 + L1MA4A LINE L1 1 493 -6356 4231 208 24 35 chr3 6272070 6272851 -211764307 + L1MA4A LINE L1 1168 1935 -4914 2260 114 0 16 chr3 6272851 6273168 -211763990 + AluSx SINE Alu 1 312 0 4231 208 24 35 chr3 6273168 6273465 -211763693 + L1MA4A LINE L1 1935 2234 -4615 4825 141 6 4 chr3 6273508 6274331 -211762827 + L1PA16 LINE L1 5329 6153 -13 9020 180 45 10 chr3 6274355 6275492 -211761666 + L1MA4A LINE L1 3881 4976 -2029 2547 65 0 0 chr3 6275492 6275800 -211761358 + AluY SINE Alu 1 308 -3 9020 180 45 10 chr3 6275800 6276738 -211760420 + L1MA4A LINE L1 4976 5879 -1126 1467 118 5 0 chr3 6276738 6276941 -211760217 + AluSq SINE Alu 101 304 -9 9020 180 45 10 chr3 6276941 6277717 -211759441 + L1MA4A LINE L1 5879 6821 -184 403 177 10 42 chr3 6277718 6277814 -211759344 + L1MA4A LINE L1 6890 6982 -23 249 250 31 0 chr3 6278748 6278812 -211758346 - MLT2D LTR ERVL -118 296 231 237 192 39 0 chr3 6279120 6279172 -211757986 - MLT2D LTR ERVL -130 284 231 324 0 0 0 chr3 6279357 6279393 -211757765 + (GA)n Simple_repeat Simple_repeat 2 37 0 355 348 61 6 chr3 6280566 6280730 -211756428 - L1ME LINE L1 -348 5822 5650 1453 158 9 0 chr3 6281078 6281299 -211755859 - AluSg/x SINE Alu -25 287 65 6729 122 14 53 chr3 6281300 6282212 -211754946 - L1M1 LINE L1 -4670 2895 1949 1889 186 0 3 chr3 6282212 6282519 -211754639 - AluJb SINE Alu -6 306 1 6729 122 14 53 chr3 6282519 6282540 -211754618 - L1M1 LINE L1 -5616 1949 1929 2171 108 4 0 chr3 6282540 6282819 -211754339 - AluSp SINE Alu -33 280 1 6729 122 14 53 chr3 6282819 6283139 -211754019 - L1M1 LINE L1 -5636 1929 1690 823 234 6 33 chr3 6283139 6283496 -211753662 - LTR2 LTR ERV1 0 449 3 801 154 0 0 chr3 6283498 6283634 -211753524 - Harlequin LTR ERV1 0 6896 6761 29339 163 8 19 chr3 6283691 6288998 -211748160 - Harlequin LTR ERV1 -1297 6516 1266 2721 164 30 6 chr3 6288999 6289493 -211747665 - Harlequin LTR ERV1 -6796 1017 512 2095 170 3 13 chr3 6289574 6289962 -211747196 - Harlequin LTR ERV1 -6512 384 1 850 201 5 5 chr3 6289962 6290146 -211747012 - LTR2 LTR ERV1 0 449 266 1186 155 71 8 chr3 6290215 6290454 -211746704 - MSTA LTR MaLR -164 264 11 22 0 0 0 chr3 6291057 6291079 -211746079 + AT_rich Low_complexity Low_complexity 1 22 0 1749 117 79 10 chr3 6291371 6291662 -211745496 + L1PA10 LINE L1 5858 6168 0 3049 211 17 43 chr3 6293538 6293922 -211743236 + L1ME2 LINE L1 4867 5259 -1075 2225 138 8 114 chr3 6293922 6294063 -211743095 - Tigger2a DNA MER2_type -2274 434 280 1367 184 54 22 chr3 6294063 6294340 -211742818 - AluJo SINE Alu -26 286 1 2225 138 8 114 chr3 6294340 6294682 -211742476 - Tigger2a DNA MER2_type -2428 280 2 3049 211 17 43 chr3 6294682 6294929 -211742229 + L1ME2 LINE L1 5259 5511 -823 1707 195 72 60 chr3 6294929 6295426 -211741732 - MLT1D LTR MaLR -2 503 1 3049 211 17 43 chr3 6295426 6296095 -211741063 + L1ME2 LINE L1 5511 6331 -3 21 0 0 0 chr3 6296494 6296515 -211740643 + AT_rich Low_complexity Low_complexity 1 21 0 1207 215 11 21 chr3 6298675 6298954 -211738204 - MLT1C LTR MaLR -6 461 186 711 177 77 86 chr3 6298957 6299177 -211737981 - MLT1C LTR MaLR -249 218 1 214 304 0 0 chr3 6299408 6299464 -211737694 + L2 LINE L2 3217 3272 0 1676 169 177 14 chr3 6299498 6299859 -211737299 + MSTA LTR MaLR 9 428 0 191 185 0 19 chr3 6300908 6300962 -211736196 + (TA)n Simple_repeat Simple_repeat 1 53 0 275 290 45 142 chr3 6301153 6301484 -211735674 + L2 LINE L2 2969 3267 -5 1867 125 3 10 chr3 6302697 6302985 -211734173 - L1PA11 LINE L1 -1 6173 5888 21 0 0 0 chr3 6303188 6303209 -211733949 + AT_rich Low_complexity Low_complexity 1 21 0 1266 251 94 23 chr3 6303248 6304181 -211732977 - L1ME1 LINE L1 -18 6148 5122 6685 135 17 8 chr3 6304226 6305533 -211731625 - L1MA1 LINE L1 -8 6294 4974 2009 141 26 32 chr3 6305549 6305926 -211731232 + THE1C LTR MaLR 1 375 0 8723 132 26 31 chr3 6305952 6307380 -211729778 + THE1C-int LTR MaLR 161 1580 0 1314 158 13 18 chr3 6307380 6307608 -211729550 + THE1C LTR MaLR 1 227 -148 658 130 10 0 chr3 6307610 6307710 -211729448 - LTR28 LTR ERV1 -919 101 1 18109 177 37 12 chr3 6307710 6311107 -211726051 - L1M1 LINE L1 -4077 3488 7 2434 262 56 40 chr3 6311105 6311686 -211725472 - L1ME1 LINE L1 -1080 5066 4496 * 1733 173 52 25 chr3 6311686 6312051 -211725107 - THE1C LTR MaLR 0 375 1 2434 262 56 40 chr3 6312051 6312678 -211724480 - L1ME1 LINE L1 -1650 4496 3839 1048 245 31 0 chr3 6312697 6312750 -211724408 - L1ME1 LINE L1 -3408 2738 2688 448 16 33 0 chr3 6312750 6312811 -211724347 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1048 245 31 0 chr3 6312811 6313043 -211724115 - L1ME1 LINE L1 -3458 2688 2444 1150 235 93 55 chr3 6313056 6313410 -211723748 + L1ME1 LINE L1 4682 5021 -1145 1926 154 28 25 chr3 6313410 6313773 -211723385 - THE1B LTR MaLR 0 364 1 1150 235 93 55 chr3 6313773 6314448 -211722710 + L1ME1 LINE L1 5021 5735 -431 24321 107 14 2 chr3 6314456 6318924 -211718234 - L1PA7 LINE L1 -4 6465 1963 235 252 7 43 chr3 6318959 6319098 -211718060 + (CACCC)n Simple_repeat Simple_repeat 2 135 0 186 192 0 0 chr3 6319101 6319153 -211718005 + C-rich Low_complexity Low_complexity 1 52 0 11692 126 14 18 chr3 6319257 6321322 -211715836 - L1PA7 LINE L1 -4379 2082 5 1437 241 32 15 chr3 6321330 6321740 -211715418 + L1ME1 LINE L1 5736 6152 -14 198 286 55 22 chr3 6321818 6321909 -211715249 - L2 LINE L2 -534 2780 2687 180 0 0 0 chr3 6322109 6322129 -211715029 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5776 22 1 0 chr3 6322129 6322799 -211714359 - L1PA3 LINE L1 -11 6144 5474 20663 50 51 4 chr3 6322899 6325567 -211711591 - L1P LINE L1 -3352 2794 2 6220 199 34 14 chr3 6325789 6327039 -211710119 - MSTB-int LTR MaLR -375 1276 1 1316 183 29 17 chr3 6327039 6327280 -211709878 - MSTB LTR MaLR 0 426 183 2131 175 51 24 chr3 6327280 6327771 -211709387 - MER75 DNA T2_type 0 514 11 428 172 0 0 chr3 6327753 6327817 -211709341 - MER75 DNA T2_type -443 71 8 * 1008 193 11 16 chr3 6327817 6328004 -211709154 - MSTB LTR MaLR -240 186 1 803 180 22 51 chr3 6328706 6328884 -211708274 + MER58A DNA MER1_type 45 217 -7 21 0 0 0 chr3 6329276 6329297 -211707861 + AT_rich Low_complexity Low_complexity 1 21 0 227 344 150 22 chr3 6329325 6329505 -211707653 + L3 LINE CR1 1374 1576 -1 280 276 200 5 chr3 6329952 6330162 -211706996 - L1ME4a LINE L1 -113 6008 5758 2185 171 55 0 chr3 6331627 6332025 -211705133 + MSTB LTR MaLR 1 420 -6 349 273 116 0 chr3 6332565 6332686 -211704472 + MIR SINE MIR 65 199 -63 185 397 0 0 chr3 6334290 6334358 -211702800 + L2 LINE L2 2794 2861 -453 190 373 15 0 chr3 6335868 6335935 -211701223 + MIR3 SINE MIR 89 156 -52 211 284 54 0 chr3 6335987 6336061 -211701097 - MIR SINE MIR -5 257 180 1322 206 16 38 chr3 6336105 6336420 -211700738 + AluJo SINE Alu 3 310 -2 514 296 22 22 chr3 6336725 6336904 -211700254 - MLT1J LTR MaLR -325 186 8 198 325 98 32 chr3 6336922 6337045 -211700113 - MIR SINE MIR -115 147 17 24 0 0 0 chr3 6337536 6337560 -211699598 + AT_rich Low_complexity Low_complexity 1 24 0 217 117 83 0 chr3 6337989 6338049 -211699109 + (TA)n Simple_repeat Simple_repeat 1 65 0 333 296 110 76 chr3 6338618 6338858 -211698300 - HAL1 LINE L1 -556 1951 1692 904 223 0 0 chr3 6338858 6339033 -211698125 - FAM SINE Alu 0 175 1 333 296 110 76 chr3 6339033 6339174 -211697984 - HAL1 LINE L1 -815 1692 1557 401 315 123 30 chr3 6339181 6339416 -211697742 - HAL1 LINE L1 -1090 1417 1161 1127 235 39 78 chr3 6339839 6340251 -211696907 - MSTD LTR MaLR 0 396 1 1848 152 3 7 chr3 6340548 6340837 -211696321 - AluSx SINE Alu -14 298 11 233 292 0 0 chr3 6340972 6341044 -211696114 + MER116 DNA Mariner 6 77 -3 1604 64 0 0 chr3 6542333 6542520 -211494638 + AluSc SINE Alu 103 289 -20 711 95 52 26 chr3 6542521 6542637 -211494521 - MER30 DNA MER1_type -111 119 1 535 225 113 31 chr3 6542642 6542802 -211494356 - MIR SINE MIR -61 201 29 382 283 5 43 chr3 6542910 6543094 -211494064 + CT-rich Low_complexity Low_complexity 2 178 0 1959 142 14 7 chr3 6543101 6543396 -211493762 - AluJb SINE Alu -15 297 1 385 216 23 23 chr3 6543526 6543614 -211493544 + L2 LINE L2 3221 3308 -5 1842 148 53 0 chr3 6543693 6543977 -211493181 + AluJb SINE Alu 1 299 -13 1334 104 0 0 chr3 6544067 6544240 -211492918 + AluSp SINE Alu 132 304 -9 1848 169 76 56 chr3 6544812 6545262 -211491896 - MLT1D LTR MaLR -46 459 1 206 286 0 0 chr3 6545262 6545311 -211491847 + MIR SINE MIR 159 207 -55 292 323 21 0 chr3 6545500 6545593 -211491565 - MIR3 SINE MIR -6 202 108 250 283 76 0 chr3 6545960 6546052 -211491106 + MLT1K LTR MaLR 210 308 -280 2032 124 9 25 chr3 6546434 6546749 -211490409 - AluSx SINE Alu -2 310 1 239 295 67 0 chr3 6546924 6547029 -211490129 - L1ME4a LINE L1 0 6121 6010 589 338 18 14 chr3 6547087 6547306 -211489852 - MIR SINE MIR -1 261 42 627 219 14 0 chr3 6547442 6547588 -211489570 - L1MA10 LINE L1 -13 6321 6174 2031 137 14 0 chr3 6547589 6547881 -211489277 + AluJo SINE Alu 1 296 -16 478 262 31 50 chr3 6547881 6548124 -211489034 - L1MD2 LINE L1 -139 6027 5788 241 317 156 75 chr3 6548172 6548371 -211488787 + MIR SINE MIR 38 252 -10 406 293 73 44 chr3 6548976 6549181 -211487977 + MIR SINE MIR 31 241 -21 263 93 23 0 chr3 6549240 6549283 -211487875 + (TG)n Simple_repeat Simple_repeat 2 45 0 892 269 129 6 chr3 6549383 6549717 -211487441 + L3 LINE CR1 1161 1535 -42 291 154 0 0 chr3 6549870 6549909 -211487249 + T-rich Low_complexity Low_complexity 1 39 0 1654 110 4 25 chr3 6550915 6551160 -211485998 - AluSq SINE Alu -7 306 67 1251 154 113 58 chr3 6551171 6551464 -211485694 - AluJo SINE Alu -3 309 1 2036 121 0 27 chr3 6551741 6552038 -211485120 - AluSg SINE Alu -21 289 1 274 234 0 0 chr3 6552395 6552459 -211484699 - MIR SINE MIR -132 130 67 198 313 205 0 chr3 6552489 6552572 -211484586 - L2 LINE L2 -18 3254 3155 2399 100 0 0 chr3 6552614 6552915 -211484243 - AluSx SINE Alu -11 301 1 427 118 24 0 chr3 6553515 6553600 -211483558 + CT-rich Low_complexity Low_complexity 2 88 0 1852 172 3 3 chr3 6553763 6554059 -211483099 - AluJb SINE Alu -16 296 1 183 217 0 0 chr3 6554565 6554625 -211482533 + GA-rich Low_complexity Low_complexity 2 61 0 1346 158 63 60 chr3 6554904 6555189 -211481969 + AluJo SINE Alu 23 308 -4 686 159 0 90 chr3 6555668 6555702 -211481456 - MER94 DNA DNA -1 133 98 2239 110 3 13 chr3 6555702 6556001 -211481157 - AluSx SINE Alu -16 296 1 686 159 0 90 chr3 6556001 6556111 -211481047 - MER94 DNA DNA -36 98 2 2229 157 60 35 chr3 6556150 6556602 -211480556 + MLT1C LTR MaLR 5 467 0 2345 107 22 19 chr3 6556725 6557091 -211480067 - L1PA16 LINE L1 0 6166 5800 2215 118 10 0 chr3 6557092 6557388 -211479770 - AluSq SINE Alu -14 299 1 2233 135 0 3 chr3 6557961 6558273 -211478885 + AluSx SINE Alu 1 311 -1 2137 135 0 3 chr3 6558462 6558766 -211478392 + AluSq SINE Alu 1 303 -10 1767 134 0 4 chr3 6558770 6559016 -211478142 + AluSq SINE Alu 1 245 -68 547 111 12 12 chr3 6559117 6559198 -211477960 - AluY SINE Alu -233 85 5 489 260 52 19 chr3 6559208 6559362 -211477796 - MER112 DNA MER1_type -12 248 90 2165 135 0 16 chr3 6559380 6559692 -211477466 - AluSq SINE Alu -6 307 1 267 222 16 0 chr3 6559860 6559923 -211477235 - MER112 DNA MER1_type -187 73 10 424 252 53 8 chr3 6560190 6560321 -211476837 - MER91C DNA MER1_type 0 140 4 413 267 79 43 chr3 6560324 6560493 -211476665 + MIR SINE MIR 8 191 -17 206 302 79 0 chr3 6560459 6560522 -211476636 + L2 LINE L2 3242 3309 -4 * 228 277 12 48 chr3 6560510 6560593 -211476565 + MIR SINE MIR 134 213 -49 218 279 186 31 chr3 6561945 6562074 -211475084 + L2 LINE L2 3163 3311 -2 1881 110 12 95 chr3 6562724 6562786 -211474372 + L1PBa LINE L1 1552 1618 -5245 2256 108 0 29 chr3 6562786 6563100 -211474058 + AluSx SINE Alu 1 305 -7 1881 110 12 95 chr3 6563100 6563447 -211473711 + L1PBa LINE L1 1618 1927 -4936 274 171 157 14 chr3 6563598 6563668 -211473490 + L2 LINE L2 3229 3308 -5 811 213 38 85 chr3 6563773 6563881 -211473277 - MIR SINE MIR -10 252 159 2008 122 40 0 chr3 6563881 6564177 -211472981 + AluSx SINE Alu 1 308 -4 811 213 38 85 chr3 6564177 6564303 -211472855 - MIR SINE MIR -103 159 29 601 326 84 45 chr3 6565011 6565530 -211471628 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 6565647 6565674 -211471484 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 2095 126 0 3 chr3 6565674 6565959 -211471199 - AluSx SINE Alu -28 284 1 1451 194 0 68 chr3 6565961 6566285 -211470873 - AluJo SINE Alu -10 302 1 318 163 102 41 chr3 6566587 6566685 -211470473 + MLT1K LTR MaLR 485 588 0 342 0 0 0 chr3 6566768 6566806 -211470352 + (A)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chr3 6566818 6566851 -211470307 + AT_rich Low_complexity Low_complexity 1 33 0 265 109 0 0 chr3 6567045 6567091 -211470067 + L1PA6 LINE L1 6109 6154 0 29 0 0 0 chr3 6567120 6567149 -211470009 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 6567185 6567323 -211469835 + (TA)n Simple_repeat Simple_repeat 1 143 0 268 324 102 25 chr3 6567330 6567561 -211469597 + L2 LINE L2 2791 3037 -276 225 307 86 57 chr3 6567597 6567737 -211469421 + L2 LINE L2 3168 3311 -2 1956 150 0 25 chr3 6567753 6567933 -211469225 - AluSx SINE Alu 0 312 142 2410 81 3 7 chr3 6567933 6568230 -211468928 - AluSg SINE Alu -13 297 2 1956 150 0 25 chr3 6568230 6568369 -211468789 - AluSx SINE Alu -170 142 1 186 43 0 0 chr3 6568434 6568457 -211468701 + (TA)n Simple_repeat Simple_repeat 1 23 0 1749 153 20 20 chr3 6568457 6568752 -211468406 - AluJb SINE Alu -13 299 5 252 100 0 0 chr3 6568762 6568802 -211468356 + (TG)n Simple_repeat Simple_repeat 1 40 0 1752 181 7 11 chr3 6568802 6568950 -211468208 - AluJo SINE Alu -31 281 133 2441 61 0 52 chr3 6568950 6569276 -211467882 - AluY SINE Alu -2 309 1 1752 181 7 11 chr3 6569276 6569409 -211467749 - AluJo SINE Alu -179 133 1 441 301 58 13 chr3 6569508 6569664 -211467494 + MIR SINE MIR 61 223 -39 343 289 44 61 chr3 6569753 6569933 -211467225 - MIR SINE MIR -41 221 45 1671 179 0 32 chr3 6570137 6570449 -211466709 - AluJo SINE Alu 0 312 11 2198 106 10 0 chr3 6570602 6570894 -211466264 - AluSq SINE Alu -18 295 1 468 0 0 0 chr3 6571235 6571287 -211465871 + (TG)n Simple_repeat Simple_repeat 2 53 0 305 143 0 16 chr3 6571297 6571360 -211465798 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 252 302 0 8 chr3 6571360 6571489 -211465669 - AluSg/x SINE Alu 0 300 173 1919 114 40 11 chr3 6571589 6571861 -211465297 - AluSx SINE Alu -32 280 1 500 177 8 23 chr3 6571874 6572004 -211465154 + CT-rich Low_complexity Low_complexity 1 128 0 2401 99 0 0 chr3 6572004 6572307 -211464851 - AluSx SINE Alu -9 303 1 750 157 0 57 chr3 6572307 6572447 -211464711 - AluJo/FLAM SINE Alu -170 132 1 301 259 61 83 chr3 6572497 6572725 -211464433 + MER102b DNA MER1_type 118 340 -1 579 230 182 7 chr3 6573409 6573557 -211463601 + MER5A DNA MER1_type 1 174 -15 803 172 0 8 chr3 6573571 6573705 -211463453 + FLAM_C SINE Alu 1 133 0 327 65 0 0 chr3 6573705 6573751 -211463407 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 2079 124 16 16 chr3 6573803 6574110 -211463048 + AluSx SINE Alu 1 307 -5 237 163 20 0 chr3 6574151 6574200 -211462958 - Charlie1b DNA MER1_type 0 523 474 2222 117 0 3 chr3 6574222 6574521 -211462637 + AluSx SINE Alu 1 298 -14 48 18 0 0 chr3 6574540 6574595 -211462563 + AT_rich Low_complexity Low_complexity 1 55 0 1552 171 90 22 chr3 6574602 6574970 -211462188 - Charlie1b DNA MER1_type -130 393 1 2216 110 10 0 chr3 6575073 6575372 -211461786 + AluSq SINE Alu 2 303 -10 245 285 17 69 chr3 6575392 6575508 -211461650 + MIR SINE MIR 46 156 -52 2326 66 0 30 chr3 6575513 6575817 -211461341 + AluY SINE Alu 3 297 -14 618 182 0 0 chr3 6576926 6577025 -211460133 - AluJ/FLAM SINE Alu -213 99 1 339 263 150 0 chr3 6577151 6577284 -211459874 - L3 LINE CR1 -153 1424 1272 1479 159 115 30 chr3 6578073 6578343 -211458815 - AluJo SINE Alu -14 298 6 879 230 162 77 chr3 6578347 6578712 -211458446 + MLT1K LTR MaLR 34 429 -159 2287 104 0 10 chr3 6578757 6579065 -211458093 - AluSx SINE Alu -7 305 1 2110 179 35 31 chr3 6579065 6579144 -211458014 - Charlie1 DNA MER1_type -11 2750 2673 2054 153 0 0 chr3 6579144 6579444 -211457714 - AluSx SINE Alu -12 300 1 2110 179 35 31 chr3 6579444 6579906 -211457252 - Charlie1 DNA MER1_type -88 2673 2207 619 250 14 7 chr3 6579902 6580042 -211457116 - Charlie1 DNA MER1_type -2620 141 1 * 593 27 13 0 chr3 6580135 6580210 -211456948 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1702 175 14 3 chr3 6580210 6580489 -211456669 - AluJb SINE Alu -27 285 1 315 342 46 97 chr3 6580557 6580624 -211456534 - L2 LINE L2 -2 3270 3201 3150 173 39 22 chr3 6580624 6581065 -211456093 + MER6A DNA MER2_type 1 433 -432 2319 86 0 3 chr3 6581065 6581357 -211455801 - AluSc SINE Alu -18 291 1 2321 105 0 0 chr3 6581358 6581654 -211455504 - AluSx SINE Alu -16 296 1 3150 173 39 22 chr3 6581654 6581805 -211455353 + MER6A DNA MER2_type 432 605 0 315 342 46 97 chr3 6581805 6582170 -211454988 - L2 LINE L2 -71 3201 2860 2264 114 3 0 chr3 6582395 6582692 -211454466 + AluSg SINE Alu 3 300 -10 1369 267 30 39 chr3 6582811 6583027 -211454131 - LTR16A LTR ERVL 0 450 238 2209 123 0 0 chr3 6583027 6583320 -211453838 + AluSx SINE Alu 1 293 -19 1369 267 30 39 chr3 6583320 6583538 -211453620 - LTR16A LTR ERVL -212 238 20 253 356 9 0 chr3 6583708 6583823 -211453335 + L2 LINE L2 2828 2943 -370 1402 153 142 54 chr3 6583981 6584334 -211452824 - MLT1B LTR MaLR -6 384 1 374 283 35 0 chr3 6584429 6584542 -211452616 - MIR SINE MIR -14 248 132 1830 150 10 20 chr3 6585162 6585321 -211451837 - AluJo SINE Alu -22 290 134 2225 103 0 63 chr3 6585321 6585652 -211451506 - AluSg SINE Alu 0 310 1 1830 150 10 20 chr3 6585652 6585785 -211451373 - AluJo SINE Alu -178 134 1 389 296 53 59 chr3 6586095 6586264 -211450894 - MER5A DNA MER1_type 0 189 22 1838 157 7 20 chr3 6586963 6587263 -211449895 - AluSx SINE Alu -16 296 1 21 0 0 0 chr3 6588190 6588211 -211448947 + AT_rich Low_complexity Low_complexity 1 21 0 2242 109 3 0 chr3 6588470 6588774 -211448384 + AluSx SINE Alu 1 305 -7 470 239 93 71 chr3 6590108 6590427 -211446731 + Charlie7 DNA MER1_type 314 624 -1988 1820 192 13 0 chr3 6590427 6590735 -211446423 + AluJo SINE Alu 1 312 0 470 239 93 71 chr3 6590735 6590848 -211446310 + Charlie7 DNA MER1_type 624 2583 -29 778 90 0 0 chr3 6590868 6590968 -211446190 + HY3 scRNA scRNA 1 100 -1 36 23 0 0 chr3 6590973 6591016 -211446142 + AT_rich Low_complexity Low_complexity 1 43 0 464 152 0 43 chr3 6591199 6591291 -211445867 + AluJ/FRAM SINE Alu 223 310 -2 878 204 86 73 chr3 6591337 6591514 -211445644 + L1M4 LINE L1 5016 5189 -957 2176 136 13 0 chr3 6591514 6591822 -211445336 + AluSx SINE Alu 1 312 0 878 204 86 73 chr3 6591822 6591993 -211445165 + L1M4 LINE L1 5189 5372 -774 1960 129 3 45 chr3 6591993 6592304 -211444854 + AluSx SINE Alu 4 301 -11 878 204 86 73 chr3 6592304 6592326 -211444832 + L1M4 LINE L1 5372 5392 -754 239 188 83 0 chr3 6592336 6592384 -211444774 - L2 LINE L2 0 3272 3221 237 132 0 0 chr3 6592917 6592955 -211444203 + (TTC)n Simple_repeat Simple_repeat 2 39 0 2065 125 3 27 chr3 6593177 6593474 -211443684 + AluSx SINE Alu 1 290 -22 449 274 37 22 chr3 6593474 6593599 -211443559 + MIR3 SINE MIR 58 187 -21 1831 160 13 53 chr3 6593697 6594015 -211443143 + AluSx SINE Alu 1 305 -7 2254 108 0 0 chr3 6594026 6594333 -211442825 + AluSx SINE Alu 1 307 -5 955 145 0 13 chr3 6594333 6594511 -211442647 + AluSg/x SINE Alu 132 307 0 1318 181 115 0 chr3 6594518 6594806 -211442352 - L1MC2 LINE L1 -22 6322 6002 22 0 0 0 chr3 6594807 6594829 -211442329 + AT_rich Low_complexity Low_complexity 1 22 0 1690 171 4 4 chr3 6594878 6595159 -211441999 - AluJb SINE Alu -31 281 1 1941 118 24 10 chr3 6595399 6595695 -211441463 + AluSx SINE Alu 1 300 -12 1014 146 6 0 chr3 6595991 6596162 -211440996 - AluJ SINE Alu 0 312 141 803 167 0 14 chr3 6596213 6596351 -211440807 - AluJ SINE Alu -175 137 2 363 324 171 0 chr3 6596417 6596587 -211440571 + MIR SINE MIR 52 250 -12 877 212 4 100 chr3 6596808 6597049 -211440109 - MER20 DNA MER1_type 0 219 2 334 191 32 0 chr3 6597168 6597231 -211439927 - MER97b DNA MER1_type? -876 177 113 1767 112 6 74 chr3 6597235 6597380 -211439778 + AluSx SINE Alu 1 115 -197 2160 78 28 0 chr3 6597380 6597664 -211439494 + AluSg SINE Alu 14 305 -5 1767 112 6 74 chr3 6597664 6597830 -211439328 + AluSx SINE Alu 115 291 -21 689 146 9 9 chr3 6597839 6597949 -211439209 + AluJb SINE Alu 2 111 -201 260 109 0 22 chr3 6597965 6598011 -211439147 + (GGA)n Simple_repeat Simple_repeat 2 46 0 345 263 32 0 chr3 6598038 6598133 -211439025 - MER97c DNA MER1_type? -966 124 27 213 227 0 30 chr3 6598143 6598209 -211438949 + CT-rich Low_complexity Low_complexity 4 67 0 787 163 7 22 chr3 6598287 6598422 -211438736 + FLAM_C SINE Alu 1 133 0 2496 135 46 14 chr3 6598457 6598487 -211438671 + MER65A LTR ERV1 1 29 -416 1905 126 0 0 chr3 6598487 6598758 -211438400 + AluSx SINE Alu 1 271 -41 2496 135 46 14 chr3 6598758 6599158 -211438000 + MER65A LTR ERV1 29 445 0 2012 127 13 0 chr3 6599651 6599950 -211437208 - AluSg SINE Alu -7 303 1 1801 128 3 61 chr3 6600005 6600318 -211436840 - AluSp SINE Alu -18 295 1 467 50 0 0 chr3 6600845 6600905 -211436253 - Alu SINE Alu -252 61 2 540 157 112 0 chr3 6600905 6600994 -211436164 + MER30 DNA MER1_type 132 230 0 277 267 0 27 chr3 6601158 6601233 -211435925 - MER94 DNA DNA -61 73 1 418 258 144 6 chr3 6601250 6601417 -211435741 - MER102b DNA MER1_type -49 292 103 230 256 14 145 chr3 6601532 6601739 -211435419 - L2 LINE L2 -92 3180 3001 707 283 0 12 chr3 6601795 6601968 -211435190 - MIR SINE MIR -24 238 68 2050 116 0 0 chr3 6602304 6602588 -211434570 + AluSc SINE Alu 1 284 -25 216 175 175 0 chr3 6602634 6602691 -211434467 - MIR SINE MIR -108 100 34 333 284 129 32 chr3 6603381 6603536 -211433622 - L2 LINE L2 -7 3306 3137 1016 192 23 46 chr3 6603556 6603775 -211433383 - MER20 DNA MER1_type -5 214 1 1563 164 7 14 chr3 6603837 6604123 -211433035 + AluJo SINE Alu 14 297 -15 1040 148 61 13 chr3 6604123 6604353 -211432805 - MER33 DNA MER1_type -24 300 60 336 198 143 11 chr3 6604450 6604541 -211432617 + MER5A DNA MER1_type 4 106 -83 222 224 129 12 chr3 6604688 6604773 -211432385 + MIR SINE MIR 99 193 -69 2041 110 3 0 chr3 6605834 6606124 -211431034 + AluSx SINE Alu 1 291 -21 342 76 0 45 chr3 6606136 6606202 -211430956 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 557 245 182 10 chr3 6606429 6606621 -211430537 + MIR SINE MIR 33 257 -5 336 255 92 10 chr3 6606636 6606734 -211430424 - MIR SINE MIR -155 107 2 275 262 0 0 chr3 6606819 6606880 -211430278 + MLT1K LTR MaLR 5 65 -523 676 260 250 32 chr3 6606900 6607212 -211429946 + MLT1K LTR MaLR 206 585 -3 2138 117 3 0 chr3 6607584 6607892 -211429266 - AluSq SINE Alu -4 309 1 181 200 25 0 chr3 6607969 6608009 -211429149 - L2 LINE L2 -5 3267 3227 2184 153 46 57 chr3 6608652 6608700 -211428458 - L1MB4 LINE L1 0 6180 6133 1599 175 3 3 chr3 6608700 6608985 -211428173 - AluJb SINE Alu -17 295 11 2184 153 46 57 chr3 6608985 6609413 -211427745 - L1MB4 LINE L1 -47 6133 5709 280 231 0 0 chr3 6609595 6609647 -211427511 + 5S rRNA rRNA 1 52 -69 646 208 60 24 chr3 6609911 6610079 -211427079 + MIR SINE MIR 72 245 -17 271 167 111 0 chr3 6610329 6610383 -211426775 + MIR SINE MIR 123 182 -80 1758 149 0 34 chr3 6610518 6610841 -211426317 + AluSx SINE Alu 1 312 0 189 94 0 0 chr3 6610929 6610961 -211426197 + (CAACC)n Simple_repeat Simple_repeat 2 33 0 466 209 0 11 chr3 6611091 6611182 -211425976 - MLT1I LTR MaLR -259 150 61 2626 97 28 14 chr3 6611185 6611546 -211425612 + THE1C LTR MaLR 10 375 0 711 261 96 5 chr3 6611608 6611826 -211425332 - MLT1L LTR MaLR -10 605 368 4731 136 16 6 chr3 6611850 6612554 -211424604 + MER50 LTR ERV1 1 711 -23 1921 136 0 28 chr3 6612604 6612921 -211424237 - AluJb SINE Alu -4 308 1 502 281 75 48 chr3 6612924 6613219 -211423939 - MLT1L LTR MaLR -310 305 3 254 259 111 0 chr3 6613262 6613343 -211423815 - MIR SINE MIR -59 203 114 2060 123 0 3 chr3 6613822 6614123 -211423035 + AluSx SINE Alu 1 300 -12 716 201 0 29 chr3 6614384 6614523 -211422635 + FLAM_C SINE Alu 6 140 -3 457 304 125 18 chr3 6614581 6614805 -211422353 - MIR SINE MIR -12 250 3 333 239 14 34 chr3 6614895 6615001 -211422157 - MIR SINE MIR -92 116 14 480 295 95 20 chr3 6615844 6616044 -211421114 + MIR SINE MIR 47 261 -1 185 108 27 0 chr3 6616343 6616380 -211420778 + (TGG)n Simple_repeat Simple_repeat 3 40 0 649 298 102 80 chr3 6616799 6617239 -211419919 - L2 LINE L2 -9 3263 2814 1873 113 57 0 chr3 6617282 6617565 -211419593 - AluSx SINE Alu -9 303 5 223 316 143 0 chr3 6618022 6618120 -211419038 - L2 LINE L2 -5 3308 3197 578 254 9 111 chr3 6618131 6618252 -211418906 - MIR SINE MIR -48 214 123 1934 133 0 14 chr3 6618252 6618545 -211418613 + AluSx SINE Alu 1 289 -23 578 254 9 111 chr3 6618545 6618640 -211418518 - MIR SINE MIR -139 123 20 818 146 0 8 chr3 6618667 6618790 -211418368 - FLAM_C SINE Alu -16 127 6 1054 267 140 32 chr3 6619293 6619757 -211417401 + MER20B DNA MER1_type 2 515 -268 849 205 21 38 chr3 6619863 6620102 -211417056 + MER20B DNA MER1_type 515 749 -34 2112 104 40 0 chr3 6620105 6620403 -211416755 + AluSx SINE Alu 1 310 -2 326 194 97 0 chr3 6620480 6620552 -211416606 + MER20B DNA MER1_type 207 285 -498 444 111 0 0 chr3 6620568 6620640 -211416518 + Alu SINE Alu 237 308 -2 974 243 46 102 chr3 6620722 6621204 -211415954 - L2 LINE L2 -664 2650 2196 1718 126 0 37 chr3 6621523 6621817 -211415341 + AluJb SINE Alu 12 294 -18 409 185 0 0 chr3 6622195 6622260 -211414898 - AluJ/FLAM SINE Alu -246 66 2 1845 147 3 7 chr3 6622722 6623014 -211414144 - AluJb SINE Alu -21 291 1 189 0 0 0 chr3 6623105 6623126 -211414032 + (A)n Simple_repeat Simple_repeat 1 21 0 6293 94 47 10 chr3 6623585 6624519 -211412639 + LTR5 LTR ERVK 1 969 0 1129 123 6 0 chr3 6625611 6625774 -211411384 - AluJ SINE Alu -14 298 135 201 74 0 0 chr3 6626042 6626069 -211411089 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 252 0 0 0 chr3 6626571 6626599 -211410559 + (TA)n Simple_repeat Simple_repeat 1 28 0 2064 128 0 10 chr3 6626786 6627098 -211410060 - AluSg SINE Alu -1 309 1 1613 169 7 23 chr3 6627101 6627403 -211409755 - AluJb SINE Alu -15 297 1 444 277 98 27 chr3 6627705 6627889 -211409269 + MIR SINE MIR 66 262 0 802 141 8 0 chr3 6627995 6628123 -211409035 - AluJ SINE Alu -173 129 1 1504 106 78 78 chr3 6628203 6628496 -211408662 - AluSx SINE Alu -18 294 2 435 271 21 14 chr3 6629137 6629281 -211407877 - MIR SINE MIR 0 262 118 2284 80 0 7 chr3 6629281 6629581 -211407577 - AluSx SINE Alu -13 299 2 328 209 60 11 chr3 6629593 6629683 -211407475 + MLT1J LTR MaLR 416 615 0 2238 148 50 5 chr3 6629877 6630277 -211406881 - L1MC1 LINE L1 -5 6328 5911 2093 132 0 0 chr3 6630287 6630591 -211406567 - AluSx SINE Alu -8 304 1 860 272 158 14 chr3 6630605 6630973 -211406185 - LTR33 LTR ERVL -52 469 49 1012 167 9 79 chr3 6630980 6631207 -211405951 - AluJo SINE Alu -101 211 1 2029 113 3 3 chr3 6631398 6631690 -211405468 - AluSg SINE Alu -18 292 1 1395 168 40 37 chr3 6632051 6632348 -211404810 - AluJo SINE Alu -14 298 1 697 318 55 4 chr3 6632359 6632595 -211404563 - MIR SINE MIR -2 260 13 27 62 0 0 chr3 6633070 6633118 -211404040 + AT_rich Low_complexity Low_complexity 1 48 0 284 250 261 11 chr3 6633400 6633488 -211403670 - MIR SINE MIR -61 147 38 1192 253 48 24 chr3 6633577 6633913 -211403245 - ERVL LTR ERVL -2323 3441 3098 443 267 0 0 chr3 6633977 6634082 -211403076 + HERVL LTR ERVL 5269 5373 -281 593 181 0 0 chr3 6634083 6634177 -211402981 + AluJb SINE Alu 177 270 -42 2267 92 3 10 chr3 6635256 6635570 -211401588 + AluSp SINE Alu 2 313 0 1022 262 148 10 chr3 6635674 6636098 -211401060 + MLT1J2 LTR MaLR 1 450 0 722 266 28 28 chr3 6636221 6636435 -211400723 + MIR SINE MIR 1 214 -48 713 112 70 2 chr3 6637559 6637702 -211399456 - L1MA5A LINE L1 -2 6301 6143 663 132 18 9 chr3 6637702 6637816 -211399342 - AluSp/q SINE Alu -23 290 176 21 57 0 0 chr3 6640270 6640305 -211396853 + AT_rich Low_complexity Low_complexity 1 35 0 1999 126 7 0 chr3 6640357 6640650 -211396508 - AluSx SINE Alu -17 295 1 26 0 0 0 chr3 6641814 6641840 -211395318 + AT_rich Low_complexity Low_complexity 1 26 0 1698 132 28 28 chr3 6641907 6642196 -211394962 - AluJo SINE Alu -23 289 1 364 300 111 37 chr3 6642200 6642390 -211394768 - L1ME4a LINE L1 -122 5999 5796 289 235 41 20 chr3 6642452 6642550 -211394608 - L1ME4a LINE L1 -466 5655 5556 236 350 12 0 chr3 6642634 6642714 -211394444 - MIR SINE MIR -113 149 69 2150 76 0 10 chr3 6642771 6643060 -211394098 - L1MA1 LINE L1 -1 6301 6016 619 242 124 0 chr3 6643505 6643658 -211393500 + MIR SINE MIR 66 237 -25 183 42 0 0 chr3 6644537 6644561 -211392597 + (A)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr3 6644596 6644619 -211392539 + (TG)n Simple_repeat Simple_repeat 2 24 0 441 0 0 0 chr3 6644692 6644741 -211392417 + (TG)n Simple_repeat Simple_repeat 2 50 0 436 241 20 79 chr3 6646598 6646801 -211390357 - L1MC5 LINE L1 -34 7927 7737 374 298 38 15 chr3 6647911 6648042 -211389116 - MIR SINE MIR -12 250 117 186 227 0 91 chr3 6648720 6648786 -211388372 - L2 LINE L2 -216 3056 2997 193 211 193 0 chr3 6648957 6649014 -211388144 + L2 LINE L2 3204 3271 -1 384 293 173 42 chr3 6649254 6649445 -211387713 + MIR SINE MIR 44 259 -3 311 259 0 0 chr3 6649925 6649983 -211387175 + L2 LINE L2 3215 3272 0 328 85 0 0 chr3 6650530 6650577 -211386581 - L1MB7 LINE L1 -8 6176 6130 537 323 12 6 chr3 6650651 6650818 -211386340 - MER91A DNA MER1_type -27 169 2 455 253 58 93 chr3 6652068 6652215 -211384943 + L1ME3 LINE L1 5946 6084 -78 2074 132 21 6 chr3 6652215 6652548 -211384610 + L1PA13 LINE L1 5826 6163 0 455 253 58 93 chr3 6652548 6652625 -211384533 + L1ME3 LINE L1 6084 6162 0 473 178 0 0 chr3 6653784 6653857 -211383301 - MER2 DNA MER2_type 0 345 273 185 294 39 0 chr3 6653876 6653927 -211383231 - MIR SINE MIR -133 129 77 1112 269 128 39 chr3 6653980 6654506 -211382652 - MLT1H1 LTR MaLR -5 548 1 408 247 33 60 chr3 6656495 6656645 -211380513 + MIR SINE MIR 28 173 -89 764 174 0 0 chr3 6656957 6657078 -211380080 - FLAM_A SINE Alu -11 122 2 31 0 0 0 chr3 6657081 6657112 -211380046 + AT_rich Low_complexity Low_complexity 1 31 0 369 43 0 0 chr3 6657326 6657373 -211379785 - MADE1 DNA Mariner 0 80 34 185 105 0 53 chr3 6657474 6657512 -211379646 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 2028 91 0 4 chr3 6658136 6658451 -211378707 - AluSx SINE Alu 0 320 7 818 250 18 14 chr3 6658759 6658979 -211378179 + MER58A DNA MER1_type 1 221 -3 792 181 11 27 chr3 6659182 6659533 -211377625 + CT-rich Low_complexity Low_complexity 1 345 0 396 316 100 40 chr3 6659891 6660290 -211376868 + L2 LINE L2 2107 2529 -785 259 341 12 0 chr3 6660347 6660432 -211376726 - MIR SINE MIR -169 93 8 184 222 44 0 chr3 6660479 6660524 -211376634 + L2 LINE L2 2601 2647 -667 216 267 78 43 chr3 6660922 6661038 -211376120 + L2 LINE L2 3150 3269 -3 203 304 11 76 chr3 6661046 6661138 -211376020 + MIR SINE MIR 158 243 -19 371 313 9 0 chr3 6661585 6661700 -211375458 - MIR SINE MIR -92 170 55 412 195 114 57 chr3 6662431 6662554 -211374604 - MIR3 SINE MIR -69 139 10 189 107 0 0 chr3 6665049 6665077 -211372081 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr3 6666459 6666482 -211370676 + AT_rich Low_complexity Low_complexity 1 23 0 608 233 0 0 chr3 6667004 6667120 -211370038 - FLAM_A SINE Alu -17 116 1 531 282 62 66 chr3 6667138 6667443 -211369715 - L2 LINE L2 -19 3253 2950 240 289 72 40 chr3 6668131 6668283 -211368875 - MIR SINE MIR -34 228 72 189 0 0 0 chr3 6669492 6669513 -211367645 + (T)n Simple_repeat Simple_repeat 1 21 0 815 129 0 0 chr3 6669727 6669851 -211367307 - FLAM_C SINE Alu -9 134 11 2671 83 0 0 chr3 6670647 6670998 -211366160 - L1PA14 LINE L1 0 6161 5811 427 326 7 28 chr3 6671351 6671492 -211365666 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 6671875 6672095 -211365063 + MIR SINE MIR 8 245 -17 471 298 7 28 chr3 6673042 6673183 -211363975 + MIR3 SINE MIR 10 147 -61 403 163 12 12 chr3 6673817 6673897 -211363261 + MIR3 SINE MIR 82 161 -47 229 277 11 96 chr3 6674440 6674534 -211362624 + MIR3 SINE MIR 79 167 -41 519 217 32 106 chr3 6674754 6674838 -211362320 - L1ME2 LINE L1 -9 6155 6066 1804 194 77 58 chr3 6674838 6675334 -211361824 - MLT1D LTR MaLR 0 505 1 519 217 32 106 chr3 6675334 6675455 -211361703 - L1ME2 LINE L1 -98 6066 5964 2342 132 71 0 chr3 6675455 6675848 -211361310 - L1PA16 LINE L1 -5 6161 5741 252 186 0 34 chr3 6676493 6676552 -211360606 - FLAM SINE Alu -1 132 76 588 224 109 21 chr3 6676638 6676830 -211360328 - MIR SINE MIR -53 209 1 357 339 0 0 chr3 6676972 6677081 -211360077 - MIR SINE MIR -147 115 7 4086 84 20 32 chr3 6677094 6677691 -211359467 + L1PA10 LINE L1 5576 6165 -3 513 331 118 10 chr3 6678700 6679014 -211358144 - L2 LINE L2 0 3313 2966 705 118 0 0 chr3 6679261 6679371 -211357787 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 207 0 0 0 chr3 6679387 6679410 -211357748 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 918 155 94 75 chr3 6681541 6681754 -211355404 - MER20 DNA MER1_type -2 217 1 262 271 0 0 chr3 6681784 6681843 -211355315 - MIR SINE MIR 0 262 204 1205 168 72 50 chr3 6681867 6682129 -211355029 - AluJo SINE Alu -38 274 7 741 288 14 9 chr3 6682132 6682347 -211354811 - MIR SINE MIR -42 220 5 289 247 39 13 chr3 6682345 6682422 -211354736 + MIR SINE MIR 156 234 -28 * 234 162 0 0 chr3 6682513 6682550 -211354608 - MIR SINE MIR -59 149 113 2005 115 34 0 chr3 6683221 6683517 -211353641 - AluSx SINE Alu -1 311 6 187 209 0 0 chr3 6683778 6683821 -211353337 + L2 LINE L2 3270 3312 -1 358 219 289 0 chr3 6683982 6684096 -211353062 - MIR SINE MIR -108 154 8 256 284 68 0 chr3 6685585 6685659 -211351499 - L2 LINE L2 -186 3086 3008 185 319 0 0 chr3 6687319 6687388 -211349770 - L2 LINE L2 -9 3263 3195 570 279 132 6 chr3 6688486 6688770 -211348388 - L1MC4a LINE L1 -316 5805 5561 2032 99 31 7 chr3 6690400 6690692 -211346466 - AluSg SINE Alu -11 299 1 493 72 14 0 chr3 6694132 6694201 -211342957 + MADE1 DNA Mariner 1 70 -10 441 39 0 0 chr3 6694195 6694247 -211342911 - MADE1 DNA Mariner -27 53 2 * 630 262 126 19 chr3 6694340 6694554 -211342604 + MIR SINE MIR 14 250 -12 392 241 66 99 chr3 6695933 6696026 -211341132 + MIR SINE MIR 52 147 -115 1836 147 3 3 chr3 6696026 6696312 -211340846 + AluJb SINE Alu 4 289 -23 392 241 66 99 chr3 6696312 6696430 -211340728 + MIR SINE MIR 147 256 -6 300 230 40 14 chr3 6696757 6696831 -211340327 + MER117 DNA MER1_type 44 119 -78 366 302 82 80 chr3 6698322 6698886 -211338272 - L2 LINE L2 0 3272 2702 22 0 0 0 chr3 6698889 6698911 -211338247 + AT_rich Low_complexity Low_complexity 1 22 0 1977 106 10 51 chr3 6698921 6699232 -211337926 + AluSx SINE Alu 1 298 -14 343 250 92 58 chr3 6699479 6699599 -211337559 - MIR SINE MIR -114 148 25 378 327 31 25 chr3 6699983 6700142 -211337016 - MIR3 SINE MIR -13 195 36 751 237 72 10 chr3 6701307 6701501 -211335657 - MER3 DNA MER1_type -1 208 3 701 117 0 0 chr3 6701585 6701688 -211335470 + AluSg/x SINE Alu 208 310 -2 23 0 0 0 chr3 6701712 6701735 -211335423 + AT_rich Low_complexity Low_complexity 1 23 0 1862 123 6 43 chr3 6701735 6702059 -211335099 + AluSx SINE Alu 1 312 0 2225 110 0 0 chr3 6703930 6704240 -211332918 - AluSg SINE Alu 0 310 1 277 263 140 9 chr3 6704535 6704649 -211332509 + MIR3 SINE MIR 37 165 -43 2015 146 33 9 chr3 6705605 6705934 -211331224 - MER1B DNA MER1_type 0 337 1 1809 190 103 38 chr3 6706197 6706671 -211330487 - MLT1D LTR MaLR 0 505 1 2238 203 67 54 chr3 6706680 6707236 -211329922 - MLT1F1 LTR MaLR -4 563 1 285 216 135 0 chr3 6707726 6707800 -211329358 - L1MC5 LINE L1 -70 7891 7808 303 215 114 25 chr3 6708078 6708157 -211329001 + MIR3 SINE MIR 114 199 -9 491 329 7 0 chr3 6709758 6709895 -211327263 - MIR3 SINE MIR -41 167 30 223 309 0 37 chr3 6711046 6711127 -211326031 + MIR SINE MIR 31 108 -100 716 186 127 56 chr3 6711991 6712330 -211324828 - L1MC5 LINE L1 -34 7927 7565 3565 199 36 26 chr3 6712480 6713411 -211323747 + L1ME1 LINE L1 5196 6134 -32 233 304 180 12 chr3 6713412 6713550 -211323608 + MIR SINE MIR 7 164 -44 337 305 108 89 chr3 6714316 6714585 -211322573 - L2 LINE L2 -85 3187 2914 1946 141 0 20 chr3 6715804 6716131 -211321027 + AluSx SINE Alu 1 312 0 537 252 41 0 chr3 6716412 6716559 -211320599 + MER103 DNA DNA 2 154 -12 216 227 0 30 chr3 6716820 6716863 -211320295 + GA-rich Low_complexity Low_complexity 3 45 -21 1814 143 10 22 chr3 6716863 6717177 -211319981 + AluSx SINE Alu 1 310 -2 216 227 0 30 chr3 6717177 6717199 -211319959 + GA-rich Low_complexity Low_complexity 45 66 0 1707 142 184 6 chr3 6717267 6717626 -211319532 - MSTA LTR MaLR -2 426 4 2043 106 3 13 chr3 6718192 6718494 -211318664 - AluSx SINE Alu -13 299 1 898 289 100 22 chr3 6719388 6719797 -211317361 - MLT1K LTR MaLR -4 584 144 423 288 42 8 chr3 6721738 6721856 -211315302 + MIR SINE MIR 101 222 -40 263 247 56 34 chr3 6722382 6722471 -211314687 - L2 LINE L2 -29 3243 3153 487 262 48 12 chr3 6722530 6722701 -211314457 - MIR SINE MIR -69 139 10 820 335 67 23 chr3 6723268 6723743 -211313415 + L1ME4a LINE L1 5319 5814 -307 342 184 87 0 chr3 6723879 6723982 -211313176 + L1ME4a LINE L1 6008 6119 -2 517 269 60 7 chr3 6724366 6724515 -211312643 - MIR3 SINE MIR -15 193 37 524 251 134 67 chr3 6724917 6725140 -211312018 - MIR SINE MIR -1 261 24 384 273 132 57 chr3 6726022 6726249 -211310909 + L1ME LINE L1 5547 5790 -331 1708 171 10 3 chr3 6726362 6726660 -211310498 - AluJo SINE Alu -12 300 1 240 304 14 0 chr3 6727745 6727814 -211309344 - L2 LINE L2 -8 3264 3195 298 308 183 23 chr3 6727970 6728233 -211308925 - L2 LINE L2 -349 2965 2661 510 307 42 16 chr3 6729743 6729932 -211307226 + MIR SINE MIR 47 240 -22 4127 185 127 155 chr3 6730194 6730308 -211306850 - L1MC4 LINE L1 0 8042 7926 279 0 0 0 chr3 6730308 6730339 -211306819 + (CA)n Simple_repeat Simple_repeat 2 32 0 4127 185 127 155 chr3 6730339 6730772 -211306386 - L1MC4 LINE L1 -116 7926 7482 1348 159 4 17 chr3 6730772 6731011 -211306147 - AluSq SINE Alu -77 236 1 4127 185 127 155 chr3 6731011 6731977 -211305181 - L1MC4 LINE L1 -560 7482 6340 314 317 169 6 chr3 6732066 6732249 -211304909 - MIR SINE MIR -49 213 1 510 250 147 6 chr3 6733671 6733827 -211303331 - MER5A DNA MER1_type -3 186 9 321 260 114 16 chr3 6734195 6734318 -211302840 - MIR SINE MIR -113 149 15 306 230 135 48 chr3 6735778 6735904 -211301254 + MER117 DNA MER1_type 1 137 -60 282 282 19 19 chr3 6736349 6736452 -211300706 + MIR SINE MIR 36 138 -70 2132 141 34 44 chr3 6737698 6738109 -211299049 + L1MA4A LINE L1 5715 6121 -182 508 209 0 0 chr3 6738099 6738212 -211298946 + L1MA4A LINE L1 6044 6279 0 * 536 297 60 6 chr3 6738602 6738784 -211298374 - MIR SINE MIR -49 213 22 331 324 19 9 chr3 6741900 6742005 -211295153 + MIR3 SINE MIR 89 194 -14 182 219 0 0 chr3 6743429 6743461 -211293697 - MIR SINE MIR -72 190 159 1580 193 38 41 chr3 6743840 6744233 -211292925 - L1MC2 LINE L1 -5 6339 5948 2248 90 0 28 chr3 6744277 6744598 -211292560 - AluSx SINE Alu 0 312 1 357 132 0 0 chr3 6745415 6745454 -211291704 + (TC)n Simple_repeat Simple_repeat 1 42 -26 210 37 0 0 chr3 6745454 6745481 -211291677 + (CA)n Simple_repeat Simple_repeat 1 27 0 357 132 0 0 chr3 6745481 6745509 -211291649 + (TC)n Simple_repeat Simple_repeat 41 68 0 1478 118 113 17 chr3 6746730 6746968 -211290190 + AluSx SINE Alu 33 293 -19 279 333 42 33 chr3 6747353 6747473 -211289685 + L2 LINE L2 3151 3271 -1 1689 174 14 3 chr3 6748221 6748515 -211288643 - AluJo SINE Alu -15 297 1 205 267 0 0 chr3 6748542 6748587 -211288571 + L2 LINE L2 3182 3226 -87 182 245 20 0 chr3 6748626 6748675 -211288483 + L2 LINE L2 3204 3253 -60 665 225 116 0 chr3 6749673 6749846 -211287312 + MER58A DNA MER1_type 30 222 -2 1454 116 39 27 chr3 6750508 6750766 -211286392 + L1MB3 LINE L1 5923 6183 0 216 0 0 0 chr3 6751058 6751082 -211286076 + (T)n Simple_repeat Simple_repeat 1 24 0 413 303 8 16 chr3 6751725 6751847 -211285311 - L2 LINE L2 -1 3271 3151 2365 91 3 0 chr3 6753369 6753666 -211283492 + AluSp SINE Alu 2 299 -14 207 300 14 43 chr3 6753687 6753757 -211283401 - MIR3 SINE MIR -33 175 108 261 0 0 0 chr3 6754352 6754381 -211282777 + (T)n Simple_repeat Simple_repeat 1 29 0 440 302 37 135 chr3 6755782 6756130 -211281028 - L2 LINE L2 -1 3271 2958 2036 123 38 0 chr3 6756686 6756979 -211280179 - AluSx SINE Alu -8 304 1 189 0 0 0 chr3 6757397 6757418 -211279740 + (T)n Simple_repeat Simple_repeat 1 21 0 1014 174 56 0 chr3 6757753 6757931 -211279227 + MER5A DNA MER1_type 1 188 -1 1708 163 23 23 chr3 6758446 6758747 -211278411 - AluJb SINE Alu -11 301 1 282 279 123 0 chr3 6759328 6759450 -211277708 - MIR SINE MIR -27 235 99 23 0 0 0 chr3 6761787 6761810 -211275348 + AT_rich Low_complexity Low_complexity 1 23 0 274 185 46 46 chr3 6764156 6764221 -211272937 - MIR SINE MIR -63 145 81 262 397 64 14 chr3 6765722 6765941 -211271217 + MIR SINE MIR 2 231 -31 2146 148 0 0 chr3 6766287 6766590 -211270568 + AluSx SINE Alu 1 303 -9 3917 144 29 64 chr3 6766826 6766996 -211270162 + LTR39 LTR ERV1 1 175 -608 1709 141 57 4 chr3 6766996 6767338 -211269820 + AluJb SINE Alu 7 362 0 3917 144 29 64 chr3 6767338 6767967 -211269191 + LTR39 LTR ERV1 175 773 -10 201 305 51 76 chr3 6768560 6768612 -211268546 - MIR SINE MIR -58 150 98 2346 105 3 6 chr3 6768612 6768925 -211268233 + AluSp SINE Alu 1 312 -1 201 305 51 76 chr3 6768925 6768990 -211268168 - MIR SINE MIR -110 98 36 2505 134 38 14 chr3 6769924 6770342 -211266816 + MSTA LTR MaLR 1 428 0 780 229 62 5 chr3 6770342 6770617 -211266541 + L1MC/D LINE L1 5520 5810 -372 1647 149 41 17 chr3 6770880 6771324 -211265834 - MLT1D LTR MaLR 0 505 1 249 33 0 0 chr3 6771587 6771617 -211265541 + (CA)n Simple_repeat Simple_repeat 2 31 0 271 138 52 17 chr3 6771842 6771900 -211265258 - L1M LINE L1 -797 5369 5310 502 140 82 148 chr3 6771974 6772092 -211265066 - L1M4 LINE L1 -871 5275 5182 826 154 23 0 chr3 6772092 6772222 -211264936 - FLAM_C SINE Alu 0 133 1 502 140 82 148 chr3 6772222 6772360 -211264798 - L1M4 LINE L1 -964 5182 5036 845 184 0 26 chr3 6772360 6772550 -211264608 + MER3 DNA MER1_type 1 185 -24 998 205 19 19 chr3 6772567 6772835 -211264323 - L1M4 LINE L1 -1103 5043 4776 743 208 0 0 chr3 6772842 6772991 -211264167 + L1MB1 LINE L1 4843 4991 -1155 658 157 0 5 chr3 6772991 6773153 -211264005 + AluJo SINE Alu 84 310 -2 4504 147 26 57 chr3 6773155 6773513 -211263645 + L1MB1 LINE L1 4980 5347 -821 1892 164 0 16 chr3 6773513 6773818 -211263340 + AluJb SINE Alu 4 303 -9 4504 147 26 57 chr3 6773818 6774642 -211262516 + L1MB1 LINE L1 5347 6145 -23 7205 228 82 23 chr3 6774668 6775183 -211261975 - L1M4 LINE L1 -1379 4767 4283 2224 73 0 0 chr3 6775183 6775456 -211261702 - AluY SINE Alu -38 273 1 7205 228 82 23 chr3 6775456 6776088 -211261070 - L1M4 LINE L1 -1863 4283 3689 1703 180 3 40 chr3 6776088 6776410 -211260748 - AluJo SINE Alu -2 310 1 7205 228 82 23 chr3 6776410 6777700 -211259458 - L1M4 LINE L1 -2457 3689 2187 679 307 55 71 chr3 6777958 6778411 -211258747 + L2 LINE L2 2224 2669 -645 342 320 76 100 chr3 6778448 6778857 -211258301 + L2 LINE L2 2812 3210 -62 1360 131 57 4 chr3 6779733 6779977 -211257181 - Tigger2 DNA MER2_type 0 2718 2462 3827 108 49 88 chr3 6780020 6780794 -211256364 - Tigger2 DNA MER2_type -1974 744 1 394 259 86 123 chr3 6782675 6783080 -211254078 + L1M2 LINE L1 740 1129 -5720 2142 114 10 0 chr3 6783521 6783818 -211253340 - AluSx SINE Alu -12 300 1 1840 154 3 28 chr3 6783843 6784162 -211252996 - AluJo SINE Alu -1 311 1 2075 135 3 0 chr3 6785003 6785300 -211251858 - AluSx SINE Alu -14 298 1 282 326 122 7 chr3 6786357 6786504 -211250654 - MIR3 SINE MIR -21 187 24 329 241 169 42 chr3 6786590 6786756 -211250402 + MLT1H1 LTR MaLR 49 235 -320 1373 80 6 6 chr3 6786760 6786936 -211250222 + AluSp SINE Alu 1 176 -137 207 0 0 0 chr3 6786940 6786963 -211250195 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2301 115 0 0 chr3 6787057 6787369 -211249789 - AluSx SINE Alu 0 312 1 267 196 0 0 chr3 6787379 6787430 -211249728 + MLT1H1 LTR MaLR 430 480 -75 832 243 111 98 chr3 6787707 6787775 -211249383 - MLT1G1 LTR MaLR 0 595 529 733 124 83 0 chr3 6787775 6787896 -211249262 - FLAM_C SINE Alu -2 131 1 832 243 111 98 chr3 6787896 6788411 -211248747 - MLT1G1 LTR MaLR -66 529 4 233 263 38 100 chr3 6790516 6790676 -211246482 + MIR SINE MIR 100 249 -13 * 442 273 180 3 chr3 6790658 6790831 -211246327 - MIR SINE MIR -49 213 19 2300 77 0 0 chr3 6790951 6791224 -211245934 + AluSc SINE Alu 25 297 -12 5276 29 0 0 chr3 6792002 6792615 -211244543 + L1PA3 LINE L1 5540 6152 -3 613 117 19 19 chr3 6792922 6793025 -211244133 - U13 snRNA snRNA -1 103 1 2229 122 0 0 chr3 6793455 6793750 -211243408 + AluSx SINE Alu 1 295 -17 216 0 0 0 chr3 6793948 6793972 -211243186 + (A)n Simple_repeat Simple_repeat 1 24 0 651 90 34 0 chr3 6794367 6794456 -211242702 - FLAM_C SINE Alu -26 117 26 356 317 96 72 chr3 6796208 6796709 -211240449 + L1MC4a LINE L1 4810 5322 -824 1072 228 153 50 chr3 6796740 6797197 -211239961 + L1MC4a LINE L1 5437 5940 -1868 1820 175 6 19 chr3 6797295 6797609 -211239549 + AluJb SINE Alu 1 310 -2 273 253 82 123 chr3 6798532 6798678 -211238480 + L2 LINE L2 3133 3272 0 297 140 40 0 chr3 6800203 6800253 -211236905 + FLAM SINE Alu 78 129 -4 207 383 103 3 chr3 6800555 6800845 -211236313 + L2 LINE L2 2331 2649 -665 1891 149 20 0 chr3 6800869 6801165 -211235993 - AluJb SINE Alu -10 302 1 225 350 137 38 chr3 6801384 6801698 -211235460 + L2 LINE L2 2928 3272 0 27 62 0 0 chr3 6802033 6802081 -211235077 + AT_rich Low_complexity Low_complexity 1 48 0 1589 187 32 18 chr3 6802261 6802539 -211234619 + AluJo SINE Alu 1 282 -30 398 270 22 58 chr3 6802556 6802693 -211234465 - MER5A DNA MER1_type -49 140 9 208 234 0 43 chr3 6802688 6802735 -211234423 - L3 LINE CR1 -17 1560 1516 * 283 274 53 32 chr3 6802737 6802832 -211234326 + MER5A DNA MER1_type 74 170 -19 194 311 66 57 chr3 6802738 6802860 -211234298 - MER5A DNA MER1_type -63 126 4 * 2518 211 29 49 chr3 6802942 6803491 -211233667 + MLT1F LTR MaLR 5 542 0 587 288 27 68 chr3 6804871 6805053 -211232105 + MIR SINE MIR 14 187 -75 2174 111 16 7 chr3 6805053 6805360 -211231798 + AluSx SINE Alu 1 310 -2 587 288 27 68 chr3 6805360 6805399 -211231759 + MIR SINE MIR 187 226 -36 813 170 0 15 chr3 6806230 6806365 -211230793 + FLAM_C SINE Alu 1 133 0 483 281 98 41 chr3 6806700 6807188 -211229970 + L1M4 LINE L1 4487 5002 -1144 1866 117 38 0 chr3 6807308 6807574 -211229584 + AluSq SINE Alu 1 276 -37 5862 89 11 39 chr3 6807619 6808497 -211228661 + L1PA14 LINE L1 5308 6161 0 573 189 53 95 chr3 6808678 6808703 -211228455 + MER58B DNA MER1_type 180 204 -2216 2069 142 0 13 chr3 6808703 6809012 -211228146 + AluSx SINE Alu 2 306 -6 573 189 53 95 chr3 6809012 6809155 -211228003 + MER58B DNA MER1_type 204 341 0 1393 242 79 12 chr3 6809196 6809673 -211227485 + MLT1E LTR MaLR 55 593 0 1926 120 11 14 chr3 6809789 6810152 -211227006 + AluSx SINE Alu 2 363 0 622 252 68 68 chr3 6810199 6810427 -211226731 + MLT1L LTR MaLR 327 557 -58 917 229 88 5 chr3 6810427 6810632 -211226526 + MER58A DNA MER1_type 2 223 -1 622 252 68 68 chr3 6810632 6810681 -211226477 + MLT1L LTR MaLR 556 604 -11 2009 171 16 30 chr3 6810751 6811119 -211226039 - MLT1A1 LTR MaLR -2 363 1 1801 205 123 30 chr3 6811146 6811643 -211225515 - L1ME3A LINE L1 -10 6160 5618 2275 102 0 3 chr3 6811755 6812050 -211225108 + AluSx SINE Alu 1 294 -18 1920 140 48 0 chr3 6812059 6812352 -211224806 + AluSx SINE Alu 1 307 -5 210 143 0 0 chr3 6812352 6812387 -211224771 + (GA)n Simple_repeat Simple_repeat 1 35 0 288 111 0 0 chr3 6813281 6813326 -211223832 + (GA)n Simple_repeat Simple_repeat 2 46 0 439 280 21 21 chr3 6814029 6814172 -211222986 - MIR SINE MIR -82 180 38 618 163 162 23 chr3 6814919 6815078 -211222080 - MER58C DNA MER1_type 0 215 31 1705 136 41 14 chr3 6815480 6815774 -211221384 - AluJb SINE Alu -10 302 1 2191 93 21 0 chr3 6815932 6816212 -211220946 + AluSc SINE Alu 8 293 -16 1196 164 0 29 chr3 6816957 6817165 -211219993 + AluJo SINE Alu 83 284 -28 441 0 0 0 chr3 6817169 6817218 -211219940 + (GA)n Simple_repeat Simple_repeat 2 50 0 29 60 0 0 chr3 6817242 6817292 -211219866 + AT_rich Low_complexity Low_complexity 1 50 0 313 149 27 54 chr3 6817647 6817721 -211219437 - MER116 DNA Mariner 0 80 9 630 214 0 0 chr3 6818026 6818129 -211219029 - FLAM_A SINE Alu -36 106 4 343 259 37 44 chr3 6818217 6818236 -211218922 - MIR SINE MIR 0 262 244 1294 160 173 30 chr3 6818236 6818536 -211218622 + MER2 DNA MER2_type 2 344 0 343 259 37 44 chr3 6818536 6818651 -211218507 - MIR SINE MIR -18 244 129 233 296 68 0 chr3 6818887 6818975 -211218183 + MIR SINE MIR 84 177 -85 1880 170 0 3 chr3 6820020 6820331 -211216827 + AluJb SINE Alu 1 310 -2 254 288 0 0 chr3 6821098 6821164 -211215994 + (TA)n Simple_repeat Simple_repeat 1 66 0 1721 169 10 23 chr3 6821177 6821485 -211215673 - AluJo SINE Alu -8 304 1 214 313 40 30 chr3 6822348 6822447 -211214711 - MIR SINE MIR -64 144 45 472 291 86 29 chr3 6822959 6823134 -211214024 + MIR3 SINE MIR 16 200 -8 282 287 21 11 chr3 6823389 6823483 -211213675 - MLT1K LTR MaLR -36 552 458 257 270 108 0 chr3 6823628 6823739 -211213419 - MLT1L LTR MaLR -310 305 183 227 241 37 0 chr3 6823778 6823832 -211213326 - MLT1L LTR MaLR -418 197 142 195 42 0 0 chr3 6824019 6824043 -211213115 + (GAATG)n Simple_repeat Simple_repeat 2 25 0 182 246 311 16 chr3 6824871 6824932 -211212226 - L2 LINE L2 -87 3185 3107 1985 38 0 0 chr3 6825049 6825288 -211211870 - L1P LINE L1 -1626 4520 4282 242 303 53 13 chr3 6825332 6825408 -211211750 - L2 LINE L2 -200 3072 2994 2020 135 7 0 chr3 6826766 6827070 -211210088 + AluSx SINE Alu 5 310 -2 2078 117 85 70 chr3 6827364 6827403 -211209755 - MSTA LTR MaLR 0 428 391 2268 103 3 3 chr3 6827403 6827704 -211209454 + AluSx SINE Alu 1 301 -11 2078 117 85 70 chr3 6827704 6827738 -211209420 - MSTA LTR MaLR -37 391 359 2104 131 0 3 chr3 6827738 6828028 -211209130 + AluSx SINE Alu 1 289 -23 2078 117 85 70 chr3 6828028 6828365 -211208793 - MSTA LTR MaLR -69 359 11 856 257 10 10 chr3 6829237 6829443 -211207715 - MLT1A1 LTR MaLR 0 365 160 2224 121 0 0 chr3 6829463 6829761 -211207397 - AluSx SINE Alu -14 298 1 448 52 0 17 chr3 6829761 6829819 -211207339 - MSTC LTR MaLR -371 57 1 2566 115 54 79 chr3 6829952 6830228 -211206930 - MLT1C LTR MaLR 0 467 207 1549 178 3 53 chr3 6830228 6830549 -211206609 - AluJo SINE Alu -7 305 1 2566 115 54 79 chr3 6830549 6830751 -211206407 - MLT1C LTR MaLR -260 207 1 43863 32 21 1 chr3 6830963 6836996 -211200162 + L1HS LINE L1 1 6155 0 24 0 0 0 chr3 6836996 6837020 -211200138 + AT_rich Low_complexity Low_complexity 1 24 0 433 246 84 26 chr3 6837072 6837226 -211199932 - MIR3 SINE MIR -1 207 37 511 254 89 78 chr3 6837523 6838129 -211199029 + L1MC4 LINE L1 7229 7827 -215 477 137 0 0 chr3 6838129 6838202 -211198956 + L1PB4 LINE L1 6070 6142 -14 511 254 89 78 chr3 6838202 6838214 -211198944 + L1MC4 LINE L1 7827 7837 -205 855 172 0 0 chr3 6838214 6838342 -211198816 + FLAM_C SINE Alu 1 128 -5 511 254 89 78 chr3 6838342 6838506 -211198652 + L1MC4 LINE L1 7837 8037 -5 279 0 0 0 chr3 6838596 6838627 -211198531 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2375 101 0 3 chr3 6838637 6838945 -211198213 - AluSg SINE Alu -3 307 1 423 249 26 74 chr3 6839075 6839264 -211197894 + L1MC4a LINE L1 5750 5929 -1879 2616 189 37 2 chr3 6839332 6839851 -211197307 + L1MB7 LINE L1 4012 4548 -1598 863 123 23 8 chr3 6839857 6839987 -211197171 - FLAM_C SINE Alu -11 132 1 4326 183 56 46 chr3 6839988 6841621 -211195537 + L1MB7 LINE L1 4540 6179 -5 360 0 0 0 chr3 6842193 6842233 -211194925 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 97 0 0 chr3 6842233 6842264 -211194894 + (GA)n Simple_repeat Simple_repeat 2 32 0 491 208 196 23 chr3 6842879 6843052 -211194106 - MLT1H LTR MaLR -1 548 346 2173 109 10 0 chr3 6843177 6843480 -211193678 - AluY SINE Alu -5 306 1 2482 218 25 25 chr3 6844169 6844476 -211192682 - L1MB8 LINE L1 -7 6171 5862 1980 127 39 0 chr3 6844476 6844760 -211192398 - AluJb SINE Alu -17 295 1 2482 218 25 25 chr3 6844760 6845061 -211192097 - L1MB8 LINE L1 -315 5863 5563 1545 241 129 33 chr3 6845912 6846463 -211190695 + L1MC4 LINE L1 7160 7763 -279 788 194 0 15 chr3 6846470 6846604 -211190554 + FLAM_C SINE Alu 2 133 0 391 208 132 0 chr3 6846746 6846876 -211190282 + L1MD3 LINE L1 7883 8042 0 1471 141 53 46 chr3 6846892 6847176 -211189982 + AluJb SINE Alu 1 286 -26 270 115 0 0 chr3 6847176 6847228 -211189930 + (CATA)n Simple_repeat Simple_repeat 4 55 0 651 263 26 52 chr3 6847238 6847470 -211189688 + L1ME3 LINE L1 5936 6161 -1 2338 97 0 0 chr3 6847883 6848182 -211188976 + AluSc SINE Alu 1 299 -10 180 111 0 0 chr3 6848292 6848319 -211188839 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 606 174 147 0 chr3 6848447 6848556 -211188602 + FLAM_A SINE Alu 1 125 -8 693 258 32 81 chr3 6848616 6848864 -211188294 + MLT1J LTR MaLR 236 471 -40 2325 161 45 7 chr3 6848956 6849398 -211187760 + L1MB3 LINE L1 5725 6183 0 38 0 0 0 chr3 6849398 6849436 -211187722 + AT_rich Low_complexity Low_complexity 1 38 0 2135 134 0 0 chr3 6849442 6849748 -211187410 + AluSx SINE Alu 1 306 -6 1123 261 90 23 chr3 6849756 6850321 -211186837 + L2 LINE L2 2712 3311 -2 292 293 116 56 chr3 6851227 6851459 -211185699 - L2 LINE L2 -882 2432 2187 784 311 91 40 chr3 6851508 6852152 -211185006 + L2 LINE L2 2606 3280 -33 27 62 0 0 chr3 6852165 6852213 -211184945 + AT_rich Low_complexity Low_complexity 1 48 0 544 328 76 4 chr3 6852303 6852565 -211184593 - L2 LINE L2 -1163 2151 1871 719 234 224 66 chr3 6852686 6852848 -211184310 - MLT1H LTR MaLR 0 542 407 897 272 9 9 chr3 6852848 6853072 -211184086 - MER58A DNA MER1_type 0 224 1 719 234 224 66 chr3 6853072 6853350 -211183808 - MLT1H LTR MaLR -135 407 32 2381 82 0 22 chr3 6853525 6853840 -211183318 + AluSq SINE Alu 1 308 -5 2237 130 0 9 chr3 6854448 6854763 -211182395 + AluSq SINE Alu 1 312 -1 1009 172 18 0 chr3 6854776 6854939 -211182219 + FAM SINE Alu 1 166 -9 910 164 0 8 chr3 6855185 6855319 -211181839 + FLAM_A SINE Alu 1 133 0 1817 158 3 3 chr3 6855517 6855808 -211181350 + AluJb SINE Alu 1 291 -21 1867 315 62 27 chr3 6855822 6857456 -211179702 + L1M4 LINE L1 2938 4629 -1517 507 202 0 0 chr3 6857461 6857585 -211179573 + (CATATA)n Simple_repeat Simple_repeat 2 125 0 24 53 0 0 chr3 6857593 6857631 -211179527 + AT_rich Low_complexity Low_complexity 1 38 0 276 159 57 0 chr3 6857634 6857722 -211179436 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 261 203 203 0 chr3 6857789 6857863 -211179295 - L1MC4 LINE L1 -1340 6702 6614 317 343 79 6 chr3 6857892 6858070 -211179088 + L1M4 LINE L1 4672 4862 -1284 1322 186 76 10 chr3 6858070 6858361 -211178797 - L1MC4 LINE L1 -2150 5658 5349 1096 215 56 53 chr3 6858366 6858724 -211178434 - L1ME2 LINE L1 0 6164 5806 3842 229 100 72 chr3 6858770 6859851 -211177307 + L1MC4 LINE L1 6502 7551 -491 1998 127 7 13 chr3 6859851 6860151 -211177007 + AluJb SINE Alu 1 298 -14 3842 229 100 72 chr3 6860151 6860351 -211176807 + L1MC4 LINE L1 7551 7744 -298 2305 65 41 0 chr3 6860351 6860641 -211176517 - AluY SINE Alu -9 302 1 3842 229 100 72 chr3 6860641 6860857 -211176301 + L1MC4 LINE L1 7744 8042 0 1222 149 159 62 chr3 6860864 6861140 -211176018 - AluJo SINE Alu -9 303 1 572 249 60 55 chr3 6861379 6861580 -211175578 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6861620 6861667 -211175491 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 313 261 153 51 chr3 6862049 6862206 -211174952 - MER5A DNA MER1_type 0 189 17 1700 159 10 20 chr3 6862554 6862849 -211174309 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6862893 6862991 -211174167 + (TG)n Simple_repeat Simple_repeat 2 97 0 419 299 25 25 chr3 6863139 6863296 -211173862 - MIR SINE MIR -1 261 105 251 246 65 58 chr3 6863402 6863540 -211173618 - L2 LINE L2 -4 3309 3171 1563 186 17 7 chr3 6863545 6863846 -211173312 + AluJo SINE Alu 1 304 -8 214 292 258 0 chr3 6863954 6864043 -211173115 + L2 LINE L2 3201 3312 -1 450 200 51 131 chr3 6864284 6864459 -211172699 + MER103 DNA DNA 3 163 -3 548 257 138 0 chr3 6864503 6864655 -211172503 - MER96 DNA MER1_type 0 175 3 2059 150 0 10 chr3 6864999 6865313 -211171845 - AluSx SINE Alu -1 311 1 192 254 153 0 chr3 6865362 6865421 -211171737 + L2 LINE L2 3246 3313 0 2102 101 4 0 chr3 6865776 6866053 -211171105 - AluSx SINE Alu -2 310 33 1614 46 10 15 chr3 6866098 6866295 -211170863 - MER107 DNA MER1_type 0 197 2 2357 84 0 0 chr3 6866373 6866669 -211170489 - AluSx SINE Alu -16 296 1 705 324 107 9 chr3 6868168 6868608 -211168550 + L2 LINE L2 2797 3287 -26 1637 202 56 11 chr3 6868608 6868965 -211168193 + MLT1A2 LTR MaLR 1 373 -1 705 324 107 9 chr3 6868965 6868993 -211168165 + L2 LINE L2 3287 3311 -2 271 116 23 0 chr3 6869388 6869431 -211167727 - MER4E LTR ERV1 -96 670 627 2339 90 65 3 chr3 6869448 6869769 -211167389 - L1PB1 LINE L1 -1 6150 5810 459 281 31 10 chr3 6870080 6870247 -211166911 - MIR SINE MIR -2 260 91 2311 113 0 0 chr3 6870259 6870561 -211166597 + AluSx SINE Alu 1 302 -10 218 207 17 52 chr3 6870837 6870895 -211166263 + L2 LINE L2 3217 3272 0 405 231 208 31 chr3 6871821 6871951 -211165207 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6872098 6872137 -211165021 + (TG)n Simple_repeat Simple_repeat 1 39 0 559 315 88 14 chr3 6872312 6872664 -211164494 + L1ME2 LINE L1 23 400 -6023 1816 248 60 95 chr3 6872985 6874004 -211163154 + L1ME2 LINE L1 1114 2167 -4774 2404 86 0 3 chr3 6874004 6874308 -211162850 + AluSg SINE Alu 1 303 -7 1816 248 60 95 chr3 6874308 6874485 -211162673 + L1ME2 LINE L1 2167 2349 -4592 2229 118 7 0 chr3 6874485 6874790 -211162368 + AluSx SINE Alu 1 307 -5 2432 99 0 0 chr3 6874790 6875103 -211162055 + AluSp SINE Alu 1 313 0 1816 248 60 95 chr3 6875103 6875397 -211161761 + L1ME2 LINE L1 2348 2651 -4290 921 257 5 0 chr3 6875397 6875584 -211161574 + MER5A DNA MER1_type 2 189 0 1816 248 60 95 chr3 6875584 6875669 -211161489 + L1ME2 LINE L1 2651 2737 -4204 1919 163 0 3 chr3 6875669 6875982 -211161176 + AluSx SINE Alu 1 312 0 875 159 0 0 chr3 6875992 6876118 -211161040 + FLAM_C SINE Alu 1 126 -7 1816 248 60 95 chr3 6876118 6876352 -211160806 + L1ME2 LINE L1 2746 2987 -3954 1669 157 82 0 chr3 6876352 6876632 -211160526 + AluJo SINE Alu 1 303 -9 1816 248 60 95 chr3 6876632 6876851 -211160307 + L1ME2 LINE L1 2987 3212 -3729 2332 112 3 0 chr3 6876851 6877163 -211159995 + AluSp SINE Alu 1 313 0 1816 248 60 95 chr3 6877163 6877210 -211159948 + L1ME2 LINE L1 3212 3259 -3682 1615 194 3 46 chr3 6877210 6877535 -211159623 + AluJo SINE Alu 1 311 -1 1816 248 60 95 chr3 6877535 6877809 -211159349 + L1ME2 LINE L1 3259 3569 -3372 364 191 4 2 chr3 6877811 6878068 -211159090 + AluJo SINE Alu 1 300 -2 567 180 9 70 chr3 6878108 6878274 -211158884 + L1M3 LINE L1 5423 5573 -610 186 43 0 0 chr3 6878708 6878731 -211158427 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1864 198 21 5 chr3 6878731 6879105 -211158053 + L1MD2 LINE L1 5556 5935 -307 776 158 23 23 chr3 6879124 6879257 -211157901 - AluJo SINE Alu -178 134 2 1891 189 28 46 chr3 6879258 6879665 -211157493 + L1MD2 LINE L1 5922 6322 -37 1752 171 7 11 chr3 6879665 6879951 -211157207 - AluJb SINE Alu -27 285 1 1891 189 28 46 chr3 6879951 6879976 -211157182 + L1MD2 LINE L1 6322 6346 -13 579 257 19 10 chr3 6879965 6880171 -211156987 + L1ME2 LINE L1 3619 3826 -3115 * 41234 67 5 7 chr3 6880191 6886348 -211150810 + L1PA4 LINE L1 11 6155 0 1400 279 95 2 chr3 6886354 6886932 -211150226 + L1ME2 LINE L1 3824 4455 -2486 3465 234 73 29 chr3 6886938 6887441 -211149717 + L1ME2 LINE L1 4940 5419 -1540 1858 114 42 0 chr3 6887441 6887705 -211149453 - AluSq SINE Alu -21 292 18 3465 234 73 29 chr3 6887705 6889134 -211148024 + L1ME2 LINE L1 5419 6959 0 1198 121 0 0 chr3 6889380 6889546 -211147612 - AluSg/x SINE Alu -9 303 138 415 268 141 0 chr3 6889772 6889914 -211147244 + MIR3 SINE MIR 39 200 -8 2016 146 0 3 chr3 6890098 6890393 -211146765 + AluSx SINE Alu 1 294 -18 195 283 233 33 chr3 6890514 6890634 -211146524 - L2 LINE L2 -4 3268 3125 642 233 91 6 chr3 6890671 6890847 -211146311 + MER91A DNA MER1_type 4 194 -2 346 265 81 70 chr3 6890966 6891232 -211145926 + L2 LINE L2 2782 3053 -219 1013 198 40 0 chr3 6891232 6891434 -211145724 - AluJb SINE Alu -16 296 87 279 252 23 118 chr3 6891468 6891730 -211145428 + L2 LINE L2 3077 3313 0 22 35 0 0 chr3 6891816 6891845 -211145313 + AT_rich Low_complexity Low_complexity 1 29 0 33 0 0 0 chr3 6892462 6892495 -211144663 + AT_rich Low_complexity Low_complexity 1 33 0 329 244 47 0 chr3 6892525 6892611 -211144547 - L1MC5 LINE L1 -75 7886 7797 2132 124 0 16 chr3 6892734 6893048 -211144110 - AluSx SINE Alu -2 310 2 23 54 0 0 chr3 6893048 6893085 -211144073 + AT_rich Low_complexity Low_complexity 1 37 0 278 330 144 0 chr3 6893128 6893301 -211143857 + MIR SINE MIR 35 232 -30 295 265 80 8 chr3 6893645 6893763 -211143395 - MIR SINE MIR -56 152 24 414 273 23 23 chr3 6894555 6894687 -211142471 - MIR SINE MIR -117 145 14 270 176 74 44 chr3 6895208 6895311 -211141847 - MIR SINE MIR -61 147 63 189 315 81 54 chr3 6895464 6895575 -211141583 + L2 LINE L2 3150 3263 -9 594 220 91 102 chr3 6895579 6895714 -211141444 - MIR SINE MIR 0 262 130 1728 129 70 22 chr3 6895714 6895985 -211141173 - AluJo SINE Alu -28 284 1 594 220 91 102 chr3 6895985 6896113 -211141045 - MIR SINE MIR -132 130 2 824 178 0 30 chr3 6897186 6897321 -211139837 - FLAM_C SINE Alu -2 131 1 740 225 99 31 chr3 6897351 6897573 -211139585 - MIR SINE MIR -20 242 6 505 225 0 45 chr3 6897626 6897737 -211139421 - L2 LINE L2 0 3313 3208 230 238 0 165 chr3 6897642 6897806 -211139352 - MIR SINE MIR -10 252 116 * 474 300 0 0 chr3 6897871 6897981 -211139177 - L2 LINE L2 -10 3262 3153 823 164 7 26 chr3 6898245 6898397 -211138761 + AluJb SINE Alu 140 288 -24 306 291 74 3 chr3 6898416 6898531 -211138627 + MIR3 SINE MIR 75 194 -54 384 152 15 0 chr3 6898757 6898823 -211138335 + L1MEc LINE L1 37 103 -6293 * 414 265 8 17 chr3 6898822 6898939 -211138219 + L1MEc LINE L1 706 821 -5575 644 203 0 31 chr3 6898953 6899081 -211138077 + L2 LINE L2 3190 3313 0 644 221 177 6 chr3 6899754 6899935 -211137223 + MIR SINE MIR 14 225 -37 391 290 60 0 chr3 6900003 6900103 -211137055 + MIR SINE MIR 39 144 -64 368 270 34 0 chr3 6900106 6900195 -211136963 + L2 LINE L2 3195 3286 -27 886 172 5 106 chr3 6900206 6900283 -211136875 - MER45A DNA AcHobo -1403 178 95 2356 85 3 0 chr3 6900283 6900589 -211136569 + AluSg SINE Alu 1 307 -3 886 172 5 106 chr3 6900589 6900603 -211136555 - MER45A DNA AcHobo -1486 95 81 2162 106 7 3 chr3 6900603 6900906 -211136252 + AluSp SINE Alu 1 304 -9 886 172 5 106 chr3 6900906 6901011 -211136147 - MER45A DNA AcHobo -1500 81 1 300 289 26 26 chr3 6901011 6901125 -211136033 + MIR SINE MIR 149 262 0 204 225 99 84 chr3 6901123 6901194 -211135964 - MIR SINE MIR -66 196 125 * 916 98 0 0 chr3 6901210 6901333 -211135825 + FLAM_C SINE Alu 1 123 -20 361 281 114 23 chr3 6901795 6902052 -211135106 + L2 LINE L2 2774 3052 -261 879 134 0 0 chr3 6902053 6902180 -211134978 + FLAM_C SINE Alu 1 127 -16 226 358 0 0 chr3 6902383 6902450 -211134708 + L2 LINE L2 3204 3270 -2 220 311 68 0 chr3 6902459 6902533 -211134625 + MIR SINE MIR 75 153 -55 2110 107 0 0 chr3 6902545 6902834 -211134324 - AluSx SINE Alu -6 306 18 240 209 0 0 chr3 6902887 6902930 -211134228 - L2 LINE L2 -19 3294 3252 2017 144 0 0 chr3 6903155 6903467 -211133691 + AluJb SINE Alu 1 312 0 782 154 0 29 chr3 6904031 6904167 -211132991 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 6904245 6904552 -211132606 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 6904557 6904579 -211132579 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 6904689 6904977 -211132181 + AluSx SINE Alu 1 296 -16 1962 144 100 19 chr3 6905246 6905607 -211131551 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 6905699 6905818 -211131340 + L2 LINE L2 3173 3294 -19 1971 98 41 10 chr3 6905909 6906204 -211130954 - AluSg SINE Alu -6 304 1 384 234 36 7 chr3 6906283 6906420 -211130738 + L1MC4 LINE L1 7902 8042 0 1213 149 160 62 chr3 6906428 6906703 -211130455 - AluJo SINE Alu 0 302 1 605 249 60 55 chr3 6906942 6907143 -211130015 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6907183 6907230 -211129928 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 328 261 153 51 chr3 6907612 6907769 -211129389 - MER5A DNA MER1_type 0 189 17 1606 159 10 20 chr3 6908117 6908412 -211128746 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6908456 6908554 -211128604 + (TG)n Simple_repeat Simple_repeat 2 97 0 441 294 31 25 chr3 6908702 6908862 -211128296 - MIR SINE MIR -1 261 101 263 246 65 58 chr3 6908965 6909103 -211128055 - L2 LINE L2 -4 3309 3171 1475 186 17 7 chr3 6909108 6909409 -211127749 + AluJo SINE Alu 1 304 -8 224 292 258 0 chr3 6909517 6909606 -211127552 + L2 LINE L2 3201 3312 -1 422 200 51 131 chr3 6909847 6910022 -211127136 + MER103 DNA DNA 3 163 -3 512 257 138 0 chr3 6910066 6910218 -211126940 - MER96 DNA MER1_type 0 175 3 1960 150 0 10 chr3 6910562 6910876 -211126282 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6910925 6910984 -211126174 + L2 LINE L2 3246 3313 0 2006 101 4 0 chr3 6911339 6911616 -211125542 - AluSx SINE Alu -2 310 33 1537 46 10 15 chr3 6911661 6911858 -211125300 - MER107 DNA MER1_type 0 197 2 2250 84 0 0 chr3 6911936 6912232 -211124926 - AluSx SINE Alu -16 296 1 743 324 107 9 chr3 6913731 6914171 -211122987 + L2 LINE L2 2797 3287 -26 1540 202 56 11 chr3 6914171 6914528 -211122630 + MLT1A2 LTR MaLR 1 373 -1 743 324 107 9 chr3 6914528 6914556 -211122602 + L2 LINE L2 3287 3311 -2 279 116 23 0 chr3 6914951 6914994 -211122164 - MER4E LTR ERV1 -96 670 627 2240 89 0 3 chr3 6915011 6915315 -211121843 - L1PB1 LINE L1 -1 6150 5848 483 281 31 10 chr3 6915643 6915810 -211121348 - MIR SINE MIR -2 260 91 2198 113 0 0 chr3 6915822 6916124 -211121034 + AluSx SINE Alu 1 302 -10 224 207 17 52 chr3 6916400 6916458 -211120700 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6917384 6917514 -211119644 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6917661 6917700 -211119458 + (TG)n Simple_repeat Simple_repeat 1 39 0 505 307 83 17 chr3 6917926 6918226 -211118932 + L1MCc LINE L1 81 400 -6023 1564 248 63 99 chr3 6918547 6919566 -211117592 + L1MCc LINE L1 1114 2167 -4774 2292 86 0 3 chr3 6919566 6919870 -211117288 + AluSg SINE Alu 1 303 -7 1564 248 63 99 chr3 6919870 6920047 -211117111 + L1MCc LINE L1 2167 2349 -4592 2114 118 7 0 chr3 6920047 6920352 -211116806 + AluSx SINE Alu 1 307 -5 2319 99 0 0 chr3 6920352 6920665 -211116493 + AluSp SINE Alu 1 313 0 1564 248 63 99 chr3 6920665 6920959 -211116199 + L1MCc LINE L1 2348 2651 -4290 839 257 5 0 chr3 6920959 6921146 -211116012 + MER5A DNA MER1_type 2 189 0 1564 248 63 99 chr3 6921146 6921231 -211115927 + L1MCc LINE L1 2651 2737 -4204 1816 163 0 3 chr3 6921231 6921544 -211115614 + AluSx SINE Alu 1 312 0 827 159 0 0 chr3 6921554 6921680 -211115478 + FLAM_C SINE Alu 1 126 -7 1564 248 63 99 chr3 6921680 6921914 -211115244 + L1MCc LINE L1 2746 2987 -3954 1572 157 82 0 chr3 6921914 6922194 -211114964 + AluJo SINE Alu 1 303 -9 1564 248 63 99 chr3 6922194 6922413 -211114745 + L1MCc LINE L1 2987 3257 -3684 2221 107 3 0 chr3 6922413 6922721 -211114437 + AluSp SINE Alu 1 309 -4 1564 248 63 99 chr3 6922721 6922761 -211114397 + L1MCc LINE L1 3257 3297 -3644 577 205 9 18 chr3 6922774 6922886 -211114272 + FLAM_C SINE Alu 3 113 -30 185 0 40 0 chr3 6924718 6924743 -211112415 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chr3 6924742 6924775 -211112383 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 234 9 72 chr3 6926071 6926182 -211110976 + L1ME LINE L1 5725 5828 -293 318 167 0 0 chr3 6927387 6927447 -211109711 + (TG)n Simple_repeat Simple_repeat 2 61 0 33 0 0 0 chr3 6928468 6928501 -211108657 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 6929323 6929349 -211107809 + AT_rich Low_complexity Low_complexity 1 26 0 390 229 0 0 chr3 6930915 6930998 -211106160 - MIR SINE MIR -101 161 79 791 261 81 5 chr3 6931160 6931382 -211105776 - MIR SINE MIR -22 240 2 208 304 128 16 chr3 6931425 6931550 -211105608 - MIR SINE MIR 0 262 124 363 284 0 0 chr3 6931562 6931643 -211105515 - MIR SINE MIR -63 145 65 316 301 62 9 chr3 6931696 6931809 -211105349 - MIR SINE MIR -54 208 90 2034 109 10 0 chr3 6931999 6932292 -211104866 + AluJb SINE Alu 1 296 -16 183 80 0 0 chr3 6932407 6932432 -211104726 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr3 6933558 6933587 -211103571 + AT_rich Low_complexity Low_complexity 1 29 0 4073 175 32 28 chr3 6933615 6934461 -211102697 + L1MB5 LINE L1 5314 6166 -8 987 148 37 70 chr3 6934473 6934717 -211102441 - L1MC5 LINE L1 -68 7893 7658 2229 87 7 0 chr3 6934809 6935108 -211102050 + AluSg SINE Alu 1 301 -9 1607 171 32 4 chr3 6935226 6935506 -211101652 + AluJo SINE Alu 1 288 -24 1047 285 77 6 chr3 6935571 6935908 -211101250 - L1MC4a LINE L1 -1865 5943 5583 291 242 55 11 chr3 6935955 6936046 -211101112 + L1MC4a LINE L1 5560 5654 -467 33 0 0 0 chr3 6936051 6936084 -211101074 + AT_rich Low_complexity Low_complexity 1 33 0 750 171 0 0 chr3 6936084 6936201 -211100957 - FLAM_C SINE Alu -25 118 2 215 267 0 0 chr3 6936278 6936323 -211100835 + polypurine Low_complexity Low_complexity 4 48 0 306 303 127 42 chr3 6936342 6936507 -211100651 + L1MC4a LINE L1 5755 5933 -1875 514 211 65 16 chr3 6936529 6936652 -211100506 + MIR SINE MIR 110 238 -24 432 230 85 67 chr3 6936700 6936865 -211100293 + L1ME4a LINE L1 5943 6110 -11 268 356 104 0 chr3 6937171 6937286 -211099872 + L2 LINE L2 3146 3272 0 486 254 57 51 chr3 6937299 6937476 -211099682 + MIR SINE MIR 80 257 -5 902 167 88 21 chr3 6937489 6937681 -211099477 + AluJo SINE Alu 87 291 -21 34 24 0 0 chr3 6937682 6937723 -211099435 + AT_rich Low_complexity Low_complexity 1 41 0 291 114 0 0 chr3 6937833 6937877 -211099281 + (CA)n Simple_repeat Simple_repeat 1 44 0 524 243 225 0 chr3 6937929 6938102 -211099056 - MIR SINE MIR -28 234 23 423 290 46 100 chr3 6939561 6939820 -211097338 - L2 LINE L2 0 3272 3028 2000 183 41 31 chr3 6939851 6940267 -211096891 + MLT1C LTR MaLR 44 463 -4 259 263 71 30 chr3 6940270 6940369 -211096789 - L2 LINE L2 -345 2969 2867 2355 49 0 16 chr3 6940965 6941272 -211095886 - AluY SINE Alu -9 302 1 232 136 0 169 chr3 6941324 6941383 -211095775 + MLT1K LTR MaLR 201 249 -339 227 287 90 48 chr3 6991390 6991578 -211045580 - L2 LINE L2 -380 2934 2739 706 172 8 30 chr3 6991742 6991876 -211045282 + FLAM_C SINE Alu 1 131 -12 339 167 0 0 chr3 6991881 6991947 -211045211 + G-rich Low_complexity Low_complexity 4 69 0 1174 138 0 0 chr3 6991989 6992149 -211045009 + (T)n Simple_repeat Simple_repeat 1 160 0 253 391 0 0 chr3 6992331 6992492 -211044666 + T-rich Low_complexity Low_complexity 2 162 0 369 309 119 66 chr3 6994241 6994484 -211042674 + L2 LINE L2 3014 3269 -3 830 271 24 82 chr3 6994659 6995120 -211042038 + MER34 LTR ERV1 1 434 -108 715 124 0 0 chr3 6995142 6995239 -211041919 + FLAM_C SINE Alu 21 117 -26 260 77 0 0 chr3 6995506 6995545 -211041613 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 6995605 6995814 -211041344 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 6996049 6996110 -211041048 - Alu SINE Alu -9 301 241 1492 264 19 16 chr3 6996111 6996479 -211040679 + MER82 DNA MER2_type 212 580 -73 282 80 0 60 chr3 6998915 6998965 -211038193 + Alu SINE Alu 1 47 -261 970 141 19 0 chr3 6998965 6999121 -211038037 + AluSg/x SINE Alu 143 301 -11 375 298 92 26 chr3 6999156 6999384 -211037774 + MIR SINE MIR 14 256 -6 459 273 0 0 chr3 6999517 6999627 -211037531 - MER94 DNA DNA 0 134 25 260 300 186 14 chr3 7000012 7000152 -211037006 - MER117 DNA MER1_type -15 182 19 1090 251 58 69 chr3 7000451 7001027 -211036131 + L2 LINE L2 2760 3306 -7 1718 122 37 10 chr3 7002250 7002546 -211034612 - AluSx SINE Alu -8 304 1 201 362 133 0 chr3 7002671 7002776 -211034382 - L2 LINE L2 -1 3312 3194 293 315 11 0 chr3 7003134 7003226 -211033932 - MIR3 SINE MIR -25 183 91 1484 196 28 11 chr3 7004189 7004475 -211032683 - AluJo SINE Alu -21 291 1 721 282 43 60 chr3 7004571 7004872 -211032286 - L2 LINE L2 -13 3300 3005 531 298 12 6 chr3 7005052 7005220 -211031938 - MIR SINE MIR -22 240 72 198 284 74 53 chr3 7005325 7005420 -211031738 + MIR SINE MIR 70 166 -96 425 339 15 0 chr3 7006093 7006272 -211030886 - MIR SINE MIR -44 218 36 3788 55 13 0 chr3 7006859 7007335 -211029823 - L1PA6 LINE L1 -199 5955 5474 * 6560 55 22 2 chr3 7007334 7008203 -211028955 + L1P LINE L1 3694 4579 -1567 324 324 118 42 chr3 7008385 7008623 -211028535 + HAL1b LINE L1 15 270 -1078 195 298 64 53 chr3 7009161 7009255 -211027903 + MIR3 SINE MIR 111 205 -3 1366 186 13 68 chr3 7009512 7009819 -211027339 + AluJb SINE Alu 1 290 -22 533 264 21 7 chr3 7010152 7010292 -211026866 - MIR SINE MIR -48 214 73 1087 101 0 0 chr3 7010350 7010498 -211026660 - Tigger7 DNA MER2_type -1 2486 2339 341 171 100 0 chr3 7010517 7010587 -211026571 - Tigger7 DNA MER2_type -473 77 1 429 270 162 0 chr3 7010779 7010927 -211026231 + MIR3 SINE MIR 33 204 -4 1878 104 45 3 chr3 7011245 7011534 -211025624 + AluSx SINE Alu 1 301 -11 2072 107 0 7 chr3 7011545 7011834 -211025324 + AluSc SINE Alu 1 287 -22 318 244 145 53 chr3 7011843 7011974 -211025184 + L3 LINE CR1 1206 1348 -229 366 274 35 9 chr3 7011974 7012087 -211025071 + LTR16A1 LTR ERVL 4 119 -338 234 0 0 0 chr3 7012287 7012313 -211024845 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 1994 127 23 10 chr3 7014244 7014552 -211022606 + AluSx SINE Alu 1 312 0 33 25 0 0 chr3 7014552 7014592 -211022566 + AT_rich Low_complexity Low_complexity 1 40 0 290 324 75 0 chr3 7015595 7015740 -211021418 - MIR3 SINE MIR -30 178 24 440 280 213 14 chr3 7016457 7016664 -211020494 - MIR SINE MIR -1 261 14 268 234 0 0 chr3 7016882 7016946 -211020212 - MIR SINE MIR -132 130 67 193 313 205 0 chr3 7016976 7017059 -211020099 - L2 LINE L2 -18 3254 3155 2250 100 0 0 chr3 7017101 7017402 -211019756 - AluSx SINE Alu -11 301 1 427 118 24 0 chr3 7018002 7018087 -211019071 + CT-rich Low_complexity Low_complexity 2 88 0 1710 172 3 3 chr3 7018250 7018546 -211018612 - AluJb SINE Alu -16 296 1 183 217 0 0 chr3 7019052 7019112 -211018046 + GA-rich Low_complexity Low_complexity 2 61 0 1812 142 14 7 chr3 7019197 7019492 -211017666 + AluJb SINE Alu 1 297 -15 382 283 5 43 chr3 7019499 7019683 -211017475 + GA-rich Low_complexity Low_complexity 2 178 0 534 225 113 31 chr3 7019791 7019951 -211017207 + MIR SINE MIR 29 201 -61 1244 136 117 0 chr3 7019956 7020073 -211017085 + MER30 DNA MER1_type 1 103 -127 2385 52 0 0 chr3 7020073 7020362 -211016796 - AluSc SINE Alu -20 289 1 1244 136 117 0 chr3 7020362 7020450 -211016708 + MER30 DNA MER1_type 103 230 0 277 267 0 27 chr3 7020614 7020689 -211016469 - MER94 DNA DNA -61 73 1 418 258 144 6 chr3 7020706 7020873 -211016285 - Charlie8 DNA MER1_type -2136 281 92 230 256 14 145 chr3 7020988 7021195 -211015963 - L2 LINE L2 -92 3180 3001 707 283 0 12 chr3 7021251 7021424 -211015734 - MIR SINE MIR -24 238 68 2050 116 0 0 chr3 7021760 7022044 -211015114 + AluSc SINE Alu 1 284 -25 216 175 175 0 chr3 7022090 7022147 -211015011 - MIR SINE MIR -108 100 34 333 284 129 32 chr3 7022837 7022992 -211014166 - L2 LINE L2 -7 3306 3137 1002 196 23 46 chr3 7023012 7023231 -211013927 - MER20 DNA MER1_type -5 214 1 1563 164 7 14 chr3 7023293 7023579 -211013579 + AluJo SINE Alu 14 297 -15 1040 148 61 13 chr3 7023579 7023809 -211013349 - MER33 DNA MER1_type -24 300 60 336 198 143 11 chr3 7023906 7023997 -211013161 + MER5A DNA MER1_type 4 106 -83 222 224 129 12 chr3 7024144 7024229 -211012929 + MIR SINE MIR 99 193 -69 2006 110 3 3 chr3 7025290 7025581 -211011577 + AluSx SINE Alu 1 291 -21 342 76 0 45 chr3 7025593 7025659 -211011499 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 557 245 182 10 chr3 7025886 7026078 -211011080 + MIR SINE MIR 33 257 -5 336 255 92 10 chr3 7026093 7026191 -211010967 - MIR SINE MIR -155 107 2 275 262 0 0 chr3 7026276 7026337 -211010821 + MLT1K LTR MaLR 5 65 -523 676 260 250 32 chr3 7026357 7026669 -211010489 + MLT1K LTR MaLR 206 585 -3 2138 117 3 0 chr3 7027041 7027349 -211009809 - AluSq SINE Alu -4 309 1 181 200 25 0 chr3 7027426 7027466 -211009692 - L2 LINE L2 -5 3267 3227 2184 153 46 57 chr3 7028109 7028157 -211009001 - L1MB4 LINE L1 0 6180 6133 1599 175 3 3 chr3 7028157 7028442 -211008716 - AluJb SINE Alu -17 295 11 2184 153 46 57 chr3 7028442 7028870 -211008288 - L1MB4 LINE L1 -47 6133 5709 280 231 0 0 chr3 7029052 7029104 -211008054 + 5S rRNA rRNA 1 52 -69 646 208 60 24 chr3 7029368 7029536 -211007622 + MIR SINE MIR 72 245 -17 271 167 111 0 chr3 7029787 7029841 -211007317 + MIR SINE MIR 123 182 -80 1758 149 0 34 chr3 7029976 7030299 -211006859 + AluSx SINE Alu 1 312 0 189 94 0 0 chr3 7030387 7030419 -211006739 + (CAACC)n Simple_repeat Simple_repeat 2 33 0 236 302 15 65 chr3 7031444 7031463 -211005695 - MIR SINE MIR -33 175 157 2208 65 0 29 chr3 7031463 7031769 -211005389 - AluY SINE Alu -14 297 1 236 302 15 65 chr3 7031769 7031887 -211005271 - MIR SINE MIR -51 157 46 2071 110 10 0 chr3 7031907 7032206 -211004952 - AluSq SINE Alu -10 303 2 1564 180 79 75 chr3 7032309 7032758 -211004400 + Charlie1b DNA MER1_type 1 454 -2307 2075 117 0 3 chr3 7032758 7033057 -211004101 - AluSx SINE Alu -14 298 1 1564 180 79 75 chr3 7033057 7033128 -211004030 + Charlie1b DNA MER1_type 454 523 0 1936 117 17 17 chr3 7033177 7033476 -211003682 - AluSx SINE Alu -13 299 1 327 65 0 0 chr3 7033528 7033574 -211003584 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 782 172 0 8 chr3 7033574 7033708 -211003450 - FLAM_C SINE Alu 0 133 1 579 230 182 7 chr3 7033722 7033870 -211003288 - MER5A DNA MER1_type -15 174 1 356 259 61 83 chr3 7034554 7034782 -211002376 - MER102b DNA MER1_type -1 340 118 730 157 0 57 chr3 7034832 7034972 -211002186 + AluJo/FLAM SINE Alu 1 132 -170 2253 99 0 0 chr3 7034972 7035275 -211001883 + AluSx SINE Alu 1 303 -9 521 208 31 6 chr3 7035275 7035418 -211001740 + GA-rich Low_complexity Low_complexity 1 150 -13 1817 111 47 11 chr3 7035418 7035697 -211001461 + AluSx SINE Alu 1 289 -23 521 208 31 6 chr3 7035697 7035712 -211001446 + GA-rich Low_complexity Low_complexity 150 163 0 468 0 0 0 chr3 7035777 7035829 -211001329 + (CA)n Simple_repeat Simple_repeat 2 53 0 2054 106 10 0 chr3 7036170 7036462 -211000696 + AluSq SINE Alu 1 295 -18 1517 179 0 32 chr3 7036615 7036927 -211000231 + AluJo SINE Alu 11 312 0 334 281 47 64 chr3 7037131 7037302 -210999856 + MIR SINE MIR 45 212 -50 435 301 58 13 chr3 7037400 7037556 -210999602 - MIR SINE MIR -39 223 61 1626 177 7 11 chr3 7037655 7037788 -210999370 + AluJo SINE Alu 1 133 -179 2292 61 0 52 chr3 7037788 7038114 -210999044 + AluY SINE Alu 1 309 -2 1626 177 7 11 chr3 7038114 7038262 -210998896 + AluJo SINE Alu 133 281 -31 252 100 0 0 chr3 7038262 7038302 -210998856 + (CA)n Simple_repeat Simple_repeat 1 40 0 1598 153 20 20 chr3 7038312 7038606 -210998552 + AluJb SINE Alu 5 298 -14 186 43 0 0 chr3 7038606 7038629 -210998529 + (TA)n Simple_repeat Simple_repeat 2 24 0 1800 150 0 25 chr3 7038694 7038833 -210998325 + AluSx SINE Alu 1 142 -170 2262 81 3 7 chr3 7038833 7039130 -210998028 + AluSg SINE Alu 2 297 -13 1800 150 0 25 chr3 7039130 7039310 -210997848 + AluSx SINE Alu 142 312 0 231 307 86 57 chr3 7039326 7039466 -210997692 - L2 LINE L2 -2 3311 3168 254 324 102 25 chr3 7039502 7039733 -210997425 - L2 LINE L2 -276 3037 2791 373 217 43 7 chr3 7039740 7039878 -210997280 + (TA)n Simple_repeat Simple_repeat 2 144 0 29 0 0 0 chr3 7039914 7039943 -210997215 + AT_rich Low_complexity Low_complexity 1 29 0 702 75 0 0 chr3 7039972 7040066 -210997092 - L1PA5 LINE L1 0 6154 6061 624 219 14 0 chr3 7040092 7040238 -210996920 - L1MA10 LINE L1 -13 6321 6174 1887 137 14 0 chr3 7040239 7040531 -210996627 + AluJo SINE Alu 1 296 -16 503 259 45 58 chr3 7040531 7040774 -210996384 - L1MD2 LINE L1 -139 6027 5788 268 304 14 109 chr3 7040817 7040955 -210996203 + MIR SINE MIR 32 156 -106 399 293 73 44 chr3 7041626 7041831 -210995327 + MIR SINE MIR 31 241 -21 263 93 23 0 chr3 7041890 7041933 -210995225 + (TG)n Simple_repeat Simple_repeat 2 45 0 874 269 129 6 chr3 7042033 7042367 -210994791 + L3 LINE CR1 1161 1535 -42 360 0 0 0 chr3 7042520 7042560 -210994598 + (T)n Simple_repeat Simple_repeat 1 40 0 359 203 100 144 chr3 7042643 7042914 -210994244 - MLT1K LTR MaLR 0 588 330 1306 194 0 68 chr3 7043043 7043367 -210993791 + AluJo SINE Alu 1 302 -10 1958 126 0 3 chr3 7043369 7043654 -210993504 + AluSx SINE Alu 1 284 -28 222 37 0 0 chr3 7043654 7043681 -210993477 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 592 326 84 45 chr3 7043798 7044317 -210992841 + L2 LINE L2 2684 3260 -12 817 213 38 85 chr3 7045025 7045151 -210992007 + MIR SINE MIR 29 140 -122 1862 122 40 0 chr3 7045151 7045447 -210991711 - AluSx SINE Alu -4 308 1 817 213 38 85 chr3 7045447 7045555 -210991603 + MIR SINE MIR 140 252 -10 274 171 157 14 chr3 7045660 7045730 -210991428 - L2 LINE L2 -5 3308 3229 1993 110 12 95 chr3 7045881 7046228 -210990930 - L1PBa LINE L1 -4936 1927 1618 2105 108 0 29 chr3 7046228 7046542 -210990616 - AluSx SINE Alu -7 305 1 1993 110 12 95 chr3 7046542 7046604 -210990554 - L1PBa LINE L1 -5245 1618 1552 593 338 18 14 chr3 7046822 7047041 -210990117 + MIR SINE MIR 42 261 -1 251 295 67 0 chr3 7047099 7047204 -210989954 + L1ME4a LINE L1 6010 6121 0 1882 124 9 25 chr3 7047379 7047694 -210989464 + AluSx SINE Alu 1 310 -2 278 283 76 0 chr3 7048076 7048168 -210988990 - MLT1K LTR MaLR -280 308 210 292 323 21 0 chr3 7048535 7048628 -210988530 + MIR3 SINE MIR 108 202 -6 206 286 0 0 chr3 7048817 7048866 -210988292 - MIR SINE MIR -55 207 159 2185 166 69 51 chr3 7048866 7049360 -210987798 + MLT1D LTR MaLR 1 503 -2 2214 101 3 7 chr3 7049388 7049695 -210987463 + AluSx SINE Alu 1 306 -6 264 261 59 34 chr3 7049786 7049905 -210987253 - L2 LINE L2 -19 3294 3173 1988 144 100 17 chr3 7049997 7050357 -210986801 + MLT1B LTR MaLR 1 390 0 1993 115 28 0 chr3 7050625 7050913 -210986245 - AluSx SINE Alu -16 296 1 22 0 0 0 chr3 7051023 7051045 -210986113 + AT_rich Low_complexity Low_complexity 1 22 0 1833 153 3 19 chr3 7051050 7051357 -210985801 - AluJb SINE Alu -10 302 1 793 147 0 29 chr3 7051435 7051571 -210985587 + FLAM_C SINE Alu 2 133 0 529 262 66 20 chr3 7051734 7052033 -210985125 - MLT1I LTR MaLR 0 409 61 2626 97 28 14 chr3 7052036 7052397 -210984761 + THE1C LTR MaLR 10 375 0 711 261 96 5 chr3 7052459 7052677 -210984481 - MLT1L LTR MaLR -10 605 368 4731 136 16 6 chr3 7052701 7053405 -210983753 + MER50 LTR ERV1 1 711 -23 1921 136 0 28 chr3 7053455 7053772 -210983386 - AluJb SINE Alu -4 308 1 502 281 75 48 chr3 7053775 7054070 -210983088 - MLT1L LTR MaLR -310 305 3 254 259 111 0 chr3 7054113 7054194 -210982964 - MIR SINE MIR -59 203 114 2060 123 0 3 chr3 7054673 7054974 -210982184 + AluSx SINE Alu 1 300 -12 716 201 0 29 chr3 7055235 7055374 -210981784 + FLAM_C SINE Alu 6 140 -3 457 304 125 18 chr3 7055432 7055656 -210981502 - MIR SINE MIR -12 250 3 333 239 14 34 chr3 7055746 7055852 -210981306 - MIR SINE MIR -92 116 14 480 295 95 20 chr3 7056695 7056895 -210980263 + MIR SINE MIR 47 261 -1 185 108 27 0 chr3 7057194 7057231 -210979927 + (TGG)n Simple_repeat Simple_repeat 3 40 0 649 298 102 80 chr3 7057650 7058090 -210979068 - L2 LINE L2 -9 3263 2814 1873 113 57 0 chr3 7058133 7058416 -210978742 - AluSx SINE Alu -9 303 5 223 316 143 0 chr3 7058873 7058971 -210978187 - L2 LINE L2 -5 3308 3197 578 254 9 111 chr3 7058982 7059103 -210978055 - MIR SINE MIR -48 214 123 1870 136 0 17 chr3 7059103 7059397 -210977761 + AluSx SINE Alu 1 289 -23 578 254 9 111 chr3 7059397 7059492 -210977666 - MIR SINE MIR -139 123 20 818 146 0 8 chr3 7059519 7059642 -210977516 - FLAM_C SINE Alu -16 127 6 1054 267 140 32 chr3 7060145 7060609 -210976549 + MER20B DNA MER1_type 2 515 -268 849 205 21 38 chr3 7060715 7060954 -210976204 + MER20B DNA MER1_type 515 749 -34 2112 104 40 0 chr3 7060957 7061255 -210975903 + AluSx SINE Alu 1 310 -2 326 194 97 0 chr3 7061332 7061404 -210975754 + MER20B DNA MER1_type 207 285 -498 444 111 0 0 chr3 7061420 7061492 -210975666 + Alu SINE Alu 237 308 -2 974 243 46 102 chr3 7061574 7062056 -210975102 - L2 LINE L2 -664 2650 2196 1718 126 0 37 chr3 7062375 7062669 -210974489 + AluJb SINE Alu 12 294 -18 626 283 76 22 chr3 7063440 7063479 -210973679 + MIR SINE MIR 14 49 -213 2257 103 0 0 chr3 7063479 7063790 -210973368 - AluSx SINE Alu -1 311 1 626 283 76 22 chr3 7063790 7063973 -210973185 + MIR SINE MIR 49 248 -14 1510 153 142 54 chr3 7064068 7064421 -210972737 + MLT1B LTR MaLR 1 384 -6 247 356 9 0 chr3 7064579 7064694 -210972464 - L2 LINE L2 -370 2944 2829 1504 253 30 39 chr3 7064864 7065082 -210972076 + LTR16A LTR ERVL 20 234 -216 2064 123 0 0 chr3 7065082 7065375 -210971783 - AluSx SINE Alu -19 293 1 1504 253 30 39 chr3 7065375 7065591 -210971567 + LTR16A LTR ERVL 234 450 0 2117 114 3 0 chr3 7065710 7066007 -210971151 - AluSg SINE Alu -10 300 3 298 342 46 97 chr3 7066232 7066597 -210970561 + L2 LINE L2 2860 3242 -30 3113 173 39 22 chr3 7066597 7066748 -210970410 - MER6A DNA MER2_type -260 605 458 2134 105 3 0 chr3 7066748 7067043 -210970115 + AluSx SINE Alu 1 296 -16 2180 86 0 3 chr3 7067044 7067336 -210969822 + AluSc SINE Alu 1 291 -18 3113 173 39 22 chr3 7067336 7067777 -210969381 - MER6A DNA MER2_type -406 459 1 298 342 46 97 chr3 7067777 7067844 -210969314 + L2 LINE L2 3242 3270 -2 1601 175 14 0 chr3 7067912 7068190 -210968968 + AluJb SINE Alu 1 285 -27 593 27 13 0 chr3 7068190 7068265 -210968893 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 661 250 14 7 chr3 7068358 7068498 -210968660 + Charlie1 DNA MER1_type 1 141 -2620 * 2231 179 35 31 chr3 7068494 7068956 -210968202 + Charlie1 DNA MER1_type 2207 2673 -88 1907 153 0 0 chr3 7068956 7069256 -210967902 + AluSx SINE Alu 1 300 -12 2231 179 35 31 chr3 7069256 7069335 -210967823 + Charlie1 DNA MER1_type 2673 2750 -11 2137 104 0 10 chr3 7069335 7069643 -210967515 + AluSx SINE Alu 1 305 -7 1012 229 162 75 chr3 7069688 7070059 -210967099 - MLT1K LTR MaLR -159 429 27 1349 151 117 30 chr3 7070062 7070327 -210966831 + AluJo SINE Alu 11 298 -14 337 263 150 0 chr3 7071116 7071249 -210965909 + L3 LINE CR1 1272 1424 -153 638 193 25 0 chr3 7071375 7071494 -210965664 + AluJb SINE Alu 1 122 -190 1253 102 43 132 chr3 7071647 7071781 -210965377 + L1MA5A LINE L1 5991 6135 -168 2246 107 0 0 chr3 7071781 7072091 -210965067 - AluSx SINE Alu 0 312 3 1911 121 3 16 chr3 7072093 7072400 -210964758 - AluSg SINE Alu -6 304 2 1253 102 43 132 chr3 7072400 7072445 -210964713 + L1MA5A LINE L1 6136 6183 -120 1965 134 0 0 chr3 7072445 7072735 -210964423 + AluSq SINE Alu 1 290 -23 1253 102 43 132 chr3 7072735 7072878 -210964280 + L1MA5A LINE L1 6183 6301 -2 722 266 28 28 chr3 7074002 7074216 -210962942 - MIR SINE MIR -48 214 1 1022 262 148 10 chr3 7074339 7074763 -210962395 - MLT1J2 LTR MaLR 0 450 1 2267 92 3 10 chr3 7074867 7075181 -210961977 - AluSp SINE Alu 0 313 2 593 181 0 0 chr3 7076260 7076354 -210960804 - AluJb SINE Alu -42 270 177 443 267 0 0 chr3 7076355 7076460 -210960698 - HERVL LTR ERVL -281 5373 5269 1192 253 48 24 chr3 7076524 7076860 -210960298 + ERVL LTR ERVL 3098 3441 -2323 284 250 261 11 chr3 7076949 7077037 -210960121 + MIR SINE MIR 38 147 -61 27 62 0 0 chr3 7077319 7077367 -210959791 + AT_rich Low_complexity Low_complexity 1 48 0 697 318 55 4 chr3 7077842 7078078 -210959080 + MIR SINE MIR 13 260 -2 1395 168 40 37 chr3 7078089 7078386 -210958772 + AluJo SINE Alu 1 298 -14 2029 113 3 3 chr3 7078747 7079039 -210958119 + AluSg SINE Alu 1 292 -18 1012 167 9 79 chr3 7079230 7079457 -210957701 + AluJo SINE Alu 1 211 -101 860 272 158 14 chr3 7079464 7079832 -210957326 + LTR33 LTR ERVL 49 469 -52 2165 115 0 0 chr3 7079846 7080150 -210957008 + AluSx SINE Alu 1 304 -8 2238 148 50 5 chr3 7080160 7080560 -210956598 + L1MC1 LINE L1 5911 6328 -5 328 209 60 11 chr3 7080754 7080844 -210956314 - MLT1J LTR MaLR 0 615 416 2284 80 0 7 chr3 7080856 7081156 -210956002 + AluSx SINE Alu 2 299 -13 435 271 21 14 chr3 7081156 7081300 -210955858 + MIR SINE MIR 118 262 0 1504 106 78 78 chr3 7081941 7082234 -210954924 + AluSx SINE Alu 2 294 -18 802 141 8 0 chr3 7082314 7082442 -210954716 + AluJ SINE Alu 1 129 -173 444 277 98 27 chr3 7082548 7082732 -210954426 - MIR SINE MIR 0 262 66 1613 169 7 23 chr3 7083034 7083336 -210953822 + AluJb SINE Alu 1 297 -15 2064 128 0 10 chr3 7083339 7083651 -210953507 + AluSg SINE Alu 1 309 -1 288 0 0 0 chr3 7083838 7083870 -210953288 + (TA)n Simple_repeat Simple_repeat 1 32 0 280 238 71 0 chr3 7083879 7083963 -210953195 - L1MC4 LINE L1 -1339 6703 6614 234 0 0 0 chr3 7083963 7083989 -210953169 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 378 0 0 0 chr3 7083988 7084030 -210953128 + (TA)n Simple_repeat Simple_repeat 1 42 0 201 74 0 0 chr3 7084532 7084559 -210952599 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 1129 123 6 0 chr3 7084827 7084990 -210952168 + AluJ SINE Alu 135 298 -14 6306 94 47 10 chr3 7086082 7087016 -210950142 - LTR5 LTR ERVK 0 969 1 1845 147 3 7 chr3 7087582 7087874 -210949284 + AluJb SINE Alu 1 291 -21 1399 187 16 50 chr3 7088336 7088657 -210948501 + AluJo SINE Alu 1 310 -2 242 188 83 0 chr3 7089214 7089262 -210947896 + L2 LINE L2 3221 3272 0 941 202 86 73 chr3 7089272 7089294 -210947864 - L1M4 LINE L1 -754 5392 5372 1804 129 3 45 chr3 7089294 7089604 -210947554 - AluSx SINE Alu -12 300 4 941 202 86 73 chr3 7089604 7089775 -210947383 - L1M4 LINE L1 -774 5372 5205 2021 136 13 0 chr3 7089775 7090083 -210947075 - AluSx SINE Alu 0 312 1 941 202 86 73 chr3 7090083 7090260 -210946898 - L1M4 LINE L1 -941 5205 5016 457 152 0 43 chr3 7090306 7090398 -210946760 - AluJ/FRAM SINE Alu -2 310 223 36 23 0 0 chr3 7090581 7090624 -210946534 + AT_rich Low_complexity Low_complexity 1 43 0 774 90 0 0 chr3 7090629 7090729 -210946429 - HY3 scRNA scRNA -1 100 1 534 239 63 63 chr3 7090749 7090862 -210946296 - Charlie7 DNA MER1_type -29 2583 2471 1668 192 13 0 chr3 7090862 7091170 -210945988 - AluJo SINE Alu 0 312 1 534 239 63 63 chr3 7091170 7091489 -210945669 - Charlie7 DNA MER1_type -141 2471 314 352 363 55 31 chr3 7091513 7091838 -210945320 - LTR16C LTR ERVL -10 481 149 2094 109 3 0 chr3 7092823 7093127 -210944031 - AluSx SINE Alu -7 305 1 21 0 0 0 chr3 7093386 7093407 -210943751 + AT_rich Low_complexity Low_complexity 1 21 0 1692 157 7 20 chr3 7094334 7094634 -210942524 + AluSx SINE Alu 1 296 -16 382 296 53 59 chr3 7095333 7095502 -210941656 + MER5A DNA MER1_type 22 189 0 1682 150 10 20 chr3 7095812 7095945 -210941213 + AluJo SINE Alu 1 134 -178 2067 103 0 63 chr3 7095945 7096276 -210940882 + AluSg SINE Alu 1 310 0 1682 150 10 20 chr3 7096276 7096435 -210940723 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7097237 7097259 -210939899 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 7097371 7097459 -210939699 + L2 LINE L2 3221 3308 -5 1752 137 53 0 chr3 7097538 7097822 -210939336 + AluJb SINE Alu 1 299 -13 1248 104 0 0 chr3 7097912 7098085 -210939073 + AluSp SINE Alu 132 304 -9 187 111 0 0 chr3 7098645 7098672 -210938486 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 7098961 7099039 -210938119 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 7099039 7099320 -210937838 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 7099320 7099412 -210937746 + MIR SINE MIR 163 262 0 1229 134 113 79 chr3 7099612 7099904 -210937254 + AluJo SINE Alu 1 302 0 1536 110 4 25 chr3 7099916 7100161 -210936997 + AluSq SINE Alu 67 306 -7 242 303 121 0 chr3 7100890 7100989 -210936169 - L2 LINE L2 -1 3271 3161 1308 158 63 60 chr3 7101405 7101690 -210935468 + AluJo SINE Alu 23 308 -4 678 159 0 90 chr3 7102169 7102203 -210934955 - MER94 DNA DNA -1 133 98 2216 110 3 13 chr3 7102203 7102502 -210934656 - AluSx SINE Alu -16 296 1 678 159 0 90 chr3 7102502 7102612 -210934546 - MER94 DNA DNA -36 98 2 2196 157 60 35 chr3 7102651 7103103 -210934055 + MLT1C LTR MaLR 5 467 0 2341 107 22 19 chr3 7103226 7103592 -210933566 - L1PA16 LINE L1 0 6166 5800 2192 118 10 0 chr3 7103593 7103889 -210933269 - AluSq SINE Alu -14 299 1 2255 129 0 0 chr3 7104462 7104773 -210932385 + AluSx SINE Alu 1 311 -1 2108 135 0 3 chr3 7104962 7105266 -210931892 + AluSq SINE Alu 1 303 -10 2140 123 14 0 chr3 7105270 7105563 -210931595 + AluSx SINE Alu 1 297 -15 1922 128 3 61 chr3 7106148 7106461 -210930697 + AluSp SINE Alu 1 295 -18 2131 127 13 0 chr3 7106516 7106815 -210930343 + AluSg SINE Alu 1 303 -7 2513 135 46 14 chr3 7107308 7107708 -210929450 - MER65A LTR ERV1 0 445 29 2024 126 0 0 chr3 7107708 7107979 -210929179 - AluSx SINE Alu -41 271 1 2513 135 46 14 chr3 7107979 7108009 -210929149 - MER65A LTR ERV1 -416 29 1 783 163 7 22 chr3 7108044 7108179 -210928979 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7108257 7108323 -210928835 + GA-rich Low_complexity Low_complexity 4 67 0 343 263 32 0 chr3 7108333 7108428 -210928730 + MER97c DNA MER1_type? 27 124 -966 206 158 26 0 chr3 7108451 7108489 -210928669 + CT-rich Low_complexity Low_complexity 4 42 0 243 202 67 58 chr3 7108491 7108595 -210928563 + L1MDa LINE L1 2535 2639 -3901 998 259 4 8 chr3 7108607 7108858 -210928300 + AluJo SINE Alu 7 256 -56 1650 235 92 74 chr3 7110473 7111266 -210925892 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 7111463 7111698 -210925460 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 7111800 7112095 -210925063 - AluSx SINE Alu -18 294 2 1283 182 42 42 chr3 7112334 7112396 -210924762 + L1PA16 LINE L1 5875 5936 -230 2180 124 3 0 chr3 7112396 7112695 -210924463 + AluSx SINE Alu 1 300 -12 1283 182 42 42 chr3 7112695 7112918 -210924240 + L1PA16 LINE L1 5935 6160 -6 196 282 0 0 chr3 7113961 7114000 -210923158 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 7114482 7114767 -210922391 + AluJo SINE Alu 6 289 -23 2503 90 3 0 chr3 7116049 7116360 -210920798 - AluSp SINE Alu 0 313 2 1200 147 11 11 chr3 7116360 7116543 -210920615 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 7116544 7116591 -210920567 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 7116595 7116699 -210920459 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 7117049 7117281 -210919877 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 7117339 7117399 -210919759 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 7117399 7117709 -210919449 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 7117709 7117921 -210919237 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 7118472 7118640 -210918518 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 7118776 7118961 -210918197 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 7118966 7119289 -210917869 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 7119292 7119479 -210917679 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 7119479 7119772 -210917386 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 7119772 7120647 -210916511 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 7120647 7120946 -210916212 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 7120948 7121123 -210916035 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 7121128 7121344 -210915814 + AluSg/x SINE Alu 80 294 -16 2091 203 95 97 chr3 7121373 7122105 -210915053 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 7122105 7122467 -210914691 - THE1B LTR MaLR -1 363 1 2091 203 95 97 chr3 7122467 7122901 -210914257 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 7122901 7123169 -210913989 + AluJo SINE Alu 6 273 -39 2091 203 95 97 chr3 7123169 7123674 -210913484 + L1MDa LINE L1 2634 3139 -3401 1170 206 65 43 chr3 7123674 7123951 -210913207 + AluJb SINE Alu 3 285 -17 2091 203 95 97 chr3 7123951 7124233 -210912925 + L1MDa LINE L1 3139 3420 -3120 1060 158 0 0 chr3 7124234 7124386 -210912772 - FRAM SINE Alu -25 151 1 1356 217 114 46 chr3 7124386 7124873 -210912285 + L1MDa LINE L1 3407 3859 -2681 2171 113 0 0 chr3 7124873 7125181 -210911977 - AluSx SINE Alu 0 308 1 2230 106 0 0 chr3 7125187 7125501 -210911657 - AluSx SINE Alu 0 314 1 1356 217 114 46 chr3 7125501 7125616 -210911542 + L1MDa LINE L1 3863 4060 -2480 564 311 11 11 chr3 7126869 7127052 -210910106 + HERVI LTR ERV1 788 970 -6815 5253 307 45 46 chr3 7127278 7128240 -210908918 + HERVI LTR ERV1 954 1915 -5870 3215 55 43 5 chr3 7128240 7128661 -210908497 + L1PA5 LINE L1 5717 6153 -1 5253 307 45 46 chr3 7128661 7132107 -210905051 + HERVI LTR ERV1 1915 5756 -2029 2141 301 41 45 chr3 7132999 7134227 -210902931 + HERVI LTR ERV1 6425 7647 -138 2287 136 5 35 chr3 7135134 7135509 -210901649 - THE1B LTR MaLR 0 364 1 682 83 0 0 chr3 7135605 7135701 -210901457 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7136590 7136616 -210900542 + AT_rich Low_complexity Low_complexity 1 26 0 251 202 160 75 chr3 7137184 7137278 -210899880 - MIR SINE MIR -62 146 45 792 160 23 0 chr3 7137797 7137928 -210899230 + AluJo SINE Alu 2 135 -177 2286 115 3 10 chr3 7137946 7138260 -210898898 + AluSx SINE Alu 1 312 0 249 321 274 0 chr3 7138439 7138629 -210898529 - MIR SINE MIR -20 242 1 570 144 11 0 chr3 7139474 7139564 -210897594 + AluSc SINE Alu 194 284 -25 210 37 0 0 chr3 7139569 7139596 -210897562 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2089 112 0 3 chr3 7139596 7139927 -210897231 + AluSx SINE Alu 1 330 0 2279 101 0 0 chr3 7139927 7140214 -210896944 + AluSg SINE Alu 1 287 -23 812 170 69 6 chr3 7140239 7140398 -210896760 + AluSg/x SINE Alu 134 302 -7 2006 139 0 3 chr3 7140535 7140829 -210896329 + AluSx SINE Alu 1 293 -19 1422 164 21 52 chr3 7141749 7142036 -210895122 - AluJb SINE Alu -30 282 5 233 324 184 7 chr3 7142281 7142417 -210894741 + L2 LINE L2 2599 2758 -556 289 366 0 18 chr3 7142563 7142675 -210894483 + L2 LINE L2 3126 3235 -37 189 0 0 0 chr3 7142973 7142994 -210894164 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 246 256 61 12 chr3 7142995 7143077 -210894081 - L2 LINE L2 -18 3295 3210 2035 83 65 7 chr3 7143145 7143422 -210893736 + AluSx SINE Alu 1 293 -19 1604 181 13 32 chr3 7143499 7143808 -210893350 + AluJo SINE Alu 6 308 -4 2467 81 0 0 chr3 7143993 7144289 -210892869 + AluSx SINE Alu 1 296 -16 1865 106 124 4 chr3 7144479 7144754 -210892404 + AluSg SINE Alu 1 308 -2 1712 135 67 28 chr3 7144867 7145149 -210892009 + AluSx SINE Alu 1 293 -19 765 154 0 8 chr3 7145359 7145489 -210891669 + AluJ SINE Alu 1 129 -173 2165 125 0 3 chr3 7145520 7145815 -210891343 + AluSx SINE Alu 1 294 -18 710 175 0 8 chr3 7145828 7145948 -210891210 - FLAM_C SINE Alu -23 120 2 926 184 0 36 chr3 7145966 7146134 -210891024 + AluJ SINE Alu 129 290 -22 1242 130 0 0 chr3 7146342 7146519 -210890639 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7146536 7146778 -210890380 + L1ME4a LINE L1 5538 5835 -286 272 293 113 7 chr3 7146860 7147010 -210890148 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7147016 7147040 -210890118 + AT_rich Low_complexity Low_complexity 1 24 0 2021 94 91 0 chr3 7147501 7147777 -210889381 - AluSg SINE Alu -9 301 1 2344 97 3 0 chr3 7147783 7148093 -210889065 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 7148352 7148373 -210888785 + AT_rich Low_complexity Low_complexity 1 21 0 1805 157 7 20 chr3 7149300 7149600 -210887558 + AluSx SINE Alu 1 296 -16 329 296 53 59 chr3 7150299 7150468 -210886690 + MER5A DNA MER1_type 22 189 0 1802 150 10 20 chr3 7150778 7150911 -210886247 + AluJo SINE Alu 1 134 -178 2209 94 0 70 chr3 7150911 7151242 -210885916 + AluSg SINE Alu 1 308 -2 1802 150 10 20 chr3 7151242 7151401 -210885757 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7152203 7152225 -210884933 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 7152337 7152425 -210884733 + L2 LINE L2 3221 3308 -5 1752 137 53 0 chr3 7152504 7152788 -210884370 + AluJb SINE Alu 1 299 -13 1248 104 0 0 chr3 7152878 7153051 -210884107 + AluSp SINE Alu 132 304 -9 187 111 0 0 chr3 7153611 7153638 -210883520 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 7153927 7154005 -210883153 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 7154005 7154286 -210882872 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 7154286 7154378 -210882780 + MIR SINE MIR 163 262 0 1046 166 0 61 chr3 7154578 7154807 -210882351 + AluJo SINE Alu 1 215 -97 285 151 19 0 chr3 7154809 7154862 -210882296 + AluJo SINE Alu 83 136 -166 1527 111 4 25 chr3 7154884 7155128 -210882030 + AluSq SINE Alu 68 306 -7 242 303 121 0 chr3 7155857 7155956 -210881202 - L2 LINE L2 -1 3271 3161 1211 158 63 60 chr3 7156372 7156657 -210880501 + AluJo SINE Alu 23 308 -4 677 159 0 90 chr3 7157136 7157170 -210879988 - MER94 DNA DNA -1 133 98 2091 110 3 13 chr3 7157170 7157469 -210879689 - AluSx SINE Alu -16 296 1 677 159 0 90 chr3 7157469 7157579 -210879579 - MER94 DNA DNA -36 98 2 2198 157 60 35 chr3 7157618 7158070 -210879088 + MLT1C LTR MaLR 5 467 0 2339 107 22 19 chr3 7158193 7158559 -210878599 - L1PA16 LINE L1 0 6166 5800 2067 118 10 0 chr3 7158560 7158856 -210878302 - AluSq SINE Alu -14 299 1 2132 129 0 0 chr3 7159429 7159740 -210877418 + AluSx SINE Alu 1 311 -1 1989 135 0 3 chr3 7159929 7160233 -210876925 + AluSq SINE Alu 1 303 -10 2050 119 14 0 chr3 7160237 7160531 -210876627 + AluSx SINE Alu 1 298 -14 1789 127 3 67 chr3 7161116 7161431 -210875727 + AluSp SINE Alu 1 295 -18 1989 130 13 0 chr3 7161486 7161785 -210875373 + AluSg SINE Alu 1 303 -7 2496 135 46 14 chr3 7162278 7162678 -210874480 - MER65A LTR ERV1 0 445 29 1905 126 0 0 chr3 7162678 7162949 -210874209 - AluSx SINE Alu -41 271 1 2496 135 46 14 chr3 7162949 7162979 -210874179 - MER65A LTR ERV1 -416 29 1 770 170 7 22 chr3 7163014 7163149 -210874009 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7163227 7163293 -210873865 + GA-rich Low_complexity Low_complexity 4 67 0 345 263 32 0 chr3 7163303 7163398 -210873760 + MER97b DNA MER1_type? 27 124 -929 504 130 6 62 chr3 7163425 7163586 -210873572 + (TCC)n Simple_repeat Simple_repeat 3 154 0 750 138 9 0 chr3 7163592 7163701 -210873457 - FLAM_C SINE Alu -32 111 2 1767 112 6 74 chr3 7163710 7163876 -210873282 - AluSx SINE Alu -21 291 154 2160 78 28 0 chr3 7163876 7164160 -210872998 - AluSg SINE Alu -5 305 14 1767 112 6 74 chr3 7164160 7164305 -210872853 - AluSx SINE Alu -158 154 1 334 191 32 0 chr3 7164309 7164372 -210872786 + MER97a DNA MER1_type? 113 177 -717 877 212 4 100 chr3 7164491 7164732 -210872426 + MER20 DNA MER1_type 2 219 0 363 324 171 0 chr3 7164953 7165123 -210872035 - MIR SINE MIR -12 250 52 803 167 0 14 chr3 7165189 7165327 -210871831 + AluJ SINE Alu 2 137 -175 1014 146 6 0 chr3 7165378 7165549 -210871609 + AluJ SINE Alu 141 312 0 1941 118 24 10 chr3 7165845 7166141 -210871017 - AluSx SINE Alu -12 300 1 1690 171 4 4 chr3 7166381 7166662 -210870496 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr3 7166711 7166733 -210870425 + AT_rich Low_complexity Low_complexity 1 22 0 1318 181 115 0 chr3 7166734 7167022 -210870136 + L1MC2 LINE L1 6002 6322 -22 954 145 0 13 chr3 7167029 7167207 -210869951 - AluSg/x SINE Alu 0 309 134 2254 108 0 0 chr3 7167207 7167514 -210869644 - AluSx SINE Alu -5 307 1 1691 157 13 53 chr3 7167525 7167843 -210869315 - AluSx SINE Alu -7 305 1 449 274 37 22 chr3 7167941 7168066 -210869092 - MIR3 SINE MIR -21 187 58 1922 125 3 27 chr3 7168066 7168363 -210868795 - AluSx SINE Alu -22 290 1 627 197 0 16 chr3 7168572 7168694 -210868464 + FRAM SINE Alu 57 176 0 1831 131 52 3 chr3 7168699 7168989 -210868169 + AluSx SINE Alu 1 304 -8 2070 100 0 0 chr3 7169439 7169718 -210867440 + AluY SINE Alu 1 279 -32 180 0 0 0 chr3 7169720 7169740 -210867418 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 233 213 82 16 chr3 7169807 7169868 -210867290 + LTR8 LTR ERV1 238 302 -389 204 268 52 31 chr3 7170106 7170203 -210866955 - MIR SINE MIR -79 183 85 2104 81 0 32 chr3 7170315 7170624 -210866534 + AluY SINE Alu 12 310 -1 319 276 0 61 chr3 7170678 7170776 -210866382 + L1MC4 LINE L1 6612 6703 -1339 304 205 250 58 chr3 7170764 7170920 -210866238 + L1MC4a LINE L1 5948 6133 -1675 * 2140 121 0 6 chr3 7170951 7171265 -210865893 - AluSx SINE Alu 0 312 1 2213 105 0 0 chr3 7171353 7171648 -210865510 - AluSx SINE Alu -17 295 1 619 307 99 27 chr3 7171695 7171779 -210865379 - L2 LINE L2 -81 3232 3155 1633 157 31 7 chr3 7171779 7172073 -210865085 + AluJo SINE Alu 6 306 -6 619 307 99 27 chr3 7172073 7172444 -210864714 - L2 LINE L2 -158 3155 2739 741 165 8 30 chr3 7172610 7172743 -210864415 + FLAM_C SINE Alu 2 131 -12 324 294 33 11 chr3 7172788 7172880 -210864278 + polypyrimidine Low_complexity Low_complexity 5 98 0 488 239 33 10 chr3 7172884 7173376 -210863782 + CT-rich Low_complexity Low_complexity 1 503 0 1000 230 0 30 chr3 7173479 7173714 -210863444 - AluSq SINE Alu -85 228 1 922 209 90 0 chr3 7173714 7173915 -210863243 - L1MD2 LINE L1 -197 6162 5944 302 245 96 11 chr3 7173915 7174009 -210863149 + MER69 DNA AcHobo 2425 2526 0 1152 94 0 44 chr3 7174291 7174471 -210862687 + AluSc SINE Alu 1 172 -137 181 236 200 18 chr3 7174562 7174617 -210862541 - MIR SINE MIR -160 102 38 189 317 99 49 chr3 7174788 7174930 -210862228 + MIR SINE MIR 3 151 -111 205 298 91 73 chr3 7174987 7175182 -210861976 - MIR SINE MIR -57 205 2 2542 36 0 3 chr3 7175253 7175559 -210861599 + AluY SINE Alu 5 309 -2 1130 118 18 13 chr3 7175559 7175899 -210861259 + MER49 LTR ERV1 152 534 -389 2218 106 3 0 chr3 7175900 7176211 -210860947 - AluSx SINE Alu 0 312 1 1005 86 0 7 chr3 7176213 7176352 -210860806 - AluYb8 SINE Alu -180 138 1 1274 228 59 62 chr3 7176354 7176448 -210860710 + MER49 LTR ERV1 521 614 -309 1993 139 3 3 chr3 7176448 7176758 -210860400 - AluSx SINE Alu -2 310 1 1274 228 59 62 chr3 7176758 7177067 -210860091 + MER49 LTR ERV1 614 923 0 268 152 30 0 chr3 7177176 7177242 -210859916 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 1859 118 21 3 chr3 7178991 7179279 -210857879 - AluSx SINE Alu -19 293 1 865 118 7 29 chr3 7179381 7179517 -210857641 - FLAM_C SINE Alu 0 133 1 1493 158 3 44 chr3 7179575 7179872 -210857286 - AluJo SINE Alu -10 302 18 587 273 126 25 chr3 7180150 7180388 -210856770 + MIR SINE MIR 1 262 0 2154 105 0 0 chr3 7180648 7180944 -210856214 - AluSx SINE Alu -16 296 1 732 144 23 0 chr3 7181007 7181139 -210856019 + L1MA7 LINE L1 6155 6289 -2 422 229 83 57 chr3 7182209 7182366 -210854792 - MIR3 SINE MIR 0 208 48 22 0 0 0 chr3 7182467 7182489 -210854669 + AT_rich Low_complexity Low_complexity 1 22 0 1937 63 0 0 chr3 7182774 7183013 -210854145 + AluY SINE Alu 72 310 -1 1902 94 91 0 chr3 7183019 7183295 -210853863 + AluSg SINE Alu 1 301 -9 24 0 0 0 chr3 7183756 7183780 -210853378 + AT_rich Low_complexity Low_complexity 1 24 0 264 293 113 7 chr3 7183786 7183936 -210853222 - L1ME4a LINE L1 0 6121 5956 303 170 136 78 chr3 7184018 7184260 -210852898 - L1ME4a LINE L1 -286 5835 5538 1177 130 0 0 chr3 7184277 7184454 -210852704 - AluSq SINE Alu -4 309 133 865 184 0 36 chr3 7184662 7184830 -210852328 - AluJ SINE Alu -22 290 129 717 175 0 8 chr3 7184848 7184968 -210852190 + AluJo/FLAM SINE Alu 2 120 -192 2092 137 0 0 chr3 7184968 7185275 -210851883 - AluSx SINE Alu -5 307 1 787 154 0 8 chr3 7185306 7185436 -210851722 - AluJ SINE Alu -173 129 1 1599 135 67 28 chr3 7185646 7185928 -210851230 - AluSx SINE Alu -19 293 1 1754 106 124 4 chr3 7186041 7186316 -210850842 - AluSg SINE Alu -2 308 1 2333 81 0 0 chr3 7186506 7186802 -210850356 - AluSx SINE Alu -16 296 1 1502 181 13 24 chr3 7186987 7187285 -210849873 - AluJo SINE Alu -4 308 14 1913 83 65 7 chr3 7187373 7187650 -210849508 - AluSx SINE Alu -19 293 1 276 256 61 12 chr3 7187718 7187800 -210849358 + L2 LINE L2 3210 3295 -18 189 0 0 0 chr3 7187801 7187822 -210849336 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 335 328 156 16 chr3 7188104 7188232 -210848926 - L2 LINE L2 -1 3271 3126 1319 164 21 52 chr3 7188759 7189046 -210848112 + AluJb SINE Alu 5 282 -30 1891 139 0 3 chr3 7189966 7190260 -210846898 - AluSx SINE Alu -19 293 1 808 165 61 91 chr3 7190395 7190581 -210846577 - AluSg/x SINE Alu -5 305 115 2151 101 0 0 chr3 7190581 7190868 -210846290 - AluSg SINE Alu -23 287 1 374 0 0 21 chr3 7190868 7190915 -210846243 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1945 109 3 3 chr3 7190915 7191199 -210845959 - AluSx SINE Alu -28 284 1 210 37 0 0 chr3 7191199 7191226 -210845932 + (TTA)n Simple_repeat Simple_repeat 3 29 0 808 165 61 91 chr3 7191226 7191266 -210845892 - AluSg/x SINE Alu -191 119 83 389 146 0 0 chr3 7191266 7191321 -210845837 - AluSg/x SINE Alu -52 250 196 320 317 254 5 chr3 7192166 7192371 -210844787 + MIR SINE MIR 1 256 -6 2155 115 3 10 chr3 7192535 7192849 -210844309 - AluSx SINE Alu 0 312 1 799 160 23 0 chr3 7192867 7192998 -210844160 - AluJo SINE Alu -177 135 2 281 210 155 81 chr3 7193477 7193614 -210843544 + MIR SINE MIR 2 146 -62 26 0 0 0 chr3 7194182 7194208 -210842950 + AT_rich Low_complexity Low_complexity 1 26 0 685 83 0 0 chr3 7195097 7195193 -210841965 - AluY SINE Alu -8 303 208 2290 136 5 35 chr3 7195289 7195664 -210841494 + THE1B LTR MaLR 1 364 0 2179 304 39 43 chr3 7196572 7197800 -210839358 - HERVI LTR ERV1 -138 7647 6425 5328 310 45 47 chr3 7198692 7202138 -210835020 - HERVI LTR ERV1 -2029 5756 2139 3213 55 43 5 chr3 7202138 7202559 -210834599 - L1PA5 LINE L1 -1 6153 5717 5328 310 45 47 chr3 7202559 7203510 -210833648 - HERVI LTR ERV1 -5646 2139 1187 1402 222 113 44 chr3 7205181 7205296 -210831862 - L1MDa LINE L1 -2480 4060 3954 2209 106 0 0 chr3 7205296 7205610 -210831548 + AluSx SINE Alu 1 314 0 2153 113 0 0 chr3 7205616 7205924 -210831234 + AluSx SINE Alu 1 308 0 1402 222 113 44 chr3 7205924 7206411 -210830747 - L1MDa LINE L1 -2590 3950 3407 1049 158 0 0 chr3 7206411 7206563 -210830595 + FRAM SINE Alu 1 151 -25 2131 203 95 98 chr3 7206564 7206846 -210830312 - L1MDa LINE L1 -3120 3420 3138 1296 199 65 43 chr3 7206846 7207123 -210830035 - AluJb SINE Alu -17 285 3 2131 203 95 98 chr3 7207123 7207628 -210829530 - L1MDa LINE L1 -3402 3138 2633 1569 187 4 4 chr3 7207628 7207896 -210829262 - AluJo SINE Alu -39 273 6 2131 203 95 98 chr3 7207896 7208330 -210828828 - L1MDa LINE L1 -3907 2633 2199 2183 147 28 22 chr3 7208330 7208691 -210828467 + THE1B LTR MaLR 1 363 -1 2131 203 95 98 chr3 7208691 7209427 -210827731 - L1MDa LINE L1 -4341 2199 1469 1384 134 5 9 chr3 7209456 7209672 -210827486 - AluSg/x SINE Alu -16 296 82 859 149 63 11 chr3 7209677 7209852 -210827306 - L1MB3 LINE L1 -51 6132 5949 1658 127 0 80 chr3 7209854 7210153 -210827005 - AluSx SINE Alu -37 275 1 4866 156 35 41 chr3 7210153 7211028 -210826130 - L1M4c LINE L1 -4608 1776 908 1949 154 0 0 chr3 7211028 7211321 -210825837 - AluSx SINE Alu -19 293 1 4866 156 35 41 chr3 7211321 7211508 -210825650 - L1M4c LINE L1 -5476 908 721 2104 118 3 37 chr3 7211511 7211834 -210825324 - AluSx SINE Alu 0 312 1 1059 119 0 92 chr3 7211839 7212024 -210825134 - AluSx SINE Alu -144 168 1 244 327 18 30 chr3 7212160 7212328 -210824830 - L1MDa LINE L1 -5511 1019 854 284 363 18 33 chr3 7212879 7213091 -210824067 - L1MDa LINE L1 -6223 317 108 1954 132 3 32 chr3 7213091 7213401 -210823757 - AluSx SINE Alu -11 301 1 284 363 18 33 chr3 7213401 7213461 -210823697 - L1MDa LINE L1 -6432 108 49 690 315 17 9 chr3 7213519 7213751 -210823407 - MIR SINE MIR -17 245 12 805 96 0 0 chr3 7214101 7214205 -210822953 + AluJb SINE Alu 7 110 -202 291 128 0 21 chr3 7214209 7214256 -210822902 - AluSp SINE Alu -141 162 117 1174 152 11 11 chr3 7214257 7214440 -210822718 + AluJb SINE Alu 122 307 -5 2489 90 3 0 chr3 7214440 7214751 -210822407 + AluSp SINE Alu 2 313 0 1184 186 53 56 chr3 7216033 7216318 -210820840 - AluJo SINE Alu -23 289 6 210 282 0 0 chr3 7216801 7216840 -210820318 - MIR SINE MIR -133 75 37 185 306 69 14 chr3 7216919 7216991 -210820167 + L2 LINE L2 3019 3094 -219 1234 175 45 65 chr3 7217881 7218104 -210819054 - L1PA16 LINE L1 -6 6160 5943 2141 119 3 0 chr3 7218104 7218397 -210818761 - AluSx SINE Alu -12 300 7 1234 175 45 65 chr3 7218397 7218465 -210818693 - L1PA16 LINE L1 -223 5943 5875 2216 98 0 7 chr3 7218704 7218999 -210818159 + AluSx SINE Alu 2 294 -18 1306 162 43 43 chr3 7219101 7219336 -210817822 + MER8 DNA MER2_type 4 238 -1 1697 235 92 74 chr3 7219533 7220326 -210816832 - L1MC4 LINE L1 -1 8041 7235 2279 105 0 0 chr3 7221159 7221454 -210815704 - AluSc SINE Alu -14 295 1 1983 104 45 3 chr3 7221465 7221754 -210815404 - AluSx SINE Alu -11 301 1 417 264 162 0 chr3 7222072 7222220 -210814938 - MIR3 SINE MIR -4 204 33 346 171 100 0 chr3 7222412 7222482 -210814676 + Tigger7 DNA MER2_type 1 77 -473 1092 101 0 0 chr3 7222501 7222649 -210814509 + Tigger7 DNA MER2_type 2339 2486 -1 516 264 21 7 chr3 7222707 7222847 -210814311 + MIR SINE MIR 73 214 -48 1461 186 13 68 chr3 7223180 7223487 -210813671 - AluJb SINE Alu -22 290 1 191 303 61 15 chr3 7223771 7223837 -210813321 - MIR3 SINE MIR -29 179 111 21 71 0 0 chr3 7224061 7224103 -210813055 + AT_rich Low_complexity Low_complexity 1 42 0 827 176 42 18 chr3 7224188 7224353 -210812805 - L1MB3 LINE L1 -1 6182 6014 1605 194 7 18 chr3 7224359 7224414 -210812744 - L1MB3 LINE L1 -205 5966 5912 393 39 0 0 chr3 7224414 7224465 -210812693 + (TG)n Simple_repeat Simple_repeat 1 51 0 1605 194 7 18 chr3 7224465 7224825 -210812333 - L1MB3 LINE L1 -259 5912 5350 2009 138 6 6 chr3 7225833 7226145 -210811013 - AluSx SINE Alu 0 312 1 2139 95 18 7 chr3 7226458 7226761 -210810397 - AluSq SINE Alu 0 306 1 492 307 81 45 chr3 7228046 7228378 -210808780 - L2 LINE L2 -18 3295 2952 690 120 88 16 chr3 7228429 7228554 -210808604 + MER46A DNA MER2_type 103 236 0 1942 58 81 0 chr3 7228575 7228865 -210808293 + AluY SINE Alu 2 312 0 238 274 0 0 chr3 7229698 7229749 -210807409 + MER6B DNA MER2_type 2 52 -224 539 74 98 0 chr3 7229770 7229933 -210807225 + (TA)n Simple_repeat Simple_repeat 2 180 0 1920 122 15 0 chr3 7229936 7230207 -210806951 - AluSx SINE Alu -24 288 14 874 153 127 0 chr3 7230257 7230407 -210806751 + MER6B DNA MER2_type 37 205 -5 1818 192 68 21 chr3 7230690 7231118 -210806040 - MLT1C LTR MaLR -2 465 18 2156 125 0 3 chr3 7231347 7231651 -210805507 - AluSx SINE Alu -9 303 1 1152 149 123 0 chr3 7231942 7232137 -210805021 + MER20 DNA MER1_type 1 219 0 2344 70 13 0 chr3 7232575 7232873 -210804285 - AluSq SINE Alu -11 302 1 189 0 0 0 chr3 7233470 7233491 -210803667 + (T)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr3 7234819 7234848 -210802310 + AT_rich Low_complexity Low_complexity 1 29 0 371 266 107 35 chr3 7237463 7237632 -210799526 + MIR3 SINE MIR 22 202 -6 2141 86 41 3 chr3 7238028 7238318 -210798840 - AluY SINE Alu -10 301 1 2025 124 14 0 chr3 7238875 7239166 -210797992 - AluSx SINE Alu -16 296 2 841 187 211 32 chr3 7239179 7239577 -210797581 + LTR54B LTR ERV1 2 510 0 426 254 59 0 chr3 7239658 7239776 -210797382 - FAM SINE Alu -26 159 35 231 235 39 0 chr3 7239784 7239835 -210797323 - L1MC/D LINE L1 -2305 5503 5451 1947 134 10 3 chr3 7239901 7240193 -210796965 - AluSx SINE Alu -18 294 1 482 220 197 34 chr3 7240238 7240441 -210796717 - MIR SINE MIR -25 237 17 22 56 0 0 chr3 7242683 7242719 -210794439 + GC_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7243236 7243259 -210793899 + GC_rich Low_complexity Low_complexity 1 23 0 309 283 143 87 chr3 7243365 7243687 -210793471 + L1M2 LINE L1 630 969 -5880 2344 67 3 0 chr3 7244721 7245018 -210792140 - AluY SINE Alu -13 298 1 31 0 0 0 chr3 7245976 7246007 -210791151 + AT_rich Low_complexity Low_complexity 1 31 0 1761 86 9 0 chr3 7246007 7246240 -210790918 - L1MA2 LINE L1 0 6304 6070 1916 144 0 34 chr3 7246329 7246649 -210790509 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 7248034 7248055 -210789103 + AT_rich Low_complexity Low_complexity 1 21 0 2446 84 0 0 chr3 7248717 7249014 -210788144 - AluSq SINE Alu -16 297 1 2025 121 0 0 chr3 7251291 7251572 -210785586 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr3 7251578 7251601 -210785557 + (CA)n Simple_repeat Simple_repeat 2 24 0 221 222 79 32 chr3 7251660 7251723 -210785435 - MIR3 SINE MIR -14 194 129 822 110 17 0 chr3 7252061 7252179 -210784979 - AluSc SINE Alu -26 283 164 201 171 0 0 chr3 7252180 7252215 -210784943 + T-rich Low_complexity Low_complexity 1 35 0 281 219 110 24 chr3 7252237 7252319 -210784839 + L2 LINE L2 3184 3272 0 445 271 7 52 chr3 7252378 7252533 -210784625 - MER103 DNA DNA 0 166 19 1984 154 52 12 chr3 7253997 7254327 -210782831 - MER61A LTR ERV1 0 343 1 840 133 7 53 chr3 7254374 7254525 -210782633 + MLT1B LTR MaLR 239 382 -8 3127 186 25 21 chr3 7254704 7255264 -210781894 - MER68 LTR ERV1 0 562 1 2093 141 3 0 chr3 7255628 7255925 -210781233 - AluJb SINE Alu -14 298 1 234 261 45 81 chr3 7255936 7256047 -210781111 + L2 LINE L2 3199 3305 -8 393 308 60 8 chr3 7256878 7257011 -210780147 - MIR3 SINE MIR -48 160 21 377 245 133 10 chr3 7257401 7257499 -210779659 + L2 LINE L2 3188 3297 -16 2092 158 29 8 chr3 7257507 7257887 -210779271 + MLT1B LTR MaLR 3 390 0 419 257 13 72 chr3 7258664 7258816 -210778342 + MIR SINE MIR 77 219 -43 289 0 148 0 chr3 7258912 7258973 -210778185 + A-rich Low_complexity Low_complexity 6 75 0 389 313 0 0 chr3 7258982 7259081 -210778077 + MIR SINE MIR 34 132 -76 309 289 86 16 chr3 7259584 7259712 -210777446 - L3 LINE CR1 -307 1270 1134 288 263 79 94 chr3 7260509 7260724 -210776434 + MIR SINE MIR 1 218 -44 953 92 0 241 chr3 7260724 7260901 -210776257 + MER5A DNA MER1_type 1 219 30 348 24 0 0 chr3 7260901 7260942 -210776216 + (TG)n Simple_repeat Simple_repeat 2 42 0 2171 120 0 3 chr3 7260947 7261246 -210775912 - AluSx SINE Alu -14 298 1 953 92 0 241 chr3 7261246 7261311 -210775847 + MER5A DNA MER1_type 110 189 0 288 263 79 94 chr3 7261311 7261361 -210775797 + MIR SINE MIR 218 262 0 1606 190 16 29 chr3 7261608 7261924 -210775234 + AluJb SINE Alu 1 312 0 201 304 14 87 chr3 7262048 7262117 -210775041 - L2 LINE L2 -9 3263 3200 773 292 33 17 chr3 7262207 7262447 -210774711 - MIR SINE MIR -1 261 18 467 273 60 105 chr3 7262535 7262887 -210774271 + MLT1I LTR MaLR 74 409 0 2108 115 7 23 chr3 7263015 7263320 -210773838 - AluSx SINE Alu -10 302 3 210 313 0 0 chr3 7264379 7264446 -210772712 + MIR SINE MIR 81 147 -115 239 197 211 14 chr3 7264450 7264521 -210772637 - L2 LINE L2 -2 3311 3227 678 264 73 67 chr3 7264719 7264966 -210772192 - L2 LINE L2 -348 2966 2715 1496 190 48 7 chr3 7264966 7265256 -210771902 - AluJo SINE Alu -10 302 1 678 264 73 67 chr3 7265256 7265352 -210771806 - L2 LINE L2 -599 2715 2621 861 256 106 57 chr3 7265631 7265733 -210771425 - LTR33A LTR ERVL -6 517 421 1954 146 3 0 chr3 7265733 7266027 -210771131 + AluSx SINE Alu 1 295 -17 861 256 106 57 chr3 7266027 7266416 -210770742 - LTR33A LTR ERVL -102 421 2 244 327 55 110 chr3 7267477 7267741 -210769417 - L2 LINE L2 -1 3271 3049 2332 93 3 0 chr3 7267741 7268032 -210769126 - AluSx SINE Alu -20 292 1 244 327 55 110 chr3 7268032 7268290 -210768868 - L2 LINE L2 -223 3049 2779 976 318 130 16 chr3 7268368 7268859 -210768299 - L3 LINE CR1 -188 1389 843 684 266 89 10 chr3 7269157 7269360 -210767798 + MIR SINE MIR 39 257 -5 260 357 9 0 chr3 7269375 7269487 -210767671 - MIR SINE MIR -10 252 140 294 217 39 163 chr3 7270785 7270914 -210766244 + L2 LINE L2 3182 3294 -19 315 279 130 0 chr3 7270978 7271139 -210766019 - MIR SINE MIR 0 262 81 629 246 82 75 chr3 7271685 7271966 -210765192 - MLT1K LTR MaLR -2 586 304 265 265 47 82 chr3 7271970 7272140 -210765018 - MLT1J2 LTR MaLR 0 450 287 248 323 0 0 chr3 7272433 7272495 -210764663 - MLT1K LTR MaLR -347 241 180 1442 257 73 35 chr3 7272511 7272910 -210764248 - L2 LINE L2 -2 3311 2929 1675 188 27 48 chr3 7272910 7273283 -210763875 + MLT1A1 LTR MaLR 1 365 0 1442 257 73 35 chr3 7273283 7273632 -210763526 - L2 LINE L2 -384 2929 2526 300 345 67 8 chr3 7273635 7273754 -210763404 - MLT1K LTR MaLR -401 187 62 376 298 35 0 chr3 7273786 7273900 -210763258 - MLT1I LTR MaLR -4 405 288 1210 213 30 4 chr3 7273988 7274350 -210762808 - MER74A LTR ERVL -90 468 14 721 167 25 0 chr3 7274354 7274474 -210762684 + FAM SINE Alu 1 40 -9 415 291 15 65 chr3 7274516 7274715 -210762443 - MLT1I LTR MaLR -141 268 80 1201 210 258 76 chr3 7275024 7275525 -210761633 - MLT1G1 LTR MaLR -1 594 3 195 288 61 0 chr3 7275613 7275679 -210761479 + L2 LINE L2 3154 3223 -49 1304 264 124 30 chr3 7275725 7276251 -210760907 + MLT1L LTR MaLR 41 615 0 277 211 67 96 chr3 7277042 7277229 -210759929 - LOR1a LTR ERV1 0 603 310 477 0 0 0 chr3 7277474 7277527 -210759631 + (CA)n Simple_repeat Simple_repeat 2 54 0 249 293 211 48 chr3 7277800 7277947 -210759211 + MLT1K LTR MaLR 350 520 -68 1868 172 0 10 chr3 7278473 7278787 -210758371 - AluSx SINE Alu -1 311 1 552 272 0 0 chr3 7278889 7279003 -210758155 + MER81 DNA DNA 1 114 0 368 289 44 0 chr3 7279036 7279126 -210758032 - L2 LINE L2 -17 3255 3162 1380 235 102 40 chr3 7279365 7279722 -210757436 + LTR16A1 LTR ERVL 1 391 -66 2111 163 10 61 chr3 7279722 7280133 -210757025 + MLT1B LTR MaLR 1 390 0 1380 235 102 40 chr3 7280133 7280205 -210756953 + LTR16A1 LTR ERVL 391 457 0 4316 84 14 9 chr3 7280659 7281230 -210755928 + L1PA10 LINE L1 5592 6165 -3 339 258 31 69 chr3 7281272 7281431 -210755727 + MIR SINE MIR 109 261 -1 349 143 0 0 chr3 7281515 7281571 -210755587 - MER63 DNA MER1_type -36 1025 970 303 219 41 0 chr3 7281590 7281663 -210755495 - MER63 DNA MER1_type -128 708 7 6002 41 0 3 chr3 7281970 7282652 -210754506 - L1PA5 LINE L1 -1 6153 5474 437 69 0 0 chr3 7282654 7282712 -210754446 + L1P2 LINE L1 3697 3754 -2392 6638 33 0 0 chr3 7282844 7283727 -210753431 + L1P2 LINE L1 4603 5485 -669 217 297 55 22 chr3 7283879 7283970 -210753188 + MIR3 SINE MIR 101 194 -14 225 359 60 17 chr3 7283996 7284113 -210753045 + L2 LINE L2 3141 3262 -10 840 102 0 121 chr3 7284616 7284782 -210752376 - THE1C LTR MaLR 0 375 230 2278 78 7 0 chr3 7284783 7285079 -210752079 - AluY SINE Alu -13 298 1 1983 104 45 3 chr3 7285090 7285379 -210751779 - AluSx SINE Alu -11 301 1 417 264 162 0 chr3 7285697 7285845 -210751313 - MIR3 SINE MIR -4 204 33 346 171 100 0 chr3 7286037 7286107 -210751051 + Tigger7 DNA MER2_type 1 77 -473 1092 101 0 0 chr3 7286126 7286274 -210750884 + Tigger7 DNA MER2_type 2343 2490 -1 516 264 21 7 chr3 7286332 7286472 -210750686 + MIR SINE MIR 73 214 -48 1461 186 13 68 chr3 7286805 7287112 -210750046 - AluJb SINE Alu -22 290 1 191 303 61 15 chr3 7287397 7287463 -210749695 - MIR3 SINE MIR -29 179 111 21 71 0 0 chr3 7287687 7287729 -210749429 + AT_rich Low_complexity Low_complexity 1 42 0 878 174 30 18 chr3 7287814 7287981 -210749177 - L1MB3 LINE L1 -1 6182 6014 1605 194 7 18 chr3 7287987 7288042 -210749116 - L1MB3 LINE L1 -205 5966 5912 393 39 0 0 chr3 7288042 7288093 -210749065 + (TG)n Simple_repeat Simple_repeat 1 51 0 1605 194 7 18 chr3 7288093 7288453 -210748705 - L1MB3 LINE L1 -259 5912 5350 1924 143 7 7 chr3 7289472 7289773 -210747385 - AluSx SINE Alu -11 301 1 2139 95 18 7 chr3 7290087 7290390 -210746768 - AluSq SINE Alu 0 306 1 431 289 84 66 chr3 7291673 7292054 -210745104 - L2 LINE L2 -18 3295 2908 2457 102 12 86 chr3 7292217 7292327 -210744831 - MER4A LTR ERV1 -172 492 375 2035 128 3 13 chr3 7292327 7292633 -210744525 - AluSx SINE Alu -9 303 1 2457 102 12 86 chr3 7292633 7293094 -210744064 - MER4A LTR ERV1 -289 375 1 2065 121 28 0 chr3 7294225 7294514 -210742644 - AluSx SINE Alu -13 299 3 291 268 97 48 chr3 7294642 7294911 -210742247 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 7295152 7295183 -210741975 + AT_rich Low_complexity Low_complexity 1 31 0 1125 138 29 0 chr3 7295183 7295357 -210741801 - AluJb SINE Alu -13 299 121 1485 181 42 21 chr3 7295447 7295734 -210741424 - AluJo SINE Alu -19 293 1 268 180 67 90 chr3 7297903 7297992 -210739166 - L1MC5 LINE L1 -44 7917 7831 1683 189 7 3 chr3 7298014 7298316 -210738842 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 7298511 7298546 -210738612 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 7298622 7298645 -210738513 + AT_rich Low_complexity Low_complexity 1 23 0 1774 158 0 55 chr3 7298646 7298976 -210738182 - AluJb SINE Alu 0 312 1 229 296 25 12 chr3 7298998 7299079 -210738079 - L1ME4a LINE L1 -463 5658 5577 1629 214 81 29 chr3 7299683 7300215 -210736943 - MLT1F1 LTR MaLR 0 567 2 2346 97 0 0 chr3 7300491 7300790 -210736368 - AluSg SINE Alu -11 299 1 2107 123 0 3 chr3 7301783 7302092 -210735066 - AluSx SINE Alu -4 308 1 332 180 0 0 chr3 7303444 7303505 -210733653 - MLT2B1 LTR ERVL -4 516 456 * 1570 206 81 22 chr3 7303504 7303876 -210733282 - MLT2D LTR ERVL -20 534 1 5495 167 23 13 chr3 7304327 7305790 -210731368 + L1P5 LINE L1 4129 5608 -543 2430 77 0 3 chr3 7305790 7306089 -210731069 + AluY SINE Alu 1 298 -13 5495 167 23 13 chr3 7306089 7306253 -210730905 + L1P5 LINE L1 5608 5769 -382 991 337 33 19 chr3 7306661 7306714 -210730444 + L1M3c LINE L1 959 1010 -6088 198 0 0 0 chr3 7306714 7306736 -210730422 + (CA)n Simple_repeat Simple_repeat 1 22 0 991 337 33 19 chr3 7306736 7307109 -210730049 + L1M3c LINE L1 1010 1391 -5707 225 283 92 33 chr3 7307269 7307389 -210729769 + L1M3c LINE L1 1681 1807 -5361 3270 247 110 22 chr3 7307918 7308374 -210728784 + L1M3c LINE L1 1902 2316 -4851 7800 51 6 10 chr3 7308374 7309915 -210727243 + SVA Other Other 7 1385 -1 3270 247 110 22 chr3 7309915 7311720 -210725438 + L1M3c LINE L1 2316 3990 -3177 1809 162 3 17 chr3 7311720 7312010 -210725148 + AluJb SINE Alu 5 290 -22 3270 247 110 22 chr3 7312010 7312170 -210724988 + L1M3c LINE L1 3990 4134 -3033 1164 197 92 4 chr3 7312170 7312409 -210724749 + AluJo SINE Alu 1 260 -52 449 117 57 0 chr3 7312465 7312548 -210724610 - L1M2 LINE L1 -4352 1683 1346 6194 177 29 7 chr3 7312586 7313810 -210723348 + L1M3c LINE L1 4125 5375 -1792 1793 285 18 7 chr3 7313842 7314361 -210722797 - L1M2 LINE L1 -5251 704 1 227 317 45 22 chr3 7314463 7314687 -210722471 - L1M4 LINE L1 -3065 3081 2853 371 262 0 48 chr3 7315051 7315154 -210722004 + MIR SINE MIR 44 141 -67 282 253 121 96 chr3 7315392 7315590 -210721568 + MIR SINE MIR 19 221 -41 1137 130 6 0 chr3 7316321 7316490 -210720668 + AluSg/x SINE Alu 131 300 -10 1083 256 108 42 chr3 7317006 7317439 -210719719 + MLT1C LTR MaLR 5 466 -1 384 132 40 53 chr3 7317508 7317584 -210719574 - LTR65 LTR ERV1 -256 413 339 381 312 85 0 chr3 7318309 7318450 -210718708 + Charlie8 DNA MER1_type 113 265 -2152 2188 186 9 30 chr3 7318586 7319015 -210718143 - MLT1E2 LTR MaLR 0 626 207 3497 98 11 7 chr3 7319084 7319534 -210717624 - MLT2A2 LTR ERVL 0 453 2 1251 238 19 7 chr3 7319541 7319848 -210717310 + L1ME2 LINE L1 5840 6150 -14 195 42 0 0 chr3 7319875 7319899 -210717259 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1607 192 6 41 chr3 7319952 7320269 -210716889 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr3 7320898 7320920 -210716238 + AT_rich Low_complexity Low_complexity 1 22 0 293 324 22 7 chr3 7320983 7321119 -210716039 + MIR3 SINE MIR 57 194 -14 1292 212 33 29 chr3 7321204 7321510 -210715648 - MER58B DNA MER1_type 0 341 35 340 290 145 32 chr3 7321756 7322004 -210715154 + MLT1J LTR MaLR 1 276 -273 1533 286 82 8 chr3 7322117 7322593 -210714565 + MLT1E LTR MaLR 3 513 -80 470 216 22 65 chr3 7322641 7322780 -210714378 + MLT1J LTR MaLR 379 511 0 1797 147 3 20 chr3 7323135 7323428 -210713730 + AluSx SINE Alu 13 300 -12 281 275 57 9 chr3 7324763 7324877 -210712281 + MIR SINE MIR 36 154 -59 721 205 98 48 chr3 7324878 7325198 -210711960 - LTR37B LTR ERV1 0 468 125 796 220 43 0 chr3 7325288 7325502 -210711656 + MER58C DNA MER1_type 12 215 0 321 284 22 37 chr3 7326513 7326647 -210710511 + Charlie8 DNA MER1_type 61 192 -2225 291 215 11 108 chr3 7326663 7326729 -210710429 + MER5A DNA MER1_type 9 65 -124 2132 124 3 10 chr3 7326729 7327035 -210710123 + AluSx SINE Alu 1 304 -8 291 215 11 108 chr3 7327035 7327061 -210710097 + MER5A DNA MER1_type 65 92 -97 185 302 0 0 chr3 7327439 7327482 -210709676 + L2 LINE L2 3218 3260 -12 266 234 13 78 chr3 7327555 7327632 -210709526 + L2 LINE L2 3175 3246 -26 181 325 149 9 chr3 7327715 7327829 -210709329 - L2 LINE L2 -14 3299 3170 261 161 77 51 chr3 7327900 7327992 -210709166 - MLT1H LTR MaLR -18 572 281 346 192 51 0 chr3 7328056 7328134 -210709024 - MLT1H LTR MaLR -229 320 239 2239 111 16 3 chr3 7328167 7328474 -210708684 + AluSx SINE Alu 1 311 -1 531 288 18 12 chr3 7328811 7328974 -210708184 - MLT1H LTR MaLR -374 175 12 491 274 39 17 chr3 7329146 7329325 -210707833 - MIR SINE MIR -3 259 77 246 250 0 0 chr3 7330224 7330284 -210706874 + A-rich Low_complexity Low_complexity 1 60 0 448 290 33 49 chr3 7330305 7330488 -210706670 + MER117 DNA MER1_type 2 181 -16 1564 164 53 37 chr3 7330629 7330928 -210706230 + AluJo SINE Alu 1 304 -8 1554 196 39 0 chr3 7330949 7331235 -210705923 + AluJo SINE Alu 11 307 -5 233 169 0 84 chr3 7331866 7331937 -210705221 + T-rich Low_complexity Low_complexity 3 67 0 267 114 0 0 chr3 7331939 7331983 -210705175 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1847 153 33 0 chr3 7331983 7332304 -210704854 - AluJb SINE Alu 0 331 1 893 208 133 123 chr3 7332661 7333232 -210703926 - LTR8A LTR ERV1 -150 577 1 2022 115 11 0 chr3 7333348 7333707 -210703451 + AluSg SINE Alu 1 362 0 2230 121 3 0 chr3 7333771 7334069 -210703089 + AluSx SINE Alu 1 299 -13 1688 159 41 14 chr3 7334756 7335046 -210702112 + AluJo SINE Alu 1 298 -14 2361 64 0 3 chr3 7335149 7335458 -210701700 + AluY SINE Alu 1 308 0 1788 174 0 17 chr3 7335462 7335760 -210701398 + AluJb SINE Alu 1 293 -19 1080 114 27 0 chr3 7335975 7336124 -210701034 - AluSg/x SINE Alu -16 296 144 1092 266 58 0 chr3 7336124 7336432 -210700726 - MLT1B LTR MaLR -63 327 2 976 275 135 26 chr3 7336898 7337284 -210699874 - L2 LINE L2 0 3313 2886 533 267 0 8 chr3 7337288 7337419 -210699739 - AluJb SINE Alu -1 311 182 2118 229 66 57 chr3 7337434 7338044 -210699114 + MLT1E2 LTR MaLR 10 624 -2 531 273 50 0 chr3 7338076 7338237 -210698921 - L2 LINE L2 -420 2894 2726 269 318 95 0 chr3 7339575 7339701 -210697457 + MIR SINE MIR 117 254 -8 1924 168 10 0 chr3 7339912 7340222 -210696936 + 7SLRNA srpRNA srpRNA 1 313 -7 388 238 277 43 chr3 7340346 7340602 -210696556 - L2 LINE L2 -4 3309 2994 335 321 37 0 chr3 7340959 7341093 -210696065 - MIR SINE MIR 0 262 124 371 290 80 71 chr3 7341173 7341264 -210695894 + L3 LINE CR1 1115 1204 -373 2060 134 0 0 chr3 7341264 7341554 -210695604 + AluSx SINE Alu 1 290 -22 371 290 80 71 chr3 7341554 7341700 -210695458 + L3 LINE CR1 1204 1354 -223 350 264 38 9 chr3 7341701 7341807 -210695351 + LTR16A1 LTR ERVL 11 119 -338 234 0 0 0 chr3 7342007 7342033 -210695125 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2496 43 7 0 chr3 7343125 7343430 -210693728 - AluY SINE Alu -4 307 1 280 157 0 0 chr3 7343499 7343550 -210693608 - L1MB8 LINE L1 -4 6174 6124 1438 171 144 4 chr3 7343564 7343827 -210693331 - AluSg SINE Alu 0 300 1 22 0 0 0 chr3 7343827 7343849 -210693309 + AT_rich Low_complexity Low_complexity 1 22 0 2359 147 34 0 chr3 7343849 7344202 -210692956 - L1PA16 LINE L1 -9 6157 5793 322 132 38 0 chr3 7344202 7344255 -210692903 - L1MB8 LINE L1 -41 6137 6083 213 39 0 0 chr3 7344779 7344805 -210692353 + (CA)n Simple_repeat Simple_repeat 2 27 0 293 206 88 49 chr3 7344922 7345024 -210692134 + MER5A DNA MER1_type 81 186 -3 238 115 39 0 chr3 7345414 7345466 -210691692 + (CA)n Simple_repeat Simple_repeat 1 54 0 299 117 33 0 chr3 7345557 7345617 -210691541 + MER53 DNA DNA 3 64 -125 229 247 59 0 chr3 7345616 7345701 -210691457 - MER53 DNA DNA -89 100 11 * 1797 128 139 0 chr3 7345907 7346181 -210690977 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 7346187 7346211 -210690947 + AT_rich Low_complexity Low_complexity 1 24 0 202 267 0 0 chr3 7346453 7346498 -210690660 + MER91 DNA MER1_type 1 45 -151 1466 235 102 55 chr3 7346814 7347304 -210689854 + MLT1G LTR MaLR 8 520 -70 7572 58 3 3 chr3 7347840 7349328 -210687830 - L1PA7 LINE L1 0 6154 4668 4838 79 10 22 chr3 7349593 7350761 -210686397 + SVA Other Other 1 1386 0 22 70 0 0 chr3 7351148 7351191 -210685967 + AT_rich Low_complexity Low_complexity 1 43 0 708 219 8 0 chr3 7351260 7351379 -210685779 + FLAM_A SINE Alu 1 120 -13 294 282 39 19 chr3 7351918 7352021 -210685137 + MIR3 SINE MIR 54 158 -50 615 247 14 0 chr3 7352125 7352271 -210684887 - MER103 DNA DNA 0 166 19 2340 107 0 0 chr3 7352607 7352906 -210684252 + AluSx SINE Alu 1 299 -13 346 222 25 0 chr3 7353209 7353290 -210683868 + MER117 DNA MER1_type 75 157 -40 992 60 26 27 chr3 7353439 7353952 -210683206 + (TG)n Simple_repeat Simple_repeat 1 512 0 669 228 39 22 chr3 7354580 7354760 -210682398 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7354971 7355210 -210681948 + L2 LINE L2 2734 2977 -337 2508 59 0 3 chr3 7355279 7355583 -210681575 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7355592 7355872 -210681286 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7355875 7355926 -210681232 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7356044 7356497 -210680661 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7356526 7356554 -210680604 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7356554 7356597 -210680561 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7356597 7356714 -210680444 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7357485 7357590 -210679568 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7357963 7358140 -210679018 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7358400 7358699 -210678459 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7358725 7358888 -210678270 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7358888 7359190 -210677968 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7359198 7359384 -210677774 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7359417 7359584 -210677574 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7359584 7359820 -210677338 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7359820 7360097 -210677061 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7360218 7360308 -210676850 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7360878 7360997 -210676161 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7362139 7362204 -210674954 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7362204 7362744 -210674414 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7362744 7363071 -210674087 - MLT1K LTR MaLR -125 463 126 287 204 21 0 chr3 7363290 7363383 -210673775 + (TTCA)n Simple_repeat Simple_repeat 3 97 0 292 225 113 0 chr3 7363415 7363486 -210673672 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7363503 7363919 -210673239 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7364159 7364288 -210672870 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7364808 7364958 -210672200 - MIR SINE MIR -74 188 21 880 175 23 0 chr3 7365412 7365583 -210671575 - FRAM SINE Alu -1 175 1 2009 123 0 3 chr3 7366577 7366886 -210670272 - AluSx SINE Alu -4 308 1 213 189 0 0 chr3 7367813 7367850 -210669308 + (TG)n Simple_repeat Simple_repeat 2 38 0 446 271 7 52 chr3 7368341 7368496 -210668662 + MER103 DNA DNA 19 166 0 292 219 110 24 chr3 7368555 7368637 -210668521 - L2 LINE L2 0 3272 3184 913 105 14 0 chr3 7368695 7368838 -210668320 + AluSc SINE Alu 164 308 -1 228 222 79 32 chr3 7369152 7369215 -210667943 + MIR3 SINE MIR 129 194 -14 207 0 0 0 chr3 7369274 7369297 -210667861 + (TG)n Simple_repeat Simple_repeat 2 24 0 1940 121 0 0 chr3 7369302 7369584 -210667574 - AluSx SINE Alu -30 282 1 2339 84 0 0 chr3 7371863 7372160 -210664998 + AluSq SINE Alu 1 297 -16 21 0 0 0 chr3 7372822 7372843 -210664315 + AT_rich Low_complexity Low_complexity 1 21 0 1808 147 0 34 chr3 7374228 7374548 -210662610 + AluJo SINE Alu 1 309 -3 1669 86 9 0 chr3 7374637 7374870 -210662288 + L1MA2 LINE L1 6070 6304 0 31 0 0 0 chr3 7374870 7374901 -210662257 + AT_rich Low_complexity Low_complexity 1 31 0 2160 64 4 0 chr3 7375859 7376140 -210661018 + AluY SINE Alu 1 282 -29 27 0 0 0 chr3 7377408 7377435 -210659723 + GC_rich Low_complexity Low_complexity 1 27 0 244 307 89 9 chr3 7379333 7379558 -210657600 - L1ME4a LINE L1 0 6121 5879 291 71 0 0 chr3 7380503 7380545 -210656613 + (TG)n Simple_repeat Simple_repeat 2 43 0 430 280 42 52 chr3 7380553 7380746 -210656412 - MIR3 SINE MIR -15 193 3 231 291 39 48 chr3 7380968 7381071 -210656087 + MER5A DNA MER1_type 88 189 0 253 284 155 26 chr3 7381345 7381500 -210655658 + MIR3 SINE MIR 1 175 -33 299 272 62 0 chr3 7381709 7381790 -210655368 - L2 LINE L2 -37 3235 3150 287 267 28 128 chr3 7381843 7382023 -210655135 - MER5B DNA MER1_type -14 164 3 231 299 21 21 chr3 7382453 7382550 -210654608 - LTR33 LTR ERVL -14 507 411 237 139 0 0 chr3 7382817 7382853 -210654305 - LTR33 LTR ERVL -483 38 3 712 215 135 35 chr3 7383402 7383602 -210653556 - MIR SINE MIR 0 262 43 299 275 142 8 chr3 7383806 7383926 -210653232 - L2 LINE L2 -214 3058 2923 871 200 62 19 chr3 7384398 7384608 -210652550 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr3 7385142 7385165 -210651993 + AT_rich Low_complexity Low_complexity 1 23 0 571 229 41 0 chr3 7385165 7385287 -210651871 - FLAM_A SINE Alu -6 127 1 25 0 0 0 chr3 7386597 7386622 -210650536 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 7387209 7387230 -210649928 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 7387700 7387721 -210649437 + AT_rich Low_complexity Low_complexity 1 21 0 2111 109 0 3 chr3 7389389 7389693 -210647465 - AluSx SINE Alu -6 306 4 690 210 50 22 chr3 7390017 7390198 -210646960 + MIR SINE MIR 28 213 -49 330 296 111 19 chr3 7390281 7390443 -210646715 + MIR SINE MIR 19 195 -67 273 109 0 0 chr3 7390708 7390754 -210646404 + (TG)n Simple_repeat Simple_repeat 1 46 0 3106 123 115 17 chr3 7390934 7391523 -210645635 - LTR24C LTR ERV1 -1 594 2 2018 213 164 41 chr3 7392101 7392574 -210644584 - Charlie2a DNA MER1_type -144 2718 2305 2215 115 0 3 chr3 7392574 7392886 -210644272 - AluJo SINE Alu -1 311 1 2018 213 164 41 chr3 7392886 7393295 -210643863 - Charlie2a DNA MER1_type -557 2305 1727 2335 124 48 3 chr3 7393298 7393669 -210643489 - Tigger2 DNA MER2_type 0 2718 2331 321 100 0 0 chr3 7393675 7393725 -210643433 + (TG)n Simple_repeat Simple_repeat 2 51 0 749 221 0 0 chr3 7393727 7393872 -210643286 - AluSg/x SINE Alu -31 281 137 2140 153 103 7 chr3 7393878 7394303 -210642855 - Tigger2 DNA MER2_type -2252 466 1 801 250 35 0 chr3 7394303 7394503 -210642655 - Charlie2a DNA MER1_type -1136 1726 1520 * 2634 80 33 145 chr3 7394498 7394701 -210642457 - MER39B LTR ERV1 -200 453 229 772 191 8 0 chr3 7394701 7394858 -210642300 - FLAM_C SINE Alu 0 158 1 2634 80 33 145 chr3 7394858 7394903 -210642255 - MER39B LTR ERV1 -424 229 181 930 113 0 0 chr3 7394903 7395027 -210642131 - FLAM_C SINE Alu -9 124 1 2634 80 33 145 chr3 7395027 7395286 -210641872 - MER39B LTR ERV1 -472 181 1 1211 140 45 0 chr3 7395561 7395761 -210641397 + L1MA5A LINE L1 6085 6293 -4 2087 107 7 3 chr3 7395909 7396200 -210640958 - AluSq SINE Alu -21 292 1 911 176 23 0 chr3 7396391 7396567 -210640591 + FRAM SINE Alu 1 175 -1 479 233 133 13 chr3 7397021 7397171 -210639987 + MIR SINE MIR 21 188 -74 520 171 202 0 chr3 7397691 7397820 -210639338 + MER5A DNA MER1_type 6 160 -29 2654 123 31 2 chr3 7398060 7398476 -210638682 + MSTA LTR MaLR 1 428 0 292 225 113 0 chr3 7398493 7398564 -210638594 - L2 LINE L2 0 3272 3194 261 225 0 0 chr3 7398579 7398668 -210638490 + (TAAA)n Simple_repeat Simple_repeat 2 90 0 798 267 89 71 chr3 7398886 7399213 -210637945 + MLT1K LTR MaLR 126 463 -125 3517 128 4 28 chr3 7399213 7399753 -210637405 + MER1A DNA MER1_type 1 527 0 798 267 89 71 chr3 7399753 7399818 -210637340 + MLT1K LTR MaLR 463 525 -63 402 216 43 126 chr3 7400856 7400960 -210636198 - MER106A DNA MER1_type -2 234 123 691 228 0 0 chr3 7400960 7401083 -210636075 - FLAM_A SINE Alu -10 123 1 402 216 43 126 chr3 7401083 7401233 -210635925 - MER106A DNA MER1_type -113 123 1 476 207 122 49 chr3 7401233 7401397 -210635761 - MIR SINE MIR -17 245 70 730 292 142 14 chr3 7401514 7401795 -210635363 - MER77 LTR ERV1 -11 594 278 180 0 0 0 chr3 7401796 7401816 -210635342 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 2339 152 6 0 chr3 7401824 7402160 -210634998 - MER1B DNA MER1_type -1 338 1 240 188 277 0 chr3 7402160 7402261 -210634897 - MER77 LTR ERV1 -333 272 144 836 155 39 19 chr3 7402327 7402482 -210634676 + MLT1D LTR MaLR 329 486 -19 269 361 28 24 chr3 7402477 7402690 -210634468 + AluJo SINE Alu 32 245 -57 * 239 184 118 0 chr3 7402921 7402997 -210634161 - MER77 LTR ERV1 -377 228 144 781 160 40 20 chr3 7403063 7403213 -210633945 + MLT1D LTR MaLR 329 481 -24 1653 158 0 0 chr3 7403213 7403473 -210633685 + AluJo SINE Alu 32 291 -21 281 358 9 18 chr3 7403523 7403632 -210633526 - MIR SINE MIR -141 121 14 2103 104 3 0 chr3 7403713 7404000 -210633158 - AluSq SINE Alu -25 288 1 385 229 99 15 chr3 7404385 7404516 -210632642 - LTR16A1 LTR ERVL -3 454 313 234 220 20 140 chr3 7404631 7404731 -210632427 - LTR16A1 LTR ERVL -350 107 20 1000 251 127 39 chr3 7405330 7405607 -210631551 + MLT1F1 LTR MaLR 104 415 -152 1573 122 80 0 chr3 7405607 7405844 -210631314 - AluSx SINE Alu -13 299 44 1000 251 127 39 chr3 7405844 7406011 -210631147 + MLT1F1 LTR MaLR 415 566 -1 536 145 0 0 chr3 7406281 7406357 -210630801 - FRAM/FAM SINE Alu -102 74 1 25 0 0 0 chr3 7407664 7407689 -210629469 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 7408765 7408786 -210628372 + AT_rich Low_complexity Low_complexity 1 21 0 2107 107 0 3 chr3 7410454 7410753 -210626405 - AluSx SINE Alu -11 301 4 682 210 50 22 chr3 7411077 7411258 -210625900 + MIR SINE MIR 28 213 -49 330 296 111 19 chr3 7411341 7411503 -210625655 + MIR SINE MIR 19 195 -67 345 93 0 0 chr3 7411768 7411822 -210625336 + (TG)n Simple_repeat Simple_repeat 1 54 0 3104 125 115 17 chr3 7412002 7412591 -210624567 - LTR24C LTR ERV1 -1 594 2 1954 214 171 41 chr3 7413169 7413637 -210623521 - Charlie2a DNA MER1_type -144 2718 2312 2222 113 0 3 chr3 7413637 7413947 -210623211 - AluJo SINE Alu -3 309 1 1954 214 171 41 chr3 7413947 7414356 -210622802 - Charlie2a DNA MER1_type -550 2312 1727 2335 124 48 3 chr3 7414359 7414730 -210622428 - Tigger2 DNA MER2_type 0 2718 2331 228 35 0 0 chr3 7414736 7414765 -210622393 + (TG)n Simple_repeat Simple_repeat 1 29 0 766 216 0 0 chr3 7414775 7414923 -210622235 - AluSg/x SINE Alu -28 282 135 2157 156 104 5 chr3 7414929 7415353 -210621805 - Tigger2 DNA MER2_type -2252 466 1 802 238 31 36 chr3 7415353 7415576 -210621582 - Charlie2a DNA MER1_type -1136 1726 1505 * 2892 90 37 62 chr3 7415548 7415751 -210621407 - MER39B LTR ERV1 -200 453 246 958 194 105 112 chr3 7415751 7416082 -210621076 - AluSx SINE Alu 0 329 1 2892 90 37 62 chr3 7416082 7416341 -210620817 - MER39B LTR ERV1 -407 246 1 1224 135 45 0 chr3 7416616 7416816 -210620342 + L1MA5A LINE L1 6085 6293 -4 2057 113 7 3 chr3 7416964 7417255 -210619903 - AluSq SINE Alu -21 292 1 911 176 23 0 chr3 7417446 7417622 -210619536 + FRAM SINE Alu 1 175 -1 479 233 133 13 chr3 7418076 7418226 -210618932 + MIR SINE MIR 21 188 -74 520 171 202 0 chr3 7418746 7418875 -210618283 + MER5A DNA MER1_type 6 160 -29 2670 120 31 2 chr3 7419115 7419531 -210617627 + MSTA LTR MaLR 1 428 0 292 225 113 0 chr3 7419548 7419619 -210617539 - L2 LINE L2 0 3272 3194 290 216 0 18 chr3 7419634 7419745 -210617413 + (TAAA)n Simple_repeat Simple_repeat 2 110 0 798 267 89 71 chr3 7419963 7420290 -210616868 + MLT1K LTR MaLR 126 463 -125 3531 126 4 28 chr3 7420290 7420830 -210616328 + MER1A DNA MER1_type 1 527 0 798 267 89 71 chr3 7420830 7420895 -210616263 + MLT1K LTR MaLR 463 525 -63 669 227 0 0 chr3 7422037 7422156 -210615002 - FLAM_A SINE Alu -10 123 5 266 333 11 0 chr3 7422726 7422816 -210614342 + MLT1F1 LTR MaLR 5 95 -498 1011 243 109 76 chr3 7422938 7423215 -210613943 + MLT1F1 LTR MaLR 104 406 -161 1506 136 81 0 chr3 7423215 7423451 -210613707 - AluSx SINE Alu -14 298 44 1011 243 109 76 chr3 7423451 7423618 -210613540 + MLT1F1 LTR MaLR 406 566 -1 299 269 172 27 chr3 7423651 7423837 -210613321 - L1ME4a LINE L1 -227 5894 5682 2563 40 0 0 chr3 7423845 7424147 -210613011 + AluYb8 SINE Alu 1 302 -16 1172 98 0 0 chr3 7424147 7424310 -210612848 + AluYa5 SINE Alu 133 295 -16 1960 154 0 0 chr3 7424336 7424635 -210612523 + AluSx SINE Alu 1 299 -13 794 254 11 0 chr3 7424895 7425072 -210612086 - MER5A DNA MER1_type -8 181 3 333 295 19 9 chr3 7425445 7425550 -210611608 + MLT1K LTR MaLR 477 582 -6 278 301 68 62 chr3 7426321 7426438 -210610720 - L2 LINE L2 -1 3312 3192 354 23 0 0 chr3 7426438 7426481 -210610677 + (GA)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7426481 7426509 -210610649 - L2 LINE L2 -121 3192 3166 948 236 75 77 chr3 7426538 7426991 -210610167 + MER110A LTR ERV1 3 454 -14 459 0 0 0 chr3 7427109 7427160 -210609998 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2083 100 4 0 chr3 7427163 7427443 -210609715 - AluSx SINE Alu -30 282 2 2401 59 0 3 chr3 7427452 7427756 -210609402 - AluY SINE Alu -8 303 1 283 301 67 46 chr3 7427825 7428064 -210609094 - L2 LINE L2 -337 2977 2734 661 228 39 22 chr3 7428275 7428455 -210608703 - MER3 DNA MER1_type -26 183 1 919 56 17 39 chr3 7429081 7429339 -210607819 + (CA)n Simple_repeat Simple_repeat 1 252 0 585 144 40 0 chr3 7429526 7429651 -210607507 + GA-rich Low_complexity Low_complexity 1 130 0 1935 209 30 26 chr3 7429655 7430085 -210607073 + MLT1C LTR MaLR 36 467 0 1125 185 0 4 chr3 7430106 7430333 -210606825 - AluJo SINE Alu 0 312 87 2148 109 0 0 chr3 7430348 7430641 -210606517 - AluSg SINE Alu -15 295 3 411 246 0 51 chr3 7430644 7430762 -210606396 - FLAM_A SINE Alu -4 138 27 9613 40 27 94 chr3 7430900 7432423 -210604735 + SVA Other Other 1 1625 -440 1955 147 0 3 chr3 7432423 7432735 -210604423 + AluSq SINE Alu 1 311 -2 2186 116 0 0 chr3 7432737 7433048 -210604110 + AluSx SINE Alu 1 311 -1 9613 40 27 94 chr3 7433048 7433065 -210604093 + SVA Other Other 1626 2065 0 847 81 16 0 chr3 7433068 7433191 -210603967 + FLAM_C SINE Alu 1 125 -18 1544 199 28 0 chr3 7433202 7433484 -210603674 - MER63B DNA MER1_type -146 290 1 22 0 0 0 chr3 7433515 7433537 -210603621 + AT_rich Low_complexity Low_complexity 1 22 0 1797 162 0 9 chr3 7433662 7433977 -210603181 - AluSx SINE Alu 0 312 1 718 233 43 0 chr3 7433982 7434145 -210603013 + MIR SINE MIR 61 230 -32 533 215 15 8 chr3 7434147 7434277 -210602881 + AluSq/x SINE Alu 3 133 -180 274 125 31 42 chr3 7434354 7434450 -210602708 + A-rich Low_complexity Low_complexity 2 96 0 297 244 29 52 chr3 7434450 7434622 -210602536 + GA-rich Low_complexity Low_complexity 5 172 0 278 149 21 0 chr3 7435023 7435070 -210602088 - Charlie8 DNA MER1_type -1006 1411 1364 2028 123 3 0 chr3 7435142 7435442 -210601716 - AluSx SINE Alu -11 301 1 476 257 141 84 chr3 7435689 7435883 -210601275 + L1ME4a LINE L1 5631 5847 -274 1796 135 7 0 chr3 7435883 7436164 -210600994 - AluSg SINE Alu -15 295 13 476 257 141 84 chr3 7436164 7436253 -210600905 + L1ME4a LINE L1 5847 5930 -191 279 180 16 141 chr3 7436310 7436438 -210600720 - MLT1H LTR MaLR 0 549 438 1481 196 70 40 chr3 7436865 7437141 -210600017 + L1MC/D LINE L1 4789 5082 -1064 2158 110 0 10 chr3 7437141 7437450 -210599708 - AluSx SINE Alu -1 311 6 1481 196 70 40 chr3 7437450 7437575 -210599583 + L1MC/D LINE L1 5082 5202 -944 959 209 60 18 chr3 7437575 7437857 -210599301 + AluSx SINE Alu 1 294 -8 415 236 183 21 chr3 7438212 7438403 -210598755 + L1MC/D LINE L1 5296 5517 -2291 1629 75 0 0 chr3 7438445 7438658 -210598500 - AluSg SINE Alu -97 213 1 249 109 455 0 chr3 7439109 7439164 -210597994 - MADE1 DNA Mariner 0 80 1 1745 149 35 0 chr3 7439553 7439669 -210597489 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 7439669 7439715 -210597443 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1745 149 35 0 chr3 7439715 7439886 -210597272 + AluSx SINE Alu 112 298 -14 889 236 106 24 chr3 7440215 7440507 -210596651 - L2 LINE L2 -429 2885 2570 1703 161 7 20 chr3 7440536 7440834 -210596324 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 7440837 7440860 -210596298 + (TA)n Simple_repeat Simple_repeat 2 24 0 235 328 12 58 chr3 7441977 7442080 -210595078 - MIR SINE MIR -63 145 68 638 230 15 0 chr3 7443505 7443640 -210593518 + MER3 DNA MER1_type 2 138 -71 2030 129 0 19 chr3 7443646 7443957 -210593201 + AluSg SINE Alu 1 305 -5 210 358 0 0 chr3 7444226 7444293 -210592865 - L2 LINE L2 -1 3271 3205 328 327 58 13 chr3 7444430 7444586 -210592572 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 7444627 7444660 -210592498 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 502 188 240 19 chr3 7444838 7444992 -210592166 - MER53 DNA DNA 0 189 2 2222 98 7 0 chr3 7445252 7445559 -210591599 - AluSp SINE Alu -4 309 1 335 212 161 25 chr3 7445829 7445947 -210591211 - L2 LINE L2 -10 3303 3170 1824 122 15 0 chr3 7446194 7446465 -210590693 - AluSx SINE Alu -24 288 14 860 153 127 0 chr3 7446515 7446665 -210590493 + MER6B DNA MER2_type 37 205 -5 1821 192 68 21 chr3 7446948 7447376 -210589782 - MLT1C LTR MaLR -2 465 18 2039 125 0 3 chr3 7447605 7447909 -210589249 - AluSx SINE Alu -9 303 1 1071 149 123 0 chr3 7448200 7448395 -210588763 + MER20 DNA MER1_type 1 219 0 2121 103 7 0 chr3 7448835 7449135 -210588023 - AluSp SINE Alu -11 302 1 281 87 0 43 chr3 7449747 7449793 -210587365 - L2 LINE L2 -75 3238 3195 419 175 0 25 chr3 7450132 7450212 -210586946 - MER65A LTR ERV1 -333 112 35 506 81 0 0 chr3 7450213 7450287 -210586871 + Alu SINE Alu 229 302 -10 2036 99 3 11 chr3 7450296 7450579 -210586579 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7450582 7450633 -210586525 + (CATA)n Simple_repeat Simple_repeat 2 52 0 934 238 75 77 chr3 7450751 7451204 -210585954 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7451233 7451261 -210585897 + L2 LINE L2 3166 3192 -121 318 26 0 0 chr3 7451261 7451300 -210585858 + (TC)n Simple_repeat Simple_repeat 2 40 0 278 301 68 62 chr3 7451300 7451417 -210585741 + L2 LINE L2 3192 3312 -1 291 263 25 12 chr3 7452212 7452292 -210584866 - MLT1K LTR MaLR -31 557 477 794 254 11 0 chr3 7452665 7452842 -210584316 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7453102 7453401 -210583757 - AluSx SINE Alu -13 299 1 1198 96 0 0 chr3 7453427 7453593 -210583565 - AluYa5 SINE Alu -13 298 133 2563 40 0 0 chr3 7453593 7453895 -210583263 - AluYb8 SINE Alu -16 302 1 293 269 172 27 chr3 7453903 7454089 -210583069 + L1ME4a LINE L1 5682 5894 -227 1000 251 127 39 chr3 7454122 7454289 -210582869 - MLT1F1 LTR MaLR -1 566 415 1573 122 80 0 chr3 7454289 7454526 -210582632 + AluSx SINE Alu 44 299 -13 1000 251 127 39 chr3 7454526 7454803 -210582355 - MLT1F1 LTR MaLR -152 415 104 266 333 11 0 chr3 7454925 7455015 -210582143 - MLT1F1 LTR MaLR -498 95 5 234 220 20 140 chr3 7455402 7455502 -210581656 + LTR16A1 LTR ERVL 20 107 -350 385 229 99 15 chr3 7455617 7455748 -210581410 + LTR16A1 LTR ERVL 313 454 -3 2077 113 0 7 chr3 7456133 7456433 -210580725 + AluSq SINE Alu 1 298 -15 185 0 0 39 chr3 7456534 7456560 -210580598 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 198 192 154 19 chr3 7456647 7456699 -210580459 + L2 LINE L2 3252 3310 -3 2147 97 0 3 chr3 7456719 7457008 -210580150 + AluSx SINE Alu 1 288 -24 315 207 0 73 chr3 7458138 7458220 -210578938 + AluSg/x SINE Alu 171 246 -56 1067 201 0 4 chr3 7458225 7458454 -210578704 + AluSg/x SINE Alu 85 312 0 231 307 86 57 chr3 7458470 7458610 -210578548 - L2 LINE L2 -2 3311 3168 254 324 102 25 chr3 7458646 7458877 -210578281 - L2 LINE L2 -276 3037 2791 373 217 43 7 chr3 7458884 7459022 -210578136 + (TA)n Simple_repeat Simple_repeat 1 143 0 29 0 0 0 chr3 7459058 7459087 -210578071 + AT_rich Low_complexity Low_complexity 1 29 0 702 75 0 0 chr3 7459116 7459210 -210577948 - L1PA5 LINE L1 0 6154 6061 624 219 14 0 chr3 7459236 7459382 -210577776 - L1MA10 LINE L1 -13 6321 6174 1887 137 14 0 chr3 7459383 7459675 -210577483 + AluJo SINE Alu 1 296 -16 503 259 45 58 chr3 7459675 7459918 -210577240 - L1MD2 LINE L1 -139 6027 5788 282 297 14 109 chr3 7459961 7460099 -210577059 + MIR SINE MIR 32 156 -106 399 293 73 44 chr3 7460770 7460975 -210576183 + MIR SINE MIR 31 241 -21 242 116 23 0 chr3 7461034 7461077 -210576081 + (TG)n Simple_repeat Simple_repeat 2 45 0 891 266 129 6 chr3 7461177 7461511 -210575647 + L3 LINE CR1 1161 1535 -42 288 0 0 0 chr3 7461664 7461696 -210575462 + (T)n Simple_repeat Simple_repeat 1 32 0 359 203 100 144 chr3 7461779 7462050 -210575108 - MLT1K LTR MaLR 0 588 330 1306 194 0 68 chr3 7462179 7462503 -210574655 + AluJo SINE Alu 1 302 -10 1958 126 0 3 chr3 7462505 7462790 -210574368 + AluSx SINE Alu 1 284 -28 222 37 0 0 chr3 7462790 7462817 -210574341 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 592 326 84 45 chr3 7462934 7463453 -210573705 + L2 LINE L2 2684 3260 -12 827 213 38 85 chr3 7464161 7464287 -210572871 + MIR SINE MIR 29 140 -122 1901 117 40 0 chr3 7464287 7464585 -210572573 - AluSx SINE Alu -2 310 1 827 213 38 85 chr3 7464585 7464693 -210572465 + MIR SINE MIR 140 252 -10 274 171 157 14 chr3 7464798 7464868 -210572290 - L2 LINE L2 -5 3308 3229 1947 113 15 95 chr3 7465019 7465365 -210571793 - L1PBa LINE L1 -4936 1927 1617 2048 115 0 29 chr3 7465365 7465678 -210571480 - AluSx SINE Alu -8 304 1 1947 113 15 95 chr3 7465678 7465740 -210571418 - L1PBa LINE L1 -5246 1617 1552 580 343 18 14 chr3 7465958 7466177 -210570981 + MIR SINE MIR 42 261 -1 251 295 67 0 chr3 7466235 7466340 -210570818 + L1ME4a LINE L1 6010 6121 0 2451 52 0 3 chr3 7466516 7466826 -210570332 + AluY SINE Alu 1 309 -2 1130 126 32 24 chr3 7466826 7467166 -210569992 + MER49 LTR ERV1 160 534 -389 2218 106 3 0 chr3 7467167 7467478 -210569680 - AluSx SINE Alu 0 312 1 1005 86 0 7 chr3 7467480 7467619 -210569539 - AluYb8 SINE Alu -180 138 1 1274 228 59 62 chr3 7467621 7467715 -210569443 + MER49 LTR ERV1 521 614 -309 1993 139 3 3 chr3 7467715 7468025 -210569133 - AluSx SINE Alu -2 310 1 1274 228 59 62 chr3 7468025 7468334 -210568824 + MER49 LTR ERV1 614 923 0 268 152 30 0 chr3 7468443 7468509 -210568649 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 2275 121 0 0 chr3 7519148 7519446 -210517712 + AluSg SINE Alu 1 298 -12 607 301 98 25 chr3 7519454 7519977 -210517181 - L1M4 LINE L1 -813 5333 4775 228 300 90 0 chr3 7520983 7521083 -210516075 + MIR SINE MIR 120 228 -34 450 219 15 88 chr3 7521265 7521402 -210515756 - MIR SINE MIR -101 161 35 1594 112 5 5 chr3 7521415 7521639 -210515519 - AluSq SINE Alu -22 291 68 293 303 13 0 chr3 7521800 7521876 -210515282 + L2 LINE L2 3192 3268 -4 239 319 96 0 chr3 7521977 7522071 -210515087 - L3 LINE CR1 -393 1184 1082 7686 102 26 4 chr3 7523500 7524647 -210512511 - L1P LINE L1 -3314 2832 1661 231 227 252 34 chr3 7525057 7525176 -210511982 + MER5A DNA MER1_type 30 185 -4 578 223 141 0 chr3 7525192 7525352 -210511806 - MER5A DNA MER1_type 0 189 4 238 207 132 0 chr3 7525602 7525723 -210511435 + AluSg SINE Alu 2 138 -162 520 201 60 148 chr3 7526484 7526802 -210510356 + MER102b DNA MER1_type 52 341 0 827 187 66 28 chr3 7528069 7528251 -210508907 - MER5A DNA MER1_type 0 189 1 936 157 40 0 chr3 7529127 7529304 -210507854 - L1MB7 LINE L1 -183 6001 5814 182 283 130 22 chr3 7530740 7530832 -210506326 - L2 LINE L2 -21 3292 3191 2883 188 48 24 chr3 7532370 7533254 -210503904 + L1MA9 LINE L1 4848 5901 -411 289 247 81 86 chr3 7534768 7534954 -210502204 + L1ME LINE L1 5634 5818 -303 382 288 18 9 chr3 7535201 7535312 -210501846 - MIR SINE MIR -90 172 61 190 348 158 19 chr3 7535352 7535510 -210501648 + MIR3 SINE MIR 16 195 -13 221 398 0 0 chr3 7536208 7536296 -210500862 - MIR SINE MIR -55 153 66 217 334 88 0 chr3 7536971 7537107 -210500051 - MIR SINE MIR -63 145 45 381 253 22 0 chr3 7537170 7537261 -210499897 - MER5A DNA MER1_type -88 101 9 457 308 14 20 chr3 7538042 7538188 -210498970 + MIR3 SINE MIR 40 184 -24 342 270 41 0 chr3 7539045 7539171 -210497987 + MLT1J2 LTR MaLR 65 233 -278 320 275 102 23 chr3 7539849 7540055 -210497103 + MIR SINE MIR 9 225 -37 260 253 48 48 chr3 7540124 7540207 -210496951 + L2 LINE L2 3231 3313 0 843 271 76 15 chr3 7540298 7540724 -210496434 - MARNA DNA Mariner -33 553 70 328 264 174 0 chr3 7541262 7541383 -210495775 - MIR SINE MIR -62 200 59 640 345 47 14 chr3 7543628 7543924 -210493234 + L2 LINE L2 2654 2959 -355 2073 139 34 28 chr3 7544619 7544971 -210492187 - MSTB1 LTR MaLR 0 432 79 356 289 91 54 chr3 7545277 7545519 -210491639 + L1ME4a LINE L1 5778 6028 -93 1500 181 0 40 chr3 7545585 7545862 -210491296 - AluJo SINE Alu -17 295 30 1197 94 0 50 chr3 7546824 7547004 -210490154 + AluSq SINE Alu 143 313 0 494 296 78 4 chr3 7547154 7547602 -210489556 - L1ME4a LINE L1 -32 6089 5572 190 277 0 0 chr3 7547680 7547727 -210489431 - L2 LINE L2 0 3313 3267 586 237 194 0 chr3 7548095 7548281 -210488877 + MIR SINE MIR 11 232 -30 470 278 17 56 chr3 7548918 7549098 -210488060 - MER5B DNA MER1_type -2 176 4 350 258 0 22 chr3 7549098 7549185 -210487973 - MER5B DNA MER1_type -93 85 1 827 187 66 28 chr3 7549835 7550017 -210487141 - MER5A DNA MER1_type 0 189 1 1082 231 50 30 chr3 7550850 7551148 -210486010 + LTR40b LTR ERVL 1 304 -158 2072 123 20 0 chr3 7551161 7551461 -210485697 + AluSx SINE Alu 1 306 -6 371 159 16 0 chr3 7551464 7551527 -210485631 + LTR40a LTR ERVL 451 514 -5 247 281 148 39 chr3 7551669 7551797 -210485361 + L2 LINE L2 3171 3312 -1 1048 269 114 43 chr3 7551824 7552244 -210484914 - LTR16A LTR ERVL 0 450 1 2167 189 3 6 chr3 7552295 7552661 -210484497 - MLT1A1 LTR MaLR 0 365 1 1991 139 0 0 chr3 7552745 7553026 -210484132 - AluSx SINE Alu -19 293 13 4100 155 22 24 chr3 7553166 7553889 -210483269 + L1MA10 LINE L1 5602 6323 -11 378 351 73 71 chr3 7553966 7554352 -210482806 + L2 LINE L2 2838 3227 -45 1527 226 57 28 chr3 7554352 7554776 -210482382 - MER63B DNA MER1_type 0 436 1 378 351 73 71 chr3 7554776 7554814 -210482344 + L2 LINE L2 3227 3263 -9 2176 126 10 0 chr3 7555714 7556023 -210481135 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 7556173 7556194 -210480964 + AT_rich Low_complexity Low_complexity 1 21 0 218 222 111 0 chr3 7556440 7556485 -210480673 - L2 LINE L2 -3 3269 3220 584 290 109 62 chr3 7556715 7557118 -210480040 - MLT1K LTR MaLR -126 462 41 185 344 16 0 chr3 7557134 7557198 -210479960 - L2 LINE L2 -237 3035 2971 475 280 126 6 chr3 7559456 7559631 -210477527 + L2 LINE L2 3112 3307 -6 241 347 74 34 chr3 7559657 7559833 -210477325 - MIR SINE MIR -20 242 60 455 337 63 0 chr3 7560036 7560211 -210476947 - MIR SINE MIR -41 221 36 467 360 35 19 chr3 7560289 7560550 -210476608 + L3 LINE CR1 967 1231 -346 683 298 37 16 chr3 7560645 7560890 -210476268 + MIR SINE MIR 13 262 0 190 292 188 21 chr3 7561090 7561186 -210475972 - MIR SINE MIR -67 141 30 990 316 104 23 chr3 7561373 7562096 -210475062 + L2 LINE L2 2499 3308 -5 2380 88 0 28 chr3 7562899 7563217 -210473941 + AluY SINE Alu 1 309 -2 22 56 0 0 chr3 7563482 7563518 -210473640 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7563528 7563551 -210473607 + AT_rich Low_complexity Low_complexity 1 23 0 270 231 0 0 chr3 7564369 7564434 -210472724 + (TA)n Simple_repeat Simple_repeat 1 65 0 190 355 0 0 chr3 7564434 7564496 -210472662 + L2 LINE L2 2920 2981 -291 329 223 117 21 chr3 7564543 7564637 -210472521 + MER5A DNA MER1_type 31 133 -56 258 213 0 0 chr3 7564990 7565037 -210472121 + L2 LINE L2 3257 3303 -10 2177 146 8 11 chr3 7565141 7565503 -210471655 + MLT1A1 LTR MaLR 5 365 0 398 286 0 0 chr3 7565567 7565665 -210471493 + L2 LINE L2 3173 3270 -2 323 283 43 11 chr3 7566211 7566303 -210470855 + MIR SINE MIR 118 212 -50 24 0 0 0 chr3 7567838 7567862 -210469296 + AT_rich Low_complexity Low_complexity 1 24 0 266 244 26 0 chr3 7567992 7568070 -210469088 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 777 211 93 45 chr3 7568573 7568819 -210468339 + MIR SINE MIR 5 262 0 823 195 23 45 chr3 7570209 7570430 -210466728 + MER20 DNA MER1_type 2 217 -2 249 258 305 0 chr3 7571243 7571371 -210465787 - MIR SINE MIR -45 217 51 2582 238 30 20 chr3 7571567 7572211 -210464947 + MER82 DNA MER2_type 1 650 -3 687 178 103 23 chr3 7572614 7572788 -210464370 + MER5A DNA MER1_type 2 189 0 3882 168 14 3 chr3 7573320 7574016 -210463142 + MER50 LTR ERV1 7 710 -24 210 294 147 29 chr3 7574024 7574126 -210463032 - L2 LINE L2 -40 3273 3160 283 319 120 15 chr3 7575508 7575756 -210461402 - L3 LINE CR1 -15 1562 1238 2059 131 0 7 chr3 7576116 7576413 -210460745 - AluSx SINE Alu -17 295 1 991 204 125 14 chr3 7576769 7577048 -210460110 - LTR2 LTR ERV1 0 449 140 244 298 145 8 chr3 7577079 7577210 -210459948 - LTR2 LTR ERV1 -298 151 3 387 309 19 47 chr3 7577249 7577505 -210459653 - L2 LINE L2 -1037 2277 2029 280 258 34 34 chr3 7577596 7577685 -210459473 - L2 LINE L2 -1359 1955 1867 304 330 73 31 chr3 7578162 7578200 -210458958 + MIR SINE MIR 48 83 -179 2178 154 43 25 chr3 7578200 7578642 -210458516 - LTR7 LTR ERV1 0 450 1 304 330 73 31 chr3 7578642 7578794 -210458364 + MIR SINE MIR 83 246 -16 4952 214 18 33 chr3 7579518 7581545 -210455613 + L1PA8A LINE L1 3 2163 -4298 940 117 0 6 chr3 7581550 7581713 -210455445 + L1PA8A LINE L1 3634 3795 -2666 12574 110 5 7 chr3 7581760 7582559 -210454599 + L1PA8A LINE L1 3756 4555 -1891 2034 143 26 10 chr3 7582559 7582866 -210454292 + AluSx SINE Alu 1 312 0 12574 110 5 7 chr3 7582866 7584747 -210452411 + L1PA8A LINE L1 4555 6445 -1 1415 183 54 0 chr3 7584761 7585056 -210452102 + L1M2 LINE L1 5476 5786 -526 8343 54 7 0 chr3 7585241 7587073 -210450085 - L1PA5 LINE L1 -3 6151 4304 5958 90 2 15 chr3 7587338 7588224 -210448934 + L1PA10 LINE L1 5291 6165 -3 1494 174 14 88 chr3 7588308 7588732 -210448426 + MLT2D LTR ERVL 5 377 -20 256 259 0 0 chr3 7588739 7588797 -210448361 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 258 100 50 0 chr3 7588801 7588841 -210448317 + MLT2D LTR ERVL 367 408 -6 649 278 40 48 chr3 7588846 7589094 -210448064 - MIR SINE MIR -10 252 7 290 146 0 18 chr3 7589670 7589725 -210447433 - L1ME LINE L1 -476 5645 5592 381 238 42 35 chr3 7589842 7590101 -210447057 + MLT1I LTR MaLR 95 399 -10 956 287 89 0 chr3 7590336 7590751 -210446407 - L1MC4a LINE L1 -1862 5946 5495 508 272 101 68 chr3 7590768 7591245 -210445913 - L1MC4a LINE L1 -1684 4462 3947 8036 214 17 7 chr3 7591626 7593578 -210443580 - L1P LINE L1 -1361 4785 2814 21264 32 20 1 chr3 7593589 7596968 -210440190 - L1PA4 LINE L1 -6 6149 2719 2520 38 0 0 chr3 7596968 7597288 -210439870 - L1P LINE L1 -1003 5143 4824 7811 102 29 6 chr3 7597292 7599275 -210437883 - L1PA7 LINE L1 -3 6466 4451 10397 98 7 0 chr3 7599278 7600773 -210436385 - L1PA7 LINE L1 -4812 1649 145 3342 203 20 12 chr3 7600771 7601519 -210435639 - L1PA13 LINE L1 -4803 1984 1231 * 227 321 9 0 chr3 7601557 7601666 -210435492 - L1PA12 LINE L1 -5279 2302 2193 227 335 29 61 chr3 7602512 7602757 -210434401 - L1PA12 LINE L1 -7202 379 143 724 286 152 47 chr3 7602788 7603474 -210433684 - L1M4 LINE L1 -3113 3033 2276 2329 104 3 0 chr3 7603475 7603773 -210433385 - AluSx SINE Alu -13 299 1 214 264 28 14 chr3 7603918 7603990 -210433168 + (CTA)n Simple_repeat Simple_repeat 2 74 0 341 366 42 0 chr3 7605482 7605624 -210431534 + MIR SINE MIR 86 233 -29 512 260 0 0 chr3 7605639 7605762 -210431396 + Tigger3(Golem) DNA MER2_type 3 125 -2904 288 103 39 39 chr3 7605759 7605837 -210431321 + Tigger3(Golem) DNA MER2_type 2483 2560 -469 * 711 176 11 102 chr3 7605844 7606031 -210431127 + FRAM SINE Alu 2 171 -5 2784 131 7 13 chr3 7606031 7606482 -210430676 + Tigger3(Golem) DNA MER2_type 2581 3028 -1 27 49 0 0 chr3 7606602 7606643 -210430515 + AT_rich Low_complexity Low_complexity 1 41 0 540 45 0 0 chr3 7607387 7607454 -210429704 + (TA)n Simple_repeat Simple_repeat 2 68 0 696 184 0 17 chr3 7607502 7607727 -210429431 - AluJb SINE Alu -1 311 1 2089 147 81 18 chr3 7607880 7608275 -210428883 - MSTA LTR MaLR -4 424 5 231 294 172 12 chr3 7608388 7608551 -210428607 - MIR SINE MIR -11 251 63 2192 126 3 0 chr3 7608634 7608935 -210428223 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr3 7609195 7609223 -210427935 + AT_rich Low_complexity Low_complexity 1 28 0 568 148 56 0 chr3 7609359 7609467 -210427691 - L1MA9 LINE L1 -4 6308 6195 2050 178 76 4 chr3 7609469 7609941 -210427217 - L1MA8 LINE L1 -5 6286 5781 348 262 0 0 chr3 7609941 7610044 -210427114 + (TA)n Simple_repeat Simple_repeat 1 103 0 226 211 0 0 chr3 7610045 7610097 -210427061 - L1MC4 LINE L1 -1339 6703 6652 286 342 0 0 chr3 7610097 7610176 -210426982 + (CATA)n Simple_repeat Simple_repeat 2 80 0 359 315 0 11 chr3 7610181 7610362 -210426796 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 591 293 0 0 chr3 7610378 7610706 -210426452 + (TA)n Simple_repeat Simple_repeat 1 328 0 183 366 0 0 chr3 7610732 7610907 -210426251 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 * 279 161 0 0 chr3 7610880 7610936 -210426222 + (CA)n Simple_repeat Simple_repeat 2 57 0 556 159 90 141 chr3 7610938 7611194 -210425964 - L1MA8 LINE L1 -513 5778 5543 569 276 75 10 chr3 7611304 7611711 -210425447 - L1 LINE L1 -2597 3549 3112 1369 176 82 34 chr3 7611886 7612331 -210424827 - LTR10A LTR ERV1 -79 530 1 189 303 13 26 chr3 7612471 7612547 -210424611 + MIR SINE MIR 188 262 0 4786 136 2 67 chr3 7613022 7613853 -210423305 - THE1C-int LTR MaLR -726 854 86 5644 75 13 1 chr3 7613853 7614610 -210422548 - MER4E LTR ERV1 0 766 1 4786 136 2 67 chr3 7614610 7614689 -210422469 - THE1C-int LTR MaLR -1494 86 3 1852 152 76 22 chr3 7614691 7615047 -210422111 - THE1C LTR MaLR 0 375 1 395 247 7 41 chr3 7615059 7615205 -210421953 + MER104 DNA Tc2 39 179 -1 297 309 166 7 chr3 7615366 7615505 -210421653 + MER91A DNA MER1_type 1 161 -35 432 337 96 33 chr3 7615764 7616253 -210420905 + MLT1K LTR MaLR 16 535 -53 264 314 0 10 chr3 7616377 7616479 -210420679 + CT-rich Low_complexity Low_complexity 2 102 0 208 280 178 37 chr3 7616887 7616994 -210420164 + L2 LINE L2 3192 3313 0 2534 140 24 2 chr3 7617339 7617752 -210419406 + MSTB LTR MaLR 3 424 -2 8137 185 44 9 chr3 7617754 7619349 -210417809 + MSTB-int LTR MaLR 1 1651 0 1971 170 78 18 chr3 7619351 7619751 -210417407 + MSTB LTR MaLR 3 426 0 3076 90 28 0 chr3 7619797 7620230 -210416928 - L1PA11 LINE L1 0 6174 5730 259 266 67 8 chr3 7621889 7621987 -210415171 + MIR SINE MIR 74 175 -68 1995 154 0 0 chr3 7622488 7622780 -210414378 + AluSx SINE Alu 1 292 -20 3434 48 0 0 chr3 7623114 7623529 -210413629 + L1PA7 LINE L1 5733 6147 -7 2099 119 30 0 chr3 7625325 7625628 -210411530 + AluSx SINE Alu 1 312 0 501 288 85 29 chr3 7625862 7626367 -210410791 + L1MC4a LINE L1 3877 4421 -1725 477 317 61 66 chr3 7626588 7626745 -210410413 + L1MC4a LINE L1 4733 4889 -1257 2270 99 3 0 chr3 7626745 7627039 -210410119 - AluSp SINE Alu -18 295 1 477 317 61 66 chr3 7627039 7627275 -210409883 + L1MC4a LINE L1 4889 5124 -1022 1067 273 90 56 chr3 7627422 7628081 -210409077 + L1MC4a LINE L1 5265 5819 -302 210 315 72 9 chr3 7629024 7629135 -210408023 - MIR SINE MIR 0 262 145 324 0 0 0 chr3 7629538 7629574 -210407584 + (A)n Simple_repeat Simple_repeat 1 36 0 10191 225 59 66 chr3 7629766 7634104 -210403054 - L1M2 LINE L1 -602 6710 2343 2343 164 50 7 chr3 7634104 7634542 -210402616 - MSTB2 LTR MaLR 0 457 1 960 203 31 22 chr3 7634542 7634769 -210402389 - MER46A DNA MER2_type -7 229 1 10191 225 59 66 chr3 7634769 7636077 -210401081 - L1M2 LINE L1 -4967 2345 1193 266 269 92 43 chr3 7636625 7636766 -210400392 - L2 LINE L2 -1 3312 3165 257 233 79 55 chr3 7637216 7637418 -210399740 - LTR33 LTR ERVL -16 505 299 292 303 42 7 chr3 7637529 7637671 -210399487 - LTR33 LTR ERVL -366 155 9 593 129 0 0 chr3 7637846 7637931 -210399227 - FLAM SINE Alu -19 124 40 259 225 0 38 chr3 7638037 7638117 -210399041 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 801 258 45 1 chr3 7640454 7640661 -210396497 - MIR SINE MIR -47 215 3 848 181 117 0 chr3 7641137 7641325 -210395833 - MER20 DNA MER1_type -2 217 8 264 200 0 0 chr3 7641648 7641733 -210395425 + CT-rich Low_complexity Low_complexity 1 85 0 3902 118 3 0 chr3 7642481 7643068 -210394090 + L1PA13 LINE L1 5562 6150 -13 1320 170 64 70 chr3 7643214 7643573 -210393585 + MLT1A1 LTR MaLR 1 357 -8 484 321 51 10 chr3 7643590 7643883 -210393275 + MLT1K LTR MaLR 262 566 -22 493 262 41 21 chr3 7644017 7644162 -210392996 + MIR SINE MIR 41 188 -74 340 293 118 7 chr3 7644343 7644514 -210392644 - MIR SINE MIR -62 146 1 187 246 35 35 chr3 7646479 7646536 -210390622 + MIR SINE MIR 96 152 -56 364 291 87 76 chr3 7646825 7647182 -210389976 - MLT1K LTR MaLR -87 501 141 192 40 0 0 chr3 7648412 7648437 -210388721 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 775 155 9 0 chr3 7648438 7648554 -210388604 - AluJb SINE Alu -193 119 3 782 226 59 44 chr3 7648668 7648872 -210388286 + MER63A DNA MER1_type 4 210 0 896 233 77 85 chr3 7649042 7649604 -210387554 - L1ME3A LINE L1 -5 6165 5609 297 244 111 84 chr3 7650203 7650428 -210386730 - L2 LINE L2 -218 3054 2824 934 187 16 5 chr3 7650906 7651093 -210386065 - MER5A DNA MER1_type 0 189 1 838 255 25 103 chr3 7651360 7651756 -210385402 + MLT1A1 LTR MaLR 1 365 0 565 231 28 66 chr3 7652291 7652331 -210384827 + MER5B DNA MER1_type 1 41 -137 2205 133 0 0 chr3 7652331 7652640 -210384518 + AluSg SINE Alu 1 309 -1 565 231 28 66 chr3 7652640 7652781 -210384377 + MER5B DNA MER1_type 41 175 -3 984 180 16 0 chr3 7652790 7652973 -210384185 + MER5A DNA MER1_type 1 186 -3 374 357 16 11 chr3 7652987 7653172 -210383986 - MER5A DNA MER1_type -3 186 1 257 338 101 36 chr3 7653208 7653347 -210383811 - MER5B DNA MER1_type -16 162 15 477 273 45 45 chr3 7654003 7654157 -210383001 - MIR3 SINE MIR -39 169 16 2113 236 50 12 chr3 7655094 7655612 -210381546 + MLT1F LTR MaLR 5 542 0 327 289 0 0 chr3 7655622 7655712 -210381446 + L2 LINE L2 3224 3313 0 740 267 61 17 chr3 7656003 7656445 -210380713 - LTR33 LTR ERVL -25 496 3 414 138 0 0 chr3 7656727 7656792 -210380366 + AluSc SINE Alu 236 300 -9 1293 165 117 26 chr3 7656796 7657105 -210380053 - THE1C LTR MaLR -38 337 1 538 320 46 25 chr3 7657264 7657461 -210379697 - L3 LINE CR1 -8 1569 1369 968 226 22 2 chr3 7657485 7657758 -210379400 - L1ME1 LINE L1 -177 5989 5712 271 246 67 15 chr3 7658197 7658331 -210378827 - L1MEd LINE L1 -5973 146 6 181 284 40 27 chr3 7659594 7659668 -210377490 - MIR3 SINE MIR -47 161 87 222 255 0 0 chr3 7659812 7659863 -210377295 - MIR SINE MIR -108 154 104 495 264 9 88 chr3 7659968 7660184 -210376974 - MIR SINE MIR -44 218 20 2432 198 49 12 chr3 7660197 7660788 -210376370 - MER90 LTR ERV1 -1 613 1 249 311 106 12 chr3 7660813 7660974 -210376184 - L2 LINE L2 -618 2696 2521 379 283 122 24 chr3 7662823 7663028 -210374130 - LTR16A LTR ERVL -6 444 220 848 237 45 0 chr3 7663484 7663682 -210373476 - MIR SINE MIR -40 222 16 685 278 34 1 chr3 7663710 7663938 -210373220 - MIR SINE MIR -13 249 16 854 136 220 5 chr3 7665439 7665630 -210371528 + MER46A DNA MER2_type 1 232 -4 1911 178 3 45 chr3 7665646 7665785 -210371373 + MLT1A1 LTR MaLR 3 146 -219 2149 26 56 4 chr3 7665785 7666089 -210371069 - AluY SINE Alu 0 318 1 1911 178 3 45 chr3 7666089 7666325 -210370833 + MLT1A1 LTR MaLR 146 363 -2 1826 177 20 3 chr3 7666807 7667112 -210370046 - AluSx SINE Alu -2 310 1 346 157 14 0 chr3 7667334 7667404 -210369754 + MLT2B3 LTR ERVL 1 71 -483 1587 189 129 55 chr3 7667497 7667948 -210369210 + MLT2B3 LTR ERVL 71 554 0 521 296 119 51 chr3 7668205 7668753 -210368405 - MLT1K LTR MaLR 0 588 4 720 284 92 42 chr3 7668967 7669424 -210367734 + LTR33 LTR ERVL 34 513 -8 246 295 52 75 chr3 7670250 7670423 -210366735 + MIR SINE MIR 14 182 -80 1162 204 8 17 chr3 7670538 7670773 -210366385 + MER8 DNA MER2_type 7 239 0 341 202 18 53 chr3 7671176 7671290 -210365868 - MER103 DNA DNA -49 117 8 484 243 110 12 chr3 7671656 7671829 -210365329 - MIR SINE MIR -1 261 72 993 258 57 6 chr3 7671841 7672155 -210365003 + MER58B DNA MER1_type 12 341 0 204 322 56 94 chr3 7673267 7673609 -210363549 - L2 LINE L2 -4 3268 2940 189 258 30 45 chr3 7673915 7673981 -210363177 + MIR SINE MIR 87 151 -57 10906 41 7 0 chr3 7673982 7676086 -210361072 + L1PA5 LINE L1 4027 6147 -7 512 208 16 0 chr3 7676088 7676213 -210360945 + (TATG)n Simple_repeat Simple_repeat 2 128 0 206 245 19 0 chr3 7676329 7676382 -210360776 + L2 LINE L2 3217 3270 -2 539 262 104 0 chr3 7677520 7677684 -210359474 + MIR SINE MIR 44 224 -38 616 241 6 6 chr3 7678876 7679034 -210358124 + MER20 DNA MER1_type 33 190 -29 40651 51 4 3 chr3 7679086 7685232 -210351926 - L1PA5 LINE L1 0 6154 7 756 98 91 0 chr3 7685232 7685364 -210351794 - L1P5 LINE L1 -543 5608 5465 873 133 0 67 chr3 7685364 7685544 -210351614 - MLT1B LTR MaLR -222 168 1 187 342 45 0 chr3 7685798 7685909 -210351249 + MIR SINE MIR 92 207 -55 2321 112 3 0 chr3 7686496 7686801 -210350357 + AluSq SINE Alu 1 306 -7 383 244 133 22 chr3 7687758 7687842 -210349316 - MIR SINE MIR -15 247 149 513 274 71 18 chr3 7687842 7688010 -210349148 - MER5B DNA MER1_type -1 177 1 15142 215 24 6 chr3 7688993 7694346 -210342812 + L1PA15 LINE L1 1357 6816 0 338 159 23 102 chr3 7694692 7694780 -210342378 - MIR3 SINE MIR -14 194 114 301 294 12 0 chr3 7695315 7695400 -210341758 + MIR SINE MIR 68 153 -109 527 374 29 3 chr3 7695749 7696089 -210341069 + L1MEc LINE L1 35 383 -6013 638 259 77 66 chr3 7696121 7696820 -210340338 + L1MEc LINE L1 942 1648 -4748 * 2659 247 84 15 chr3 7696810 7697318 -210339840 + L1MEc LINE L1 2244 2716 -3499 2470 99 42 11 chr3 7697318 7697671 -210339487 - THE1B LTR MaLR 0 364 1 2659 247 84 15 chr3 7697671 7698402 -210338756 + L1MEc LINE L1 2716 3568 -2647 590 125 38 109 chr3 7698412 7698547 -210338611 + L1MD3 LINE L1 7729 7849 -146 2421 97 0 0 chr3 7698547 7698855 -210338303 - AluY SINE Alu -3 308 1 590 125 38 109 chr3 7698855 7698903 -210338255 + L1MD3 LINE L1 7849 7899 -96 754 278 28 5 chr3 7698903 7699115 -210338043 + MER20 DNA MER1_type 1 217 -2 321 125 16 0 chr3 7699152 7699216 -210337942 + L1MD3 LINE L1 7931 7995 0 * 423 268 63 0 chr3 7699210 7699352 -210337806 + L1MEc LINE L1 3563 3713 -2502 241 65 87 0 chr3 7700401 7700447 -210336711 + CT-rich Low_complexity Low_complexity 1 50 0 1619 192 4 0 chr3 7700447 7700723 -210336435 - AluJb SINE Alu -1 311 35 665 247 26 115 chr3 7701673 7702021 -210335137 + MLT1A1 LTR MaLR 5 321 -44 481 236 214 25 chr3 7702080 7702356 -210334802 + MER41B LTR ERV1 100 297 -189 477 254 70 22 chr3 7702442 7702627 -210334531 + MER66B LTR ERV1 293 486 0 376 235 15 30 chr3 7703517 7703649 -210333509 + LTR16A1 LTR ERVL 307 436 -21 1867 146 21 0 chr3 7703798 7704086 -210333072 - AluSq SINE Alu -19 294 1 484 335 60 9 chr3 7704804 7705037 -210332121 - MIR SINE MIR -6 256 12 377 302 71 10 chr3 7705745 7706053 -210331105 + L1ME4a LINE L1 5594 5920 -201 309 261 15 97 chr3 7706070 7706155 -210331003 + L1ME4a LINE L1 5977 6049 -72 1670 149 40 7 chr3 7706155 7706430 -210330728 + AluJb SINE Alu 1 284 -28 309 261 15 97 chr3 7706430 7706478 -210330680 + L1ME4a LINE L1 6049 6099 -22 24 0 0 0 chr3 7706530 7706554 -210330604 + AT_rich Low_complexity Low_complexity 1 24 0 807 201 113 15 chr3 7706590 7706794 -210330364 + MER58A DNA MER1_type 1 224 0 299 237 52 0 chr3 7707116 7707213 -210329945 - HAL1b LINE L1 -502 846 745 573 266 75 90 chr3 7707224 7707600 -210329558 - HAL1b LINE L1 -912 436 67 2363 151 60 2 chr3 7708406 7708809 -210328349 + MSTB LTR MaLR 1 426 0 356 182 55 18 chr3 7709244 7709354 -210327804 - L1MC3 LINE L1 0 7785 7672 1694 218 8 3 chr3 7709362 7709716 -210327442 - MLT1A1 LTR MaLR 0 365 10 2765 217 41 18 chr3 7709725 7710797 -210326361 - L1MC3 LINE L1 -486 7299 6180 1473 183 87 67 chr3 7710804 7711251 -210325907 - MER31B LTR ERV1 -10 456 1 3588 186 25 30 chr3 7711251 7711464 -210325694 - L1MC3 LINE L1 -1611 6174 5962 2149 125 0 3 chr3 7711464 7711759 -210325399 - AluSc SINE Alu -10 299 6 3588 186 25 30 chr3 7711759 7712422 -210324736 - L1MC3 LINE L1 -1823 5962 5302 1197 244 178 11 chr3 7712419 7713047 -210324111 - L1MC3 LINE L1 -1306 4840 4108 * 1753 178 24 3 chr3 7713072 7713404 -210323754 + MLT1A1 LTR MaLR 1 341 -24 1172 214 67 17 chr3 7713419 7713775 -210323383 - L1MC3 LINE L1 -2065 4081 3708 4652 148 35 23 chr3 7713786 7714881 -210322277 - L1MA8 LINE L1 -73 6218 5111 3454 249 51 9 chr3 7714936 7716294 -210320864 - L1MC3 LINE L1 -2466 3680 2266 21 36 0 0 chr3 7716337 7716365 -210320793 + AT_rich Low_complexity Low_complexity 1 28 0 920 287 73 37 chr3 7716550 7716943 -210320215 - L1MC4a LINE L1 -1896 5912 5488 1719 197 7 0 chr3 7716943 7717243 -210319915 + AluJo SINE Alu 1 302 -10 920 287 73 37 chr3 7717243 7717449 -210319709 - L1MC4a LINE L1 -2320 5488 5291 527 327 78 27 chr3 7717473 7717920 -210319238 - L1MC4a LINE L1 -892 5254 4785 28 86 0 0 chr3 7717929 7717999 -210319159 + AT_rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr3 7720899 7720928 -210316230 + AT_rich Low_complexity Low_complexity 1 29 0 185 263 0 0 chr3 7721205 7721243 -210315915 + MIR SINE MIR 113 150 -58 3059 206 73 16 chr3 7721758 7723395 -210313763 - L1PBa LINE L1 -4875 1988 115 199 350 52 0 chr3 7723439 7723536 -210313622 - MIR3 SINE MIR -9 199 98 370 275 17 40 chr3 7724197 7724373 -210312785 + MIR SINE MIR 50 220 -42 189 147 0 0 chr3 7724619 7724653 -210312505 + (TC)n Simple_repeat Simple_repeat 1 34 0 1699 211 108 0 chr3 7724936 7725334 -210311824 + MER31B LTR ERV1 4 444 -22 1190 192 20 119 chr3 7725352 7725747 -210311411 - MLT1A1 LTR MaLR -2 363 8 2369 192 58 13 chr3 7726964 7727495 -210309663 - MER89 LTR ERV1 0 559 5 750 210 18 32 chr3 7727503 7727722 -210309436 - L1ME1 LINE L1 -19 6147 5932 233 259 56 9 chr3 7727777 7727885 -210309273 - L1MCc LINE L1 -5485 938 826 696 222 70 59 chr3 7727992 7728262 -210308896 - ORSL DNA AcHobo 0 275 3 436 277 18 45 chr3 7728429 7728661 -210308497 - L1MCc LINE L1 -5708 714 258 3286 92 2 38 chr3 7728878 7729348 -210307810 + MLT2A2 LTR ERVL 1 453 0 29 0 0 0 chr3 7730338 7730367 -210306791 + AT_rich Low_complexity Low_complexity 1 29 0 204 167 19 74 chr3 7730420 7730474 -210306684 + L2 LINE L2 3263 3313 0 1015 267 100 10 chr3 7730772 7731162 -210305996 - MER110 LTR ERV1 -22 469 45 231 146 21 0 chr3 7731319 7731367 -210305791 + (CAT)n Simple_repeat Simple_repeat 3 51 0 2061 194 5 3 chr3 7731396 7731788 -210305370 - LTR39 LTR ERV1 0 783 391 1433 185 34 84 chr3 7731901 7732055 -210305103 - LTR39 LTR ERV1 -388 395 235 6166 100 11 5 chr3 7732055 7733220 -210303938 + L1PA10 LINE L1 4982 6152 -16 1433 185 34 84 chr3 7733220 7733481 -210303677 - LTR39 LTR ERV1 -548 235 1 412 275 25 17 chr3 7733485 7733605 -210303553 + MIR SINE MIR 33 153 -55 229 345 78 5 chr3 7733970 7734109 -210303049 + MIR SINE MIR 1 154 -65 360 303 8 41 chr3 7734179 7734301 -210302857 - L2 LINE L2 -7 3306 3189 4655 95 23 0 chr3 7734418 7735070 -210302088 + PABL_B LTR ERV1 1 667 0 338 279 162 0 chr3 7735079 7735215 -210301943 - MIR SINE MIR -16 246 89 21 36 0 0 chr3 7736337 7736365 -210300793 + AT_rich Low_complexity Low_complexity 1 28 0 348 313 71 28 chr3 7736383 7736735 -210300423 + HAL1 LINE L1 1168 1534 -973 25 51 0 0 chr3 7736868 7736907 -210300251 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr3 7737004 7737024 -210300134 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 7737024 7737047 -210300111 + (TG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr3 7737913 7737933 -210299225 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 7737933 7737956 -210299202 + (TG)n Simple_repeat Simple_repeat 2 24 0 2757 181 42 42 chr3 7738379 7738973 -210298185 + L1MB8 LINE L1 5514 6110 -68 1748 154 68 0 chr3 7738973 7739253 -210297905 - AluSg SINE Alu -11 299 1 2757 181 42 42 chr3 7739253 7739317 -210297841 + L1MB8 LINE L1 6109 6172 -6 25 0 0 0 chr3 7739380 7739405 -210297753 + AT_rich Low_complexity Low_complexity 1 25 0 239 316 0 0 chr3 7739832 7739911 -210297247 + T-rich Low_complexity Low_complexity 1 79 0 1742 219 38 22 chr3 7740492 7740943 -210296215 - MER31A LTR ERV1 -27 458 1 191 262 0 24 chr3 7741261 7741303 -210295855 - L2 LINE L2 -92 3180 3140 288 289 48 64 chr3 7741376 7741563 -210295595 + L2 LINE L2 2650 2833 -481 25 0 0 0 chr3 7743285 7743310 -210293848 + AT_rich Low_complexity Low_complexity 1 25 0 187 273 55 18 chr3 7744576 7744631 -210292527 - MIR SINE MIR -186 76 20 537 207 59 0 chr3 7744993 7745130 -210292028 + MIR SINE MIR 98 242 -20 217 152 22 43 chr3 7745101 7745147 -210292011 + L2 LINE L2 3218 3262 -10 * 354 299 64 141 chr3 7745772 7746119 -210291039 - L2 LINE L2 -12 3260 2959 3260 157 50 10 chr3 7746119 7746699 -210290459 - LTR26 LTR ERV1 0 603 1 354 299 64 141 chr3 7746699 7746833 -210290325 - L2 LINE L2 -313 2959 2816 225 0 0 0 chr3 7747081 7747106 -210290052 + (TA)n Simple_repeat Simple_repeat 2 26 0 1281 199 45 6 chr3 7747341 7747765 -210289393 - MLT1D LTR MaLR 0 505 1 3824 69 54 163 chr3 7747847 7748619 -210288539 - LTR12 LTR ERV1 0 688 1 289 274 228 25 chr3 7748687 7748884 -210288274 + L2 LINE L2 2841 3077 -195 205 125 0 0 chr3 7748938 7748970 -210288188 - L2 LINE L2 0 3313 3282 523 287 140 37 chr3 7748970 7749371 -210287787 - LTR16A LTR ERVL 0 450 9 814 291 88 39 chr3 7749382 7749934 -210287224 - L2 LINE L2 -28 3285 2699 180 0 0 0 chr3 7750284 7750304 -210286854 + (CTTTG)n Simple_repeat Simple_repeat 3 22 0 216 307 45 23 chr3 7750550 7750638 -210286520 - L2 LINE L2 -33 3239 3150 761 177 35 0 chr3 7750642 7750783 -210286375 + MER5A DNA MER1_type 3 148 -41 2120 173 19 35 chr3 7751045 7751290 -210285868 - MSTB LTR MaLR 0 426 189 1830 92 3 76 chr3 7751290 7751606 -210285552 - L1PA10 LINE L1 -9 6159 5867 2120 173 19 35 chr3 7751606 7751789 -210285369 - MSTB LTR MaLR -237 189 5 4256 250 95 32 chr3 7753094 7753553 -210283605 + L1MB7 LINE L1 5 434 -6525 1870 191 89 0 chr3 7753553 7753946 -210283212 - MSTA LTR MaLR 0 428 1 4256 250 95 32 chr3 7753946 7755447 -210281711 + L1MB7 LINE L1 434 2107 -4852 1570 205 80 27 chr3 7755447 7755823 -210281335 - MSTD LTR MaLR 0 396 1 4256 250 95 32 chr3 7755823 7756210 -210280948 + L1MB7 LINE L1 2107 2468 -4491 444 243 84 61 chr3 7756329 7756663 -210280495 + L1MB7 LINE L1 2476 2820 -4318 6093 88 34 0 chr3 7756663 7757643 -210279515 + L1PA13 LINE L1 5152 6161 -2 444 243 84 61 chr3 7757643 7757654 -210279504 + L1MB7 LINE L1 2820 2829 -4309 2940 204 31 0 chr3 7757679 7758316 -210278842 + L1MB7 LINE L1 6328 6984 -11 344 320 0 33 chr3 7758420 7758573 -210278585 - MIR SINE MIR -95 167 20 608 288 149 10 chr3 7758677 7759094 -210278064 - L1ME4a LINE L1 -99 6022 5548 207 333 0 0 chr3 7759140 7759191 -210277967 + MIR SINE MIR 36 86 -176 273 111 89 0 chr3 7759193 7759238 -210277920 - MLT2D LTR ERVL 0 414 366 1141 219 84 43 chr3 7759323 7759670 -210277488 - MLT2D LTR ERVL -53 361 1 382 228 150 16 chr3 7759692 7759819 -210277339 + MIR SINE MIR 111 254 -8 32 86 0 0 chr3 7760001 7760082 -210277076 + AT_rich Low_complexity Low_complexity 1 81 0 1414 216 20 26 chr3 7760156 7760507 -210276651 + MLT1A1 LTR MaLR 1 349 -16 182 351 60 45 chr3 7760846 7760980 -210276178 - L2 LINE L2 -183 3089 2954 239 178 0 0 chr3 7762259 7762304 -210274854 - MER5A DNA MER1_type -137 52 8 28 29 0 0 chr3 7762481 7762516 -210274642 + AT_rich Low_complexity Low_complexity 1 35 0 258 250 0 45 chr3 7762608 7762696 -210274462 - HAL1b LINE L1 -519 829 746 2819 113 3 0 chr3 7763101 7763464 -210273694 - THE1B LTR MaLR 0 364 1 187 54 54 27 chr3 7763571 7763608 -210273550 + (TATG)n Simple_repeat Simple_repeat 2 39 0 355 336 52 8 chr3 7764013 7764147 -210273011 - MIR3 SINE MIR -63 145 6 2678 140 36 10 chr3 7764269 7764684 -210272474 - MSTA LTR MaLR 0 428 3 1800 169 13 3 chr3 7764826 7765128 -210272030 - AluJb SINE Alu -7 305 1 685 323 106 23 chr3 7765260 7765885 -210271273 + L2 LINE L2 2565 3243 -70 2535 168 24 0 chr3 7765886 7766304 -210270854 + MSTA LTR MaLR 1 428 0 1956 140 66 41 chr3 7768436 7768800 -210268358 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chr3 7769170 7769192 -210267966 + AT_rich Low_complexity Low_complexity 1 22 0 3861 120 0 0 chr3 7769517 7770049 -210267109 + L1PA8 LINE L1 5635 6166 -6 3289 224 48 8 chr3 7770463 7770827 -210266331 + MER21B LTR ERV1 4 352 -511 2606 168 26 5 chr3 7770827 7771244 -210265914 - MSTB LTR MaLR 0 426 1 3289 224 48 8 chr3 7771244 7771601 -210265557 + MER21B LTR ERV1 352 754 -109 402 150 75 0 chr3 7771890 7771970 -210265188 - MER53 DNA DNA -81 108 23 393 145 43 0 chr3 7771911 7771980 -210265178 + MER53 DNA DNA 116 187 -2 * 228 182 0 0 chr3 7773837 7773881 -210263277 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1508 208 7 11 chr3 7773882 7774166 -210262992 - AluJo SINE Alu -21 291 9 229 309 72 31 chr3 7774523 7774620 -210262538 - MIR SINE MIR -66 142 42 227 239 0 45 chr3 7774650 7774717 -210262441 + MER113 DNA MER1_type? 1 64 -457 273 119 0 0 chr3 7774786 7774828 -210262330 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2716 203 17 67 chr3 7775237 7775881 -210261277 - LTR9 LTR ERV1 0 612 1 1286 197 29 18 chr3 7775886 7776160 -210260998 - HUERS-P3 LTR ERV1 -6 8913 8299 220 263 18 0 chr3 7777054 7777111 -210260047 - L2 LINE L2 -5 3308 3251 660 330 90 44 chr3 7777160 7777615 -210259543 + LTR16C LTR ERVL 1 476 -15 495 270 0 0 chr3 7777629 7777740 -210259418 - MIR SINE MIR -115 147 37 1263 152 5 5 chr3 7777918 7778122 -210259036 + L1MB1 LINE L1 5960 6163 -5 587 233 166 14 chr3 7778156 7778379 -210258779 + MIR SINE MIR 6 262 0 1018 216 82 5 chr3 7779855 7780063 -210257095 + MER58A DNA MER1_type 1 224 0 3063 123 82 14 chr3 7780257 7780769 -210256389 - LTR10A LTR ERV1 -62 547 1 13665 205 16 21 chr3 7780818 7783896 -210253262 - LTR10A-int LTR ERV1 0 7784 4065 4985 81 33 0 chr3 7783867 7784585 -210252573 - Harlequin LTR ERV1 -4320 2576 1835 * 366 191 167 0 chr3 7784600 7784684 -210252474 + LTR8 LTR ERV1 156 253 -438 1428 91 5 5 chr3 7784688 7784886 -210252272 - LTR10A-int LTR ERV1 -2805 2781 2584 * 4632 235 14 27 chr3 7784857 7786086 -210251072 - LTR10A-int LTR ERV1 -3015 4112 2686 3141 189 5 6 chr3 7786066 7786786 -210250372 - LTR10A-int LTR ERV1 -3957 2692 2202 * 313 170 104 0 chr3 7786774 7786880 -210250278 - LTR10A-int LTR ERV1 -4705 1944 1828 * 327 157 0 0 chr3 7786897 7786967 -210250191 + CT-rich Low_complexity Low_complexity 2 71 0 4316 114 5 3 chr3 7786999 7787631 -210249527 - LTR10A-int LTR ERV1 -4783 1866 1234 2753 141 53 4 chr3 7787615 7788069 -210249089 - LTR10A-int LTR ERV1 -5628 1021 546 * 1584 180 21 7 chr3 7788183 7788467 -210248691 - LTR10A-int LTR ERV1 -6359 290 3 3096 126 78 17 chr3 7788480 7788996 -210248162 - LTR10A LTR ERV1 -62 547 1 294 241 41 76 chr3 7789522 7789667 -210247491 - L2 LINE L2 -2 3311 3172 435 277 124 10 chr3 7789677 7789879 -210247279 + MIR SINE MIR 31 255 -7 1885 177 111 60 chr3 7790100 7790621 -210246537 - LTR10A LTR ERV1 -61 548 1 17623 109 9 19 chr3 7790624 7793447 -210243711 - Harlequin LTR ERV1 -4 6645 1899 12342 57 1 3 chr3 7793447 7795714 -210241444 - L1PA5 LINE L1 0 6154 3903 17623 109 9 19 chr3 7795714 7795808 -210241350 - Harlequin LTR ERV1 -4750 1899 1806 342 238 167 0 chr3 7795809 7795893 -210241265 + LTR8 LTR ERV1 156 253 -438 4754 96 0 34 chr3 7795895 7796711 -210240447 - Harlequin LTR ERV1 -5176 1720 886 475 259 91 112 chr3 7797089 7797429 -210239729 - L2 LINE L2 -1 3271 2939 373 253 0 0 chr3 7797429 7797508 -210239650 - MER116 DNA Mariner 0 80 2 3319 166 25 77 chr3 7798110 7798839 -210238319 - LTR8 LTR ERV1 0 691 1 530 283 27 16 chr3 7799721 7799905 -210237253 - MIR SINE MIR -19 243 58 723 206 32 0 chr3 7799931 7800057 -210237101 - FLAM_A SINE Alu -12 130 1 332 385 37 7 chr3 7800091 7800226 -210236932 + MER5A DNA MER1_type 14 152 -37 345 197 215 5 chr3 7800745 7800854 -210236304 - MER5A DNA MER1_type 0 189 48 * 420 208 146 8 chr3 7800843 7800973 -210236185 - MER5A DNA MER1_type -41 148 1 252 248 9 124 chr3 7801204 7801317 -210235841 + MIR SINE MIR 82 181 -81 472 333 85 30 chr3 7801371 7801701 -210235457 + LTR33 LTR ERVL 105 452 -69 425 269 80 35 chr3 7802151 7802352 -210234806 + MLT1J LTR MaLR 301 510 -1 357 325 0 0 chr3 7802505 7802585 -210234573 + L2 LINE L2 3174 3253 -19 21 36 0 0 chr3 7802934 7802962 -210234196 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 7803754 7803775 -210233383 + AT_rich Low_complexity Low_complexity 1 21 0 380 330 46 71 chr3 7803885 7804474 -210232684 - L2 LINE L2 -2 3311 2741 1829 229 25 15 chr3 7804561 7804963 -210232195 + MLT2D LTR ERVL 1 406 -8 880 216 114 24 chr3 7805637 7805934 -210231224 + MER5C DNA MER1_type 1 324 0 23 0 0 0 chr3 7806698 7806721 -210230437 + AT_rich Low_complexity Low_complexity 1 23 0 480 195 27 87 chr3 7807285 7807434 -210229724 - MER5A DNA MER1_type -46 143 4 2093 148 0 7 chr3 7807980 7808290 -210228868 + AluSq SINE Alu 1 308 -5 474 190 153 21 chr3 7808306 7808484 -210228674 - MER58 DNA MER1_type -1 2419 1 2298 114 0 0 chr3 7808561 7808858 -210228300 - AluSc SINE Alu -12 297 1 2166 77 46 3 chr3 7808860 7809145 -210228013 - AluSx SINE Alu -15 297 1 21 0 0 0 chr3 7809145 7809166 -210227992 + AT_rich Low_complexity Low_complexity 1 21 0 407 286 160 28 chr3 7809675 7809888 -210227270 - MIR SINE MIR -11 251 11 189 107 0 0 chr3 7810066 7810094 -210227064 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 346 108 31 0 chr3 7810217 7810282 -210226876 + C-rich Low_complexity Low_complexity 4 70 0 1138 199 28 5 chr3 7810546 7810757 -210226401 - MER58A DNA MER1_type -3 221 6 663 306 41 30 chr3 7811017 7811288 -210225870 + MLT1G1 LTR MaLR 11 284 -311 354 23 0 0 chr3 7811491 7811534 -210225624 + (CA)n Simple_repeat Simple_repeat 1 43 0 865 236 15 10 chr3 7811709 7811904 -210225254 + MER58A DNA MER1_type 21 216 -8 509 281 84 0 chr3 7811910 7812077 -210225081 + MLT1G1 LTR MaLR 410 590 0 621 269 31 62 chr3 7813380 7813637 -210223521 + MIR SINE MIR 7 255 -7 2005 136 48 57 chr3 7814330 7814807 -210222351 + ERVL-B1 LTR ERVL 5285 5757 -7 1091 228 31 49 chr3 7814807 7815244 -210221914 + MLT2B1 LTR ERVL 1 434 -30 456 51 0 0 chr3 7815244 7815303 -210221855 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1091 228 31 49 chr3 7815303 7815334 -210221824 + MLT2B1 LTR ERVL 434 464 0 444 180 0 22 chr3 7815509 7815598 -210221560 + LTR16A1 LTR ERVL 371 457 0 196 152 0 0 chr3 7816790 7816823 -210220335 + MIR SINE MIR 157 189 -73 304 294 101 0 chr3 7817259 7817378 -210219780 - MER117 DNA MER1_type -65 132 2 526 162 48 0 chr3 7817460 7817565 -210219593 - L1PA11 LINE L1 0 6174 6065 1226 198 42 6 chr3 7817778 7818091 -210219067 + MER33 DNA MER1_type 1 324 0 225 288 45 30 chr3 7818419 7818485 -210218673 + L2 LINE L2 3166 3232 -40 591 293 164 8 chr3 7818629 7818885 -210218273 - LTR16C LTR ERVL -10 481 186 275 322 71 31 chr3 7820233 7820462 -210216696 + L2 LINE L2 2772 3009 -263 209 181 193 48 chr3 7820928 7821011 -210216147 + L2 LINE L2 3219 3313 0 529 272 26 79 chr3 7821901 7822302 -210214856 + L2 LINE L2 2569 3029 -243 1679 215 28 50 chr3 7822320 7822785 -210214373 + MLT2B1 LTR ERVL 6 460 -60 258 280 57 64 chr3 7822854 7823011 -210214147 + L2 LINE L2 3122 3277 -36 2206 101 0 14 chr3 7823638 7823924 -210213234 - AluSc SINE Alu -8 301 20 2038 138 7 0 chr3 7824397 7824686 -210212472 - AluSx SINE Alu -19 293 3 180 0 0 0 chr3 7824783 7824803 -210212355 + (A)n Simple_repeat Simple_repeat 1 20 0 257 248 40 40 chr3 7824898 7824999 -210212159 - Charlie7 DNA MER1_type -2506 106 6 433 188 38 47 chr3 7825352 7825552 -210211606 + MER5C DNA MER1_type 3 280 -44 956 244 58 46 chr3 7825555 7825949 -210211209 + L1MA9 LINE L1 5876 6274 -38 202 189 0 0 chr3 7825993 7826030 -210211128 + MER5C DNA MER1_type 288 324 0 1770 72 0 32 chr3 7826240 7826491 -210210667 + L1PA6 LINE L1 5912 6154 0 323 278 38 15 chr3 7826767 7826900 -210210258 + MIR SINE MIR 79 214 -48 185 402 43 0 chr3 7826955 7827072 -210210086 - L2 LINE L2 -1 3312 3191 235 390 41 8 chr3 7827108 7827231 -210209927 + L2 LINE L2 3143 3269 -3 435 280 148 7 chr3 7827257 7827591 -210209567 - LTR16C LTR ERVL -31 460 50 25 0 0 0 chr3 7827812 7827837 -210209321 + AT_rich Low_complexity Low_complexity 1 25 0 463 300 176 5 chr3 7828171 7828381 -210208777 - MIR SINE MIR -12 250 5 362 264 50 41 chr3 7831112 7831233 -210205925 - L2 LINE L2 -1 3312 3191 2160 127 3 3 chr3 7831239 7831539 -210205619 - AluSx SINE Alu -12 300 1 235 361 31 0 chr3 7831605 7831735 -210205423 - MIR SINE MIR -6 256 123 389 289 49 14 chr3 7831754 7831896 -210205262 - MIR SINE MIR 0 262 116 356 213 53 43 chr3 7832308 7832402 -210204756 - MIR3 SINE MIR -15 193 99 701 235 42 0 chr3 7832673 7832839 -210204319 - MER5B DNA MER1_type -5 173 1 463 344 46 15 chr3 7832895 7833090 -210204068 - MIR SINE MIR -4 258 58 246 225 25 12 chr3 7833511 7833591 -210203567 + MLT1L LTR MaLR 181 261 -354 247 244 122 0 chr3 7834168 7834250 -210202908 + MLT1L LTR MaLR 517 608 -7 639 311 6 0 chr3 7834266 7834443 -210202715 - MER45A DNA AcHobo 0 178 1 180 326 54 71 chr3 7835752 7835936 -210201222 + L2 LINE L2 2873 3053 -219 1526 120 6 28 chr3 7836166 7836441 -210200717 - L1PA16 LINE L1 -457 5727 5462 1450 123 27 116 chr3 7836457 7836959 -210200199 + L1PA16 LINE L1 5719 6129 -2 222 313 104 0 chr3 7837111 7837178 -210199980 + L2 LINE L2 3240 3313 0 660 233 29 71 chr3 7838250 7838565 -210198593 - MLT1E2 LTR MaLR -304 201 2 394 313 46 0 chr3 7839586 7839717 -210197441 + L2 LINE L2 2670 2806 -508 192 206 143 32 chr3 7839721 7839784 -210197374 + MER5C DNA MER1_type 1 70 -254 272 288 25 0 chr3 7839894 7839974 -210197184 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 426 256 22 112 chr3 7840023 7840335 -210196823 + L2 LINE L2 3020 3303 -10 219 186 0 0 chr3 7840378 7840421 -210196737 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 213 39 0 0 chr3 7840421 7840447 -210196711 + (CA)n Simple_repeat Simple_repeat 2 27 0 3828 148 43 40 chr3 7840450 7841223 -210195935 - LTR1 LTR ERV1 0 785 11 229 247 82 24 chr3 7842108 7842193 -210194965 - MIR SINE MIR -70 192 103 889 230 25 0 chr3 7842302 7842537 -210194621 + L1MA9 LINE L1 6035 6275 -37 531 261 84 104 chr3 7842638 7842786 -210194372 - L1MC4 LINE L1 -1 8041 7892 486 0 0 0 chr3 7842786 7842840 -210194318 + (CA)n Simple_repeat Simple_repeat 2 55 0 1110 195 125 35 chr3 7842842 7843155 -210194003 - MER2 DNA MER2_type -3 341 1 531 261 84 104 chr3 7843155 7843762 -210193396 - L1MC4 LINE L1 -151 7891 7298 613 268 93 34 chr3 7843775 7844163 -210192995 - L1M4 LINE L1 -3042 3104 2694 1100 200 17 13 chr3 7844272 7844572 -210192586 - L1MEc LINE L1 -1388 4692 4392 2126 224 48 64 chr3 7844584 7844859 -210192299 - L1MEc LINE L1 -2701 3379 3101 3123 127 8 0 chr3 7844859 7845341 -210191817 + LTR19A LTR ERV1 1 486 0 2126 224 48 64 chr3 7845341 7845507 -210191651 - L1MEc LINE L1 -2979 3101 2934 7107 57 18 3 chr3 7845507 7847026 -210190132 - L1PA6 LINE L1 -8 6146 4616 2126 224 48 64 chr3 7847026 7847484 -210189674 - L1MEc LINE L1 -3146 2934 2494 512 277 90 30 chr3 7847608 7848139 -210189019 - L1MEc LINE L1 -4574 1687 1125 2710 194 39 28 chr3 7848206 7848896 -210188262 - L1MA9 LINE L1 -108 6204 5507 226 281 117 10 chr3 7848930 7849229 -210187929 - L1MEc LINE L1 -5056 1014 684 272 150 33 0 chr3 7849229 7849289 -210187869 + (CTATT)n Simple_repeat Simple_repeat 1 62 0 257 239 60 26 chr3 7849600 7849717 -210187441 - L1MC4 LINE L1 -820 7222 7102 904 279 106 19 chr3 7849731 7850264 -210186894 - L1MC4 LINE L1 -886 6993 6346 355 167 0 0 chr3 7850267 7850333 -210186825 - L1ME2 LINE L1 -11 6153 6088 873 165 16 5 chr3 7851420 7851608 -210185550 - L1MC3 LINE L1 -1 7784 7595 1892 221 51 26 chr3 7851663 7852130 -210185028 - MLT2B1 LTR ERVL -41 479 1 1528 232 41 14 chr3 7852130 7852617 -210184541 + L1MC4 LINE L1 7542 8041 -1 2482 84 0 0 chr3 7852649 7852960 -210184198 - AluY SINE Alu 0 311 1 300 267 44 11 chr3 7853066 7853156 -210184002 - L2 LINE L2 -10 3303 3211 300 359 56 26 chr3 7853230 7853425 -210183733 - L2 LINE L2 -671 2643 2443 2445 61 0 0 chr3 7854000 7854297 -210182861 - AluY SINE Alu -10 301 5 230 253 44 33 chr3 7854335 7854426 -210182732 + HAL1 LINE L1 151 242 -2265 395 303 44 26 chr3 7854503 7854774 -210182384 + HAL1 LINE L1 2229 2504 -3 493 215 74 60 chr3 7855138 7855287 -210181871 - MER5B DNA MER1_type 0 178 28 400 296 8 0 chr3 7855389 7855521 -210181637 + MER117 DNA MER1_type 5 137 -60 23 0 0 0 chr3 7855610 7855633 -210181525 + AT_rich Low_complexity Low_complexity 1 23 0 248 325 105 44 chr3 7855808 7855922 -210181236 + L2 LINE L2 3144 3264 -8 426 283 46 16 chr3 7856575 7856886 -210180272 + MLT1G1 LTR MaLR 1 292 -298 577 286 68 32 chr3 7857244 7857464 -210179694 + MIR SINE MIR 32 259 -3 2303 62 7 36 chr3 7858097 7858402 -210178756 + AluY SINE Alu 1 296 -15 3208 70 14 0 chr3 7859567 7860122 -210177036 + L1P3 LINE L1 5137 5700 -454 366 235 137 10 chr3 7860276 7860378 -210176780 + LTR33 LTR ERVL 78 192 -329 26 0 0 0 chr3 7860853 7860879 -210176279 + AT_rich Low_complexity Low_complexity 1 26 0 1228 205 15 11 chr3 7860964 7861290 -210175868 + MSTD LTR MaLR 13 396 0 183 129 0 0 chr3 7862528 7862559 -210174599 + (A)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr3 7862612 7862640 -210174518 + AT_rich Low_complexity Low_complexity 1 28 0 1170 50 0 38 chr3 7863042 7863201 -210173957 - AluY SINE Alu -1 310 158 198 304 63 13 chr3 7864427 7864506 -210172652 + MIR3 SINE MIR 118 200 -8 473 287 0 17 chr3 7865648 7865763 -210171395 - L2 LINE L2 -1 3271 3159 1501 250 108 14 chr3 7865788 7866280 -210170878 - MLT1F LTR MaLR -2 540 3 317 371 5 27 chr3 7866424 7866610 -210170548 - L2 LINE L2 -237 3035 2854 229 122 0 0 chr3 7866757 7866798 -210170360 - L1MB3 LINE L1 -7 6176 6136 1989 213 6 15 chr3 7866804 7867273 -210169885 - L1MB4 LINE L1 -114 6066 5602 443 111 10 61 chr3 7867297 7867396 -210169762 - L1MA5 LINE L1 0 6300 6207 2433 90 0 13 chr3 7867410 7867721 -210169437 - AluSg SINE Alu -3 307 1 1895 126 7 32 chr3 7868619 7868928 -210168230 + AluSx SINE Alu 1 301 -11 413 165 10 0 chr3 7870226 7870323 -210166835 + CT-rich Low_complexity Low_complexity 3 100 0 1096 306 126 61 chr3 7871823 7872902 -210164256 + L2 LINE L2 1986 3168 -145 1985 127 7 0 chr3 7872902 7873193 -210163965 + AluY SINE Alu 1 293 -18 1096 306 126 61 chr3 7873193 7873350 -210163808 + L2 LINE L2 3168 3313 0 198 420 23 0 chr3 7873515 7873646 -210163512 - L2 LINE L2 -345 2968 2835 1189 195 125 8 chr3 7873696 7873952 -210163206 - AluJb SINE Alu -19 293 8 185 237 32 75 chr3 7874502 7874595 -210162563 + MIR SINE MIR 174 262 0 991 171 28 32 chr3 7874664 7874880 -210162278 + MER20 DNA MER1_type 1 215 -4 233 289 36 12 chr3 7874964 7875047 -210162111 + L2 LINE L2 3185 3269 -3 478 316 23 6 chr3 7875550 7875721 -210161437 + MER5B DNA MER1_type 3 176 -2 217 278 42 14 chr3 7876077 7876149 -210161009 - L2 LINE L2 -2 3270 3197 726 212 7 0 chr3 7877114 7877251 -210159907 + MER5A DNA MER1_type 2 139 -50 482 168 147 7 chr3 7877269 7877412 -210159746 - L1MC3 LINE L1 -187 7598 7436 266 197 42 0 chr3 7877421 7877492 -210159666 - L1ME2 LINE L1 -1 6163 6090 292 210 0 0 chr3 7877494 7877556 -210159602 + MER5A DNA MER1_type 127 188 -1 198 286 48 0 chr3 7877773 7877836 -210159322 - MIR SINE MIR 0 262 197 12665 135 32 10 chr3 7877844 7880022 -210157136 + Tigger1 DNA MER2_type 24 2249 -169 317 127 82 9 chr3 7880033 7880143 -210157015 + (TA)n Simple_repeat Simple_repeat 2 119 0 263 60 15 104 chr3 7880143 7880210 -210156948 + LTR66 LTR ERVL 379 439 -171 1566 197 50 9 chr3 7880258 7880578 -210156580 + LTR32 LTR ERVL 15 347 -124 666 232 0 19 chr3 7880678 7880833 -210156325 + LTR32 LTR ERVL 320 471 0 922 113 0 33 chr3 7880833 7880983 -210156175 + Tigger1 DNA MER2_type 2274 2418 0 246 358 20 47 chr3 7881507 7881655 -210155503 + MER5A DNA MER1_type 31 174 -15 718 233 28 128 chr3 7882867 7882910 -210154248 - MLT2D LTR ERVL -1 413 367 321 26 0 0 chr3 7882910 7882948 -210154210 + (TG)n Simple_repeat Simple_repeat 2 39 0 718 233 28 128 chr3 7882948 7883363 -210153795 - MLT2D LTR ERVL -47 367 1 3342 155 16 75 chr3 7883788 7884522 -210152636 + LTR8 LTR ERV1 1 691 0 604 290 6 0 chr3 7886707 7886869 -210150289 - MIR SINE MIR -8 254 92 465 256 80 8 chr3 7886922 7887047 -210150111 - MER45A DNA AcHobo -44 134 1 180 111 0 0 chr3 7887128 7887155 -210150003 + (T)n Simple_repeat Simple_repeat 1 27 0 1105 93 3 2 chr3 7887198 7887495 -210149663 + THE1A LTR MaLR 1 355 0 187 326 0 0 chr3 7890094 7890137 -210147021 - MIR SINE MIR -10 252 210 451 312 145 14 chr3 7891188 7891409 -210145749 - MIR SINE MIR 0 262 13 183 372 88 9 chr3 7891465 7891578 -210145580 + L2 LINE L2 3147 3268 -4 1147 209 83 55 chr3 7891666 7892102 -210145056 + LTR37B LTR ERV1 21 468 0 23 0 0 0 chr3 7892121 7892144 -210145014 + AT_rich Low_complexity Low_complexity 1 23 0 504 313 55 20 chr3 7892194 7892395 -210144763 - MIR SINE MIR -46 216 9 704 291 58 21 chr3 7892515 7892756 -210144402 - MIR SINE MIR 0 262 13 1770 128 89 13 chr3 7893277 7893581 -210143577 - MER1B DNA MER1_type 0 339 13 390 288 6 106 chr3 7893766 7893936 -210143222 - MER5A DNA MER1_type -36 153 1 207 222 0 48 chr3 7894178 7894241 -210142917 + GA-rich Low_complexity Low_complexity 1 60 0 1354 195 91 21 chr3 7894396 7894525 -210142633 + MLT1A1 LTR MaLR 3 121 -244 2345 84 7 0 chr3 7894525 7894823 -210142335 + AluY SINE Alu 6 305 -6 1354 195 91 21 chr3 7894823 7895032 -210142126 + MLT1A1 LTR MaLR 121 365 0 267 295 71 27 chr3 7895345 7895457 -210141701 + L2 LINE L2 3153 3269 -3 321 241 19 46 chr3 7896503 7896611 -210140547 - MLT1G1 LTR MaLR -25 570 466 510 289 50 5 chr3 7896688 7896929 -210140229 - MLT1H1 LTR MaLR -291 264 8 727 272 110 4 chr3 7896929 7897157 -210140001 + MIR SINE MIR 11 262 0 2556 61 0 0 chr3 7899005 7899316 -210137842 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 7899410 7899432 -210137726 + AT_rich Low_complexity Low_complexity 1 22 0 219 209 12 23 chr3 7899547 7899633 -210137525 + (TTA)n Simple_repeat Simple_repeat 3 87 0 211 203 31 0 chr3 7899901 7899965 -210137193 + CT-rich Low_complexity Low_complexity 3 68 0 852 202 52 15 chr3 7900151 7900418 -210136740 + Charlie1b DNA MER1_type 149 425 -98 10022 38 4 1 chr3 7900421 7902421 -210134737 - L1PA4 LINE L1 -2 6153 4144 2755 40 0 0 chr3 7902421 7902775 -210134383 + L1P LINE L1 3831 4184 -1962 251 222 62 37 chr3 7902786 7902867 -210134291 + Charlie1b DNA MER1_type 435 517 -6 472 309 101 53 chr3 7903022 7903700 -210133458 - L1M4 LINE L1 -1085 5061 4356 279 185 31 15 chr3 7903989 7904054 -210133104 - MSTB2 LTR MaLR -391 66 1 1159 174 28 0 chr3 7905114 7905326 -210131832 - MER20 DNA MER1_type -1 218 1 27 62 0 0 chr3 7906560 7906608 -210130550 + AT_rich Low_complexity Low_complexity 1 48 0 2167 118 0 3 chr3 7906687 7906984 -210130174 + AluSg SINE Alu 1 296 -14 243 329 27 7 chr3 7907095 7907241 -210129917 - L1ME LINE L1 -233 5888 5740 1715 200 115 16 chr3 7907373 7907798 -210129360 + MLT1C LTR MaLR 1 467 0 182 197 15 76 chr3 7908052 7908118 -210129040 - MIR SINE MIR -16 246 185 410 269 15 54 chr3 7909786 7909916 -210127242 - L2 LINE L2 0 3272 3148 2381 67 0 0 chr3 7911425 7911736 -210125422 - AluY SINE Alu 0 311 1 442 316 58 12 chr3 7912129 7912300 -210124858 + MER5A DNA MER1_type 3 181 -8 509 304 40 13 chr3 7912921 7913145 -210124013 + MIR SINE MIR 33 262 0 274 222 74 28 chr3 7913505 7913613 -210123545 + LTR67 LTR ERVL 442 554 -3 285 302 37 12 chr3 7913712 7913894 -210123264 - L1ME LINE L1 -242 5879 5694 2410 191 57 28 chr3 7915157 7915792 -210121366 - Charlie1b DNA MER1_type -18 505 2091 1038 183 33 15 chr3 7915792 7916138 -210121020 - MER31B LTR ERV1 -72 394 1 * 2954 214 70 30 chr3 7916138 7916897 -210120261 - Charlie1a DNA MER1_type -664 791 2 330 26 0 0 chr3 7917013 7917052 -210120106 + (TG)n Simple_repeat Simple_repeat 2 40 0 356 265 0 10 chr3 7917052 7917154 -210120004 + GA-rich Low_complexity Low_complexity 2 102 0 248 322 0 33 chr3 7917235 7917325 -210119833 - LTR16C LTR ERVL 0 491 405 867 101 62 0 chr3 7918113 7918242 -210118916 + AluSc SINE Alu 165 301 -8 272 328 104 13 chr3 7918380 7918697 -210118461 + L1ME4a LINE L1 5598 5943 -178 2584 20 0 0 chr3 7920060 7920352 -210116806 + AluY SINE Alu 1 292 -19 546 355 22 16 chr3 7920912 7921095 -210116063 - MER91A DNA MER1_type -12 184 1 1004 262 32 26 chr3 7921767 7922080 -210115078 - MER110 LTR ERV1 0 491 177 198 217 33 67 chr3 7922659 7922719 -210114439 + MIR SINE MIR 99 145 -63 601 259 49 11 chr3 7922749 7922934 -210114224 - MIR SINE MIR -13 249 58 341 320 28 118 chr3 7923180 7923536 -210113622 - L3 LINE CR1 -208 1369 1046 446 330 14 46 chr3 7923794 7924012 -210113146 + MIR SINE MIR 26 236 -26 2038 148 3 0 chr3 7924483 7924781 -210112377 - AluSx SINE Alu -13 299 1 222 258 54 54 chr3 7925893 7925986 -210111172 - MIR SINE MIR -94 168 76 1429 265 41 89 chr3 7926154 7927059 -210110099 - L1ME LINE L1 -5182 888 28 769 238 16 21 chr3 7927303 7927492 -210109666 - MER58A DNA MER1_type 0 224 37 4534 150 29 37 chr3 7928564 7929025 -210108133 - Tigger1 DNA MER2_type -9 2409 1957 3590 87 8 0 chr3 7929025 7929519 -210107639 + L1PA14 LINE L1 5664 6161 0 4534 150 29 37 chr3 7929519 7929898 -210107260 - Tigger1 DNA MER2_type -461 1957 1576 15122 167 18 24 chr3 7929904 7935912 -210101246 - L1MA3 LINE L1 0 7724 1091 333 0 0 0 chr3 7935912 7935949 -210101209 + (TG)n Simple_repeat Simple_repeat 2 38 0 15122 167 18 24 chr3 7935949 7937020 -210100138 - L1MA3 LINE L1 -6633 1091 16 9815 131 30 1 chr3 7937020 7938544 -210098614 - Tigger1 DNA MER2_type -828 1590 24 358 258 13 71 chr3 7939480 7939494 -210097664 + MER5A DNA MER1_type 1 5 -184 292 238 62 94 chr3 7939494 7939654 -210097504 - MER5A DNA MER1_type -2 187 33 561 327 115 4 chr3 7940639 7940865 -210096293 - MIR SINE MIR -10 252 2 185 292 0 31 chr3 7941073 7941138 -210096020 - MIR3 SINE MIR -13 195 133 261 0 0 0 chr3 7941297 7941326 -210095832 + (T)n Simple_repeat Simple_repeat 1 29 0 471 260 78 32 chr3 7941436 7941590 -210095568 - MIR SINE MIR 0 262 102 198 0 0 0 chr3 7941650 7941672 -210095486 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 8294 118 17 33 chr3 7942774 7944071 -210093087 - THE1B-int LTR MaLR -300 1280 5 2129 146 30 0 chr3 7944082 7944417 -210092741 - THE1B LTR MaLR -12 352 8 554 212 48 7 chr3 7944459 7944605 -210092553 - L1MD2 LINE L1 -13 6582 6431 3263 205 28 20 chr3 7944606 7945468 -210091690 - L1MD1 LINE L1 -208 6270 5515 2750 188 21 0 chr3 7945469 7945938 -210091220 - LTR42 LTR ERVL 0 495 17 279 273 0 15 chr3 7945956 7946022 -210091136 - PABL_B-int LTR ERV1 -696 6062 5998 432 302 0 0 chr3 7946270 7946376 -210090782 - PABL_B-int LTR ERV1 -450 6672 6567 207 0 0 0 chr3 7946527 7946550 -210090608 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 69 0 0 chr3 7947335 7947364 -210089794 + (A)n Simple_repeat Simple_repeat 1 29 0 295 321 44 44 chr3 7947931 7948313 -210088845 - HERVL18 LTR ERVL -1266 4077 3763 281 336 25 21 chr3 7948699 7948934 -210088224 - HERVL18 LTR ERVL -2542 3505 3270 883 329 56 46 chr3 7949110 7949839 -210087319 - HERVL18 LTR ERVL -2407 2959 2193 2085 171 53 19 chr3 7949839 7950254 -210086904 + MSTB1 LTR MaLR 4 432 0 883 329 56 46 chr3 7950254 7950735 -210086423 - HERVL18 LTR ERVL -3173 2193 1718 2564 175 50 8 chr3 7952525 7953000 -210084158 - LTR42 LTR ERVL 0 495 1 1549 253 6 37 chr3 7953000 7953509 -210083649 - L1MD1 LINE L1 -866 5516 5024 452 284 50 44 chr3 7953516 7953789 -210083369 - L1MD1 LINE L1 -3686 2696 2414 1700 189 0 0 chr3 7953789 7954086 -210083072 - AluJb SINE Alu -15 297 1 452 284 50 44 chr3 7954086 7954231 -210082927 - L1MD1 LINE L1 -3968 2414 2271 445 318 61 20 chr3 7954529 7955013 -210082145 - L1MD1 LINE L1 -4512 1870 1266 393 365 66 5 chr3 7955301 7955512 -210081646 - L1MD1 LINE L1 -5451 921 698 847 163 94 0 chr3 7955832 7955992 -210081166 + FRAM SINE Alu 1 174 -2 2746 84 25 5 chr3 7956059 7956453 -210080705 - L1PA13 LINE L1 0 6163 5762 1416 211 33 86 chr3 7956462 7956941 -210080217 + L1ME3 LINE L1 5709 6162 0 334 226 24 36 chr3 7957740 7957824 -210079334 + L2 LINE L2 3189 3271 -1 236 264 38 0 chr3 7958086 7958139 -210079019 - L2 LINE L2 -11 3261 3207 211 258 21 62 chr3 7958625 7958722 -210078436 + MIR SINE MIR 170 262 0 481 332 35 26 chr3 7958752 7958984 -210078174 + MIR SINE MIR 12 245 -17 247 310 0 0 chr3 7960560 7960618 -210076540 + polypyrimidine Low_complexity Low_complexity 3 60 0 25 0 0 0 chr3 7963844 7963869 -210073289 + AT_rich Low_complexity Low_complexity 1 25 0 768 261 86 27 chr3 8014075 8014596 -210022562 - HAL1b LINE L1 0 1348 797 243 61 0 0 chr3 8015218 8015251 -210021907 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2059 108 0 31 chr3 8015253 8015541 -210021617 - AluSx SINE Alu -33 279 1 208 256 179 96 chr3 8016561 8016717 -210020441 - MIR3 SINE MIR -38 170 2 340 266 190 32 chr3 8017105 8017329 -210019829 + L1ME4a LINE L1 5701 5959 -162 744 237 41 46 chr3 8017394 8017613 -210019545 + MER20 DNA MER1_type 2 219 0 2590 123 5 2 chr3 8018166 8018566 -210018592 + L1PB1 LINE L1 5751 6151 0 23 54 0 0 chr3 8018566 8018603 -210018555 + AT_rich Low_complexity Low_complexity 1 37 0 359 295 100 53 chr3 8018607 8019092 -210018066 - L1MC/D LINE L1 -747 5938 5783 1880 217 61 68 chr3 8019113 8019671 -210017487 + MLT2B3 LTR ERVL 1 554 0 2217 287 76 24 chr3 8019722 8021668 -210015490 - L1MC/D LINE L1 -1007 5533 3467 * 10331 204 24 32 chr3 8021665 8025384 -210011774 - L1PA16 LINE L1 -2 6164 2475 3506 281 86 15 chr3 8025380 8025670 -210011488 - L1MC/D LINE L1 -5149 1391 1123 * 9262 34 1 19 chr3 8025670 8027603 -210009555 - L1PA3 LINE L1 0 6155 4243 3506 281 86 15 chr3 8027603 8028586 -210008572 - L1MC/D LINE L1 -5417 1123 27 1895 286 100 38 chr3 8028589 8030948 -210006210 - L1ME LINE L1 -2295 3785 1302 498 251 107 2 chr3 8030950 8031132 -210006026 + MER58A DNA MER1_type 9 213 0 462 95 0 0 chr3 8031105 8031168 -210005990 + MADE1 DNA Mariner 1 63 -17 * 268 258 51 73 chr3 8031177 8031355 -210005803 - L1ME LINE L1 -4929 1151 978 334 268 176 35 chr3 8031420 8031529 -210005629 - L1ME LINE L1 -5148 934 842 2382 80 6 6 chr3 8031529 8031842 -210005316 - AluSq SINE Alu 0 313 1 334 268 176 35 chr3 8031842 8032052 -210005106 - L1ME LINE L1 -5240 842 677 2319 45 28 0 chr3 8032851 8033140 -210004018 + AluY SINE Alu 1 297 -14 242 216 54 40 chr3 8033140 8033214 -210003944 - MER72 LTR ERV1 -643 79 5 804 155 14 20 chr3 8033216 8033364 -210003794 - FRAM SINE Alu -26 150 4 2325 78 10 0 chr3 8033380 8033675 -210003483 - AluSc SINE Alu -11 298 1 421 211 41 88 chr3 8033701 8033872 -210003286 + L1MC4a LINE L1 5730 5892 -1916 1833 151 18 0 chr3 8033873 8034152 -210003006 + AluSx SINE Alu 1 284 -28 2434 57 0 0 chr3 8034152 8034448 -210002710 + AluY SINE Alu 1 296 -15 347 281 34 0 chr3 8034949 8035038 -210002120 - L2 LINE L2 0 3313 3222 207 100 0 0 chr3 8035141 8035171 -210001987 + (CATA)n Simple_repeat Simple_repeat 2 31 0 862 303 85 8 chr3 8036513 8036876 -210000282 - MLT1I LTR MaLR 0 409 19 572 283 72 0 chr3 8037120 8037300 -209999858 - LTR16C LTR ERVL -2 489 297 317 272 19 19 chr3 8037313 8037416 -209999742 - LTR16B LTR ERVL 0 464 362 494 326 80 5 chr3 8037484 8037671 -209999487 - LTR16B LTR ERVL -263 201 1 348 326 96 17 chr3 8037678 8037856 -209999302 - LTR16C LTR ERVL -210 281 90 2260 109 0 6 chr3 8038041 8038352 -209998806 + AluSq SINE Alu 1 309 -4 388 217 12 12 chr3 8038484 8038567 -209998591 + MIR SINE MIR 86 168 -94 358 274 44 9 chr3 8038581 8038694 -209998464 + MIR SINE MIR 94 210 -52 399 313 94 40 chr3 8038940 8039215 -209997943 + MLT1J LTR MaLR 218 507 -4 203 260 41 55 chr3 8039490 8039563 -209997595 - MIR SINE MIR 0 262 191 389 97 14 0 chr3 8040182 8040254 -209996904 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2062 131 86 0 chr3 8040271 8040607 -209996551 + Tigger2 DNA MER2_type 2353 2717 -1 234 81 0 0 chr3 8040607 8040644 -209996514 + (TG)n Simple_repeat Simple_repeat 2 38 0 316 179 208 38 chr3 8041332 8041438 -209995720 - L3 LINE CR1 -116 1461 1338 185 108 27 0 chr3 8041717 8041754 -209995404 + A-rich Low_complexity Low_complexity 1 38 0 709 224 0 34 chr3 8041928 8042075 -209995083 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1382 177 4 38 chr3 8042073 8042226 -209994932 + Tigger3(Golem) DNA MER2_type 2782 2924 -114 1702 225 80 104 chr3 8042226 8043072 -209994086 + LTR1B LTR ERV1 1 826 0 1382 177 4 38 chr3 8043072 8043184 -209993974 + Tigger3(Golem) DNA MER2_type 2924 3038 0 586 264 52 26 chr3 8043634 8043903 -209993255 - MER97c DNA MER1_type? -1 1089 814 875 259 95 15 chr3 8044181 8044443 -209992715 - MER97b DNA MER1_type? -447 606 324 574 273 65 96 chr3 8044579 8044628 -209992530 + MLT1J LTR MaLR 166 215 -296 1793 116 0 4 chr3 8044628 8044878 -209992280 + AluSg SINE Alu 47 295 -15 574 273 65 96 chr3 8044878 8045150 -209992008 + MLT1J LTR MaLR 215 477 -34 181 214 309 0 chr3 8045315 8045399 -209991759 + MIR SINE MIR 142 251 -11 659 230 105 0 chr3 8045680 8045832 -209991326 + MER96 DNA MER1_type? 8 175 0 545 272 11 88 chr3 8046081 8046364 -209990794 - L1ME3 LINE L1 0 6162 5902 * 1121 246 62 22 chr3 8046361 8046825 -209990333 - L1M4 LINE L1 -1715 4431 3949 2277 229 35 63 chr3 8046909 8047211 -209989947 - L1ME1 LINE L1 -44 6122 5813 1702 163 3 10 chr3 8047211 8047499 -209989659 - AluSx SINE Alu -26 286 1 2277 229 35 63 chr3 8047499 8047991 -209989167 - L1ME1 LINE L1 -353 5813 5350 6709 75 2 5 chr3 8048048 8049359 -209987799 - L1PA6 LINE L1 0 6154 4843 27124 40 3 0 chr3 8049361 8053434 -209983724 + L1PA4 LINE L1 2013 6092 -63 1926 218 46 3 chr3 8053933 8054323 -209982835 - ERVL LTR ERVL -4169 1595 1189 3269 243 73 4 chr3 8054323 8055122 -209982036 - ERVL LTR ERVL -4735 1029 176 634 271 65 72 chr3 8055396 8055920 -209981238 - L1MC4 LINE L1 -820 7222 6703 627 201 7 0 chr3 8055928 8056067 -209981091 - L1MA4A LINE L1 0 6303 6164 2275 189 33 2 chr3 8056067 8056553 -209980605 - L1 LINE L1 -1118 5028 4528 1251 230 84 44 chr3 8056753 8057096 -209980062 - LTR18A LTR ERVL 0 357 1 2012 123 0 32 chr3 8057097 8057406 -209979752 - HERVL18 LTR ERVL 0 6047 5749 1628 151 4 4 chr3 8057407 8057659 -209979499 - HERVL18 LTR ERVL -262 5785 5534 1654 290 39 31 chr3 8057974 8058560 -209978598 + MLT1E LTR MaLR 3 593 0 301 193 0 0 chr3 8058741 8058798 -209978360 - Charlie5 DNA MER1_type -27 2585 2529 37938 88 5 6 chr3 8058911 8064771 -209972387 - L1PA4 LINE L1 -292 5863 11 2183 261 79 19 chr3 8064778 8065677 -209971481 - L1M4 LINE L1 -789 5357 4405 644 224 93 52 chr3 8065717 8065866 -209971292 - L1MCc LINE L1 -6130 293 128 2075 148 0 3 chr3 8065866 8065884 -209971274 - AluSq SINE Alu -9 304 287 333 0 0 0 chr3 8065884 8065921 -209971237 + (TG)n Simple_repeat Simple_repeat 2 38 0 2075 148 0 3 chr3 8065921 8066206 -209970952 - AluSq SINE Alu -26 287 2 644 224 93 52 chr3 8066206 8066324 -209970834 - L1MCc LINE L1 -6295 128 16 479 270 96 17 chr3 8066329 8066684 -209970474 - L1M4 LINE L1 -3177 2969 2587 2016 121 7 33 chr3 8066695 8067001 -209970157 + AluSx SINE Alu 1 298 -14 527 291 24 12 chr3 8067011 8067262 -209969896 - L1M4 LINE L1 -3625 2521 2268 184 294 0 20 chr3 8067407 8067458 -209969700 - L2 LINE L2 -1 3312 3263 271 228 0 18 chr3 8068671 8068728 -209968430 - L2 LINE L2 -94 3219 3164 298 313 91 20 chr3 8070020 8070119 -209967039 + MIR SINE MIR 41 146 -62 294 29 0 0 chr3 8070446 8070481 -209966677 + (TG)n Simple_repeat Simple_repeat 1 35 0 189 373 59 0 chr3 8070519 8070621 -209966537 + L2 LINE L2 3151 3258 -14 1976 133 0 29 chr3 8070745 8071053 -209966105 - AluSx SINE Alu -13 299 1 350 228 60 92 chr3 8071755 8071939 -209965219 + MER5B DNA MER1_type 1 178 0 4236 158 44 31 chr3 8073274 8074186 -209962972 - L1MA9 LINE L1 -2 6310 5387 1092 132 114 9 chr3 8074184 8074411 -209962747 - L1PA15 LINE L1 0 6165 5915 * 557 198 0 16 chr3 8074409 8074530 -209962628 + L1P LINE L1 4527 4645 -1501 * 4127 151 20 35 chr3 8074543 8075261 -209961897 - L1PA15 LINE L1 -257 5908 5181 228 35 0 0 chr3 8075261 8075290 -209961868 + (TG)n Simple_repeat Simple_repeat 1 29 0 4127 151 20 35 chr3 8075290 8076102 -209961056 - L1PA15 LINE L1 -984 5181 4410 4896 214 20 7 chr3 8076112 8077275 -209959883 + L1P LINE L1 2995 4172 -1974 2158 147 57 22 chr3 8077276 8077789 -209959369 + MLT2A2 LTR ERVL 1 554 0 968 193 23 0 chr3 8077791 8078009 -209959149 + L1P LINE L1 4171 4393 -1753 * 3555 242 39 45 chr3 8078006 8078891 -209958267 - L1MA9 LINE L1 -748 5398 4509 1196 129 0 0 chr3 8078891 8079061 -209958097 - AluSq SINE Alu -11 302 133 3555 242 39 45 chr3 8079061 8079191 -209957967 - L1MA9 LINE L1 -1637 4509 4380 189 0 0 0 chr3 8079191 8079212 -209957946 + (TG)n Simple_repeat Simple_repeat 2 22 0 3555 242 39 45 chr3 8079212 8080239 -209956919 - L1MA9 LINE L1 -1766 4380 3293 1104 211 32 12 chr3 8080261 8080507 -209956651 + AluJo SINE Alu 61 311 -1 22 0 0 0 chr3 8080559 8080581 -209956577 + AT_rich Low_complexity Low_complexity 1 22 0 2427 76 0 0 chr3 8080581 8080884 -209956274 - AluY SINE Alu -8 303 1 384 235 53 8 chr3 8081116 8081248 -209955910 + MER113 DNA MER1_type? 1 138 -383 23 54 0 0 chr3 8081278 8081315 -209955843 + AT_rich Low_complexity Low_complexity 1 37 0 206 232 36 18 chr3 8084730 8084786 -209952372 - MIR SINE MIR -154 108 52 254 273 121 0 chr3 8085260 8085359 -209951799 - MLT1K LTR MaLR -106 482 372 1422 113 85 0 chr3 8085836 8086048 -209951110 + MER30 DNA MER1_type 1 230 0 436 299 17 69 chr3 8087175 8087406 -209949752 + MLT1G1 LTR MaLR 60 278 -317 920 112 11 28 chr3 8087542 8087720 -209949438 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 475 306 121 94 chr3 8088291 8088469 -209948689 - L2 LINE L2 0 3272 3100 1659 86 18 0 chr3 8088469 8088691 -209948467 + MER30 DNA MER1_type 5 230 0 475 306 121 94 chr3 8088691 8089295 -209947863 - L2 LINE L2 -172 3100 2430 2167 121 0 0 chr3 8089295 8089600 -209947558 + AluSc SINE Alu 1 305 0 475 306 121 94 chr3 8089600 8089889 -209947269 - L2 LINE L2 -842 2430 2150 21 36 0 0 chr3 8089981 8090009 -209947149 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 8090666 8090698 -209946460 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 2522 74 0 0 chr3 8091446 8091758 -209945400 - AluSx SINE Alu 0 312 1 225 0 0 0 chr3 8092090 8092115 -209945043 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 246 105 0 0 chr3 8092145 8092183 -209944975 + (A)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 8092433 8092462 -209944696 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 291 235 92 50 chr3 8092524 8092643 -209944515 - L2 LINE L2 -61 3252 3129 1313 287 85 29 chr3 8092688 8093117 -209944041 + L2 LINE L2 2462 2929 -384 2464 213 25 46 chr3 8093117 8093752 -209943406 + MLT1E3 LTR MaLR 1 622 -2 1313 287 85 29 chr3 8093752 8093887 -209943271 + L2 LINE L2 2929 3055 -258 1971 153 155 23 chr3 8093956 8094388 -209942770 - LTR45B LTR ERV1 0 489 1 336 309 9 36 chr3 8094578 8094688 -209942470 + L2 LINE L2 3173 3279 -34 348 387 61 21 chr3 8094710 8094998 -209942160 - L2 LINE L2 -219 3094 2785 1674 212 111 3 chr3 8094998 8095384 -209941774 + MSTA LTR MaLR 1 428 0 348 387 61 21 chr3 8095384 8095451 -209941707 - L2 LINE L2 -528 2785 2722 223 295 49 0 chr3 8095759 8095820 -209941338 + L2 LINE L2 3228 3291 -22 281 325 145 30 chr3 8095889 8096089 -209941069 + MIR SINE MIR 40 262 0 2854 65 17 12 chr3 8096206 8096608 -209940550 - MLT2A1 LTR ERVL -40 404 1 2377 67 0 7 chr3 8096620 8096918 -209940240 - AluY SINE Alu -15 296 1 24 0 0 0 chr3 8097996 8098020 -209939138 + AT_rich Low_complexity Low_complexity 1 24 0 288 319 115 44 chr3 8098292 8098474 -209938684 - LTR16C LTR ERVL -9 482 288 272 164 0 36 chr3 8099363 8099418 -209937740 - MIR SINE MIR -98 164 112 838 179 48 42 chr3 8099427 8099595 -209937563 - MER5A DNA MER1_type -20 169 1 201 292 186 9 chr3 8099647 8099760 -209937398 + L2 LINE L2 3134 3266 -6 282 244 108 114 chr3 8100371 8100547 -209936611 + MER5B DNA MER1_type 4 178 0 1097 181 67 99 chr3 8100555 8100709 -209936449 - MER58B DNA MER1_type -2079 341 184 1852 156 54 23 chr3 8100709 8101062 -209936096 - THE1B LTR MaLR 0 364 1 10896 103 35 0 chr3 8101062 8102589 -209934569 - THE1B-int LTR MaLR 0 1580 1 1879 154 78 23 chr3 8102589 8102934 -209934224 - THE1B LTR MaLR 0 364 1 1097 181 67 99 chr3 8102934 8103119 -209934039 - MER58B DNA MER1_type -2233 187 11 1140 164 37 85 chr3 8104516 8104906 -209932252 - MLT1A1 LTR MaLR -4 392 1 1637 212 113 42 chr3 8105777 8106281 -209930877 - MLT1F LTR MaLR 0 542 3 341 277 63 19 chr3 8106623 8106782 -209930376 - L1ME LINE L1 -570 5551 5386 22 0 0 0 chr3 8106895 8106917 -209930241 + AT_rich Low_complexity Low_complexity 1 22 0 1948 158 43 3 chr3 8108128 8108475 -209928683 + MER46B DNA MER2_type 1 236 0 187 237 68 93 chr3 8108983 8109101 -209928057 + MIR SINE MIR 147 261 -1 234 105 0 0 chr3 8109822 8109860 -209927298 + (CA)n Simple_repeat Simple_repeat 2 39 0 249 261 11 11 chr3 8110190 8110282 -209926876 - MLT1I LTR MaLR -8 401 310 248 181 28 17 chr3 8111013 8111085 -209926073 - MLT1J1 LTR MaLR -328 118 45 566 134 0 0 chr3 8111186 8111283 -209925875 - L1P LINE L1 -1389 4757 4661 3490 65 0 0 chr3 8111283 8111766 -209925392 + L1PA8 LINE L1 5691 6173 0 560 255 108 28 chr3 8112268 8112480 -209924678 + MIR SINE MIR 34 262 0 180 111 0 0 chr3 8112637 8112664 -209924494 + (CCA)n Simple_repeat Simple_repeat 1 27 0 349 121 69 0 chr3 8112677 8112735 -209924423 + ERVL LTR ERVL 4862 4923 -841 309 26 0 0 chr3 8112740 8112778 -209924380 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 75 25 0 chr3 8112905 8112945 -209924213 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 282 9 0 chr3 8113091 8113201 -209923957 + (TA)n Simple_repeat Simple_repeat 1 111 0 1591 231 5 21 chr3 8113203 8113580 -209923578 - MLT2D LTR ERVL -43 371 1 760 192 0 30 chr3 8113580 8113747 -209923411 - ERVL-D LTR ERVL -7 5757 5596 288 158 0 0 chr3 8113747 8113804 -209923354 + (TA)n Simple_repeat Simple_repeat 1 57 0 180 158 0 0 chr3 8113854 8113892 -209923266 + (TA)n Simple_repeat Simple_repeat 1 38 0 271 255 108 20 chr3 8114003 8114105 -209923053 - MIR SINE MIR -60 202 92 210 71 0 0 chr3 8114199 8114227 -209922931 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1977 173 32 28 chr3 8116197 8116745 -209920413 - MLT2A2 LTR ERVL 0 554 2 1949 91 22 0 chr3 8117439 8117714 -209919444 + L1PA10 LINE L1 5879 6159 -9 396 0 0 0 chr3 8117715 8117759 -209919399 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr3 8117787 8117817 -209919341 + AT_rich Low_complexity Low_complexity 1 30 0 738 243 117 73 chr3 8117895 8118288 -209918870 + MLT1D LTR MaLR 2 421 -84 2110 141 33 25 chr3 8118288 8118649 -209918509 + THE1B LTR MaLR 1 364 0 738 243 117 73 chr3 8118649 8118733 -209918425 + MLT1D LTR MaLR 421 500 -5 245 376 9 9 chr3 8118892 8119001 -209918157 - L2 LINE L2 -15 3298 3190 31 26 0 0 chr3 8119641 8119679 -209917479 + AT_rich Low_complexity Low_complexity 1 38 0 2409 46 0 3 chr3 8120172 8120489 -209916669 - AluY SINE Alu 0 316 1 216 308 13 13 chr3 8122012 8122090 -209915068 + CT-rich Low_complexity Low_complexity 2 79 0 498 254 65 72 chr3 8122184 8122723 -209914435 + L1ME3 LINE L1 4456 4990 -1156 354 281 102 10 chr3 8122822 8123018 -209914140 + L1ME3 LINE L1 5119 5332 -814 2120 138 3 3 chr3 8123065 8123377 -209913781 + AluSx SINE Alu 1 312 0 3292 165 78 44 chr3 8123435 8124276 -209912882 + L1MC3 LINE L1 6908 7777 -8 412 265 137 24 chr3 8124404 8124702 -209912456 + L1ME3 LINE L1 5560 5894 -276 608 191 0 17 chr3 8125048 8125163 -209911995 - FLAM_A SINE Alu -19 114 2 206 226 129 43 chr3 8126382 8126475 -209910683 - L2 LINE L2 -5 3308 3208 523 299 114 0 chr3 8126518 8126685 -209910473 + MIR SINE MIR 49 234 -28 199 188 0 0 chr3 8126785 8126817 -209910341 - MIR SINE MIR -16 246 215 2155 159 55 26 chr3 8127911 8128327 -209908831 - MSTC LTR MaLR 0 428 1 568 279 128 11 chr3 8128327 8128506 -209908652 - MIR SINE MIR -4 258 59 2614 108 59 16 chr3 8128675 8129033 -209908125 + MLT2A1 LTR ERVL 1 342 -102 321 26 0 0 chr3 8129033 8129071 -209908087 + (TC)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr3 8129070 8129091 -209908067 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2614 108 59 16 chr3 8129071 8129158 -209908000 + MLT2A1 LTR ERVL 342 444 0 305 23 0 23 chr3 8129171 8129214 -209907944 + (TA)n Simple_repeat Simple_repeat 2 43 0 314 88 18 18 chr3 8129261 8129318 -209907840 + MLT2B1 LTR ERVL 464 520 0 27641 70 11 5 chr3 8129318 8133027 -209904131 + HERVL-B1-A1 LTR ERVL 1 3731 -1923 3949 134 176 28 chr3 8133027 8134014 -209903144 + MER11B LTR ERVK 1 1232 -4 14487 69 7 4 chr3 8134019 8135942 -209901216 + HERVL-B1-A1 LTR ERVL 3726 5654 0 1255 110 46 5 chr3 8135942 8136161 -209900997 + MLT2A1 LTR ERVL 1 228 -216 508 90 13 0 chr3 8136161 8136239 -209900919 + L1PA16 LINE L1 6079 6157 -9 323 291 57 19 chr3 8137145 8137303 -209899855 + MLT1K LTR MaLR 354 517 -71 22 70 0 0 chr3 8137801 8137844 -209899314 + AT_rich Low_complexity Low_complexity 1 43 0 394 241 143 0 chr3 8137892 8138025 -209899133 + MER103 DNA DNA 13 164 -2 213 291 121 21 chr3 8138146 8138287 -209898871 + MIR SINE MIR 72 226 -36 417 54 0 0 chr3 8138430 8138486 -209898672 + (CA)n Simple_repeat Simple_repeat 1 56 0 420 306 65 18 chr3 8139707 8139881 -209897277 - MIR SINE MIR -62 146 3 189 0 0 0 chr3 8141336 8141357 -209895801 + (CA)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr3 8141934 8141968 -209895190 + AT_rich Low_complexity Low_complexity 1 34 0 6479 48 0 0 chr3 8141968 8142788 -209894370 - L1PA5 LINE L1 -6 6148 5329 372 316 90 11 chr3 8144245 8144422 -209892736 - MIR SINE MIR -56 206 16 1227 217 126 7 chr3 8144635 8144944 -209892214 - MSTD LTR MaLR -50 346 1 723 251 108 35 chr3 8145313 8145655 -209891503 + MER110A LTR ERV1 40 406 -62 23595 134 52 50 chr3 8145693 8150549 -209886609 - L1P LINE L1 -1268 4878 12 1083 146 25 33 chr3 8150685 8150925 -209886233 - THE1C LTR MaLR -2 373 136 27584 132 17 55 chr3 8150925 8156908 -209880250 - L1P3 LINE L1 -401 5753 13 8735 141 24 28 chr3 8156917 8158440 -209878718 - THE1C-int LTR MaLR -63 1517 1 1695 160 26 50 chr3 8158442 8158824 -209878334 - THE1C LTR MaLR -2 373 1 495 0 0 0 chr3 8159080 8159135 -209878023 + (CA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr3 8159197 8159218 -209877940 + AT_rich Low_complexity Low_complexity 1 21 0 1007 253 0 0 chr3 8159432 8159653 -209877505 + MER58A DNA MER1_type 1 221 -3 242 243 157 0 chr3 8159666 8159757 -209877401 + MER5A DNA MER1_type 4 112 -77 253 250 11 11 chr3 8161755 8161843 -209875315 + MLT1J1 LTR MaLR 341 428 -18 192 188 83 0 chr3 8162181 8162229 -209874929 + L2 LINE L2 3221 3272 0 205 254 0 70 chr3 8163138 8163209 -209873949 + MIR SINE MIR 197 262 0 634 318 102 27 chr3 8163595 8164139 -209873019 - L2 LINE L2 0 3313 2730 514 304 44 0 chr3 8165088 8165269 -209871889 - MER5A DNA MER1_type 0 189 1 1687 246 22 44 chr3 8166190 8166243 -209870915 + L1MA8 LINE L1 466 519 -6970 180 0 0 0 chr3 8166243 8166263 -209870895 + (CA)n Simple_repeat Simple_repeat 1 20 0 1687 246 22 44 chr3 8166263 8166704 -209870454 + L1MA8 LINE L1 519 949 -6540 1856 244 31 30 chr3 8166865 8167642 -209869516 + L1MA8 LINE L1 2018 2763 -4802 * 2840 208 48 37 chr3 8167634 8167823 -209869335 + L1MA8 LINE L1 3636 3821 -3744 2621 163 45 60 chr3 8167823 8168444 -209868714 + LTR9 LTR ERV1 1 612 0 2840 208 48 37 chr3 8168444 8169084 -209868074 + L1MA8 LINE L1 3821 4474 -3091 3320 174 17 8 chr3 8169087 8169686 -209867472 - MER50 LTR ERV1 -20 714 111 960 187 38 8 chr3 8169697 8169959 -209867199 - L1 LINE L1 -2813 3333 3064 317 238 0 40 chr3 8169960 8170061 -209867097 + MER50 LTR ERV1 1 97 -637 10123 173 24 27 chr3 8170070 8173135 -209864023 + L1MA8 LINE L1 4657 7709 -1 268 219 0 184 chr3 8173248 8173362 -209863796 + MER63 DNA MER1_type 2 720 -342 617 234 83 5 chr3 8173424 8173616 -209863542 + MER63 DNA MER1_type 838 1044 -18 912 306 62 12 chr3 8173616 8174034 -209863124 - LTR16B LTR ERVL -23 441 3 1955 185 55 47 chr3 8174294 8174716 -209862442 - MSTB LTR MaLR 0 426 2 938 279 20 8 chr3 8175310 8175561 -209861597 + MIR SINE MIR 1 254 -8 273 57 0 0 chr3 8175562 8175597 -209861561 + (CAT)n Simple_repeat Simple_repeat 1 35 0 222 329 24 24 chr3 8176860 8176942 -209860216 + MIR SINE MIR 11 92 -170 246 216 196 41 chr3 8177529 8177626 -209859532 - MLT1K LTR MaLR -326 262 151 23 0 0 0 chr3 8178380 8178403 -209858755 + AT_rich Low_complexity Low_complexity 1 23 0 240 344 96 24 chr3 8179717 8179842 -209857316 + MER5A DNA MER1_type 34 167 -22 494 299 123 25 chr3 8180528 8181056 -209856102 + HAL1 LINE L1 735 1314 -1193 1139 292 73 41 chr3 8181235 8182057 -209855101 + HAL1 LINE L1 1627 2474 -33 2289 214 49 43 chr3 8182666 8183221 -209853937 - MER74A LTR ERVL 0 558 1 288 303 115 8 chr3 8183692 8183814 -209853344 - MER117 DNA MER1_type -29 168 34 249 336 79 58 chr3 8183862 8184103 -209853055 - L2 LINE L2 -202 3070 2825 371 240 41 18 chr3 8184112 8184283 -209852875 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 73 0 0 chr3 8184288 8184343 -209852815 + AT_rich Low_complexity Low_complexity 1 55 0 566 289 27 0 chr3 8184396 8184545 -209852613 - MIR SINE MIR -108 154 2 350 300 64 27 chr3 8185866 8185976 -209851182 + L2 LINE L2 3139 3252 -20 200 182 0 0 chr3 8186194 8186227 -209850931 + (CAAAG)n Simple_repeat Simple_repeat 4 36 0 386 167 77 13 chr3 8186435 8186513 -209850645 - LTR54 LTR ERV1 -427 83 1 658 235 109 53 chr3 8186751 8186806 -209850352 + MER5C DNA MER1_type 6 56 -268 5393 48 31 3 chr3 8186806 8187507 -209849651 + LTR30 LTR ERV1 1 721 -1 658 235 109 53 chr3 8187507 8187753 -209849405 + MER5C DNA MER1_type 56 324 0 248 0 31 0 chr3 8187805 8187837 -209849321 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2100 79 0 0 chr3 8188173 8188480 -209848678 - AluY SINE Alu 0 307 1 265 341 53 8 chr3 8188777 8188909 -209848249 - MIR SINE MIR -6 256 119 25 65 0 0 chr3 8189162 8189208 -209847950 + AT_rich Low_complexity Low_complexity 1 46 0 595 213 0 31 chr3 8189208 8189335 -209847823 - AluJb SINE Alu -189 123 1 964 246 5 5 chr3 8189337 8189548 -209847610 - MER58A DNA MER1_type -10 214 4 1295 153 60 0 chr3 8191467 8191682 -209845476 + MER30 DNA MER1_type 3 230 0 287 395 0 0 chr3 8191696 8191830 -209845328 + MIR SINE MIR 31 164 -98 246 243 90 54 chr3 8192329 8192440 -209844718 - MLT1J2 LTR MaLR -302 148 34 761 163 0 0 chr3 8192489 8192612 -209844546 + FLAM_C SINE Alu 1 123 -20 903 229 25 4 chr3 8193443 8193683 -209843475 - L1MA4 LINE L1 -5 6295 6051 198 338 38 0 chr3 8193739 8193819 -209843339 + L2 LINE L2 3231 3313 0 709 260 105 47 chr3 8193933 8194229 -209842929 - MLT1I LTR MaLR -95 314 2 242 262 0 39 chr3 8194891 8194994 -209842164 + CT-rich Low_complexity Low_complexity 3 101 0 188 282 39 64 chr3 8195034 8195112 -209842046 - L2 LINE L2 -19 3294 3219 280 336 69 30 chr3 8195637 8195768 -209841390 - L2 LINE L2 0 3272 3137 1454 141 0 4 chr3 8195983 8196224 -209840934 - L1MA4 LINE L1 -5 6295 6056 1018 276 22 63 chr3 8196327 8196453 -209840705 - L1ME3A LINE L1 -5 6165 6035 2311 41 7 3 chr3 8196453 8196745 -209840413 + AluY SINE Alu 1 293 -18 1018 276 22 63 chr3 8196745 8197063 -209840095 - L1ME3A LINE L1 -135 6035 5739 368 232 108 77 chr3 8197095 8197354 -209839804 - MER113 DNA MER1_type? -236 285 19 283 306 194 11 chr3 8197832 8197916 -209839242 - MIR SINE MIR -18 244 177 1373 207 107 52 chr3 8197916 8198395 -209838763 + MLT1D LTR MaLR 1 505 0 283 306 194 11 chr3 8198395 8198496 -209838662 - MIR SINE MIR -85 177 25 488 264 54 86 chr3 8198707 8199021 -209838137 - MLT1K LTR MaLR -24 564 261 304 304 0 49 chr3 8200136 8200238 -209836920 - MIR3 SINE MIR -45 163 67 391 336 17 0 chr3 8200334 8200453 -209836705 + L2 LINE L2 3184 3304 -9 438 324 105 5 chr3 8201650 8201869 -209835289 + MIR SINE MIR 16 256 -6 295 309 9 45 chr3 8202537 8202647 -209834511 - L2 LINE L2 -5 3308 3203 * 694 290 42 9 chr3 8202626 8202843 -209834315 - MIR SINE MIR -2 260 37 209 336 112 14 chr3 8203103 8203246 -209833912 + MIR SINE MIR 100 256 -6 21 36 0 0 chr3 8205068 8205096 -209832062 + AT_rich Low_complexity Low_complexity 1 28 0 2605 39 0 3 chr3 8205188 8205493 -209831665 + AluY SINE Alu 1 304 -7 327 49 0 0 chr3 8205985 8206026 -209831132 + (TG)n Simple_repeat Simple_repeat 2 42 0 1071 207 9 26 chr3 8206660 8206887 -209830271 + MER58A DNA MER1_type 1 223 -1 216 291 13 25 chr3 8207349 8207428 -209829730 + MIR3 SINE MIR 122 199 -9 818 201 4 107 chr3 8208593 8208837 -209828321 + MER20 DNA MER1_type 1 219 0 332 268 108 56 chr3 8210134 8210298 -209826860 - MIR3 SINE MIR -15 193 20 395 173 12 0 chr3 8210366 8210447 -209826711 + MER53 DNA DNA 101 182 -7 489 223 236 0 chr3 8211262 8211419 -209825739 + MIR SINE MIR 14 207 -55 2319 83 0 10 chr3 8211720 8212020 -209825138 + AluSc SINE Alu 1 297 -12 261 329 12 0 chr3 8212029 8212114 -209825044 + L2 LINE L2 3182 3267 -5 1041 256 78 43 chr3 8213241 8213612 -209823546 + MLT1I LTR MaLR 26 409 0 249 384 0 0 chr3 8214326 8214425 -209822733 + MIR SINE MIR 52 150 -112 191 349 39 29 chr3 8215688 8215798 -209821360 + MIR SINE MIR 16 127 -81 998 217 109 29 chr3 8215864 8216177 -209820981 - MER58B DNA MER1_type -3 338 1 398 284 71 13 chr3 8216207 8216362 -209820796 + MLT1J2 LTR MaLR 287 450 0 285 338 40 15 chr3 8217238 8217434 -209819724 + MIR SINE MIR 7 206 -56 272 155 14 0 chr3 8217561 8217632 -209819526 + CT-rich Low_complexity Low_complexity 1 72 0 375 73 0 0 chr3 8217636 8217691 -209819467 + (CA)n Simple_repeat Simple_repeat 2 56 0 2447 264 48 13 chr3 8218639 8219389 -209817769 + MER20B DNA MER1_type 8 783 0 430 367 87 31 chr3 8219645 8219934 -209817224 - L3 LINE CR1 -7 1570 1266 376 374 92 18 chr3 8220437 8220827 -209816331 + L2 LINE L2 2892 3310 -3 183 291 255 7 chr3 8220916 8221057 -209816101 - L3 LINE CR1 -330 1247 1072 7625 23 0 4 chr3 8221212 8222238 -209814920 - L1PA4 LINE L1 -2 6153 5128 238 333 0 0 chr3 8222842 8222908 -209814250 - MER117 DNA MER1_type -8 189 124 282 326 109 42 chr3 8223976 8224169 -209812989 - MIR SINE MIR -14 248 43 264 380 78 14 chr3 8224428 8224570 -209812588 - L2 LINE L2 -5 3267 3117 1027 81 5 38 chr3 8225123 8225129 -209812029 + (TTTC)n Simple_repeat Simple_repeat 1 185 0 1027 81 5 38 chr3 8225129 8225315 -209811843 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1888 164 10 6 chr3 8225722 8226033 -209811125 + AluSx SINE Alu 1 312 0 394 195 46 0 chr3 8226109 8226196 -209810962 - MLT1H LTR MaLR -1 548 458 692 282 29 31 chr3 8226273 8226557 -209810601 - MLT1H LTR MaLR -222 327 1 282 163 24 171 chr3 8227603 8227726 -209809432 - L2 LINE L2 -5 3308 3204 297 53 0 0 chr3 8228380 8228418 -209808740 + U3 snRNA snRNA 1 38 -179 547 308 51 40 chr3 8228593 8228846 -209808312 - MIR SINE MIR -5 257 2 222 179 0 89 chr3 8228911 8228967 -209808191 + MIR SINE MIR 103 153 -109 210 71 0 0 chr3 8229359 8229387 -209807771 + (TG)n Simple_repeat Simple_repeat 1 28 0 800 134 12 18 chr3 8229453 8229617 -209807541 + CT-rich Low_complexity Low_complexity 4 166 0 1518 169 19 8 chr3 8229621 8229881 -209807277 - AluJb SINE Alu -38 274 12 907 288 58 27 chr3 8230280 8230572 -209806586 + L3 LINE CR1 1166 1466 -111 566 335 162 34 chr3 8230833 8230899 -209806259 + L2 LINE L2 2054 2110 -1204 1846 187 12 0 chr3 8230899 8231242 -209805916 - MER7A DNA MER2_type -1 345 1 566 335 162 34 chr3 8231242 8231730 -209805428 + L2 LINE L2 2110 2679 -635 232 379 92 15 chr3 8231855 8232244 -209804914 + L2 LINE L2 2687 3142 -171 366 322 94 35 chr3 8232410 8232612 -209804546 + MIR SINE MIR 13 226 -36 350 294 22 0 chr3 8232784 8232876 -209804282 + L1M4 LINE L1 707 800 -5742 5047 227 81 53 chr3 8233275 8234925 -209802233 + L1MB7 LINE L1 -248 1447 -4833 745 250 66 19 chr3 8234949 8235184 -209801974 + L1MB7 LINE L1 1594 1813 -4571 4401 222 42 11 chr3 8235276 8236321 -209800837 + L1MB7 LINE L1 4387 5519 -901 2529 145 33 9 chr3 8236321 8236742 -209800416 - Tigger2a DNA MER2_type -3 431 1 4401 222 42 11 chr3 8236742 8237543 -209799615 + L1MB7 LINE L1 5519 6293 -127 579 270 104 26 chr3 8237980 8238210 -209798948 - MLT1L LTR MaLR 0 615 368 426 20 0 0 chr3 8238367 8238418 -209798740 + (TG)n Simple_repeat Simple_repeat 2 52 0 219 273 0 0 chr3 8240202 8240257 -209796901 + (TA)n Simple_repeat Simple_repeat 1 55 0 1483 211 19 14 chr3 8240319 8240684 -209796474 + L1MB8 LINE L1 5811 6177 -1 252 0 0 0 chr3 8241486 8241514 -209795644 + (T)n Simple_repeat Simple_repeat 1 28 0 333 332 109 31 chr3 8241533 8241726 -209795432 - MER102b DNA MER1_type -6 335 128 236 311 133 0 chr3 8242398 8242488 -209794670 - MIR3 SINE MIR -93 115 14 3803 117 21 54 chr3 8245992 8246693 -209790465 + L1MA5A LINE L1 5619 6296 -1 4388 80 173 49 chr3 8246862 8247597 -209789561 - LTR12 LTR ERV1 0 826 1 442 0 0 33 chr3 8247768 8247828 -209789330 + (TA)n Simple_repeat Simple_repeat 2 59 0 1583 196 0 16 chr3 8248116 8248428 -209788730 + AluJo SINE Alu 1 307 -5 595 131 0 0 chr3 8248579 8248663 -209788495 - LTR12 LTR ERV1 -151 563 480 306 297 17 0 chr3 8248663 8248781 -209788377 - LTR30 LTR ERV1 -79 643 524 842 57 205 0 chr3 8248781 8248903 -209788255 - LTR12 LTR ERV1 -456 258 112 329 299 18 18 chr3 8248903 8249107 -209788051 + (TA)n Simple_repeat Simple_repeat 1 204 0 4356 32 2 2 chr3 8249203 8249698 -209787460 - SVA Other Other -17 1369 875 623 255 134 89 chr3 8249709 8249962 -209787196 + L1MC5 LINE L1 6711 6951 -1010 360 0 0 0 chr3 8249962 8250002 -209787156 + (TG)n Simple_repeat Simple_repeat 1 40 0 623 255 134 89 chr3 8250002 8250254 -209786904 + L1MC5 LINE L1 6951 7239 -722 2373 172 73 36 chr3 8250302 8250889 -209786269 - L1MB7 LINE L1 -20 6164 5556 753 241 42 31 chr3 8250877 8251138 -209786020 + L1MC5 LINE L1 7268 7531 -430 * 1613 141 84 0 chr3 8251143 8251332 -209785826 - AluSx SINE Alu 0 333 110 216 0 0 0 chr3 8251332 8251356 -209785802 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1613 141 84 0 chr3 8251356 8251477 -209785681 - AluSx SINE Alu -223 110 1 2641 153 47 10 chr3 8251792 8252277 -209784881 - L1MC1 LINE L1 -9 6324 5822 23 33 0 0 chr3 8252531 8252561 -209784597 + AT_rich Low_complexity Low_complexity 1 30 0 261 316 153 20 chr3 8253328 8253629 -209783529 + MLT1H LTR MaLR 22 362 -187 249 229 0 0 chr3 8253677 8253725 -209783433 + MLT1H LTR MaLR 501 548 -1 248 369 34 45 chr3 8253747 8253923 -209783235 + L2 LINE L2 2931 3104 -168 214 215 141 89 chr3 8254055 8254190 -209782968 + MIR SINE MIR 121 262 0 927 225 63 106 chr3 8254247 8254768 -209782390 - L1MC5 LINE L1 -838 7123 6625 3711 180 12 8 chr3 8254769 8255502 -209781656 - L1MA8 LINE L1 -3 6288 5553 1127 207 152 30 chr3 8255867 8256341 -209780817 - L1MC5 LINE L1 -302 7659 7128 274 167 167 67 chr3 8256366 8256456 -209780702 + L1MC5 LINE L1 6930 7028 -933 191 307 132 44 chr3 8256687 8256801 -209780357 + L2 LINE L2 3172 3295 -18 252 130 0 0 chr3 8257641 8257687 -209779471 + (TATG)n Simple_repeat Simple_repeat 1 46 0 292 306 131 45 chr3 8259512 8259711 -209777447 + MIR SINE MIR 2 217 -45 299 157 333 0 chr3 8260276 8260378 -209776780 + MER103 DNA DNA 16 151 -15 516 267 22 15 chr3 8260398 8260533 -209776625 - MIR SINE MIR -5 257 122 300 23 0 45 chr3 8261688 8261732 -209775426 - L1PA8 LINE L1 -6 6166 6125 306 167 22 11 chr3 8262596 8262686 -209774472 + (TA)n Simple_repeat Simple_repeat 2 92 0 3622 181 16 68 chr3 8264493 8265342 -209771816 + Tigger6a DNA MER2_type 1 805 -278 3381 191 37 4 chr3 8265358 8266066 -209771092 - L1MD1 LINE L1 -7 6629 5899 3133 254 24 41 chr3 8266073 8266728 -209770430 - L1MD1 LINE L1 -1602 4938 4312 5420 18 0 2 chr3 8266728 8267351 -209769807 - L1PA3 LINE L1 0 6155 5534 3133 254 24 41 chr3 8267351 8267933 -209769225 - L1MD1 LINE L1 -2228 4312 3722 * 5294 216 57 25 chr3 8267928 8270146 -209767012 - L1MD1 LINE L1 -4009 2531 18 1065 177 55 19 chr3 8270149 8270420 -209766738 + Tigger6a DNA MER2_type 803 1083 0 196 368 58 0 chr3 8270503 8270590 -209766568 - L2 LINE L2 -33 3280 3189 286 321 18 0 chr3 8270850 8270959 -209766199 - MIR SINE MIR -58 204 94 362 365 207 22 chr3 8271353 8271715 -209765443 + L2 LINE L2 2836 3264 -8 373 288 54 9 chr3 8273284 8273395 -209763763 + L2 LINE L2 3193 3308 -5 206 62 31 0 chr3 8273398 8273430 -209763728 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 299 318 80 66 chr3 8273713 8274062 -209763096 + L3 LINE CR1 1199 1552 -25 300 91 0 0 chr3 8274525 8274569 -209762589 + (TC)n Simple_repeat Simple_repeat 1 44 0 243 306 0 14 chr3 8274569 8274641 -209762517 + MIR SINE MIR 189 259 -3 299 322 43 9 chr3 8275548 8275663 -209761495 + MIR3 SINE MIR 82 200 -8 225 94 0 0 chr3 8276996 8277028 -209760130 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 432 151 226 0 chr3 8277028 8277134 -209760024 - L1MB4 LINE L1 -95 6085 5956 192 443 0 0 chr3 8277300 8277388 -209759770 + L2 LINE L2 3162 3249 -23 24 0 0 0 chr3 8278567 8278591 -209758567 + AT_rich Low_complexity Low_complexity 1 24 0 216 267 0 0 chr3 8278958 8279003 -209758155 + MIR SINE MIR 29 73 -135 1586 241 28 19 chr3 8279928 8280360 -209756798 - MER110 LTR ERV1 -4 487 52 860 181 7 7 chr3 8281184 8281333 -209755825 - FRAM SINE Alu -30 146 1 539 282 6 28 chr3 8282277 8282458 -209754700 - MER5B DNA MER1_type -1 177 1 360 320 53 8 chr3 8282628 8282762 -209754396 - MIR SINE MIR -66 142 34 2050 139 53 11 chr3 8284443 8284803 -209752355 + THE1C LTR MaLR 1 375 0 203 387 43 0 chr3 8286114 8286207 -209750951 + MIR3 SINE MIR 63 159 -49 309 341 73 8 chr3 8286291 8286459 -209750699 - MIR SINE MIR -61 147 10 3327 110 47 4 chr3 8286826 8287316 -209749842 - MER9 LTR ERVK 0 511 1 680 314 65 14 chr3 8287323 8287613 -209749545 - MLT1K LTR MaLR -15 573 269 2208 123 16 21 chr3 8288349 8288722 -209748436 + THE1C LTR MaLR 1 371 -4 212 304 14 0 chr3 8288751 8288820 -209748338 - L2 LINE L2 -1 3271 3202 509 307 46 55 chr3 8289399 8289617 -209747541 - MIR SINE MIR -29 233 18 1650 193 24 24 chr3 8290054 8290463 -209746695 + L1MA10 LINE L1 5924 6332 -2 1857 86 0 0 chr3 8290495 8290753 -209746405 + AluY SINE Alu 50 307 0 1036 198 231 41 chr3 8291306 8291695 -209745463 + MLT2B1 LTR ERVL 6 534 -20 189 0 0 0 chr3 8291742 8291763 -209745395 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 343 0 27 chr3 8292954 8293027 -209744131 + MIR SINE MIR 33 103 -105 180 0 0 0 chr3 8293596 8293616 -209743542 + (T)n Simple_repeat Simple_repeat 1 20 0 276 179 119 15 chr3 8293737 8293804 -209743354 + MLT1I LTR MaLR 336 409 0 230 282 0 137 chr3 8294127 8294251 -209742907 - MER5B DNA MER1_type -3 175 69 584 292 12 6 chr3 8294289 8294457 -209742701 + MIR SINE MIR 93 261 -1 187 270 43 61 chr3 8294562 8294677 -209742481 + L2 LINE L2 3184 3296 -17 4306 36 0 2 chr3 8295364 8295886 -209741272 - L1PA4 LINE L1 -6 6149 5629 10891 31 1 1 chr3 8295886 8297209 -209739949 + L1P LINE L1 4035 5358 -788 540 226 123 7 chr3 8297558 8297704 -209739454 - MER58B DNA MER1_type -4 337 175 25 31 0 0 chr3 8298313 8298345 -209738813 + AT_rich Low_complexity Low_complexity 1 32 0 366 226 0 43 chr3 8298494 8298587 -209738571 - L1MC4 LINE L1 -1340 6702 6614 530 303 142 43 chr3 8300264 8300985 -209736173 - L2 LINE L2 -111 3202 2360 675 296 186 31 chr3 8301810 8302229 -209734929 - MLT1G1 LTR MaLR -36 559 76 1629 148 21 4 chr3 8302302 8302716 -209734442 + L1PA16 LINE L1 5117 5539 -627 1793 133 81 27 chr3 8302716 8303048 -209734110 + L1PA16 LINE L1 5807 6156 -10 269 377 15 8 chr3 8304111 8304241 -209732917 + L2 LINE L2 2238 2368 -946 1027 277 65 34 chr3 8304276 8304720 -209732438 + MLT1C LTR MaLR 10 467 0 451 355 77 31 chr3 8304774 8305126 -209732032 + L2 LINE L2 2480 2847 -467 4988 204 43 19 chr3 8305129 8307129 -209730029 - L1MC2 LINE L1 -10 6334 4295 610 162 8 0 chr3 8307233 8307350 -209729808 - L1MB3 LINE L1 -19 6164 6047 2573 52 0 0 chr3 8307351 8307660 -209729498 - AluY SINE Alu -2 309 1 2027 182 84 25 chr3 8307669 8308147 -209729011 - L1MB3 LINE L1 -1 6182 5677 188 314 20 0 chr3 8308523 8308574 -209728584 + L2 LINE L2 2541 2592 -722 554 154 103 45 chr3 8308744 8308850 -209728308 - L1MCb LINE L1 -4103 2461 2342 1002 211 63 89 chr3 8308850 8309233 -209727925 + MLT1A2 LTR MaLR 1 373 -1 554 154 103 45 chr3 8309233 8309282 -209727876 - L1MCb LINE L1 -4222 2342 2297 5164 179 31 10 chr3 8309292 8310615 -209726543 - L1PA16 LINE L1 0 6166 4810 2307 155 22 89 chr3 8310617 8311209 -209725949 + L1PA16 LINE L1 4265 4816 -1330 * 2832 216 101 56 chr3 8311199 8311389 -209725769 - L1MCb LINE L1 -4260 2304 2124 1860 136 25 0 chr3 8311389 8311697 -209725461 + AluSq SINE Alu 1 315 0 2832 216 101 56 chr3 8311697 8311931 -209725227 - L1MCb LINE L1 -4440 2124 1902 637 54 0 21 chr3 8311931 8312024 -209725134 - L1PA8 LINE L1 0 6172 6082 2832 216 101 56 chr3 8312024 8313725 -209723433 - L1MCb LINE L1 -4662 1902 3 223 345 0 62 chr3 8313778 8313866 -209723292 + L2 LINE L2 2868 2949 -364 3199 138 53 0 chr3 8313866 8314417 -209722741 + LTR19B LTR ERV1 1 580 0 223 345 0 62 chr3 8314417 8314441 -209722717 + L2 LINE L2 2949 2973 -340 184 295 156 8 chr3 8314556 8314678 -209722480 + L2 LINE L2 3144 3283 -30 27 29 0 0 chr3 8316234 8316268 -209720890 + AT_rich Low_complexity Low_complexity 1 34 0 195 129 0 0 chr3 8316788 8316819 -209720339 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1635 57 0 0 chr3 8316891 8317084 -209720074 + AluY SINE Alu 110 302 -9 1057 224 23 0 chr3 8317405 8317624 -209719534 - MER58A DNA MER1_type 0 224 1 638 214 53 78 chr3 8317634 8317840 -209719318 - MER3 DNA MER1_type -1 208 8 281 224 0 53 chr3 8318048 8318124 -209719034 + MIR SINE MIR 112 183 -79 470 362 25 5 chr3 8318224 8318423 -209718735 + MIR SINE MIR 42 244 -18 21 0 0 0 chr3 8318538 8318559 -209718599 + AT_rich Low_complexity Low_complexity 1 21 0 270 267 22 44 chr3 8319022 8319112 -209718046 + MER81 DNA DNA 27 114 0 1552 175 22 56 chr3 8319277 8319597 -209717561 + AluJo SINE Alu 1 309 -3 268 163 82 0 chr3 8320035 8320084 -209717074 - MER5B DNA MER1_type -3 175 123 2575 102 66 31 chr3 8320092 8320259 -209716899 + L1PA10 LINE L1 5730 5890 -278 2243 114 0 3 chr3 8320259 8320565 -209716593 + AluSg SINE Alu 1 305 -5 2575 102 66 31 chr3 8320565 8320820 -209716338 + L1PA10 LINE L1 5890 6167 -1 331 357 16 8 chr3 8320902 8321031 -209716127 - MER5B DNA MER1_type -48 130 1 264 30 0 0 chr3 8321063 8321096 -209716062 + (CA)n Simple_repeat Simple_repeat 1 33 0 226 275 116 0 chr3 8321104 8321173 -209715985 + MIR SINE MIR 39 115 -93 1837 151 48 12 chr3 8322664 8322995 -209714163 + MER2 DNA MER2_type 2 344 0 543 194 73 0 chr3 8325255 8325379 -209711779 - L1MA9 LINE L1 0 6312 6180 2293 102 0 0 chr3 8325405 8325708 -209711450 + AluSc SINE Alu 1 303 -6 263 317 41 8 chr3 8325736 8325859 -209711299 + MIR SINE MIR 136 262 0 2123 70 0 3 chr3 8326724 8327011 -209710147 - L1PA5 LINE L1 0 6154 5869 576 221 8 31 chr3 8328197 8328324 -209708834 + MER21B LTR ERV1 343 466 -397 29 28 0 0 chr3 8328874 8328910 -209708248 + AT_rich Low_complexity Low_complexity 1 36 0 2399 253 42 39 chr3 8330100 8331932 -209705226 + L1MCc LINE L1 807 2906 -4035 2240 98 3 0 chr3 8331932 8332237 -209704921 - AluSp SINE Alu -5 308 3 2399 253 42 39 chr3 8332237 8333273 -209703885 + L1MCc LINE L1 2906 3937 -3004 2264 97 20 0 chr3 8333279 8333577 -209703581 + AluSx SINE Alu 3 306 -6 3486 159 65 11 chr3 8333579 8334241 -209702917 + L1MC1 LINE L1 5635 6332 -1 374 341 33 76 chr3 8334275 8334395 -209702763 + L2 LINE L2 2876 2985 -328 2560 45 0 3 chr3 8334395 8334704 -209702454 - AluY SINE Alu -3 308 1 374 341 33 76 chr3 8334704 8334794 -209702364 + L2 LINE L2 2985 3077 -236 23 0 0 0 chr3 8334927 8334950 -209702208 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr3 8334951 8334974 -209702184 + (T)n Simple_repeat Simple_repeat 1 23 0 801 192 7 0 chr3 8334980 8335126 -209702032 + L1ME2 LINE L1 5452 5598 -735 647 165 0 0 chr3 8335138 8335259 -209701899 - L1MC/D LINE L1 -2542 5453 5333 369 262 197 35 chr3 8336444 8336902 -209700256 - MLT1H1 LTR MaLR -6 588 1 22 0 0 0 chr3 8337249 8337271 -209699887 + AT_rich Low_complexity Low_complexity 1 22 0 1901 64 0 49 chr3 8337323 8337587 -209699571 - AluY SINE Alu -13 298 48 515 253 123 30 chr3 8337758 8338027 -209699131 + MER46C DNA MER2_type 1 294 -44 243 227 149 58 chr3 8338059 8338213 -209698945 - MIR SINE MIR 0 262 95 26 0 0 0 chr3 8339524 8339550 -209697608 + AT_rich Low_complexity Low_complexity 1 26 0 3535 225 45 24 chr3 8340162 8341068 -209696090 - MER45B DNA AcHobo -27 1013 89 430 314 31 63 chr3 8342724 8342947 -209694211 - MIR SINE MIR -31 231 16 270 253 21 84 chr3 8343715 8343810 -209693348 - L2 LINE L2 -2 3311 3223 773 204 25 6 chr3 8343849 8344006 -209693152 + MER97a DNA MER1_type? 20 179 -715 976 261 65 36 chr3 8344044 8344492 -209692666 + L1ME2 LINE L1 5685 6145 -19 438 108 0 0 chr3 8344750 8344815 -209692343 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2350 105 0 0 chr3 8344978 8345283 -209691875 - AluSc SINE Alu -4 305 1 180 0 0 0 chr3 8346010 8346030 -209691128 + (A)n Simple_repeat Simple_repeat 1 20 0 2277 90 3 3 chr3 8346121 8346421 -209690737 - AluSx SINE Alu -2 310 11 22 35 0 0 chr3 8346689 8346718 -209690440 + AT_rich Low_complexity Low_complexity 1 29 0 1593 213 101 0 chr3 8346845 8347211 -209689947 + MLT1A2-int LTR MaLR 1333 1735 0 233 212 197 0 chr3 8347211 8347277 -209689881 + MLT1A2 LTR MaLR 1 79 -295 340 309 0 0 chr3 8347317 8347414 -209689744 + MLT1A2 LTR MaLR 60 156 -218 756 184 21 154 chr3 8347445 8347679 -209689479 + MLT1A2 LTR MaLR 173 374 0 407 335 6 29 chr3 8347723 8347893 -209689265 - MER5A DNA MER1_type -23 166 1 442 327 17 14 chr3 8347944 8348130 -209689028 + MIR SINE MIR 25 209 -53 293 331 182 7 chr3 8348302 8348456 -209688702 - MIR SINE MIR -15 247 67 528 284 91 33 chr3 8349562 8349805 -209687353 - MIR SINE MIR -4 258 2 210 274 19 57 chr3 8350500 8350606 -209686552 - MIR SINE MIR -54 208 107 216 224 17 17 chr3 8351132 8351190 -209685968 + CT-rich Low_complexity Low_complexity 2 59 0 1654 142 54 85 chr3 8351455 8351842 -209685316 - THE1C LTR MaLR 0 375 1 1926 175 0 0 chr3 8352238 8352546 -209684612 - AluSx SINE Alu -4 308 1 2201 105 0 32 chr3 8352966 8353281 -209683877 + AluSg1 SINE Alu 1 305 -4 1488 214 61 12 chr3 8354325 8354667 -209682491 + MLT1A1 LTR MaLR 1 359 -6 737 273 16 0 chr3 8355228 8355411 -209681747 + MER58A DNA MER1_type 1 186 -38 793 201 17 6 chr3 8355426 8355605 -209681553 - L1MD1 LINE L1 -8 6234 6054 2851 188 35 25 chr3 8355616 8355708 -209681450 - L1MD1 LINE L1 -252 5990 5900 2406 123 17 3 chr3 8355708 8356067 -209681091 + THE1B LTR MaLR 1 364 0 2851 188 35 25 chr3 8356067 8356640 -209680518 - L1MD1 LINE L1 -342 5900 5319 1906 178 73 8 chr3 8356839 8357209 -209679949 + MSTD LTR MaLR 1 394 -2 5502 263 68 38 chr3 8357213 8358896 -209678262 + MSTD-int LTR MaLR 2 1735 0 1868 176 92 0 chr3 8358896 8359255 -209677903 + MSTD LTR MaLR 1 392 -4 22 56 0 0 chr3 8359598 8359634 -209677524 + AT_rich Low_complexity Low_complexity 1 36 0 464 281 103 50 chr3 8360332 8360574 -209676584 + MIR SINE MIR 5 259 -3 370 152 38 13 chr3 8360758 8360837 -209676321 + LTR56 LTR ERV1 349 429 -16 264 154 0 0 chr3 8361679 8361731 -209675427 + (TG)n Simple_repeat Simple_repeat 1 52 0 321 360 71 22 chr3 8361758 8361983 -209675175 - L3 LINE CR1 -159 1418 1183 422 314 41 41 chr3 8362139 8362359 -209674799 - MIR SINE MIR -37 225 6 327 49 0 0 chr3 8362800 8362841 -209674317 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 0 40 0 chr3 8362909 8362934 -209674224 + (TTA)n Simple_repeat Simple_repeat 2 27 0 684 198 152 5 chr3 8362934 8363131 -209674027 - MER5C DNA MER1_type -47 277 52 1723 186 3 0 chr3 8363437 8363733 -209673425 - AluJo SINE Alu -11 301 5 301 268 86 86 chr3 8364182 8364391 -209672767 - L1ME3A LINE L1 -283 5887 5679 355 294 73 23 chr3 8364448 8364737 -209672421 - L1ME3A LINE L1 -584 5582 5271 334 284 35 103 chr3 8366266 8366498 -209670660 - L3 LINE CR1 -518 1059 844 192 363 55 11 chr3 8366661 8366752 -209670406 - L3 LINE CR1 -11 1566 1472 201 264 114 36 chr3 8366838 8366978 -209670180 + MIR SINE MIR 46 196 -66 2002 108 0 81 chr3 8367208 8367542 -209669616 + AluSx SINE Alu 1 307 -5 395 250 167 14 chr3 8368057 8368201 -209668957 + MER5A DNA MER1_type 4 169 -20 198 375 0 0 chr3 8368227 8368299 -209668859 - MER5B DNA MER1_type -60 118 47 294 388 50 0 chr3 8369153 8369313 -209667845 - MIR3 SINE MIR -1 207 40 211 356 46 11 chr3 8369320 8369407 -209667751 + L2 LINE L2 2443 2532 -782 336 235 118 78 chr3 8369439 8369643 -209667515 + L2 LINE L2 2833 3044 -228 440 200 12 0 chr3 8369783 8369868 -209667290 + MER94 DNA DNA 1 86 -48 860 144 51 20 chr3 8370099 8370294 -209666864 + L1MA5 LINE L1 6100 6300 0 48 18 0 0 chr3 8370297 8370352 -209666806 + AT_rich Low_complexity Low_complexity 1 55 0 301 230 23 46 chr3 8371048 8371135 -209666023 + MER112 DNA MER1_type 1 85 -175 189 250 0 0 chr3 8371137 8371197 -209665961 + (CATA)n Simple_repeat Simple_repeat 1 60 0 182 355 47 12 chr3 8371390 8371562 -209665596 - L2 LINE L2 -1108 2206 2029 225 287 126 35 chr3 8371633 8371720 -209665438 + L2 LINE L2 3193 3287 -26 2061 223 123 55 chr3 8371915 8372658 -209664500 + LTR50 LTR ERVL 1 793 -2 4590 86 12 80 chr3 8372831 8373481 -209663677 + L1PB1 LINE L1 5193 5776 -375 189 0 0 0 chr3 8373481 8373502 -209663656 + (CA)n Simple_repeat Simple_repeat 1 21 0 4590 86 12 80 chr3 8373502 8373700 -209663458 + L1PB1 LINE L1 5776 5986 -165 825 293 26 7 chr3 8373708 8374015 -209663143 + L1M4 LINE L1 2272 2584 -3562 5312 142 17 5 chr3 8374068 8375062 -209662096 + L1PA16 LINE L1 5128 6133 -33 3261 138 24 29 chr3 8375202 8375791 -209661367 - LTR60 LTR ERV1 0 586 1 273 184 126 0 chr3 8375853 8375956 -209661202 + HAL1b LINE L1 746 861 -487 2699 16 3 3 chr3 8376185 8376490 -209660668 + AluY SINE Alu 1 305 -6 490 253 123 0 chr3 8376596 8376750 -209660408 + MLT1F1 LTR MaLR 9 181 -386 1181 153 18 35 chr3 8376795 8376808 -209660350 - Tigger1 DNA MER2_type -1 2417 2405 3070 103 41 0 chr3 8376808 8377243 -209659915 + MLT2A2 LTR ERVL 1 453 0 1181 153 18 35 chr3 8377243 8377457 -209659701 - Tigger1 DNA MER2_type -13 2405 2194 320 296 0 0 chr3 8377497 8377595 -209659563 + L1M4 LINE L1 2592 2689 -3457 560 258 85 25 chr3 8377610 8378045 -209659113 - L1MEc LINE L1 -3923 2473 2013 461 233 85 51 chr3 8378197 8378373 -209658785 - MLT1K LTR MaLR -34 554 373 24 0 0 0 chr3 8378395 8378419 -209658739 + AT_rich Low_complexity Low_complexity 1 24 0 2096 203 21 77 chr3 8378423 8378994 -209658164 - LTR8 LTR ERV1 0 691 153 5167 132 24 5 chr3 8379016 8380206 -209656952 - L1PA16 LINE L1 -11 6155 4981 1786 112 73 0 chr3 8380207 8380493 -209656665 - LTR49 LTR ERV1 -288 307 1 391 250 85 51 chr3 8380775 8380951 -209656207 + MLT1K LTR MaLR 373 554 -34 351 243 29 10 chr3 8382803 8382906 -209654252 + MER103 DNA DNA 55 159 -7 290 316 51 0 chr3 8383601 8383680 -209653478 + MIR SINE MIR 44 126 -82 350 231 51 0 chr3 8383931 8384009 -209653149 - MIR SINE MIR -16 246 165 209 278 122 11 chr3 8384555 8384645 -209652513 - L2 LINE L2 -35 3237 3138 12783 151 35 14 chr3 8384783 8386985 -209650173 + Tigger4(Zombi) DNA MER2_type 1 2248 -483 43730 35 9 3 chr3 8386985 8393100 -209644058 - L1PA3 LINE L1 -5 6150 7 2690 115 33 102 chr3 8393100 8393647 -209643511 + Tigger4(Zombi) DNA MER2_type 2222 2730 -1 326 348 11 50 chr3 8393740 8393936 -209643222 + MIR SINE MIR 1 191 -17 204 125 0 0 chr3 8394693 8394725 -209642433 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1893 217 24 78 chr3 8395045 8395580 -209641578 - MLT2B3 LTR ERVL -48 506 1 1274 158 74 74 chr3 8395790 8396088 -209641070 + AluJb SINE Alu 1 298 -14 2448 86 0 0 chr3 8396180 8396482 -209640676 + AluY SINE Alu 1 302 -9 582 194 37 0 chr3 8396999 8397107 -209640051 - MLT2B3 LTR ERVL -72 482 371 358 82 0 0 chr3 8397179 8397228 -209639930 - MLT2B1 LTR ERVL 0 520 472 208 266 16 16 chr3 8397238 8397302 -209639856 + L2 LINE L2 3246 3309 -4 250 309 53 63 chr3 8397982 8398189 -209638969 - L2 LINE L2 0 3313 3109 357 331 105 6 chr3 8398222 8398403 -209638755 - L2 LINE L2 -358 2956 2758 2528 292 105 117 chr3 8398413 8399519 -209637639 - L2 LINE L2 -840 2474 1356 780 223 50 59 chr3 8399519 8399739 -209637419 - MER58A DNA MER1_type -1 223 6 2528 292 105 117 chr3 8399739 8399777 -209637381 - L2 LINE L2 -1958 1356 1319 1595 213 45 8 chr3 8399777 8400129 -209637029 + MLT1A1 LTR MaLR 1 365 0 2528 292 105 117 chr3 8400129 8401241 -209635917 - L2 LINE L2 -1995 1319 28 325 286 0 0 chr3 8401875 8401959 -209635199 + MER94 DNA DNA 5 88 -46 1321 343 40 17 chr3 8403019 8403593 -209633565 + L1PA16 LINE L1 788 1374 -6200 313 246 127 18 chr3 8403649 8403759 -209633399 + L1PA16 LINE L1 2176 2297 -5277 282 346 0 0 chr3 8403738 8403816 -209633342 + L1PA16 LINE L1 2104 2181 -5400 * 13008 231 29 16 chr3 8404475 8409816 -209627342 + L1PA16 LINE L1 2225 7602 -2 713 296 83 53 chr3 8409913 8410288 -209626870 + MLT1I LTR MaLR 4 389 -20 542 168 16 16 chr3 8410370 8410495 -209626663 + L1MA10 LINE L1 6209 6333 -1 279 0 0 0 chr3 8410859 8410890 -209626268 + (CA)n Simple_repeat Simple_repeat 2 32 0 2008 173 11 6 chr3 8410947 8411300 -209625858 - THE1A LTR MaLR 0 355 1 11203 103 17 2 chr3 8411300 8412856 -209624302 - THE1A-int LTR MaLR 0 1580 2 2202 138 23 6 chr3 8412857 8413206 -209623952 - THE1A LTR MaLR 0 355 1 261 370 55 0 chr3 8413506 8413652 -209623506 - MIR3 SINE MIR -1 207 54 264 215 15 31 chr3 8414819 8414884 -209622274 - L1PB4 LINE L1 -90 6066 6003 27 49 0 0 chr3 8414903 8414944 -209622214 + AT_rich Low_complexity Low_complexity 1 41 0 2466 62 0 10 chr3 8415312 8415621 -209621537 + AluY SINE Alu 1 306 -5 395 252 72 29 chr3 8416301 8416440 -209620718 - L1PB4 LINE L1 0 6156 6012 883 135 10 91 chr3 8417023 8417231 -209619927 - L1MA10 LINE L1 -2 6332 6142 3998 189 52 26 chr3 8417238 8418903 -209618255 - L1MB1 LINE L1 -135 6033 4316 221 130 43 58 chr3 8419548 8419617 -209617541 + (TATAG)n Simple_repeat Simple_repeat 3 70 0 28 29 0 0 chr3 8420840 8420875 -209616283 + AT_rich Low_complexity Low_complexity 1 35 0 196 29 29 29 chr3 8421768 8421802 -209615356 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr3 8422350 8422373 -209614785 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 8422408 8422429 -209614729 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr3 8422530 8422589 -209614569 + AT_rich Low_complexity Low_complexity 1 59 0 263 125 42 52 chr3 8422631 8422727 -209614431 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 216 387 42 17 chr3 8422806 8422925 -209614233 + MER5A DNA MER1_type 68 189 0 280 368 114 14 chr3 8422965 8423185 -209613973 + L2 LINE L2 2805 3046 -226 353 326 19 49 chr3 8423204 8423441 -209613717 - MIR SINE MIR 0 262 35 11474 203 55 25 chr3 8423462 8427002 -209610156 + L1PA16 LINE L1 806 4240 -2629 6975 61 26 1 chr3 8427002 8427877 -209609281 - MER11D LTR ERVK 0 897 1 11474 203 55 25 chr3 8427877 8428396 -209608762 + L1PA16 LINE L1 4240 4742 -2127 234 0 0 0 chr3 8428396 8428422 -209608736 + (CA)n Simple_repeat Simple_repeat 1 26 0 11474 203 55 25 chr3 8428422 8430170 -209606988 + L1PA16 LINE L1 4742 6860 -9 21 0 0 0 chr3 8430174 8430195 -209606963 + AT_rich Low_complexity Low_complexity 1 21 0 371 322 11 72 chr3 8431695 8431875 -209605283 + MIR SINE MIR 23 191 -71 254 203 0 38 chr3 8431978 8432057 -209605101 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 1524 237 68 45 chr3 8432213 8432982 -209604176 + Charlie7 DNA MER1_type 1723 2508 -104 1751 211 35 28 chr3 8433226 8433685 -209603473 - MLT1C LTR MaLR 0 467 6 506 241 165 24 chr3 8435874 8436086 -209601072 + MIR SINE MIR 21 262 0 1926 128 10 7 chr3 8436199 8436495 -209600663 - AluSp SINE Alu -16 297 1 21 0 0 0 chr3 8436601 8436622 -209600536 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 0 chr3 8436679 8436753 -209600405 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 477 328 102 11 chr3 8437566 8437743 -209599415 + MIR SINE MIR 6 198 -64 4207 45 0 0 chr3 8437860 8438390 -209598768 - L1P LINE L1 -2438 3708 3179 2908 23 0 0 chr3 8438383 8438727 -209598431 + L1P LINE L1 3708 4051 -2095 * 226 65 0 0 chr3 8438721 8438752 -209598406 - L1P LINE L1 -2937 3209 3179 * 1256 21 0 0 chr3 8438749 8438894 -209598264 + L1PA3 LINE L1 3712 3856 -2290 11275 24 6 0 chr3 8438894 8440981 -209596177 + L1PA3 LINE L1 4061 6152 -3 21 0 0 0 chr3 8440981 8441002 -209596156 + AT_rich Low_complexity Low_complexity 1 21 0 290 327 63 25 chr3 8441432 8441591 -209595567 + MIR3 SINE MIR 35 199 -9 2040 118 6 43 chr3 8441701 8442023 -209595135 + AluSg SINE Alu 1 310 0 1936 194 24 5 chr3 8442047 8442424 -209594734 - MER44D DNA MER2_type -166 439 1 342 288 149 40 chr3 8443197 8443419 -209593739 - MIR SINE MIR -13 249 4 2359 64 0 10 chr3 8443606 8443901 -209593257 + AluY SINE Alu 1 292 -19 32 43 0 0 chr3 8444802 8444848 -209592310 + AT_rich Low_complexity Low_complexity 1 46 0 369 342 103 40 chr3 8445512 8445784 -209591374 - L3 LINE CR1 -17 1560 1272 189 308 202 30 chr3 8446294 8446492 -209590666 - L3 LINE CR1 -910 667 436 791 299 33 11 chr3 8446912 8447297 -209589861 + LTR16A LTR ERVL 16 450 0 574 105 0 12 chr3 8447926 8448012 -209589146 - AluSg/x SINE Alu -13 296 212 212 322 98 49 chr3 8448193 8448336 -209588822 + MIR SINE MIR 34 183 -79 29 0 0 0 chr3 8448427 8448456 -209588702 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr3 8449598 8449664 -209587494 + AT_rich Low_complexity Low_complexity 1 66 0 241 111 86 19 chr3 8449676 8449838 -209587320 + (TA)n Simple_repeat Simple_repeat 1 173 0 25 31 0 0 chr3 8449838 8449870 -209587288 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr3 8449960 8450002 -209587156 + AT_rich Low_complexity Low_complexity 1 42 0 2448 122 28 0 chr3 8450538 8450891 -209586267 + THE1B LTR MaLR 1 363 -1 11406 100 4 5 chr3 8450892 8451383 -209585775 + THE1B-int LTR MaLR 1 491 -1089 2201 100 0 28 chr3 8451383 8451703 -209585455 + AluSx SINE Alu 1 311 -1 11406 100 4 5 chr3 8451703 8452792 -209584366 + THE1B-int LTR MaLR 491 1580 0 2160 149 36 14 chr3 8452792 8453148 -209584010 + THE1B LTR MaLR 1 364 0 27 49 0 0 chr3 8453332 8453373 -209583785 + AT_rich Low_complexity Low_complexity 1 41 0 208 139 0 0 chr3 8453896 8453932 -209583226 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 315 411 60 31 chr3 8453996 8454553 -209582605 - L2 LINE L2 -1 3271 2703 677 223 71 62 chr3 8454741 8454952 -209582206 - MER20 DNA MER1_type -5 214 2 471 254 30 45 chr3 8455307 8455441 -209581717 - L2 LINE L2 0 3313 3182 267 403 56 7 chr3 8455436 8455580 -209581578 - MER5A DNA MER1_type -38 151 1 * 299 243 19 0 chr3 8455665 8455753 -209581405 + (TA)n Simple_repeat Simple_repeat 2 94 -12 270 81 0 0 chr3 8455753 8455790 -209581368 + (CA)n Simple_repeat Simple_repeat 2 38 0 299 243 19 0 chr3 8455790 8455804 -209581354 + (TA)n Simple_repeat Simple_repeat 94 106 0 254 289 242 7 chr3 8456321 8456470 -209580688 - MER5A DNA MER1_type 0 189 6 413 231 172 11 chr3 8456614 8456800 -209580358 - L1MC/D LINE L1 -2336 5472 5257 489 264 83 7 chr3 8457070 8457346 -209579812 - MER113 DNA MER1_type? -213 308 12 279 299 0 11 chr3 8457534 8457621 -209579537 + GA-rich Low_complexity Low_complexity 2 87 0 2161 91 31 0 chr3 8457780 8458066 -209579092 - AluSg SINE Alu -15 295 1 468 276 61 33 chr3 8458101 8458282 -209578876 - MIR SINE MIR -61 201 16 21 57 0 0 chr3 8458924 8458959 -209578199 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr3 8459141 8459161 -209577997 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 807 204 65 27 chr3 8459177 8459363 -209577795 - AluJo SINE Alu -78 234 42 276 236 16 49 chr3 8459578 8459701 -209577457 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 223 241 7 51 chr3 8459648 8459785 -209577373 + (TTTA)n Simple_repeat Simple_repeat 4 134 0 * 265 321 71 36 chr3 8459785 8459897 -209577261 - MIR SINE MIR -116 146 31 308 333 84 33 chr3 8460181 8460394 -209576764 - MIR SINE MIR -31 231 8 2373 35 42 0 chr3 8460508 8460795 -209576363 + AluY SINE Alu 1 299 -12 43808 43 7 0 chr3 8460887 8467003 -209570155 + L1PA3 LINE L1 1 6152 -3 246 174 0 0 chr3 8467953 8467999 -209569159 + (TATG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr3 8468066 8468088 -209569070 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 345 47 0 0 chr3 8468087 8468130 -209569028 + (TA)n Simple_repeat Simple_repeat 1 43 0 2387 207 31 66 chr3 8468295 8468869 -209568289 - MLT2B3 LTR ERVL 0 554 1 765 249 42 73 chr3 8469659 8469920 -209567238 - MIR SINE MIR -4 258 6 24 77 0 0 chr3 8470998 8471050 -209566108 + AT_rich Low_complexity Low_complexity 1 52 0 193 322 119 25 chr3 8471244 8471362 -209565796 + L2 LINE L2 3180 3308 -5 466 72 14 0 chr3 8471370 8471439 -209565719 + L1MB1 LINE L1 6098 6167 -1 683 317 20 37 chr3 8472275 8472521 -209564637 + MIR SINE MIR 16 257 -5 222 37 0 0 chr3 8472921 8472948 -209564210 + (CATTT)n Simple_repeat Simple_repeat 4 30 0 2150 116 0 0 chr3 8472948 8473232 -209563926 - AluSx SINE Alu -28 284 1 22 0 0 0 chr3 8473234 8473256 -209563902 + AT_rich Low_complexity Low_complexity 1 22 0 285 274 144 14 chr3 8474032 8474178 -209562980 - MIR SINE MIR 0 262 98 1107 268 155 9 chr3 8474549 8475004 -209562154 - MLT1F1 LTR MaLR -40 527 1 2394 157 36 19 chr3 8475763 8476184 -209560974 - MSTC LTR MaLR 0 428 1 288 0 0 0 chr3 8476757 8476789 -209560369 + (T)n Simple_repeat Simple_repeat 1 32 0 524 289 88 21 chr3 8477492 8477731 -209559427 - MLT1L LTR MaLR -211 404 150 1824 156 3 0 chr3 8477937 8478220 -209558938 + AluSg SINE Alu 27 310 0 209 235 0 12 chr3 8478710 8478791 -209558367 + CT-rich Low_complexity Low_complexity 3 82 0 259 292 39 15 chr3 8478868 8478998 -209558160 + LTR67 LTR ERVL 411 543 -14 1731 134 4 19 chr3 8479436 8479704 -209557454 + AluY SINE Alu 43 306 -5 193 239 0 22 chr3 8480866 8480912 -209556246 + L2 LINE L2 3267 3311 -2 4948 191 19 14 chr3 8481074 8481371 -209555787 + L1PA16 LINE L1 4125 4419 -1747 2238 116 3 0 chr3 8481371 8481682 -209555476 - AluSx SINE Alu 0 312 1 4948 191 19 14 chr3 8481682 8482864 -209554294 + L1PA16 LINE L1 4419 5607 -559 1522 103 4 0 chr3 8482863 8483096 -209554062 - L1PA8 LINE L1 -1642 4504 4271 * 6395 101 1 1 chr3 8483096 8483749 -209553409 + L1PA8 LINE L1 4522 5174 -998 337 48 0 48 chr3 8483749 8483811 -209553347 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6395 101 1 1 chr3 8483811 8484803 -209552355 + L1PA8 LINE L1 5173 6172 0 2664 154 0 0 chr3 8484805 8485227 -209551931 + L1PA16 LINE L1 5601 6022 -144 972 96 7 0 chr3 8485282 8485417 -209551741 + L1PA16 LINE L1 6022 6157 -9 359 310 37 61 chr3 8486093 8486338 -209550820 - MIR SINE MIR 0 262 24 204 292 0 0 chr3 8486786 8486834 -209550324 + L2 LINE L2 2679 2726 -588 1521 241 34 0 chr3 8486865 8487218 -209549940 + MLT1A1 LTR MaLR 1 365 0 2410 284 159 40 chr3 8487283 8488460 -209548698 - L2 LINE L2 -339 2975 1622 2113 126 0 0 chr3 8488460 8488754 -209548404 + AluSx SINE Alu 1 294 -18 2410 284 159 40 chr3 8488754 8488894 -209548264 - L2 LINE L2 -1692 1622 1500 306 337 11 0 chr3 8488952 8489047 -209548111 + L2 LINE L2 3168 3263 -9 216 0 0 0 chr3 8489758 8489782 -209547376 + (CA)n Simple_repeat Simple_repeat 2 25 0 6476 153 39 18 chr3 8490099 8490364 -209546794 - Tigger3b DNA MER2_type -1797 1231 973 3538 144 0 0 chr3 8490364 8490886 -209546272 + MER1A DNA MER1_type 2 523 -4 6476 153 39 18 chr3 8490886 8491823 -209545335 - Tigger3b DNA MER2_type -2055 973 4 268 284 28 6 chr3 8492262 8492438 -209544720 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 0 0 0 chr3 8492885 8492914 -209544244 + AT_rich Low_complexity Low_complexity 1 29 0 4724 51 0 0 chr3 8493148 8493718 -209543440 + L1PA5 LINE L1 5572 6141 -13 229 208 0 21 chr3 8494748 8494796 -209542362 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 264 10 101 chr3 8494895 8495103 -209542055 + MIR SINE MIR 61 249 -13 501 263 157 80 chr3 8495599 8496013 -209541145 - MLT1H LTR MaLR 0 549 104 2029 155 0 0 chr3 8497084 8497388 -209539770 + AluSx SINE Alu 1 304 -8 639 240 84 0 chr3 8497393 8497547 -209539611 - MER96 DNA MER1_type? -7 168 2 565 269 92 50 chr3 8497793 8498031 -209539127 + MIR SINE MIR 15 262 0 527 165 12 0 chr3 8498132 8498217 -209538941 + HUERS-P3 LTR ERV1 8830 8915 -4 2591 197 55 8 chr3 8498225 8498754 -209538404 + LTR9B LTR ERV1 7 560 -84 207 0 0 0 chr3 8498754 8498777 -209538381 + (A)n Simple_repeat Simple_repeat 1 23 0 23 78 0 0 chr3 8498976 8499027 -209538131 + AT_rich Low_complexity Low_complexity 1 51 0 1614 163 0 0 chr3 8499898 8500150 -209537008 - AluJb SINE Alu -60 252 1 283 363 88 18 chr3 8500193 8500419 -209536739 + MIR SINE MIR 4 245 -17 329 271 211 31 chr3 8500598 8500940 -209536218 - L2 LINE L2 -181 3091 2690 1414 191 3 53 chr3 8501869 8502151 -209535007 + Tigger7 DNA MER2_type 1 268 -2219 517 178 0 11 chr3 8502153 8502243 -209534915 + Tigger7 DNA MER2_type 2399 2487 -4 183 371 81 32 chr3 8502314 8502438 -209534720 - L2 LINE L2 -20 3252 3123 291 357 68 61 chr3 8502762 8503336 -209533822 - L2 LINE L2 -339 2975 2398 2112 174 22 25 chr3 8503340 8503788 -209533370 + L1MC2 LINE L1 5890 6336 -8 443 297 30 36 chr3 8503843 8504008 -209533150 - L2 LINE L2 -1286 2028 1865 1880 301 28 0 chr3 8504673 8505349 -209531809 + L1MEc LINE L1 40 771 -5625 316 314 51 0 chr3 8505588 8505706 -209531452 + MER5C DNA MER1_type 1 124 -200 246 150 117 0 chr3 8505828 8505888 -209531270 + MER5C DNA MER1_type 257 323 -1 213 39 0 0 chr3 8506444 8506470 -209530688 + (T)n Simple_repeat Simple_repeat 1 26 0 2171 125 0 0 chr3 8507504 8507807 -209529351 - AluSx SINE Alu -9 303 1 2496 87 0 0 chr3 8508035 8508346 -209528812 - AluY SINE Alu 0 311 1 255 288 89 31 chr3 8509052 8509125 -209528033 - MLT1J1 LTR MaLR -184 262 195 226 0 59 0 chr3 8509125 8509159 -209527999 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3345 90 25 0 chr3 8509161 8509607 -209527551 - LTR22A LTR ERVK 0 458 2 255 288 89 31 chr3 8509607 8509721 -209527437 - MLT1J1 LTR MaLR -251 195 61 1034 226 5 5 chr3 8512275 8512479 -209524679 - MER20 DNA MER1_type 0 219 16 351 292 60 43 chr3 8513376 8513561 -209523597 + MLT1K LTR MaLR 399 586 -2 261 150 100 25 chr3 8514883 8514963 -209522195 - L1M4 LINE L1 -1436 4710 4625 433 301 20 7 chr3 8515239 8515392 -209521766 - HERVL LTR ERVL -4025 1629 1475 388 317 40 71 chr3 8515773 8516098 -209521060 - HERVL LTR ERVL -4618 1036 722 1332 298 90 7 chr3 8516660 8517103 -209520055 - MLT2E LTR ERVL -7 621 142 342 349 40 20 chr3 8517259 8517408 -209519750 + MIR SINE MIR 11 162 -100 521 261 25 6 chr3 8517409 8517570 -209519588 + L1MCa LINE L1 156 319 -6245 3247 53 24 40 chr3 8517653 8518108 -209519050 + LTR7 LTR ERV1 1 448 -2 20674 82 9 27 chr3 8518110 8521150 -209516008 + HERVH LTR ERV1 1 2987 -4726 911 135 20 0 chr3 8521144 8521292 -209515866 + HERVH LTR ERV1 3140 3290 -4423 * 3135 133 4 6 chr3 8521282 8521785 -209515373 + HERVH LTR ERV1 3492 3993 -3720 10578 60 7 3 chr3 8521787 8523143 -209514015 + HERVH LTR ERV1 4488 5848 -1865 289 233 101 39 chr3 8523180 8523309 -209513849 + L1MCa LINE L1 744 880 -5165 1918 105 94 0 chr3 8523320 8523597 -209513561 + AluY SINE Alu 1 303 -8 3624 247 59 51 chr3 8523602 8523811 -209513347 + L1MCa LINE L1 969 1175 -5389 2471 76 0 13 chr3 8523811 8524126 -209513032 + AluY SINE Alu 1 311 0 3624 247 59 51 chr3 8524126 8527025 -209510133 + L1MCa LINE L1 1175 4289 -2275 257 231 0 0 chr3 8527028 8527080 -209510078 + LTR30 LTR ERV1 1 52 -670 1162 165 134 27 chr3 8527080 8527341 -209509817 + pTR5 LTR ERV1 1395 1683 -755 1332 191 52 30 chr3 8527353 8527682 -209509476 + L1MC2 LINE L1 5999 6334 -10 186 103 0 0 chr3 8527810 8527839 -209509319 + (TTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr3 8528743 8528773 -209508385 + AT_rich Low_complexity Low_complexity 1 30 0 334 63 0 127 chr3 8529646 8529709 -209507449 - MLT2D LTR ERVL -11 403 349 7734 61 4 0 chr3 8529830 8530839 -209506319 + L1P LINE L1 4391 5403 -743 1860 166 63 23 chr3 8530850 8531200 -209505958 - MLT2D LTR ERVL -50 364 1 209 336 25 8 chr3 8531202 8531324 -209505834 + MIR SINE MIR 139 262 0 25 51 0 0 chr3 8532089 8532128 -209505030 + AT_rich Low_complexity Low_complexity 1 39 0 2161 181 60 2 chr3 8532525 8532961 -209504197 + LOR1b LTR ERV1 1 461 0 21 0 0 0 chr3 8533139 8533160 -209503998 + AT_rich Low_complexity Low_complexity 1 21 0 236 239 90 15 chr3 8534000 8534067 -209503091 + MIR SINE MIR 68 139 -123 608 293 54 16 chr3 8534424 8534666 -209502492 - MIR SINE MIR -6 256 6 602 249 106 67 chr3 8534740 8535208 -209501950 + MLT1H LTR MaLR 29 549 0 346 198 86 43 chr3 8535230 8535346 -209501812 - L1ME4a LINE L1 -1 6120 6000 234 244 0 0 chr3 8535373 8535418 -209501740 - MIR SINE MIR -23 239 195 454 329 87 0 chr3 8535658 8535819 -209501339 - MIR SINE MIR -87 175 1 639 213 0 8 chr3 8536090 8536212 -209500946 + FLAM_A SINE Alu 5 125 -8 321 208 83 104 chr3 8537468 8537531 -209499627 + MER5B DNA MER1_type 1 64 -114 2301 119 0 0 chr3 8537531 8537843 -209499315 + AluSx SINE Alu 1 312 0 321 208 83 104 chr3 8537843 8537923 -209499235 + MER5B DNA MER1_type 64 141 -37 490 296 88 39 chr3 8538111 8538371 -209498787 + MLT1L LTR MaLR 123 395 -220 308 273 76 8 chr3 8538417 8538549 -209498609 + MLT1L LTR MaLR 466 606 -9 22 0 0 0 chr3 8539025 8539047 -209498111 + AT_rich Low_complexity Low_complexity 1 22 0 434 235 0 12 chr3 8539178 8539263 -209497895 + L2 LINE L2 3230 3313 0 186 268 155 0 chr3 8539640 8539711 -209497447 - L2 LINE L2 -10 3303 3222 625 309 18 0 chr3 8540197 8540365 -209496793 - MER5B DNA MER1_type 0 178 8 27 0 0 0 chr3 8540725 8540752 -209496406 + AT_rich Low_complexity Low_complexity 1 27 0 305 194 60 0 chr3 8541457 8541524 -209495634 - MER58 DNA MER1_type -13 2407 2337 632 259 115 8 chr3 8542404 8542647 -209494511 + MER5C DNA MER1_type 1 269 -55 3371 111 31 0 chr3 8542811 8543287 -209493871 + PABL_A LTR ERV1 1 491 -169 2087 112 36 91 chr3 8543287 8543491 -209493667 - THE1B LTR MaLR -1 363 188 2197 131 0 0 chr3 8543491 8543803 -209493355 - AluSx SINE Alu 0 312 1 2087 112 36 91 chr3 8543803 8543982 -209493176 - THE1B LTR MaLR -176 188 1 11336 101 12 3 chr3 8543982 8545548 -209491610 - THE1B-int LTR MaLR 0 1580 1 2239 138 8 24 chr3 8545548 8545918 -209491240 - THE1B LTR MaLR 0 364 1 1222 87 29 6 chr3 8545918 8546090 -209491068 + PABL_A LTR ERV1 485 660 0 274 241 72 0 chr3 8546129 8546212 -209490946 - MIR SINE MIR -70 192 104 487 236 26 47 chr3 8546212 8546349 -209490809 - LTR37B LTR ERV1 0 468 335 4072 122 19 2 chr3 8546349 8546973 -209490185 - MER41B LTR ERV1 0 635 1 487 236 26 47 chr3 8546973 8547026 -209490132 - LTR37B LTR ERV1 -133 335 282 796 164 111 58 chr3 8547058 8547247 -209489911 + MER93b LTR ERV1 27 225 -148 1807 194 83 35 chr3 8547445 8548072 -209489086 + MER39 LTR ERV1 8 707 0 637 219 60 23 chr3 8548081 8548298 -209488860 - MER39 LTR ERV1 -436 271 6 347 56 42 14 chr3 8548504 8548576 -209488582 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 7568 30 0 0 chr3 8548576 8549472 -209487686 - L1PA3 LINE L1 -6 6149 5254 514 264 21 0 chr3 8549481 8549621 -209487537 + MIR SINE MIR 86 228 -34 468 220 83 15 chr3 8551866 8551998 -209485160 - MER104 DNA Tc2 -18 162 22 38 0 0 0 chr3 8552147 8552185 -209484973 + AT_rich Low_complexity Low_complexity 1 38 0 277 357 41 12 chr3 8552379 8552550 -209484608 + MLT1K LTR MaLR 144 319 -269 561 113 0 0 chr3 8552634 8552714 -209484444 + AluS SINE Alu 1 80 -233 2027 128 38 0 chr3 8552716 8553005 -209484153 + AluSq SINE Alu 14 313 0 309 262 99 29 chr3 8553006 8553178 -209483980 + MLT1K LTR MaLR 405 588 0 202 326 78 54 chr3 8553263 8553392 -209483766 + L2 LINE L2 3182 3313 0 186 333 0 48 chr3 8553580 8553643 -209483515 + L2 LINE L2 3200 3259 -13 1630 113 254 29 chr3 8554322 8554668 -209482490 - MSTA LTR MaLR -2 426 3 306 344 76 18 chr3 8555422 8555646 -209481512 - MIR SINE MIR -14 248 12 340 318 40 27 chr3 8556422 8556570 -209480588 - MIR SINE MIR -12 250 101 195 431 29 0 chr3 8556694 8556796 -209480362 - MIR SINE MIR -97 165 61 455 0 18 0 chr3 8558123 8558178 -209478980 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 248 330 40 10 chr3 8558189 8558289 -209478869 + L2 LINE L2 3210 3312 -1 527 260 130 6 chr3 8558567 8558736 -209478422 - L3 LINE CR1 -76 1501 1312 1986 224 41 64 chr3 8560284 8560850 -209476308 + MLT2B3 LTR ERVL 2 554 0 230 224 15 15 chr3 8561901 8561968 -209475190 + (TA)n Simple_repeat Simple_repeat 1 67 0 717 252 13 8 chr3 8561968 8562129 -209475029 - MIR SINE MIR -67 141 23 1361 222 11 40 chr3 8562129 8562480 -209474678 - MER58B DNA MER1_type 0 341 1 717 252 13 8 chr3 8562480 8562498 -209474660 - MIR SINE MIR -185 23 7 328 246 339 0 chr3 8562509 8562639 -209474519 + MER5A DNA MER1_type 16 189 0 413 201 132 35 chr3 8562832 8562976 -209474182 - MER103 DNA DNA -7 159 2 334 246 0 154 chr3 8563226 8563401 -209473757 + MIR SINE MIR 96 243 -19 894 224 16 0 chr3 8563488 8563680 -209473478 + MER3 DNA MER1_type 15 209 0 206 391 126 11 chr3 8564549 8564899 -209472259 + L2 LINE L2 2369 2758 -556 2271 206 57 7 chr3 8565333 8565769 -209471389 - LTR32 LTR ERVL 0 471 14 284 310 65 60 chr3 8565769 8565953 -209471205 + L2 LINE L2 3087 3271 -1 182 156 0 0 chr3 8566936 8566968 -209470190 - L2 LINE L2 -1 3271 3240 361 309 55 36 chr3 8567077 8567297 -209469861 - MLT1K LTR MaLR -2 586 363 1957 221 54 74 chr3 8567415 8568194 -209468964 - LTR28 LTR ERV1 0 1020 109 397 241 207 13 chr3 8568195 8568356 -209468802 - LTR28 LTR ERV1 -286 178 1 1285 190 146 24 chr3 8569090 8569516 -209467642 - LTR54B LTR ERV1 -2 496 19 191 263 25 38 chr3 8569672 8569752 -209467406 + L2 LINE L2 3150 3228 -44 1993 139 11 0 chr3 8569813 8570100 -209467058 + AluSq SINE Alu 1 290 -23 1094 194 18 14 chr3 8570101 8570318 -209466840 + MER20 DNA MER1_type 2 219 0 246 333 9 9 chr3 8570332 8570437 -209466721 - MIR SINE MIR -111 151 47 2134 92 26 36 chr3 8572364 8572669 -209464489 - AluSp SINE Alu -11 302 1 2102 190 19 12 chr3 8572918 8573329 -209463829 - MLT2D LTR ERVL 0 414 1 1553 155 107 0 chr3 8574051 8574340 -209462818 - AluSx SINE Alu 0 320 5 195 357 18 65 chr3 8574524 8574692 -209462466 - L2 LINE L2 -225 3047 2888 2206 99 27 0 chr3 8575531 8575823 -209461335 - AluSg1 SINE Alu -9 300 1 1768 190 116 9 chr3 8576164 8576585 -209460573 - MLT1C LTR MaLR -1 466 1 329 373 42 0 chr3 8577488 8577630 -209459528 - MIR3 SINE MIR -25 183 36 572 237 0 0 chr3 8577809 8577923 -209459235 - Charlie1 DNA MER1_type 0 2761 2648 2395 197 52 41 chr3 8577927 8578536 -209458622 - L1MB8 LINE L1 -2 6245 5630 2781 265 27 7 chr3 8578543 8579470 -209457688 - L1MB8 LINE L1 -2516 3699 2751 1805 201 18 0 chr3 8579470 8579808 -209457350 + MER2 DNA MER2_type 1 344 0 2781 265 27 7 chr3 8579808 8579842 -209457316 - L1MB8 LINE L1 -3464 2751 2719 2055 132 0 10 chr3 8579849 8580160 -209456998 - MER50 LTR ERV1 -30 704 397 1565 117 8 25 chr3 8580193 8580433 -209456725 - MER50 LTR ERV1 -498 236 1 1107 259 67 18 chr3 8580433 8581249 -209455909 - L1MB8 LINE L1 -3493 2722 1868 4553 250 63 55 chr3 8581381 8582317 -209454841 - L1M4c LINE L1 -4371 2586 1658 2530 68 0 0 chr3 8582317 8582626 -209454532 - AluY SINE Alu -2 309 1 4553 250 63 55 chr3 8582626 8583877 -209453281 - L1M4c LINE L1 -5299 1658 2 861 201 22 93 chr3 8583878 8584146 -209453012 - Charlie1 DNA MER1_type -2512 249 1 260 51 0 26 chr3 8584423 8584462 -209452696 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 182 0 0 chr3 8586065 8586109 -209451049 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 582 343 60 8 chr3 8586934 8587182 -209449976 - MIR SINE MIR -1 261 1 255 308 0 0 chr3 8587199 8587264 -209449894 + A-rich Low_complexity Low_complexity 4 68 0 315 271 134 53 chr3 8587269 8587516 -209449642 + HAL1 LINE L1 1011 1277 -1230 443 308 8 0 chr3 8587520 8587653 -209449505 + GA-rich Low_complexity Low_complexity 3 136 0 21 36 0 0 chr3 8587680 8587708 -209449450 + AT_rich Low_complexity Low_complexity 1 28 0 520 253 148 13 chr3 8587735 8587964 -209449194 + MIR SINE MIR 1 260 -2 238 330 0 0 chr3 8588864 8588952 -209448206 + (TG)n Simple_repeat Simple_repeat 1 88 0 997 206 123 83 chr3 8589197 8589547 -209447611 + MLT1A1 LTR MaLR 1 364 -1 458 298 115 34 chr3 8590053 8590288 -209446870 - MIR SINE MIR 0 262 9 2264 115 0 0 chr3 8590292 8590597 -209446561 - AluSx SINE Alu -7 305 1 2164 113 7 0 chr3 8590896 8591189 -209445969 - AluSx SINE Alu -13 299 5 2123 110 0 7 chr3 8592352 8592651 -209444507 - AluSx SINE Alu -15 297 1 225 182 0 0 chr3 8593109 8593164 -209443994 + T-rich Low_complexity Low_complexity 1 55 0 512 277 36 0 chr3 8593391 8593528 -209443630 - MER45B DNA AcHobo -786 254 113 410 268 93 22 chr3 8593700 8593883 -209443275 + MER117 DNA MER1_type 2 197 0 26 30 0 0 chr3 8595560 8595593 -209441565 + AT_rich Low_complexity Low_complexity 1 33 0 183 246 49 16 chr3 8595689 8595750 -209441408 + MIR3 SINE MIR 118 180 -28 21 36 0 0 chr3 8596754 8596782 -209440376 + AT_rich Low_complexity Low_complexity 1 28 0 302 345 48 12 chr3 8596963 8597131 -209440027 - HAL1b LINE L1 -438 910 737 2474 52 0 0 chr3 8597779 8598093 -209439065 - AluY SINE Alu 0 314 1 249 323 16 16 chr3 8598112 8598239 -209438919 - HAL1 LINE L1 -837 1670 1544 1712 126 100 0 chr3 8598513 8598782 -209438376 + AluJb SINE Alu 1 296 -16 2096 109 0 0 chr3 8598971 8599246 -209437912 - AluSc SINE Alu -18 291 17 423 274 36 48 chr3 8599503 8599671 -209437487 - L1ME3A LINE L1 -9 6161 5996 860 250 59 10 chr3 8601384 8601788 -209435370 - L1ME LINE L1 -2884 3760 3337 1624 179 188 8 chr3 8602044 8602401 -209434757 + MSTC LTR MaLR 8 428 0 777 271 163 18 chr3 8602405 8602455 -209434703 + MLT1E1 LTR MaLR 89 130 -463 3087 86 32 5 chr3 8602455 8602492 -209434666 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 8602492 8602529 -209434629 + (CA)n Simple_repeat Simple_repeat 2 38 0 3087 86 32 5 chr3 8602529 8602923 -209434235 - MLT2A1 LTR ERVL -34 410 1 777 271 163 18 chr3 8602923 8603149 -209434009 + MLT1E1 LTR MaLR 130 405 -188 800 257 6 6 chr3 8603273 8603452 -209433706 + MLT1E1 LTR MaLR 476 654 0 345 280 36 44 chr3 8603470 8603720 -209433438 - L1ME LINE L1 -3744 2900 2653 2355 92 0 3 chr3 8604321 8604627 -209432531 - AluY SINE Alu -6 305 1 242 255 38 84 chr3 8604658 8604921 -209432237 - L1ME LINE L1 -4904 1638 1516 42257 36 22 1 chr3 8604971 8610989 -209426169 - L1PA2 LINE L1 -2 6153 4 385 258 76 59 chr3 8610997 8611339 -209425819 - L1ME LINE L1 -5075 1559 1271 341 324 90 37 chr3 8612207 8612451 -209424707 - HAL1 LINE L1 -1426 1081 825 414 0 0 0 chr3 8613072 8613118 -209424040 + (TG)n Simple_repeat Simple_repeat 2 47 0 216 273 71 40 chr3 8613948 8614047 -209423111 - L2 LINE L2 -4 3309 3208 1949 123 7 3 chr3 8614363 8614686 -209422472 - AluSq SINE Alu 0 324 1 794 292 75 35 chr3 8614784 8615185 -209421973 - MLT2F LTR ERVL -10 653 237 375 285 152 19 chr3 8615199 8615462 -209421696 - MLT2F LTR ERVL -353 310 13 619 341 35 0 chr3 8615610 8615839 -209421319 + MIR SINE MIR 19 255 -7 1880 204 25 46 chr3 8616520 8617000 -209420158 - L1MA9 LINE L1 -35 6277 5808 12212 38 1 1 chr3 8617307 8619548 -209417610 + L1PA4 LINE L1 3907 6153 -2 226 386 48 24 chr3 8619589 8619884 -209417274 + L2 LINE L2 2045 2346 -968 499 295 68 91 chr3 8620173 8620655 -209416503 + L2 LINE L2 1606 2076 -1238 21 0 0 0 chr3 8621858 8621879 -209415279 + AT_rich Low_complexity Low_complexity 1 21 0 908 327 51 57 chr3 8621892 8622458 -209414700 + MLT1K LTR MaLR 10 572 -16 264 77 0 0 chr3 8623270 8623309 -209413849 + (CA)n Simple_repeat Simple_repeat 2 40 0 651 214 0 0 chr3 8623309 8623454 -209413704 + L1MA9 LINE L1 6168 6312 0 2469 69 0 0 chr3 8623718 8624021 -209413137 - AluY SINE Alu -8 303 1 213 324 14 27 chr3 8624288 8624362 -209412796 - L2 LINE L2 -9 3263 3191 4810 106 11 3 chr3 8625241 8625949 -209411209 + L1PA13 LINE L1 5448 6161 -2 230 265 119 92 chr3 8626128 8626247 -209410911 + MIR SINE MIR 48 175 -87 2279 105 3 0 chr3 8626247 8626552 -209410606 + AluY SINE Alu 1 306 -5 230 265 119 92 chr3 8626552 8626617 -209410541 + MIR SINE MIR 175 237 -25 235 289 0 0 chr3 8627219 8627295 -209409863 + L1MC/D LINE L1 5722 5797 -2011 2217 55 10 3 chr3 8627714 8628004 -209409154 - AluY SINE Alu -19 292 1 238 164 0 30 chr3 8628328 8628395 -209408763 + T-rich Low_complexity Low_complexity 4 68 0 1544 158 16 16 chr3 8631479 8631782 -209405376 - L1MA4 LINE L1 -1 6299 5997 291 93 0 0 chr3 8633226 8633269 -209403889 + (CA)n Simple_repeat Simple_repeat 2 44 0 2185 123 10 0 chr3 8633391 8633716 -209403442 - AluSc SINE Alu 0 328 1 1566 173 40 4 chr3 8633728 8634006 -209403152 - AluJb SINE Alu -24 288 1 421 319 122 55 chr3 8634367 8634606 -209402552 - L3 LINE CR1 -751 826 604 1783 207 89 20 chr3 8634606 8635113 -209402045 + MER34 LTR ERV1 1 542 0 421 319 122 55 chr3 8635113 8635261 -209401897 - L3 LINE CR1 -973 604 404 2316 60 3 33 chr3 8635261 8635563 -209401595 - AluY SINE Alu -18 293 1 421 319 122 55 chr3 8635563 8635610 -209401548 - L3 LINE CR1 -1173 404 362 219 297 90 9 chr3 8637479 8637590 -209399568 + MIR SINE MIR 58 177 -85 26 0 0 0 chr3 8638309 8638335 -209398823 + AT_rich Low_complexity Low_complexity 1 26 0 3069 98 20 2 chr3 8638810 8639248 -209397910 + LTR10B LTR ERV1 1 446 -59 1136 205 17 8 chr3 8639252 8639491 -209397667 - MLT1A1 LTR MaLR -124 241 1 5178 237 75 37 chr3 8639497 8641161 -209395997 - MLT1A1-int LTR MaLR -7 1728 2 798 170 24 5 chr3 8641163 8641463 -209395695 - MLT1A1 LTR MaLR 0 365 1 289 298 101 63 chr3 8641554 8641712 -209395446 + MIR SINE MIR 36 199 -63 372 351 93 7 chr3 8641907 8642058 -209395100 + MIR SINE MIR 82 245 -17 218 276 81 41 chr3 8644208 8644331 -209392827 - L2 LINE L2 -1 3312 3185 30 27 0 0 chr3 8644567 8644604 -209392554 + AT_rich Low_complexity Low_complexity 1 37 0 215 366 55 24 chr3 8644628 8644792 -209392366 + L3b LINE CR1 1391 1559 -24 2336 113 0 0 chr3 8646663 8646972 -209390186 + AluSx SINE Alu 1 309 -3 567 228 24 87 chr3 8647428 8647634 -209389524 - MER58C DNA MER1_type -21 194 2 320 250 0 0 chr3 8648247 8648311 -209388847 + MER45 DNA AcHobo 1518 1581 0 657 247 7 0 chr3 8648325 8648475 -209388683 - MER45A DNA AcHobo -6 172 22 27 29 0 0 chr3 8649488 8649522 -209387636 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr3 8650380 8650431 -209386727 + AT_rich Low_complexity Low_complexity 1 51 0 2164 117 23 10 chr3 8650436 8650744 -209386414 + AluSq SINE Alu 1 312 -1 303 322 67 13 chr3 8651356 8651505 -209385653 - L2 LINE L2 -213 3059 2903 1312 177 12 4 chr3 8651577 8651831 -209385327 - MER83 LTR ERV1 0 448 193 228 35 0 0 chr3 8652067 8652096 -209385062 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 299 326 112 66 chr3 8653119 8653361 -209383797 - L2 LINE L2 -16 3256 3004 713 225 0 80 chr3 8654322 8654509 -209382649 + FAM SINE Alu 2 173 -2 279 0 0 0 chr3 8654902 8654933 -209382225 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7194 77 19 0 chr3 8654944 8656701 -209380457 - L1PA7 LINE L1 -11 6143 4369 28223 108 9 70 chr3 8656701 8661994 -209375164 - L1P LINE L1 -1164 4982 12 1676 197 3 3 chr3 8662331 8662630 -209374528 - AluJb SINE Alu -13 299 1 309 319 174 7 chr3 8662691 8662829 -209374329 - MER5A DNA MER1_type -3 186 26 270 287 101 23 chr3 8663504 8663633 -209373525 - MIR SINE MIR 0 262 124 * 327 347 143 40 chr3 8663613 8664107 -209373051 + L2 LINE L2 2672 3227 -86 2172 114 7 0 chr3 8664674 8664964 -209372194 + AluSc SINE Alu 1 292 -17 288 318 143 14 chr3 8666118 8666390 -209370768 - MLT1L LTR MaLR 0 615 229 782 183 7 0 chr3 8666479 8666616 -209370542 + AluJo SINE Alu 1 138 -174 7792 18 0 0 chr3 8666667 8668030 -209369128 - L1PA2 LINE L1 0 6155 4792 3438 19 0 0 chr3 8668030 8668452 -209368706 + L1PA2 LINE L1 4369 4790 -1356 345 294 228 28 chr3 8668456 8668636 -209368522 - MIR SINE MIR -46 216 1 471 268 78 57 chr3 8669005 8669233 -209367925 - L1MC4 LINE L1 -567 7475 7234 2058 189 119 104 chr3 8669233 8670047 -209367111 + LTR1B LTR ERV1 1 826 0 471 268 78 57 chr3 8670047 8670188 -209366970 - L1MC4 LINE L1 -808 7234 7098 204 113 0 94 chr3 8670305 8670358 -209366800 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 574 306 131 33 chr3 8670457 8670947 -209366211 + L1MC4 LINE L1 7498 8035 -7 666 268 6 11 chr3 8671280 8671459 -209365699 - MER58A DNA MER1_type -22 202 25 228 393 13 20 chr3 8671518 8671668 -209365490 + L2 LINE L2 2907 3055 -217 208 205 205 26 chr3 8671856 8671934 -209365224 + L2 LINE L2 3218 3309 -4 2294 135 0 0 chr3 8672191 8672502 -209364656 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr3 8672931 8672960 -209364198 + AT_rich Low_complexity Low_complexity 1 29 0 4174 123 24 5 chr3 8673121 8673753 -209363405 + LTR9B LTR ERV1 1 644 0 30 27 0 0 chr3 8673840 8673877 -209363281 + AT_rich Low_complexity Low_complexity 1 37 0 1768 181 12 71 chr3 8675863 8676272 -209360886 - MLT1B LTR MaLR 0 390 6 414 194 0 0 chr3 8676690 8676757 -209360401 + Tigger2 DNA MER2_type 1 67 -2651 * 2585 169 11 5 chr3 8676743 8677192 -209359966 + Tigger2 DNA MER2_type 2267 2718 0 6540 147 37 36 chr3 8677850 8678447 -209358711 + Tigger3b DNA MER2_type 1 596 -2432 2232 109 0 7 chr3 8678447 8678749 -209358409 + AluSc SINE Alu 1 300 -9 6540 147 37 36 chr3 8678749 8679381 -209357777 + Tigger3b DNA MER2_type 596 1231 0 224 29 0 29 chr3 8679894 8679928 -209357230 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1299 232 30 55 chr3 8680144 8680185 -209356973 - MLT2C2 LTR ERVL -3 461 420 315 71 0 0 chr3 8680185 8680227 -209356931 + (TG)n Simple_repeat Simple_repeat 2 43 0 1299 232 30 55 chr3 8680227 8680654 -209356504 - MLT2C2 LTR ERVL -44 420 5 2527 99 17 11 chr3 8680974 8681336 -209355822 - THE1B LTR MaLR 0 364 1 2094 122 0 16 chr3 8683930 8684242 -209352916 + AluSx SINE Alu 1 307 -5 396 103 0 0 chr3 8684242 8684300 -209352858 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2344 64 3 0 chr3 8684930 8685226 -209351932 + AluY SINE Alu 1 297 -14 2085 96 24 3 chr3 8686992 8687284 -209349874 + AluSp SINE Alu 1 298 -15 23 33 0 0 chr3 8688921 8688951 -209348207 + AT_rich Low_complexity Low_complexity 1 30 0 713 293 28 23 chr3 8689282 8689497 -209347661 - MIR SINE MIR -46 216 1 2346 61 14 0 chr3 8690595 8690892 -209346266 - AluY SINE Alu -10 301 1 508 279 14 7 chr3 8690994 8691134 -209346024 - MLT1G1 LTR MaLR -440 155 15 471 344 26 31 chr3 8691179 8691374 -209345784 - MIR SINE MIR -41 221 28 406 312 70 58 chr3 8691413 8691859 -209345299 + HAL1b LINE L1 224 674 -674 27 0 0 0 chr3 8692175 8692202 -209344956 + AT_rich Low_complexity Low_complexity 1 27 0 356 285 98 87 chr3 8692327 8692487 -209344671 - L1M4 LINE L1 -1037 5109 4952 333 0 0 0 chr3 8692487 8692524 -209344634 + (TG)n Simple_repeat Simple_repeat 2 38 0 356 285 98 87 chr3 8692524 8693057 -209344101 - L1M4 LINE L1 -1194 4952 4408 2045 124 3 0 chr3 8693139 8693421 -209343737 - AluSp SINE Alu -30 283 1 21 36 0 0 chr3 8693599 8693627 -209343531 + AT_rich Low_complexity Low_complexity 1 28 0 1037 288 44 75 chr3 8694222 8694812 -209342346 + L1MC2 LINE L1 13 584 -5461 1788 161 3 17 chr3 8695417 8695716 -209341442 - AluJo SINE Alu -17 295 1 290 194 16 0 chr3 8695732 8695794 -209341364 + L1MC2 LINE L1 762 824 -5742 4416 228 90 52 chr3 8695822 8696168 -209340990 + L1M3e LINE L1 781 1112 -5451 2023 161 0 0 chr3 8696168 8696478 -209340680 + AluSx SINE Alu 1 310 -2 4416 228 90 52 chr3 8696478 8697763 -209339395 + L1M3e LINE L1 1112 2449 -4114 2599 188 27 21 chr3 8697763 8698236 -209338922 + MLT2B2 LTR ERVL 1 479 -36 261 98 0 0 chr3 8698236 8698277 -209338881 + (TG)n Simple_repeat Simple_repeat 2 42 0 2599 188 27 21 chr3 8698277 8698315 -209338843 + MLT2B2 LTR ERVL 479 515 0 4416 228 90 52 chr3 8698315 8698567 -209338591 + L1M3e LINE L1 2449 2690 -3873 1264 226 15 11 chr3 8698603 8698869 -209338289 + Tigger7 DNA MER2_type 1 267 -466 307 225 14 14 chr3 8698867 8698938 -209338220 + Tigger7 DNA MER2_type 2389 2459 -28 * 312 222 14 14 chr3 8698959 8699031 -209338127 + Tigger7 DNA MER2_type 2389 2460 -27 335 197 0 28 chr3 8699052 8699123 -209338035 + Tigger7 DNA MER2_type 2396 2464 -27 284 236 14 14 chr3 8699143 8699215 -209337943 + Tigger7 DNA MER2_type 2389 2460 -27 473 223 0 21 chr3 8699236 8699330 -209337828 + Tigger7 DNA MER2_type 2392 2483 -4 6980 233 71 54 chr3 8699332 8700238 -209336920 + L1MC2 LINE L1 2866 3756 -3006 294 29 0 0 chr3 8700238 8700273 -209336885 + (TC)n Simple_repeat Simple_repeat 2 36 0 6980 233 71 54 chr3 8700273 8701255 -209335903 + L1MC2 LINE L1 3756 4720 -2042 1255 169 4 8 chr3 8701255 8701503 -209335655 + L1MA4 LINE L1 6053 6299 -1 6980 233 71 54 chr3 8701503 8703442 -209333716 + L1MC2 LINE L1 4720 6754 -8 5451 249 73 60 chr3 8703806 8705342 -209331816 - L1M4 LINE L1 -1145 5001 3409 2107 102 0 0 chr3 8705342 8705652 -209331506 - AluSq SINE Alu 0 310 1 5451 249 73 60 chr3 8705652 8706959 -209330199 - L1M4 LINE L1 -2737 3409 2120 3720 177 31 20 chr3 8706961 8707897 -209329261 + L1PA16 LINE L1 4964 5914 -252 889 148 13 19 chr3 8707911 8708066 -209329092 + L1PA16 LINE L1 6001 6154 -12 600 249 105 30 chr3 8708077 8708390 -209328768 + L1ME LINE L1 5191 5521 -645 * 29833 56 10 3 chr3 8708359 8712956 -209324202 + L1PA5 LINE L1 1524 6153 -1 5862 196 42 37 chr3 8713715 8716073 -209321085 - L1MA7 LINE L1 -10 7700 5325 3921 240 57 26 chr3 8716056 8717172 -209319986 - L1MA7 LINE L1 -2689 4876 3687 * 2484 135 3 3 chr3 8717172 8717535 -209319623 - THE1B LTR MaLR -1 363 1 3921 240 57 26 chr3 8717535 8717935 -209319223 - L1MA7 LINE L1 -3878 3687 3301 1975 254 41 25 chr3 8718132 8718688 -209318470 - L1MA7 LINE L1 -5715 1781 1217 335 241 116 9 chr3 8719420 8719532 -209317626 + MLT1J2 LTR MaLR 324 447 -3 499 331 66 54 chr3 8719549 8720047 -209317111 - L2 LINE L2 -6 3307 2804 1579 163 0 7 chr3 8720116 8720386 -209316772 + AluJb SINE Alu 1 268 -44 204 143 0 0 chr3 8720390 8720432 -209316726 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 607 184 11 34 chr3 8720440 8720619 -209316539 + GA-rich Low_complexity Low_complexity 2 176 0 695 361 92 24 chr3 8720787 8721333 -209315825 - L2 LINE L2 -650 2664 2082 251 248 29 88 chr3 8723804 8723941 -209313217 - L1MC4 LINE L1 0 8042 7914 1010 278 59 62 chr3 8724047 8724687 -209312471 - L1MC4 LINE L1 -203 7839 7202 1544 214 31 0 chr3 8724743 8725103 -209312055 - L1MD1 LINE L1 -8 6628 6258 2815 230 15 20 chr3 8725104 8725934 -209311224 - L1MD1 LINE L1 -428 6208 5376 1377 189 20 20 chr3 8725934 8726235 -209310923 - L1MB2 LINE L1 -8 6163 5863 2815 230 15 20 chr3 8726235 8726286 -209310872 - L1MD1 LINE L1 -1260 5376 5326 189 74 0 0 chr3 8726286 8726313 -209310845 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2815 230 15 20 chr3 8726313 8726436 -209310722 - L1MD1 LINE L1 -1310 5326 5213 985 269 85 13 chr3 8726433 8727104 -209310054 - L1MD1 LINE L1 -2405 4135 3397 * 398 170 7 54 chr3 8727117 8727209 -209309949 - L1MD1 LINE L1 -3962 2578 2494 2338 88 0 3 chr3 8727209 8727515 -209309643 - AluSx SINE Alu -7 305 1 398 170 7 54 chr3 8727515 8727569 -209309589 - L1MD1 LINE L1 -4046 2494 2439 1612 229 72 105 chr3 8727619 8728199 -209308959 + MER77 LTR ERV1 41 601 -4 3268 235 170 50 chr3 8728229 8728356 -209308802 - L1MD1 LINE L1 -5137 1403 1293 1763 156 0 11 chr3 8728356 8728638 -209308520 - AluSg SINE Alu -31 279 1 3268 235 170 50 chr3 8728638 8729749 -209307409 - L1MD1 LINE L1 -5247 1293 16 303 326 11 0 chr3 8729934 8730023 -209307135 + L2 LINE L2 3199 3288 -25 316 298 109 32 chr3 8731679 8731927 -209305231 + L1ME4a LINE L1 5842 6108 -13 485 190 84 42 chr3 8732701 8732843 -209304315 + MIR SINE MIR 102 249 -13 199 263 0 0 chr3 8732891 8732929 -209304229 + L2 LINE L2 3251 3288 -25 374 139 14 0 chr3 8732938 8733010 -209304148 + (ATG)n Simple_repeat Simple_repeat 1 73 0 297 368 8 45 chr3 8733058 8733191 -209303967 + MER91A DNA MER1_type 47 174 -22 3664 125 49 16 chr3 8733523 8734155 -209303003 + MER39B LTR ERV1 1 653 0 2333 103 0 0 chr3 8734234 8734535 -209302623 - AluSc SINE Alu -8 301 1 262 304 44 44 chr3 8736018 8736153 -209301005 + MER5C DNA MER1_type 1 135 -189 224 232 0 18 chr3 8736474 8736530 -209300628 - MIR SINE MIR -25 237 183 218 308 56 19 chr3 8736806 8736913 -209300245 + MIR SINE MIR 46 156 -106 274 263 0 13 chr3 8737342 8737418 -209299740 + MIR SINE MIR 172 246 -16 189 360 101 36 chr3 8737591 8737730 -209299428 + MIR3 SINE MIR 16 163 -45 1080 148 32 0 chr3 8737971 8738160 -209298998 - Tigger4(Zombi) DNA MER2_type 0 2731 2537 1562 214 62 10 chr3 8738165 8738469 -209298689 - Tigger4(Zombi) DNA MER2_type -2410 321 2 819 189 60 78 chr3 8739713 8739930 -209297228 + MER20 DNA MER1_type 7 219 0 2319 184 19 17 chr3 8740154 8740622 -209296536 - MER39 LTR ERV1 -6 701 233 253 122 22 89 chr3 8740721 8740811 -209296347 + (ATATG)n Simple_repeat Simple_repeat 2 85 0 799 276 94 74 chr3 8741024 8741564 -209295594 + LTR1B LTR ERV1 39 589 -237 1889 206 43 5 chr3 8742405 8742803 -209294355 + MER34C LTR ERV1 172 584 -1 505 240 25 8 chr3 8742804 8742925 -209294233 + MIR SINE MIR 116 238 -24 214 343 0 0 chr3 8742933 8743003 -209294155 + MIR SINE MIR 193 262 0 1368 134 44 19 chr3 8743664 8744099 -209293059 + LTR54 LTR ERV1 2 508 -2 25 0 0 0 chr3 8744679 8744704 -209292454 + AT_rich Low_complexity Low_complexity 1 25 0 398 322 94 55 chr3 8744940 8744976 -209292182 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 8744976 8745001 -209292157 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 398 322 94 55 chr3 8745001 8745433 -209291725 - L2 LINE L2 -498 2816 2363 502 375 11 23 chr3 8745463 8745610 -209291548 - L3 LINE CR1 -473 1104 960 853 228 105 40 chr3 8745610 8746010 -209291148 + LTR37A LTR ERV1 1 426 0 502 375 11 23 chr3 8746010 8746126 -209291032 - L3 LINE CR1 -617 960 844 844 114 16 0 chr3 8746238 8746361 -209290797 + AluSp/q SINE Alu 177 301 -12 300 283 40 0 chr3 8746911 8747005 -209290153 - MER34 LTR ERV1 0 542 445 339 217 0 0 chr3 8747005 8747065 -209290093 - Tigger5 DNA MER2_type 0 2323 2264 236 213 0 98 chr3 8747086 8747147 -209290011 - Tigger5 DNA MER2_type -2268 55 1 267 146 107 117 chr3 8747147 8747234 -209289924 - LTR49 LTR ERV1 -90 505 420 2223 187 69 16 chr3 8747234 8747828 -209289330 + MER39 LTR ERV1 1 707 0 540 249 57 40 chr3 8747828 8748194 -209288964 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 8748338 8748359 -209288799 + AT_rich Low_complexity Low_complexity 1 21 0 1736 180 7 7 chr3 8748868 8749174 -209287984 + AluJo SINE Alu 1 306 -6 200 85 21 43 chr3 8750595 8750642 -209286516 + (TAA)n Simple_repeat Simple_repeat 2 47 0 630 179 15 45 chr3 8750974 8751108 -209286050 - FLAM_A SINE Alu -3 130 1 1765 232 73 13 chr3 8751292 8751887 -209285271 + MER39 LTR ERV1 1 707 0 24 53 0 0 chr3 8752153 8752191 -209284967 + AT_rich Low_complexity Low_complexity 1 38 0 2269 109 0 3 chr3 8753159 8753471 -209283687 - AluSx SINE Alu -1 311 1 622 225 55 69 chr3 8754131 8754349 -209282809 + MER58C DNA MER1_type 1 215 0 233 250 89 0 chr3 8754712 8754768 -209282390 - L2 LINE L2 -73 3240 3180 1020 206 5 0 chr3 8755357 8755561 -209281597 - MER3 DNA MER1_type -4 205 1 264 250 135 0 chr3 8755815 8755911 -209281247 - L1ME3A LINE L1 -22 6148 6040 2385 75 0 0 chr3 8757180 8757473 -209279685 + AluY SINE Alu 1 293 -18 234 0 0 0 chr3 8757792 8757818 -209279340 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 237 33 0 0 chr3 8757817 8757847 -209279311 + (GA)n Simple_repeat Simple_repeat 1 30 0 309 322 66 16 chr3 8757848 8757969 -209279189 + L2 LINE L2 3187 3313 0 3004 197 22 35 chr3 8758547 8759468 -209277690 + L1MA6 LINE L1 4654 5585 -715 2093 67 0 4 chr3 8759468 8759737 -209277421 - AluY SINE Alu -7 304 37 3004 197 22 35 chr3 8759737 8760012 -209277146 + L1MA6 LINE L1 5585 5862 -438 216 0 0 0 chr3 8760012 8760036 -209277122 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 300 27 0 0 chr3 8760035 8760072 -209277086 + (CA)n Simple_repeat Simple_repeat 1 37 0 3004 197 22 35 chr3 8760036 8760577 -209276581 + L1MA6 LINE L1 5862 6300 0 453 299 199 19 chr3 8761602 8761813 -209275345 + MIR SINE MIR 13 261 -1 222 325 136 26 chr3 8762180 8762334 -209274824 + MIR3 SINE MIR 29 199 -9 1120 245 66 23 chr3 8762785 8763132 -209274026 - MLT1A1 LTR MaLR -3 362 1 2259 110 7 0 chr3 8763598 8763907 -209273251 + AluSq SINE Alu 1 311 -2 1376 162 78 60 chr3 8763918 8764251 -209272907 - MER44D DNA MER2_type 0 609 1 1504 196 25 71 chr3 8764631 8765023 -209272135 + MLT1A2 LTR MaLR 1 374 0 1057 203 5 5 chr3 8765413 8765610 -209271548 + AluJo SINE Alu 104 300 -12 451 292 37 33 chr3 8765648 8766075 -209271083 + L1ME LINE L1 5204 5636 -534 1509 167 0 116 chr3 8766442 8766795 -209270363 + AluJo SINE Alu 1 312 0 474 242 75 17 chr3 8768007 8768127 -209269031 - L2 LINE L2 0 3313 3187 236 324 56 19 chr3 8768721 8768829 -209268329 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 8768894 8768933 -209268225 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 8769525 8769553 -209267605 + AT_rich Low_complexity Low_complexity 1 28 0 2296 104 0 0 chr3 8770353 8770651 -209266507 - AluSx SINE Alu -14 298 1 606 256 102 76 chr3 8770658 8771079 -209266079 - L1ME2 LINE L1 -1 6163 5732 388 242 40 32 chr3 8772200 8772324 -209264834 + MIR SINE MIR 94 218 -44 371 356 94 32 chr3 8772824 8773377 -209263781 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 8773885 8774283 -209262875 - MSTA LTR MaLR 0 428 1 9133 154 6 35 chr3 8774283 8775908 -209261250 - MSTA-int LTR MaLR 0 1580 3 2181 131 79 22 chr3 8775910 8776315 -209260843 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 8776999 8777042 -209260116 + (GA)n Simple_repeat Simple_repeat 2 44 0 273 314 12 12 chr3 8777099 8777185 -209259973 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 8777633 8777740 -209259418 + MIR SINE MIR 30 138 -70 193 267 133 13 chr3 8778557 8778632 -209258526 - MIR SINE MIR -11 251 168 433 224 97 30 chr3 8779053 8779290 -209257868 + HAL1b LINE L1 909 1161 -187 352 341 65 14 chr3 8780069 8780286 -209256872 - MIR SINE MIR -15 247 20 1706 219 88 17 chr3 8780338 8780725 -209256433 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 8780725 8780761 -209256397 + (CA)n Simple_repeat Simple_repeat 2 37 0 1706 219 88 17 chr3 8780761 8780794 -209256364 + MLT2C2 LTR ERVL 432 461 -3 2224 115 51 28 chr3 8781130 8781486 -209255672 - THE1B LTR MaLR 0 364 1 11219 108 4 4 chr3 8781487 8783065 -209254093 - THE1B-int LTR MaLR -1 1579 1 2200 130 0 0 chr3 8783097 8783404 -209253754 - AluSc SINE Alu -2 307 1 2048 135 51 31 chr3 8783404 8783760 -209253398 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 8783890 8783974 -209253184 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 8783974 8784479 -209252679 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 8784479 8784768 -209252390 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 8785389 8785578 -209251580 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 8786314 8786366 -209250792 + GA-rich Low_complexity Low_complexity 1 52 0 2300 158 57 0 chr3 8786577 8786982 -209250176 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 8786982 8788520 -209248638 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 8788544 8788956 -209248202 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 8789625 8789849 -209247309 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 8789939 8790010 -209247148 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 8790417 8790557 -209246601 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 8790588 8790776 -209246382 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 8790917 8791514 -209245644 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 8792442 8792717 -209244441 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 8793086 8793221 -209243937 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 8793221 8794495 -209242663 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 8794495 8794531 -209242627 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 8794561 8794704 -209242454 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 8795038 8795326 -209241832 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 8795333 8795498 -209241660 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 8796589 8796749 -209240409 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 8797991 8798343 -209238815 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 8799449 8799475 -209237683 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 8799567 8799991 -209237167 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 8800141 8800277 -209236881 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 8800989 8801299 -209235859 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 8801382 8801544 -209235614 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 8803034 8803155 -209234003 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 8803324 8803393 -209233765 + GA-rich Low_complexity Low_complexity 3 70 0 7385 32 2 2 chr3 8803687 8804877 -209232281 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 8805044 8805129 -209232029 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 8805439 8805720 -209231438 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 8806173 8806207 -209230951 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 8806222 8806265 -209230893 + (TA)n Simple_repeat Simple_repeat 2 44 0 214 244 0 0 chr3 8806387 8806428 -209230730 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 8806486 8806536 -209230622 + (TA)n Simple_repeat Simple_repeat 1 51 0 1522 174 144 17 chr3 8806817 8807178 -209229980 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 8807491 8807555 -209229603 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 8808064 8808099 -209229059 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 8808099 8808139 -209229019 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 8808139 8808491 -209228667 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 8808491 8809015 -209228143 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 8809002 8809230 -209227928 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 8809261 8809451 -209227707 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 8809455 8810312 -209226846 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 8810357 8810641 -209226517 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 8810653 8812280 -209224878 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 8812715 8813025 -209224133 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 8813795 8813889 -209223269 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 8813900 8814280 -209222878 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 8814515 8814764 -209222394 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 8815167 8815195 -209221963 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 279 0 0 0 chr3 8815256 8815287 -209221871 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1157 101 6 24 chr3 8815293 8815462 -209221696 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 8816967 8816995 -209220163 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 8817991 8818086 -209219072 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 8818570 8818597 -209218561 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 8819476 8819780 -209217378 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 8819778 8819859 -209217299 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8819857 8819938 -209217220 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8819936 8820017 -209217141 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8820015 8820096 -209217062 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8820094 8820175 -209216983 + L1PA15 LINE L1 1489 1570 -5217 * 15262 210 21 16 chr3 8820173 8824659 -209212499 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 8824659 8824953 -209212205 + AluSg SINE Alu 2 296 -14 15262 210 21 16 chr3 8824953 8825760 -209211398 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 8825784 8825830 -209211328 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 8826755 8827000 -209210158 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 8828026 8828096 -209209062 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 8828327 8829000 -209208158 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 8828993 8829385 -209207773 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 8829386 8829470 -209207688 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 8829732 8829951 -209207207 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 8830206 8830227 -209206931 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 8830906 8831042 -209206116 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 8831881 8832110 -209205048 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 8832282 8832470 -209204688 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 8832476 8832644 -209204514 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 8832606 8832779 -209204379 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 8832968 8833097 -209204061 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 8833127 8833301 -209203857 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 8833386 8833450 -209203708 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 8834395 8834423 -209202735 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 8834423 8834465 -209202693 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 8835362 8835587 -209201571 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 8835736 8835757 -209201401 + (TA)n Simple_repeat Simple_repeat 1 21 0 1761 184 7 3 chr3 8835757 8836051 -209201107 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 8836841 8837020 -209200138 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 8837419 8837446 -209199712 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 8837446 8837797 -209199361 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 8837797 8837937 -209199221 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 8838002 8838033 -209199125 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 8838104 8838285 -209198873 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 8838360 8838417 -209198741 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 8838424 8838993 -209198165 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 8838993 8839476 -209197682 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 8839476 8840574 -209196584 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 8840623 8840727 -209196431 - MER5B DNA MER1_type -71 107 7 2506 50 7 0 chr3 8840967 8841270 -209195888 + AluY SINE Alu 2 306 -5 309 179 0 0 chr3 8842245 8842291 -209194867 + (TG)n Simple_repeat Simple_repeat 2 50 -18 1974 169 31 6 chr3 8842291 8842646 -209194512 - THE1B LTR MaLR 0 364 1 309 179 0 0 chr3 8842646 8842666 -209194492 + (TG)n Simple_repeat Simple_repeat 49 68 0 247 281 0 0 chr3 8842730 8842787 -209194371 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 8844164 8844385 -209192773 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 8844816 8844851 -209192307 + AT_rich Low_complexity Low_complexity 1 35 0 2074 150 14 6 chr3 8847376 8847735 -209189423 - L1MA5 LINE L1 -478 5822 5461 2314 171 18 13 chr3 8847739 8848195 -209188963 + L1MA5 LINE L1 5843 6300 0 1004 322 29 17 chr3 8848381 8848883 -209188275 + MLT1H LTR MaLR 1 549 0 3841 175 4 4 chr3 8849288 8849990 -209187168 + L1MB1 LINE L1 5479 6180 -9 869 179 104 112 chr3 8850053 8850216 -209186942 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 8850216 8850598 -209186560 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 8850598 8850781 -209186377 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 8850811 8850885 -209186273 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 8851254 8851319 -209185839 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 8853294 8853491 -209183667 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 8853547 8853827 -209183331 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 8853827 8853854 -209183304 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2331 106 0 0 chr3 8855188 8855500 -209181658 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 8856136 8856436 -209180722 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 8856489 8856587 -209180571 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 8857530 8857640 -209179518 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 8857640 8857723 -209179435 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 8857747 8858140 -209179018 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 8858337 8858626 -209178532 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 8859587 8859836 -209177322 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 8860207 8860228 -209176930 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 8860377 8860440 -209176718 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 8861375 8861405 -209175753 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 8862153 8862284 -209174874 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 8863437 8863542 -209173616 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 8864868 8865142 -209172016 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 8865142 8865439 -209171719 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 8865439 8865481 -209171677 + L1ME4a LINE L1 5908 5949 -172 3144 167 86 28 chr3 8865481 8866168 -209170990 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 8866168 8866272 -209170886 + L1ME4a LINE L1 5949 6052 -69 429 353 108 4 chr3 8866876 8867154 -209170004 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 8867248 8868021 -209169137 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 8868392 8868470 -209168688 + AT_rich Low_complexity Low_complexity 1 78 0 415 175 0 19 chr3 8868659 8868762 -209168396 + CT-rich Low_complexity Low_complexity 2 102 0 2448 63 0 0 chr3 8869274 8869576 -209167582 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 8869971 8870271 -209166887 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 8871637 8871708 -209165450 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 8871866 8871896 -209165262 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 8872190 8872321 -209164837 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 8872235 8872341 -209164817 + MER5A DNA MER1_type 68 186 -3 * 361 302 35 35 chr3 8872371 8872487 -209164671 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 8872495 8872579 -209164579 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 8872699 8872751 -209164407 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 8874218 8874572 -209162586 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 8874703 8874738 -209162420 + AT_rich Low_complexity Low_complexity 1 35 0 5530 166 26 24 chr3 8875048 8875939 -209161219 + L1MA6 LINE L1 4422 5310 -990 1952 131 40 0 chr3 8875939 8876237 -209160921 + AluSx SINE Alu 1 310 -2 5530 166 26 24 chr3 8876237 8877020 -209160138 + L1MA6 LINE L1 5310 6090 -210 2156 103 7 3 chr3 8877020 8877311 -209159847 + AluSx SINE Alu 1 292 -20 231 114 0 0 chr3 8877311 8877346 -209159812 + (TA)n Simple_repeat Simple_repeat 1 35 0 5530 166 26 24 chr3 8877346 8877525 -209159633 + L1MA6 LINE L1 6089 6294 -6 771 314 89 14 chr3 8877540 8878024 -209159134 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 8878509 8878987 -209158171 + L1MC/D LINE L1 4168 4659 -1487 316 290 41 14 chr3 8879094 8879239 -209157919 + L1MC/D LINE L1 4804 4952 -1194 301 244 67 110 chr3 8879453 8879662 -209157496 + L1MC/D LINE L1 5259 5458 -2350 286 331 43 38 chr3 8879746 8879930 -209157228 + L1MC/D LINE L1 5574 5758 -2050 276 277 15 42 chr3 8880273 8880512 -209156646 + CT-rich Low_complexity Low_complexity 1 232 0 220 149 19 56 chr3 8880513 8880620 -209156538 + T-rich Low_complexity Low_complexity 5 107 0 6475 35 2 1 chr3 8880712 8882106 -209155052 - L1PA2 LINE L1 -156 5999 4605 358 265 29 37 chr3 8883223 8883359 -209153799 + MLT1K LTR MaLR 446 580 -8 475 244 1 22 chr3 8884477 8884587 -209152571 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 8884587 8884670 -209152488 + (TA)n Simple_repeat Simple_repeat 2 82 0 1746 224 38 33 chr3 8884694 8885087 -209152071 + MLT1E LTR MaLR 199 593 0 2022 130 0 0 chr3 8885284 8885589 -209151569 - AluSx SINE Alu 0 305 1 584 233 95 98 chr3 8885596 8886017 -209151141 - L1ME1 LINE L1 -1 6163 5729 388 242 40 32 chr3 8887138 8887262 -209149896 + MIR SINE MIR 94 218 -44 339 356 96 36 chr3 8887762 8888316 -209148842 + L2 LINE L2 1818 2404 -910 1737 173 93 18 chr3 8888824 8889222 -209147936 - MSTA LTR MaLR 0 428 1 9057 156 6 35 chr3 8889222 8890848 -209146310 - MSTA-int LTR MaLR 0 1580 3 381 269 11 0 chr3 8890850 8890943 -209146215 - MSTA LTR MaLR 0 428 335 21 36 0 0 chr3 8891203 8891231 -209145927 + AT_rich Low_complexity Low_complexity 1 28 0 1014 287 44 75 chr3 8891826 8892414 -209144744 + L1MCb LINE L1 13 582 -5463 1737 186 0 7 chr3 8893021 8893316 -209143842 - AluJo SINE Alu -17 295 3 353 295 38 0 chr3 8894469 8894574 -209142584 - MIR SINE MIR -104 158 50 315 274 49 74 chr3 8895900 8896182 -209140976 + L1ME4a LINE L1 5634 5922 -199 1902 156 10 0 chr3 8896182 8896471 -209140687 + AluJb SINE Alu 9 300 -12 315 274 49 74 chr3 8896471 8896513 -209140645 + L1ME4a LINE L1 5922 5964 -157 3060 169 87 29 chr3 8896513 8897200 -209139958 - LTR8A LTR ERV1 0 727 1 315 274 49 74 chr3 8897200 8897304 -209139854 + L1ME4a LINE L1 5964 6052 -69 419 242 74 0 chr3 8898629 8898724 -209138434 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 8899208 8899235 -209137923 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 8900114 8900418 -209136740 + L1PA4 LINE L1 1280 1570 -5217 293 259 12 0 chr3 8900416 8900497 -209136661 + L1PA4 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8900495 8900576 -209136582 + L1PA4 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8900574 8900655 -209136503 + L1PA4 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8900653 8900734 -209136424 + L1PA4 LINE L1 1489 1570 -5217 * 17935 181 11 12 chr3 8900732 8905886 -209131272 + L1PA4 LINE L1 1489 6655 -151 1368 134 44 19 chr3 8906391 8906826 -209130332 + LTR54 LTR ERV1 2 508 -2 25 0 0 0 chr3 8907406 8907431 -209129727 + AT_rich Low_complexity Low_complexity 1 25 0 398 322 94 55 chr3 8907668 8907704 -209129454 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 8907704 8907729 -209129429 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 398 322 94 55 chr3 8907729 8908161 -209128997 - L2 LINE L2 -498 2816 2363 496 374 11 26 chr3 8908191 8908339 -209128819 - L3 LINE CR1 -473 1104 960 845 228 105 40 chr3 8908339 8908738 -209128420 + LTR37A LTR ERV1 2 426 0 496 374 11 26 chr3 8908738 8908854 -209128304 - L3 LINE CR1 -617 960 844 844 114 16 0 chr3 8908966 8909089 -209128069 + AluSp/q SINE Alu 177 301 -12 300 283 40 0 chr3 8909639 8909733 -209127425 - MER34 LTR ERV1 0 542 445 339 217 0 0 chr3 8909733 8909793 -209127365 - Tigger5 DNA MER2_type 0 2323 2264 236 213 0 98 chr3 8909814 8909875 -209127283 - Tigger5 DNA MER2_type -2268 55 1 267 146 107 117 chr3 8909875 8909962 -209127196 - LTR49 LTR ERV1 -90 505 420 2169 192 69 16 chr3 8909962 8910556 -209126602 + MER39 LTR ERV1 1 707 0 540 249 57 40 chr3 8910556 8910922 -209126236 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 8911066 8911087 -209126071 + AT_rich Low_complexity Low_complexity 1 21 0 764 167 8 8 chr3 8911597 8911729 -209125429 + FLAM_C SINE Alu 2 133 0 207 100 0 0 chr3 8912477 8912507 -209124651 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 232 286 0 0 chr3 8913442 8913505 -209123653 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr3 8913654 8913675 -209123483 + AT_rich Low_complexity Low_complexity 1 21 0 566 261 48 52 chr3 8914046 8914295 -209122863 - LTR16A1 LTR ERVL -1 456 209 240 324 56 19 chr3 8965814 8965922 -209071236 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 8965987 8966026 -209071132 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 8966618 8966646 -209070512 + AT_rich Low_complexity Low_complexity 1 28 0 2309 104 0 0 chr3 8967446 8967744 -209069414 - AluSx SINE Alu -14 298 1 513 261 97 71 chr3 8967751 8968172 -209068986 - L1ME2 LINE L1 -1 6163 5732 381 242 40 32 chr3 8969293 8969417 -209067741 + MIR SINE MIR 94 218 -44 364 356 94 32 chr3 8969917 8970470 -209066688 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 8970978 8971376 -209065782 - MSTA LTR MaLR 0 428 1 9145 154 6 35 chr3 8971376 8973001 -209064157 - MSTA-int LTR MaLR 0 1580 3 2193 131 79 22 chr3 8973003 8973408 -209063750 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 8974092 8974135 -209063023 + (GA)n Simple_repeat Simple_repeat 2 44 0 270 314 12 12 chr3 8974192 8974278 -209062880 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 8974726 8974833 -209062325 + MIR SINE MIR 30 138 -70 188 267 133 13 chr3 8975650 8975725 -209061433 - MIR SINE MIR -11 251 168 374 224 97 30 chr3 8976146 8976383 -209060775 + HAL1b LINE L1 909 1161 -187 346 341 65 14 chr3 8977162 8977379 -209059779 - MIR SINE MIR -15 247 20 1570 219 88 17 chr3 8977431 8977818 -209059340 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 8977818 8977854 -209059304 + (CA)n Simple_repeat Simple_repeat 2 37 0 1570 219 88 17 chr3 8977854 8977887 -209059271 + MLT2C2 LTR ERVL 432 461 -3 2231 115 51 28 chr3 8978223 8978579 -209058579 - THE1B LTR MaLR 0 364 1 10361 106 4 4 chr3 8978580 8980158 -209057000 - THE1B-int LTR MaLR -1 1579 1 2195 133 0 0 chr3 8980187 8980496 -209056662 - AluSc SINE Alu 0 309 1 2048 135 51 31 chr3 8980496 8980852 -209056306 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 8980982 8981066 -209056092 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 8981066 8981571 -209055587 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 8981571 8981860 -209055298 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 8982481 8982670 -209054488 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 8983406 8983458 -209053700 + GA-rich Low_complexity Low_complexity 1 52 0 2276 161 57 0 chr3 8983669 8984074 -209053084 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 8984074 8985612 -209051546 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 8985636 8986048 -209051110 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 8986717 8986941 -209050217 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 8987031 8987102 -209050056 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 8987509 8987649 -209049509 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 8987680 8987868 -209049290 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 8988009 8988606 -209048552 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 8989534 8989809 -209047349 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 8990178 8990313 -209046845 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 8990313 8991587 -209045571 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 8991587 8991623 -209045535 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 8991653 8991796 -209045362 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 8992130 8992418 -209044740 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 8992425 8992590 -209044568 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 8993681 8993841 -209043317 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 8995083 8995435 -209041723 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 8996541 8996567 -209040591 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 8996659 8997083 -209040075 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 8997233 8997369 -209039789 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 8998081 8998391 -209038767 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 8998474 8998636 -209038522 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 9000126 9000247 -209036911 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 9000416 9000485 -209036673 + GA-rich Low_complexity Low_complexity 3 70 0 7415 32 2 0 chr3 9000779 9001968 -209035190 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 9002135 9002220 -209034938 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 9002530 9002811 -209034347 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 9003264 9003298 -209033860 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 9003313 9003356 -209033802 + (TA)n Simple_repeat Simple_repeat 2 44 0 214 244 0 0 chr3 9003478 9003519 -209033639 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 9003577 9003627 -209033531 + (TA)n Simple_repeat Simple_repeat 2 52 0 1522 174 144 17 chr3 9003908 9004269 -209032889 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 9004582 9004646 -209032512 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 9005155 9005190 -209031968 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 9005190 9005230 -209031928 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 9005230 9005582 -209031576 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 9005582 9006106 -209031052 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 9006093 9006321 -209030837 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 9006352 9006542 -209030616 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 9006546 9007403 -209029755 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 9007448 9007732 -209029426 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 9007744 9009371 -209027787 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 9009806 9010116 -209027042 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 9010886 9010980 -209026178 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 9010991 9011371 -209025787 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 9011606 9011855 -209025303 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 9012258 9012286 -209024872 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 315 0 0 0 chr3 9012347 9012382 -209024776 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1157 101 6 24 chr3 9012388 9012557 -209024601 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 9014062 9014090 -209023068 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 9015086 9015181 -209021977 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 9015665 9015692 -209021466 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 9016571 9016875 -209020283 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 9016873 9016954 -209020204 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9016952 9017033 -209020125 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9017031 9017112 -209020046 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9017110 9017191 -209019967 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9017189 9017270 -209019888 + L1PA15 LINE L1 1489 1570 -5217 * 15280 210 21 16 chr3 9017268 9021754 -209015404 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 9021754 9022048 -209015110 + AluSg SINE Alu 2 296 -14 15280 210 21 16 chr3 9022048 9022855 -209014303 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 9022879 9022925 -209014233 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9023850 9024095 -209013063 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9025121 9025191 -209011967 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9025422 9026095 -209011063 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9026088 9026480 -209010678 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9026481 9026565 -209010593 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9026827 9027046 -209010112 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9027301 9027322 -209009836 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9028001 9028137 -209009021 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9028976 9029205 -209007953 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9029377 9029565 -209007593 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 9029571 9029739 -209007419 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 9029701 9029874 -209007284 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9030063 9030192 -209006966 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9030222 9030396 -209006762 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9030481 9030545 -209006613 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9031490 9031518 -209005640 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9031518 9031560 -209005598 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9032457 9032682 -209004476 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9032831 9032852 -209004306 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9032852 9033146 -209004012 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9033936 9034115 -209003043 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9034514 9034541 -209002617 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9034541 9034892 -209002266 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9034892 9035032 -209002126 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9035097 9035128 -209002030 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9035199 9035380 -209001778 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9035455 9035512 -209001646 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9035519 9036088 -209001070 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9036088 9036571 -209000587 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9036571 9037669 -208999489 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9037718 9037822 -208999336 - MER5B DNA MER1_type -71 107 7 2506 50 7 0 chr3 9038062 9038365 -208998793 + AluY SINE Alu 2 306 -5 309 179 0 0 chr3 9039340 9039386 -208997772 + (TG)n Simple_repeat Simple_repeat 2 50 -18 1974 169 31 6 chr3 9039386 9039741 -208997417 - THE1B LTR MaLR 0 364 1 309 179 0 0 chr3 9039741 9039761 -208997397 + (TG)n Simple_repeat Simple_repeat 49 68 0 247 281 0 0 chr3 9039825 9039882 -208997276 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9041259 9041480 -208995678 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9041911 9041946 -208995212 + AT_rich Low_complexity Low_complexity 1 35 0 2074 150 14 6 chr3 9044471 9044830 -208992328 - L1MA5 LINE L1 -478 5822 5461 2314 171 18 13 chr3 9044834 9045290 -208991868 + L1MA5 LINE L1 5843 6300 0 1004 322 29 17 chr3 9045476 9045978 -208991180 + MLT1H LTR MaLR 1 549 0 3841 175 4 4 chr3 9046383 9047085 -208990073 + L1MB1 LINE L1 5479 6180 -9 869 179 104 112 chr3 9047148 9047311 -208989847 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9047311 9047693 -208989465 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9047693 9047876 -208989282 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9047906 9047980 -208989178 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9048349 9048414 -208988744 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9050389 9050586 -208986572 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9050642 9050922 -208986236 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9050922 9050949 -208986209 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2331 106 0 0 chr3 9052283 9052595 -208984563 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9053231 9053531 -208983627 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9053584 9053682 -208983476 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9054625 9054735 -208982423 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9054735 9054818 -208982340 + (TA)n Simple_repeat Simple_repeat 2 82 0 1746 224 38 33 chr3 9054842 9055235 -208981923 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9055432 9055721 -208981437 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9056682 9056931 -208980227 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9057302 9057323 -208979835 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9057472 9057535 -208979623 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9058470 9058500 -208978658 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9059248 9059379 -208977779 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9060532 9060637 -208976521 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9061963 9062237 -208974921 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9062237 9062534 -208974624 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9062534 9062576 -208974582 + L1ME4a LINE L1 5908 5949 -172 3144 167 86 28 chr3 9062576 9063263 -208973895 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9063263 9063367 -208973791 + L1ME4a LINE L1 5949 6052 -69 429 353 108 4 chr3 9063971 9064249 -208972909 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9064343 9065116 -208972042 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9065487 9065565 -208971593 + AT_rich Low_complexity Low_complexity 1 78 0 415 175 0 19 chr3 9065754 9065857 -208971301 + CT-rich Low_complexity Low_complexity 2 102 0 2448 63 0 0 chr3 9066369 9066671 -208970487 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9067066 9067366 -208969792 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9068732 9068803 -208968355 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9068961 9068991 -208968167 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9069285 9069416 -208967742 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9069330 9069436 -208967722 + MER5A DNA MER1_type 68 186 -3 * 361 302 35 35 chr3 9069466 9069582 -208967576 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9069590 9069674 -208967484 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9069794 9069846 -208967312 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9071313 9071667 -208965491 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9071798 9071833 -208965325 + AT_rich Low_complexity Low_complexity 1 35 0 5530 166 26 24 chr3 9072143 9073034 -208964124 + L1MA6 LINE L1 4422 5310 -990 1952 131 40 0 chr3 9073034 9073332 -208963826 + AluSx SINE Alu 1 310 -2 5530 166 26 24 chr3 9073332 9074115 -208963043 + L1MA6 LINE L1 5310 6090 -210 2156 103 7 3 chr3 9074115 9074406 -208962752 + AluSx SINE Alu 1 292 -20 231 114 0 0 chr3 9074406 9074441 -208962717 + (TA)n Simple_repeat Simple_repeat 2 36 0 5530 166 26 24 chr3 9074441 9074620 -208962538 + L1MA6 LINE L1 6089 6294 -6 771 314 89 14 chr3 9074635 9075119 -208962039 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9075604 9076082 -208961076 + L1MC/D LINE L1 4168 4659 -1487 316 290 41 14 chr3 9076189 9076334 -208960824 + L1MC/D LINE L1 4804 4952 -1194 301 244 67 110 chr3 9076548 9076757 -208960401 + L1MC/D LINE L1 5259 5458 -2350 329 306 57 78 chr3 9076768 9077049 -208960109 + L1MC/D LINE L1 5509 5783 -2025 419 264 183 10 chr3 9078177 9078381 -208958777 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9078400 9078422 -208958736 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2939 83 8 0 chr3 9078422 9078819 -208958339 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9080496 9080525 -208956633 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9080554 9080701 -208956457 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9080703 9080855 -208956303 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9080858 9081054 -208956104 - MER63A DNA MER1_type 0 210 1 41479 40 23 1 chr3 9081295 9087257 -208949901 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9087295 9087316 -208949842 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9088833 9088858 -208948300 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9088970 9089090 -208948068 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9091323 9091417 -208945741 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9092003 9092212 -208944946 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9092327 9092470 -208944688 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9092470 9092513 -208944645 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9092720 9093022 -208944136 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9093298 9093523 -208943635 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9095447 9095482 -208941676 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9095482 9095792 -208941366 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9095792 9095922 -208941236 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9096199 9096818 -208940340 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9096841 9097041 -208940117 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9097130 9097438 -208939720 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9097537 9097591 -208939567 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9097649 9098030 -208939128 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9098090 9098183 -208938975 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9098324 9098540 -208938618 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9099310 9099338 -208937820 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9100141 9100272 -208936886 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9100458 9100543 -208936615 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9100575 9100862 -208936296 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9100924 9101120 -208936038 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9101725 9102113 -208935045 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9104539 9104572 -208932586 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9104603 9104846 -208932312 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9104933 9105833 -208931325 - L1MC2 LINE L1 -9 6335 5408 32 0 0 0 chr3 9108696 9108728 -208928430 + AT_rich Low_complexity Low_complexity 1 32 0 1962 192 31 17 chr3 9109493 9109915 -208927243 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9109973 9110191 -208926967 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9110330 9111082 -208926076 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9111097 9111153 -208926005 - MLT1H LTR MaLR -379 170 116 2029 104 21 10 chr3 9111153 9111441 -208925717 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9111441 9111539 -208925619 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9112049 9112089 -208925069 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9112472 9112503 -208924655 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9113006 9113207 -208923951 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9113467 9113491 -208923667 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9113952 9114839 -208922319 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9114839 9115024 -208922134 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9115032 9115482 -208921676 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9115541 9115610 -208921548 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9115610 9115876 -208921282 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9115876 9116462 -208920696 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9116909 9117077 -208920081 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9118959 9119159 -208917999 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9119258 9119536 -208917622 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9119586 9119607 -208917551 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9120216 9120528 -208916630 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9122070 9122239 -208914919 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9122239 9122369 -208914789 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9122369 9122454 -208914704 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9122596 9122665 -208914493 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9123067 9123371 -208913787 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9123502 9123642 -208913516 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9123775 9123948 -208913210 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9124438 9124823 -208912335 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9124830 9124897 -208912261 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9126784 9126894 -208910264 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9126912 9127031 -208910127 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9127101 9127332 -208909826 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9127562 9127699 -208909459 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9127817 9128328 -208908830 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9128374 9128441 -208908717 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9129832 9130089 -208907069 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9130671 9130969 -208906189 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9131024 9131100 -208906058 + L2 LINE L2 3188 3263 -9 2429 154 2 28 chr3 9131179 9131602 -208905556 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9132866 9132894 -208904264 + (A)n Simple_repeat Simple_repeat 1 28 0 1495 144 0 132 chr3 9134244 9134571 -208902587 + AluJo SINE Alu 11 294 -18 537 291 119 61 chr3 9134575 9134624 -208902534 - MLT1I LTR MaLR -45 364 319 2216 129 3 0 chr3 9134624 9134935 -208902223 - AluSx SINE Alu 0 312 1 537 291 119 61 chr3 9134935 9135229 -208901929 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9135251 9135655 -208901503 - MSTB LTR MaLR 0 426 1 298 311 39 10 chr3 9136123 9136226 -208900932 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9137881 9137945 -208899213 + (CA)n Simple_repeat Simple_repeat 2 65 0 291 200 0 0 chr3 9138160 9138215 -208898943 - L2 LINE L2 0 3313 3259 204 309 11 32 chr3 9138557 9138651 -208898507 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9139720 9139791 -208897367 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2184 126 0 3 chr3 9139925 9140226 -208896932 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9140272 9140315 -208896843 + AT_rich Low_complexity Low_complexity 1 43 0 385 360 29 6 chr3 9140468 9140643 -208896515 + MER5A DNA MER1_type 8 186 -3 278 271 90 71 chr3 9140749 9140904 -208896254 + MIR SINE MIR 41 198 -64 650 134 11 213 chr3 9141955 9142232 -208894926 - L1MA9 LINE L1 0 6312 6092 2126 104 3 3 chr3 9143914 9144201 -208892957 + AluSc SINE Alu 1 287 -22 367 218 0 32 chr3 9144934 9145058 -208892100 + CT-rich Low_complexity Low_complexity 1 120 0 5831 14 0 0 chr3 9145948 9146648 -208890510 - L1PA2 LINE L1 -202 5953 5254 1836 23 0 0 chr3 9146656 9146870 -208890288 + L1PA2 LINE L1 5942 6155 0 2118 129 3 3 chr3 9147267 9147576 -208889582 + AluSx SINE Alu 1 309 -3 186 310 17 17 chr3 9149838 9149896 -208887262 - L2 LINE L2 -26 3246 3189 189 296 19 0 chr3 9150803 9150857 -208886301 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9150907 9150971 -208886187 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9150981 9151077 -208886081 - MIR3 SINE MIR -26 182 87 1777 150 0 11 chr3 9151228 9151502 -208885656 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9151508 9151596 -208885562 + GA-rich Low_complexity Low_complexity 3 91 0 296 303 33 40 chr3 9151658 9151810 -208885348 - L2 LINE L2 -1034 2280 2130 1990 166 63 19 chr3 9151836 9152246 -208884912 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9152838 9152870 -208884288 + polypurine Low_complexity Low_complexity 4 35 0 1942 127 0 38 chr3 9152878 9153244 -208883914 + AluSx SINE Alu 11 365 0 806 288 82 63 chr3 9153352 9153469 -208883689 - MER34 LTR ERV1 0 542 429 1914 173 0 10 chr3 9153469 9153775 -208883383 - AluJb SINE Alu -7 305 3 806 288 82 63 chr3 9153775 9154184 -208882974 - MER34 LTR ERV1 -113 429 6 1264 195 62 94 chr3 9154378 9154603 -208882555 - MER34-int LTR ERV1 -165 6040 5809 2138 199 36 2 chr3 9154603 9155021 -208882137 - MSTB1 LTR MaLR 0 432 1 1264 195 62 94 chr3 9155021 9155413 -208881745 - MER34-int LTR ERV1 -396 5809 4190 1505 181 50 81 chr3 9155427 9155490 -208881668 - MER31-int LTR ERV1 -3613 1323 1260 2241 135 10 39 chr3 9155490 9155874 -208881284 + MER83C LTR ERV1 1 373 0 1505 181 50 81 chr3 9155874 9156329 -208880829 - MER31-int LTR ERV1 -3676 1260 821 2387 53 0 3 chr3 9156543 9156827 -208880331 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9157374 9157397 -208879761 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1821 135 7 7 chr3 9157398 9157672 -208879486 - AluSx SINE Alu -36 276 3 545 264 51 43 chr3 9157754 9157954 -208879204 - MER34 LTR ERV1 0 542 338 2823 177 91 56 chr3 9157954 9158656 -208878502 + LTR8A LTR ERV1 1 727 0 545 264 51 43 chr3 9158656 9158690 -208878468 - MER34 LTR ERV1 -204 338 306 447 241 0 9 chr3 9158785 9158897 -208878261 - MER34 LTR ERV1 -431 111 1 1591 220 58 114 chr3 9159637 9160427 -208876731 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9160804 9160841 -208876317 + AT_rich Low_complexity Low_complexity 1 37 0 650 254 78 15 chr3 9161215 9161420 -208875738 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9162271 9162473 -208874685 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9162796 9163105 -208874053 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9163108 9163335 -208873823 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9163715 9163901 -208873257 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9163977 9164039 -208873119 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9164105 9164439 -208872719 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9164439 9164752 -208872406 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9164752 9165007 -208872151 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9165028 9165159 -208871999 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9165441 9165588 -208871570 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9166217 9166991 -208870167 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9167142 9167230 -208869928 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9167296 9167323 -208869835 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9167327 9167526 -208869632 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9167614 9167710 -208869448 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9167710 9168004 -208869154 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9168004 9168604 -208868554 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9168602 9168787 -208868371 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9168811 9168856 -208868302 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9168871 9169052 -208868106 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9169147 9169923 -208867235 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9170325 9170408 -208866750 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9170968 9171152 -208866006 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9171158 9171247 -208865911 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9171265 9171379 -208865779 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9171615 9171731 -208865427 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9171731 9171906 -208865252 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9172237 9172409 -208864749 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9172409 9172705 -208864453 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9172705 9173041 -208864117 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9173650 9173737 -208863421 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9173816 9173864 -208863294 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9173881 9173966 -208863192 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9175280 9175415 -208861743 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9175927 9176133 -208861025 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9176311 9176404 -208860754 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9176424 9176542 -208860616 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9176599 9176627 -208860531 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9176652 9176682 -208860476 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9176822 9176941 -208860217 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9178181 9178237 -208858921 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9180227 9180353 -208856805 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9183418 9183505 -208853653 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9183992 9184292 -208852866 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9185208 9185438 -208851720 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9186335 9186528 -208850630 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9186734 9186768 -208850390 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9186769 9186838 -208850320 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9186955 9187073 -208850085 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9187087 9187167 -208849991 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9187167 9187240 -208849918 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9187244 9188111 -208849047 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9188121 9188180 -208848978 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9188489 9188520 -208848638 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9189512 9189579 -208847579 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9189633 9190247 -208846911 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9190247 9190538 -208846620 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9190564 9190789 -208846369 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9191150 9191390 -208845768 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9191637 9191860 -208845298 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9192448 9192805 -208844353 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9193013 9193042 -208844116 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9193151 9193447 -208843711 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9193765 9194067 -208843091 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9194270 9194328 -208842830 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9194975 9195019 -208842139 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9195535 9195582 -208841576 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9195808 9195949 -208841209 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9195953 9196114 -208841044 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9196248 9196431 -208840727 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9196442 9196614 -208840544 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9196681 9196741 -208840417 - L2 LINE L2 -218 3054 2997 213 180 0 0 chr3 9248270 9248320 -208788838 + GA-rich Low_complexity Low_complexity 3 52 0 468 118 13 0 chr3 9248633 9248709 -208788449 - MADE1 DNA Mariner 0 80 4 734 252 57 71 chr3 9249983 9250455 -208786703 - MLT1C LTR MaLR 0 626 6 300 111 0 0 chr3 9251029 9251083 -208786075 + (CA)n Simple_repeat Simple_repeat 2 55 0 239 275 47 19 chr3 9252257 9252450 -208784708 - MER102b DNA MER1_type 0 341 80 260 157 8 164 chr3 9252762 9252896 -208784262 - MER112 DNA MER1_type -103 157 45 242 333 51 51 chr3 9252935 9253052 -208784106 - MIR3 SINE MIR -48 160 44 2984 310 76 32 chr3 9253155 9254923 -208782235 + L2 LINE L2 1307 3164 -149 234 189 0 84 chr3 9254924 9255019 -208782139 + L1MC4 LINE L1 6609 6695 -1347 291 291 60 82 chr3 9255021 9255155 -208782003 + L2 LINE L2 3182 3312 -1 309 135 0 0 chr3 9255191 9255243 -208781915 + (TAA)n Simple_repeat Simple_repeat 3 54 0 259 359 90 12 chr3 9255297 9255464 -208781694 - MIR SINE MIR -61 201 22 367 340 102 12 chr3 9255499 9255831 -208781327 + LTR16A LTR ERVL 1 362 -88 559 289 17 8 chr3 9256830 9257065 -208780093 + L1MC4 LINE L1 7665 7901 -141 235 204 0 0 chr3 9257066 9257120 -208780038 + L1MC4 LINE L1 7986 8039 -3 23 0 0 0 chr3 9257237 9257260 -208779898 + AT_rich Low_complexity Low_complexity 1 23 0 659 326 83 42 chr3 9257261 9257419 -208779739 + L2 LINE L2 2453 2603 -711 2383 42 0 11 chr3 9257419 9257736 -208779422 - AluY SINE Alu 0 314 1 659 326 83 42 chr3 9257736 9257913 -208779245 + L2 LINE L2 2603 2803 -511 23 54 0 0 chr3 9257919 9257956 -208779202 + AT_rich Low_complexity Low_complexity 1 37 0 250 185 0 0 chr3 9257991 9258045 -208779113 - L1MC4 LINE L1 -3 8039 7986 310 294 54 76 chr3 9258914 9259116 -208778042 + MIR SINE MIR 5 206 -56 535 262 0 14 chr3 9259295 9259440 -208777718 + MER63 DNA MER1_type 5 773 -289 375 248 20 0 chr3 9259457 9259558 -208777600 + Charlie8 DNA MER1_type 88 190 -2227 283 272 37 0 chr3 9259879 9259960 -208777198 - MIR SINE MIR -49 213 130 1401 211 82 39 chr3 9259971 9260411 -208776747 + MLT1C LTR MaLR 1 459 -8 220 167 0 0 chr3 9260576 9260618 -208776540 - MER5B DNA MER1_type -136 42 1 1769 173 3 22 chr3 9260939 9261257 -208775901 + AluJo SINE Alu 1 312 0 246 83 0 0 chr3 9261346 9261382 -208775776 + Alu SINE Alu 46 81 -94 438 298 61 33 chr3 9261445 9261626 -208775532 - MIR SINE MIR -65 197 12 195 379 35 0 chr3 9262321 9262408 -208774750 - L3 LINE CR1 -20 1557 1468 1968 138 0 52 chr3 9262799 9263124 -208774034 + AluJb SINE Alu 1 308 -4 1064 190 23 31 chr3 9264011 9264269 -208772889 + MLT1A1 LTR MaLR 110 365 0 403 211 65 16 chr3 9264642 9264765 -208772393 - MER104 DNA Tc2 -12 168 40 608 197 142 0 chr3 9264826 9264953 -208772205 - FRAM SINE Alu -30 146 2 423 250 62 0 chr3 9265680 9265792 -208771366 + MIR SINE MIR 2 120 -142 190 336 160 8 chr3 9266139 9266258 -208770900 - L2 LINE L2 0 3272 3136 2356 320 127 25 chr3 9266369 9268021 -208769137 - L2 LINE L2 -1449 1865 47 24 0 0 0 chr3 9269087 9269111 -208768047 + AT_rich Low_complexity Low_complexity 1 24 0 446 284 57 7 chr3 9269200 9269341 -208767817 + MIR SINE MIR 97 244 -18 911 232 93 87 chr3 9269867 9270337 -208766821 + L1ME2 LINE L1 5617 6262 -72 198 103 0 0 chr3 9270337 9270366 -208766792 + (CA)n Simple_repeat Simple_repeat 2 30 0 911 232 93 87 chr3 9270366 9270437 -208766721 + L1ME2 LINE L1 6262 6331 -3 191 365 24 0 chr3 9270584 9270669 -208766489 + L2 LINE L2 3139 3225 -47 1885 171 3 0 chr3 9272578 9272871 -208764287 - AluSg SINE Alu -16 294 1 2117 111 7 3 chr3 9272882 9273180 -208763978 - AluSx SINE Alu -13 299 1 186 43 0 0 chr3 9273242 9273265 -208763893 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 239 250 65 28 chr3 9273391 9273499 -208763659 - MIR SINE MIR -38 224 113 412 308 151 0 chr3 9273600 9273785 -208763373 - MIR SINE MIR 0 262 50 1065 144 18 1 chr3 9274045 9274295 -208762863 + L1MA4A LINE L1 6014 6247 -56 288 250 0 24 chr3 9274495 9274579 -208762579 - MIR SINE MIR -15 247 166 425 350 48 27 chr3 9275094 9275425 -208761733 + MLT1J2 LTR MaLR 113 450 0 1886 262 74 15 chr3 9275646 9275702 -208761456 + L1ME1 LINE L1 45 96 -6300 188 0 0 69 chr3 9275702 9275731 -208761427 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1886 262 74 15 chr3 9275731 9276338 -208760820 + L1ME1 LINE L1 96 747 -5649 340 113 0 0 chr3 9276344 9276406 -208760752 + L1ME1 LINE L1 2192 2253 -4143 2197 219 139 16 chr3 9276412 9277244 -208759914 + L1ME1 LINE L1 2384 3318 -2897 * 41320 44 5 2 chr3 9277243 9283379 -208753779 + L1PA4 LINE L1 1 6155 0 4757 247 51 22 chr3 9283358 9285934 -208751224 + L1ME1 LINE L1 3208 5885 -281 * 415 200 36 9 chr3 9286045 9286155 -208751003 + L1MA10 LINE L1 6219 6331 -3 225 269 58 39 chr3 9286155 9286259 -208750899 - MIR SINE MIR -49 213 108 269 246 0 0 chr3 9286650 9286719 -208750439 + (TGAA)n Simple_repeat Simple_repeat 4 72 0 2141 103 0 0 chr3 9288044 9288326 -208748832 + AluSc SINE Alu 1 282 -27 24 32 0 0 chr3 9288327 9288358 -208748800 + AT_rich Low_complexity Low_complexity 1 31 0 184 358 105 0 chr3 9289249 9289344 -208747814 + MIR3 SINE MIR 97 201 -7 479 332 55 14 chr3 9290360 9290580 -208746578 + MIR SINE MIR 34 262 0 344 223 28 137 chr3 9291484 9291695 -208745463 + L1ME4a LINE L1 5638 5825 -296 1920 233 58 109 chr3 9291789 9292425 -208744733 - LTR41 LTR ERVL -8 765 177 2030 108 0 51 chr3 9292425 9292776 -208744382 + AluSx SINE Alu 1 312 0 1920 233 58 109 chr3 9292776 9292945 -208744213 - LTR41 LTR ERVL -596 177 1 284 339 0 0 chr3 9293383 9293498 -208743660 + MER103 DNA DNA 6 120 -46 209 310 157 34 chr3 9293553 9293821 -208743337 + L2 LINE L2 2384 2684 -630 2236 119 0 0 chr3 9295379 9295690 -208741468 + AluSx SINE Alu 1 311 -1 212 300 0 0 chr3 9296513 9296563 -208740595 + L2 LINE L2 3182 3231 -82 341 302 40 16 chr3 9296603 9296729 -208740429 - L2 LINE L2 -27 3286 3158 269 294 25 68 chr3 9297107 9297270 -208739888 - MER117 DNA MER1_type -41 156 1 386 337 61 6 chr3 9298185 9298366 -208738792 - MIR SINE MIR -40 222 32 26 30 0 0 chr3 9299924 9299957 -208737201 + AT_rich Low_complexity Low_complexity 1 33 0 655 284 60 18 chr3 9300441 9300772 -208736386 + L1ME4a LINE L1 5620 5964 -157 752 18 9 28 chr3 9300895 9301004 -208736154 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2048 127 0 0 chr3 9301012 9301288 -208735870 - AluSx SINE Alu -36 276 1 332 283 38 47 chr3 9301489 9301701 -208735457 + L1ME LINE L1 5617 5826 -295 21 57 0 0 chr3 9302268 9302303 -208734855 + AT_rich Low_complexity Low_complexity 1 35 0 826 337 78 20 chr3 9302395 9302885 -208734273 + L3 LINE CR1 1057 1574 -3 237 98 0 0 chr3 9303083 9303124 -208734034 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 713 254 0 44 chr3 9303876 9304057 -208733101 - MER5B DNA MER1_type -5 173 1 284 339 34 17 chr3 9304322 9304440 -208732718 - MIR SINE MIR -65 143 34 191 194 0 0 chr3 9305061 9305092 -208732066 - MIR SINE MIR -58 150 120 2054 142 3 0 chr3 9305119 9305430 -208731728 + AluSx SINE Alu 1 312 0 199 262 98 0 chr3 9306259 9306320 -208730838 + MIR SINE MIR 80 146 -116 1923 131 7 10 chr3 9307863 9308161 -208728997 - AluSx SINE Alu -15 297 1 24 32 0 0 chr3 9308642 9308673 -208728485 + AT_rich Low_complexity Low_complexity 1 31 0 1952 116 0 31 chr3 9308926 9309248 -208727910 + AluSx SINE Alu 1 313 0 262 250 89 27 chr3 9309498 9309610 -208727548 - MIR SINE MIR -60 202 84 264 305 0 0 chr3 9309788 9309847 -208727311 + L2 LINE L2 3214 3272 0 419 248 17 26 chr3 9309860 9309977 -208727181 - MIR SINE MIR -102 160 45 240 284 30 0 chr3 9310220 9310287 -208726871 + MIR SINE MIR 74 142 -66 604 262 107 5 chr3 9311202 9311389 -208725769 - MIR SINE MIR -1 261 56 1679 191 62 0 chr3 9311655 9311980 -208725178 + MLT1A1 LTR MaLR 1 345 -20 313 308 140 0 chr3 9312209 9312316 -208724842 + L2 LINE L2 3191 3312 -1 2180 101 3 0 chr3 9313733 9314021 -208723137 + AluSg SINE Alu 1 289 -21 268 378 61 6 chr3 9315813 9315993 -208721165 + L3 LINE CR1 1375 1564 -13 453 269 6 25 chr3 9316076 9316236 -208720922 - MER103 DNA DNA -2 164 8 220 299 13 0 chr3 9317133 9317210 -208719948 + L3b LINE CR1 1181 1258 -325 466 252 9 0 chr3 9317702 9317813 -208719345 - FLAM_A SINE Alu -15 127 16 401 298 29 41 chr3 9318014 9318185 -208718973 + MLT1J2 LTR MaLR 279 447 -3 261 363 44 0 chr3 9318883 9318996 -208718162 - L2 LINE L2 0 3272 3155 315 336 28 28 chr3 9319831 9319974 -208717184 + MIR3 SINE MIR 5 147 -61 215 350 48 10 chr3 9320855 9320958 -208716200 + MIR3 SINE MIR 101 207 -1 700 199 8 0 chr3 9321229 9321360 -208715798 + FLAM_C SINE Alu 1 132 -1 881 163 0 6 chr3 9321416 9321582 -208715576 + L1MA10 LINE L1 6167 6331 -3 21 0 0 0 chr3 9321593 9321614 -208715544 + AT_rich Low_complexity Low_complexity 1 21 0 340 275 169 38 chr3 9322300 9322460 -208714698 + MLT1A1 LTR MaLR 369 549 0 476 321 61 57 chr3 9322479 9323415 -208713743 + L1ME LINE L1 3803 4745 -1401 1366 227 14 7 chr3 9323415 9323710 -208713448 + AluJo SINE Alu 1 297 -15 476 321 61 57 chr3 9323710 9323807 -208713351 + L1ME LINE L1 4745 4840 -1306 511 298 94 12 chr3 9323952 9324123 -208713035 - MIR SINE MIR -67 195 11 529 315 91 20 chr3 9324419 9324914 -208712244 + L1ME LINE L1 5255 5784 -378 288 0 0 0 chr3 9325551 9325583 -208711575 + (TG)n Simple_repeat Simple_repeat 2 33 0 235 258 45 0 chr3 9326593 9326682 -208710476 + A-rich Low_complexity Low_complexity 4 96 0 2374 82 0 28 chr3 9326798 9327116 -208710042 - AluSc SINE Alu 0 309 1 208 360 0 20 chr3 9328516 9328616 -208708542 + MIR SINE MIR 45 142 -66 273 336 69 8 chr3 9329156 9329287 -208707871 + MIR SINE MIR 124 262 0 295 317 63 0 chr3 9329349 9329491 -208707667 - MIR SINE MIR -57 205 55 615 179 172 13 chr3 9329584 9329735 -208707423 - FRAM SINE Alu 0 176 2 694 312 24 20 chr3 9330293 9330540 -208706618 + LTR33 LTR ERVL 45 292 -229 299 258 281 6 chr3 9330805 9330983 -208706175 - MIR SINE MIR -2 260 34 788 209 70 0 chr3 9331014 9331186 -208705972 - MER5A DNA MER1_type -2 187 4 449 287 54 0 chr3 9332843 9332972 -208704186 + MIR SINE MIR 59 194 -68 336 200 0 0 chr3 9333821 9333901 -208703257 + (TA)n Simple_repeat Simple_repeat 2 81 0 223 338 188 6 chr3 9335244 9335404 -208701754 + MIR SINE MIR 64 252 -10 318 50 0 0 chr3 9335413 9335453 -208701705 + (CAT)n Simple_repeat Simple_repeat 2 41 0 351 276 24 8 chr3 9335919 9336042 -208701116 - LTR67 LTR ERVL -13 544 420 351 354 31 15 chr3 9336159 9336289 -208700869 - LTR67 LTR ERVL -316 241 110 33981 38 0 0 chr3 9336289 9341201 -208695957 + L1PA3 LINE L1 1239 6152 -3 294 258 89 57 chr3 9341486 9341610 -208695548 + MIR SINE MIR 91 218 -44 249 33 0 0 chr3 9341633 9341663 -208695495 + (TTA)n Simple_repeat Simple_repeat 1 30 0 183 371 21 67 chr3 9341703 9341897 -208695261 - MIR SINE MIR -30 232 48 1673 93 4 39 chr3 9341924 9342181 -208694977 - L1PA6 LINE L1 0 6154 5907 1181 161 55 0 chr3 9342217 9342306 -208694852 + L1MA9 LINE L1 6062 6145 -167 234 62 0 0 chr3 9342306 9342338 -208694820 + (CA)n Simple_repeat Simple_repeat 1 32 0 1181 161 55 0 chr3 9342338 9342484 -208694674 + L1MA9 LINE L1 6145 6310 -2 2542 198 2 10 chr3 9342841 9343331 -208693827 + MER66B LTR ERV1 1 486 0 2247 120 0 0 chr3 9343536 9343844 -208693314 + AluSg SINE Alu 1 308 -2 213 262 0 0 chr3 9343848 9343890 -208693268 - MIR SINE MIR -89 119 78 374 253 24 0 chr3 9344079 9344162 -208692996 - L3 LINE CR1 -100 1477 1393 35 78 0 0 chr3 9345096 9345173 -208691985 + AT_rich Low_complexity Low_complexity 1 77 0 477 296 132 38 chr3 9345195 9345742 -208691416 + L1ME4a LINE L1 5320 5917 -204 798 230 0 0 chr3 9345870 9346035 -208691123 - FRAM SINE Alu -12 164 1 297 0 0 0 chr3 9346479 9346512 -208690646 + (CA)n Simple_repeat Simple_repeat 2 34 0 1039 93 42 3 chr3 9346686 9346878 -208690280 - L1MC/D LINE L1 -738 5430 5254 3173 71 7 0 chr3 9346879 9347304 -208689854 + L1PA10 LINE L1 5741 6168 0 26 74 0 0 chr3 9347488 9347542 -208689616 + AT_rich Low_complexity Low_complexity 1 54 0 15280 209 24 18 chr3 9348793 9352730 -208684428 + L1PA15 LINE L1 2841 6799 -804 2105 126 3 0 chr3 9352730 9353024 -208684134 + AluSg SINE Alu 2 296 -14 15280 209 24 18 chr3 9353024 9353831 -208683327 + L1PA15 LINE L1 6799 7600 -3 32 43 0 0 chr3 9353855 9353901 -208683257 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9354826 9355071 -208682087 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9356097 9356167 -208680991 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9356398 9357071 -208680087 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9357064 9357456 -208679702 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9357457 9357541 -208679617 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9357803 9358022 -208679136 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9358277 9358298 -208678860 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9358977 9359113 -208678045 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9359952 9360181 -208676977 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9360353 9360541 -208676617 + L2 LINE L2 2988 3171 -142 412 172 65 6 chr3 9360546 9360715 -208676443 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 414 127 58 58 chr3 9360677 9360850 -208676308 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9361039 9361168 -208675990 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9361198 9361372 -208675786 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9361457 9361521 -208675637 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9362465 9362493 -208674665 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9362493 9362535 -208674623 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9363432 9363657 -208673501 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9363806 9363827 -208673331 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9363827 9364121 -208673037 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9364911 9365090 -208672068 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9365489 9365516 -208671642 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9365516 9365867 -208671291 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9365867 9366007 -208671151 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9366072 9366103 -208671055 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9366174 9366355 -208670803 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9366430 9366487 -208670671 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9366494 9367063 -208670095 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9367063 9367546 -208669612 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9367546 9368644 -208668514 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9368693 9368797 -208668361 - MER5B DNA MER1_type -71 107 7 2539 49 7 0 chr3 9369037 9369344 -208667814 + AluY SINE Alu 2 310 -1 300 91 0 0 chr3 9370318 9370362 -208666796 + (TG)n Simple_repeat Simple_repeat 1 44 0 1974 169 31 6 chr3 9370364 9370719 -208666439 - THE1B LTR MaLR 0 364 1 247 281 0 0 chr3 9370803 9370860 -208666298 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9372237 9372458 -208664700 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9372889 9372924 -208664234 + AT_rich Low_complexity Low_complexity 1 35 0 2089 148 14 6 chr3 9375450 9375809 -208661349 - L1MA5 LINE L1 -478 5822 5461 2376 172 9 13 chr3 9375813 9376273 -208660885 + L1MA5 LINE L1 5843 6300 0 1033 301 32 60 chr3 9376459 9376956 -208660202 + MLT1H LTR MaLR 1 549 0 3811 175 4 4 chr3 9377361 9378057 -208659101 + L1MB1 LINE L1 5479 6174 -15 869 179 104 112 chr3 9378128 9378291 -208658867 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9378291 9378673 -208658485 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9378673 9378856 -208658302 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9378886 9378960 -208658198 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9379329 9379394 -208657764 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9381369 9381566 -208655592 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9381622 9381902 -208655256 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9381902 9381929 -208655229 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2331 106 0 0 chr3 9383263 9383575 -208653583 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9384211 9384511 -208652647 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9384564 9384662 -208652496 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9385605 9385715 -208651443 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9385715 9385798 -208651360 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 9385822 9386215 -208650943 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9386412 9386701 -208650457 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9387662 9387911 -208649247 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9388282 9388303 -208648855 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9388452 9388515 -208648643 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9389450 9389480 -208647678 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9390228 9390359 -208646799 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9391512 9391617 -208645541 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9392943 9393217 -208643941 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9393217 9393514 -208643644 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9393514 9393556 -208643602 + L1ME4a LINE L1 5908 5949 -172 3134 167 86 28 chr3 9393556 9394243 -208642915 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9394243 9394347 -208642811 + L1ME4a LINE L1 5949 6052 -69 439 349 108 4 chr3 9394951 9395229 -208641929 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9395323 9396096 -208641062 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9396467 9396545 -208640613 + AT_rich Low_complexity Low_complexity 1 78 0 353 195 0 11 chr3 9396734 9396821 -208640337 + CT-rich Low_complexity Low_complexity 2 87 0 2448 63 0 0 chr3 9397333 9397635 -208639523 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9398032 9398332 -208638826 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9399698 9399769 -208637389 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9399927 9399957 -208637201 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9400251 9400382 -208636776 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9400296 9400402 -208636756 + MER5A DNA MER1_type 68 186 -3 * 334 310 35 35 chr3 9400432 9400548 -208636610 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9400556 9400640 -208636518 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9400761 9400813 -208636345 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9402280 9402634 -208634524 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9402765 9402800 -208634358 + AT_rich Low_complexity Low_complexity 1 35 0 4752 182 26 40 chr3 9403110 9404001 -208633157 + L1MA4 LINE L1 4422 5325 -975 1944 131 40 0 chr3 9404001 9404298 -208632860 + AluSx SINE Alu 1 309 -3 4752 182 26 40 chr3 9404298 9405081 -208632077 + L1MA4 LINE L1 5325 6081 -219 2184 102 7 3 chr3 9405081 9405375 -208631783 + AluSx SINE Alu 1 295 -17 4752 182 26 40 chr3 9405375 9405586 -208631572 + L1MA4 LINE L1 6081 6294 -6 771 314 89 14 chr3 9405601 9406085 -208631073 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9406570 9407048 -208630110 + L1ME4a LINE L1 4168 4659 -1487 306 290 41 14 chr3 9407155 9407300 -208629858 + L1ME4a LINE L1 4804 4952 -1194 302 239 67 110 chr3 9407514 9407723 -208629435 + L1ME4a LINE L1 5259 5458 -2350 318 310 57 78 chr3 9407734 9408015 -208629143 + L1ME4a LINE L1 5509 5783 -2025 419 264 183 10 chr3 9409143 9409347 -208627811 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9409366 9409388 -208627770 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2921 86 8 0 chr3 9409388 9409785 -208627373 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9411466 9411495 -208625663 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9411524 9411671 -208625487 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9411673 9411825 -208625333 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9411828 9412024 -208625134 - MER63A DNA MER1_type 0 210 1 41706 39 23 1 chr3 9412265 9418227 -208618931 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9418265 9418286 -208618872 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9419803 9419828 -208617330 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9419940 9420060 -208617098 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9422293 9422387 -208614771 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9422973 9423182 -208613976 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9423297 9423440 -208613718 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9423440 9423483 -208613675 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9423690 9423992 -208613166 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9424268 9424493 -208612665 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9426417 9426452 -208610706 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9426452 9426762 -208610396 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9426762 9426892 -208610266 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9427169 9427788 -208609370 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9427811 9428011 -208609147 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9428100 9428408 -208608750 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9428507 9428561 -208608597 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9428619 9429000 -208608158 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9429060 9429153 -208608005 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9429294 9429510 -208607648 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9430279 9430307 -208606851 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9431110 9431241 -208605917 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9431427 9431512 -208605646 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9431544 9431831 -208605327 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9431893 9432089 -208605069 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9432694 9433082 -208604076 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9435513 9435546 -208601612 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9435577 9435820 -208601338 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9435907 9436807 -208600351 - L1MC2 LINE L1 -9 6335 5408 213 65 0 0 chr3 9439670 9439701 -208597457 + (T)n Simple_repeat Simple_repeat 1 31 0 1962 192 31 17 chr3 9440468 9440890 -208596268 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9440948 9441166 -208595992 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9441305 9442057 -208595101 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9442072 9442128 -208595030 - MLT1H LTR MaLR -379 170 116 2016 108 21 10 chr3 9442128 9442416 -208594742 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9442416 9442514 -208594644 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9443024 9443064 -208594094 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9443447 9443478 -208593680 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9443981 9444182 -208592976 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9444442 9444466 -208592692 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9444927 9445814 -208591344 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9445814 9445999 -208591159 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9446007 9446457 -208590701 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9446516 9446585 -208590573 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9446585 9446851 -208590307 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9446851 9447437 -208589721 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9447884 9448052 -208589106 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9449934 9450134 -208587024 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9450233 9450511 -208586647 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9450561 9450582 -208586576 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9451191 9451503 -208585655 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9453045 9453214 -208583944 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9453214 9453344 -208583814 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9453344 9453429 -208583729 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9453571 9453640 -208583518 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9454042 9454346 -208582812 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9454477 9454617 -208582541 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9454750 9454923 -208582235 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9455413 9455798 -208581360 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9455805 9455872 -208581286 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9457759 9457869 -208579289 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9457887 9458006 -208579152 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9458076 9458307 -208578851 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9458537 9458674 -208578484 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9458792 9459303 -208577855 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9459349 9459416 -208577742 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9460807 9461064 -208576094 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9461646 9461944 -208575214 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9461999 9462075 -208575083 + L2 LINE L2 3188 3263 -9 2458 151 2 28 chr3 9462154 9462577 -208574581 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9463841 9463869 -208573289 + (A)n Simple_repeat Simple_repeat 1 28 0 1479 144 0 132 chr3 9465219 9465546 -208571612 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9465550 9465599 -208571559 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9465599 9465910 -208571248 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9465910 9466204 -208570954 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9466226 9466630 -208570528 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9467098 9467201 -208569957 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9468856 9468920 -208568238 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9469135 9469190 -208567968 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9469532 9469626 -208567532 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9470695 9470766 -208566392 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9470900 9471201 -208565957 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9471247 9471290 -208565868 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9471443 9471618 -208565540 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9471724 9471879 -208565279 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9472930 9473207 -208563951 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9474891 9475176 -208561982 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9475909 9476033 -208561125 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9476049 9476307 -208560851 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9476923 9477623 -208559535 - L1PA2 LINE L1 -202 5953 5254 1826 23 0 0 chr3 9477631 9477845 -208559313 + L1PA2 LINE L1 5942 6155 0 2101 121 3 3 chr3 9478242 9478540 -208558618 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9480813 9480871 -208556287 - L2 LINE L2 -26 3246 3189 190 296 19 0 chr3 9481778 9481832 -208555326 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9481882 9481946 -208555212 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9481956 9482052 -208555106 - MIR3 SINE MIR -26 182 87 1764 150 0 11 chr3 9482203 9482477 -208554681 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9482483 9482571 -208554587 + GA-rich Low_complexity Low_complexity 3 91 0 299 303 33 40 chr3 9482633 9482785 -208554373 - L2 LINE L2 -1034 2280 2130 2000 166 63 19 chr3 9482811 9483221 -208553937 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9483813 9483845 -208553313 + polypurine Low_complexity Low_complexity 4 35 0 1926 127 0 38 chr3 9483853 9484219 -208552939 + AluSx SINE Alu 11 365 0 950 288 82 63 chr3 9484327 9484444 -208552714 - MER34 LTR ERV1 0 542 429 1885 173 0 10 chr3 9484444 9484750 -208552408 - AluJb SINE Alu -7 305 3 950 288 82 63 chr3 9484750 9485159 -208551999 - MER34 LTR ERV1 -113 429 6 1435 193 62 94 chr3 9485353 9485578 -208551580 - MER34-int LTR ERV1 -165 6040 5809 2148 201 36 2 chr3 9485578 9485996 -208551162 - MSTB1 LTR MaLR 0 432 1 1435 193 62 94 chr3 9485996 9486388 -208550770 - MER34-int LTR ERV1 -396 5809 4190 1666 187 45 93 chr3 9486398 9486465 -208550693 - MER31-int LTR ERV1 -3609 1327 1258 2233 135 10 39 chr3 9486465 9486849 -208550309 + MER83C LTR ERV1 1 373 0 1666 187 45 93 chr3 9486849 9487353 -208549805 - MER31-int LTR ERV1 -3678 1258 783 2387 53 0 3 chr3 9487518 9487802 -208549356 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9488349 9488372 -208548786 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1821 135 7 7 chr3 9488373 9488647 -208548511 - AluSx SINE Alu -36 276 3 545 264 51 43 chr3 9488729 9488929 -208548229 - MER34 LTR ERV1 0 542 338 2823 177 91 56 chr3 9488929 9489631 -208547527 + LTR8A LTR ERV1 1 727 0 545 264 51 43 chr3 9489631 9489665 -208547493 - MER34 LTR ERV1 -204 338 306 447 241 0 9 chr3 9489760 9489872 -208547286 - MER34 LTR ERV1 -431 111 1 1591 220 58 114 chr3 9490612 9491402 -208545756 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9491779 9491816 -208545342 + AT_rich Low_complexity Low_complexity 1 37 0 650 254 78 15 chr3 9492190 9492395 -208544763 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9493246 9493448 -208543710 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9493771 9494080 -208543078 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9494083 9494310 -208542848 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9494690 9494876 -208542282 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9494952 9495014 -208542144 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9495080 9495414 -208541744 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9495414 9495727 -208541431 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9495727 9495982 -208541176 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9496003 9496134 -208541024 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9496416 9496563 -208540595 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9497192 9497966 -208539192 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9498117 9498205 -208538953 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9498271 9498298 -208538860 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9498302 9498501 -208538657 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9498589 9498685 -208538473 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9498685 9498979 -208538179 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9498979 9499579 -208537579 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9499577 9499762 -208537396 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9499786 9499831 -208537327 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9499846 9500027 -208537131 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9500122 9500898 -208536260 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9501300 9501383 -208535775 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9501943 9502127 -208535031 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9502133 9502222 -208534936 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9502240 9502354 -208534804 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9502590 9502706 -208534452 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9502706 9502881 -208534277 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9503212 9503384 -208533774 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9503384 9503680 -208533478 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9503680 9504016 -208533142 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9504625 9504712 -208532446 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9504791 9504839 -208532319 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9504856 9504941 -208532217 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9506255 9506390 -208530768 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9506902 9507108 -208530050 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9507286 9507379 -208529779 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9507399 9507517 -208529641 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9507574 9507602 -208529556 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9507627 9507657 -208529501 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9507797 9507916 -208529242 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9509156 9509212 -208527946 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9511202 9511328 -208525830 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9514393 9514480 -208522678 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9514967 9515267 -208521891 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9516183 9516413 -208520745 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9517310 9517503 -208519655 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9517709 9517743 -208519415 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9517744 9517813 -208519345 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9517930 9518048 -208519110 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9518062 9518142 -208519016 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9518142 9518215 -208518943 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9518219 9519086 -208518072 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9519096 9519155 -208518003 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9519464 9519495 -208517663 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9520487 9520554 -208516604 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9520608 9521222 -208515936 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9521222 9521513 -208515645 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9521539 9521764 -208515394 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9522125 9522365 -208514793 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9522612 9522835 -208514323 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9523423 9523780 -208513378 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9523988 9524017 -208513141 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9524126 9524422 -208512736 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9524740 9525042 -208512116 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9525245 9525303 -208511855 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9525950 9525994 -208511164 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9526510 9526557 -208510601 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9526783 9526924 -208510234 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9526928 9527089 -208510069 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9527223 9527406 -208509752 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9527417 9527589 -208509569 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9527656 9527716 -208509442 - L2 LINE L2 -218 3054 2997 32 0 0 0 chr3 9578353 9578385 -208458773 + AT_rich Low_complexity Low_complexity 1 32 0 1962 192 31 17 chr3 9579150 9579572 -208457586 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9579630 9579848 -208457310 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9579987 9580739 -208456419 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9580754 9580810 -208456348 - MLT1H LTR MaLR -379 170 116 2029 104 21 10 chr3 9580810 9581098 -208456060 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9581098 9581196 -208455962 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9581706 9581746 -208455412 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9582129 9582160 -208454998 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9582663 9582864 -208454294 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9583124 9583148 -208454010 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9583609 9584496 -208452662 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9584496 9584681 -208452477 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9584689 9585139 -208452019 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9585198 9585267 -208451891 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9585267 9585533 -208451625 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9585533 9586119 -208451039 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9586566 9586734 -208450424 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9588616 9588816 -208448342 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9588915 9589193 -208447965 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9589243 9589264 -208447894 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9589873 9590185 -208446973 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9591727 9591896 -208445262 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9591896 9592026 -208445132 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9592026 9592111 -208445047 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9592253 9592322 -208444836 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9592724 9593028 -208444130 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9593159 9593299 -208443859 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9593432 9593605 -208443553 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9594095 9594480 -208442678 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9594487 9594554 -208442604 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9596441 9596551 -208440607 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9596569 9596688 -208440470 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9596758 9596989 -208440169 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9597219 9597356 -208439802 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9597474 9597985 -208439173 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9598031 9598098 -208439060 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9599489 9599746 -208437412 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9600328 9600626 -208436532 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9600681 9600757 -208436401 + L2 LINE L2 3188 3263 -9 2429 154 2 28 chr3 9600836 9601259 -208435899 - MSTB1 LTR MaLR -20 412 1 261 0 0 0 chr3 9602523 9602552 -208434606 + (A)n Simple_repeat Simple_repeat 1 29 0 1479 144 0 132 chr3 9603902 9604229 -208432929 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9604233 9604282 -208432876 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9604282 9604593 -208432565 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9604593 9604887 -208432271 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9604909 9605313 -208431845 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9605781 9605884 -208431274 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9607539 9607603 -208429555 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9607818 9607873 -208429285 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9608215 9608309 -208428849 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9609378 9609449 -208427709 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9609583 9609884 -208427274 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9609930 9609973 -208427185 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9610126 9610301 -208426857 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9610407 9610562 -208426596 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9611613 9611890 -208425268 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9613574 9613859 -208423299 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9614592 9614716 -208422442 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9614732 9614990 -208422168 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9615606 9616306 -208420852 - L1PA4 LINE L1 -202 5953 5254 1572 66 9 0 chr3 9616314 9616526 -208420632 + L1PA4 LINE L1 5942 6155 0 2101 121 3 3 chr3 9616925 9617223 -208419935 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9619496 9619554 -208417604 - L2 LINE L2 -26 3246 3189 190 296 19 0 chr3 9620461 9620515 -208416643 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9620565 9620629 -208416529 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9620639 9620735 -208416423 - MIR3 SINE MIR -26 182 87 1764 150 0 11 chr3 9620886 9621160 -208415998 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9621166 9621254 -208415904 + GA-rich Low_complexity Low_complexity 3 91 0 299 303 33 40 chr3 9621316 9621468 -208415690 - L2 LINE L2 -1034 2280 2130 2000 166 63 19 chr3 9621494 9621904 -208415254 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9622496 9622528 -208414630 + polypurine Low_complexity Low_complexity 4 35 0 1926 127 0 38 chr3 9622536 9622902 -208414256 + AluSx SINE Alu 11 365 0 950 288 82 63 chr3 9623010 9623127 -208414031 - MER34 LTR ERV1 0 542 429 1885 173 0 10 chr3 9623127 9623433 -208413725 - AluJb SINE Alu -7 305 3 950 288 82 63 chr3 9623433 9623842 -208413316 - MER34 LTR ERV1 -113 429 6 1435 193 62 94 chr3 9624036 9624261 -208412897 - MER34-int LTR ERV1 -165 6040 5809 2148 201 36 2 chr3 9624261 9624679 -208412479 - MSTB1 LTR MaLR 0 432 1 1435 193 62 94 chr3 9624679 9625071 -208412087 - MER34-int LTR ERV1 -396 5809 4190 1666 187 45 93 chr3 9625081 9625148 -208412010 - MER31-int LTR ERV1 -3609 1327 1258 2233 135 10 39 chr3 9625148 9625532 -208411626 + MER83C LTR ERV1 1 373 0 1666 187 45 93 chr3 9625532 9626036 -208411122 - MER31-int LTR ERV1 -3678 1258 783 2390 53 0 3 chr3 9626201 9626485 -208410673 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9627032 9627055 -208410103 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1834 131 7 7 chr3 9627056 9627330 -208409828 - AluSx SINE Alu -36 276 3 613 264 51 43 chr3 9627412 9627612 -208409546 - MER34 LTR ERV1 0 542 338 2848 177 91 56 chr3 9627612 9628314 -208408844 + LTR8A LTR ERV1 1 727 0 613 264 51 43 chr3 9628314 9628348 -208408810 - MER34 LTR ERV1 -204 338 306 488 259 76 19 chr3 9628397 9628555 -208408603 - MER34 LTR ERV1 -375 167 1 1817 215 60 115 chr3 9629295 9630085 -208407073 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9630462 9630499 -208406659 + AT_rich Low_complexity Low_complexity 1 37 0 658 254 78 15 chr3 9630873 9631078 -208406080 - MER20 DNA MER1_type 0 219 2 571 281 13 68 chr3 9631896 9632131 -208405027 + MLT1K LTR MaLR 358 579 -9 2350 107 0 3 chr3 9632454 9632763 -208404395 - AluSc SINE Alu -1 308 1 366 361 106 18 chr3 9632766 9632993 -208404165 - MLT1K LTR MaLR -158 430 184 418 253 140 27 chr3 9633373 9633559 -208403599 - MIR SINE MIR -13 249 43 265 259 94 0 chr3 9633612 9633697 -208403461 - MER94 DNA DNA -41 93 1 2635 184 38 35 chr3 9633763 9634097 -208403061 - L1MC2 LINE L1 -11 7770 7439 1892 160 0 26 chr3 9634097 9634410 -208402748 - AluSx SINE Alu -7 305 1 2635 184 38 35 chr3 9634410 9634665 -208402493 - L1MC2 LINE L1 -342 7439 6137 463 275 8 8 chr3 9634686 9634817 -208402341 - L1ME2 LINE L1 -12 6152 6022 712 184 0 27 chr3 9635099 9635246 -208401912 + FLAM_C SINE Alu 1 143 0 2344 234 74 34 chr3 9635875 9636649 -208400509 - L1ME1 LINE L1 -4 6231 5427 505 182 0 0 chr3 9636800 9636888 -208400270 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9636954 9636981 -208400177 + AT_rich Low_complexity Low_complexity 1 27 0 720 231 30 10 chr3 9636985 9637184 -208399974 - L1MB8 LINE L1 -1 6177 5975 950 281 90 19 chr3 9637272 9637368 -208399790 - L1ME1 LINE L1 -2701 3514 3426 1690 180 7 3 chr3 9637368 9637662 -208399496 - AluSx SINE Alu -14 298 4 950 281 90 19 chr3 9637662 9638262 -208398896 - L1ME1 LINE L1 -2789 3426 2768 519 225 11 43 chr3 9638258 9638445 -208398713 - L1ME1 LINE L1 -5263 1133 953 * 253 133 67 0 chr3 9638469 9638514 -208398644 - MLT1E2 LTR MaLR -42 584 537 683 216 119 38 chr3 9638525 9638710 -208398448 - MLT1E2 LTR MaLR -365 261 62 634 314 101 62 chr3 9638805 9639581 -208397577 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9639983 9640066 -208397092 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9640626 9640810 -208396348 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9640816 9640905 -208396253 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9640923 9641037 -208396121 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9641273 9641389 -208395769 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9641389 9641564 -208395594 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9641895 9642067 -208395091 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9642067 9642363 -208394795 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9642363 9642699 -208394459 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9643308 9643395 -208393763 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9643474 9643522 -208393636 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9643539 9643624 -208393534 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9644938 9645073 -208392085 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9645585 9645791 -208391367 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9645969 9646062 -208391096 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9646082 9646200 -208390958 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9646257 9646285 -208390873 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9646310 9646340 -208390818 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9646480 9646599 -208390559 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9647839 9647895 -208389263 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9649885 9650011 -208387147 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9653076 9653163 -208383995 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9653650 9653950 -208383208 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9654866 9655096 -208382062 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9655993 9656186 -208380972 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9656392 9656426 -208380732 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9656427 9656496 -208380662 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9656613 9656731 -208380427 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9656745 9656825 -208380333 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9656825 9656898 -208380260 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9656902 9657769 -208379389 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9657779 9657838 -208379320 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9658147 9658178 -208378980 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9659170 9659237 -208377921 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9659291 9659905 -208377253 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9659905 9660196 -208376962 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9660222 9660447 -208376711 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9660808 9661048 -208376110 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9661295 9661518 -208375640 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9662106 9662463 -208374695 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9662671 9662700 -208374458 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9662809 9663105 -208374053 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9663423 9663725 -208373433 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9663928 9663986 -208373172 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9664633 9664677 -208372481 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9665193 9665240 -208371918 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9665466 9665607 -208371551 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9665611 9665772 -208371386 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9665906 9666089 -208371069 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9666100 9666272 -208370886 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9666339 9666399 -208370759 - L2 LINE L2 -218 3054 2997 26 74 0 0 chr3 9667715 9667769 -208369389 + AT_rich Low_complexity Low_complexity 1 54 0 3179 71 7 0 chr3 9667953 9668378 -208368780 - L1PA10 LINE L1 0 6168 5741 989 93 42 3 chr3 9668379 9668571 -208368587 + L1P4 LINE L1 5254 5430 -738 297 0 0 0 chr3 9668745 9668778 -208368380 + (TG)n Simple_repeat Simple_repeat 2 34 0 800 230 0 0 chr3 9669222 9669387 -208367771 + FRAM SINE Alu 1 164 -12 351 298 132 38 chr3 9669515 9670062 -208367096 - L1ME4a LINE L1 -204 5917 5320 35 78 0 0 chr3 9670084 9670161 -208366997 + AT_rich Low_complexity Low_complexity 1 77 0 374 253 24 0 chr3 9671095 9671178 -208365980 + L3 LINE CR1 1393 1477 -100 218 262 0 0 chr3 9671367 9671409 -208365749 + MIR SINE MIR 78 119 -89 2270 120 0 0 chr3 9671413 9671721 -208365437 - AluSg SINE Alu -2 308 1 2542 198 2 10 chr3 9671926 9672416 -208364742 - MER66B LTR ERV1 0 486 1 1158 161 55 0 chr3 9672773 9672919 -208364239 - L1MA9 LINE L1 -2 6310 6145 234 62 0 0 chr3 9672919 9672951 -208364207 + (TG)n Simple_repeat Simple_repeat 1 32 0 1158 161 55 0 chr3 9672951 9673040 -208364118 - L1MA9 LINE L1 -167 6145 6062 1675 93 4 39 chr3 9673076 9673333 -208363825 + L1PA6 LINE L1 5907 6154 0 249 33 0 0 chr3 9673594 9673624 -208363534 + (TAA)n Simple_repeat Simple_repeat 1 30 0 285 258 89 57 chr3 9673647 9673771 -208363387 - MIR SINE MIR -44 218 91 32510 38 0 0 chr3 9674056 9678968 -208358190 - L1PA3 LINE L1 -3 6152 1239 313 354 31 15 chr3 9678968 9679098 -208358060 + LTR67 LTR ERVL 110 241 -316 315 284 9 0 chr3 9679229 9679338 -208357820 + LTR67 LTR ERVL 435 544 -13 318 50 0 0 chr3 9679804 9679844 -208357314 + (ATG)n Simple_repeat Simple_repeat 2 41 0 206 338 188 6 chr3 9679853 9680013 -208357145 - MIR SINE MIR -10 252 64 336 200 0 0 chr3 9681356 9681436 -208355722 + (TA)n Simple_repeat Simple_repeat 2 81 0 434 287 54 0 chr3 9682285 9682414 -208354744 - MIR SINE MIR -68 194 59 803 209 70 0 chr3 9684071 9684243 -208352915 + MER5A DNA MER1_type 4 187 -2 305 258 281 6 chr3 9684274 9684452 -208352706 + MIR SINE MIR 34 260 -2 645 304 25 21 chr3 9684727 9684964 -208352194 - LTR33 LTR ERVL -239 282 45 629 179 172 13 chr3 9685522 9685673 -208351485 + FRAM SINE Alu 2 176 0 290 317 63 0 chr3 9685766 9685908 -208351250 + MIR SINE MIR 55 205 -57 260 336 69 8 chr3 9685970 9686101 -208351057 - MIR SINE MIR 0 262 124 208 360 0 20 chr3 9686641 9686741 -208350417 - MIR SINE MIR -66 142 45 2432 82 0 28 chr3 9688141 9688459 -208348699 + AluSc SINE Alu 1 309 0 235 258 45 0 chr3 9688575 9688664 -208348494 + T-rich Low_complexity Low_complexity 4 96 0 288 0 0 0 chr3 9689674 9689706 -208347452 + (CA)n Simple_repeat Simple_repeat 2 33 0 469 305 97 26 chr3 9690343 9690838 -208346320 - L1ME LINE L1 -378 5784 5255 510 298 94 12 chr3 9691134 9691305 -208345853 + MIR SINE MIR 11 195 -67 368 314 66 62 chr3 9691450 9691547 -208345611 - L1ME LINE L1 -1306 4840 4745 1388 227 14 7 chr3 9691547 9691842 -208345316 - AluJo SINE Alu -15 297 1 368 314 66 62 chr3 9691842 9692778 -208344380 - L1ME LINE L1 -1401 4745 3803 338 275 169 38 chr3 9692797 9692957 -208344201 - MLT1A1 LTR MaLR 0 549 369 21 0 0 0 chr3 9693643 9693664 -208343494 + AT_rich Low_complexity Low_complexity 1 21 0 877 163 0 6 chr3 9693675 9693841 -208343317 - L1MA10 LINE L1 -3 6331 6167 710 199 8 0 chr3 9693897 9694028 -208343130 - FLAM_C SINE Alu -1 132 1 207 350 48 10 chr3 9694299 9694402 -208342756 - MIR3 SINE MIR -1 207 101 322 336 28 28 chr3 9695283 9695426 -208341732 - MIR3 SINE MIR -61 147 5 260 363 44 0 chr3 9696261 9696374 -208340784 + L2 LINE L2 3155 3272 0 396 298 29 41 chr3 9697072 9697243 -208339915 - MLT1J2 LTR MaLR -3 447 279 474 252 9 0 chr3 9697444 9697555 -208339603 + FLAM_A SINE Alu 16 127 -15 217 299 13 0 chr3 9698047 9698124 -208339034 - L3b LINE CR1 -325 1258 1181 442 244 25 44 chr3 9699021 9699181 -208337977 + MER103 DNA DNA 8 164 -2 263 378 61 6 chr3 9699264 9699444 -208337714 - L3 LINE CR1 -13 1564 1375 2213 101 3 0 chr3 9701236 9701524 -208335634 - AluSg SINE Alu -21 289 1 314 308 140 0 chr3 9702941 9703048 -208334110 - L2 LINE L2 -1 3312 3191 1685 191 62 0 chr3 9703277 9703602 -208333556 - MLT1A1 LTR MaLR -20 345 1 602 262 107 5 chr3 9703868 9704055 -208333103 + MIR SINE MIR 56 261 -1 242 284 30 0 chr3 9704970 9705037 -208332121 - MIR SINE MIR -66 142 74 419 248 17 26 chr3 9705280 9705397 -208331761 + MIR SINE MIR 45 160 -102 264 305 0 0 chr3 9705410 9705469 -208331689 - L2 LINE L2 0 3272 3214 264 250 89 27 chr3 9705647 9705759 -208331399 + MIR SINE MIR 84 202 -60 1985 116 0 31 chr3 9706009 9706331 -208330827 - AluSx SINE Alu 0 313 1 24 32 0 0 chr3 9706584 9706615 -208330543 + AT_rich Low_complexity Low_complexity 1 31 0 1952 131 7 10 chr3 9707096 9707394 -208329764 + AluSx SINE Alu 1 297 -15 200 262 98 0 chr3 9708937 9708998 -208328160 - MIR SINE MIR -116 146 80 2084 142 3 0 chr3 9709827 9710138 -208327020 - AluSx SINE Alu 0 312 1 192 194 0 0 chr3 9710165 9710196 -208326962 + MIR SINE MIR 120 150 -58 281 339 34 17 chr3 9710817 9710935 -208326223 + MIR SINE MIR 34 143 -65 710 254 0 44 chr3 9711200 9711381 -208325777 + MER5B DNA MER1_type 1 173 -5 237 98 0 0 chr3 9712133 9712174 -208324984 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 826 337 78 20 chr3 9712372 9712862 -208324296 - L3 LINE CR1 -3 1574 1057 21 57 0 0 chr3 9712954 9712989 -208324169 + AT_rich Low_complexity Low_complexity 1 35 0 320 284 35 30 chr3 9713556 9713725 -208323433 - L1ME LINE L1 -295 5826 5657 2079 127 0 0 chr3 9713969 9714245 -208322913 + AluSx SINE Alu 1 276 -36 752 18 9 28 chr3 9714253 9714362 -208322796 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 616 284 60 18 chr3 9714485 9714816 -208322342 - L1ME4a LINE L1 -157 5964 5620 26 30 0 0 chr3 9715300 9715333 -208321825 + AT_rich Low_complexity Low_complexity 1 33 0 388 337 61 6 chr3 9716891 9717072 -208320086 + MIR SINE MIR 32 222 -40 274 294 25 68 chr3 9717987 9718150 -208319008 + MER117 DNA MER1_type 1 156 -41 342 302 40 16 chr3 9718528 9718654 -208318504 + L2 LINE L2 3158 3286 -27 210 300 0 0 chr3 9718694 9718744 -208318414 - L2 LINE L2 -82 3231 3182 2270 119 0 0 chr3 9719567 9719878 -208317280 - AluSx SINE Alu -1 311 1 211 302 157 34 chr3 9721436 9721704 -208315454 - L2 LINE L2 -630 2684 2384 281 278 26 26 chr3 9721759 9721874 -208315284 - MER103 DNA DNA -46 120 6 1932 232 58 109 chr3 9722312 9722481 -208314677 + LTR41 LTR ERVL 1 177 -596 2062 108 0 51 chr3 9722481 9722832 -208314326 - AluSx SINE Alu 0 312 1 1932 232 58 109 chr3 9722832 9723468 -208313690 + LTR41 LTR ERVL 177 765 -8 328 223 28 137 chr3 9723562 9723773 -208313385 - L1ME LINE L1 -296 5825 5638 471 332 55 14 chr3 9724677 9724897 -208312261 - MIR SINE MIR 0 262 34 24 32 0 0 chr3 9726899 9726930 -208310228 + AT_rich Low_complexity Low_complexity 1 31 0 2177 103 0 0 chr3 9726931 9727213 -208309945 - AluSc SINE Alu -27 282 1 269 246 0 0 chr3 9728538 9728607 -208308551 + (TTCA)n Simple_repeat Simple_repeat 4 72 0 216 269 58 39 chr3 9728998 9729102 -208308056 + MIR SINE MIR 108 213 -49 408 200 36 9 chr3 9729102 9729212 -208307946 - L1MA10 LINE L1 -3 6331 6219 5108 250 63 21 chr3 9729323 9731899 -208305259 - L1ME1 LINE L1 -281 5954 3277 * 43273 44 5 2 chr3 9731878 9738014 -208299144 - L1PA4 LINE L1 0 6224 70 2396 216 141 17 chr3 9738013 9738845 -208298313 - L1ME1 LINE L1 -2897 3318 2384 * 356 113 0 0 chr3 9738851 9738913 -208298245 - L1ME1 LINE L1 -4143 2253 2192 2088 262 74 15 chr3 9738919 9739526 -208297632 - L1ME1 LINE L1 -5649 747 96 188 0 0 69 chr3 9739526 9739555 -208297603 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2088 262 74 15 chr3 9739555 9739611 -208297547 - L1ME1 LINE L1 -6300 96 45 519 350 48 27 chr3 9739832 9740163 -208296995 - MLT1J2 LTR MaLR 0 450 113 289 250 0 24 chr3 9740678 9740762 -208296396 + MIR SINE MIR 166 247 -15 1123 144 20 16 chr3 9740962 9741212 -208295946 - L1MA4A LINE L1 -56 6247 6017 412 308 151 0 chr3 9741472 9741657 -208295501 + MIR SINE MIR 50 262 0 239 250 65 28 chr3 9741758 9741866 -208295292 + MIR SINE MIR 113 224 -38 186 43 0 0 chr3 9741992 9742015 -208295143 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2117 111 7 3 chr3 9742077 9742375 -208294783 + AluSx SINE Alu 1 299 -13 1885 171 3 0 chr3 9742386 9742679 -208294479 + AluSg SINE Alu 1 294 -16 191 365 24 0 chr3 9744588 9744673 -208292485 - L2 LINE L2 -47 3225 3139 225 287 98 0 chr3 9744820 9744835 -208292323 - L1MA10 LINE L1 -3 6331 6317 911 233 93 85 chr3 9744835 9744891 -208292267 - L1ME2 LINE L1 -8 6154 6100 198 103 0 0 chr3 9744891 9744920 -208292238 + (TG)n Simple_repeat Simple_repeat 2 30 0 911 233 93 85 chr3 9744920 9745390 -208291768 - L1ME2 LINE L1 -62 6100 5617 446 284 57 7 chr3 9745916 9746057 -208291101 - MIR SINE MIR -18 244 97 24 0 0 0 chr3 9746146 9746170 -208290988 + AT_rich Low_complexity Low_complexity 1 24 0 2356 320 127 25 chr3 9747236 9748888 -208288270 + L2 LINE L2 47 1865 -1449 190 289 134 35 chr3 9748976 9749118 -208288040 + L2 LINE L2 3158 3313 0 423 250 62 0 chr3 9749465 9749577 -208287581 - MIR SINE MIR -142 120 2 608 197 142 0 chr3 9750304 9750431 -208286727 + FRAM SINE Alu 2 146 -30 403 211 65 16 chr3 9750492 9750615 -208286543 + MER104 DNA Tc2 40 168 -12 1064 190 23 31 chr3 9750988 9751246 -208285912 - MLT1A1 LTR MaLR 0 365 110 1968 138 0 52 chr3 9752133 9752458 -208284700 - AluJb SINE Alu -4 308 1 195 379 35 0 chr3 9752849 9752936 -208284222 + L3 LINE CR1 1468 1557 -20 438 298 61 33 chr3 9753631 9753812 -208283346 + MIR SINE MIR 12 197 -65 246 83 0 0 chr3 9753875 9753911 -208283247 - Alu SINE Alu -94 81 46 1769 173 3 22 chr3 9754000 9754318 -208282840 - AluJo SINE Alu 0 312 1 220 167 0 0 chr3 9754639 9754681 -208282477 + MER5B DNA MER1_type 1 42 -136 1401 211 82 39 chr3 9754846 9755286 -208281872 - MLT1C LTR MaLR -8 459 1 283 272 37 0 chr3 9755297 9755378 -208281780 + MIR SINE MIR 130 213 -49 375 248 20 0 chr3 9755699 9755800 -208281358 - Charlie8 DNA MER1_type -2238 179 77 535 262 0 14 chr3 9755817 9755962 -208281196 - MER63 DNA MER1_type -289 773 5 310 294 54 76 chr3 9756141 9756343 -208280815 - MIR SINE MIR -56 206 5 250 185 0 0 chr3 9757212 9757266 -208279892 + L1MC4 LINE L1 7986 8039 -3 23 54 0 0 chr3 9757301 9757338 -208279820 + AT_rich Low_complexity Low_complexity 1 37 0 659 326 83 42 chr3 9757344 9757521 -208279637 - L2 LINE L2 -511 2803 2635 2384 42 0 11 chr3 9757521 9757838 -208279320 + AluY SINE Alu 1 314 0 659 326 83 42 chr3 9757838 9757996 -208279162 - L2 LINE L2 -679 2635 2453 23 0 0 0 chr3 9757997 9758020 -208279138 + AT_rich Low_complexity Low_complexity 1 23 0 235 204 0 0 chr3 9758137 9758191 -208278967 - L1MC4 LINE L1 -3 8039 7986 559 289 17 8 chr3 9758192 9758427 -208278731 - L1MC4 LINE L1 -141 7901 7665 367 340 102 12 chr3 9759426 9759758 -208277400 - LTR16A LTR ERVL -88 362 1 259 359 90 12 chr3 9759793 9759960 -208277198 + MIR SINE MIR 22 201 -61 309 135 0 0 chr3 9760014 9760066 -208277092 + (TTA)n Simple_repeat Simple_repeat 3 54 0 291 291 60 82 chr3 9760102 9760236 -208276922 - L2 LINE L2 -1 3312 3182 234 189 0 84 chr3 9760238 9760333 -208276825 - L1MC4 LINE L1 -1347 6695 6609 2984 310 76 32 chr3 9760334 9762102 -208275056 - L2 LINE L2 -149 3164 1307 242 333 51 51 chr3 9762205 9762322 -208274836 + MIR3 SINE MIR 44 160 -48 260 157 8 164 chr3 9762361 9762495 -208274663 + MER112 DNA MER1_type 45 157 -103 239 274 95 0 chr3 9762807 9762902 -208274256 + MER102a DNA MER1_type 80 183 -147 238 276 0 31 chr3 9762902 9763000 -208274158 + MER102a DNA MER1_type 236 330 0 300 111 0 0 chr3 9764174 9764228 -208272930 + (TG)n Simple_repeat Simple_repeat 2 55 0 744 249 57 75 chr3 9764802 9765276 -208271882 + MLT1C LTR MaLR 6 626 0 468 118 13 0 chr3 9766550 9766626 -208270532 + MADE1 DNA Mariner 4 80 0 213 180 0 0 chr3 9766939 9766989 -208270169 + CT-rich Low_complexity Low_complexity 3 52 0 4138 142 7 7 chr3 9768518 9769217 -208267941 + L1PA16 LINE L1 5392 6090 -76 1333 272 49 32 chr3 9769341 9769834 -208267324 - L1ME1 LINE L1 -44 6122 5622 2536 96 53 2 chr3 9771902 9772296 -208264862 - L1MA1 LINE L1 0 6302 5889 352 317 49 28 chr3 9772388 9772530 -208264628 - MIR3 SINE MIR -63 145 1 610 187 0 0 chr3 9772759 9772882 -208264276 - L1M3 LINE L1 -677 5491 5369 1422 138 6 99 chr3 9772882 9773216 -208263942 + L1MA10 LINE L1 6018 6320 -14 304 311 82 8 chr3 9773648 9773770 -208263388 + L2 LINE L2 3141 3271 -1 230 317 20 20 chr3 9773875 9773976 -208263182 + CT-rich Low_complexity Low_complexity 3 103 0 752 290 143 35 chr3 9774059 9774700 -208262458 - L2 LINE L2 -32 3281 2563 2367 61 0 42 chr3 9774819 9775132 -208262026 - AluY SINE Alu -11 300 1 241 254 56 0 chr3 9775811 9775882 -208261276 + MER103 DNA DNA 26 100 -66 184 333 51 26 chr3 9776173 9776251 -208260907 - MIR SINE MIR -113 149 70 393 315 112 44 chr3 9776469 9776720 -208260438 + L3 LINE CR1 787 1054 -523 835 196 0 0 chr3 9777746 9777894 -208259264 + FRAM SINE Alu 1 148 -28 249 108 0 0 chr3 9777896 9777933 -208259225 + (CATA)n Simple_repeat Simple_repeat 1 37 0 1621 140 42 30 chr3 9778444 9778780 -208258378 - L1MA9 LINE L1 0 6312 5973 829 309 64 40 chr3 9779285 9779786 -208257372 - LTR33 LTR ERVL -2 519 7 * 2218 112 27 25 chr3 9779783 9780149 -208257009 - THE1C LTR MaLR -8 367 1 324 339 97 27 chr3 9780452 9780638 -208256520 - L2 LINE L2 -643 2671 2473 227 333 43 0 chr3 9781766 9781859 -208255299 + MLT1I LTR MaLR 55 151 -258 831 250 4 44 chr3 9782031 9782259 -208254899 - MER58A DNA MER1_type -5 219 1 268 161 81 16 chr3 9782259 9782319 -208254839 + MLT1I LTR MaLR 342 405 -4 1977 141 0 0 chr3 9782881 9783171 -208253987 - AluY SINE Alu -21 290 1 2536 121 5 3 chr3 9784116 9784488 -208252670 - THE1C LTR MaLR 0 375 3 9413 119 40 48 chr3 9784490 9784681 -208252477 - THE1C-int LTR MaLR 0 1580 1389 2055 121 3 0 chr3 9784681 9784963 -208252195 + AluSq SINE Alu 21 303 -10 9413 119 40 48 chr3 9784963 9786365 -208250793 - THE1C-int LTR MaLR -191 1389 1 2506 106 3 5 chr3 9786368 9786737 -208250421 - THE1C LTR MaLR -7 368 1 1983 144 34 0 chr3 9786992 9787162 -208249996 - AluSx SINE Alu -9 303 117 201 39 0 0 chr3 9787162 9787188 -208249970 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1983 144 34 0 chr3 9787188 9787308 -208249850 - AluSx SINE Alu -195 117 3 451 309 121 12 chr3 9787436 9787685 -208249473 - MLT1I LTR MaLR -28 381 106 1321 167 0 26 chr3 9787973 9788200 -208248958 + AluJb SINE Alu 87 307 -5 312 273 11 23 chr3 9789329 9789417 -208247741 - L2 LINE L2 -21 3292 3206 3687 165 14 26 chr3 9789446 9790216 -208246942 + L1MA7 LINE L1 5530 6290 -1 1669 275 29 13 chr3 9790568 9791092 -208246066 - MLT1F LTR MaLR -10 532 1 425 302 213 22 chr3 9792669 9792894 -208244264 - MLT1K LTR MaLR -287 301 34 314 329 27 32 chr3 9793942 9794132 -208243026 + MIR SINE MIR 2 190 -55 220 259 49 25 chr3 9795733 9795814 -208241344 + MIR SINE MIR 124 206 -56 248 258 75 33 chr3 9795877 9795997 -208241161 - L3b LINE CR1 -171 1412 1288 413 258 158 0 chr3 9796101 9796265 -208240893 - MIR SINE MIR -10 252 63 1027 173 14 133 chr3 9796874 9796995 -208240163 - MER31A LTR ERV1 -135 350 216 1772 159 0 20 chr3 9796995 9797290 -208239868 + AluSx SINE Alu 4 292 -20 1027 173 14 133 chr3 9797290 9797567 -208239591 - MER31A LTR ERV1 -269 216 11 437 332 24 67 chr3 9797821 9798074 -208239084 + MIR SINE MIR 6 247 -15 435 201 135 91 chr3 9799261 9799567 -208237591 + MER39 LTR ERV1 1 456 -251 1452 224 7 0 chr3 9799582 9799863 -208237295 - AluJo SINE Alu -29 283 1 483 234 50 66 chr3 9799873 9800144 -208237014 + MER39 LTR ERV1 441 560 -5 493 200 104 7 chr3 9800148 9800283 -208236875 - L1MC5 LINE L1 -102 7859 7712 23 0 0 0 chr3 9800327 9800350 -208236808 + AT_rich Low_complexity Low_complexity 1 23 0 519 145 8 113 chr3 9800463 9800587 -208236571 + FLAM_A SINE Alu 6 116 -26 347 239 59 108 chr3 9800617 9801006 -208236152 - L1MC5 LINE L1 -419 7542 7173 182 36 0 36 chr3 9801140 9801168 -208235990 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1710 137 99 4 chr3 9801176 9801439 -208235719 - AluSx SINE Alu -24 288 1 278 326 139 0 chr3 9801519 9801605 -208235553 + L2 LINE L2 3121 3218 -54 1708 95 110 215 chr3 9801628 9802164 -208234994 + LTR12 LTR ERV1 1 480 -234 247 270 0 0 chr3 9802187 9802250 -208234908 + (TGAA)n Simple_repeat Simple_repeat 4 66 0 2220 226 78 4 chr3 9802304 9802831 -208234327 - MLT1F1 LTR MaLR -1 566 1 282 343 0 40 chr3 9802947 9803046 -208234112 + MIR SINE MIR 47 141 -67 1742 195 88 19 chr3 9803047 9803478 -208233680 - LOR1b LTR ERV1 0 461 1 413 268 168 11 chr3 9803520 9803710 -208233448 - MIR SINE MIR 0 262 43 365 311 155 0 chr3 9803744 9803905 -208233253 + MER5A DNA MER1_type 4 189 0 496 254 34 40 chr3 9804433 9804610 -208232548 - MER5B DNA MER1_type -2 176 1 937 172 63 34 chr3 9804845 9805113 -208232045 - MER33 DNA MER1_type -1 323 48 2036 127 0 3 chr3 9805638 9805930 -208231228 + AluSx SINE Alu 1 291 -21 1472 160 43 0 chr3 9806044 9806300 -208230858 - L1MC1 LINE L1 -92 6241 5975 1149 102 25 0 chr3 9806813 9806970 -208230188 - AluSc SINE Alu -148 161 1 1108 148 0 6 chr3 9807044 9807227 -208229931 + L1MC1 LINE L1 5860 6041 -292 193 276 150 39 chr3 9807286 9807413 -208229745 - MER5A DNA MER1_type 0 189 49 204 369 15 0 chr3 9808594 9808659 -208228499 - L2 LINE L2 0 3272 3207 1788 170 10 0 chr3 9808869 9809169 -208227989 + AluJb SINE Alu 1 303 -9 228 67 0 0 chr3 9809180 9809210 -208227948 + (CA)n Simple_repeat Simple_repeat 2 31 0 858 190 52 82 chr3 9809288 9809556 -208227602 - ORSL DNA AcHobo 0 275 16 2297 200 138 30 chr3 9809603 9810313 -208226845 - LTR48 LTR ERV1 0 787 1 673 257 137 8 chr3 9810333 9810631 -208226527 - MLT1C LTR MaLR -6 461 59 1641 213 52 54 chr3 9811674 9812176 -208224982 - MLT1D LTR MaLR -2 503 3 189 375 81 21 chr3 9813691 9813926 -208223232 + L2 LINE L2 2806 3054 -218 306 325 66 13 chr3 9814114 9814265 -208222893 + Charlie8 DNA MER1_type 107 265 -2152 286 255 142 9 chr3 9814896 9815002 -208222156 + L2 LINE L2 3138 3257 -15 650 207 67 56 chr3 9815324 9815503 -208221655 + L1MEc LINE L1 44 224 -6172 1921 240 27 34 chr3 9815506 9815734 -208221424 + L1ME1 LINE L1 5371 5599 -579 3278 163 28 36 chr3 9815734 9815845 -208221313 + L1MB3 LINE L1 5513 5623 -560 2181 136 7 0 chr3 9815845 9816155 -208221003 + AluSx SINE Alu 1 312 0 3278 163 28 36 chr3 9816155 9816717 -208220441 + L1MB3 LINE L1 5623 6181 -2 1921 240 27 34 chr3 9816717 9817339 -208219819 + L1ME1 LINE L1 5599 6177 -1 1667 51 0 5 chr3 9818230 9818454 -208218704 - AluY SINE Alu 0 309 87 283 237 40 26 chr3 9818607 9818683 -208218475 + L2 LINE L2 3179 3255 -17 332 253 61 0 chr3 9819197 9819296 -208217862 + MIR SINE MIR 158 262 0 189 294 199 41 chr3 9819561 9819707 -208217451 - MIR3 SINE MIR -10 198 30 1557 233 85 21 chr3 9819750 9820187 -208216971 - MLT1C LTR MaLR -2 465 1 22 56 0 0 chr3 9820187 9820223 -208216935 + AT_rich Low_complexity Low_complexity 1 36 0 482 252 18 0 chr3 9820532 9820643 -208216515 - MER81 DNA DNA -1 113 1 275 303 50 82 chr3 9821012 9821202 -208215956 - MER5B DNA MER1_type -5 173 1 221 100 50 0 chr3 9821344 9821384 -208215774 + (CATA)n Simple_repeat Simple_repeat 2 43 0 557 280 42 26 chr3 9822728 9822921 -208214237 - MIR SINE MIR -8 254 59 22 0 0 0 chr3 9823520 9823542 -208213616 + AT_rich Low_complexity Low_complexity 1 22 0 288 152 0 0 chr3 9824083 9824129 -208213029 + MADE1 DNA Mariner 1 46 -34 691 266 138 9 chr3 9824148 9824366 -208212792 + MIR SINE MIR 17 262 0 240 224 12 106 chr3 9825550 9825635 -208211523 - MIR SINE MIR -97 165 89 21 0 0 0 chr3 9825679 9825700 -208211458 + AT_rich Low_complexity Low_complexity 1 21 0 802 218 63 11 chr3 9825730 9825904 -208211254 + MER5A DNA MER1_type 7 189 0 21 0 0 0 chr3 9826171 9826192 -208210966 + AT_rich Low_complexity Low_complexity 1 21 0 181 340 0 0 chr3 9826791 9826838 -208210320 + L2 LINE L2 3223 3269 -3 2201 105 0 3 chr3 9827132 9827426 -208209732 - AluY SINE Alu -18 293 1 323 283 22 0 chr3 9827506 9827598 -208209560 + MER5A DNA MER1_type 13 106 -83 1956 140 13 3 chr3 9827624 9827924 -208209234 + AluJb SINE Alu 1 303 -9 1335 241 52 31 chr3 9828032 9828476 -208208682 - L1ME1 LINE L1 -88 6078 5626 2816 209 55 40 chr3 9828483 9829242 -208207916 + MER21B LTR ERV1 1 857 -6 3167 239 78 41 chr3 9829301 9830443 -208206715 - L1MEc LINE L1 -5176 1220 37 253 293 27 0 chr3 9830585 9830660 -208206498 - L3 LINE CR1 -681 896 820 634 176 9 0 chr3 9830692 9830800 -208206358 - FLAM_A SINE Alu -32 110 2 484 313 178 29 chr3 9830802 9831150 -208206008 - L3 LINE CR1 -747 830 431 3476 209 35 26 chr3 9832261 9833095 -208204063 - L1MA9 LINE L1 -208 6104 5264 715 230 51 55 chr3 9833908 9834125 -208203033 + MER58A DNA MER1_type 1 216 -8 409 347 7 0 chr3 9834256 9834403 -208202755 - MIR3 SINE MIR -40 168 21 21 36 0 0 chr3 9835118 9835146 -208202012 + AT_rich Low_complexity Low_complexity 1 28 0 1324 137 140 47 chr3 9835416 9835737 -208201421 - L1MA8 LINE L1 -1 6290 5940 188 231 0 0 chr3 9835934 9835973 -208201185 - L2 LINE L2 -5 3308 3270 1971 158 49 6 chr3 9836037 9836386 -208200772 - THE1B LTR MaLR 0 364 1 200 264 14 111 chr3 9836574 9836718 -208200440 - L2 LINE L2 -287 3026 2897 278 306 75 50 chr3 9836775 9836935 -208200223 - L2 LINE L2 -527 2787 2624 211 298 125 17 chr3 9837177 9837305 -208199853 - MIR SINE MIR -63 145 11 29 70 0 0 chr3 9837833 9837890 -208199268 + AT_rich Low_complexity Low_complexity 1 57 0 25 31 0 0 chr3 9838762 9838794 -208198364 + AT_rich Low_complexity Low_complexity 1 32 0 2414 239 85 27 chr3 9839217 9840984 -208196174 - L1ME1 LINE L1 -4 6231 4367 286 169 68 40 chr3 9841074 9841222 -208195936 + (ATATG)n Simple_repeat Simple_repeat 3 154 0 587 231 92 35 chr3 9841245 9841527 -208195631 - L1ME1 LINE L1 -1968 4247 3950 293 80 0 20 chr3 9841536 9841586 -208195572 + (TC)n Simple_repeat Simple_repeat 2 50 0 403 307 28 39 chr3 9841619 9841798 -208195360 - L1ME1 LINE L1 -6040 356 180 276 30 0 0 chr3 9842278 9842301 -208194857 + (TG)n Simple_repeat Simple_repeat 1 56 0 276 30 0 0 chr3 9842301 9842334 -208194824 + (TG)n Simple_repeat Simple_repeat 2 34 0 1814 175 0 0 chr3 9842359 9842644 -208194514 - AluSx SINE Alu -27 285 1 4562 62 10 0 chr3 9845406 9845991 -208191167 - LTR10C LTR ERV1 0 591 1 1674 209 11 15 chr3 9846414 9846789 -208190369 + MLT1A1 LTR MaLR 3 359 -6 382 320 128 45 chr3 9847163 9847500 -208189658 + MLT1J2 LTR MaLR 80 444 -6 573 244 124 10 chr3 9848120 9848321 -208188837 - MIR SINE MIR -2 260 37 300 308 75 38 chr3 9848554 9848713 -208188445 - MIR SINE MIR -51 211 47 752 134 0 47 chr3 9848785 9848912 -208188246 + HERVK LTR ERVK 5384 5504 -1739 310 109 36 18 chr3 9848902 9848957 -208188201 + Harlequin LTR ERV1 557 612 -6284 * 21 0 0 0 chr3 9850296 9850317 -208186841 + AT_rich Low_complexity Low_complexity 1 21 0 475 289 69 23 chr3 9850695 9850868 -208186290 - MLT1J1 LTR MaLR -2 444 264 230 28 0 56 chr3 9850881 9850917 -208186241 + (TTTTA)n Simple_repeat Simple_repeat 5 38 0 2007 143 19 19 chr3 9850924 9851287 -208185871 - L1PB1 LINE L1 -8 6143 5781 310 308 0 11 chr3 9851291 9851382 -208185776 - L1MC4 LINE L1 -1339 6703 6614 4165 158 8 1 chr3 9851383 9852644 -208184514 - L1P5 LINE L1 -360 5791 4523 7741 207 12 6 chr3 9852644 9854373 -208182785 + L1P5 LINE L1 2777 4514 -1632 644 348 43 3 chr3 9854373 9854655 -208182503 - MLT1J1 LTR MaLR -153 293 1 351 335 48 44 chr3 9855598 9855846 -208181312 - MLT1K LTR MaLR -14 574 326 26 30 0 0 chr3 9855876 9855909 -208181249 + AT_rich Low_complexity Low_complexity 1 33 0 1293 269 81 9 chr3 9855921 9856356 -208180802 - LTR33 LTR ERVL -19 502 37 183 366 0 14 chr3 9856898 9856969 -208180189 + L2 LINE L2 3201 3270 -2 22 35 0 0 chr3 9858592 9858621 -208178537 + AT_rich Low_complexity Low_complexity 1 29 0 1731 156 3 26 chr3 9859223 9859530 -208177628 + AluJb SINE Alu 1 300 -12 23 33 0 0 chr3 9860898 9860928 -208176230 + AT_rich Low_complexity Low_complexity 1 30 0 400 287 147 7 chr3 9860963 9861113 -208176045 - MIR SINE MIR -44 218 48 838 246 88 24 chr3 9861267 9861564 -208175594 + MER5C DNA MER1_type 7 322 -2 441 0 0 0 chr3 9862320 9862369 -208174789 + (TG)n Simple_repeat Simple_repeat 2 50 0 2075 98 18 0 chr3 9862372 9862649 -208174509 - AluSx SINE Alu -30 282 1 219 211 19 0 chr3 9862882 9862934 -208174224 - L2 LINE L2 -15 3257 3205 316 226 29 78 chr3 9863052 9863091 -208174067 - Charlie7 DNA MER1_type -2515 97 58 1695 154 49 35 chr3 9863091 9863461 -208173697 + THE1C LTR MaLR 1 375 0 316 226 29 78 chr3 9863461 9863523 -208173635 - Charlie7 DNA MER1_type -2554 58 1 6953 56 11 0 chr3 9863579 9864558 -208172600 + L1PA7 LINE L1 5166 6154 0 726 179 12 49 chr3 9864739 9864901 -208172257 - MER58B DNA MER1_type 0 341 186 390 286 191 0 chr3 9865064 9865211 -208171947 + MER5A DNA MER1_type 13 187 -2 189 308 103 0 chr3 9866097 9866175 -208170983 + MIR SINE MIR 98 183 -79 23 0 0 0 chr3 9866338 9866361 -208170797 + AT_rich Low_complexity Low_complexity 1 23 0 246 289 0 0 chr3 9866686 9866738 -208170420 + L2 LINE L2 3209 3260 -12 188 424 11 5 chr3 9867184 9867368 -208169790 + L2 LINE L2 2177 2361 -953 307 268 22 94 chr3 9867422 9867560 -208169598 - L1MC4 LINE L1 -1307 6735 6608 196 368 40 0 chr3 9867655 9867731 -208169427 + L2 LINE L2 3235 3313 0 13829 143 36 16 chr3 9867961 9870329 -208166829 + Tigger1 DNA MER2_type 1 2417 -1 694 321 178 33 chr3 9870431 9871076 -208166082 - L2 LINE L2 -1 3312 2575 536 244 179 26 chr3 9871079 9871235 -208165923 + MER5A DNA MER1_type 7 186 -3 696 315 68 0 chr3 9871258 9871537 -208165621 - L2 LINE L2 -747 2567 2270 21 36 0 0 chr3 9873141 9873169 -208163989 + AT_rich Low_complexity Low_complexity 1 28 0 207 256 61 37 chr3 9874585 9874667 -208162491 + MIR SINE MIR 120 203 -59 326 282 107 10 chr3 9874785 9874888 -208162270 + MIR SINE MIR 37 149 -113 26 52 0 17 chr3 9876648 9876680 -208160478 + AT_rich Low_complexity Low_complexity 1 33 -24 2074 126 0 0 chr3 9876680 9876966 -208160192 - AluSx SINE Alu -26 286 1 26 52 0 17 chr3 9876966 9876991 -208160167 + AT_rich Low_complexity Low_complexity 33 57 0 192 77 0 0 chr3 9878035 9878061 -208159097 + (A)n Simple_repeat Simple_repeat 1 26 0 194 0 39 0 chr3 9878815 9878841 -208158317 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 866 173 0 0 chr3 9878846 9878985 -208158173 - AluY SINE Alu -26 285 147 292 309 49 16 chr3 9879169 9879292 -208157866 + MIR SINE MIR 17 143 -119 1531 169 81 0 chr3 9879627 9879888 -208157270 + AluJo SINE Alu 3 284 -28 186 143 0 0 chr3 9879892 9879927 -208157231 + (CAA)n Simple_repeat Simple_repeat 2 36 0 231 228 35 0 chr3 9880035 9880092 -208157066 - MIR SINE MIR -66 142 84 201 39 0 0 chr3 9880143 9880169 -208156989 + (TG)n Simple_repeat Simple_repeat 1 26 0 2240 110 3 0 chr3 9880221 9880530 -208156628 + AluSg SINE Alu 1 310 0 599 287 74 10 chr3 9880852 9881054 -208156104 - L2 LINE L2 -1 3312 3098 193 381 31 21 chr3 9881281 9881378 -208155780 - MIR SINE MIR -90 118 21 646 324 42 0 chr3 9881470 9881683 -208155475 + MIR SINE MIR 28 249 -13 1664 279 107 34 chr3 9883019 9883693 -208153465 - MER21B LTR ERV1 -124 739 17 194 350 43 14 chr3 9884536 9884676 -208152482 + L2 LINE L2 1876 2019 -1295 579 195 47 0 chr3 9886007 9886309 -208150849 + (TA)n Simple_repeat Simple_repeat 1 316 0 515 235 24 0 chr3 9886322 9886488 -208150670 + (TATATG)n Simple_repeat Simple_repeat 5 174 0 391 266 29 0 chr3 9886544 9886717 -208150441 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 * 479 128 45 45 chr3 9886705 9886884 -208150274 + (TA)n Simple_repeat Simple_repeat 2 180 0 2668 229 61 20 chr3 9887456 9888165 -208148993 - L1ME2 LINE L1 -8 6090 5353 431 257 132 21 chr3 9888186 9888494 -208148664 - L1ME2 LINE L1 -3773 2325 2001 209 184 0 13 chr3 9888599 9888675 -208148483 + (TA)n Simple_repeat Simple_repeat 2 76 0 1304 285 69 67 chr3 9888678 9890077 -208147081 - L1ME2 LINE L1 -4319 1942 494 913 99 13 13 chr3 9890544 9890696 -208146462 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 879 198 0 64 chr3 9890810 9891012 -208146146 + MLT1A2 LTR MaLR 21 209 -165 189 74 0 0 chr3 9891047 9891074 -208146084 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 504 275 39 11 chr3 9891084 9891262 -208145896 + MLT1B LTR MaLR 192 374 0 409 325 27 32 chr3 9891549 9891737 -208145421 - MIR SINE MIR -75 187 1 23 33 0 0 chr3 9892705 9892735 -208144423 + AT_rich Low_complexity Low_complexity 1 30 0 418 38 0 0 chr3 9893095 9893148 -208144010 - L1PA6 LINE L1 0 6154 6102 182 308 115 13 chr3 9893736 9893814 -208143344 - L2 LINE L2 -3 3310 3225 371 287 8 54 chr3 9893953 9894082 -208143076 - L2 LINE L2 -1 3271 3149 210 261 0 0 chr3 9894102 9894148 -208143010 + L2 LINE L2 3264 3309 -4 235 307 53 18 chr3 9894561 9894675 -208142483 - L2 LINE L2 -1307 2007 1890 1937 132 22 0 chr3 9897142 9897415 -208139743 + AluSx SINE Alu 1 279 -33 231 36 0 0 chr3 9897415 9897443 -208139715 + (CA)n Simple_repeat Simple_repeat 1 28 0 267 336 69 8 chr3 9898123 9898254 -208138904 + MIR SINE MIR 124 262 0 291 317 63 0 chr3 9898316 9898458 -208138700 - MIR SINE MIR -57 205 55 625 179 172 13 chr3 9898551 9898702 -208138456 - FRAM SINE Alu 0 176 2 722 304 25 21 chr3 9899259 9899496 -208137662 + LTR33 LTR ERVL 45 282 -239 300 258 281 6 chr3 9899771 9899949 -208137209 - MIR SINE MIR -2 260 34 802 209 70 0 chr3 9899980 9900152 -208137006 - MER5A DNA MER1_type -2 187 4 441 287 54 0 chr3 9901809 9901938 -208135220 + MIR SINE MIR 59 194 -68 336 200 0 0 chr3 9902787 9902867 -208134291 + (TA)n Simple_repeat Simple_repeat 2 81 0 214 338 188 6 chr3 9904209 9904369 -208132789 + MIR SINE MIR 64 252 -10 318 50 0 0 chr3 9904378 9904418 -208132740 + (CAT)n Simple_repeat Simple_repeat 2 41 0 351 276 24 8 chr3 9904884 9905007 -208132151 - LTR67 LTR ERVL -13 544 420 351 354 31 15 chr3 9905125 9905255 -208131903 - LTR67 LTR ERVL -316 241 110 33437 38 4 0 chr3 9905255 9909957 -208127201 + L1PA3 LINE L1 1239 5953 -202 181 275 120 93 chr3 9910573 9910831 -208126327 - L2 LINE L2 -54 3259 2995 367 218 0 32 chr3 9910847 9910971 -208126187 + GA-rich Low_complexity Low_complexity 1 120 0 2095 105 3 3 chr3 9911704 9911989 -208125169 - AluSc SINE Alu -22 287 3 599 195 0 0 chr3 9912807 9912930 -208124228 - L1M3 LINE L1 -677 5491 5369 1450 138 6 99 chr3 9912930 9913264 -208123894 + L1MA10 LINE L1 6018 6320 -14 300 311 82 8 chr3 9913696 9913818 -208123340 + L2 LINE L2 3141 3271 -1 230 317 20 20 chr3 9913923 9914024 -208123134 + CT-rich Low_complexity Low_complexity 3 103 0 727 289 143 35 chr3 9914107 9914748 -208122410 - L2 LINE L2 -32 3281 2563 2172 120 0 0 chr3 9914867 9915167 -208121991 - AluY SINE Alu -11 300 1 210 303 13 13 chr3 9915222 9915298 -208121860 + L2 LINE L2 3188 3263 -9 2429 154 2 28 chr3 9915377 9915800 -208121358 - MSTB1 LTR MaLR -20 412 1 7855 67 22 4 chr3 9917347 9918463 -208118695 + L1P LINE L1 966 2102 -4044 390 222 56 93 chr3 9918468 9918630 -208118528 - MER31-int LTR ERV1 -216 4720 4565 714 130 19 0 chr3 9918646 9918754 -208118404 - MSTB1 LTR MaLR 0 432 323 22 0 0 0 chr3 9920412 9920434 -208116724 + AT_rich Low_complexity Low_complexity 1 22 0 198 265 0 20 chr3 9921080 9921129 -208116029 + L3b LINE CR1 1535 1582 -1 246 347 153 6 chr3 9922368 9922544 -208114614 + MIR SINE MIR 28 229 -33 * 637 265 28 84 chr3 9922524 9922773 -208114385 + MIR SINE MIR 18 252 -10 465 213 32 0 chr3 9923790 9923884 -208113274 + MER5A DNA MER1_type 9 105 -84 1973 126 3 10 chr3 9923901 9924203 -208112955 + AluSx SINE Alu 1 300 -12 1540 236 79 34 chr3 9924323 9924764 -208112394 - MLT1D LTR MaLR -44 461 1 758 296 17 17 chr3 9925247 9925487 -208111671 + MIR SINE MIR 13 252 -10 189 0 0 0 chr3 9925503 9925524 -208111634 + (TTA)n Simple_repeat Simple_repeat 1 21 0 252 0 0 0 chr3 9926388 9926416 -208110742 + (TG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr3 9926743 9926770 -208110388 + AT_rich Low_complexity Low_complexity 1 27 0 298 175 0 0 chr3 9926892 9926955 -208110203 - MER97c DNA MER1_type? -37 1053 991 716 158 15 8 chr3 9926963 9927096 -208110062 - MER97a DNA MER1_type? -561 333 200 681 256 63 29 chr3 9927108 9927315 -208109843 + MER58A DNA MER1_type 10 223 -1 612 235 60 0 chr3 9927315 9927464 -208109694 - MER97b DNA MER1_type? -848 205 48 198 67 0 0 chr3 9931506 9931517 -208105641 + (TAAAAA)n Simple_repeat Simple_repeat 1 11 -19 5011 45 0 0 chr3 9931517 9932121 -208105037 + L1PA5 LINE L1 5549 6152 -2 198 67 0 0 chr3 9932121 9932139 -208105019 + (TAAAAA)n Simple_repeat Simple_repeat 10 30 0 278 276 0 51 chr3 9932155 9932253 -208104905 + L2 LINE L2 3221 3313 0 256 364 119 7 chr3 9932299 9932442 -208104716 + MIR3 SINE MIR 16 174 -34 233 330 43 0 chr3 9932945 9933039 -208104119 - MIR SINE MIR -91 117 20 585 0 0 0 chr3 9933592 9933657 -208103501 + (TC)n Simple_repeat Simple_repeat 1 65 0 2102 124 36 30 chr3 9933896 9934258 -208102900 + THE1B LTR MaLR 1 364 0 289 308 226 0 chr3 9934542 9934688 -208102470 + MIR SINE MIR 65 243 -19 235 286 65 13 chr3 9934732 9934809 -208102349 + MIR3 SINE MIR 110 190 -18 24 32 0 0 chr3 9934809 9934840 -208102318 + AT_rich Low_complexity Low_complexity 1 31 0 2236 92 0 13 chr3 9934851 9935154 -208102004 + AluSx SINE Alu 1 299 -13 520 252 58 22 chr3 9936806 9936945 -208100213 + MER5A DNA MER1_type 14 157 -32 3702 261 96 38 chr3 9936945 9937616 -208099542 - L1M LINE L1 -840 5306 4675 180 0 0 0 chr3 9937616 9937636 -208099522 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3702 261 96 38 chr3 9937636 9938934 -208098224 - L1M LINE L1 -1471 4675 3137 457 287 9 0 chr3 9938934 9939049 -208098109 - FLAM_A SINE Alu -17 116 1 3702 261 96 38 chr3 9939049 9939606 -208097552 - L1M LINE L1 -3009 3137 2614 229 237 17 17 chr3 9939611 9939670 -208097488 + MER5A DNA MER1_type 130 188 -1 465 271 52 42 chr3 9940063 9940255 -208096903 + MIR SINE MIR 68 261 -1 481 292 55 24 chr3 9941749 9942003 -208095155 - L1MC4a LINE L1 -321 5800 5670 332 301 134 29 chr3 9942036 9942327 -208094831 - L1ME LINE L1 -394 5727 5391 302 325 53 33 chr3 9942913 9943064 -208094094 + L2 LINE L2 3160 3313 0 237 94 57 57 chr3 9944129 9944182 -208092976 - L1ME4a LINE L1 -2 6119 6067 23 78 0 0 chr3 9944753 9944804 -208092354 + AT_rich Low_complexity Low_complexity 1 51 0 2511 75 0 0 chr3 9945034 9945342 -208091816 - AluY SINE Alu -3 308 1 290 274 102 47 chr3 9945347 9945562 -208091596 - HAL1 LINE L1 0 2507 2281 269 256 26 17 chr3 9945627 9945744 -208091414 - HAL1 LINE L1 -347 2160 2043 345 285 34 53 chr3 9945930 9946137 -208091021 - HAL1 LINE L1 -710 1797 1595 697 257 171 71 chr3 9946348 9946896 -208090262 - HAL1 LINE L1 -916 1591 989 274 309 141 28 chr3 9946987 9947236 -208089922 - HAL1 LINE L1 -1632 875 599 2532 27 0 0 chr3 9947449 9947746 -208089412 - L1HS LINE L1 0 6155 5859 250 256 158 0 chr3 9948144 9948226 -208088932 - L1ME LINE L1 -519 5602 5508 335 219 126 60 chr3 9948346 9948497 -208088661 - L1ME LINE L1 -767 5379 5219 2188 121 0 3 chr3 9953700 9953997 -208083161 - AluSx SINE Alu -16 296 1 253 241 0 17 chr3 9954761 9954819 -208082339 + MLT1J LTR MaLR 113 169 -342 2229 108 23 0 chr3 9955026 9955331 -208081827 - AluSx SINE Alu 0 312 1 585 288 100 39 chr3 9955331 9955601 -208081557 + MLT1L LTR MaLR 316 605 -10 287 298 12 0 chr3 9955612 9955696 -208081462 + L2 LINE L2 3185 3269 -3 198 0 0 0 chr3 9956018 9956040 -208081118 + (GA)n Simple_repeat Simple_repeat 1 22 0 248 251 96 107 chr3 9956524 9956711 -208080447 - L2 LINE L2 0 3313 3129 2858 268 66 40 chr3 9956711 9957194 -208079964 - L1M4 LINE L1 -5245 1297 828 229 25 0 50 chr3 9957194 9957234 -208079924 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2858 268 66 40 chr3 9957234 9958013 -208079145 - L1M4 LINE L1 -5714 828 2 2174 298 80 58 chr3 9958016 9959317 -208077841 - L2 LINE L2 -175 3138 1824 242 340 35 42 chr3 9961354 9961498 -208075660 - L2 LINE L2 -237 3035 2893 632 245 57 38 chr3 9961942 9962232 -208074926 - L1ME3 LINE L1 -5 6165 5861 203 147 0 0 chr3 9962251 9962285 -208074873 + (TG)n Simple_repeat Simple_repeat 1 34 0 1477 212 36 34 chr3 9962289 9962675 -208074483 - MER39 LTR ERV1 -1 706 320 296 222 46 65 chr3 9962665 9962773 -208074385 - LTR48B LTR ERV1 -538 106 1 * 351 0 0 0 chr3 9962784 9962823 -208074335 + (TG)n Simple_repeat Simple_repeat 1 39 0 564 207 42 0 chr3 9962826 9962964 -208074194 - L1ME2 LINE L1 -279 5885 5739 2185 112 37 31 chr3 9964509 9964892 -208072266 - L1PB1 LINE L1 -5 6146 5762 564 284 73 32 chr3 9965026 9965355 -208071803 - LTR16A1 LTR ERVL 0 457 80 307 344 23 0 chr3 9965508 9965636 -208071522 - MERVL LTR ERVL -2634 2851 2721 287 256 49 77 chr3 9965679 9965849 -208071309 - MERVL LTR ERVL -2372 2624 2461 316 289 22 0 chr3 9966059 9966149 -208071009 - MERVL LTR ERVL -2639 2357 2266 844 283 129 37 chr3 9966150 9966553 -208070605 - MERVL LTR ERVL -2865 2131 1692 744 339 55 31 chr3 9966756 9967172 -208069986 - MERVL LTR ERVL -3835 1161 736 821 158 49 54 chr3 9967452 9967636 -208069522 - MER5A DNA MER1_type -6 183 1 419 248 20 10 chr3 9967636 9967737 -208069421 - LTR16A1 LTR ERVL -341 116 15 2047 109 49 0 chr3 9968668 9968952 -208068206 + AluSx SINE Alu 1 298 -14 362 294 112 18 chr3 9969011 9969181 -208067977 + L2 LINE L2 3112 3297 -16 191 170 21 0 chr3 9969464 9969511 -208067647 + GA-rich Low_complexity Low_complexity 4 51 0 230 349 63 32 chr3 9969798 9969924 -208067234 + MER5A DNA MER1_type 51 180 -9 406 353 47 26 chr3 9969946 9970178 -208066980 - MIR SINE MIR -6 256 20 21 36 0 0 chr3 9971715 9971743 -208065415 + AT_rich Low_complexity Low_complexity 1 28 0 200 300 8 42 chr3 9971824 9971944 -208065214 + (TATG)n Simple_repeat Simple_repeat 3 118 0 320 319 7 0 chr3 9971944 9972085 -208065073 - MER113 DNA MER1_type? -378 143 2 738 327 57 71 chr3 9972392 9972554 -208064604 + L2 LINE L2 2729 2892 -421 1984 145 42 31 chr3 9972554 9972913 -208064245 + THE1B LTR MaLR 1 363 -1 738 327 57 71 chr3 9972913 9973325 -208063833 + L2 LINE L2 2892 3313 0 215 376 0 0 chr3 9974064 9974165 -208062993 - L2 LINE L2 -706 2608 2508 1255 128 0 5 chr3 9974701 9974896 -208062262 + L1PB1 LINE L1 1 194 -6669 13359 163 69 4 chr3 9974898 9980152 -208057006 + L1PB1 LINE L1 905 6507 -360 252 0 0 0 chr3 9980218 9980246 -208056912 + (CA)n Simple_repeat Simple_repeat 2 29 0 2366 126 6 0 chr3 9980247 9980603 -208056555 + L1PB1 LINE L1 6508 6865 -2 22 0 0 0 chr3 9980603 9980625 -208056533 + AT_rich Low_complexity Low_complexity 1 22 0 2017 161 41 19 chr3 9982343 9982710 -208054448 - THE1C LTR MaLR 0 375 1 327 268 263 24 chr3 9983806 9984011 -208053147 - MIR SINE MIR -3 259 6 363 298 0 0 chr3 9984492 9984586 -208052572 - MER117 DNA MER1_type -35 162 69 700 273 11 32 chr3 9984687 9984874 -208052284 - MER5A DNA MER1_type -6 183 1 643 290 40 24 chr3 9984886 9985138 -208052020 + MIR SINE MIR 7 262 0 1817 146 69 0 chr3 9985328 9985616 -208051542 - AluJo SINE Alu -4 308 1 2857 112 14 0 chr3 9986193 9986613 -208050545 - L1PA13 LINE L1 0 6163 5738 21 36 0 0 chr3 9986613 9986641 -208050517 + AT_rich Low_complexity Low_complexity 1 28 0 2574 150 31 10 chr3 9986682 9987169 -208049989 + L1MA5 LINE L1 5802 6298 -2 1995 126 0 29 chr3 9987377 9987686 -208049472 - AluSx SINE Alu -12 300 1 311 276 181 29 chr3 9990007 9990217 -208046941 - MIR SINE MIR -5 257 16 303 273 201 19 chr3 9990599 9990753 -208046405 - MLT1J2 LTR MaLR -4 446 265 915 217 0 48 chr3 9990753 9990942 -208046216 + MER5A DNA MER1_type 9 188 -1 2499 111 67 7 chr3 9992339 9992743 -208044415 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr3 9993442 9993466 -208043692 + (A)n Simple_repeat Simple_repeat 1 24 0 1711 179 43 156 chr3 9993562 9994143 -208043015 + MLT2B3 LTR ERVL 1 509 -45 500 0 17 0 chr3 9994143 9994203 -208042955 + (CA)n Simple_repeat Simple_repeat 1 61 0 1711 179 43 156 chr3 9994203 9994243 -208042915 + MLT2B3 LTR ERVL 509 552 -2 2917 247 26 1 chr3 9994243 9994932 -208042226 + HERVL-B3 LTR ERVL 64 769 -4885 1205 248 8 0 chr3 9994932 9995178 -208041980 - ERVL LTR ERVL -5116 648 401 18710 174 20 14 chr3 9995180 9998400 -208038758 + HERVL-B3 LTR ERVL 811 4054 -1710 1993 154 0 3 chr3 9998400 9998705 -208038453 - AluJb SINE Alu -8 304 1 18710 174 20 14 chr3 9998705 9998793 -208038365 + HERVL-B3 LTR ERVL 4054 4140 -1624 695 232 0 96 chr3 9998807 9999017 -208038141 + MLT2B3 LTR ERVL 282 359 -94 396 0 0 0 chr3 9999023 9999067 -208038091 + (CA)n Simple_repeat Simple_repeat 1 44 0 31 58 0 0 chr3 9999095 9999147 -208038011 + AT_rich Low_complexity Low_complexity 1 52 0 259 167 0 0 chr3 9999157 9999205 -208037953 + MLT2B3 LTR ERVL 473 520 0 487 293 94 69 chr3 9999563 9999969 -208037189 + Charlie8 DNA MER1_type 3 418 -1999 262 204 0 0 chr3 10000047 10000101 -208037057 + Charlie8 DNA MER1_type 1360 1413 -1004 450 268 58 0 chr3 10000597 10000735 -208036423 - MER103 DNA DNA -4 162 17 2002 136 23 3 chr3 10000941 10001242 -208035916 + AluSx SINE Alu 4 310 -2 348 43 0 0 chr3 10001312 10001358 -208035800 + (TG)n Simple_repeat Simple_repeat 2 47 0 2141 102 7 16 chr3 10001436 10001739 -208035419 - AluSx SINE Alu -10 302 3 200 292 0 0 chr3 10001845 10001893 -208035265 + L2 LINE L2 3217 3264 -8 324 0 0 0 chr3 10002240 10002276 -208034882 + (TG)n Simple_repeat Simple_repeat 1 36 0 208 171 0 24 chr3 10002941 10002982 -208034176 + CT-rich Low_complexity Low_complexity 3 42 0 302 191 75 21 chr3 10003732 10003826 -208033332 - LTR67 LTR ERVL 0 557 459 180 0 0 0 chr3 10004444 10004464 -208032694 + (CA)n Simple_repeat Simple_repeat 2 21 0 1535 175 45 31 chr3 10004948 10005240 -208031918 + AluJo SINE Alu 1 296 -16 40 49 0 0 chr3 10005240 10005301 -208031857 + AT_rich Low_complexity Low_complexity 1 61 0 255 289 164 38 chr3 10005702 10005965 -208031193 - L1ME LINE L1 -451 5696 5401 337 316 78 54 chr3 10006070 10006443 -208030715 - L1ME LINE L1 -3451 2678 2297 23 68 0 0 chr3 10006599 10006643 -208030515 + AT_rich Low_complexity Low_complexity 1 44 0 317 330 117 61 chr3 10006958 10007348 -208029810 - L1ME LINE L1 -745 1745 1326 259 286 109 38 chr3 10007403 10007613 -208029545 - L1ME LINE L1 -4930 1189 965 261 243 0 0 chr3 10007750 10007820 -208029338 + (TA)n Simple_repeat Simple_repeat 1 70 0 306 389 25 33 chr3 10007884 10008128 -208029030 - L1ME LINE L1 -5389 730 489 344 307 62 64 chr3 10008190 10008548 -208028610 - L1ME LINE L1 -5758 361 5 239 153 0 68 chr3 10009043 10009102 -208028056 + GA-rich Low_complexity Low_complexity 4 58 0 3638 238 125 23 chr3 10009102 10010284 -208026874 + L1P LINE L1 1851 3210 -2936 297 0 0 0 chr3 10010284 10010317 -208026841 + (CA)n Simple_repeat Simple_repeat 2 34 0 3638 238 125 23 chr3 10010317 10010587 -208026571 + L1P LINE L1 3210 3451 -2695 5577 122 10 13 chr3 10010587 10011703 -208025455 + L1PA13 LINE L1 5036 6151 -12 204 191 24 0 chr3 10011741 10011783 -208025375 - MIR SINE MIR -61 147 105 408 323 107 15 chr3 10012286 10012549 -208024609 + Charlie8 DNA MER1_type 1 287 -2130 213 278 43 52 chr3 10012878 10012993 -208024165 + MIR SINE MIR 80 193 -69 280 370 106 68 chr3 10013967 10014289 -208022869 + L2 LINE L2 2920 3253 -19 315 71 0 0 chr3 10014331 10014373 -208022785 + (TG)n Simple_repeat Simple_repeat 1 42 0 342 287 166 36 chr3 10014625 10015175 -208021983 - L2 LINE L2 0 3313 2602 264 180 80 0 chr3 10015767 10015817 -208021341 - MIR3 SINE MIR -49 159 106 717 274 42 34 chr3 10016086 10016303 -208020855 - MIR SINE MIR -7 255 34 747 237 32 27 chr3 10016303 10016522 -208020636 + MER58A DNA MER1_type 1 220 -4 717 274 42 34 chr3 10016522 10016541 -208020617 - MIR SINE MIR -228 34 17 357 263 111 10 chr3 10016540 10016639 -208020519 - L2 LINE L2 -3 3310 3202 * 727 210 23 17 chr3 10016668 10016844 -208020314 - MER45A DNA AcHobo -1 177 1 754 283 8 53 chr3 10017169 10017351 -208019807 + MIR SINE MIR 8 178 -84 2197 94 0 7 chr3 10017351 10017639 -208019519 - AluSq SINE Alu -8 305 20 754 283 8 53 chr3 10017639 10017700 -208019458 + MIR SINE MIR 178 240 -22 225 0 0 0 chr3 10017953 10017978 -208019180 + (T)n Simple_repeat Simple_repeat 1 25 0 2067 127 0 22 chr3 10018001 10018317 -208018841 + AluSc SINE Alu 1 309 0 192 77 0 0 chr3 10018339 10018365 -208018793 + (CAAGC)n Simple_repeat Simple_repeat 2 27 0 346 214 11 11 chr3 10018365 10018454 -208018704 - Charlie8 DNA MER1_type -2276 141 53 22 0 0 0 chr3 10020145 10020167 -208016991 + AT_rich Low_complexity Low_complexity 1 22 0 1873 131 0 0 chr3 10020167 10020426 -208016732 + AluSq SINE Alu 1 259 -54 212 31 62 0 chr3 10020462 10020494 -208016664 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 207 219 0 0 chr3 10020495 10020536 -208016622 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 54 0 0 chr3 10020584 10020621 -208016537 + AT_rich Low_complexity Low_complexity 1 37 0 611 252 103 13 chr3 10020841 10021075 -208016083 + MLT1J LTR MaLR 18 272 -239 2318 254 78 40 chr3 10022372 10023355 -208013803 - L1ME2 LINE L1 0 6098 5037 1470 158 18 108 chr3 10023355 10023696 -208013462 - AluJo SINE Alu -2 310 1 2318 254 78 40 chr3 10023696 10024270 -208012888 - L1ME2 LINE L1 -1061 5037 4486 459 285 6 0 chr3 10024923 10025095 -208012063 - L1ME2 LINE L1 -1596 4484 4312 586 297 66 34 chr3 10025128 10025448 -208011710 - L1ME2 LINE L1 -4491 1770 1441 314 268 78 39 chr3 10025621 10025826 -208011332 - L1ME2 LINE L1 -4840 1138 926 415 267 64 56 chr3 10025909 10026302 -208010856 - L1ME2 LINE L1 -5138 932 537 3575 137 20 18 chr3 10026716 10027313 -208009845 + Tigger3(Golem) DNA MER2_type 2431 3028 -1 592 287 32 57 chr3 10027333 10027612 -208009546 + MLT1K LTR MaLR 141 412 -176 211 286 0 0 chr3 10028558 10028614 -208008544 - MIR3 SINE MIR -27 181 126 25 0 0 0 chr3 10029501 10029526 -208007632 + AT_rich Low_complexity Low_complexity 1 25 0 1807 179 52 0 chr3 10029891 10030216 -208006942 - MER7A DNA MER2_type -5 341 2 187 81 135 27 chr3 10030216 10030253 -208006905 - MIR SINE MIR -11 251 211 321 215 103 28 chr3 10030670 10030777 -208006381 + MER69A DNA AcHobo 44 158 -19 216 0 0 0 chr3 10030841 10030865 -208006293 + (A)n Simple_repeat Simple_repeat 1 24 0 724 189 101 0 chr3 10031314 10031483 -208005675 - MLT2B1 LTR ERVL -334 186 1 211 321 37 12 chr3 10031502 10031583 -208005575 - MIR SINE MIR -69 193 111 1569 199 6 28 chr3 10031687 10032004 -208005154 + AluJb SINE Alu 3 312 0 212 123 0 68 chr3 10032007 10032080 -208005078 + (GAAAA)n Simple_repeat Simple_repeat 1 68 0 621 204 23 11 chr3 10032080 10032256 -208004902 + GA-rich Low_complexity Low_complexity 3 180 0 582 333 155 16 chr3 10032364 10032797 -208004361 - L2 LINE L2 -4 3309 2817 3991 62 318 0 chr3 10032933 10033559 -208003599 + LTR12 LTR ERV1 1 825 -1 341 308 139 29 chr3 10033774 10033982 -208003176 + MIR SINE MIR 16 246 -16 1102 251 111 60 chr3 10034069 10034590 -208002568 - MLT1H LTR MaLR 0 549 2 270 344 23 16 chr3 10034590 10034718 -208002440 + MIR SINE MIR 124 252 -10 1630 205 19 35 chr3 10034724 10035095 -208002063 + MLT1A1 LTR MaLR 1 365 0 414 302 86 14 chr3 10036450 10036672 -208000486 - MIR SINE MIR -14 248 11 376 315 171 20 chr3 10036949 10037095 -208000063 + L3 LINE CR1 1312 1479 -98 358 230 251 40 chr3 10038165 10038344 -207998814 + MIR SINE MIR 37 251 -11 354 291 129 89 chr3 10038823 10039125 -207998033 + L2 LINE L2 2943 3256 -16 745 280 52 13 chr3 10039155 10039387 -207997771 + MIR SINE MIR 19 259 -3 2494 63 0 0 chr3 10040847 10041149 -207996009 + AluY SINE Alu 1 302 -9 306 0 0 0 chr3 10041225 10041259 -207995899 + (TA)n Simple_repeat Simple_repeat 2 35 0 631 274 68 0 chr3 10041517 10041707 -207995451 + MIR SINE MIR 47 249 -13 233 325 103 8 chr3 10042151 10042277 -207994881 - MIR SINE MIR -93 169 32 272 331 49 22 chr3 10043019 10043203 -207993955 + MLT1K LTR MaLR 400 588 0 371 327 45 6 chr3 10043319 10043475 -207993683 - MIR SINE MIR -12 250 89 34 0 0 0 chr3 10043880 10043914 -207993244 + AT_rich Low_complexity Low_complexity 1 34 0 1684 257 138 4 chr3 10044319 10044840 -207992318 + MLT1E LTR MaLR 1 591 -2 23 68 0 0 chr3 10044912 10044956 -207992202 + AT_rich Low_complexity Low_complexity 1 44 0 58 74 0 0 chr3 10045342 10045463 -207991695 + AT_rich Low_complexity Low_complexity 1 121 0 216 216 45 9 chr3 10045494 10045605 -207991553 + (TA)n Simple_repeat Simple_repeat 2 116 0 338 333 82 41 chr3 10045661 10045976 -207991182 + L1MC/D LINE L1 5488 5815 -1993 2439 148 26 7 chr3 10046497 10046916 -207990242 + MSTA LTR MaLR 1 427 -1 1663 230 10 38 chr3 10048278 10048669 -207988489 - MLT1E2 LTR MaLR -19 607 228 310 155 214 68 chr3 10048669 10048772 -207988386 - MLT1E2 LTR MaLR -506 118 1 2244 112 0 7 chr3 10048879 10049183 -207987975 + AluSx SINE Alu 1 302 -10 204 305 7 28 chr3 10049261 10049402 -207987756 + A-rich Low_complexity Low_complexity 2 139 0 407 306 100 11 chr3 10049546 10049817 -207987341 + L1MC4a LINE L1 5278 5572 -2236 1485 192 26 13 chr3 10049863 10050171 -207986987 - AluSx SINE Alu 0 312 1 6010 192 35 16 chr3 10050182 10051481 -207985677 - L1MC3 LINE L1 0 7785 6463 303 271 188 12 chr3 10051538 10051708 -207985450 + L1MC4a LINE L1 5679 5878 -1930 321 127 0 0 chr3 10052071 10052126 -207985032 + L1PB3 LINE L1 6098 6152 -2 29 28 0 0 chr3 10052524 10052560 -207984598 + AT_rich Low_complexity Low_complexity 1 36 0 225 185 31 0 chr3 10053138 10053203 -207983955 - L1MC4 LINE L1 -1350 6692 6626 62 26 0 0 chr3 10053229 10053305 -207983853 + AT_rich Low_complexity Low_complexity 1 76 0 21 57 0 0 chr3 10053435 10053470 -207983688 + AT_rich Low_complexity Low_complexity 1 35 0 2280 64 0 3 chr3 10055291 10055605 -207981553 - AluY SINE Alu 0 313 1 203 375 83 0 chr3 10055636 10055732 -207981426 - MIR SINE MIR -71 137 34 303 350 0 34 chr3 10055775 10055892 -207981266 + MER5A DNA MER1_type 62 174 -15 186 326 211 11 chr3 10056424 10056519 -207980639 - L2 LINE L2 -5 3267 3154 390 230 56 56 chr3 10056543 10056669 -207980489 + L2 LINE L2 3188 3313 0 653 288 214 16 chr3 10057089 10057467 -207979691 + LTR16A LTR ERVL 5 457 0 418 286 0 17 chr3 10057493 10057612 -207979546 + MIR3 SINE MIR 83 199 -9 194 213 64 0 chr3 10058206 10058253 -207978905 + L2 LINE L2 3257 3306 -7 317 93 19 0 chr3 10058598 10058652 -207978506 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 218 354 80 34 chr3 10059559 10059734 -207977424 + MER5A DNA MER1_type 1 183 -6 263 317 16 41 chr3 10061601 10061686 -207975472 - L2 LINE L2 0 3313 3230 1768 187 22 14 chr3 10061686 10062049 -207975109 + MER47A DNA MER2_type 1 366 0 263 317 16 41 chr3 10062049 10062086 -207975072 - L2 LINE L2 -83 3230 3194 306 302 0 12 chr3 10062426 10062512 -207974646 + L2 LINE L2 3225 3309 -4 301 308 23 18 chr3 10062479 10062625 -207974533 - MIR3 SINE MIR -30 178 32 * 249 108 0 0 chr3 10062779 10062816 -207974342 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 411 353 0 0 chr3 10063632 10063782 -207973376 + MER5B DNA MER1_type 29 178 0 293 253 94 79 chr3 10065185 10065387 -207971771 + MARNA DNA Mariner 162 366 -220 3971 147 15 48 chr3 10067266 10068063 -207969095 + L1MA4A LINE L1 5529 6299 -4 190 333 0 0 chr3 10068192 10068246 -207968912 - MER5A DNA MER1_type -50 139 86 2106 127 0 0 chr3 10068357 10068674 -207968484 + AluSx SINE Alu 1 317 0 507 321 26 16 chr3 10069216 10069409 -207967749 + MIR SINE MIR 50 244 -18 2242 64 0 0 chr3 10069756 10070023 -207967135 + AluY SINE Alu 38 304 -7 753 239 74 0 chr3 10070245 10070421 -207966737 + MER5A DNA MER1_type 1 189 0 366 322 164 0 chr3 10070431 10070583 -207966575 + MER5A DNA MER1_type 13 189 0 1532 198 87 37 chr3 10070669 10071104 -207966054 + MSTB2 LTR MaLR 1 457 0 791 184 119 0 chr3 10071242 10071410 -207965748 - MER20 DNA MER1_type 0 219 32 698 290 83 39 chr3 10071471 10071921 -207965237 - MLT1H1 LTR MaLR 0 555 80 2150 144 14 3 chr3 10072153 10072515 -207964643 + MER47A DNA MER2_type 1 366 0 871 230 171 12 chr3 10072515 10072764 -207964394 - L1ME3 LINE L1 -37 6125 5833 199 268 0 85 chr3 10073816 10073898 -207963260 + MER5A DNA MER1_type 28 102 -87 543 304 75 20 chr3 10074294 10074547 -207962611 - L2 LINE L2 -194 3078 2812 1511 248 17 8 chr3 10074571 10074930 -207962228 + MLT2D LTR ERVL 5 366 -48 210 150 0 0 chr3 10074934 10074974 -207962184 + (TAGG)n Simple_repeat Simple_repeat 4 43 0 348 123 18 0 chr3 10075031 10075088 -207962070 + MLT2D LTR ERVL 357 414 0 185 329 13 51 chr3 10075925 10076004 -207961154 - L2 LINE L2 -7 3306 3231 738 270 73 43 chr3 10076147 10076380 -207960778 - MIR SINE MIR -21 241 2 249 354 49 21 chr3 10076597 10076741 -207960417 - MIR SINE MIR -29 233 86 206 176 20 0 chr3 10077279 10077330 -207959828 + GA-rich Low_complexity Low_complexity 1 52 0 278 383 55 22 chr3 10078068 10078379 -207958779 - L2 LINE L2 -1387 1927 1607 227 350 0 41 chr3 10078691 10078788 -207958370 + MER5A DNA MER1_type 2 94 -95 28 0 0 0 chr3 10079090 10079118 -207958040 + AT_rich Low_complexity Low_complexity 1 28 0 1349 246 79 4 chr3 10079136 10079623 -207957535 - L1MD2 LINE L1 -51 6115 5586 183 250 0 0 chr3 10079962 10080006 -207957152 + L2 LINE L2 3269 3312 -1 22 35 0 0 chr3 10080264 10080293 -207956865 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 10080975 10080995 -207956163 + (TATG)n Simple_repeat Simple_repeat 1 20 0 247 250 15 0 chr3 10081001 10081069 -207956089 + (TG)n Simple_repeat Simple_repeat 2 70 0 444 276 121 40 chr3 10081488 10081687 -207955471 - MIR SINE MIR -14 248 34 248 264 0 8 chr3 10081735 10081856 -207955302 + (TA)n Simple_repeat Simple_repeat 2 121 0 280 317 122 18 chr3 10082134 10082298 -207954860 + MLT1J2 LTR MaLR 200 380 -70 389 281 130 16 chr3 10082420 10082612 -207954546 - MER58C DNA MER1_type 0 215 2 2505 150 26 42 chr3 10083064 10083558 -207953600 + MER66B LTR ERV1 1 486 0 225 0 0 0 chr3 10083762 10083787 -207953371 + (TG)n Simple_repeat Simple_repeat 2 26 0 883 158 0 62 chr3 10083873 10084050 -207953108 - FAM SINE Alu -9 166 1 206 118 0 29 chr3 10084338 10084372 -207952786 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 574 266 57 11 chr3 10085185 10085362 -207951796 - MER5A DNA MER1_type -3 186 2 441 314 93 42 chr3 10085807 10086043 -207951115 + MIR SINE MIR 1 248 -14 377 291 90 45 chr3 10086187 10086410 -207950748 + L1ME4a LINE L1 5665 5897 -224 24 53 0 0 chr3 10086514 10086552 -207950606 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr3 10086570 10086607 -207950551 + AT_rich Low_complexity Low_complexity 1 37 0 229 306 0 0 chr3 10086845 10086917 -207950241 + CT-rich Low_complexity Low_complexity 2 73 0 2168 102 7 0 chr3 10087317 10087643 -207949515 - AluSx SINE Alu 0 328 1 1723 157 11 18 chr3 10089077 10089384 -207947774 + AluJb SINE Alu 1 305 0 262 361 54 23 chr3 10090699 10090829 -207946329 + L3 LINE CR1 234 367 -1210 292 273 65 0 chr3 10090957 10091096 -207946062 + MER103 DNA DNA 3 150 -16 2001 118 0 78 chr3 10091868 10092189 -207944969 - AluSx SINE Alu -16 296 1 24 0 0 0 chr3 10093092 10093116 -207944042 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 10093412 10093434 -207943724 + AT_rich Low_complexity Low_complexity 1 22 0 185 358 76 52 chr3 10094023 10094353 -207942805 - L2 LINE L2 -571 2743 2406 335 172 0 31 chr3 10094634 10094698 -207942460 - L1ME3A LINE L1 -78 6092 6031 2229 105 0 7 chr3 10095023 10095317 -207941841 - AluSc SINE Alu -17 292 1 404 251 52 76 chr3 10095321 10095532 -207941626 + HsTC2 DNA Tc2 13 218 -1680 759 257 60 0 chr3 10095535 10095753 -207941405 + HsTC2 DNA Tc2 500 730 -1168 707 179 26 13 chr3 10096061 10096212 -207940946 - L1MC1 LINE L1 0 6333 6181 629 198 0 0 chr3 10096216 10096327 -207940831 - AluJb SINE Alu -185 127 17 647 126 0 10 chr3 10096330 10096433 -207940725 - L1MC1 LINE L1 -152 6181 6080 279 179 30 15 chr3 10096471 10096538 -207940620 + HsTC2 DNA Tc2 1831 1898 0 196 266 92 92 chr3 10096729 10096838 -207940320 - MIR SINE MIR -152 110 2 330 355 82 14 chr3 10097800 10098020 -207939138 - MIR SINE MIR -25 237 3 233 136 114 0 chr3 10099179 10099223 -207937935 - MIR SINE MIR -107 155 107 308 335 55 6 chr3 10100451 10100615 -207936543 + MIR SINE MIR 20 191 -71 1667 183 3 17 chr3 10100897 10101187 -207935971 + AluJb SINE Alu 1 286 -26 240 301 36 36 chr3 10103827 10103910 -207933248 + L2 LINE L2 3189 3271 -1 498 61 0 0 chr3 10104106 10104172 -207932986 + (TCCA)n Simple_repeat Simple_repeat 2 67 0 1759 184 58 18 chr3 10104562 10104943 -207932215 + MSTD LTR MaLR 1 396 0 31 0 0 0 chr3 10105262 10105293 -207931865 + AT_rich Low_complexity Low_complexity 1 31 0 2282 110 7 0 chr3 10106126 10106426 -207930732 + AluSx SINE Alu 1 302 -10 1056 125 0 0 chr3 10107128 10107272 -207929886 + AluSp SINE Alu 116 259 -54 2072 115 3 3 chr3 10107732 10108028 -207929130 - AluSx SINE Alu -16 296 1 405 250 10 0 chr3 10108059 10108159 -207928999 + FLAM_A SINE Alu 25 125 -17 29 78 0 0 chr3 10110848 10110912 -207926246 + AT_rich Low_complexity Low_complexity 1 64 0 2060 134 3 3 chr3 10111298 10111597 -207925561 - AluSx SINE Alu -13 299 1 687 244 68 94 chr3 10112277 10112659 -207924499 + MLT1J LTR MaLR 123 494 -17 310 293 107 27 chr3 10112774 10112924 -207924234 + MIR3 SINE MIR 27 188 -20 2063 134 0 7 chr3 10113055 10113361 -207923797 + AluSg SINE Alu 5 308 -2 246 81 0 0 chr3 10113721 10113758 -207923400 + (CA)n Simple_repeat Simple_repeat 1 37 0 2141 111 0 26 chr3 10114265 10114572 -207922586 - AluSc SINE Alu -8 301 3 596 208 84 45 chr3 10116161 10116339 -207920819 + MER20 DNA MER1_type 35 219 0 366 23 0 0 chr3 10117207 10117250 -207919908 + (CAT)n Simple_repeat Simple_repeat 2 44 0 284 373 63 6 chr3 10117405 10117563 -207919595 - MLT1K LTR MaLR -408 180 14 24 0 0 0 chr3 10117943 10117967 -207919191 + AT_rich Low_complexity Low_complexity 1 24 0 226 321 0 9 chr3 10118435 10118547 -207918611 + A-rich Low_complexity Low_complexity 5 115 0 22 80 0 0 chr3 10118600 10118650 -207918508 + AT_rich Low_complexity Low_complexity 1 50 0 28 48 0 0 chr3 10118952 10118994 -207918164 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 10121475 10121496 -207915662 + AT_rich Low_complexity Low_complexity 1 21 0 235 158 13 26 chr3 10121993 10122069 -207915089 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 1519 185 42 1 chr3 10122672 10123128 -207914030 + L1M2 LINE L1 5057 5530 -743 505 305 84 18 chr3 10123366 10123592 -207913566 + MIR SINE MIR 5 245 -17 180 271 0 42 chr3 10123817 10123865 -207913293 + L3 LINE CR1 1517 1562 -15 271 309 75 23 chr3 10124153 10124502 -207912656 + L1ME LINE L1 4256 4622 -1524 303 271 78 78 chr3 10124938 10125104 -207912054 + L1ME LINE L1 5647 5812 -309 221 238 0 0 chr3 10125104 10125146 -207912012 + polypurine Low_complexity Low_complexity 1 42 0 28 0 0 0 chr3 10125161 10125189 -207911969 + AT_rich Low_complexity Low_complexity 1 28 0 1893 155 24 39 chr3 10125219 10125600 -207911558 - THE1C LTR MaLR 0 375 1 211 217 22 0 chr3 10126816 10126862 -207910296 + CT-rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr3 10127104 10127132 -207910026 + AT_rich Low_complexity Low_complexity 1 28 0 340 241 15 138 chr3 10127161 10127356 -207909802 + MIR SINE MIR 78 248 -14 234 369 37 42 chr3 10132561 10132775 -207904383 + MIR SINE MIR 19 231 -31 195 184 0 0 chr3 10132988 10133026 -207904132 + (TG)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 10133025 10133054 -207904104 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 1296 112 0 0 chr3 10134176 10134384 -207902774 + AluSg/x SINE Alu 114 321 0 317 322 119 0 chr3 10134490 10134608 -207902550 + L2 LINE L2 3181 3312 -1 183 324 103 15 chr3 10135048 10135116 -207902042 + L2 LINE L2 3149 3222 -50 252 347 85 17 chr3 10135254 10135430 -207901728 + L2 LINE L2 2659 2846 -468 414 320 42 82 chr3 10135788 10136241 -207900917 + LTR67 LTR ERVL 100 534 -23 271 291 94 43 chr3 10136354 10136471 -207900687 + L2 LINE L2 3142 3264 -8 215 288 38 83 chr3 10136835 10136967 -207900191 - L2 LINE L2 -220 3052 2927 26 0 0 0 chr3 10141705 10141731 -207895427 + AT_rich Low_complexity Low_complexity 1 26 0 193 260 52 65 chr3 10142564 10142641 -207894517 + MIR SINE MIR 12 87 -175 355 246 88 35 chr3 10143803 10143917 -207893241 + L2 LINE L2 3194 3313 0 273 376 29 29 chr3 10144383 10144553 -207892605 + MIR SINE MIR 92 261 -1 403 223 177 15 chr3 10144640 10144770 -207892388 - L2 LINE L2 -2 3311 3161 1235 299 164 22 chr3 10144846 10145631 -207891527 - L2 LINE L2 -720 2594 1698 2256 125 0 0 chr3 10145686 10145998 -207891160 - AluSx SINE Alu 0 312 1 741 300 182 17 chr3 10146385 10146742 -207890416 - L2 LINE L2 0 3313 2898 2246 108 0 7 chr3 10147015 10147320 -207889838 + AluSx SINE Alu 1 303 -9 211 286 29 0 chr3 10149521 10149591 -207887567 - MIR SINE MIR -185 77 6 2500 63 0 16 chr3 10150626 10150942 -207886216 + AluY SINE Alu 1 311 0 202 277 21 0 chr3 10151128 10151175 -207885983 + L2 LINE L2 3210 3257 -15 1444 226 46 6 chr3 10151233 10151583 -207885575 + MLT1A2 LTR MaLR 3 366 -8 919 243 0 0 chr3 10152868 10153057 -207884101 - MER5A DNA MER1_type 0 189 1 198 318 158 48 chr3 10153756 10153997 -207883161 + L2 LINE L2 2794 3059 -213 1402 175 5 126 chr3 10154000 10154422 -207882736 - MLT1B LTR MaLR -18 372 2 262 190 70 10 chr3 10155839 10155939 -207881219 + (TA)n Simple_repeat Simple_repeat 2 107 0 596 265 97 22 chr3 10155941 10156126 -207881032 - MIR SINE MIR -55 207 9 616 334 64 53 chr3 10156166 10156903 -207880255 + L2 LINE L2 2489 3235 -78 272 241 38 13 chr3 10157431 10157510 -207879648 - MLT1J2 LTR MaLR 0 450 370 251 350 17 0 chr3 10157825 10157945 -207879213 + MIR SINE MIR 111 232 -30 24 0 0 0 chr3 10158259 10158283 -207878875 + AT_rich Low_complexity Low_complexity 1 24 0 2202 125 0 0 chr3 10158475 10158772 -207878386 - AluSx SINE Alu -11 301 5 1221 168 3 106 chr3 10159085 10159377 -207877781 + AluJo SINE Alu 44 305 -7 198 67 0 0 chr3 10212561 10212572 -207824586 + (TAAAAA)n Simple_repeat Simple_repeat 1 11 -19 5011 45 0 0 chr3 10212572 10213176 -207823982 + L1PA5 LINE L1 5549 6152 -2 198 67 0 0 chr3 10213176 10213194 -207823964 + (TAAAAA)n Simple_repeat Simple_repeat 10 30 0 278 276 0 51 chr3 10213210 10213308 -207823850 + L2 LINE L2 3221 3313 0 256 364 119 7 chr3 10213354 10213497 -207823661 + MIR3 SINE MIR 16 174 -34 233 330 43 0 chr3 10214000 10214094 -207823064 - MIR SINE MIR -91 117 20 585 0 0 0 chr3 10214647 10214712 -207822446 + (TC)n Simple_repeat Simple_repeat 1 65 0 2102 124 36 30 chr3 10214951 10215313 -207821845 + THE1B LTR MaLR 1 364 0 289 308 226 0 chr3 10215597 10215743 -207821415 + MIR SINE MIR 65 243 -19 235 286 65 13 chr3 10215787 10215864 -207821294 + MIR3 SINE MIR 110 190 -18 24 32 0 0 chr3 10215864 10215895 -207821263 + AT_rich Low_complexity Low_complexity 1 31 0 2236 92 0 13 chr3 10215906 10216209 -207820949 + AluSx SINE Alu 1 299 -13 520 252 58 22 chr3 10217861 10218000 -207819158 + MER5A DNA MER1_type 14 157 -32 3702 261 96 38 chr3 10218000 10218671 -207818487 - L1M LINE L1 -840 5306 4675 180 0 0 0 chr3 10218671 10218691 -207818467 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3702 261 96 38 chr3 10218691 10219989 -207817169 - L1M LINE L1 -1471 4675 3137 457 287 9 0 chr3 10219989 10220104 -207817054 - FLAM_A SINE Alu -17 116 1 3702 261 96 38 chr3 10220104 10220661 -207816497 - L1M LINE L1 -3009 3137 2614 229 237 17 17 chr3 10220666 10220725 -207816433 + MER5A DNA MER1_type 130 188 -1 465 271 52 42 chr3 10221118 10221310 -207815848 + MIR SINE MIR 68 261 -1 481 292 55 24 chr3 10222804 10223058 -207814100 - L1MC4a LINE L1 -321 5800 5670 332 301 134 29 chr3 10223091 10223382 -207813776 - L1ME LINE L1 -394 5727 5391 302 325 53 33 chr3 10223968 10224119 -207813039 + L2 LINE L2 3160 3313 0 237 94 57 57 chr3 10225184 10225237 -207811921 - L1ME4a LINE L1 -2 6119 6067 23 78 0 0 chr3 10225808 10225859 -207811299 + AT_rich Low_complexity Low_complexity 1 51 0 2511 75 0 0 chr3 10226089 10226397 -207810761 - AluY SINE Alu -3 308 1 290 274 102 47 chr3 10226402 10226617 -207810541 - HAL1 LINE L1 0 2507 2281 269 256 26 17 chr3 10226682 10226799 -207810359 - HAL1 LINE L1 -347 2160 2043 345 285 34 53 chr3 10226985 10227192 -207809966 - HAL1 LINE L1 -710 1797 1595 697 257 171 71 chr3 10227403 10227951 -207809207 - HAL1 LINE L1 -916 1591 989 274 309 141 28 chr3 10228042 10228291 -207808867 - HAL1 LINE L1 -1632 875 599 2532 27 0 0 chr3 10228504 10228801 -207808357 - L1HS LINE L1 0 6155 5859 250 256 158 0 chr3 10229199 10229281 -207807877 - L1ME LINE L1 -519 5602 5508 335 219 126 60 chr3 10229401 10229552 -207807606 - L1ME LINE L1 -767 5379 5219 2188 121 0 3 chr3 10234755 10235052 -207802106 - AluSx SINE Alu -16 296 1 253 241 0 17 chr3 10235816 10235874 -207801284 + MLT1J LTR MaLR 113 169 -342 2229 108 23 0 chr3 10236081 10236386 -207800772 - AluSx SINE Alu 0 312 1 585 288 100 39 chr3 10236386 10236656 -207800502 + MLT1L LTR MaLR 316 605 -10 287 298 12 0 chr3 10236667 10236751 -207800407 + L2 LINE L2 3185 3269 -3 198 0 0 0 chr3 10237073 10237095 -207800063 + (GA)n Simple_repeat Simple_repeat 1 22 0 248 251 96 107 chr3 10237579 10237766 -207799392 - L2 LINE L2 0 3313 3129 2858 268 66 40 chr3 10237766 10238249 -207798909 - L1M4 LINE L1 -5245 1297 828 229 25 0 50 chr3 10238249 10238289 -207798869 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2858 268 66 40 chr3 10238289 10239068 -207798090 - L1M4 LINE L1 -5714 828 2 2174 298 80 58 chr3 10239071 10240372 -207796786 - L2 LINE L2 -175 3138 1824 242 340 35 42 chr3 10242409 10242553 -207794605 - L2 LINE L2 -237 3035 2893 632 245 57 38 chr3 10242997 10243287 -207793871 - L1ME3 LINE L1 -5 6165 5861 203 147 0 0 chr3 10243306 10243340 -207793818 + (TG)n Simple_repeat Simple_repeat 1 34 0 1477 212 36 34 chr3 10243344 10243730 -207793428 - MER39 LTR ERV1 -1 706 320 296 222 46 65 chr3 10243720 10243828 -207793330 - LTR48B LTR ERV1 -538 106 1 * 351 0 0 0 chr3 10243839 10243878 -207793280 + (TG)n Simple_repeat Simple_repeat 1 39 0 564 207 42 0 chr3 10243881 10244019 -207793139 - L1ME2 LINE L1 -279 5885 5739 200 308 64 0 chr3 10245394 10245472 -207791686 - MIR SINE MIR -98 164 82 2185 112 37 31 chr3 10245565 10245948 -207791210 - L1PB1 LINE L1 -5 6146 5762 564 284 73 32 chr3 10246082 10246411 -207790747 - LTR16A1 LTR ERVL 0 457 80 307 344 23 0 chr3 10246564 10246692 -207790466 - MERVL LTR ERVL -2634 2851 2721 287 256 49 77 chr3 10246735 10246905 -207790253 - MERVL LTR ERVL -2372 2624 2461 316 289 22 0 chr3 10247115 10247205 -207789953 - MERVL LTR ERVL -2639 2357 2266 844 283 129 37 chr3 10247206 10247609 -207789549 - MERVL LTR ERVL -2865 2131 1692 744 339 55 31 chr3 10247812 10248228 -207788930 - MERVL LTR ERVL -3835 1161 736 821 158 49 54 chr3 10248508 10248692 -207788466 - MER5A DNA MER1_type -6 183 1 419 248 20 10 chr3 10248692 10248793 -207788365 - LTR16A1 LTR ERVL -341 116 15 2047 109 49 0 chr3 10249724 10250008 -207787150 + AluSx SINE Alu 1 298 -14 362 294 112 18 chr3 10250067 10250237 -207786921 + L2 LINE L2 3112 3297 -16 191 170 21 0 chr3 10250520 10250567 -207786591 + GA-rich Low_complexity Low_complexity 4 51 0 230 349 63 32 chr3 10250854 10250980 -207786178 + MER5A DNA MER1_type 51 180 -9 406 353 47 26 chr3 10251002 10251234 -207785924 - MIR SINE MIR -6 256 20 21 36 0 0 chr3 10252771 10252799 -207784359 + AT_rich Low_complexity Low_complexity 1 28 0 200 300 8 42 chr3 10252880 10253000 -207784158 + (TATG)n Simple_repeat Simple_repeat 3 118 0 320 319 7 0 chr3 10253000 10253141 -207784017 - MER113 DNA MER1_type? -378 143 2 738 327 57 71 chr3 10253448 10253610 -207783548 + L2 LINE L2 2729 2892 -421 1984 145 42 31 chr3 10253610 10253969 -207783189 + THE1B LTR MaLR 1 363 -1 738 327 57 71 chr3 10253969 10254381 -207782777 + L2 LINE L2 2892 3313 0 215 376 0 0 chr3 10255120 10255221 -207781937 - L2 LINE L2 -706 2608 2508 1255 128 0 5 chr3 10255757 10255952 -207781206 + L1PB1 LINE L1 1 194 -6669 13014 163 69 6 chr3 10255954 10261217 -207775941 + L1PB1 LINE L1 905 6507 -360 252 0 0 0 chr3 10261283 10261311 -207775847 + (CA)n Simple_repeat Simple_repeat 2 29 0 2366 126 6 0 chr3 10261312 10261668 -207775490 + L1PB1 LINE L1 6508 6865 -2 22 0 0 0 chr3 10261668 10261690 -207775468 + AT_rich Low_complexity Low_complexity 1 22 0 2017 161 41 19 chr3 10263408 10263775 -207773383 - THE1C LTR MaLR 0 375 1 327 268 263 24 chr3 10264871 10265076 -207772082 - MIR SINE MIR -3 259 6 363 298 0 0 chr3 10265557 10265651 -207771507 - MER117 DNA MER1_type -35 162 69 700 273 11 32 chr3 10265752 10265939 -207771219 - MER5A DNA MER1_type -6 183 1 643 290 40 24 chr3 10265951 10266203 -207770955 + MIR SINE MIR 7 262 0 1817 146 69 0 chr3 10266393 10266681 -207770477 - AluJo SINE Alu -4 308 1 2821 112 17 0 chr3 10267258 10267677 -207769481 - L1PA13 LINE L1 0 6163 5738 21 36 0 0 chr3 10267677 10267705 -207769453 + AT_rich Low_complexity Low_complexity 1 28 0 2574 150 31 10 chr3 10267746 10268233 -207768925 + L1MA5 LINE L1 5802 6298 -2 1995 126 0 29 chr3 10268441 10268750 -207768408 - AluSx SINE Alu -12 300 1 311 276 181 29 chr3 10271071 10271281 -207765877 - MIR SINE MIR -5 257 16 303 273 201 19 chr3 10271663 10271817 -207765341 - MLT1J2 LTR MaLR -4 446 265 915 217 0 48 chr3 10271817 10272006 -207765152 + MER5A DNA MER1_type 9 188 -1 2499 111 67 7 chr3 10273402 10273806 -207763352 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr3 10274505 10274529 -207762629 + (A)n Simple_repeat Simple_repeat 1 24 0 1711 179 43 156 chr3 10274625 10275206 -207761952 + MLT2B3 LTR ERVL 1 509 -45 500 0 17 0 chr3 10275206 10275266 -207761892 + (CA)n Simple_repeat Simple_repeat 1 61 0 1711 179 43 156 chr3 10275266 10275306 -207761852 + MLT2B3 LTR ERVL 509 552 -2 2917 247 26 1 chr3 10275306 10275995 -207761163 + HERVL-B3 LTR ERVL 64 769 -4885 1205 248 8 0 chr3 10275995 10276241 -207760917 - ERVL LTR ERVL -5116 648 401 18710 174 20 14 chr3 10276243 10279463 -207757695 + HERVL-B3 LTR ERVL 811 4054 -1710 1993 154 0 3 chr3 10279463 10279768 -207757390 - AluJb SINE Alu -8 304 1 18710 174 20 14 chr3 10279768 10279856 -207757302 + HERVL-B3 LTR ERVL 4054 4140 -1624 695 232 0 96 chr3 10279870 10280080 -207757078 + MLT2B3 LTR ERVL 282 359 -94 396 0 0 0 chr3 10280086 10280130 -207757028 + (CA)n Simple_repeat Simple_repeat 1 44 0 31 58 0 0 chr3 10280158 10280210 -207756948 + AT_rich Low_complexity Low_complexity 1 52 0 259 167 0 0 chr3 10280220 10280268 -207756890 + MLT2B3 LTR ERVL 473 520 0 487 293 94 69 chr3 10280626 10281032 -207756126 + Charlie8 DNA MER1_type 3 418 -1999 262 204 0 0 chr3 10281110 10281164 -207755994 + Charlie8 DNA MER1_type 1360 1413 -1004 450 268 58 0 chr3 10281660 10281798 -207755360 - MER103 DNA DNA -4 162 17 2002 136 23 3 chr3 10282004 10282305 -207754853 + AluSx SINE Alu 4 310 -2 348 43 0 0 chr3 10282375 10282421 -207754737 + (TG)n Simple_repeat Simple_repeat 2 47 0 2141 102 7 16 chr3 10282499 10282802 -207754356 - AluSx SINE Alu -10 302 3 200 292 0 0 chr3 10282908 10282956 -207754202 + L2 LINE L2 3217 3264 -8 324 0 0 0 chr3 10283303 10283339 -207753819 + (TG)n Simple_repeat Simple_repeat 1 36 0 208 171 0 24 chr3 10284004 10284045 -207753113 + CT-rich Low_complexity Low_complexity 3 42 0 302 191 75 21 chr3 10284795 10284889 -207752269 - LTR67 LTR ERVL 0 557 459 180 0 0 0 chr3 10285507 10285527 -207751631 + (CA)n Simple_repeat Simple_repeat 2 21 0 1535 175 45 31 chr3 10286011 10286303 -207750855 + AluJo SINE Alu 1 296 -16 40 49 0 0 chr3 10286303 10286364 -207750794 + AT_rich Low_complexity Low_complexity 1 61 0 255 289 164 38 chr3 10286765 10287028 -207750130 - L1ME LINE L1 -451 5696 5401 337 316 78 54 chr3 10287133 10287506 -207749652 - L1ME LINE L1 -3451 2678 2297 23 68 0 0 chr3 10287662 10287706 -207749452 + AT_rich Low_complexity Low_complexity 1 44 0 317 330 117 61 chr3 10288021 10288411 -207748747 - L1ME LINE L1 -745 1745 1326 286 276 109 38 chr3 10288466 10288676 -207748482 - L1ME LINE L1 -4930 1189 965 261 243 0 0 chr3 10288813 10288883 -207748275 + (TA)n Simple_repeat Simple_repeat 1 70 0 306 389 25 33 chr3 10288947 10289191 -207747967 - L1ME LINE L1 -5389 730 489 344 307 62 64 chr3 10289253 10289611 -207747547 - L1ME LINE L1 -5758 361 5 220 264 0 0 chr3 10291103 10291175 -207745983 + A-rich Low_complexity Low_complexity 1 72 0 277 366 0 11 chr3 10291958 10292051 -207745107 + L2 LINE L2 3173 3264 -8 1172 209 21 8 chr3 10292224 10292463 -207744695 - AluJo SINE Alu -14 298 57 587 303 34 0 chr3 10292609 10292784 -207744374 - MLT1J LTR MaLR -330 181 1 354 378 31 0 chr3 10292851 10292978 -207744180 + L2 LINE L2 3141 3271 -1 549 157 0 0 chr3 10293524 10293607 -207743551 + THE1B LTR MaLR 2 84 -291 994 141 59 29 chr3 10293611 10293781 -207743377 + THE1B LTR MaLR 190 364 0 285 241 157 19 chr3 10294386 10294494 -207742664 - MER5C DNA MER1_type -200 124 2 240 303 9 28 chr3 10294693 10294802 -207742356 - MIR SINE MIR -4 258 152 206 313 16 16 chr3 10294881 10294945 -207742213 - MIR SINE MIR -186 76 13 250 329 36 21 chr3 10295301 10295441 -207741717 - L2 LINE L2 -871 2443 2302 21 0 0 0 chr3 10296521 10296542 -207740616 + AT_rich Low_complexity Low_complexity 1 21 0 806 222 45 15 chr3 10296945 10297143 -207740015 + MER3 DNA MER1_type 6 209 0 194 349 85 21 chr3 10297203 10297392 -207739766 + MIR SINE MIR 57 257 -5 22 0 0 0 chr3 10297409 10297431 -207739727 + AT_rich Low_complexity Low_complexity 1 22 0 815 241 11 0 chr3 10297441 10297632 -207739526 - AluJo SINE Alu -107 205 13 2203 84 0 40 chr3 10297633 10297956 -207739202 - AluSq SINE Alu 0 311 1 198 304 29 0 chr3 10298017 10298086 -207739072 + MIR SINE MIR 83 153 -109 209 293 17 0 chr3 10298185 10298243 -207738915 + L2 LINE L2 2596 2654 -660 2258 102 0 7 chr3 10298380 10298683 -207738475 - AluSg SINE Alu -9 301 1 675 229 102 54 chr3 10299747 10299952 -207737206 + MER58A DNA MER1_type 10 224 0 902 189 14 78 chr3 10299960 10300177 -207736981 - MER20 DNA MER1_type -16 203 1 26 50 0 0 chr3 10301852 10301892 -207735266 + AT_rich Low_complexity Low_complexity 1 40 0 358 309 58 29 chr3 10301908 10302151 -207735007 - L1MC5 LINE L1 -83 7878 7629 1696 149 3 68 chr3 10302235 10302556 -207734602 - AluSx SINE Alu -10 302 3 23 33 0 0 chr3 10304351 10304381 -207732777 + AT_rich Low_complexity Low_complexity 1 30 0 260 329 21 35 chr3 10304514 10304657 -207732501 - L2 LINE L2 0 3313 3173 607 250 0 0 chr3 10304781 10304929 -207732229 + MIR SINE MIR 100 247 -15 241 366 46 15 chr3 10305668 10305799 -207731359 + L2 LINE L2 3133 3267 -5 1925 164 0 0 chr3 10307195 10307494 -207729664 - AluSx SINE Alu -13 299 1 1420 190 29 3 chr3 10307600 10307916 -207729242 - MER33 DNA MER1_type 0 324 1 25 0 0 0 chr3 10308369 10308394 -207728764 + AT_rich Low_complexity Low_complexity 1 25 0 2432 90 0 0 chr3 10308455 10308765 -207728393 - AluY SINE Alu -1 310 1 503 330 22 22 chr3 10308900 10309173 -207727985 + L1ME3A LINE L1 5659 5931 -239 189 0 0 0 chr3 10309230 10309251 -207727907 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9008 232 93 21 chr3 10309450 10314418 -207722740 - L1PA16 LINE L1 -20 6849 1438 3708 53 0 0 chr3 10314428 10314884 -207722274 + L1PA5 LINE L1 5696 6151 -3 1325 216 49 54 chr3 10315290 10315660 -207721498 - L1PA16 LINE L1 -6038 811 444 393 341 71 66 chr3 10315682 10315893 -207721265 - L1M2 LINE L1 -6064 785 574 1245 311 35 14 chr3 10316403 10316834 -207720324 - L1M2 LINE L1 -6399 450 11 221 327 120 33 chr3 10316919 10317069 -207720089 - L3 LINE CR1 -834 743 581 407 280 38 71 chr3 10317134 10317345 -207719813 - MIR SINE MIR -38 224 21 2283 114 0 0 chr3 10317923 10318221 -207718937 + AluSq SINE Alu 4 301 -12 1263 148 8 25 chr3 10318614 10318648 -207718510 + L1MA5A LINE L1 6049 6082 -215 2350 135 25 0 chr3 10318648 10319003 -207718155 + THE1B LTR MaLR 1 364 0 1263 148 8 25 chr3 10319003 10319211 -207717947 + L1MA5A LINE L1 6082 6287 -10 1419 188 35 22 chr3 10320553 10320872 -207716286 + L1MA3 LINE L1 5983 6305 0 847 190 66 28 chr3 10320888 10321099 -207716059 + MER20 DNA MER1_type 1 219 0 188 234 125 31 chr3 10321386 10321450 -207715708 - L2 LINE L2 -12 3301 3232 414 296 63 25 chr3 10321523 10321682 -207715476 + L3 LINE CR1 1286 1450 -127 189 107 0 0 chr3 10321790 10321818 -207715340 + (TA)n Simple_repeat Simple_repeat 1 28 0 567 222 31 43 chr3 10321844 10322006 -207715152 - MER45A DNA AcHobo -18 160 1 327 85 0 0 chr3 10322332 10322379 -207714779 + (TAA)n Simple_repeat Simple_repeat 2 48 0 515 254 122 24 chr3 10322578 10322697 -207714461 + MIR SINE MIR 22 128 -134 1984 160 41 55 chr3 10322697 10323135 -207714023 + MSTB1 LTR MaLR 1 432 0 515 254 122 24 chr3 10323135 10323220 -207713938 + MIR SINE MIR 128 246 -16 263 379 49 10 chr3 10323258 10323461 -207713697 + MIR SINE MIR 13 223 -39 457 312 83 0 chr3 10323942 10324099 -207713059 + MIR SINE MIR 32 201 -61 24 32 0 0 chr3 10326492 10326523 -207710635 + AT_rich Low_complexity Low_complexity 1 31 0 528 241 0 0 chr3 10326787 10326961 -207710197 + (TA)n Simple_repeat Simple_repeat 2 175 0 282 56 0 0 chr3 10326998 10327034 -207710124 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 506 345 24 0 chr3 10327149 10327317 -207709841 - MER5B DNA MER1_type -6 172 1 24 0 0 0 chr3 10327965 10327989 -207709169 + AT_rich Low_complexity Low_complexity 1 24 0 832 112 28 0 chr3 10328523 10328666 -207708492 - L1MA5A LINE L1 -3 6294 6148 24 32 0 0 chr3 10329131 10329162 -207707996 + AT_rich Low_complexity Low_complexity 1 31 0 2384 72 0 0 chr3 10329393 10329683 -207707475 + AluY SINE Alu 1 290 -21 367 264 72 52 chr3 10329687 10329880 -207707278 - L1MC5 LINE L1 -49 7912 7716 248 214 45 45 chr3 10329965 10330054 -207707104 - L1ME LINE L1 -462 5659 5571 258 283 0 16 chr3 10330939 10331020 -207706138 - MIR SINE MIR -121 87 8 791 297 68 0 chr3 10331111 10331347 -207705811 - MIR SINE MIR -5 257 6 309 274 35 138 chr3 10332201 10332519 -207704639 - L1ME LINE L1 -1310 4836 4552 2142 103 0 0 chr3 10332740 10333069 -207704089 - AluY SINE Alu 0 329 1 367 301 133 25 chr3 10333234 10333436 -207703722 - Charlie8 DNA MER1_type -2152 265 93 1871 156 3 7 chr3 10333458 10333753 -207703405 + AluJb SINE Alu 1 294 -18 459 81 35 0 chr3 10333768 10333854 -207703304 + (CA)n Simple_repeat Simple_repeat 2 90 0 1065 236 129 63 chr3 10334006 10334464 -207702694 - MLT1D LTR MaLR 0 505 18 306 231 91 8 chr3 10334733 10334854 -207702304 - L1ME3A LINE L1 -208 5962 5832 608 325 44 0 chr3 10334870 10335119 -207702039 - L1ME3A LINE L1 -415 5755 5496 216 222 32 16 chr3 10335121 10335184 -207701974 + CT-rich Low_complexity Low_complexity 3 66 0 256 48 48 0 chr3 10335189 10335231 -207701927 + (TC)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr3 10336155 10336178 -207700980 + (CA)n Simple_repeat Simple_repeat 2 24 0 194 337 40 0 chr3 10337176 10337277 -207699881 + MIR SINE MIR 108 212 -50 231 340 14 62 chr3 10337472 10337616 -207699542 - MIR SINE MIR -116 146 10 279 240 53 0 chr3 10337911 10337986 -207699172 + MIR SINE MIR 86 164 -98 497 250 15 38 chr3 10338874 10339006 -207698152 - L2 LINE L2 0 3272 3144 232 354 67 45 chr3 10339236 10339459 -207697699 - L2 LINE L2 -373 2941 2714 432 300 42 55 chr3 10341946 10342183 -207694975 + MIR SINE MIR 1 234 -28 1086 137 5 105 chr3 10345048 10345267 -207691891 + AluJo SINE Alu 89 285 -27 448 240 85 0 chr3 10345325 10345454 -207691704 - MER58B DNA MER1_type 0 341 202 318 206 16 0 chr3 10345531 10345594 -207691564 + MER3 DNA MER1_type 83 146 -63 256 218 0 0 chr3 10345584 10345639 -207691519 + MER3 DNA MER1_type 151 205 -4 * 22 35 0 0 chr3 10345900 10345929 -207691229 + AT_rich Low_complexity Low_complexity 1 29 0 530 272 23 40 chr3 10347196 10347369 -207689789 + MIR SINE MIR 33 202 -60 201 171 0 0 chr3 10347461 10347496 -207689662 + A-rich Low_complexity Low_complexity 1 35 0 322 302 88 44 chr3 10347825 10348030 -207689128 - L2 LINE L2 0 3313 3100 228 204 161 86 chr3 10348076 10348169 -207688989 - MIR SINE MIR -82 180 81 30 45 0 0 chr3 10348902 10348946 -207688212 + AT_rich Low_complexity Low_complexity 1 44 0 1722 88 4 0 chr3 10349280 10349506 -207687652 - AluSp SINE Alu 0 313 87 413 310 44 96 chr3 10349556 10349985 -207687173 + L2 LINE L2 2856 3262 -10 26 0 0 0 chr3 10350696 10350722 -207686436 + AT_rich Low_complexity Low_complexity 1 26 0 304 312 11 0 chr3 10350926 10351019 -207686139 - MIR SINE MIR -109 153 60 197 242 32 74 chr3 10351007 10351102 -207686056 - MIR SINE MIR -134 128 38 * 687 284 38 30 chr3 10352211 10352363 -207684795 + MIR SINE MIR 13 169 -93 192 40 0 0 chr3 10352363 10352388 -207684770 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 687 284 38 30 chr3 10352388 10352471 -207684687 + MIR SINE MIR 169 250 -12 228 250 69 0 chr3 10352603 10352675 -207684483 - L1P4 LINE L1 -714 5452 5376 319 304 6 82 chr3 10352741 10352912 -207684246 - MIR SINE MIR -71 191 34 565 216 35 9 chr3 10353183 10353299 -207683859 + FLAM_A SINE Alu 4 122 -11 968 248 98 15 chr3 10353522 10353857 -207683301 + L1ME2 LINE L1 5362 5724 -440 1433 266 93 30 chr3 10353863 10354302 -207682856 + LTR40a LTR ERVL 5 471 -48 1027 250 146 8 chr3 10354315 10354699 -207682459 + L1ME2 LINE L1 5727 6163 -1 545 332 30 17 chr3 10354711 10354943 -207682215 + MIR SINE MIR 28 262 0 23 0 0 0 chr3 10355360 10355383 -207681775 + AT_rich Low_complexity Low_complexity 1 23 0 2138 126 0 3 chr3 10355493 10355795 -207681363 - AluSx SINE Alu -11 301 1 21 36 0 0 chr3 10355805 10355833 -207681325 + AT_rich Low_complexity Low_complexity 1 28 0 392 227 117 63 chr3 10355913 10356213 -207680945 + L1MEd LINE L1 941 1256 -4863 1053 258 95 58 chr3 10356314 10356810 -207680348 - ERVL LTR ERVL -783 4981 4468 2959 248 75 44 chr3 10357059 10358333 -207678825 - L1M4 LINE L1 -1544 4602 3370 1580 172 34 27 chr3 10358333 10358629 -207678529 - AluJb SINE Alu -14 298 1 2959 248 75 44 chr3 10358629 10358685 -207678473 - L1M4 LINE L1 -2776 3370 3317 2121 112 0 41 chr3 10358685 10358853 -207678305 - AluSq SINE Alu -12 301 150 2155 99 0 47 chr3 10358853 10359175 -207677983 - AluY SINE Alu -4 307 1 2121 112 0 41 chr3 10359175 10359320 -207677838 - AluSq SINE Alu -163 150 1 2959 248 75 44 chr3 10359320 10359474 -207677684 - L1M4 LINE L1 -2829 3317 3070 580 239 89 28 chr3 10359488 10359668 -207677490 - MER58C DNA MER1_type -1 214 24 418 269 96 90 chr3 10359777 10360089 -207677069 - L1ME LINE L1 -5480 590 277 180 0 0 0 chr3 10360093 10360113 -207677045 + (CAT)n Simple_repeat Simple_repeat 2 21 0 222 261 185 0 chr3 10360280 10360345 -207676813 - MIR SINE MIR -173 89 13 198 309 73 29 chr3 10360343 10360479 -207676679 + MIR SINE MIR 111 252 -10 * 182 361 21 10 chr3 10360610 10360707 -207676451 + L2 LINE L2 2562 2659 -655 26 0 0 0 chr3 10360707 10360733 -207676425 + AT_rich Low_complexity Low_complexity 1 26 0 692 359 51 19 chr3 10361173 10361585 -207675573 - L2 LINE L2 -461 2853 2429 533 273 98 30 chr3 10361585 10362021 -207675137 - LTR33 LTR ERVL 0 521 1 505 332 118 19 chr3 10362021 10362292 -207674866 - L2 LINE L2 -891 2423 2126 1555 246 47 13 chr3 10362314 10362761 -207674397 + LTR40b LTR ERVL 1 462 0 288 320 176 35 chr3 10362812 10363068 -207674090 - L2 LINE L2 -2791 523 232 279 325 119 6 chr3 10363077 10363237 -207673921 - L2 LINE L2 -2905 409 232 5419 198 35 9 chr3 10363672 10365657 -207671501 - L1PA15 LINE L1 -4 6161 4127 218 253 0 21 chr3 10366174 10366269 -207670889 + CT-rich Low_complexity Low_complexity 3 95 0 622 274 153 21 chr3 10366310 10366828 -207670330 - L1MC5 LINE L1 -64 7897 7312 326 244 17 52 chr3 10368539 10368654 -207668504 + MIR SINE MIR 138 248 -14 2257 100 7 3 chr3 10369625 10369934 -207667224 - AluSx SINE Alu -2 310 1 5005 35 0 3 chr3 10370921 10371516 -207665642 - L1PA3 LINE L1 0 6155 5563 556 238 103 33 chr3 10371516 10371730 -207665428 - MLT1L LTR MaLR -368 247 19 334 253 12 0 chr3 10371880 10371963 -207665195 + MER103 DNA DNA 65 148 -18 21 36 0 0 chr3 10371963 10371991 -207665167 + AT_rich Low_complexity Low_complexity 1 28 0 247 329 76 40 chr3 10372390 10373222 -207663936 + L1MC4a LINE L1 4372 5233 -913 1211 236 22 31 chr3 10373311 10373671 -207663487 + L1MC4a LINE L1 5342 5698 -2110 265 360 11 11 chr3 10373702 10373880 -207663278 + L1MC4a LINE L1 6414 6591 -1217 327 208 104 10 chr3 10374049 10374145 -207663013 - MER103 DNA DNA -10 156 52 188 389 44 0 chr3 10374395 10374485 -207662673 - L2 LINE L2 -5 3308 3215 190 333 0 49 chr3 10374590 10374671 -207662487 - L2 LINE L2 -262 3010 2934 388 310 117 28 chr3 10374737 10374979 -207662179 + MIR SINE MIR 3 262 0 261 0 0 0 chr3 10375735 10375764 -207661394 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 211 0 0 chr3 10376107 10376159 -207660999 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 2909 196 63 114 chr3 10376330 10377259 -207659899 - MER21A LTR ERV1 -28 903 22 459 0 0 0 chr3 10377269 10377320 -207659838 + (TC)n Simple_repeat Simple_repeat 1 51 0 4653 246 74 25 chr3 10377434 10379049 -207658109 + L1MC4a LINE L1 6012 7705 -103 417 272 28 72 chr3 10379537 10379717 -207657441 - MIR SINE MIR -14 248 77 303 413 39 7 chr3 10380118 10380273 -207656885 - MIR3 SINE MIR -21 187 28 736 293 175 3 chr3 10380770 10381230 -207655928 + MLT1G1 LTR MaLR 5 594 -1 448 203 30 66 chr3 10382543 10382616 -207654542 + MER54A LTR ERVL 262 336 -489 1933 148 32 51 chr3 10382616 10382987 -207654171 - THE1B LTR MaLR 0 364 1 448 203 30 66 chr3 10382987 10383041 -207654117 + MER54A LTR ERVL 336 566 -259 270 0 0 0 chr3 10383310 10383340 -207653818 + (A)n Simple_repeat Simple_repeat 1 30 0 840 211 92 13 chr3 10385473 10385700 -207651458 - MLT2B1 LTR ERVL -275 245 1 410 287 73 90 chr3 10386948 10387235 -207649923 - L2 LINE L2 -440 2874 2595 563 222 102 40 chr3 10387235 10387411 -207649747 - MER5A DNA MER1_type -2 187 1 410 287 73 90 chr3 10387411 10387545 -207649613 - L2 LINE L2 -719 2595 2460 2441 67 10 3 chr3 10387759 10388057 -207649101 + AluY SINE Alu 1 300 -11 1183 119 0 0 chr3 10388057 10388217 -207648941 + AluSg/x SINE Alu 134 293 -19 206 322 61 17 chr3 10389357 10389472 -207647686 - L2 LINE L2 -8 3264 3145 217 372 80 9 chr3 10390096 10390209 -207646949 + L2 LINE L2 3151 3271 -1 2160 108 7 0 chr3 10390299 10390596 -207646562 - AluY SINE Alu -11 300 2 467 261 13 78 chr3 10391602 10391755 -207645403 + MIR SINE MIR 112 254 -8 1699 152 56 58 chr3 10391808 10392184 -207644974 + THE1C LTR MaLR 1 375 0 220 231 0 0 chr3 10392901 10392940 -207644218 - L2 LINE L2 -263 3050 3012 548 275 75 25 chr3 10393122 10393362 -207643796 + MER102a DNA MER1_type 63 314 -16 21 0 0 0 chr3 10393738 10393759 -207643399 + AT_rich Low_complexity Low_complexity 1 21 0 237 336 93 19 chr3 10394179 10394286 -207642872 + MIR SINE MIR 38 152 -110 1904 229 43 87 chr3 10394394 10395014 -207642144 - MLT1E2 LTR MaLR 0 626 1 2033 172 50 35 chr3 10395097 10395521 -207641637 + MSTB1 LTR MaLR 1 430 -2 398 176 0 0 chr3 10396163 10396231 -207640927 + L1M4 LINE L1 5585 5652 -532 838 223 74 61 chr3 10396305 10396396 -207640762 - MER110A LTR ERV1 0 468 380 1620 176 3 31 chr3 10396396 10396686 -207640472 + AluJo SINE Alu 1 282 -30 411 21 0 0 chr3 10396694 10396742 -207640416 + (GA)n Simple_repeat Simple_repeat 1 48 0 838 223 74 61 chr3 10396742 10396960 -207640198 - MER110A LTR ERV1 -94 374 170 404 226 59 0 chr3 10397043 10397145 -207640013 - MER110A LTR ERV1 -291 177 70 612 245 71 61 chr3 10399289 10399476 -207637682 + MIR SINE MIR 17 208 -54 2131 122 0 13 chr3 10399476 10399787 -207637371 + AluSc SINE Alu 1 307 -2 612 245 71 61 chr3 10399787 10399811 -207637347 + MIR SINE MIR 208 230 -32 201 268 63 35 chr3 10402162 10402285 -207634873 + MIR SINE MIR 23 154 -62 586 298 67 25 chr3 10402812 10403050 -207634108 - MIR SINE MIR -13 249 2 186 288 123 49 chr3 10403250 10403413 -207633745 - L2 LINE L2 -2 3270 3096 191 366 11 54 chr3 10403937 10404030 -207633128 - MER5A DNA MER1_type -3 186 98 1810 156 13 57 chr3 10404288 10404603 -207632555 - AluJb SINE Alu -11 301 1 434 297 58 0 chr3 10404696 10404834 -207632324 + MIR SINE MIR 46 191 -71 2360 97 0 3 chr3 10405116 10405426 -207631732 + AluY SINE Alu 1 309 -2 220 366 20 0 chr3 10406174 10406275 -207630883 - MIR SINE MIR -57 205 103 438 312 115 58 chr3 10406385 10406963 -207630195 - L2 LINE L2 -87 3226 2598 239 214 29 0 chr3 10406965 10407035 -207630123 + (TA)n Simple_repeat Simple_repeat 2 73 0 569 222 30 0 chr3 10407173 10407340 -207629818 - Charlie7 DNA MER1_type -253 2359 2188 310 268 65 14 chr3 10407503 10407641 -207629517 - Charlie7 DNA MER1_type -2120 492 348 214 211 19 106 chr3 10407699 10407803 -207629355 - MIR3 SINE MIR -17 191 97 245 226 19 0 chr3 10407835 10407888 -207629270 - L2 LINE L2 -38 3275 3222 1220 288 63 31 chr3 10407949 10408487 -207628671 + MLT1F1 LTR MaLR 11 565 -2 200 206 0 0 chr3 10409482 10409516 -207627642 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1206 205 92 68 chr3 10409550 10409994 -207627164 + MSTB2 LTR MaLR 1 455 -2 4259 247 158 44 chr3 10409994 10411550 -207625608 + MLT1F1-int LTR MaLR 2 1735 0 1097 225 132 48 chr3 10411550 10411968 -207625190 + MSTB2 LTR MaLR 1 453 -4 270 0 0 0 chr3 10412069 10412099 -207625059 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 192 304 101 0 chr3 10412240 10412309 -207624849 - MIR SINE MIR -32 230 155 250 250 0 16 chr3 10412359 10412423 -207624735 + MER112 DNA MER1_type 12 74 -186 257 291 133 12 chr3 10412535 10412700 -207624458 - MIR SINE MIR -44 218 34 22 0 0 0 chr3 10413062 10413084 -207624074 + AT_rich Low_complexity Low_complexity 1 22 0 336 352 81 12 chr3 10413955 10414202 -207622956 + L1ME LINE L1 5485 5748 -373 21 57 0 0 chr3 10414280 10414315 -207622843 + AT_rich Low_complexity Low_complexity 1 35 0 257 375 27 9 chr3 10414326 10414438 -207622720 + L2 LINE L2 3199 3312 -1 180 0 0 0 chr3 10414623 10414643 -207622515 + (TA)n Simple_repeat Simple_repeat 1 20 0 298 337 189 0 chr3 10414879 10415048 -207622110 + MIR SINE MIR 49 249 -13 4347 249 61 27 chr3 10415175 10419186 -207617972 - L1MDb LINE L1 -2249 4157 17 941 239 79 98 chr3 10419389 10420171 -207616987 + L1MC4 LINE L1 7276 8042 0 566 290 49 27 chr3 10420923 10421106 -207616052 + MIR SINE MIR 20 206 -56 255 381 0 0 chr3 10421707 10421791 -207615367 + MIR SINE MIR 12 95 -167 430 315 147 23 chr3 10422138 10422620 -207614538 - MLT1H1 LTR MaLR -3 552 11 451 228 125 27 chr3 10422705 10422907 -207614251 - MIR SINE MIR 0 262 34 2328 80 3 0 chr3 10422986 10423273 -207613885 - AluY SINE Alu -13 298 11 409 250 17 26 chr3 10424318 10424434 -207612724 - MIR SINE MIR -15 247 133 355 329 21 14 chr3 10424682 10424825 -207612333 - MIR SINE MIR -72 190 47 254 376 62 1 chr3 10425215 10425436 -207611722 + MIR SINE MIR 17 249 -13 238 356 19 25 chr3 10425446 10425606 -207611552 - L3 LINE CR1 -387 1190 1032 223 303 45 34 chr3 10425613 10425702 -207611456 + MIR3 SINE MIR 98 187 -21 204 40 0 0 chr3 10425782 10425807 -207611351 + (TG)n Simple_repeat Simple_repeat 1 25 0 182 177 139 51 chr3 10426040 10426119 -207611039 - MIR SINE MIR -56 206 121 233 370 44 7 chr3 10427475 10427610 -207609548 + L2 LINE L2 2898 3037 -276 1393 240 61 16 chr3 10427639 10428018 -207609140 - MSTD LTR MaLR 0 396 1 5629 234 57 48 chr3 10428018 10429731 -207607427 - MSTD-int LTR MaLR 0 1735 9 1097 248 54 54 chr3 10429739 10430130 -207607028 - MSTD LTR MaLR 0 396 6 220 320 0 27 chr3 10430248 10430323 -207606835 + L2 LINE L2 3238 3310 -3 21 36 0 0 chr3 10431601 10431629 -207605529 + AT_rich Low_complexity Low_complexity 1 28 0 1227 198 115 114 chr3 10432149 10432695 -207604463 + MER44D DNA MER2_type 1 602 -3 181 333 51 62 chr3 10432850 10433027 -207604131 + L3b LINE CR1 1209 1383 -200 369 353 7 26 chr3 10433539 10433692 -207603466 + L2 LINE L2 3122 3271 -1 1446 203 33 0 chr3 10433875 10434181 -207602977 + MER58B DNA MER1_type 25 340 -1 1606 168 14 25 chr3 10435070 10435355 -207601803 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr3 10435364 10435387 -207601771 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 219 150 0 0 chr3 10435773 10435813 -207601345 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1246 203 21 0 chr3 10436686 10436967 -207600191 + L1MA4 LINE L1 6014 6300 0 321 324 145 6 chr3 10437189 10437368 -207599790 + MIR SINE MIR 57 260 -2 460 226 39 0 chr3 10438220 10438322 -207598836 + MIR SINE MIR 81 186 -76 744 181 44 93 chr3 10438465 10438691 -207598467 - MER20 DNA MER1_type -4 215 1 1560 174 9 76 chr3 10439071 10439399 -207597759 + AluJb SINE Alu 1 306 -6 2453 76 0 19 chr3 10439400 10439716 -207597442 + AluY SINE Alu 1 310 -1 1903 140 4 4 chr3 10440567 10440897 -207596261 - AluSx SINE Alu 0 336 7 250 286 0 0 chr3 10441043 10441099 -207596059 - MIR SINE MIR -155 107 52 412 228 100 74 chr3 10442163 10442364 -207594794 - MIR SINE MIR -47 215 14 1070 161 0 0 chr3 10442424 10442585 -207594573 + AluSg/x SINE Alu 133 293 -17 1161 260 91 61 chr3 10442925 10443433 -207593725 - MLT1G1 LTR MaLR -41 554 32 1812 188 46 6 chr3 10444505 10444856 -207592302 + MLT1A1 LTR MaLR 1 365 0 197 153 125 56 chr3 10445863 10445935 -207591223 - MIR SINE MIR -120 142 66 1046 216 35 109 chr3 10445954 10446357 -207590801 + MLT1A2 LTR MaLR 2 374 0 7696 23 0 0 chr3 10447326 10448486 -207588672 + L1PA3 LINE L1 4993 6152 -3 273 340 53 0 chr3 10448506 10448600 -207588558 + MER5A DNA MER1_type 35 133 -56 607 252 0 0 chr3 10448601 10448728 -207588430 - FLAM_A SINE Alu -6 127 1 9675 217 27 7 chr3 10448783 10452324 -207584834 - L1PA16 LINE L1 -27 6139 2542 245 297 16 0 chr3 10452465 10452529 -207584629 + L2 LINE L2 3204 3268 -4 227 247 34 45 chr3 10452689 10452778 -207584380 - L1ME LINE L1 -459 5662 5575 198 0 0 0 chr3 10453065 10453087 -207584071 + (TTG)n Simple_repeat Simple_repeat 2 23 0 6746 64 14 12 chr3 10453154 10454569 -207582589 - L1PA7 LINE L1 -3 6151 4739 8394 89 140 3 chr3 10454570 10455978 -207581180 - L1PA7 LINE L1 -1541 4605 3005 4308 107 5 32 chr3 10455974 10456719 -207580439 + L1PA7 LINE L1 2275 2999 -3147 * 2136 139 3 0 chr3 10457223 10457524 -207579634 - AluSx SINE Alu -10 302 1 652 257 89 25 chr3 10457528 10457730 -207579428 - MIR SINE MIR -45 217 3 232 250 117 0 chr3 10457730 10457787 -207579371 - MIR SINE MIR -61 147 84 216 97 0 0 chr3 10458496 10458527 -207578631 + (A)n Simple_repeat Simple_repeat 1 31 0 208 364 0 0 chr3 10458757 10458834 -207578324 + MIR SINE MIR 53 129 -133 344 351 0 0 chr3 10459008 10459085 -207578073 + MER91A DNA MER1_type 67 143 -53 198 364 0 11 chr3 10459318 10459406 -207577752 + MIR SINE MIR 9 95 -167 401 334 124 29 chr3 10459436 10459653 -207577505 - LTR16C LTR ERVL -63 428 170 1486 247 87 35 chr3 10459653 10460168 -207576990 + MLT1F LTR MaLR 1 542 0 401 334 124 29 chr3 10460168 10460264 -207576894 - LTR16C LTR ERVL -321 170 85 2160 137 0 6 chr3 10461309 10461622 -207575536 - AluSq SINE Alu -2 311 1 2403 86 0 3 chr3 10462605 10462907 -207574251 + AluSg1 SINE Alu 1 301 -8 2894 194 37 6 chr3 10463270 10463944 -207573214 + L1MB7 LINE L1 5471 6165 -19 447 248 4 26 chr3 10464011 10464212 -207572946 + L1ME3A LINE L1 5745 5940 -230 1676 229 31 11 chr3 10464989 10465447 -207571711 - MLT1C LTR MaLR 0 467 1 327 344 33 41 chr3 10465491 10465761 -207571397 + L2 LINE L2 2864 3131 -182 2231 109 7 0 chr3 10465762 10466056 -207571102 - AluSc SINE Alu -13 296 1 23 33 0 0 chr3 10466066 10466096 -207571062 + AT_rich Low_complexity Low_complexity 1 30 0 190 300 125 12 chr3 10466162 10466242 -207570916 + L2 LINE L2 3191 3279 -34 249 108 0 0 chr3 10466265 10466302 -207570856 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 272 292 56 0 chr3 10466413 10466502 -207570656 + MIR SINE MIR 66 159 -103 1434 183 44 7 chr3 10467369 10467643 -207569515 - AluJo SINE Alu -5 307 24 202 252 84 42 chr3 10467654 10467773 -207569385 + MIR SINE MIR 16 139 -123 196 308 112 95 chr3 10467873 10467936 -207569222 + L2 LINE L2 3099 3159 -113 681 237 25 30 chr3 10467936 10468172 -207568986 - MER106A DNA MER1_type -1 235 1 196 308 112 95 chr3 10468172 10468277 -207568881 + L2 LINE L2 3159 3270 -2 546 268 21 16 chr3 10468857 10469051 -207568107 + L1ME3A LINE L1 5942 6136 -34 371 253 133 19 chr3 10469109 10469267 -207567891 + MIR SINE MIR 87 262 0 231 265 41 20 chr3 10469403 10469501 -207567657 - L1MC4 LINE L1 -17 8025 7926 2630 43 0 0 chr3 10470405 10470708 -207566450 - AluY SINE Alu 0 311 9 592 256 6 36 chr3 10470741 10470909 -207566249 + MER5B DNA MER1_type 6 168 -10 2259 176 26 14 chr3 10471287 10471714 -207565444 + MSTB1 LTR MaLR 1 432 0 1280 227 68 49 chr3 10472270 10472698 -207564460 - MER63B DNA MER1_type 0 436 1 307 288 72 85 chr3 10473141 10473377 -207563781 - L1MC4a LINE L1 -1761 6047 5815 532 194 12 31 chr3 10473459 10473788 -207563370 + CT-rich Low_complexity Low_complexity 1 322 0 369 0 0 0 chr3 10473788 10473829 -207563329 + (TG)n Simple_repeat Simple_repeat 2 42 0 211 316 52 73 chr3 10473989 10474125 -207563033 + MIR SINE MIR 14 146 -116 244 399 21 7 chr3 10474127 10474270 -207562888 + MIR SINE MIR 2 146 -116 1470 259 42 24 chr3 10474271 10474770 -207562388 + LTR40a LTR ERVL 12 519 0 45 19 0 0 chr3 10474790 10474842 -207562316 + AT_rich Low_complexity Low_complexity 1 52 0 180 148 0 0 chr3 10474978 10475005 -207562153 + L2 LINE L2 3216 3242 -30 1578 148 26 26 chr3 10475008 10475319 -207561839 - THE1C LTR MaLR 0 375 65 8371 125 12 29 chr3 10475321 10476676 -207560482 - THE1C-int LTR MaLR -247 1333 2 2006 146 10 51 chr3 10476677 10477068 -207560090 - THE1C LTR MaLR 0 375 1 324 357 35 15 chr3 10477552 10477751 -207559407 - L2 LINE L2 -3 3310 3108 316 162 0 81 chr3 10477774 10477848 -207559310 - MLT1J2 LTR MaLR -38 412 345 505 274 22 15 chr3 10478211 10478346 -207558812 + MIR SINE MIR 16 151 -111 1686 205 55 3 chr3 10479212 10479559 -207557599 - MLT1A1 LTR MaLR 0 365 1 227 308 30 38 chr3 10479559 10479692 -207557466 + MIR SINE MIR 107 238 -24 397 310 51 112 chr3 10479752 10480126 -207557032 - L2 LINE L2 -4 3268 2918 182 365 49 71 chr3 10480179 10480546 -207556612 - L2 LINE L2 -510 2804 2446 26 30 0 0 chr3 10480948 10480981 -207556177 + AT_rich Low_complexity Low_complexity 1 33 0 184 169 14 141 chr3 10481118 10481189 -207555969 - L3b LINE CR1 -224 1359 1298 220 246 129 76 chr3 10481358 10481529 -207555629 + MIR SINE MIR 73 252 -10 480 304 19 19 chr3 10482643 10482804 -207554354 + MER5B DNA MER1_type 1 161 -17 1351 202 79 20 chr3 10482943 10483299 -207553859 - MLT1B LTR MaLR -11 379 3 475 227 213 13 chr3 10483715 10483865 -207553293 + MER5A DNA MER1_type 10 189 0 25 51 0 0 chr3 10484049 10484088 -207553070 + AT_rich Low_complexity Low_complexity 1 39 0 241 294 88 0 chr3 10484591 10484659 -207552499 + L2 LINE L2 3181 3254 -18 184 167 19 93 chr3 10484617 10484671 -207552487 + MIR SINE MIR 209 258 -4 * 23 33 0 0 chr3 10485555 10485585 -207551573 + AT_rich Low_complexity Low_complexity 1 30 0 207 284 45 34 chr3 10487067 10487155 -207550003 - L2 LINE L2 -40 3273 3185 469 309 176 5 chr3 10487434 10487644 -207549514 - MIR SINE MIR -2 260 15 27 0 0 0 chr3 10487854 10487881 -207549277 + AT_rich Low_complexity Low_complexity 1 27 0 261 343 25 29 chr3 10487933 10488079 -207549079 - MIR SINE MIR -46 162 16 211 293 40 27 chr3 10488516 10488591 -207548567 - L2 LINE L2 -68 3245 3170 237 360 20 39 chr3 10488853 10489006 -207548152 - L2 LINE L2 -548 2766 2617 200 369 72 18 chr3 10489165 10489276 -207547882 - L2 LINE L2 -793 2521 2405 198 0 0 0 chr3 10489314 10489336 -207547822 + (T)n Simple_repeat Simple_repeat 1 22 0 840 231 44 15 chr3 10489336 10489539 -207547619 - MER58A DNA MER1_type -15 209 1 22 35 0 0 chr3 10489566 10489595 -207547563 + AT_rich Low_complexity Low_complexity 1 29 0 541 196 40 111 chr3 10490535 10490676 -207546482 - LTR39 LTR ERV1 0 783 658 2256 112 3 3 chr3 10490676 10490988 -207546170 + AluSx SINE Alu 1 312 0 541 196 40 111 chr3 10490988 10491045 -207546113 - LTR39 LTR ERV1 -125 658 599 1197 176 43 79 chr3 10491097 10491426 -207545732 - LTR39 LTR ERV1 -456 327 11 816 153 13 38 chr3 10491471 10491628 -207545530 - THE1B LTR MaLR 0 364 212 6287 112 177 79 chr3 10491635 10493178 -207543980 + pTR5 LTR ERV1 743 2436 -2 1398 126 0 14 chr3 10493184 10493398 -207543760 - THE1B LTR MaLR -153 211 1 11499 96 9 2 chr3 10493398 10494968 -207542190 - THE1B-int LTR MaLR 0 1580 1 2328 133 3 35 chr3 10494968 10495344 -207541814 - THE1B LTR MaLR 0 364 1 789 253 6 6 chr3 10495428 10495606 -207541552 - MER5B DNA MER1_type 0 178 1 2167 94 0 11 chr3 10495748 10496034 -207541124 + AluY SINE Alu 1 283 -28 516 16 0 0 chr3 10496034 10496095 -207541063 + (TA)n Simple_repeat Simple_repeat 1 61 0 28 0 0 0 chr3 10497303 10497331 -207539827 + AT_rich Low_complexity Low_complexity 1 28 0 328 271 0 85 chr3 10497331 10497372 -207539786 - MLT1L LTR MaLR -181 434 391 2191 116 0 0 chr3 10497372 10497666 -207539492 - AluSg SINE Alu -14 296 3 328 271 0 85 chr3 10497666 10497742 -207539416 - MLT1L LTR MaLR -224 391 327 501 276 65 5 chr3 10500029 10500228 -207536930 - MLT1K LTR MaLR 0 588 378 679 222 99 0 chr3 10500414 10500585 -207536573 + MER5A DNA MER1_type 1 188 -1 229 316 0 13 chr3 10500593 10500669 -207536489 - MLT1K LTR MaLR -412 176 102 217 361 83 18 chr3 10501270 10501439 -207535719 - MER5A DNA MER1_type 0 189 10 * 238 340 110 0 chr3 10501436 10501536 -207535622 + MIR SINE MIR 12 122 -140 260 300 60 56 chr3 10505983 10506159 -207530999 - MER5B DNA MER1_type 0 178 12 363 299 31 0 chr3 10506604 10506731 -207530427 - MER117 DNA MER1_type -35 162 32 193 401 80 0 chr3 10507032 10507169 -207529989 - L2 LINE L2 -2 3270 3123 1955 238 31 53 chr3 10509365 10509736 -207527422 + L1ME1 LINE L1 5468 5817 -349 2121 128 0 0 chr3 10509736 10510025 -207527133 + AluSx SINE Alu 1 289 -23 1955 238 31 53 chr3 10510025 10510363 -207526795 + L1ME1 LINE L1 5817 6161 -5 213 283 17 0 chr3 10510528 10510588 -207526570 + MIR SINE MIR 202 262 0 207 361 84 40 chr3 10510674 10510923 -207526235 - L2 LINE L2 -410 2904 2645 834 257 10 5 chr3 10513529 10513735 -207523423 + MER58A DNA MER1_type 11 217 -7 611 325 94 35 chr3 10513744 10514224 -207522934 + L2 LINE L2 2805 3312 -1 411 344 0 21 chr3 10514559 10514800 -207522358 + L1ME LINE L1 5467 5702 -419 519 328 21 5 chr3 10514907 10515093 -207522065 - MIR SINE MIR -9 253 65 596 237 0 0 chr3 10515163 10515277 -207521881 + MIR SINE MIR 88 201 -61 917 300 132 26 chr3 10515303 10515845 -207521313 - L2 LINE L2 -14 3299 2687 227 309 0 15 chr3 10515853 10515921 -207521237 + MIR SINE MIR 186 252 -10 577 292 242 11 chr3 10516533 10517089 -207520069 - L2 LINE L2 0 3313 2625 366 261 59 59 chr3 10517513 10517632 -207519526 + MER91C DNA MER1_type 22 140 0 219 114 0 0 chr3 10518149 10518184 -207518974 + (TG)n Simple_repeat Simple_repeat 2 36 0 606 285 126 22 chr3 10518276 10518546 -207518612 - L2 LINE L2 0 3313 3016 1838 284 127 51 chr3 10518801 10520196 -207516962 - L2 LINE L2 -218 3095 1586 2167 169 70 5 chr3 10520231 10520633 -207516525 - MSTA LTR MaLR 0 428 1 437 211 78 0 chr3 10520633 10520723 -207516435 - MER58 DNA MER1_type -118 97 1 262 330 61 9 chr3 10522237 10522352 -207514806 - MIR3 SINE MIR -25 183 63 257 320 39 0 chr3 10523747 10523850 -207513308 + MIR SINE MIR 37 143 -65 205 290 65 43 chr3 10524164 10524257 -207512901 + L2 LINE L2 2852 2946 -326 1047 196 66 35 chr3 10524257 10524574 -207512584 + Charlie4a DNA MER1_type 181 507 -1 236 292 91 13 chr3 10524785 10524939 -207512219 - MLT1L LTR MaLR 0 615 450 189 0 0 0 chr3 10525291 10525312 -207511846 + (A)n Simple_repeat Simple_repeat 1 21 0 1021 215 11 76 chr3 10526997 10527379 -207509779 - LTR37A LTR ERV1 -52 374 18 1798 238 68 100 chr3 10527415 10528582 -207508576 - MER31-int LTR ERV1 -692 4244 3116 211 361 41 10 chr3 10528797 10528894 -207508264 - MER5B DNA MER1_type -78 100 1 853 235 27 23 chr3 10528987 10529208 -207507950 - MER58A DNA MER1_type -2 222 1 2106 116 0 20 chr3 10529741 10530044 -207507114 - AluSx SINE Alu -14 298 2 248 298 43 0 chr3 10530519 10530613 -207506545 + Charlie1 DNA MER1_type 2635 2732 -29 5831 107 19 0 chr3 10530943 10532335 -207504823 - L1PA14 LINE L1 0 6161 4744 1151 285 101 32 chr3 10532494 10533027 -207504131 - L2 LINE L2 -1547 1767 1198 562 273 12 6 chr3 10534322 10534487 -207502671 + MIR SINE MIR 87 252 -10 196 337 12 12 chr3 10534760 10534843 -207502315 - MIR3 SINE MIR -11 197 115 245 232 253 0 chr3 10534891 10534990 -207502168 - MER5A DNA MER1_type -22 167 44 524 289 80 30 chr3 10535359 10535560 -207501598 + MIR SINE MIR 7 217 -45 182 246 33 16 chr3 10535580 10535641 -207501517 - L2 LINE L2 -49 3223 3162 392 250 56 21 chr3 10535751 10535895 -207501263 + L3 LINE CR1 1192 1340 -237 1985 134 0 3 chr3 10537192 10537496 -207499662 + AluSx SINE Alu 1 303 0 233 222 37 25 chr3 10537509 10537590 -207499568 - L1ME3A LINE L1 -97 6073 5992 270 275 19 62 chr3 10538387 10538547 -207498611 - L1M4c LINE L1 -4966 1418 1266 371 267 20 14 chr3 10539069 10539215 -207497943 + (TA)n Simple_repeat Simple_repeat 1 147 0 283 308 101 49 chr3 10540097 10540306 -207496852 + L1M4 LINE L1 4563 4760 -1386 939 90 45 0 chr3 10540306 10540439 -207496719 + MER85 DNA T2_type 1 139 0 283 308 101 49 chr3 10540439 10540616 -207496542 + L1M4 LINE L1 4760 4969 -1177 265 303 97 36 chr3 10541177 10541342 -207495816 + MIR SINE MIR 87 261 -1 396 263 69 46 chr3 10541410 10541585 -207495573 + MIR SINE MIR 79 257 -5 375 206 63 16 chr3 10543421 10543547 -207493611 + MER53 DNA DNA 55 186 -3 290 77 0 0 chr3 10544091 10544130 -207493028 - MADE1 DNA Mariner -41 39 1 243 321 32 22 chr3 10545203 10545325 -207491833 - MIR SINE MIR -46 216 91 214 253 160 27 chr3 10545412 10545487 -207491671 - L2 LINE L2 -1 3271 3187 204 338 29 0 chr3 10545634 10545702 -207491456 - L2 LINE L2 -65 3207 3138 1146 219 302 16 chr3 10545892 10546336 -207490822 - MLT2F LTR ERVL -88 575 5 188 283 98 22 chr3 10547255 10547347 -207489811 + MIR SINE MIR 91 189 -73 261 270 230 0 chr3 10547393 10547545 -207489613 - L2 LINE L2 -154 3159 2973 279 320 48 10 chr3 10547843 10547946 -207489212 + MIR SINE MIR 150 256 -6 213 310 0 0 chr3 10548108 10548166 -207488992 - L2 LINE L2 -225 3047 2990 186 349 106 0 chr3 10548650 10548716 -207488442 - MIR SINE MIR -63 145 73 886 191 12 0 chr3 10548716 10548878 -207488280 + AluJo SINE Alu 119 282 -30 2015 196 76 5 chr3 10549616 10550050 -207487108 - MLT1C LTR MaLR 0 467 3 1923 166 27 14 chr3 10550833 10551201 -207485957 - MLT1B LTR MaLR 0 390 18 194 287 178 10 chr3 10551435 10551536 -207485622 - L2 LINE L2 -4 3309 3192 181 286 18 36 chr3 10551583 10551639 -207485519 + L2 LINE L2 3188 3242 -30 236 250 31 16 chr3 10551769 10551833 -207485325 + MIR3 SINE MIR 120 184 -24 246 333 12 12 chr3 10551843 10551927 -207485231 - L2 LINE L2 -198 3074 2991 1205 227 69 40 chr3 10552475 10552854 -207484304 - MLT1B LTR MaLR 0 390 1 191 374 0 30 chr3 10554712 10554811 -207482347 - L2 LINE L2 -49 3264 3169 874 211 0 63 chr3 10554811 10555034 -207482124 - MER20 DNA MER1_type -1 218 10 398 331 150 30 chr3 10555114 10555526 -207481632 - L2 LINE L2 -200 3113 2647 808 239 109 13 chr3 10556427 10556665 -207480493 - MIR SINE MIR 0 262 2 207 0 0 0 chr3 10557690 10557713 -207479445 + (A)n Simple_repeat Simple_repeat 1 23 0 2355 78 0 28 chr3 10557714 10558034 -207479124 + AluY SINE Alu 1 311 0 796 227 77 0 chr3 10558203 10558397 -207478761 + MER3 DNA MER1_type 1 209 0 1701 173 7 26 chr3 10558880 10559186 -207477972 - AluJo SINE Alu -12 300 1 219 340 60 50 chr3 10559384 10559484 -207477674 + L2 LINE L2 2988 3088 -184 700 267 0 12 chr3 10560343 10560515 -207476643 - FRAM SINE Alu -3 173 4 1077 209 51 13 chr3 10562942 10563250 -207473908 - L1ME2 LINE L1 -29 6135 5818 324 274 32 95 chr3 10564698 10564888 -207472270 - MER5B DNA MER1_type 0 178 1 268 338 0 0 chr3 10565389 10565466 -207471692 - MER5A DNA MER1_type -109 80 4 231 314 14 0 chr3 10565950 10566020 -207471138 + L2 LINE L2 3239 3309 -4 257 300 32 12 chr3 10566375 10566483 -207470675 + MIR SINE MIR 6 118 -90 296 300 18 0 chr3 10566647 10566757 -207470401 - Charlie8 DNA MER1_type -2242 175 64 214 203 14 14 chr3 10567214 10567288 -207469870 + (TA)n Simple_repeat Simple_repeat 2 75 0 224 217 22 0 chr3 10567322 10567368 -207469790 + (TG)n Simple_repeat Simple_repeat 2 48 0 300 322 0 0 chr3 10567368 10567458 -207469700 - L1MC4 LINE L1 -1339 6703 6614 2423 97 0 0 chr3 10568477 10568787 -207468371 + AluSg SINE Alu 1 310 0 2105 113 0 7 chr3 10569389 10569702 -207467456 - AluSg SINE Alu 0 311 1 195 333 228 21 chr3 10570607 10571072 -207466086 - L2 LINE L2 -349 2923 2372 24 67 0 0 chr3 10571450 10571495 -207465663 + AT_rich Low_complexity Low_complexity 1 45 0 2329 102 0 7 chr3 10571575 10571878 -207465280 + AluSx SINE Alu 1 301 -11 2402 47 0 60 chr3 10572280 10572598 -207464560 - AluY SINE Alu -12 299 1 350 330 18 41 chr3 10573418 10573639 -207463519 + MIR SINE MIR 19 234 -28 1085 153 0 0 chr3 10573923 10574093 -207463065 - AluSg/x SINE Alu -7 305 136 505 237 15 0 chr3 10575366 10575497 -207461661 + MER94 DNA DNA 2 134 0 308 264 104 35 chr3 10575648 10575792 -207461366 + MIR SINE MIR 28 181 -81 253 297 73 70 chr3 10576140 10576413 -207460745 + L2 LINE L2 2907 3180 -133 224 292 67 58 chr3 10576988 10577108 -207460050 - MIR SINE MIR -51 211 91 303 297 11 11 chr3 10577774 10577865 -207459293 + MIR SINE MIR 2 92 -170 227 170 57 0 chr3 10578670 10578723 -207458435 - MLT1D LTR MaLR -401 104 49 324 293 153 19 chr3 10579129 10579286 -207457872 + MIR SINE MIR 58 235 -27 2163 120 3 22 chr3 10579418 10579734 -207457424 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr3 10579758 10579788 -207457370 + (CA)n Simple_repeat Simple_repeat 1 30 0 186 231 0 0 chr3 10582692 10582731 -207454427 + L2 LINE L2 3258 3296 -17 538 326 19 25 chr3 10583336 10583658 -207453500 + L1MC4 LINE L1 7271 7590 -452 * 2570 237 66 22 chr3 10583651 10584723 -207452435 + L1ME1 LINE L1 4428 5601 -565 2441 62 0 3 chr3 10584723 10585031 -207452127 + AluY SINE Alu 1 307 -4 2570 237 66 22 chr3 10585031 10585578 -207451580 + L1ME1 LINE L1 5601 6122 -44 424 203 122 14 chr3 10585474 10585622 -207451536 + L1MA10 LINE L1 6169 6332 -2 * 467 284 130 17 chr3 10585624 10586033 -207451125 + L1MC4 LINE L1 7588 8042 0 896 250 43 20 chr3 10586351 10586651 -207450507 - LTR16A LTR ERVL -49 401 95 185 324 28 39 chr3 10587010 10587126 -207450032 - MIR SINE MIR -119 89 7 1141 68 7 0 chr3 10587728 10587876 -207449282 - L1PA7 LINE L1 -7 6147 5999 28 29 0 0 chr3 10588164 10588199 -207448959 + AT_rich Low_complexity Low_complexity 1 35 0 2610 36 0 13 chr3 10588376 10588685 -207448473 - AluY SINE Alu -6 305 1 203 321 75 38 chr3 10588902 10589008 -207448150 + MIR3 SINE MIR 7 116 -92 197 162 0 27 chr3 10589202 10589239 -207447919 - L2 LINE L2 -95 3218 3183 374 300 29 43 chr3 10589619 10589759 -207447399 - L2 LINE L2 -556 2758 2621 27 62 0 0 chr3 10589946 10589994 -207447164 + AT_rich Low_complexity Low_complexity 1 48 0 1265 170 9 27 chr3 10590268 10590492 -207446666 + AluJo SINE Alu 75 294 -18 263 355 11 0 chr3 10591540 10591633 -207445525 - L2 LINE L2 -6 3266 3173 208 162 27 0 chr3 10591650 10591687 -207445471 + CT-rich Low_complexity Low_complexity 2 39 0 311 399 28 5 chr3 10591767 10591980 -207445178 - L2 LINE L2 -218 3054 2837 249 290 21 21 chr3 10592202 10592295 -207444863 - MIR SINE MIR -136 126 34 521 313 47 5 chr3 10592456 10592648 -207444510 - L2 LINE L2 -191 3081 2882 197 279 49 0 chr3 10595169 10595230 -207441928 - MIR SINE MIR -151 111 48 2319 55 41 10 chr3 10595821 10596114 -207441044 - AluY SINE Alu -9 302 1 443 284 40 27 chr3 10596290 10596438 -207440720 - MIR SINE MIR -3 259 110 2243 126 0 0 chr3 10597408 10597709 -207439449 - AluSq SINE Alu -10 303 3 906 137 167 18 chr3 10597716 10597943 -207439215 - L1MA8 LINE L1 0 6291 6031 465 292 19 19 chr3 10599034 10599188 -207437970 - MIR SINE MIR 0 262 109 425 84 0 84 chr3 10599228 10599299 -207437859 - AluY SINE Alu -45 266 202 1320 171 54 0 chr3 10599602 10599658 -207437500 + Tigger3(Golem) DNA MER2_type 2 54 -2974 207 0 0 0 chr3 10599667 10599690 -207437468 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1597 135 96 4 chr3 10599690 10599940 -207437218 - AluSx SINE Alu -22 290 14 1320 171 54 0 chr3 10599940 10600182 -207436976 + Tigger3(Golem) DNA MER2_type 54 3028 0 2358 93 0 3 chr3 10600199 10600511 -207436647 + AluY SINE Alu 1 311 0 915 196 127 18 chr3 10600524 10600744 -207436414 - MIR SINE MIR -13 249 6 2444 131 120 0 chr3 10600978 10601452 -207435706 + L1PA16 LINE L1 5635 6165 -1 27 0 0 0 chr3 10601496 10601523 -207435635 + AT_rich Low_complexity Low_complexity 1 27 0 305 353 75 8 chr3 10604941 10605074 -207432084 + MIR SINE MIR 29 170 -92 2542 67 3 3 chr3 10605273 10605586 -207431572 + AluSp SINE Alu 1 313 0 297 0 0 0 chr3 10605759 10605792 -207431366 + (CA)n Simple_repeat Simple_repeat 2 34 0 498 350 51 5 chr3 10606060 10606274 -207430884 - MIR SINE MIR -38 224 1 722 192 13 98 chr3 10606829 10607053 -207430105 + MER3 DNA MER1_type 5 209 0 205 191 0 0 chr3 10613604 10613646 -207423512 + (TAA)n Simple_repeat Simple_repeat 1 42 0 211 326 141 0 chr3 10614649 10614741 -207422417 + MIR SINE MIR 45 149 -113 2199 123 0 0 chr3 10614868 10615178 -207421980 - AluSg SINE Alu 0 310 1 306 302 63 0 chr3 10615858 10615981 -207421177 - MIR SINE MIR -68 140 39 186 133 0 0 chr3 10616185 10616215 -207420943 + (T)n Simple_repeat Simple_repeat 1 30 0 392 240 232 0 chr3 10617401 10617526 -207419632 + MIR SINE MIR 107 260 -2 204 243 27 95 chr3 10618108 10618182 -207418976 - MER5A DNA MER1_type -103 86 18 783 275 25 21 chr3 10618818 10619058 -207418100 + MIR SINE MIR 16 256 -6 793 220 59 0 chr3 10619100 10619286 -207417872 - MER3 DNA MER1_type -12 197 1 279 240 175 39 chr3 10620544 10620678 -207416480 - MIR SINE MIR -62 146 36 881 276 35 0 chr3 10621536 10621768 -207415390 - MIR SINE MIR -16 246 7 486 220 9 0 chr3 10621834 10621943 -207415215 - MER20 DNA MER1_type 0 219 110 2338 86 3 10 chr3 10624518 10624821 -207412337 - AluY SINE Alu -10 301 1 183 370 74 0 chr3 10625063 10625144 -207412014 + L2 LINE L2 3151 3237 -35 330 276 234 0 chr3 10625437 10625582 -207411576 - MER5A DNA MER1_type 0 189 11 440 244 40 45 chr3 10626202 10626378 -207410780 - MER5B DNA MER1_type -3 175 1 863 230 6 0 chr3 10626401 10626566 -207410592 + MER5A DNA MER1_type 6 171 -18 277 313 0 12 chr3 10626802 10626885 -207410273 - L3 LINE CR1 -92 1485 1404 375 327 46 0 chr3 10626885 10627038 -207410120 - MIR SINE MIR -24 238 79 417 307 153 70 chr3 10628844 10629287 -207407871 - L2 LINE L2 -338 2976 2497 975 264 105 24 chr3 10629678 10630060 -207407098 - MER77 LTR ERV1 -15 590 178 216 0 0 0 chr3 10631150 10631174 -207405984 + (T)n Simple_repeat Simple_repeat 1 24 0 292 279 27 27 chr3 10631632 10631743 -207405415 - L2 LINE L2 -184 3088 2978 211 200 43 0 chr3 10632061 10632131 -207405027 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 80 0 0 chr3 10632449 10632499 -207404659 + AT_rich Low_complexity Low_complexity 1 50 0 198 286 69 57 chr3 10634066 10634241 -207402917 + L2 LINE L2 2937 3113 -159 617 251 108 71 chr3 10634387 10634792 -207402366 - L2 LINE L2 -185 3128 2712 246 281 108 19 chr3 10635365 10635481 -207401677 + MIR SINE MIR 51 172 -67 185 154 26 0 chr3 10635626 10635665 -207401493 + CT-rich Low_complexity Low_complexity 2 41 0 344 207 0 0 chr3 10635859 10635941 -207401217 - L1MB1 LINE L1 -4 6185 6104 1103 221 58 68 chr3 10635995 10636344 -207400814 - MLT1C LTR MaLR -75 392 46 2222 109 10 19 chr3 10636344 10636657 -207400501 - AluSx SINE Alu -2 310 1 1103 221 58 68 chr3 10636657 10636701 -207400457 - MLT1C LTR MaLR -421 46 3 381 265 105 25 chr3 10636724 10636886 -207400272 + MIR SINE MIR 12 186 -76 276 30 0 0 chr3 10637011 10637044 -207400114 + (T)n Simple_repeat Simple_repeat 1 33 0 414 266 219 0 chr3 10637706 10637834 -207399324 + MER5A DNA MER1_type 27 182 -7 1569 177 23 43 chr3 10638397 10638697 -207398461 + AluJo SINE Alu 1 294 -18 505 279 110 50 chr3 10638746 10638965 -207398193 - MIR SINE MIR -2 260 29 546 253 188 10 chr3 10641262 10641464 -207395694 + MIR SINE MIR 25 262 0 1989 82 0 0 chr3 10642750 10642995 -207394163 + AluY SINE Alu 1 245 -66 423 0 0 0 chr3 10642999 10643046 -207394112 + (CA)n Simple_repeat Simple_repeat 2 48 0 214 313 0 24 chr3 10643155 10643238 -207393920 + (ATG)n Simple_repeat Simple_repeat 3 83 0 314 337 112 5 chr3 10643253 10643458 -207393700 - MIR SINE MIR -34 228 2 238 191 43 0 chr3 10643988 10644035 -207393123 + L2 LINE L2 3224 3272 0 618 273 12 12 chr3 10644131 10644292 -207392866 + MIR SINE MIR 92 252 -10 609 250 20 46 chr3 10645461 10645657 -207391501 - MIR SINE MIR -4 258 69 2052 126 17 0 chr3 10645668 10645961 -207391197 - AluSx SINE Alu -14 298 1 342 67 0 0 chr3 10646027 10646072 -207391086 - Alu SINE Alu -20 282 238 294 266 184 5 chr3 10646219 10646426 -207390732 - L1MC4 LINE L1 -18 8024 7781 1548 174 11 14 chr3 10646798 10647074 -207390084 + AluJo SINE Alu 13 287 -25 1244 158 4 79 chr3 10647975 10648240 -207388918 - AluJo SINE Alu -8 304 60 368 320 56 32 chr3 10648282 10648532 -207388626 - L2 LINE L2 -104 3209 2954 468 0 0 0 chr3 10649833 10649885 -207387273 + (TA)n Simple_repeat Simple_repeat 1 52 0 531 259 99 28 chr3 10649909 10650233 -207386925 - L1MC4 LINE L1 -163 7879 7533 313 276 69 83 chr3 10650331 10650548 -207386610 - L1ME4a LINE L1 -246 5875 5662 220 330 140 10 chr3 10650911 10651011 -207386147 + L2 LINE L2 3150 3262 -10 1267 252 119 50 chr3 10651414 10652038 -207385120 - PABL_B LTR ERV1 0 667 1 2187 253 88 10 chr3 10652314 10652920 -207384238 - MER82 DNA MER2_type 0 653 1 2337 91 0 0 chr3 10652927 10653089 -207384069 - AluSc SINE Alu -13 296 132 2274 119 0 0 chr3 10653089 10653392 -207383766 - AluSg SINE Alu -7 303 1 2337 91 0 0 chr3 10653392 10653525 -207383633 - AluSc SINE Alu -176 133 1 228 35 0 0 chr3 10653525 10653554 -207383604 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 514 291 0 8 chr3 10653561 10653688 -207383470 + L2 LINE L2 3180 3305 -8 228 258 30 98 chr3 10653691 10653823 -207383335 + L2 LINE L2 3149 3271 -1 2733 173 61 34 chr3 10654630 10655271 -207381887 + LTR8A LTR ERV1 1 658 -69 1006 50 0 0 chr3 10655271 10655391 -207381767 - AluY SINE Alu -18 293 174 329 175 0 0 chr3 10655392 10655449 -207381709 + LTR8A LTR ERV1 652 708 -19 2634 102 56 0 chr3 10655976 10656389 -207380769 - MER41A LTR ERV1 -18 536 101 1647 154 145 10 chr3 10656411 10656808 -207380350 - MER61C LTR ERV1 0 434 1 726 96 0 0 chr3 10656808 10656912 -207380246 - MER41B LTR ERV1 -531 104 1 314 325 0 0 chr3 10658739 10658816 -207378342 + L2 LINE L2 3237 3313 0 543 258 94 21 chr3 10659078 10659448 -207377710 - L1ME4a LINE L1 -473 5648 5293 2356 98 0 3 chr3 10661063 10661368 -207375790 - AluSq SINE Alu -9 304 1 231 211 35 0 chr3 10661417 10661474 -207375684 - MIR SINE MIR -114 94 36 239 217 17 17 chr3 10661559 10661619 -207375539 + MIR SINE MIR 111 170 -92 256 278 124 10 chr3 10662816 10662913 -207374245 + L2 LINE L2 3206 3313 0 22 35 0 0 chr3 10664120 10664149 -207373009 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 10664465 10664486 -207372672 + AT_rich Low_complexity Low_complexity 1 21 0 508 286 59 20 chr3 10665646 10665849 -207371309 + MIR SINE MIR 51 261 -1 779 313 94 23 chr3 10666439 10666823 -207370335 + L2 LINE L2 2863 3273 -40 1808 240 93 39 chr3 10666825 10667513 -207369645 - MER50 LTR ERV1 0 734 10 238 333 70 26 chr3 10667896 10668052 -207369106 + MIR3 SINE MIR 16 178 -30 * 437 343 152 49 chr3 10668028 10668923 -207368235 - L3 LINE CR1 -400 1177 191 352 295 195 0 chr3 10669374 10669521 -207367637 - MER5A DNA MER1_type -1 188 13 646 281 30 0 chr3 10669521 10669688 -207367470 - MER5B DNA MER1_type -3 175 4 810 207 39 22 chr3 10669700 10669879 -207367279 - MER5A DNA MER1_type -1 188 7 381 279 25 16 chr3 10670498 10670620 -207366538 - L2 LINE L2 -4 3309 3187 485 273 107 34 chr3 10671293 10671498 -207365660 - MIR SINE MIR -31 231 12 2049 145 35 30 chr3 10671938 10672311 -207364847 + THE1C LTR MaLR 1 375 0 305 197 14 0 chr3 10672406 10672477 -207364681 + (TG)n Simple_repeat Simple_repeat 2 73 0 1041 224 121 35 chr3 10672482 10672822 -207364336 + MLT1A2 LTR MaLR 4 372 -2 849 295 78 12 chr3 10672908 10673117 -207364041 + L1ME LINE L1 5280 5474 -688 1688 175 20 20 chr3 10673117 10673414 -207363744 + AluSx SINE Alu 1 297 -15 849 295 78 12 chr3 10673414 10673703 -207363455 + L1ME LINE L1 5474 5811 -351 308 310 17 43 chr3 10674214 10674368 -207362790 - MIR SINE MIR -48 160 7 4197 120 23 2 chr3 10674677 10675320 -207361838 + L1PA13 LINE L1 5504 6160 -3 346 288 27 9 chr3 10675445 10675556 -207361602 - MER81 DNA DNA -1 113 1 325 149 15 0 chr3 10675590 10675657 -207361501 + MADE1 DNA Mariner 1 68 -12 249 108 0 0 chr3 10675707 10675744 -207361414 - MADE1 DNA Mariner -43 37 1 1845 192 6 6 chr3 10676576 10676930 -207360228 + MLT1A1 LTR MaLR 12 365 0 550 212 73 15 chr3 10676930 10677067 -207360091 - MER5A DNA MER1_type -39 150 6 411 298 87 36 chr3 10677719 10677971 -207359187 - MLT1J LTR MaLR 0 511 247 338 290 42 23 chr3 10679440 10679702 -207357456 + L1MEc LINE L1 2128 2394 -4002 704 190 40 17 chr3 10679703 10679877 -207357281 + MLT1D LTR MaLR 1 178 -327 341 143 0 0 chr3 10679878 10679934 -207357224 - THE1B LTR MaLR -1 363 308 1575 169 115 36 chr3 10679975 10680394 -207356764 + LTR10A LTR ERV1 97 548 -61 1511 138 44 60 chr3 10680406 10680724 -207356434 - THE1B LTR MaLR -51 313 1 855 232 107 12 chr3 10680741 10681060 -207356098 + MLT1D LTR MaLR 157 505 0 230 179 18 0 chr3 10681060 10681116 -207356042 + L1MEc LINE L1 2351 2407 -3808 182 219 24 0 chr3 10682484 10682525 -207354633 + L2 LINE L2 3270 3311 -2 186 229 33 49 chr3 10682609 10682670 -207354488 - MIR3 SINE MIR -1 207 148 466 341 11 37 chr3 10683709 10683982 -207353176 - L3 LINE CR1 -653 924 659 198 206 0 0 chr3 10684191 10684225 -207352933 + L2 LINE L2 3204 3237 -35 6747 102 30 34 chr3 10684376 10685452 -207351706 + MER11C LTR ERVK 1 1071 0 191 309 155 0 chr3 10686250 10686334 -207350824 - MIR SINE MIR -3 259 163 1350 255 60 11 chr3 10686362 10686797 -207350361 + MLT1C LTR MaLR 12 467 0 240 314 22 100 chr3 10686808 10687037 -207350121 + MIR SINE MIR 40 250 -12 229 280 168 19 chr3 10687066 10687173 -207349985 - MIR SINE MIR -108 154 32 187 293 40 27 chr3 10687995 10688070 -207349088 - MIR SINE MIR -111 97 22 207 0 0 0 chr3 10688643 10688666 -207348492 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 209 309 57 24 chr3 10689263 10689386 -207347772 + MIR SINE MIR 20 146 -116 1888 274 20 36 chr3 10689987 10690623 -207346535 + MLT1E2 LTR MaLR 1 626 0 2616 100 17 3 chr3 10690626 10690985 -207346173 + THE1B LTR MaLR 1 364 0 2431 110 0 0 chr3 10691556 10691865 -207345293 - AluSc SINE Alu 0 309 1 666 356 95 11 chr3 10691865 10692328 -207344830 + L2 LINE L2 1982 2483 -831 241 242 16 16 chr3 10692755 10692817 -207344341 + L3 LINE CR1 1515 1576 -1 766 297 90 30 chr3 10693328 10693729 -207343429 - LTR16C LTR ERVL 0 491 67 1914 174 35 30 chr3 10693741 10694289 -207342869 - MLT2A2 LTR ERVL 0 554 1 190 333 144 0 chr3 10695868 10695979 -207341179 - L2 LINE L2 -4 3268 3142 295 276 66 33 chr3 10696021 10696173 -207340985 - MIR SINE MIR -4 258 102 254 343 80 34 chr3 10696264 10696439 -207340719 - L2 LINE L2 -210 3062 2880 417 261 20 7 chr3 10697183 10697380 -207339778 - MLT1H1 LTR MaLR -13 542 300 354 252 0 34 chr3 10697420 10697539 -207339619 - L1MA9 LINE L1 -38 6274 6160 287 254 55 27 chr3 10697554 10697664 -207339494 + L1MA9 LINE L1 5933 6045 -267 388 261 92 7 chr3 10697764 10697906 -207339252 - MLT1H1 LTR MaLR -364 191 38 293 294 0 0 chr3 10698131 10698199 -207338959 - MER58 DNA MER1_type -2350 70 3 585 276 84 28 chr3 10699068 10699282 -207337876 + MIR SINE MIR 36 261 -1 481 272 126 50 chr3 10699414 10699653 -207337505 - MIR SINE MIR 0 262 6 260 67 0 67 chr3 10700096 10700156 -207337002 + (TA)n Simple_repeat Simple_repeat 1 56 0 1039 157 0 0 chr3 10700160 10700313 -207336845 - FRAM SINE Alu -24 152 1 417 303 0 0 chr3 10700465 10700564 -207336594 - L2 LINE L2 0 3272 3174 2359 84 10 0 chr3 10700695 10700992 -207336166 + AluSx SINE Alu 1 300 -12 468 311 39 22 chr3 10701202 10701382 -207335776 - MER5A DNA MER1_type -6 183 1 2358 95 0 3 chr3 10701668 10701964 -207335194 - AluSg SINE Alu -15 295 1 846 116 0 0 chr3 10702009 10702138 -207335020 + (TA)n Simple_repeat Simple_repeat 1 129 0 243 294 158 20 chr3 10702642 10702788 -207334370 + MIR SINE MIR 26 191 -71 2132 193 31 5 chr3 10702951 10703366 -207333792 + MSTB LTR MaLR 1 426 0 678 249 21 21 chr3 10703971 10704160 -207332998 + MER5A DNA MER1_type 1 189 0 243 240 19 67 chr3 10704525 10704629 -207332529 + LTR67 LTR ERVL 442 540 -17 3266 149 22 77 chr3 10704980 10705709 -207331449 - LTR8 LTR ERV1 -2 689 1 4925 50 6 0 chr3 10706021 10706684 -207330474 - L1PA4 LINE L1 -2238 3908 3242 12088 35 1 1 chr3 10706684 10708920 -207328238 + L1PA4 LINE L1 3916 6154 -1 1455 117 40 18 chr3 10709076 10709299 -207327859 - MER30 DNA MER1_type -1 229 2 885 271 23 0 chr3 10709432 10709650 -207327508 - MER58A DNA MER1_type -1 223 1 326 286 121 16 chr3 10710820 10711002 -207326156 + L2 LINE L2 2565 2765 -549 299 331 54 15 chr3 10711006 10711136 -207326022 + MER5B DNA MER1_type 1 135 -43 463 241 25 25 chr3 10711136 10711294 -207325864 - L1MD2 LINE L1 -173 6186 6029 191 361 0 14 chr3 10711346 10711418 -207325740 + MER5A DNA MER1_type 118 188 -1 289 208 57 0 chr3 10711592 10711645 -207325513 + L2 LINE L2 3202 3257 -15 192 97 0 0 chr3 10711681 10711712 -207325446 + (CA)n Simple_repeat Simple_repeat 2 32 0 185 371 29 9 chr3 10711754 10711859 -207325299 - MIR SINE MIR -154 108 2 790 222 5 31 chr3 10712616 10712810 -207324348 - MER5A DNA MER1_type 0 189 1 404 287 19 0 chr3 10713069 10713177 -207323981 + MER5B DNA MER1_type 3 112 -66 191 225 0 0 chr3 10713204 10713244 -207323914 + MIR SINE MIR 159 198 -64 286 253 40 0 chr3 10713263 10713338 -207323820 - MIR SINE MIR -8 254 177 2570 145 61 10 chr3 10713494 10714071 -207323087 - LTR12 LTR ERV1 -226 2212 55 343 219 73 21 chr3 10714081 10714177 -207322981 + MIR SINE MIR 88 188 -74 839 293 11 15 chr3 10714206 10714472 -207322686 + L1MCb LINE L1 1 265 -5780 397 212 126 27 chr3 10714476 10714515 -207322643 - L1 LINE L1 -2486 3660 3626 2169 118 0 17 chr3 10714515 10714812 -207322346 + AluSx SINE Alu 1 292 -20 397 212 126 27 chr3 10714812 10714937 -207322221 - L1 LINE L1 -2520 3626 3495 492 312 95 9 chr3 10714982 10715213 -207321945 + L1MCb LINE L1 312 562 -5483 1279 246 82 29 chr3 10715287 10715799 -207321359 + L1MCb LINE L1 554 1092 -4953 1119 195 36 115 chr3 10715806 10716196 -207320962 + MLT1A1 LTR MaLR 7 365 0 304 216 23 0 chr3 10716196 10716284 -207320874 + L1MCb LINE L1 1090 1179 -5385 1217 142 176 31 chr3 10716284 10716545 -207320613 + AluSg SINE Alu 2 300 0 1557 190 70 24 chr3 10716809 10717182 -207319976 + MLT1B LTR MaLR 1 390 0 1820 150 13 29 chr3 10717517 10717823 -207319335 + AluSx SINE Alu 6 306 -6 2472 257 51 7 chr3 10717881 10719102 -207318056 - L1M4 LINE L1 -1537 4609 3280 2855 174 19 4 chr3 10719437 10719972 -207317186 + MER74A LTR ERVL 16 558 0 647 202 0 0 chr3 10720174 10720283 -207316875 + FLAM_A SINE Alu 15 123 -19 366 23 0 0 chr3 10720499 10720542 -207316616 + (TG)n Simple_repeat Simple_repeat 2 44 0 248 289 116 26 chr3 10721286 10721476 -207315682 + L1MC/D LINE L1 5569 5775 -2033 1453 118 32 0 chr3 10721503 10721723 -207315435 + MER30 DNA MER1_type 2 228 -2 218 82 0 61 chr3 10723133 10723182 -207313976 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 231 314 42 25 chr3 10723347 10723465 -207313693 - L2 LINE L2 -1 3312 3193 193 281 104 30 chr3 10724298 10724433 -207312725 - MIR SINE MIR -43 219 75 795 266 78 33 chr3 10724739 10725230 -207311928 + L2 LINE L2 2794 3313 0 284 163 0 0 chr3 10725406 10725455 -207311703 + MER39 LTR ERV1 1 49 -658 2388 186 48 18 chr3 10725541 10726112 -207311046 + MER39 LTR ERV1 69 707 0 378 315 0 0 chr3 10726401 10726509 -207310649 - MIR SINE MIR -41 221 114 1479 192 20 30 chr3 10726804 10727210 -207309948 + LTR37A LTR ERV1 23 424 -2 313 0 21310 0 chr3 10728041 10728154 -207309004 + L1MC4a LINE L1 7425 5125 -2683 412 291 17 62 chr3 10728154 10728205 -207308953 - MER5B DNA MER1_type -4 174 122 1871 107 4 4 chr3 10728205 10728554 -207308604 + AluSx SINE Alu 30 378 0 412 291 17 62 chr3 10728554 10728678 -207308480 - MER5B DNA MER1_type -56 122 4 313 0 21310 0 chr3 10728678 10728692 -207308466 + L1MC4a LINE L1 5125 4858 -2950 978 169 38 6 chr3 10728692 10728875 -207308283 - MER5A DNA MER1_type 0 189 1 313 0 21310 0 chr3 10728875 10729096 -207308062 + L1MC4a LINE L1 4857 7699 -109 180 260 104 52 chr3 10729797 10729874 -207307284 + L2 LINE L2 2624 2704 -610 856 221 44 58 chr3 10729875 10730101 -207307057 + MER58A DNA MER1_type 1 223 -1 433 264 0 0 chr3 10730122 10730213 -207306945 + MER5A DNA MER1_type 12 102 -87 1612 183 131 3 chr3 10730699 10731082 -207306076 + MSTB1 LTR MaLR 1 432 0 1071 198 102 23 chr3 10731466 10731810 -207305348 - LTR37A LTR ERV1 0 426 56 627 228 21 32 chr3 10733039 10733278 -207303880 - MER39 LTR ERV1 -3 680 422 443 311 24 67 chr3 10733404 10733613 -207303545 - MIR SINE MIR -14 248 49 196 306 32 0 chr3 10734356 10734418 -207302740 - L2 LINE L2 0 3272 3209 265 286 0 14 chr3 10734421 10734491 -207302667 - L2 LINE L2 -4 3309 3241 591 260 86 83 chr3 10734606 10735203 -207301955 + MER77 LTR ERV1 87 601 -4 356 275 118 22 chr3 10735232 10735461 -207301697 - L2 LINE L2 -68 3245 2995 587 236 188 0 chr3 10735800 10735944 -207301214 - MER5A DNA MER1_type 0 189 19 815 215 83 31 chr3 10736004 10736292 -207300866 - MER33 DNA MER1_type -21 303 1 182 208 21 0 chr3 10736483 10736531 -207300627 + (TA)n Simple_repeat Simple_repeat 2 50 0 450 0 0 0 chr3 10736535 10736585 -207300573 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 36 0 0 chr3 10737105 10737133 -207300025 + AT_rich Low_complexity Low_complexity 1 28 0 412 280 136 19 chr3 10737464 10737678 -207299480 - MIR SINE MIR -15 247 9 294 378 82 30 chr3 10737687 10737954 -207299204 - L3 LINE CR1 -163 1414 1134 1640 257 61 18 chr3 10738269 10738760 -207298398 + MLT1H LTR MaLR 15 526 -23 595 274 30 25 chr3 10739704 10739901 -207297257 + MIR SINE MIR 4 201 -61 246 250 159 11 chr3 10740164 10740252 -207296906 + MIR SINE MIR 39 139 -69 267 105 26 0 chr3 10740474 10740512 -207296646 + L2 LINE L2 3215 3253 -19 397 325 86 0 chr3 10740850 10741013 -207296145 - MIR SINE MIR -62 200 24 339 335 112 6 chr3 10741504 10741674 -207295484 - MIR SINE MIR -12 250 63 1224 121 185 0 chr3 10741676 10741925 -207295233 + L1MA5A LINE L1 5993 6287 -10 270 206 79 0 chr3 10742084 10742147 -207295011 + MER103 DNA DNA 18 85 -81 317 317 65 4 chr3 10742644 10742874 -207294284 + L1ME3A LINE L1 5628 5871 -299 23 54 0 0 chr3 10743003 10743040 -207294118 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 10743222 10743246 -207293912 + AT_rich Low_complexity Low_complexity 1 24 0 1481 174 81 3 chr3 10743422 10743732 -207293426 - MLT1A1 LTR MaLR 0 365 32 24 32 0 0 chr3 10743809 10743840 -207293318 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr3 10744986 10745024 -207292134 + AT_rich Low_complexity Low_complexity 1 38 0 249 221 13 0 chr3 10745175 10745252 -207291906 + L1MDb LINE L1 1271 1348 -5195 364 298 14 106 chr3 10745457 10745749 -207291409 + L1MDb LINE L1 1656 1920 -4620 9567 205 89 25 chr3 10745756 10748845 -207288313 + L1MA4A LINE L1 8 2899 -4046 1768 178 0 24 chr3 10748845 10749174 -207287984 - AluJb SINE Alu 0 322 1 9567 205 89 25 chr3 10749174 10749197 -207287961 + L1MA4A LINE L1 2899 2919 -4026 1781 144 0 50 chr3 10749197 10749496 -207287662 - AluSg SINE Alu -26 284 1 9567 205 89 25 chr3 10749496 10752920 -207284238 + L1MA4A LINE L1 2919 6945 0 807 219 0 12 chr3 10753284 10753444 -207283714 - FRAM SINE Alu -18 158 1 1717 249 93 53 chr3 10753859 10754896 -207282262 + L1MC4 LINE L1 6965 8042 0 1080 275 144 21 chr3 10755177 10756479 -207280679 + L1ME3A LINE L1 4465 5936 -234 2051 120 3 20 chr3 10756698 10756998 -207280160 + AluSx SINE Alu 1 295 -17 320 304 9 9 chr3 10757069 10757181 -207279977 - MLT1I LTR MaLR -6 403 292 323 202 12 24 chr3 10757220 10757304 -207279854 - MLT1I LTR MaLR -226 183 101 279 296 0 96 chr3 10757471 10757586 -207279572 + L2 LINE L2 2919 3022 -250 540 306 35 39 chr3 10758962 10759009 -207278149 - MIR SINE MIR -1 261 215 2217 172 16 21 chr3 10759009 10759439 -207277719 + MSTA LTR MaLR 1 428 0 540 306 35 39 chr3 10759439 10759649 -207277509 - MIR SINE MIR -47 215 5 185 266 127 13 chr3 10760336 10760415 -207276743 - MIR SINE MIR -29 233 146 189 404 0 0 chr3 10760432 10760541 -207276617 - L3 LINE CR1 -731 846 738 341 308 151 6 chr3 10761506 10761678 -207275480 - MIR SINE MIR -10 252 56 186 262 0 0 chr3 10761705 10761747 -207275411 + MER5B DNA MER1_type 12 53 -125 29 28 0 0 chr3 10761881 10761917 -207275241 + AT_rich Low_complexity Low_complexity 1 36 0 266 310 99 34 chr3 10762133 10762271 -207274887 + L1M4 LINE L1 3352 3480 -2666 180 0 0 0 chr3 10762271 10762291 -207274867 + (CA)n Simple_repeat Simple_repeat 2 21 0 266 310 99 34 chr3 10762291 10762544 -207274614 + L1M4 LINE L1 3480 3715 -2431 2189 105 14 3 chr3 10762544 10762839 -207274319 + AluSg SINE Alu 1 298 -12 266 310 99 34 chr3 10762839 10763013 -207274145 + L1M4 LINE L1 3715 3955 -2191 259 130 56 0 chr3 10763211 10763265 -207273893 + FRAM SINE Alu 44 100 -66 562 209 86 49 chr3 10763377 10763586 -207273572 + MLT1C LTR MaLR 8 234 -233 824 136 0 0 chr3 10763636 10763746 -207273412 - FLAM_C SINE Alu -25 118 9 254 290 133 33 chr3 10763996 10764417 -207272741 + L1M4 LINE L1 4382 4844 -1302 269 115 0 19 chr3 10764423 10764475 -207272683 + MER5C DNA MER1_type 74 124 -200 226 200 0 86 chr3 10764499 10764569 -207272589 + MER5C DNA MER1_type 240 303 -21 344 273 35 87 chr3 10764962 10765134 -207272024 - MIR3 SINE MIR -6 202 40 2200 101 7 3 chr3 10765603 10765900 -207271258 - AluSx SINE Alu -14 298 1 254 316 23 18 chr3 10765932 10766103 -207271055 - L1ME LINE L1 -220 5901 5730 2221 125 0 13 chr3 10766355 10766666 -207270492 + AluSx SINE Alu 1 307 -5 243 308 64 39 chr3 10767125 10767281 -207269877 + MER5A DNA MER1_type 27 186 -3 444 258 174 13 chr3 10767352 10767507 -207269651 - MER5A DNA MER1_type -1 188 9 309 344 51 62 chr3 10767622 10767817 -207269341 + MIR3 SINE MIR 16 208 0 851 261 111 2 chr3 10768543 10768949 -207268209 + MER113 DNA MER1_type? 9 458 -63 2245 138 0 0 chr3 10769315 10769627 -207267531 + AluSx SINE Alu 1 312 0 368 354 46 11 chr3 10770584 10770759 -207266399 + MIR SINE MIR 21 201 -61 231 277 71 0 chr3 10771479 10771620 -207265538 - L1ME4a LINE L1 -4 6117 5967 23 0 0 0 chr3 10771666 10771689 -207265469 + AT_rich Low_complexity Low_complexity 1 23 0 440 311 60 48 chr3 10772777 10773028 -207264130 + MIR SINE MIR 8 261 -1 193 162 88 88 chr3 10773022 10773090 -207264068 - MIR SINE MIR -111 151 84 * 366 299 68 7 chr3 10773326 10773473 -207263685 - L3 LINE CR1 -794 783 628 22 56 0 0 chr3 10774374 10774410 -207262748 + AT_rich Low_complexity Low_complexity 1 36 0 1217 57 13 0 chr3 10774489 10774647 -207262511 - L1PA4 LINE L1 -1 6154 5995 34 53 0 0 chr3 10774659 10774697 -207262461 + GC_rich Low_complexity Low_complexity 1 38 0 374 300 29 43 chr3 10775246 10775386 -207261772 + L2 LINE L2 2621 2758 -556 197 162 0 27 chr3 10775766 10775803 -207261355 + L2 LINE L2 3183 3218 -95 203 321 75 38 chr3 10775997 10776103 -207261055 - MIR3 SINE MIR -92 116 7 2399 65 0 19 chr3 10776320 10776630 -207260528 + AluSc SINE Alu 1 304 -5 246 312 26 26 chr3 10776670 10776747 -207260411 + MER5A DNA MER1_type 4 80 -109 324 274 32 95 chr3 10777248 10777438 -207259720 + MER5B DNA MER1_type 1 178 0 940 242 43 10 chr3 10778886 10779194 -207257964 + L1ME2 LINE L1 5818 6134 -30 191 374 0 30 chr3 10780946 10781045 -207256113 - L2 LINE L2 -49 3264 3169 874 211 0 63 chr3 10781045 10781268 -207255890 - MER20 DNA MER1_type -1 218 10 398 331 150 30 chr3 10781349 10781761 -207255397 - L2 LINE L2 -200 3113 2647 808 239 109 13 chr3 10782662 10782900 -207254258 - MIR SINE MIR 0 262 2 207 0 0 0 chr3 10783925 10783948 -207253210 + (A)n Simple_repeat Simple_repeat 1 23 0 2298 91 0 28 chr3 10783949 10784269 -207252889 + AluY SINE Alu 1 311 0 231 265 41 20 chr3 10785173 10785271 -207251887 + L1MC4 LINE L1 7926 8025 -17 371 253 133 19 chr3 10785407 10785565 -207251593 - MIR SINE MIR 0 262 87 570 263 21 16 chr3 10785623 10785817 -207251341 - L1ME3A LINE L1 -34 6136 5942 681 237 25 30 chr3 10786501 10786737 -207250421 + MER106A DNA MER1_type 1 235 -1 207 361 84 40 chr3 10788961 10789210 -207247948 + L2 LINE L2 2645 2904 -410 213 283 17 0 chr3 10789296 10789356 -207247802 - MIR SINE MIR 0 262 202 797 246 60 30 chr3 10789521 10789855 -207247303 - L1ME1 LINE L1 -5 6161 5818 2080 125 0 3 chr3 10789859 10790146 -207247012 - AluSc SINE Alu -23 286 1 228 35 0 0 chr3 10790146 10790175 -207246983 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 514 291 0 8 chr3 10790182 10790309 -207246849 + L2 LINE L2 3180 3305 -8 228 258 30 98 chr3 10790312 10790444 -207246714 + L2 LINE L2 3149 3271 -1 2718 176 59 34 chr3 10791251 10791893 -207245265 + LTR8A LTR ERV1 1 658 -69 2181 56 42 11 chr3 10791893 10792177 -207244981 - AluYa5 SINE Alu -18 293 1 443 284 40 27 chr3 10792353 10792501 -207244657 - MIR SINE MIR -3 259 110 2243 126 0 0 chr3 10793471 10793772 -207243386 - AluSq SINE Alu -10 303 3 906 137 167 18 chr3 10793779 10794006 -207243152 - L1MA8 LINE L1 0 6291 6031 211 222 146 94 chr3 10795034 10795205 -207241953 + MIR SINE MIR 73 252 -10 480 304 19 19 chr3 10796318 10796479 -207240679 + MER5B DNA MER1_type 1 161 -17 1351 202 79 20 chr3 10796618 10796974 -207240184 - MLT1B LTR MaLR -11 379 3 392 240 232 0 chr3 10798118 10798243 -207238915 + MIR SINE MIR 107 260 -2 204 243 27 95 chr3 10798825 10798899 -207238259 - MER5A DNA MER1_type -103 86 18 783 275 25 21 chr3 10799535 10799775 -207237383 + MIR SINE MIR 16 256 -6 793 220 59 0 chr3 10799817 10800003 -207237155 - MER3 DNA MER1_type -12 197 1 279 240 175 39 chr3 10801261 10801395 -207235763 - MIR SINE MIR -62 146 36 881 276 35 0 chr3 10802253 10802485 -207234673 - MIR SINE MIR -16 246 7 486 220 9 0 chr3 10802551 10802660 -207234498 - MER20 DNA MER1_type 0 219 110 219 340 60 50 chr3 10803303 10803403 -207233755 - L2 LINE L2 -184 3088 2988 1687 176 7 26 chr3 10803601 10803907 -207233251 + AluJo SINE Alu 1 300 -12 796 227 77 0 chr3 10804390 10804584 -207232574 - MER3 DNA MER1_type 0 209 1 2485 48 0 58 chr3 10804753 10805083 -207232075 - AluY SINE Alu 0 311 1 361 335 18 41 chr3 10805903 10806124 -207231034 + MIR SINE MIR 19 234 -28 1085 153 0 0 chr3 10806407 10806577 -207230581 - AluSg/x SINE Alu -7 305 136 505 237 15 0 chr3 10807850 10807981 -207229177 + MER94 DNA DNA 2 134 0 295 273 105 35 chr3 10808133 10808276 -207228882 + MIR SINE MIR 29 181 -81 253 297 73 70 chr3 10808624 10808897 -207228261 + L2 LINE L2 2907 3180 -133 224 292 67 58 chr3 10809472 10809592 -207227566 - MIR SINE MIR -51 211 91 303 297 11 11 chr3 10810258 10810349 -207226809 + MIR SINE MIR 2 92 -170 227 170 57 0 chr3 10811154 10811207 -207225951 - MLT1D LTR MaLR -401 104 49 324 293 153 19 chr3 10811613 10811770 -207225388 + MIR SINE MIR 58 235 -27 2163 120 3 22 chr3 10811902 10812218 -207224940 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr3 10812242 10812272 -207224886 + (CA)n Simple_repeat Simple_repeat 1 30 0 307 288 72 85 chr3 10812861 10813097 -207224061 + L1MC4a LINE L1 5815 6047 -1761 1228 227 91 50 chr3 10813540 10813959 -207223199 + MER63B DNA MER1_type 1 436 0 194 338 93 0 chr3 10814065 10814204 -207222954 - MIR SINE MIR 0 262 111 2055 206 26 14 chr3 10814516 10814943 -207222215 - MSTB1 LTR MaLR 0 432 1 592 256 6 36 chr3 10815321 10815489 -207221669 - MER5B DNA MER1_type -10 168 6 2207 76 0 13 chr3 10815522 10815823 -207221335 + AluY SINE Alu 9 305 -6 28 29 0 0 chr3 10816000 10816035 -207221123 + AT_rich Low_complexity Low_complexity 1 35 0 1141 68 7 0 chr3 10816323 10816471 -207220687 + L1PA7 LINE L1 5999 6147 -7 185 324 28 39 chr3 10817073 10817189 -207219969 + MIR SINE MIR 7 89 -119 896 250 43 20 chr3 10817548 10817848 -207219310 + LTR16A LTR ERVL 95 401 -49 467 284 130 17 chr3 10818166 10818575 -207218583 - L1MC4 LINE L1 0 8042 7588 424 203 122 14 chr3 10818577 10818621 -207218537 - L1MA10 LINE L1 -2 6332 6289 2570 237 66 22 chr3 10818621 10819168 -207217990 - L1ME1 LINE L1 -44 6122 5601 2495 65 0 0 chr3 10819168 10819475 -207217683 - AluY SINE Alu -4 307 1 2570 237 66 22 chr3 10819475 10820547 -207216611 - L1ME1 LINE L1 -565 5601 4428 538 326 19 25 chr3 10820540 10820862 -207216296 - L1MC4 LINE L1 -452 7590 7271 * 186 231 0 0 chr3 10821467 10821506 -207215652 - L2 LINE L2 -17 3296 3258 1070 141 9 61 chr3 10825520 10825733 -207211425 - MLT2A2 LTR ERVL -251 202 1 216 289 144 10 chr3 10825733 10825837 -207211321 + MIR SINE MIR 90 207 -55 438 243 21 36 chr3 10827070 10827210 -207209948 - L2 LINE L2 -1 3312 3175 292 319 44 0 chr3 10828859 10828972 -207208186 + MIR SINE MIR 49 166 -96 23 0 0 0 chr3 10829115 10829138 -207208020 + AT_rich Low_complexity Low_complexity 1 23 0 59 88 0 0 chr3 10829680 10829782 -207207376 + AT_rich Low_complexity Low_complexity 1 102 0 2561 43 0 0 chr3 10829782 10830104 -207207054 - L1PA4 LINE L1 -134 6021 5700 719 34 0 0 chr3 10830104 10830192 -207206966 + L1PA4 LINE L1 5618 5705 -449 380 285 70 55 chr3 10831185 10831385 -207205773 - MER63A DNA MER1_type -3 207 5 252 0 0 0 chr3 10831560 10831588 -207205570 + (CAT)n Simple_repeat Simple_repeat 2 29 0 296 289 125 13 chr3 10831815 10831967 -207205191 + MIR SINE MIR 72 240 -22 241 291 9 55 chr3 10832170 10832280 -207204878 - L2 LINE L2 -873 2441 2337 684 216 30 82 chr3 10832673 10832904 -207204254 - MER58A DNA MER1_type 0 224 6 217 319 80 26 chr3 10832926 10833039 -207204119 + L2 LINE L2 3189 3307 -6 297 172 0 0 chr3 10834545 10834609 -207202549 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 248 315 0 9 chr3 10834804 10834912 -207202246 - MER103 DNA DNA -48 118 12 314 209 0 30 chr3 10835929 10835996 -207201162 + L3 LINE CR1 1227 1291 -286 347 263 74 0 chr3 10836792 10836887 -207200271 + L2 LINE L2 3195 3296 -17 236 186 17 0 chr3 10836969 10837028 -207200130 + (TA)n Simple_repeat Simple_repeat 1 60 0 3467 78 13 0 chr3 10837534 10837981 -207199177 + MLT2A2 LTR ERVL 1 453 0 527 189 184 31 chr3 10837993 10838108 -207199050 + L1MA9 LINE L1 6019 6115 -197 2229 105 36 33 chr3 10838108 10838471 -207198687 - THE1B LTR MaLR 0 364 1 527 189 184 31 chr3 10838471 10838583 -207198575 + L1MA9 LINE L1 6115 6281 -31 4319 63 2 4 chr3 10838785 10839342 -207197816 + L1PA8A LINE L1 5563 6118 -13 432 234 98 103 chr3 10840690 10841096 -207196062 - LTR33A LTR ERVL 0 523 120 2049 139 0 26 chr3 10841865 10842167 -207194991 - AluSx SINE Alu -18 294 1 231 246 78 70 chr3 10842626 10842668 -207194490 + MIR SINE MIR 118 158 -104 1995 178 78 10 chr3 10842668 10843067 -207194091 + MSTB LTR MaLR 1 426 0 231 246 78 70 chr3 10843067 10843166 -207193992 + MIR SINE MIR 158 260 -2 189 371 73 8 chr3 10843555 10843679 -207193479 + MIR SINE MIR 118 249 -13 2289 102 0 41 chr3 10843714 10844029 -207193129 + AluSq SINE Alu 1 302 -11 203 171 0 0 chr3 10844513 10844554 -207192604 + (TA)n Simple_repeat Simple_repeat 1 41 0 232 203 109 70 chr3 10844618 10844746 -207192412 + MER113 DNA MER1_type? 3 135 -386 32 57 0 0 chr3 10844746 10844799 -207192359 + AT_rich Low_complexity Low_complexity 1 53 0 279 333 85 23 chr3 10845100 10845229 -207191929 + MIR3 SINE MIR 10 146 -62 30 0 0 0 chr3 10846023 10846053 -207191105 + AT_rich Low_complexity Low_complexity 1 30 0 2114 108 3 0 chr3 10846373 10846660 -207190498 - AluSq SINE Alu -25 288 1 346 202 36 0 chr3 10846983 10847067 -207190091 - MLT1I LTR MaLR -4 405 319 319 309 52 58 chr3 10847350 10847641 -207189517 + MLT1K LTR MaLR 138 426 -162 184 348 65 39 chr3 10847928 10848083 -207189075 + L2 LINE L2 2820 2978 -294 275 288 45 9 chr3 10848984 10849095 -207188063 + LTR67 LTR ERVL 409 523 -34 368 302 0 35 chr3 10850453 10850569 -207186589 + L2 LINE L2 3202 3313 0 1366 183 51 36 chr3 10850604 10850960 -207186198 + MLT1B LTR MaLR 30 390 0 271 296 84 0 chr3 10850962 10851104 -207186054 + L2 LINE L2 2749 2902 -412 220 318 83 30 chr3 10851212 10851344 -207185814 + L2 LINE L2 3134 3272 0 582 311 57 38 chr3 10851436 10851569 -207185589 + L1ME3A LINE L1 5465 5594 -576 879 210 23 27 chr3 10851569 10851788 -207185370 + MER20 DNA MER1_type 2 219 0 582 311 57 38 chr3 10851788 10852075 -207185083 + L1ME3A LINE L1 5594 5893 -277 1595 236 141 19 chr3 10853066 10853654 -207183504 + L1MC4 LINE L1 6485 7144 -898 341 206 0 0 chr3 10853654 10853727 -207183431 + L1MC4a LINE L1 7137 7209 -599 1478 211 17 34 chr3 10853731 10853971 -207183187 - MER2 DNA MER2_type 0 345 111 1147 122 117 0 chr3 10853971 10854176 -207182982 + MER30 DNA MER1_type 1 229 -1 1478 211 17 34 chr3 10854176 10854286 -207182872 - MER2 DNA MER2_type -234 111 1 1477 223 132 29 chr3 10854286 10854833 -207182325 + L1MC4 LINE L1 7295 7897 -145 1687 167 60 33 chr3 10855056 10855421 -207181737 - THE1C LTR MaLR 0 375 1 1817 183 6 10 chr3 10855878 10856190 -207180968 + AluSx SINE Alu 1 311 -1 487 336 82 66 chr3 10856219 10856659 -207180499 + L1M2 LINE L1 1 447 -6402 209 83 28 0 chr3 10857317 10857353 -207179805 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 12090 217 36 12 chr3 10857402 10861271 -207175887 + L1PA15 LINE L1 1532 5515 -1282 4428 128 30 3 chr3 10861272 10861998 -207175160 + L1PA15 LINE L1 6064 6809 -7 23 0 0 0 chr3 10862093 10862116 -207175042 + AT_rich Low_complexity Low_complexity 1 23 0 929 199 10 0 chr3 10862218 10862419 -207174739 + L1PB1 LINE L1 2 204 -6659 * 11724 184 88 13 chr3 10862392 10866535 -207170623 + L1PB1 LINE L1 601 5337 -1530 2298 122 0 0 chr3 10866535 10866847 -207170311 + AluSx SINE Alu 1 312 0 11724 184 88 13 chr3 10866847 10868501 -207168657 + L1PB1 LINE L1 5337 6865 -2 186 125 0 0 chr3 10868803 10868814 -207168344 + (TAA)n Simple_repeat Simple_repeat 1 11 -21 2123 78 7 3 chr3 10868814 10869097 -207168061 + AluY SINE Alu 1 284 -27 186 125 0 0 chr3 10869097 10869117 -207168041 + (TAA)n Simple_repeat Simple_repeat 10 32 0 260 310 89 6 chr3 10869156 10869314 -207167844 - MIR SINE MIR -50 212 42 26 64 0 0 chr3 10869314 10869361 -207167797 + AT_rich Low_complexity Low_complexity 1 47 0 239 346 144 19 chr3 10870102 10870206 -207166952 + L2 LINE L2 3175 3291 -22 279 351 0 0 chr3 10871119 10871196 -207165962 - L2 LINE L2 -2 3311 3235 22637 72 15 1 chr3 10871212 10875015 -207162143 - L1PA6 LINE L1 -1 6153 2305 181 57 57 0 chr3 10875015 10875050 -207162108 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 22637 72 15 1 chr3 10875050 10875116 -207162042 - L1PA6 LINE L1 -3849 2305 2241 509 316 60 23 chr3 10875139 10875354 -207161804 + MIR SINE MIR 33 255 -7 1449 312 30 11 chr3 10875532 10876089 -207161069 + L1M1 LINE L1 19 586 -6623 298 155 121 0 chr3 10876092 10876150 -207161008 + Charlie3 DNA MER1_type 6 70 -2640 * 1335 162 57 142 chr3 10876136 10876488 -207160670 + Charlie3 DNA MER1_type 17 2711 0 322 248 77 43 chr3 10876557 10876674 -207160484 + L1M1 LINE L1 677 797 -6412 3074 234 70 2 chr3 10876826 10877654 -207159504 + L1M1 LINE L1 1439 2322 -4887 4922 204 26 11 chr3 10877660 10878902 -207158256 + L1M1 LINE L1 5106 6366 -842 1653 144 81 17 chr3 10878918 10879264 -207157894 + L1M1 LINE L1 6448 6815 -550 1210 56 12 0 chr3 10879289 10879450 -207157708 - L1P3 LINE L1 -459 5713 5551 * 27532 119 16 72 chr3 10879447 10881581 -207155577 - L1P3 LINE L1 -1007 5139 2887 2117 120 0 3 chr3 10881581 10881872 -207155286 + AluY SINE Alu 5 294 -17 27532 119 16 72 chr3 10881872 10885168 -207151990 - L1P3 LINE L1 -3259 2887 12 255 252 52 17 chr3 10885299 10885414 -207151744 + L1MC4 LINE L1 7924 8042 0 375 316 64 23 chr3 10886675 10886893 -207150265 - MIR SINE MIR -34 228 2 180 0 0 0 chr3 10887972 10887992 -207149166 + (A)n Simple_repeat Simple_repeat 1 20 0 336 274 113 8 chr3 10888037 10888161 -207148997 - MIR3 SINE MIR -50 158 22 203 179 0 0 chr3 10888490 10888529 -207148629 + A-rich Low_complexity Low_complexity 4 42 0 460 183 208 0 chr3 10889073 10889193 -207147965 - MIR SINE MIR -90 172 28 369 285 73 36 chr3 10889751 10889916 -207147242 - MIR SINE MIR -71 191 21 2208 204 33 70 chr3 10890239 10890871 -207146287 + LTR9 LTR ERV1 1 609 -3 606 242 35 37 chr3 10891155 10891349 -207145809 + MIR SINE MIR 59 254 -8 1786 254 33 80 chr3 10891708 10892471 -207144687 + MER21B LTR ERV1 13 739 -124 222 372 68 7 chr3 10892859 10893007 -207144151 + MIR3 SINE MIR 25 181 -27 * 331 328 69 17 chr3 10892988 10893162 -207143996 + MER5A DNA MER1_type 7 189 0 3548 141 77 10 chr3 10893305 10894013 -207143145 + LTR1B LTR ERV1 1 785 0 407 262 299 0 chr3 10895067 10895311 -207141847 + MER5C DNA MER1_type 2 318 -6 1434 208 45 20 chr3 10897381 10897780 -207139378 + LTR37B LTR ERV1 60 468 0 218 56 28 0 chr3 10897952 10897988 -207139170 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 230 290 221 0 chr3 10898026 10898157 -207139001 + MIR3 SINE MIR 33 192 -16 21 0 0 0 chr3 10898617 10898638 -207138520 + AT_rich Low_complexity Low_complexity 1 21 0 593 263 41 12 chr3 10899943 10900114 -207137044 - MIR SINE MIR -3 259 84 231 312 0 0 chr3 10900402 10900479 -207136679 - MLT1I LTR MaLR -254 155 79 2284 110 3 3 chr3 10900709 10901010 -207136148 - AluSc SINE Alu -8 301 1 288 188 27 98 chr3 10901201 10901313 -207135845 - Charlie8 DNA MER1_type -2237 180 77 2099 116 0 14 chr3 10901417 10901711 -207135447 - AluSg SINE Alu -20 290 1 228 211 18 18 chr3 10902556 10902613 -207134545 + LTR40b LTR ERVL 329 385 -77 870 244 73 0 chr3 10902640 10902874 -207134284 - MER5C DNA MER1_type -73 251 1 203 250 40 40 chr3 10902933 10903009 -207134149 + MIR SINE MIR 187 262 0 1947 134 42 0 chr3 10904727 10905011 -207132147 + AluSx SINE Alu 3 298 -14 947 209 134 11 chr3 10905983 10906260 -207130898 - MLT1D LTR MaLR -29 476 166 1326 164 108 16 chr3 10906260 10906775 -207130383 + LTR36 LTR ERV1 1 611 0 843 194 6 12 chr3 10906775 10906945 -207130213 - MLT1D LTR MaLR -336 169 1 905 110 0 14 chr3 10906961 10907107 -207130051 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 1411 256 152 16 chr3 10908625 10909133 -207128025 + MLT1G LTR MaLR 14 590 0 206 265 20 0 chr3 10909764 10909813 -207127345 + L2 LINE L2 2708 2757 -557 269 244 277 38 chr3 10909906 10910119 -207127039 - L2 LINE L2 -16 3297 3034 22 0 0 0 chr3 10910199 10910221 -207126937 + AT_rich Low_complexity Low_complexity 1 22 0 382 265 54 0 chr3 10910509 10910656 -207126502 - L1MC5 LINE L1 -546 7415 7261 289 308 5 56 chr3 10910782 10910871 -207126287 - L1MC4 LINE L1 -743 7299 7224 1958 154 3 10 chr3 10910871 10911182 -207125976 - AluSc SINE Alu 0 309 1 289 308 5 56 chr3 10911182 10911287 -207125871 - L1MC4 LINE L1 -818 7224 7115 1616 141 8 0 chr3 10911437 10911678 -207125480 - AluY SINE Alu 0 311 69 522 326 54 15 chr3 10911725 10911753 -207125405 - L1MC4a LINE L1 -911 6897 6872 1132 172 84 116 chr3 10911753 10912218 -207124940 - LTR7 LTR ERV1 0 450 1 522 326 54 15 chr3 10912218 10912521 -207124637 - L1MC4a LINE L1 -936 6872 6633 34407 94 16 14 chr3 10912571 10916274 -207120884 + L1PA6 LINE L1 11 3733 -2421 441 0 0 0 chr3 10916274 10916323 -207120835 + (CA)n Simple_repeat Simple_repeat 2 50 0 34407 94 16 14 chr3 10916323 10918751 -207118407 + L1PA6 LINE L1 3733 6154 0 338 288 86 74 chr3 10918813 10919056 -207118102 - L1MC4a LINE L1 -1283 6525 6280 381 250 62 81 chr3 10919499 10919626 -207117532 - L1ME1 LINE L1 -315 5851 5723 303 71 0 0 chr3 10919626 10919668 -207117490 + (TG)n Simple_repeat Simple_repeat 2 43 0 381 250 62 81 chr3 10919668 10919812 -207117346 - L1ME1 LINE L1 -443 5723 5585 5422 86 33 10 chr3 10919827 10920053 -207117105 + L1PA10 LINE L1 5332 5551 -617 3709 199 24 75 chr3 10920053 10921075 -207116083 + LTR5 LTR ERVK 1 969 0 5422 86 33 10 chr3 10921075 10921666 -207115492 + L1PA10 LINE L1 5551 6168 0 260 250 114 23 chr3 10921684 10921772 -207115386 - L1ME1 LINE L1 -2471 5571 5476 1326 223 59 48 chr3 10921795 10922326 -207114832 - L1ME1 LINE L1 -105 6061 5593 288 314 29 6 chr3 10922325 10922497 -207114661 - L1MEc LINE L1 -5411 985 810 * 547 206 0 87 chr3 10922504 10922569 -207114589 - FLAM_A SINE Alu -187 115 65 1412 229 17 7 chr3 10922569 10922866 -207114292 + AluJb SINE Alu 1 300 -12 547 206 0 87 chr3 10922866 10922926 -207114232 - FLAM_A SINE Alu -237 65 1 598 287 84 28 chr3 10922934 10923584 -207113574 - L1MEc LINE L1 -5634 762 36 900 332 115 37 chr3 10924016 10924823 -207112335 - L2 LINE L2 -477 2837 1968 259 298 96 56 chr3 10925208 10925406 -207111752 - MIR SINE MIR -29 233 28 207 258 25 126 chr3 10925895 10926057 -207111101 - MIR SINE MIR -56 152 5 343 320 33 8 chr3 10926748 10926870 -207110288 + MIR SINE MIR 27 151 -57 924 238 111 23 chr3 10926944 10927414 -207109744 + L1M4 LINE L1 2211 2721 -3425 328 272 121 91 chr3 10927428 10927636 -207109522 + L1M4c LINE L1 1349 1572 -4812 1915 129 44 35 chr3 10927636 10927976 -207109182 + MER61A LTR ERV1 1 343 0 328 272 121 91 chr3 10927976 10928098 -207109060 + L1M4c LINE L1 1572 1689 -4695 348 330 75 5 chr3 10928495 10928695 -207108463 + L1M4c LINE L1 2470 2683 -3699 245 360 7 14 chr3 10929933 10930072 -207107086 - L3 LINE CR1 -191 1386 1249 444 37 0 0 chr3 10930208 10930262 -207106896 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 222 240 70 50 chr3 10930685 10930785 -207106373 + MER5B DNA MER1_type 76 177 -1 301 244 70 23 chr3 10930979 10931065 -207106093 + MER5A DNA MER1_type 14 103 -86 1851 189 83 41 chr3 10931134 10931594 -207105564 - MLT2B3 LTR ERVL -1 553 75 362 104 60 0 chr3 10931691 10931758 -207105400 - MLT2B3 LTR ERVL -483 71 1 283 296 93 9 chr3 10932077 10932185 -207104973 + MIR SINE MIR 94 210 -52 646 329 40 4 chr3 10932649 10932877 -207104281 - MIR SINE MIR -7 255 20 236 360 67 0 chr3 10932897 10932972 -207104186 - L2 LINE L2 -50 3222 3143 239 284 103 17 chr3 10934439 10934555 -207102603 - MER117 DNA MER1_type -54 143 18 539 314 114 36 chr3 10934833 10935035 -207102123 - L2 LINE L2 -503 2811 2626 1210 196 38 92 chr3 10935035 10935427 -207101731 - MLT1A2 LTR MaLR -3 371 1 539 314 114 36 chr3 10935427 10935609 -207101549 - L2 LINE L2 -688 2626 2397 391 283 38 38 chr3 10935739 10935898 -207101260 - MIR SINE MIR 0 262 104 455 304 84 56 chr3 10935939 10936298 -207100860 + MLT1I LTR MaLR 40 408 -1 3348 121 26 31 chr3 10937084 10937670 -207099488 - LTR1 LTR ERV1 0 785 203 1191 138 11 46 chr3 10937664 10937925 -207099233 - LTR1 LTR ERV1 -533 252 1 * 305 308 15 23 chr3 10938113 10938243 -207098915 - MLT1K LTR MaLR -18 570 442 216 0 0 0 chr3 10938387 10938411 -207098747 + (A)n Simple_repeat Simple_repeat 1 24 0 492 317 114 51 chr3 10938854 10939452 -207097706 - L2 LINE L2 -15 3257 2629 237 65 0 0 chr3 10939735 10939766 -207097392 + (T)n Simple_repeat Simple_repeat 1 31 0 342 327 154 3 chr3 10941628 10941855 -207095303 - MIR SINE MIR -1 261 8 279 0 0 0 chr3 10942875 10942906 -207094252 + (CA)n Simple_repeat Simple_repeat 2 32 0 221 57 29 0 chr3 10942906 10942941 -207094217 + (GA)n Simple_repeat Simple_repeat 1 36 0 506 208 28 56 chr3 10943058 10943202 -207093956 + MLT1J LTR MaLR 3 142 -369 867 252 100 29 chr3 10943316 10943657 -207093501 + LTR16C LTR ERVL 127 491 0 580 294 65 26 chr3 10943828 10944059 -207093099 + MIR SINE MIR 17 256 -6 225 257 40 14 chr3 10944582 10944656 -207092502 + L2 LINE L2 2686 2761 -553 241 390 48 7 chr3 10944778 10944924 -207092234 + L2 LINE L2 2922 3073 -199 529 274 37 0 chr3 10945342 10945506 -207091652 + MIR SINE MIR 93 262 0 302 391 36 0 chr3 10945716 10945826 -207091332 + L2 LINE L2 3147 3260 -12 296 146 0 36 chr3 10946133 10946188 -207090970 + L2 LINE L2 3257 3309 -4 1796 172 3 25 chr3 10946343 10946694 -207090464 - AluJo SINE Alu 0 344 1 183 328 246 0 chr3 10947338 10947460 -207089698 + MIR SINE MIR 40 191 -71 226 314 64 64 chr3 10947707 10947863 -207089295 - MIR SINE MIR -87 175 20 297 253 0 38 chr3 10947934 10948013 -207089145 - MIR SINE MIR -61 201 126 339 259 44 15 chr3 10948095 10948230 -207088928 - MLT1K LTR MaLR -76 512 374 235 262 0 16 chr3 10950254 10950315 -207086843 + MLT1K LTR MaLR 187 246 -342 369 324 3 40 chr3 10952020 10952338 -207084820 + GA-rich Low_complexity Low_complexity 1 306 0 805 264 116 60 chr3 10953094 10953228 -207083930 + LTR16A1 LTR ERVL 3 128 -329 1976 147 3 26 chr3 10953228 10953534 -207083624 + AluSx SINE Alu 3 301 -11 805 264 116 60 chr3 10953534 10953830 -207083328 + LTR16A1 LTR ERVL 128 457 0 3854 167 34 47 chr3 10954727 10955522 -207081636 + LTR1 LTR ERV1 1 785 0 198 258 8 142 chr3 10955536 10955656 -207081502 + L2 LINE L2 3168 3271 -1 464 179 42 32 chr3 10956009 10956104 -207081054 + MER5A DNA MER1_type 4 99 -90 414 306 127 44 chr3 10956220 10956460 -207080698 + LTR16C LTR ERVL 72 357 -134 2849 228 80 18 chr3 10956460 10957238 -207079920 - LTR1B LTR ERV1 0 826 1 414 306 127 44 chr3 10957238 10957383 -207079775 + LTR16C LTR ERVL 357 489 -2 370 310 62 0 chr3 10957482 10957627 -207079531 + MER63A DNA MER1_type 57 210 0 987 307 63 65 chr3 10957783 10958161 -207078997 - L2 LINE L2 0 3272 2895 2150 137 0 3 chr3 10958161 10958474 -207078684 + AluSq SINE Alu 1 312 -1 987 307 63 65 chr3 10958474 10958919 -207078239 - L2 LINE L2 -377 2895 2432 207 0 0 0 chr3 10958944 10958967 -207078191 + (T)n Simple_repeat Simple_repeat 1 23 0 982 148 0 67 chr3 10959289 10959499 -207077659 + MER44D DNA MER2_type 29 494 -115 5998 98 9 7 chr3 10959503 10960396 -207076762 - L1PA10 LINE L1 -12 6156 5262 353 328 19 58 chr3 10960945 10961134 -207076024 - MIR3 SINE MIR -36 172 27 239 257 216 16 chr3 10961590 10961738 -207075420 + MIR SINE MIR 13 184 -55 380 358 57 0 chr3 10961752 10961875 -207075283 - L2 LINE L2 -6 3266 3137 2214 104 10 3 chr3 10961941 10962238 -207074920 + AluSx SINE Alu 1 299 -13 336 318 36 26 chr3 10963370 10963562 -207073596 + MLT1K LTR MaLR 395 588 0 1806 142 48 43 chr3 10963565 10963938 -207073220 + THE1C LTR MaLR 1 375 0 420 185 11 0 chr3 10964036 10964128 -207073030 - MER58B DNA MER1_type -9 332 240 2545 164 31 7 chr3 10965809 10966259 -207070899 - LOR1b LTR ERV1 0 461 1 227 266 0 0 chr3 10966778 10966842 -207070316 - MER117 DNA MER1_type -133 64 1 232 407 0 0 chr3 10967055 10967141 -207070017 + L2 LINE L2 2939 3024 -248 197 279 115 0 chr3 10967825 10967886 -207069272 + MIR SINE MIR 81 148 -114 514 266 41 35 chr3 10968015 10968184 -207068974 - MIR SINE MIR -58 204 35 617 267 46 63 chr3 10968392 10968677 -207068481 + MLT1J LTR MaLR 232 511 0 203 313 12 12 chr3 10969107 10969190 -207067968 - MIR SINE MIR -16 246 164 314 308 163 0 chr3 10969811 10969983 -207067175 + LTR33 LTR ERVL 1 200 -321 282 324 21 7 chr3 10970121 10970263 -207066895 + LTR33 LTR ERVL 374 517 -4 230 266 16 0 chr3 10970861 10970925 -207066233 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 1007 149 0 6 chr3 10971094 10971275 -207065883 + L1 LINE L1 3389 3568 -2578 13389 144 36 20 chr3 10972400 10974780 -207062378 + Tigger1 DNA MER2_type 1 2418 0 2302 116 0 0 chr3 10974824 10975126 -207062032 - AluSx SINE Alu -10 302 1 191 122 0 24 chr3 10975312 10975353 -207061805 + (TA)n Simple_repeat Simple_repeat 2 41 0 775 245 66 9 chr3 10975852 10976064 -207061094 - MER58A DNA MER1_type 0 224 1 2371 188 47 2 chr3 10976260 10976707 -207060451 + LTR24 LTR ERV1 1 467 0 497 222 22 89 chr3 10976771 10976951 -207060207 + MIR3 SINE MIR 20 187 -21 201 348 111 39 chr3 10977277 10977484 -207059674 + L3 LINE CR1 1356 1577 0 312 177 0 152 chr3 10977640 10977719 -207059439 + L2 LINE L2 3246 3312 -1 266 307 94 19 chr3 10979401 10979613 -207057545 + L2 LINE L2 2749 2976 -338 327 188 38 38 chr3 10979768 10979928 -207057230 + (TTGTG)n Simple_repeat Simple_repeat 1 160 0 191 122 0 24 chr3 10980433 10980474 -207056684 + (TA)n Simple_repeat Simple_repeat 2 41 0 775 245 66 9 chr3 10980980 10981192 -207055966 - MER58A DNA MER1_type 0 224 1 1327 196 62 9 chr3 10981388 10981709 -207055449 + LTR24 LTR ERV1 1 338 -129 6029 38 0 1 chr3 10982078 10982847 -207054311 - L1P LINE L1 -1931 4215 3448 8990 39 1 1 chr3 10982849 10984044 -207053114 + L1P LINE L1 2251 3445 -2701 * 9612 63 10 2 chr3 10984038 10985388 -207051770 + L1P LINE L1 3996 5356 -790 1156 74 27 3 chr3 10985383 10985569 -207051589 - L1P2 LINE L1 -623 5531 5343 * 2222 184 45 45 chr3 10986489 10986999 -207050159 + MER67D LTR ERV1 1 510 -4 952 219 40 48 chr3 10987077 10987328 -207049830 + L2 LINE L2 2446 2694 -620 703 249 16 21 chr3 10987415 10987604 -207049554 + MER5A DNA MER1_type 1 188 -1 579 301 87 51 chr3 10987618 10987953 -207049205 + L2 LINE L2 2953 3299 -14 433 253 60 86 chr3 10987990 10988247 -207048911 - MER113 DNA MER1_type? -182 339 92 2146 108 0 14 chr3 10988247 10988534 -207048624 + AluSg SINE Alu 1 283 -27 433 253 60 86 chr3 10988534 10988624 -207048534 - MER113 DNA MER1_type? -429 92 1 584 341 85 23 chr3 10989483 10989920 -207047238 + LTR16C LTR ERVL 2 465 -26 887 136 31 0 chr3 10991011 10991173 -207045985 - L1MC1 LINE L1 -223 6110 5944 290 322 35 9 chr3 10991174 10991289 -207045869 - MIR SINE MIR -98 164 47 212 271 0 0 chr3 10991554 10991613 -207045545 - L2 LINE L2 0 3272 3214 418 260 43 117 chr3 10992302 10992410 -207044748 - MIR SINE MIR -12 250 166 1583 206 39 0 chr3 10992410 10992692 -207044466 + AluJb SINE Alu 1 293 -19 418 260 43 117 chr3 10992692 10992814 -207044344 - MIR SINE MIR -96 166 37 504 298 36 58 chr3 10992879 10993104 -207044054 + L2 LINE L2 3053 3272 0 721 214 71 0 chr3 10993204 10993358 -207043800 + MER63B DNA MER1_type 1 165 -271 197 306 153 0 chr3 10993412 10993510 -207043648 + MIR3 SINE MIR 91 203 -5 198 404 28 0 chr3 10994444 10994553 -207042605 - L2 LINE L2 -7 3265 3154 763 254 105 13 chr3 10994650 10994878 -207042280 + MIR SINE MIR 14 262 0 1703 141 45 14 chr3 10995966 10996256 -207040902 + AluSq SINE Alu 1 299 -14 1922 100 4 0 chr3 10996878 10997127 -207040031 - AluSp SINE Alu -17 296 47 2108 142 9 0 chr3 10997942 10998287 -207038871 - L1PB1 LINE L1 -8 6143 5796 342 131 0 0 chr3 10998297 10998411 -207038747 + (TA)n Simple_repeat Simple_repeat 1 114 0 343 298 9 18 chr3 10998412 10998526 -207038632 + L1MC4 LINE L1 6616 6728 -1314 12698 199 59 11 chr3 10998532 11004577 -207032581 - L1P5 LINE L1 -361 6506 16 643 304 143 36 chr3 11004825 11005352 -207031806 + L2 LINE L2 2723 3312 -1 298 328 23 46 chr3 11005366 11005540 -207031618 - MIR SINE MIR 0 262 93 2199 157 67 10 chr3 11005626 11006027 -207031131 + MSTB LTR MaLR 1 424 -2 181 339 53 53 chr3 11007195 11007366 -207029792 - L2 LINE L2 0 3272 3102 182 350 82 25 chr3 11007863 11008217 -207028941 - L2 LINE L2 -897 2417 2044 440 293 127 29 chr3 11008753 11008958 -207028200 - L2 LINE L2 0 3313 3089 1635 192 3 23 chr3 11009503 11009805 -207027353 - AluJo SINE Alu -16 296 1 12918 148 25 42 chr3 11010392 11010736 -207026422 + Tigger1 DNA MER2_type 1 349 -2069 180 0 0 0 chr3 11010736 11010756 -207026402 + (TC)n Simple_repeat Simple_repeat 1 20 0 12918 148 25 42 chr3 11010756 11011434 -207025724 + Tigger1 DNA MER2_type 349 1037 -1381 2233 114 3 0 chr3 11011434 11011742 -207025416 + AluSq SINE Alu 1 309 -4 12918 148 25 42 chr3 11011742 11012187 -207024971 + Tigger1 DNA MER2_type 1037 1488 -930 2566 33 0 3 chr3 11012187 11012488 -207024670 - AluY SINE Alu -11 300 1 12918 148 25 42 chr3 11012488 11013477 -207023681 + Tigger1 DNA MER2_type 1488 2418 0 509 214 209 8 chr3 11013491 11013725 -207023433 + MER113 DNA MER1_type? 121 401 -120 904 312 74 17 chr3 11013771 11014178 -207022980 + LTR16A LTR ERVL 16 445 -5 1590 119 0 21 chr3 11014187 11014423 -207022735 - AluSg/x SINE Alu -3 309 79 1030 39 0 0 chr3 11014505 11014634 -207022524 + L1PA5 LINE L1 6026 6154 0 1091 181 50 23 chr3 11014862 11015166 -207021992 - MER33 DNA MER1_type -22 302 1 591 317 116 0 chr3 11015767 11015991 -207021167 - MIR SINE MIR -3 259 10 216 194 0 0 chr3 11016159 11016195 -207020963 - MIR SINE MIR -59 149 114 273 185 0 0 chr3 11017100 11017154 -207020004 + MER116 DNA Mariner 7 60 -20 195 100 0 0 chr3 11017387 11017417 -207019741 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5098 251 54 25 chr3 11017808 11018571 -207018587 + L1MB7 LINE L1 19 758 -5886 342 0 0 0 chr3 11018571 11018609 -207018549 + (CA)n Simple_repeat Simple_repeat 1 38 0 5098 251 54 25 chr3 11018609 11019630 -207017528 + L1MB7 LINE L1 758 1748 -4896 2176 92 0 44 chr3 11019630 11019945 -207017213 - AluY SINE Alu -10 301 1 5098 251 54 25 chr3 11019945 11021593 -207015565 + L1MB7 LINE L1 1748 3655 -2989 1457 130 31 0 chr3 11021640 11021863 -207015295 - MER30 DNA MER1_type 0 230 1 3415 219 29 16 chr3 11021956 11022739 -207014419 + L1MB7 LINE L1 5089 5893 -789 366 79 40 0 chr3 11022739 11022815 -207014343 + (TA)n Simple_repeat Simple_repeat 2 80 0 3415 219 29 16 chr3 11022815 11023519 -207013639 + L1MB7 LINE L1 5893 6587 -95 1836 182 18 12 chr3 11023520 11023861 -207013297 + MER61A LTR ERV1 1 343 0 2187 158 53 11 chr3 11024185 11024669 -207012489 + MER61A-int LTR ERV1 240 777 -4440 268 93 0 0 chr3 11024662 11024705 -207012453 + MER61A-int LTR ERV1 1320 1362 -3855 * 18976 120 31 19 chr3 11024707 11027016 -207010142 + MER61A-int LTR ERV1 2226 3510 -1707 2407 83 3 3 chr3 11027016 11027317 -207009841 + AluY SINE Alu 1 301 -10 18976 120 31 19 chr3 11027317 11029047 -207008111 + MER61A-int LTR ERV1 3510 5217 0 2112 155 9 6 chr3 11029047 11029389 -207007769 + MER61A LTR ERV1 1 343 0 387 125 56 0 chr3 11029395 11029467 -207007691 + L1MB7 LINE L1 6591 6666 -16 294 179 0 0 chr3 11029532 11029588 -207007570 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 198 143 0 0 chr3 11029588 11029623 -207007535 + (CA)n Simple_repeat Simple_repeat 2 36 0 2720 202 59 12 chr3 11029992 11030586 -207006572 - LTR26E LTR ERV1 0 622 1 299 275 75 0 chr3 11030588 11030668 -207006490 - MIR SINE MIR -87 175 90 580 235 66 0 chr3 11030687 11030853 -207006305 + MLT1E LTR MaLR 1 177 -416 2771 173 92 25 chr3 11030861 11031472 -207005686 + LTR51 LTR ERV1 1 657 -14 5787 66 31 28 chr3 11031472 11032250 -207004908 + LTR17 LTR ERV1 1 780 0 2771 173 92 25 chr3 11032250 11032267 -207004891 + LTR51 LTR ERV1 657 671 0 1056 196 51 126 chr3 11032317 11032478 -207004680 + MLT1E LTR MaLR 210 329 -264 2718 180 73 49 chr3 11032478 11033188 -207003970 - LTR8A LTR ERV1 0 727 1 1056 196 51 126 chr3 11033188 11033398 -207003760 + MLT1E LTR MaLR 329 553 -40 2350 138 35 45 chr3 11033407 11034006 -207003152 + MER4B LTR ERV1 4 766 0 340 222 56 116 chr3 11034081 11034260 -207002898 - MER3 DNA MER1_type 0 209 44 2908 196 53 6 chr3 11034260 11034449 -207002709 + MER82 DNA MER2_type 1 180 -473 819 80 0 0 chr3 11034449 11034561 -207002597 + (TA)n Simple_repeat Simple_repeat 1 112 0 2908 196 53 6 chr3 11034561 11034992 -207002166 + MER82 DNA MER2_type 180 650 -3 340 222 56 116 chr3 11034992 11035028 -207002130 - MER3 DNA MER1_type -165 44 7 399 331 47 12 chr3 11035471 11035643 -207001515 - MER5A DNA MER1_type -5 184 7 222 118 0 0 chr3 11036592 11036626 -207000532 + (T)n Simple_repeat Simple_repeat 1 34 0 378 0 0 0 chr3 11037011 11037053 -207000105 + (TG)n Simple_repeat Simple_repeat 2 43 0 298 355 48 28 chr3 11037254 11037502 -206999656 + L2 LINE L2 2827 3079 -193 507 306 56 26 chr3 11037588 11037820 -206999338 + L2 LINE L2 3075 3313 0 190 301 49 49 chr3 11037821 11037944 -206999214 + MIR SINE MIR 140 262 0 2399 103 0 0 chr3 11039242 11039552 -206997606 + AluSq SINE Alu 1 310 -3 439 294 62 6 chr3 11039811 11039971 -206997187 - Charlie8 DNA MER1_type -2152 265 97 533 266 84 35 chr3 11040459 11040717 -206996441 - HAL1 LINE L1 -1133 1374 1089 2234 97 3 3 chr3 11040717 11041015 -206996143 - AluSx SINE Alu -14 298 1 533 266 84 35 chr3 11041015 11041150 -206996008 - HAL1 LINE L1 -1418 1089 962 2350 78 0 7 chr3 11041197 11041503 -206995655 - AluY SINE Alu -7 304 1 2511 260 39 25 chr3 11041507 11043151 -206994007 + L1MEc LINE L1 1599 3226 -2989 1457 130 31 0 chr3 11043198 11043421 -206993737 - MER30 DNA MER1_type 0 230 1 3415 219 29 17 chr3 11043514 11044298 -206992860 + L1MB7 LINE L1 4591 5395 -789 366 79 40 0 chr3 11044298 11044374 -206992784 + (TA)n Simple_repeat Simple_repeat 1 79 0 3415 219 29 17 chr3 11044374 11045078 -206992080 + L1MB7 LINE L1 5395 6089 -95 1836 182 18 12 chr3 11045079 11045420 -206991738 + MER61A LTR ERV1 1 343 0 2067 165 53 13 chr3 11045747 11046229 -206990929 + MER61A-int LTR ERV1 243 777 -4440 * 3903 103 12 5 chr3 11046222 11046882 -206990276 + MER61A-int LTR ERV1 1320 2030 -3187 439 294 62 6 chr3 11047454 11047614 -206989544 - Charlie8 DNA MER1_type -2152 265 97 677 269 76 65 chr3 11048102 11048360 -206988798 - HAL1 LINE L1 -1133 1374 1120 2234 97 3 3 chr3 11048360 11048658 -206988500 - AluSx SINE Alu -14 298 1 677 269 76 65 chr3 11048658 11048840 -206988318 - HAL1 LINE L1 -1387 1120 941 2421 65 0 7 chr3 11048840 11049146 -206988012 - AluY SINE Alu -7 304 1 677 269 76 65 chr3 11049146 11049339 -206987819 - HAL1 LINE L1 -1566 941 733 2069 148 0 0 chr3 11049491 11049801 -206987357 + AluSx SINE Alu 1 310 -2 353 194 21 11 chr3 11049945 11050038 -206987120 - MER53 DNA DNA -8 181 88 266 111 74 0 chr3 11050023 11050077 -206987081 + MER53 DNA DNA 126 183 -6 * 265 301 43 80 chr3 11050089 11050337 -206986821 - HAL1 LINE L1 -2075 432 205 635 224 6 33 chr3 11050337 11050520 -206986638 - MER104 DNA MER2_type -1 179 2 265 301 43 80 chr3 11050520 11050709 -206986449 - HAL1 LINE L1 -2302 205 11 1073 259 52 32 chr3 11051232 11051758 -206985400 - L2 LINE L2 -34 3279 2749 312 177 0 152 chr3 11053437 11053516 -206983642 - L2 LINE L2 -1 3312 3246 201 348 111 39 chr3 11053672 11053879 -206983279 - L3 LINE CR1 0 1577 1356 497 222 22 89 chr3 11054205 11054385 -206982773 - MIR3 SINE MIR -21 187 20 2344 190 47 2 chr3 11054449 11054896 -206982262 - LTR24 LTR ERV1 0 467 1 775 245 66 9 chr3 11055092 11055304 -206981854 + MER58A DNA MER1_type 1 224 0 191 122 0 24 chr3 11055803 11055844 -206981314 + (TA)n Simple_repeat Simple_repeat 2 41 0 2107 136 0 0 chr3 11056030 11056332 -206980826 + AluSx SINE Alu 1 302 -10 5101 233 88 33 chr3 11056367 11057353 -206979805 - L1M4c LINE L1 -4794 1852 738 342 0 0 0 chr3 11057353 11057391 -206979767 + (TG)n Simple_repeat Simple_repeat 1 38 0 5101 233 88 33 chr3 11057391 11058154 -206979004 - L1M4c LINE L1 -5908 738 19 195 100 0 0 chr3 11058546 11058576 -206978582 + (TAA)n Simple_repeat Simple_repeat 1 30 0 273 185 0 0 chr3 11058810 11058864 -206978294 - MER116 DNA Mariner -20 60 7 216 194 0 0 chr3 11059770 11059806 -206977352 + MIR SINE MIR 114 149 -59 591 317 116 0 chr3 11059974 11060198 -206976960 + MIR SINE MIR 10 259 -3 1091 181 50 23 chr3 11060799 11061103 -206976055 + MER33 DNA MER1_type 1 302 -22 1030 39 0 0 chr3 11061331 11061460 -206975698 - L1PA5 LINE L1 0 6154 6026 1590 119 0 21 chr3 11061542 11061778 -206975380 + AluSg/x SINE Alu 79 309 -3 878 314 74 17 chr3 11061787 11062194 -206974964 - LTR16A LTR ERVL -5 445 16 507 224 71 11 chr3 11062291 11062474 -206974684 - MER113 DNA MER1_type? -207 314 121 746 168 37 6 chr3 11062488 11062649 -206974509 - Tigger1 DNA MER2_type 0 2418 2253 226 278 56 8 chr3 11062974 11063100 -206974058 + L1MD3 LINE L1 7807 7938 -57 315 322 0 0 chr3 11063352 11063442 -206973716 - L1MC4 LINE L1 -1339 6703 6614 414 314 74 26 chr3 11063494 11063723 -206973435 - MIR SINE MIR -11 251 12 1609 228 89 9 chr3 11063786 11064234 -206972924 - MLT1E3 LTR MaLR -2 622 139 271 83 0 0 chr3 11064296 11064332 -206972826 - MLT1E3 LTR MaLR -584 40 5 2289 107 13 0 chr3 11064383 11064682 -206972476 + AluSx SINE Alu 1 303 -9 5721 55 16 0 chr3 11064958 11065729 -206971429 - L1P LINE L1 -1368 4778 3996 * 8954 42 0 2 chr3 11065723 11066920 -206970238 - L1PA4 LINE L1 -2701 3445 2251 16106 33 1 0 chr3 11066922 11069630 -206967528 + L1PA4 LINE L1 3448 6155 0 27393 89 9 3 chr3 11069642 11073627 -206963531 - L1P LINE L1 -2135 4011 4 219 114 0 0 chr3 11073878 11073913 -206963245 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 649 330 44 0 chr3 11074136 11074363 -206962795 + MIR SINE MIR 2 238 -24 388 257 31 29 chr3 11075648 11075779 -206961379 + MIR SINE MIR 36 168 -40 854 256 91 20 chr3 11076062 11076457 -206960701 + LTR37A LTR ERV1 4 426 0 640 250 105 15 chr3 11076719 11076919 -206960239 + MLT1J LTR MaLR 294 511 0 208 277 26 142 chr3 11078186 11078341 -206958817 - MER5A DNA MER1_type -49 140 4 298 210 0 0 chr3 11078445 11078507 -206958651 - MSTD LTR MaLR 0 396 335 238 179 18 18 chr3 11078523 11078579 -206958579 + (TA)n Simple_repeat Simple_repeat 2 57 0 309 202 119 0 chr3 11078579 11078663 -206958495 - L1MC4 LINE L1 -1337 6705 6612 318 255 0 43 chr3 11078678 11078772 -206958386 + L1MC4 LINE L1 6616 6705 -1337 366 147 52 15 chr3 11078800 11078936 -206958222 + (TA)n Simple_repeat Simple_repeat 1 141 0 336 244 35 12 chr3 11079089 11079175 -206957983 - L1MC4 LINE L1 -1340 6702 6615 511 121 50 18 chr3 11079180 11079466 -206957692 + (TA)n Simple_repeat Simple_repeat 1 295 0 415 178 43 21 chr3 11079487 11079813 -206957345 + (TA)n Simple_repeat Simple_repeat 1 333 0 2251 87 3 3 chr3 11079826 11080114 -206957044 - AluSp SINE Alu -25 288 1 28 0 0 0 chr3 11080121 11080149 -206957009 + AT_rich Low_complexity Low_complexity 1 28 0 1409 240 47 36 chr3 11080179 11080566 -206956592 - MLT2B3 LTR ERVL -39 515 125 2102 181 46 46 chr3 11080667 11081163 -206955995 - MER67D LTR ERV1 -18 496 1 1156 74 27 3 chr3 11082106 11082292 -206954866 + L1P2 LINE L1 5343 5531 -623 * 14348 49 4 1 chr3 11082287 11084190 -206952968 - L1P LINE L1 -790 5356 3448 7962 37 0 1 chr3 11084192 11085238 -206951920 + L1P LINE L1 2251 3295 -2851 387 259 26 43 chr3 11085395 11085511 -206951647 + L2 LINE L2 3200 3313 0 1219 188 135 9 chr3 11087185 11087504 -206949654 + MLT2D LTR ERVL 8 366 -48 2093 120 0 32 chr3 11087651 11087959 -206949199 + AluSx SINE Alu 9 306 -6 206 313 36 24 chr3 11088655 11088738 -206948420 - L2 LINE L2 0 3272 3189 4165 175 54 27 chr3 11089655 11090550 -206946608 - MER21A LTR ERV1 0 931 13 217 125 62 23 chr3 11090556 11090684 -206946474 + (TA)n Simple_repeat Simple_repeat 2 134 0 738 184 46 0 chr3 11091351 11091525 -206945633 + L1MD3 LINE L1 7804 7985 -10 2412 128 18 3 chr3 11091765 11092147 -206945011 - Tigger2 DNA MER2_type 0 2718 2331 608 213 0 0 chr3 11092147 11092255 -206944903 - AluSc SINE Alu -70 239 132 1267 132 5 5 chr3 11092255 11092467 -206944691 - Tigger2 DNA MER2_type -227 2491 2280 321 211 0 28 chr3 11092465 11092536 -206944622 - Tigger2 DNA MER2_type -2649 69 1 * 24 0 0 0 chr3 11092670 11092694 -206944464 + AT_rich Low_complexity Low_complexity 1 24 0 211 333 103 0 chr3 11093624 11093741 -206943417 + L2 LINE L2 3182 3310 -3 472 234 19 91 chr3 11095201 11095355 -206941803 - L2 LINE L2 -2 3311 3169 265 228 41 76 chr3 11095440 11095585 -206941573 + MLT1K LTR MaLR 429 568 -20 247 273 65 0 chr3 11096199 11096276 -206940882 - MIR SINE MIR -3 259 178 473 324 112 27 chr3 11096285 11096615 -206940543 - MLT1J2 LTR MaLR -21 429 72 247 253 6 118 chr3 11098174 11098344 -206938814 - LTR16A LTR ERVL -188 262 112 435 342 87 27 chr3 11098477 11098810 -206938348 + LTR16C LTR ERVL 130 482 -9 1462 157 141 0 chr3 11098845 11099093 -206938065 - AluSg SINE Alu -27 283 1 188 316 0 18 chr3 11099095 11099152 -206938006 + MIR SINE MIR 90 145 -63 180 161 0 0 chr3 11099197 11099228 -206937930 + L2 LINE L2 3263 3293 -20 269 247 41 10 chr3 11099896 11099988 -206937170 + MER117 DNA MER1_type 36 130 -67 1560 117 163 85 chr3 11099988 11100363 -206936795 - MER4A LTR ERV1 0 664 261 705 71 0 10 chr3 11100363 11100462 -206936696 - MER4A LTR ERV1 -566 98 1 349 190 51 15 chr3 11100597 11100734 -206936424 + (TA)n Simple_repeat Simple_repeat 1 142 0 438 338 6 12 chr3 11100846 11101006 -206936152 + MIR SINE MIR 72 230 -32 23 0 0 0 chr3 11101156 11101179 -206935979 + AT_rich Low_complexity Low_complexity 1 23 0 230 257 36 0 chr3 11101388 11101528 -206935630 + (TA)n Simple_repeat Simple_repeat 2 146 0 326 306 6 45 chr3 11101612 11101769 -206935389 + MIR SINE MIR 20 170 -92 334 272 192 8 chr3 11102183 11102308 -206934850 + MIR SINE MIR 40 187 -75 27 0 0 0 chr3 11102814 11102841 -206934317 + AT_rich Low_complexity Low_complexity 1 27 0 847 93 0 0 chr3 11102844 11102952 -206934206 - FRAM SINE Alu -30 146 39 30 0 0 0 chr3 11102980 11103010 -206934148 + AT_rich Low_complexity Low_complexity 1 30 0 393 211 88 26 chr3 11103033 11103147 -206934011 - L1ME1 LINE L1 -50 6116 5996 503 268 100 67 chr3 11104724 11104963 -206932195 + MIR SINE MIR 3 249 -13 408 272 105 37 chr3 11105089 11105280 -206931878 + MLT1I LTR MaLR 1 204 -205 519 216 16 24 chr3 11105306 11105455 -206931703 + MLT1I LTR MaLR 280 409 0 460 218 171 18 chr3 11105721 11105891 -206931267 - MER3 DNA MER1_type -7 202 7 197 252 178 28 chr3 11107035 11107142 -206930016 + MIR3 SINE MIR 85 207 -1 2367 97 10 0 chr3 11107142 11107451 -206929707 - AluSx SINE Alu 0 312 1 1264 247 82 5 chr3 11107527 11107932 -206929226 - L1ME1 LINE L1 -7 6159 5724 573 246 94 6 chr3 11108279 11108450 -206928708 + MER5A DNA MER1_type 2 187 -2 313 250 0 34 chr3 11108535 11108623 -206928535 - MLT2E LTR ERVL -512 116 32 25 0 0 0 chr3 11109462 11109487 -206927671 + AT_rich Low_complexity Low_complexity 1 25 0 246 278 247 0 chr3 11109739 11109836 -206927322 + L2 LINE L2 2201 2321 -993 302 311 9 9 chr3 11110385 11110491 -206926667 - MIR SINE MIR -46 216 111 302 242 48 0 chr3 11110756 11110818 -206926340 + L2 LINE L2 3207 3271 -1 1963 158 0 16 chr3 11111398 11111714 -206925444 - AluSx SINE Alu -1 311 1 581 49 12 0 chr3 11111781 11111862 -206925296 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 302 250 150 25 chr3 11111868 11112068 -206925090 + L1MC4a LINE L1 5708 5932 -1876 240 227 0 0 chr3 11112079 11112123 -206925035 - L2 LINE L2 -8 3264 3221 204 286 78 0 chr3 11112371 11112448 -206924710 + L2 LINE L2 1581 1663 -1651 214 388 54 0 chr3 11112622 11112769 -206924389 + L2 LINE L2 2308 2462 -852 221 355 0 13 chr3 11112780 11112856 -206924302 + L2 LINE L2 3184 3258 -14 731 272 67 70 chr3 11112891 11113307 -206923851 + MLT1J2 LTR MaLR 22 436 -14 1644 191 34 8 chr3 11114915 11115437 -206921721 + L1MB5 LINE L1 4902 5431 -743 3041 233 109 23 chr3 11115443 11116054 -206921104 + L1M4c LINE L1 1237 1794 -4588 2093 143 187 9 chr3 11116054 11116493 -206920665 - LTR44 LTR ERV1 -2 517 1 3041 233 109 23 chr3 11116493 11117073 -206920085 + L1M4c LINE L1 1794 2532 -3850 1653 191 30 1 chr3 11117088 11117468 -206919690 + L1MB5 LINE L1 5787 6178 -2 408 230 9 0 chr3 11117500 11117613 -206919545 + L1ME LINE L1 698 811 -5259 297 0 0 0 chr3 11117653 11117686 -206919472 + (CA)n Simple_repeat Simple_repeat 2 34 0 2564 64 0 0 chr3 11118367 11118678 -206918480 + AluY SINE Alu 1 311 0 403 244 117 84 chr3 11119494 11119768 -206917390 + MLT1I LTR MaLR 74 356 -53 230 93 0 23 chr3 11119974 11120017 -206917141 + (TCC)n Simple_repeat Simple_repeat 1 42 0 937 247 14 0 chr3 11120669 11120888 -206916270 - MER58A DNA MER1_type -2 222 1 382 254 111 8 chr3 11120922 11120976 -206916182 - MER5A DNA MER1_type -30 159 112 2224 117 0 0 chr3 11120976 11121275 -206915883 + AluSq SINE Alu 1 299 -14 382 254 111 8 chr3 11121275 11121346 -206915812 - MER5A DNA MER1_type -77 112 21 2042 165 63 18 chr3 11121537 11121936 -206915222 - MSTB LTR MaLR 0 426 10 320 271 54 39 chr3 11122089 11122218 -206914940 + L2 LINE L2 3183 3313 0 244 221 103 73 chr3 11122427 11122563 -206914595 + MER3 DNA MER1_type 7 146 -63 1847 243 60 33 chr3 11122580 11123184 -206913974 - L1M4 LINE L1 -5921 621 2 182 333 78 33 chr3 11123193 11123283 -206913875 + L2 LINE L2 3002 3095 -177 336 307 88 9 chr3 11123376 11123490 -206913668 + L2 LINE L2 3137 3259 -13 1879 134 10 14 chr3 11123834 11124125 -206913033 - AluSx SINE Alu -2 310 21 268 312 52 75 chr3 11124276 11124449 -206912709 + MIR3 SINE MIR 7 175 -33 192 309 59 0 chr3 11124589 11124657 -206912501 - L2 LINE L2 -5 3267 3196 1811 165 54 14 chr3 11124941 11125292 -206911866 - MLT1A1 LTR MaLR 0 365 1 298 331 29 44 chr3 11125308 11125430 -206911728 + MIR SINE MIR 113 234 -28 1728 171 86 9 chr3 11125430 11125769 -206911389 - MLT1A1 LTR MaLR 0 365 1 298 331 29 44 chr3 11125769 11125782 -206911376 + MIR SINE MIR 234 246 -16 904 204 18 44 chr3 11125792 11126017 -206911141 + MER20 DNA MER1_type 1 219 0 201 167 0 42 chr3 11126176 11126194 -206910964 + CT-rich Low_complexity Low_complexity 2 19 -51 1762 153 52 30 chr3 11126194 11126561 -206910597 + THE1C LTR MaLR 1 375 0 201 167 0 42 chr3 11126561 11126614 -206910544 + CT-rich Low_complexity Low_complexity 19 70 0 261 365 24 42 chr3 11127239 11127349 -206909809 - L2 LINE L2 -177 3095 2987 1681 232 20 22 chr3 11127349 11127857 -206909301 + Charlie4a DNA MER1_type 2 508 0 261 365 24 42 chr3 11127857 11127913 -206909245 - L2 LINE L2 -285 2987 2932 510 274 174 19 chr3 11127958 11128170 -206908988 - MIR SINE MIR -7 255 11 493 347 87 4 chr3 11128216 11128458 -206908700 - MIR SINE MIR 0 262 1 451 370 8 33 chr3 11128505 11128748 -206908410 - L2 LINE L2 -488 2826 2590 216 307 50 84 chr3 11129192 11129371 -206907787 + L3b LINE CR1 1405 1577 -6 273 182 61 0 chr3 11130296 11130362 -206906796 + L1MA3 LINE L1 6236 6305 0 748 318 39 26 chr3 11130505 11130892 -206906266 - MLT1K LTR MaLR -136 452 61 211 361 41 0 chr3 11130950 11131047 -206906111 - L3b LINE CR1 -182 1401 1301 291 45 23 0 chr3 11132408 11132452 -206904706 - MADE1 DNA Mariner -35 45 1 373 294 49 14 chr3 11132489 11132632 -206904526 - MIR SINE MIR -113 149 2 1413 183 183 67 chr3 11133412 11133430 -206903728 + MLT1F1 LTR MaLR 1 16 -551 6430 132 21 70 chr3 11133430 11134724 -206902434 - Tigger3b DNA MER2_type 0 1231 1 1413 183 183 67 chr3 11134724 11134891 -206902267 + MLT1F1 LTR MaLR 16 162 -405 1632 116 0 21 chr3 11134891 11135132 -206902026 - AluSq SINE Alu -77 236 1 1413 183 183 67 chr3 11135132 11135453 -206901705 + MLT1F1 LTR MaLR 162 567 0 253 370 131 24 chr3 11136587 11136867 -206900291 - L2 LINE L2 -269 3003 2695 228 210 48 0 chr3 11137171 11137233 -206899925 - MLT1I LTR MaLR -22 387 323 2361 80 0 46 chr3 11138754 11139079 -206898079 - AluSg SINE Alu 0 310 1 4133 196 31 5 chr3 11139873 11140071 -206897087 - L1MD2 LINE L1 -9 6350 6159 288 0 0 0 chr3 11140071 11140103 -206897055 + (TG)n Simple_repeat Simple_repeat 2 33 0 4133 196 31 5 chr3 11140103 11140794 -206896364 - L1MD2 LINE L1 -200 6159 5437 209 158 23 53 chr3 11140870 11141003 -206896155 + (TA)n Simple_repeat Simple_repeat 1 129 0 223 135 0 39 chr3 11141112 11141164 -206895994 + (TA)n Simple_repeat Simple_repeat 2 51 0 225 221 323 0 chr3 11141229 11141356 -206895802 - L1MDb LINE L1 -4244 2162 1995 621 191 104 22 chr3 11141368 11141580 -206895578 + L1MDb LINE L1 1398 1585 -4957 4425 246 61 36 chr3 11141581 11142722 -206894436 - L1MDb LINE L1 -4425 1981 827 2021 148 6 6 chr3 11142722 11143033 -206894125 - AluSx SINE Alu -1 311 1 4425 246 61 36 chr3 11143033 11143874 -206893284 - L1MDb LINE L1 -5579 827 8 29 28 0 0 chr3 11144418 11144454 -206892704 + AT_rich Low_complexity Low_complexity 1 36 0 383 250 37 28 chr3 11145550 11145658 -206891500 - L2 LINE L2 -6 3266 3158 244 333 85 0 chr3 11145688 11145817 -206891341 - L3 LINE CR1 -258 1319 1180 735 161 27 27 chr3 11145821 11145970 -206891188 - AluJo SINE Alu -163 149 1 1058 213 10 0 chr3 11146075 11146277 -206890881 - MER20 DNA MER1_type 0 219 16 503 221 139 67 chr3 11146428 11146636 -206890522 + MIR SINE MIR 40 262 0 345 82 0 0 chr3 11147096 11147145 -206890013 + (CA)n Simple_repeat Simple_repeat 1 49 0 265 345 16 54 chr3 11147876 11148061 -206889097 - MIR SINE MIR -51 211 34 1812 224 67 14 chr3 11148150 11148730 -206888428 + L1MCa LINE L1 982 1592 -4834 658 203 42 36 chr3 11148728 11148920 -206888238 + L1MC3 LINE L1 6911 7103 -682 * 262 286 0 0 chr3 11148920 11149004 -206888154 + MLT1F1 LTR MaLR 42 125 -442 477 206 0 103 chr3 11149004 11149159 -206887999 + L1MC3 LINE L1 7189 7327 -458 2204 128 0 0 chr3 11149191 11149489 -206887669 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr3 11149489 11149525 -206887633 + AT_rich Low_complexity Low_complexity 1 36 0 1368 180 30 51 chr3 11149525 11149898 -206887260 + L1MC3 LINE L1 7317 7681 -104 380 146 182 55 chr3 11149968 11150095 -206887063 + L1MC3 LINE L1 7643 7995 0 2269 86 0 38 chr3 11150108 11150452 -206886706 + AluY SINE Alu 1 332 0 896 286 49 9 chr3 11150481 11150830 -206886328 + L1MCa LINE L1 1887 2249 -4358 219 216 0 0 chr3 11151948 11151985 -206885173 + polypyrimidine Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 11151985 11152008 -206885150 + (T)n Simple_repeat Simple_repeat 1 23 0 345 327 33 20 chr3 11153232 11153382 -206883776 - MIR3 SINE MIR -10 198 47 3342 175 17 128 chr3 11154334 11154664 -206882494 + L1MC3 LINE L1 5338 5703 -2292 1207 63 0 0 chr3 11154664 11154822 -206882336 + L1PA5 LINE L1 5997 6154 0 3342 175 17 128 chr3 11154822 11155907 -206881251 + L1MC3 LINE L1 5703 6535 -1460 552 215 35 47 chr3 11155921 11156093 -206881065 + L1MC3 LINE L1 7125 7294 -491 983 217 105 43 chr3 11156103 11156407 -206880751 + MER2 DNA MER2_type 13 335 -10 220 389 22 0 chr3 11156618 11156708 -206880450 - L2 LINE L2 -45 3227 3136 814 152 8 37 chr3 11156850 11157090 -206880068 + MLT1A1 LTR MaLR 1 324 -41 834 239 143 71 chr3 11157442 11157890 -206879268 + MLT1J LTR MaLR 1 480 -31 2395 182 13 0 chr3 11158377 11158843 -206878315 - L1MC3 LINE L1 -10 7775 7304 1704 218 14 6 chr3 11159566 11159928 -206877230 + MLT1A1 LTR MaLR 1 365 0 621 263 33 16 chr3 11161507 11161849 -206875309 - LTR16A LTR ERVL -34 416 33 231 61 0 0 chr3 11162552 11162585 -206874573 + (TG)n Simple_repeat Simple_repeat 2 34 0 485 308 7 14 chr3 11163156 11163302 -206873856 + MLT1J2 LTR MaLR 65 209 -241 319 254 32 13 chr3 11163312 11163413 -206873745 + MLT1J2 LTR MaLR 302 450 0 646 332 46 11 chr3 11163428 11163708 -206873450 - L2 LINE L2 -1314 2000 1711 197 299 21 0 chr3 11163747 11163844 -206873314 + A-rich Low_complexity Low_complexity 6 104 0 237 300 10 0 chr3 11163845 11163945 -206873213 + (ATGGTG)n Simple_repeat Simple_repeat 4 104 0 239 326 7 0 chr3 11163956 11164103 -206873055 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 3043 121 0 14 chr3 11164655 11164852 -206872306 - L1PA14 LINE L1 -237 5924 5726 2155 154 30 16 chr3 11164852 11165222 -206871936 - THE1C LTR MaLR 0 375 1 3043 121 0 14 chr3 11165222 11165461 -206871697 - L1PA14 LINE L1 -435 5726 5494 1399 142 9 4 chr3 11165461 11165684 -206871474 + L1PA14 LINE L1 5934 6159 -2 398 239 165 34 chr3 11165826 11166002 -206871156 - L2 LINE L2 -101 3212 3014 1700 194 3 7 chr3 11166005 11166314 -206870844 + AluJb SINE Alu 1 308 -4 23 0 0 0 chr3 11166324 11166347 -206870811 + AT_rich Low_complexity Low_complexity 1 23 0 1884 214 83 53 chr3 11166397 11166870 -206870288 - L1MC5 LINE L1 -302 7659 7159 991 188 21 11 chr3 11166870 11167056 -206870102 + MER5A DNA MER1_type 1 188 -1 1884 214 83 53 chr3 11167056 11167245 -206869913 - L1MC5 LINE L1 -802 7159 6977 515 271 130 10 chr3 11168221 11168587 -206868571 + LTR16A1 LTR ERVL 4 457 0 375 205 0 24 chr3 11168645 11168728 -206868430 + MLT1K LTR MaLR 170 250 -338 901 178 74 35 chr3 11168798 11169029 -206868129 + MER96B DNA MER1_type? 1 240 -177 251 180 33 0 chr3 11169031 11169092 -206868066 + MLT1K LTR MaLR 353 415 -173 211 326 34 22 chr3 11169515 11169604 -206867554 + MIR3 SINE MIR 112 201 -7 556 177 85 0 chr3 11170432 11170572 -206866586 + MER45A DNA AcHobo 1 161 -17 827 262 44 62 chr3 11171069 11171409 -206865749 - MER46C DNA MER2_type -4 334 1 227 79 26 0 chr3 11171915 11171953 -206865205 + (CA)n Simple_repeat Simple_repeat 1 39 0 858 193 133 0 chr3 11172123 11172289 -206864869 + MER5A DNA MER1_type 2 189 0 243 296 57 0 chr3 11172363 11172451 -206864707 + MLT1J1 LTR MaLR 66 158 -288 335 294 153 25 chr3 11172561 11172796 -206864362 + MLT1J LTR MaLR 237 501 -10 274 291 19 16 chr3 11172902 11173022 -206864136 - MIR SINE MIR -64 144 27 307 313 66 18 chr3 11173048 11173214 -206863944 - MER69A DNA AcHobo 0 177 4 481 342 101 17 chr3 11173549 11173786 -206863372 + MIR SINE MIR 2 258 -4 327 245 98 10 chr3 11173808 11173910 -206863248 + MIR3 SINE MIR 67 177 -31 460 191 91 18 chr3 11173955 11174065 -206863093 + L2 LINE L2 3196 3313 0 329 360 49 11 chr3 11175191 11175458 -206861700 + L2 LINE L2 2699 2975 -339 185 0 40 0 chr3 11175550 11175575 -206861583 + (TA)n Simple_repeat Simple_repeat 2 27 0 596 51 58 15 chr3 11176047 11176184 -206860974 + (TA)n Simple_repeat Simple_repeat 2 144 0 245 234 43 43 chr3 11176185 11176279 -206860879 + L2 LINE L2 3128 3221 -92 215 311 107 0 chr3 11176812 11176915 -206860243 + L2 LINE L2 3159 3272 0 633 284 32 5 chr3 11176960 11177150 -206860008 - MIR SINE MIR -10 252 58 1131 217 43 27 chr3 11178797 11179055 -206858103 + Charlie1a DNA MER1_type 1 262 -1193 23704 173 22 48 chr3 11179058 11184813 -206852345 + L1MA3 LINE L1 16 5917 -1807 1817 179 7 3 chr3 11184813 11185115 -206852043 + AluSx SINE Alu 1 303 -9 23704 173 22 48 chr3 11185115 11185135 -206852023 + L1MA3 LINE L1 5917 5936 -1788 947 117 0 22 chr3 11185135 11185315 -206851843 + (GAA)n Simple_repeat Simple_repeat 2 177 0 23704 173 22 48 chr3 11185315 11187441 -206849717 + L1MA3 LINE L1 5936 7711 -13 441 204 176 5 chr3 11187445 11187661 -206849497 + Charlie1a DNA MER1_type 245 497 -958 1928 208 44 20 chr3 11187976 11188429 -206848729 + Charlie1a DNA MER1_type 245 708 -747 599 240 39 29 chr3 11188443 11188651 -206848507 + Charlie1a DNA MER1_type 1244 1453 -2 244 167 30 30 chr3 11188745 11188811 -206848347 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 614 133 9 0 chr3 11189904 11190017 -206847141 + (TG)n Simple_repeat Simple_repeat 1 114 0 350 104 0 0 chr3 11190017 11190069 -206847089 + MLT2B1 LTR ERVL 399 517 -3 527 198 10 10 chr3 11190151 11190247 -206846911 - MER81 DNA DNA -17 97 2 24 53 0 0 chr3 11190605 11190643 -206846515 + AT_rich Low_complexity Low_complexity 1 38 0 3913 120 66 66 chr3 11191018 11191792 -206845366 + LTR1 LTR ERV1 12 785 0 353 309 148 38 chr3 11191819 11192011 -206845147 + MIR SINE MIR 5 222 -40 286 284 37 0 chr3 11192167 11192248 -206844910 - LTR33A LTR ERVL -369 154 71 1549 249 60 29 chr3 11192398 11192452 -206844706 + L1MD2 LINE L1 5565 5616 -743 2300 117 42 36 chr3 11192452 11192812 -206844346 - THE1B LTR MaLR 0 364 3 1549 249 60 29 chr3 11192812 11193341 -206843817 + L1MD2 LINE L1 5616 5962 -397 209 357 10 10 chr3 11193797 11193895 -206843263 + MIR SINE MIR 16 113 -149 189 263 113 0 chr3 11194073 11194153 -206843005 + MIR SINE MIR 79 167 -95 2957 75 95 5 chr3 11194748 11195159 -206841999 - LTR7 LTR ERV1 -2 448 1 2422 98 53 13 chr3 11195159 11195536 -206841622 - HERVH LTR ERV1 0 7713 7322 1432 124 18 5 chr3 11195534 11195751 -206841407 - HERVH LTR ERV1 -1894 5819 5600 * 4464 139 1 1 chr3 11195752 11196414 -206840744 - HERVH LTR ERV1 -2564 5149 4488 3410 111 4 6 chr3 11196416 11196919 -206840239 - HERVH LTR ERV1 -3720 3993 3492 903 142 20 0 chr3 11196909 11197057 -206840101 - HERVH LTR ERV1 -4423 3290 3140 * 20629 84 24 18 chr3 11197051 11200021 -206837137 - HERVH LTR ERV1 -4726 2987 1 2894 85 95 5 chr3 11200023 11200434 -206836724 - LTR7 LTR ERV1 -2 448 1 260 383 7 7 chr3 11200732 11200886 -206836272 + MIR SINE MIR 97 250 -12 405 290 82 29 chr3 11202098 11202305 -206834853 + MIR SINE MIR 45 262 0 240 328 39 23 chr3 11202782 11202910 -206834248 - MIR3 SINE MIR -28 180 51 254 313 0 0 chr3 11203118 11203182 -206833976 - MIR SINE MIR -91 117 54 216 0 0 0 chr3 11204514 11204538 -206832620 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2088 104 0 7 chr3 11204540 11204820 -206832338 - AluSx SINE Alu -26 286 9 1366 184 130 12 chr3 11204947 11205286 -206831872 - MLT2D LTR ERVL -34 486 8 416 301 92 60 chr3 11206961 11207210 -206829948 - L2 LINE L2 0 3272 3016 1115 265 76 18 chr3 11207257 11207850 -206829308 - L2 LINE L2 -6 3307 2682 1319 201 60 28 chr3 11207850 11208061 -206829097 + MER49 LTR ERV1 1 226 -697 1894 149 0 0 chr3 11208061 11208379 -206828779 + AluSx SINE Alu 1 318 0 1319 201 60 28 chr3 11208379 11208450 -206828708 + MER49 LTR ERV1 226 293 -630 1539 226 6 12 chr3 11208485 11208830 -206828328 + MER4D LTR ERV1 554 896 -7 403 304 122 21 chr3 11208865 11209151 -206828007 - L2 LINE L2 -660 2654 2340 1179 22 0 7 chr3 11209168 11209307 -206827851 + AluY SINE Alu 160 297 -14 504 270 11 39 chr3 11209349 11209527 -206827631 - L2 LINE L2 -1489 1825 1653 415 287 44 33 chr3 11209558 11209739 -206827419 - L2 LINE L2 -491 2823 2641 637 273 73 36 chr3 11209758 11209978 -206827180 - MIR SINE MIR -30 232 5 222 344 0 0 chr3 11209982 11210043 -206827115 - MIR3 SINE MIR -3 205 145 484 276 101 65 chr3 11210580 11210916 -206826242 + MLT1K LTR MaLR 120 530 -58 271 304 33 0 chr3 11210917 11211009 -206826149 + MIR SINE MIR 114 208 -54 690 225 128 31 chr3 11211022 11211401 -206825757 - MLT1H LTR MaLR -1 548 76 1816 182 0 3 chr3 11211569 11211882 -206825276 + AluJb SINE Alu 1 312 0 1733 233 96 20 chr3 11212935 11213006 -206824152 - MLT1F LTR MaLR 0 542 478 276 30 0 0 chr3 11213006 11213039 -206824119 + (TG)n Simple_repeat Simple_repeat 2 34 0 1733 233 96 20 chr3 11213039 11213457 -206823701 - MLT1F LTR MaLR -64 478 16 2289 107 13 0 chr3 11214839 11215138 -206822020 - AluSx SINE Alu -9 303 1 1755 201 158 26 chr3 11215189 11215735 -206821423 + MLT1E3 LTR MaLR 5 622 -2 414 314 74 26 chr3 11215798 11216027 -206821131 + MIR SINE MIR 12 251 -11 315 322 0 0 chr3 11216079 11216169 -206820989 + L1MC4 LINE L1 6614 6703 -1339 788 172 46 0 chr3 11216375 11216549 -206820609 - L1MD3 LINE L1 -10 7985 7804 217 125 62 23 chr3 11217216 11217344 -206819814 + (TA)n Simple_repeat Simple_repeat 1 133 0 4234 173 54 26 chr3 11217350 11218244 -206818914 + MER21A LTR ERV1 13 931 0 206 313 36 24 chr3 11219161 11219244 -206817914 + L2 LINE L2 3189 3272 0 2133 123 0 32 chr3 11219937 11220253 -206816905 - AluSx SINE Alu -6 306 1 281 313 23 76 chr3 11220407 11220538 -206816620 - L2 LINE L2 0 3272 3149 290 293 101 20 chr3 11220750 11220948 -206816210 - L2 LINE L2 -337 2977 2764 645 307 47 14 chr3 11221392 11221607 -206815551 - MIR SINE MIR -6 256 35 297 169 0 0 chr3 11225520 11225579 -206811579 + (CA)n Simple_repeat Simple_repeat 2 60 0 220 286 0 16 chr3 11225994 11226057 -206811101 - MIR3 SINE MIR -31 177 116 222 224 20 0 chr3 11226107 11226156 -206811002 + L2 LINE L2 3264 3313 0 235 337 105 0 chr3 11226237 11226323 -206810835 + MIR SINE MIR 34 128 -80 1756 182 3 25 chr3 11226835 11227153 -206810005 + AluJb SINE Alu 1 311 -1 189 0 0 0 chr3 11227987 11228008 -206809150 + (T)n Simple_repeat Simple_repeat 1 21 0 546 330 5 11 chr3 11228110 11228298 -206808860 + MER5A DNA MER1_type 1 187 -2 2679 42 0 0 chr3 11231049 11231356 -206805802 + AluY SINE Alu 1 307 -4 312 319 128 84 chr3 11232438 11232773 -206804385 - L2 LINE L2 -5 3267 2918 377 269 246 0 chr3 11232850 11233017 -206804141 - L2 LINE L2 -528 2786 2579 201 74 0 0 chr3 11233259 11233286 -206803872 + (TG)n Simple_repeat Simple_repeat 2 28 0 491 331 18 0 chr3 11233952 11234115 -206803043 + MIR SINE MIR 1 166 -96 184 386 30 20 chr3 11234198 11234299 -206802859 - MER5A DNA MER1_type -29 160 59 210 357 24 32 chr3 11234341 11234467 -206802691 - MIR3 SINE MIR -78 130 6 504 48 0 0 chr3 11234963 11235026 -206802132 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 223 395 8 15 chr3 11235098 11235232 -206801926 + L3 LINE CR1 430 562 -1015 2339 174 19 5 chr3 11235783 11236203 -206800955 - MSTA LTR MaLR -2 426 1 196 350 39 19 chr3 11236309 11236412 -206800746 + L3 LINE CR1 1097 1201 -376 548 375 8 8 chr3 11236519 11236764 -206800394 + MIR SINE MIR 18 262 0 267 357 23 16 chr3 11236770 11236899 -206800259 + L3 LINE CR1 1417 1546 -31 4279 166 44 9 chr3 11237415 11238170 -206798988 + LTR39 LTR ERV1 1 781 -2 335 169 0 146 chr3 11238213 11238302 -206798856 + MER61E LTR ERV1 36 111 -458 * 402 161 0 25 chr3 11238282 11238363 -206798795 + LTR25 LTR ERV1 215 293 -501 845 184 103 49 chr3 11238370 11238593 -206798565 + LTR25 LTR ERV1 230 464 -330 296 100 0 20 chr3 11238663 11238713 -206798445 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 * 435 152 0 0 chr3 11238709 11238788 -206798370 + C-rich Low_complexity Low_complexity 3 81 0 2093 154 0 0 chr3 11238812 11239124 -206798034 - AluJb SINE Alu 0 312 1 590 224 73 54 chr3 11239458 11239663 -206797495 + MER63A DNA MER1_type 1 209 -1 221 231 19 0 chr3 11239789 11239841 -206797317 - MIR SINE MIR -108 154 102 592 360 77 26 chr3 11239843 11240310 -206796848 + LTR16C LTR ERVL 1 491 0 375 348 14 29 chr3 11240937 11241075 -206796083 + L2 LINE L2 3137 3272 0 815 268 45 0 chr3 11241217 11241441 -206795717 + MIR SINE MIR 2 235 -27 1071 191 50 0 chr3 11241441 11241661 -206795497 + MER46A DNA MER2_type 1 231 -5 194 313 134 42 chr3 11241838 11242055 -206795103 + L2 LINE L2 2843 3079 -193 765 290 136 37 chr3 11242398 11242759 -206794399 + L2 LINE L2 2715 3149 -164 2441 143 23 34 chr3 11242759 11243198 -206793960 - Tigger2a DNA MER2_type 0 434 1 765 290 136 37 chr3 11243198 11243381 -206793777 + L2 LINE L2 3149 3313 0 498 258 10 78 chr3 11243657 11243867 -206793291 + MIR SINE MIR 25 218 -44 1590 266 58 40 chr3 11245453 11246035 -206791123 - MLT1E LTR MaLR 0 593 1 377 256 241 0 chr3 11246120 11246257 -206790901 + MIR SINE MIR 2 171 -91 495 275 92 59 chr3 11246368 11246606 -206790552 + HAL1 LINE L1 2030 2259 -248 1929 173 3 0 chr3 11246606 11246912 -206790246 - AluSx SINE Alu -3 309 3 495 275 92 59 chr3 11246912 11247131 -206790027 + HAL1 LINE L1 2259 2502 -5 367 302 106 55 chr3 11247333 11247588 -206789570 - L1ME LINE L1 -298 5823 5556 297 317 67 0 chr3 11248009 11248113 -206789045 - MER91C DNA MER1_type -29 111 1 240 333 87 40 chr3 11249078 11249204 -206787954 - MIR SINE MIR -111 151 20 338 265 91 8 chr3 11249406 11249538 -206787620 - LTR16C LTR ERVL -4 487 345 803 311 115 21 chr3 11249922 11250434 -206786724 - MLT1K LTR MaLR -15 573 14 1458 235 25 38 chr3 11251003 11251403 -206785755 + MSTD LTR MaLR 1 395 -1 1676 230 20 49 chr3 11251406 11251651 -206785507 + MSTD-int LTR MaLR 2 226 -1509 2130 146 0 0 chr3 11251651 11251952 -206785206 + AluSx SINE Alu 1 301 -11 1676 230 20 49 chr3 11251952 11252215 -206784943 + MSTD-int LTR MaLR 226 495 -1240 4722 160 17 40 chr3 11252215 11252560 -206784598 + MER49 LTR ERV1 1 352 -571 920 28 0 0 chr3 11252560 11252669 -206784489 - L1PA5 LINE L1 0 6154 6046 4722 160 17 40 chr3 11252669 11253256 -206783902 + MER49 LTR ERV1 352 912 -11 4260 244 39 41 chr3 11253263 11254509 -206782649 + MSTD-int LTR MaLR 492 1735 0 986 200 94 28 chr3 11254517 11254827 -206782331 + MSTD LTR MaLR 10 396 0 320 400 8 0 chr3 11255420 11255540 -206781618 + L2 LINE L2 3148 3268 -4 345 253 6 114 chr3 11255822 11255988 -206781170 + MIR SINE MIR 107 254 -8 943 227 114 70 chr3 11256236 11256667 -206780491 + LTR16A1 LTR ERVL 5 454 -3 199 245 118 29 chr3 11256798 11256900 -206780258 - MIR SINE MIR -56 206 96 1718 164 17 24 chr3 11256944 11257236 -206779922 - AluJb SINE Alu -22 290 1 26 30 0 0 chr3 11257987 11258020 -206779138 + AT_rich Low_complexity Low_complexity 1 33 0 215 182 13 0 chr3 11258304 11258381 -206778777 + (TA)n Simple_repeat Simple_repeat 2 79 0 4594 161 21 35 chr3 11259351 11260283 -206776875 + L1MA7 LINE L1 5106 6016 -275 2064 109 25 0 chr3 11260283 11260567 -206776591 + AluSx SINE Alu 1 291 -21 4594 161 21 35 chr3 11260567 11260840 -206776318 + L1MA7 LINE L1 6016 6291 0 1658 207 22 3 chr3 11261162 11261541 -206775617 - MLT2D LTR ERVL -19 445 9 247 91 0 0 chr3 11261677 11261710 -206775448 - U2 snRNA snRNA -155 33 1 650 281 23 0 chr3 11261989 11262210 -206774948 + LTR16C LTR ERVL 266 491 0 351 44 0 0 chr3 11262619 11262664 -206774494 + (TG)n Simple_repeat Simple_repeat 2 46 0 209 218 253 58 chr3 11262669 11262756 -206774402 - L2 LINE L2 0 3313 3210 874 226 55 79 chr3 11262760 11263140 -206774018 - L2 LINE L2 -264 3049 2673 2568 89 92 10 chr3 11263162 11263576 -206773582 - LTR7 LTR ERV1 -2 448 1 213 311 19 19 chr3 11263984 11264090 -206773068 + MIR SINE MIR 43 148 -60 188 224 41 0 chr3 11264512 11264561 -206772597 - L2 LINE L2 -255 3058 3008 625 268 66 66 chr3 11264793 11265040 -206772118 + LTR16C LTR ERVL 100 349 -142 1768 191 43 5 chr3 11265040 11265412 -206771746 - MLT1B LTR MaLR 0 390 5 625 268 66 66 chr3 11265412 11265556 -206771602 + LTR16C LTR ERVL 348 491 0 294 369 31 15 chr3 11266376 11266506 -206770652 + MIR SINE MIR 50 181 -81 189 227 0 0 chr3 11267367 11267411 -206769747 + MER5A DNA MER1_type 7 50 -139 838 171 94 22 chr3 11267425 11267606 -206769552 - MIR SINE MIR -27 235 42 333 246 26 99 chr3 11267646 11267729 -206769429 + L1MC4a LINE L1 5814 5902 -1906 1943 130 33 7 chr3 11267729 11268028 -206769130 + AluSg SINE Alu 1 307 -3 333 246 26 99 chr3 11268028 11268135 -206769023 + L1MC4a LINE L1 5902 5990 -1818 188 286 0 0 chr3 11268334 11268383 -206768775 + MER5A DNA MER1_type 138 186 -3 594 227 0 16 chr3 11268946 11269074 -206768084 - MER3 DNA MER1_type -82 127 2 340 295 32 74 chr3 11269352 11269451 -206767707 + HAL1 LINE L1 1632 1721 -786 1132 272 96 5 chr3 11269451 11269826 -206767332 + MLT1I LTR MaLR 1 409 0 340 295 32 74 chr3 11269826 11269916 -206767242 + HAL1 LINE L1 1721 1813 -694 31 26 0 0 chr3 11270054 11270092 -206767066 + AT_rich Low_complexity Low_complexity 1 38 0 1857 189 115 22 chr3 11270137 11270175 -206766983 - MLT2B1 LTR ERVL 0 520 487 204 40 0 0 chr3 11270175 11270200 -206766958 + (CA)n Simple_repeat Simple_repeat 2 26 0 1857 189 115 22 chr3 11270200 11270578 -206766580 - MLT2B1 LTR ERVL -33 487 65 2272 125 0 0 chr3 11270588 11270900 -206766258 - AluSx SINE Alu 0 312 1 772 130 0 0 chr3 11270900 11271008 -206766150 - AluSq/x SINE Alu -177 135 28 328 164 0 16 chr3 11271010 11271071 -206766087 - MLT2B1 LTR ERVL -351 63 4 23 33 0 0 chr3 11271547 11271577 -206765581 + AT_rich Low_complexity Low_complexity 1 30 0 2139 107 3 10 chr3 11271692 11271991 -206765167 - AluSq SINE Alu -14 299 3 652 319 21 21 chr3 11272097 11272332 -206764826 + MIR SINE MIR 22 256 -6 298 418 0 0 chr3 11272349 11272452 -206764706 - L2 LINE L2 -33 3239 3137 313 263 30 0 chr3 11273737 11273836 -206763322 + MLT1K LTR MaLR 462 563 -25 265 256 22 61 chr3 11275183 11275363 -206761795 + (TATATG)n Simple_repeat Simple_repeat 6 178 0 208 358 9 46 chr3 11275490 11275599 -206761559 + MIR3 SINE MIR 83 187 -21 2188 115 3 0 chr3 11275675 11275980 -206761178 + AluSc SINE Alu 1 306 -3 629 308 110 11 chr3 11277051 11277495 -206759663 - LTR33A LTR ERVL -2 521 16 349 178 56 11 chr3 11278391 11278481 -206758677 - MER53 DNA DNA -1 188 95 825 221 35 0 chr3 11278619 11278791 -206758367 - MER58A DNA MER1_type 0 224 47 1035 176 13 4 chr3 11278861 11279088 -206758070 + L1MB3 LINE L1 5271 5499 -679 912 191 5 0 chr3 11279088 11279284 -206757874 + L1MA4 LINE L1 6096 6295 -5 3385 184 15 32 chr3 11279303 11280015 -206757143 + L1MB3 LINE L1 5476 6175 -8 180 325 48 0 chr3 11280383 11280466 -206756692 - L2 LINE L2 -52 3220 3134 203 178 0 22 chr3 11281090 11281135 -206756023 + (CA)n Simple_repeat Simple_repeat 2 45 0 200 320 58 10 chr3 11281818 11281921 -206755237 + MIR SINE MIR 99 206 -56 27 87 0 0 chr3 11281943 11282012 -206755146 + AT_rich Low_complexity Low_complexity 1 69 0 181 339 10 128 chr3 11282028 11282223 -206754935 + L2 LINE L2 3015 3186 -86 427 318 103 70 chr3 11282486 11283076 -206754082 + L2 LINE L2 2658 3272 0 213 39 0 0 chr3 11283564 11283590 -206753568 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 426 96 0 0 chr3 11283589 11283662 -206753496 + (TA)n Simple_repeat Simple_repeat 2 74 0 265 303 143 8 chr3 11284153 11284272 -206752886 - L2 LINE L2 -1 3271 3137 256 283 0 17 chr3 11285064 11285124 -206752034 - L2 LINE L2 -14 3258 3200 205 222 0 22 chr3 11286008 11286053 -206751105 - MIR SINE MIR -56 152 109 196 176 20 78 chr3 11286059 11286110 -206751048 - L2 LINE L2 -9 3304 3257 259 381 90 13 chr3 11286757 11286912 -206750246 + MIR SINE MIR 19 185 -77 1888 86 0 4 chr3 11286974 11287242 -206749916 + L1PA13 LINE L1 5894 6160 -3 396 295 172 37 chr3 11287267 11287727 -206749431 - MLT1G1 LTR MaLR -50 526 26 2106 141 30 28 chr3 11287800 11288163 -206748995 - THE1B LTR MaLR 0 364 1 681 294 37 60 chr3 11288170 11288469 -206748689 + L2 LINE L2 2836 3127 -186 241 254 0 36 chr3 11288589 11288644 -206748514 + L2 LINE L2 3136 3188 -84 200 250 0 0 chr3 11288857 11288897 -206748261 + (TA)n Simple_repeat Simple_repeat 1 40 0 191 268 205 16 chr3 11289301 11289428 -206747730 - MIR SINE MIR -1 261 111 202 308 46 0 chr3 11289438 11289503 -206747655 + L2 LINE L2 3238 3305 -8 286 253 23 11 chr3 11290784 11290871 -206746287 - MIR SINE MIR -99 163 76 256 184 20 0 chr3 11291005 11291054 -206746104 - L2 LINE L2 -6 3307 3258 435 92 0 0 chr3 11291380 11291445 -206745713 + (TC)n Simple_repeat Simple_repeat 2 66 0 194 207 17 0 chr3 11291444 11291502 -206745656 + (TA)n Simple_repeat Simple_repeat 1 59 0 * 843 233 48 29 chr3 11291782 11291988 -206745170 + MER63A DNA MER1_type 1 210 0 4098 211 30 28 chr3 11292436 11294926 -206742232 + L1MA4 LINE L1 380 3046 -3282 9108 166 25 18 chr3 11294934 11296736 -206740422 + L1MA4 LINE L1 3690 5498 -984 189 0 0 0 chr3 11296736 11296757 -206740401 + (TAA)n Simple_repeat Simple_repeat 2 22 0 9108 166 25 18 chr3 11296757 11297187 -206739971 + L1MA4 LINE L1 5498 5923 -559 232 220 22 22 chr3 11297223 11297314 -206739844 + L1MC4 LINE L1 6616 6706 -1336 2388 180 95 15 chr3 11297363 11297891 -206739267 + L1MA4 LINE L1 5909 6478 -4 695 187 84 0 chr3 11298139 11298236 -206738922 + MER104 DNA Tc2 1 88 -1810 747 50 10 0 chr3 11298236 11298335 -206738823 - L1PA4 LINE L1 -6 6149 6050 695 187 84 0 chr3 11298335 11298403 -206738755 + MER104 DNA Tc2 88 180 0 255 79 0 0 chr3 11298629 11298667 -206738491 + (CA)n Simple_repeat Simple_repeat 1 38 0 202 276 0 17 chr3 11298770 11298828 -206738330 + CT-rich Low_complexity Low_complexity 6 62 0 334 155 127 28 chr3 11298971 11299042 -206738116 + THE1B LTR MaLR 1 78 -286 255 79 0 0 chr3 11300109 11300147 -206737011 + (CA)n Simple_repeat Simple_repeat 1 38 0 202 276 0 17 chr3 11300250 11300308 -206736850 + CT-rich Low_complexity Low_complexity 6 62 0 1853 158 61 28 chr3 11300451 11300758 -206736400 + THE1C LTR MaLR 1 323 -52 2589 118 3 0 chr3 11300758 11301121 -206736037 - THE1B LTR MaLR 0 364 1 1853 158 61 28 chr3 11301121 11301175 -206735983 + THE1C LTR MaLR 323 374 -1 956 312 88 33 chr3 11301252 11301762 -206735396 - L3 LINE CR1 -74 1503 966 2087 222 35 48 chr3 11303130 11303652 -206733506 + MLT2B3 LTR ERVL 1 515 -39 323 199 39 19 chr3 11303678 11303717 -206733441 + (TA)n Simple_repeat Simple_repeat 2 39 -121 2326 88 0 3 chr3 11303717 11304012 -206733146 + AluSp SINE Alu 1 294 -19 323 199 39 19 chr3 11304012 11304128 -206733030 + (TA)n Simple_repeat Simple_repeat 39 160 0 26 0 0 0 chr3 11304128 11304154 -206733004 + AT_rich Low_complexity Low_complexity 1 26 0 344 156 33 39 chr3 11304166 11304346 -206732812 + (TA)n Simple_repeat Simple_repeat 2 180 0 508 101 58 18 chr3 11304367 11304651 -206732507 + (TA)n Simple_repeat Simple_repeat 1 295 0 330 235 59 12 chr3 11304657 11304742 -206732416 + L1MC4 LINE L1 6614 6702 -1340 203 188 21 0 chr3 11304743 11304791 -206732367 + (TA)n Simple_repeat Simple_repeat 1 49 0 241 270 0 11 chr3 11304797 11304886 -206732272 + L1MC4 LINE L1 6614 6701 -1341 229 142 57 19 chr3 11304887 11304993 -206732165 + (TA)n Simple_repeat Simple_repeat 1 110 0 337 258 22 0 chr3 11305021 11305110 -206732048 - L1MC4 LINE L1 -1337 6705 6615 310 286 0 22 chr3 11305030 11305121 -206732037 + L1MC4 LINE L1 6615 6703 -1339 * 562 201 6 6 chr3 11305121 11305300 -206731858 + (TA)n Simple_repeat Simple_repeat 2 180 0 389 161 0 0 chr3 11305317 11305379 -206731779 + MSTD LTR MaLR 335 396 0 203 303 7 123 chr3 11305482 11305637 -206731521 + MER5A DNA MER1_type 4 140 -49 257 153 0 17 chr3 11306898 11306957 -206730201 + (TAGG)n Simple_repeat Simple_repeat 1 58 0 992 149 7 7 chr3 11307043 11307197 -206729961 + AluSq SINE Alu 140 293 -20 360 241 92 35 chr3 11307696 11307837 -206729321 + MIR3 SINE MIR 60 208 0 943 130 0 29 chr3 11308471 11308755 -206728403 + (GGAA)n Simple_repeat Simple_repeat 1 275 0 8739 20 0 2 chr3 11359067 11360772 -206676386 - L1PA3 LINE L1 -150 6005 4305 * 8786 31 4 0 chr3 11360769 11361874 -206675284 + L1PA3 LINE L1 3226 4334 -1812 859 228 6 6 chr3 11361999 11362170 -206674988 - MER5A DNA MER1_type -18 171 1 825 155 33 77 chr3 11362209 11362390 -206674768 - MER58A DNA MER1_type -4 220 48 228 316 38 30 chr3 11362434 11362567 -206674591 + L2 LINE L2 2930 3063 -209 277 293 67 71 chr3 11362587 11362826 -206674332 - L2 LINE L2 0 3313 3076 230 359 104 0 chr3 11362896 11363002 -206674156 + L2 LINE L2 3182 3298 -15 979 260 55 68 chr3 11363113 11363567 -206673591 - L2 LINE L2 0 3313 2866 1218 286 37 45 chr3 11363692 11364205 -206672953 + MLT1J LTR MaLR 3 511 0 267 235 66 52 chr3 11364404 11364540 -206672618 + LTR33 LTR ERVL 381 518 -3 206 71 0 71 chr3 11365588 11365630 -206671528 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 228 349 124 24 chr3 11365714 11365883 -206671275 + MIR SINE MIR 20 205 -57 2490 173 143 15 chr3 11365911 11366455 -206670703 - MER90 LTR ERV1 0 614 1 327 85 0 0 chr3 11366521 11366568 -206670590 + (TG)n Simple_repeat Simple_repeat 2 48 0 294 330 62 0 chr3 11367208 11367320 -206669838 - MIR3 SINE MIR -17 191 73 270 304 0 0 chr3 11367423 11367502 -206669656 + MIR SINE MIR 172 250 -12 207 193 0 20 chr3 11367777 11367828 -206669330 - MIR SINE MIR -62 146 105 30 83 0 0 chr3 11368752 11368824 -206668334 + AT_rich Low_complexity Low_complexity 1 72 0 2003 107 28 3 chr3 11369196 11369523 -206667635 - SVA Other Other -339 1047 713 219 69 0 0 chr3 11370092 11370121 -206667037 + (A)n Simple_repeat Simple_repeat 1 29 0 792 304 69 24 chr3 11370139 11370517 -206666641 + LTR67 LTR ERVL 7 401 -156 21 0 0 0 chr3 11370754 11370775 -206666383 + AT_rich Low_complexity Low_complexity 1 21 0 2789 217 44 26 chr3 11372052 11372836 -206664322 + L1ME1 LINE L1 5236 6031 -135 610 211 124 5 chr3 11373478 11373641 -206663517 - MER5A DNA MER1_type -1 188 4 291 216 201 43 chr3 11373950 11374089 -206663069 + MLT1H LTR MaLR 2 162 -387 1937 156 58 22 chr3 11374474 11374834 -206662324 + THE1C LTR MaLR 1 373 -2 1210 322 173 20 chr3 11375535 11376550 -206660608 - L2 LINE L2 -339 2975 1805 236 333 28 0 chr3 11376969 11377041 -206660117 + L2 LINE L2 3240 3313 0 1035 271 0 5 chr3 11378467 11378688 -206658470 - MER58A DNA MER1_type -4 220 1 658 287 60 32 chr3 11378852 11379058 -206658100 + L2 LINE L2 2788 2998 -315 2413 84 0 7 chr3 11379058 11379366 -206657792 - AluY SINE Alu -5 306 1 658 287 60 32 chr3 11379366 11379417 -206657741 + L2 LINE L2 2998 3046 -267 394 233 233 6 chr3 11379428 11379600 -206657558 - LTR33A LTR ERVL -13 510 300 667 293 116 0 chr3 11380000 11380242 -206656916 + L2 LINE L2 3044 3313 0 2134 198 8 3 chr3 11380552 11380935 -206656223 - MLT1B LTR MaLR 0 390 6 459 0 0 0 chr3 11381849 11381900 -206655258 + (CA)n Simple_repeat Simple_repeat 1 51 0 554 205 43 109 chr3 11381959 11382169 -206654989 - MIR3 SINE MIR -9 199 4 299 339 24 8 chr3 11382263 11382387 -206654771 + MIR SINE MIR 18 143 -65 1465 199 19 69 chr3 11382612 11382989 -206654169 - MLT2D LTR ERVL 0 414 57 389 20 0 20 chr3 11383813 11383864 -206653294 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 403 296 124 70 chr3 11383875 11384344 -206652814 - L2 LINE L2 -2 3311 2818 6652 166 20 20 chr3 11384884 11387168 -206649990 - L1MA9 LINE L1 0 6312 4018 542 320 30 56 chr3 11387224 11387493 -206649665 - L2 LINE L2 -47 3225 2964 415 229 147 0 chr3 11387533 11387642 -206649516 + MER20 DNA MER1_type 1 125 -94 * 846 180 42 0 chr3 11387639 11387806 -206649352 + MER20 DNA MER1_type 46 219 0 945 176 42 185 chr3 11388049 11388504 -206648654 - MLT1B LTR MaLR 0 390 1 305 320 23 100 chr3 11388633 11388892 -206648266 + L2 LINE L2 2991 3229 -43 413 320 0 31 chr3 11389622 11389750 -206647408 - MER5A DNA MER1_type 0 189 66 317 257 40 10 chr3 11389900 11390001 -206647157 - MER5A DNA MER1_type -77 112 9 449 242 97 32 chr3 11390795 11390919 -206646239 + MIR SINE MIR 1 132 -130 359 315 130 9 chr3 11391814 11392030 -206645128 + MIR SINE MIR 15 256 -6 296 308 150 28 chr3 11392709 11392956 -206644202 + L2 LINE L2 2986 3262 -10 334 287 93 9 chr3 11393339 11393447 -206643711 - L3 LINE CR1 -2 1575 1459 226 189 0 0 chr3 11393497 11393534 -206643624 - L2 LINE L2 -15 3298 3262 188 258 17 166 chr3 11393585 11393688 -206643470 - L3 LINE CR1 -108 1469 1352 864 158 0 0 chr3 11393688 11393815 -206643343 - FLAM_C SINE Alu -6 127 1 188 258 17 166 chr3 11393815 11394006 -206643152 - L3 LINE CR1 -225 1352 1219 184 147 44 132 chr3 11394456 11394524 -206642634 + L2 LINE L2 3211 3272 0 502 296 102 0 chr3 11394794 11394970 -206642188 + MER117 DNA MER1_type 4 197 0 183 326 180 22 chr3 11395001 11395090 -206642068 - MIR3 SINE MIR -103 105 3 706 216 74 17 chr3 11395806 11395974 -206641184 + MIR SINE MIR 77 257 -5 853 126 69 25 chr3 11395974 11396102 -206641056 - L1MA8 LINE L1 -4 6287 6149 291 28 0 0 chr3 11396102 11396138 -206641020 + (TG)n Simple_repeat Simple_repeat 1 36 0 853 126 69 25 chr3 11396138 11396168 -206640990 - L1MA8 LINE L1 -142 6149 6122 1607 201 68 52 chr3 11397615 11397983 -206639175 + MLT1A2 LTR MaLR 1 374 0 21 0 0 0 chr3 11398205 11398226 -206638932 + AT_rich Low_complexity Low_complexity 1 21 0 1221 266 71 63 chr3 11398822 11399534 -206637624 + L2 LINE L2 2464 3186 -127 2377 97 0 0 chr3 11399534 11399834 -206637324 + AluSc SINE Alu 1 300 -9 1221 266 71 63 chr3 11399834 11399962 -206637196 + L2 LINE L2 3186 3312 -1 1230 206 0 0 chr3 11400037 11400255 -206636903 + AluJo SINE Alu 1 218 -94 28 29 0 0 chr3 11400397 11400432 -206636726 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr3 11400842 11400872 -206636286 + AT_rich Low_complexity Low_complexity 1 30 0 6408 138 14 33 chr3 11402730 11404071 -206633087 - L1MA5A LINE L1 -5 6292 4960 3066 259 84 64 chr3 11404078 11404968 -206632190 + L1ME1 LINE L1 752 1623 -4592 201 39 0 0 chr3 11404968 11404994 -206632164 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 3066 259 84 64 chr3 11404994 11405461 -206631697 + L1ME1 LINE L1 1623 2079 -4136 2710 155 31 18 chr3 11405461 11405912 -206631246 - MSTB2 LTR MaLR 0 457 1 3066 259 84 64 chr3 11405912 11406529 -206630629 + L1ME1 LINE L1 2079 2730 -3485 286 293 0 0 chr3 11406566 11406648 -206630510 - L1ME1 LINE L1 -1200 5015 4934 2740 246 48 18 chr3 11406649 11407768 -206629390 + L1ME1 LINE L1 5039 6347 -56 186 206 0 0 chr3 11407804 11407872 -206629286 + A-rich Low_complexity Low_complexity 1 68 0 337 305 46 38 chr3 11408346 11408477 -206628681 - MLT1K LTR MaLR -285 303 172 2298 173 6 3 chr3 11408616 11408980 -206628178 + MLT1A1 LTR MaLR 1 365 0 2732 132 125 2 chr3 11409032 11409465 -206627693 - LTR12 LTR ERV1 -228 486 1 1155 230 90 69 chr3 11409771 11410237 -206626921 + MLT1K LTR MaLR 1 476 0 257 253 120 41 chr3 11410665 11410810 -206626348 + MIR SINE MIR 17 172 -64 * 273 283 120 61 chr3 11410806 11410994 -206626164 + MIR3 SINE MIR 15 202 -60 220 269 15 15 chr3 11411208 11411275 -206625883 + MIR SINE MIR 34 100 -162 334 327 42 24 chr3 11411383 11411548 -206625610 - MIR SINE MIR -64 198 31 625 259 150 9 chr3 11411634 11411854 -206625304 - MIR SINE MIR -10 252 2 256 169 17 34 chr3 11412211 11412270 -206624888 + CT-rich Low_complexity Low_complexity 1 58 0 216 287 139 25 chr3 11412533 11412655 -206624503 - MIR SINE MIR -70 192 57 512 199 125 0 chr3 11412904 11413024 -206624134 + MIR SINE MIR 34 166 -62 688 269 30 15 chr3 11413112 11413313 -206623845 - MIR SINE MIR -55 207 4 1008 160 43 5 chr3 11413328 11413515 -206623643 - MER20 DNA MER1_type 0 219 26 583 257 0 27 chr3 11413814 11413962 -206623196 + MER104 DNA Tc2 30 173 -7 423 233 275 0 chr3 11414094 11414214 -206622944 - MER91A DNA MER1_type -43 153 1 204 40 0 0 chr3 11414439 11414464 -206622694 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 762 235 37 0 chr3 11415115 11415277 -206621881 + MER58A DNA MER1_type 1 168 0 2194 139 72 31 chr3 11415280 11415768 -206621390 + MLT2A2 LTR ERVL 22 554 0 294 217 17 0 chr3 11415768 11415828 -206621330 + MER58A DNA MER1_type 164 224 0 2155 114 0 26 chr3 11416092 11416400 -206620758 + AluSx SINE Alu 1 300 -12 1595 213 91 28 chr3 11416443 11416922 -206620236 + MER41E LTR ERV1 7 512 0 1058 272 55 35 chr3 11417112 11417546 -206619612 - LTR16C LTR ERVL -5 486 44 633 322 74 27 chr3 11418263 11418670 -206618488 + MLT1K LTR MaLR 21 446 -142 535 316 105 39 chr3 11418810 11419142 -206618016 + L3 LINE CR1 911 1264 -313 371 82 14 0 chr3 11419645 11419708 -206617450 + Alu SINE Alu 243 297 -5 616 263 6 0 chr3 11419831 11419991 -206617167 - MER117 DNA MER1_type -36 161 1 2564 112 5 8 chr3 11420566 11420941 -206616217 - THE1C LTR MaLR 0 375 2 230 282 26 84 chr3 11421476 11421703 -206615455 - L2 LINE L2 0 3313 3100 296 24 24 0 chr3 11421756 11421797 -206615361 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 249 289 40 40 chr3 11422295 11422447 -206614711 + MLT1I LTR MaLR 83 234 -175 21 57 0 0 chr3 11422783 11422818 -206614340 + AT_rich Low_complexity Low_complexity 1 35 0 203 194 0 0 chr3 11423217 11423253 -206613905 + A-rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr3 11423600 11423626 -206613532 + AT_rich Low_complexity Low_complexity 1 26 0 202 194 28 0 chr3 11423800 11423872 -206613286 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 265 305 94 16 chr3 11428478 11428606 -206608552 + MIR3 SINE MIR 5 142 -66 577 235 148 31 chr3 11428852 11429048 -206608110 + MER58A DNA MER1_type 1 219 -5 214 369 45 36 chr3 11430520 11430631 -206606527 + L2 LINE L2 3153 3264 -8 277 271 187 19 chr3 11430686 11430793 -206606365 + L2 LINE L2 3147 3271 -1 264 274 0 0 chr3 11430872 11430945 -206606213 - MER58A DNA MER1_type -1 223 151 31117 108 14 28 chr3 11430945 11437158 -206600000 + L1PA7 LINE L1 26 6151 -3 465 290 43 32 chr3 11437158 11437226 -206599932 - MER58A DNA MER1_type -2232 188 122 3078 69 8 78 chr3 11437226 11437703 -206599455 + MLT2A1 LTR ERVL 1 444 0 465 290 43 32 chr3 11437703 11437820 -206599338 - MER58A DNA MER1_type -2298 122 1 228 111 0 0 chr3 11438068 11438104 -206599054 + (CA)n Simple_repeat Simple_repeat 1 36 0 1181 269 100 36 chr3 11438227 11439026 -206598132 + L1ME3A LINE L1 5291 6140 -30 868 247 119 39 chr3 11439187 11439624 -206597534 + MLT1G LTR MaLR 119 590 0 208 355 116 14 chr3 11439661 11439799 -206597359 - MIR SINE MIR -90 172 21 1623 211 14 14 chr3 11439808 11440173 -206596985 + MLT1A1 LTR MaLR 1 365 0 566 144 0 0 chr3 11440174 11440271 -206596887 + MLT1A1-int LTR MaLR 1 97 -1638 * 936 168 67 5 chr3 11440267 11440475 -206596683 + MLT-int LTR MaLR 1515 1735 0 192 361 107 8 chr3 11442129 11442251 -206594907 - L2 LINE L2 -47 3225 3092 524 242 97 98 chr3 11442309 11442676 -206594482 + MLT1J1 LTR MaLR 66 427 -19 270 0 0 0 chr3 11442715 11442745 -206594413 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 230 313 30 0 chr3 11442745 11442812 -206594346 - L2 LINE L2 -2 3311 3243 512 330 22 16 chr3 11442908 11443090 -206594068 - L2 LINE L2 -252 3061 2879 212 333 127 0 chr3 11444092 11444218 -206592940 + MIR3 SINE MIR 3 144 -64 1315 129 55 0 chr3 11444256 11444473 -206592685 + MER30 DNA MER1_type 2 230 0 1766 164 56 43 chr3 11444506 11444858 -206592300 + MLT2D LTR ERVL 1 347 -67 1679 192 75 21 chr3 11444858 11445233 -206591925 + MSTD LTR MaLR 1 395 -1 354 98 0 0 chr3 11445233 11445284 -206591874 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1766 164 56 43 chr3 11445284 11445326 -206591832 + MLT2D LTR ERVL 346 401 -13 265 326 0 11 chr3 11445335 11445424 -206591734 - L2 LINE L2 -27 3286 3199 2587 213 19 57 chr3 11445435 11446064 -206591094 + MER77 LTR ERV1 1 605 0 273 297 27 27 chr3 11446065 11446176 -206590982 - L2 LINE L2 -10 3303 3193 358 332 41 71 chr3 11446354 11446550 -206590608 + L3 LINE CR1 1020 1209 -368 1078 186 34 0 chr3 11446559 11446763 -206590395 + MER20 DNA MER1_type 3 213 -6 181 414 36 0 chr3 11446805 11446916 -206590242 + L3 LINE CR1 1392 1506 -71 22 56 0 0 chr3 11447161 11447197 -206589961 + AT_rich Low_complexity Low_complexity 1 36 0 544 255 28 49 chr3 11447289 11447351 -206589807 - MIR SINE MIR -61 147 85 1312 183 137 105 chr3 11447351 11447855 -206589303 - MLT2B1 LTR ERVL 0 520 1 544 255 28 49 chr3 11447855 11447976 -206589182 - MIR SINE MIR -123 85 9 504 299 148 2 chr3 11448260 11448678 -206588480 - LTR33 LTR ERVL -2 519 41 514 328 107 10 chr3 11448800 11449279 -206587879 + L1ME4a LINE L1 5503 6027 -94 10998 25 0 0 chr3 11449554 11451610 -206585548 + L1PA3 LINE L1 4097 6152 -3 25 0 0 0 chr3 11451611 11451636 -206585522 + AT_rich Low_complexity Low_complexity 1 25 0 241 287 128 0 chr3 11452017 11452111 -206585047 - MIR SINE MIR -63 145 40 2231 160 68 2 chr3 11452180 11452580 -206584578 + MSTB LTR MaLR 1 426 0 803 191 42 18 chr3 11453180 11453348 -206583810 - FRAM SINE Alu -5 171 1 4906 149 13 11 chr3 11453444 11454476 -206582682 + L1PB2 LINE L1 5118 6151 0 396 200 105 0 chr3 11454730 11454825 -206582333 + Tigger3(Golem) DNA MER2_type 3 107 -2922 269 116 0 0 chr3 11454828 11454871 -206582287 + Tigger3(Golem) DNA MER2_type 2287 2329 -700 2865 100 7 7 chr3 11454873 11455283 -206581875 + L1PB3 LINE L1 5745 6154 0 34 55 0 0 chr3 11455798 11455853 -206581305 + AT_rich Low_complexity Low_complexity 1 55 0 3571 111 65 2 chr3 11455853 11456464 -206580694 + Tigger3(Golem) DNA MER2_type 2378 3027 -2 487 54 68 0 chr3 11456730 11456804 -206580354 + L1PA13 LINE L1 6084 6162 -1 574 296 15 0 chr3 11457075 11457207 -206579951 - L2 LINE L2 0 3272 3139 991 283 46 11 chr3 11457374 11457741 -206579417 + LTR16A LTR ERVL 57 436 -14 485 365 37 10 chr3 11457750 11458084 -206579074 - L2 LINE L2 -292 3021 2681 185 365 19 9 chr3 11458250 11458357 -206578801 - MIR SINE MIR -82 180 73 277 83 317 0 chr3 11458357 11458417 -206578741 + MADE1 DNA Mariner 2 80 0 297 0 0 0 chr3 11459293 11459326 -206577832 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1541 269 74 20 chr3 11459779 11460374 -206576784 - L1ME3A LINE L1 -27 6143 5517 2959 253 89 45 chr3 11460406 11462064 -206575094 - HAL1 LINE L1 -4 2503 773 2186 61 0 4 chr3 11462535 11462797 -206574361 + AluSq SINE Alu 39 299 -14 630 248 41 64 chr3 11463253 11463548 -206573610 - HAL1 LINE L1 -2186 321 34 1052 263 73 16 chr3 11464153 11464534 -206572624 + MLT1D LTR MaLR 1 403 -102 355 171 67 16 chr3 11464566 11464921 -206572237 + (TA)n Simple_repeat Simple_repeat 1 373 0 274 186 0 0 chr3 11464921 11464980 -206572178 + MLT1D LTR MaLR 568 626 0 3372 219 129 87 chr3 11464980 11466295 -206570863 + MLT1D-int LTR MaLR 1 1371 0 1231 208 52 117 chr3 11466295 11466833 -206570325 + MLT1D LTR MaLR 1 503 -2 269 275 65 87 chr3 11466913 11467051 -206570107 + MIR SINE MIR 32 166 -96 583 325 66 26 chr3 11467464 11467843 -206569315 + MARNA DNA Mariner 94 487 -99 446 270 8 24 chr3 11467900 11468026 -206569132 + MIR SINE MIR 28 151 -111 253 246 15 0 chr3 11468031 11468096 -206569062 + MER94 DNA DNA 4 69 -65 4001 150 18 10 chr3 11468098 11468923 -206568235 + Tigger3b DNA MER2_type 1 934 -297 1215 134 0 31 chr3 11468914 11469108 -206568050 + Tigger3b DNA MER2_type 1053 1240 -1 * 967 236 82 40 chr3 11469814 11470212 -206566946 - MER21B LTR ERV1 -123 808 407 428 256 97 102 chr3 11470223 11470396 -206566762 + L2 LINE L2 2368 2540 -774 1593 206 0 0 chr3 11470396 11470678 -206566480 + AluJo SINE Alu 6 287 -25 428 256 97 102 chr3 11470678 11470915 -206566243 + L2 LINE L2 2540 2776 -538 697 281 166 11 chr3 11471379 11471856 -206565302 + L2 LINE L2 2740 3304 -9 191 111 0 28 chr3 11471867 11471903 -206565255 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2278 115 0 0 chr3 11472552 11472857 -206564301 + AluY SINE Alu 1 305 -6 22 0 0 0 chr3 11473095 11473117 -206564041 + AT_rich Low_complexity Low_complexity 1 22 0 624 268 137 65 chr3 11474518 11475029 -206562129 + MLT1H1 LTR MaLR 5 552 -3 467 281 54 18 chr3 11475064 11475231 -206561927 + L2 LINE L2 2898 3070 -243 2054 164 53 14 chr3 11475504 11475920 -206561238 - MSTB1 LTR MaLR 0 432 1 1448 165 63 14 chr3 11476276 11476455 -206560703 - AluJo SINE Alu -8 304 104 2167 109 12 38 chr3 11476455 11476775 -206560383 - AluSp SINE Alu -1 312 1 1448 165 63 14 chr3 11476775 11476880 -206560278 - AluJo SINE Alu -208 104 6 280 189 14 81 chr3 11477365 11477396 -206559762 - L2 LINE L2 -1 3271 3239 2633 153 26 0 chr3 11477396 11477813 -206559345 + MSTA LTR MaLR 1 428 0 280 189 14 81 chr3 11477813 11477855 -206559303 - L2 LINE L2 -33 3239 3203 195 42 0 0 chr3 11477980 11478004 -206559154 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 212 233 0 70 chr3 11478036 11478122 -206559036 - L2 LINE L2 -75 3238 3159 221 247 37 0 chr3 11478264 11478345 -206558813 - L2 LINE L2 -265 3007 2924 569 182 147 65 chr3 11479410 11479580 -206557578 + LTR41 LTR ERVL 1 184 -589 365 267 127 76 chr3 11479860 11480035 -206557123 + LTR41 LTR ERVL 520 711 -62 918 195 13 49 chr3 11480035 11480261 -206556897 + MER20 DNA MER1_type 1 218 -1 365 267 127 76 chr3 11480261 11480321 -206556837 + LTR41 LTR ERVL 711 767 -6 249 77 77 0 chr3 11480289 11480328 -206556830 + LTR50 LTR ERVL 754 795 0 * 2419 83 3 6 chr3 11480762 11481076 -206556082 + AluSq SINE Alu 1 313 0 181 250 0 42 chr3 11481129 11481177 -206555981 + MER5A DNA MER1_type 44 89 -100 730 193 136 23 chr3 11481231 11481407 -206555751 - MER91A DNA MER1_type 0 196 1 220 287 183 17 chr3 11481489 11481604 -206555554 - L2 LINE L2 0 3272 3139 280 280 134 34 chr3 11481655 11481826 -206555332 - MIR SINE MIR -62 146 17 434 253 104 6 chr3 11482128 11482310 -206554848 + L2 LINE L2 3114 3313 0 234 336 0 19 chr3 11482726 11482833 -206554325 - MIR SINE MIR -64 144 40 833 224 39 24 chr3 11483029 11483234 -206553924 - MLT1H LTR MaLR 0 549 342 194 206 0 0 chr3 11483316 11483350 -206553808 + MIR SINE MIR 111 144 -64 764 282 53 0 chr3 11484611 11484838 -206552320 - MIR SINE MIR -22 240 2 300 312 0 0 chr3 11485060 11485153 -206552005 + MIR SINE MIR 170 262 0 396 40 0 0 chr3 11485926 11485976 -206551182 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1909 172 0 0 chr3 11486080 11486383 -206550775 - AluSx SINE Alu -7 305 3 305 203 51 38 chr3 11486629 11486708 -206550450 + MER116 DNA Mariner 1 80 0 213 324 0 15 chr3 11486710 11486778 -206550380 - MER5A DNA MER1_type -88 101 35 235 260 178 58 chr3 11486916 11487124 -206550034 + MLT1I LTR MaLR 171 403 -6 1884 253 29 35 chr3 11487753 11488303 -206548855 + MER74B LTR ERVL 76 622 0 234 143 0 79 chr3 11488989 11489052 -206548106 + L1MC4 LINE L1 6897 6954 -1088 649 193 17 0 chr3 11489053 11489172 -206547986 + MLT1D LTR MaLR 9 129 -376 1547 230 8 54 chr3 11489172 11489564 -206547594 + MLT1A2 LTR MaLR 1 374 0 * 1827 167 55 47 chr3 11489564 11489941 -206547217 + MLT1D LTR MaLR 125 504 -1 2176 206 129 24 chr3 11489943 11490580 -206546578 + L1MC3 LINE L1 6897 7600 -185 394 273 16 48 chr3 11491465 11491652 -206545506 + GA-rich Low_complexity Low_complexity 1 181 0 1931 172 27 6 chr3 11492182 11492519 -206544639 - MLT1A1 LTR MaLR 0 365 22 346 339 98 6 chr3 11492717 11492891 -206544267 - MIR SINE MIR -22 240 51 249 341 45 7 chr3 11492905 11493101 -206544057 + MIR SINE MIR 49 253 -9 242 200 0 0 chr3 11493894 11493939 -206543219 - MIR SINE MIR -108 154 110 226 347 0 0 chr3 11493965 11494040 -206543118 - MIR SINE MIR -1 261 187 1288 190 26 15 chr3 11494131 11494559 -206542599 + MLT1C LTR MaLR 1 462 -5 223 287 126 11 chr3 11494682 11494769 -206542389 - MIR SINE MIR -112 150 54 2455 84 0 0 chr3 11494798 11495096 -206542062 + AluY SINE Alu 1 298 -13 234 150 0 0 chr3 11495156 11495196 -206541962 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 250 60 0 chr3 11495838 11495938 -206541220 + L2 LINE L2 3206 3311 -2 243 237 17 0 chr3 11496165 11496224 -206540934 + Charlie7 DNA MER1_type 46 105 -2507 2299 99 0 0 chr3 11496412 11496736 -206540422 - AluSx SINE Alu 0 312 1 1564 156 136 161 chr3 11497450 11497685 -206539473 + LTR64 LTR ERVK 1 240 -318 6118 91 18 21 chr3 11497685 11498885 -206538273 + SVA Other Other 1 868 -592 1564 156 136 161 chr3 11498885 11498898 -206538260 + LTR64 LTR ERVK 240 252 -306 6926 58 6 67 chr3 11498898 11499914 -206537244 + SVA Other Other 433 1386 0 1564 156 136 161 chr3 11499914 11500200 -206536958 + LTR64 LTR ERVK 252 525 -33 2036 118 3 36 chr3 11500200 11500506 -206536652 + AluSx SINE Alu 1 296 -16 1564 156 136 161 chr3 11500506 11500540 -206536618 + LTR64 LTR ERVK 525 558 0 430 284 44 22 chr3 11501088 11501271 -206535887 - MIR SINE MIR -70 192 6 1482 176 31 0 chr3 11502250 11502539 -206534619 + MER33 DNA MER1_type 27 324 0 742 199 239 2 chr3 11503430 11503698 -206533460 - MER2 DNA MER2_type -6 339 10 211 210 0 48 chr3 11503775 11503837 -206533321 + MIR SINE MIR 92 150 -112 352 368 56 7 chr3 11503998 11504267 -206532891 - L3 LINE CR1 -561 1016 735 604 296 39 17 chr3 11504287 11504466 -206532692 + MER5A DNA MER1_type 1 183 -6 352 305 117 0 chr3 11504501 11504655 -206532503 + MER5A DNA MER1_type 18 189 0 782 229 6 28 chr3 11504679 11504858 -206532300 - MER5A DNA MER1_type -6 183 9 4494 187 45 13 chr3 11504990 11505905 -206531253 - L1MB5 LINE L1 -10 6164 5221 127 57 0 0 chr3 11505905 11506116 -206531042 + AT_rich Low_complexity Low_complexity 1 211 0 207 262 20 27 chr3 11506121 11506270 -206530888 + (TTTAA)n Simple_repeat Simple_repeat 1 148 0 22 80 0 0 chr3 11506276 11506326 -206530832 + AT_rich Low_complexity Low_complexity 1 50 0 2982 15 0 6 chr3 11507007 11507345 -206529813 + L1PA3 LINE L1 5819 6154 -1 24 32 0 0 chr3 11507345 11507376 -206529782 + AT_rich Low_complexity Low_complexity 1 31 0 2857 80 6 0 chr3 11508543 11508904 -206528254 - THE1B LTR MaLR -1 363 1 857 204 104 15 chr3 11509461 11509662 -206527496 + MER20 DNA MER1_type 1 219 0 832 223 97 17 chr3 11509928 11510166 -206526992 + LTR16A1 LTR ERVL 201 457 0 380 183 12 12 chr3 11510970 11511052 -206526106 - MER3 DNA MER1_type -5 204 123 235 259 141 15 chr3 11511052 11511187 -206525971 + MIR3 SINE MIR 53 204 -4 891 257 147 7 chr3 11511352 11511644 -206525514 + LTR16A LTR ERVL 118 450 0 428 301 97 5 chr3 11511739 11511945 -206525213 - MIR SINE MIR -2 260 36 225 192 39 0 chr3 11512265 11512317 -206524841 + (CA)n Simple_repeat Simple_repeat 1 54 0 441 242 258 0 chr3 11512347 11512529 -206524629 - MIR SINE MIR -21 241 13 280 293 13 0 chr3 11512653 11512728 -206524430 + GA-rich Low_complexity Low_complexity 4 79 0 455 264 121 0 chr3 11512924 11513064 -206524094 - MIR SINE MIR -34 228 72 203 304 0 18 chr3 11513163 11513219 -206523939 + MIR3 SINE MIR 15 69 -139 238 237 9 18 chr3 11513323 11513437 -206523721 + (TAG)n Simple_repeat Simple_repeat 2 114 0 286 156 31 0 chr3 11513489 11513553 -206523605 + GA-rich Low_complexity Low_complexity 3 68 0 530 298 0 6 chr3 11513555 11513736 -206523422 + (TAG)n Simple_repeat Simple_repeat 1 180 0 288 306 69 14 chr3 11513819 11513963 -206523195 - MIR SINE MIR -7 255 104 449 309 22 22 chr3 11514541 11514722 -206522436 - MIR SINE MIR -50 212 32 440 327 35 80 chr3 11514933 11515334 -206521824 - L2 LINE L2 0 3272 2890 282 233 14 27 chr3 11515856 11515929 -206521229 - MLT1L LTR MaLR -115 500 429 2023 93 0 0 chr3 11516253 11516512 -206520646 + AluY SINE Alu 42 300 -11 212 209 0 0 chr3 11516527 11516570 -206520588 + L2 LINE L2 3265 3307 -6 231 325 8 48 chr3 11516644 11516770 -206520388 - MLT1K LTR MaLR -13 575 455 442 284 0 0 chr3 11517771 11517887 -206519271 + L2 LINE L2 2932 3047 -266 572 254 89 24 chr3 11518307 11518520 -206518638 + MIR SINE MIR 3 229 -33 209 361 57 0 chr3 11518571 11518693 -206518465 + L2 LINE L2 3139 3267 -5 242 200 0 0 chr3 11520365 11520415 -206516743 + (CA)n Simple_repeat Simple_repeat 1 50 0 293 324 37 9 chr3 11520882 11520990 -206516168 + L2 LINE L2 2937 3047 -225 489 181 0 11 chr3 11521323 11521417 -206515741 - MIR SINE MIR -44 218 126 934 285 90 0 chr3 11521508 11521796 -206515362 + MLT1I LTR MaLR 93 406 -3 185 352 76 52 chr3 11521799 11522253 -206514905 + L2 LINE L2 2370 2843 -471 2026 97 10 28 chr3 11522253 11522543 -206514615 - AluSg SINE Alu -22 288 4 185 352 76 52 chr3 11522543 11522682 -206514476 + L2 LINE L2 2843 2977 -337 198 392 58 0 chr3 11522867 11522987 -206514171 + L2 LINE L2 3146 3272 0 389 269 13 12 chr3 11523694 11523835 -206513323 + MIR SINE MIR 2 147 -61 356 294 7 20 chr3 11524200 11524346 -206512812 + MIR SINE MIR 107 250 -12 768 154 14 1 chr3 11524387 11524535 -206512623 - L1P4 LINE L1 -526 5635 5483 851 247 16 6 chr3 11524535 11524717 -206512441 - MER63A DNA MER1_type -25 185 2 345 361 0 15 chr3 11524720 11524853 -206512305 - MIR SINE MIR -113 149 19 744 260 100 9 chr3 11524980 11525211 -206511947 - MIR SINE MIR -10 252 1 961 272 79 14 chr3 11525656 11526377 -206510781 + L2 LINE L2 2546 3313 0 598 148 61 43 chr3 11526643 11526758 -206510400 + MLT1E LTR MaLR 40 156 -437 635 167 0 18 chr3 11526758 11526872 -206510286 + MLT1E LTR MaLR 482 593 0 972 228 11 0 chr3 11528194 11528378 -206508780 + MER5A DNA MER1_type 3 188 -1 469 274 73 40 chr3 11528588 11528956 -206508202 + MLT1H LTR MaLR 25 376 -33 572 273 75 11 chr3 11530094 11530281 -206506877 - MIR SINE MIR -18 244 46 545 272 126 5 chr3 11530398 11530589 -206506569 - MIR SINE MIR -43 219 6 228 35 0 0 chr3 11530975 11531004 -206506154 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 554 285 40 64 chr3 11531173 11531471 -206505687 + MLT1K LTR MaLR 10 300 -288 1749 175 31 3 chr3 11532104 11532390 -206504768 + AluJo SINE Alu 1 294 -18 767 273 13 4 chr3 11532574 11532801 -206504357 + MIR SINE MIR 34 262 0 497 248 5 74 chr3 11533005 11533098 -206504060 - MIR SINE MIR -21 241 143 2817 170 8 0 chr3 11533098 11533587 -206503571 + L1MB3 LINE L1 5690 6182 -1 497 248 5 74 chr3 11533587 11533712 -206503446 - MIR SINE MIR -119 143 39 251 337 0 0 chr3 11534480 11534566 -206502592 - L2 LINE L2 -35 3237 3152 287 276 23 0 chr3 11534586 11534673 -206502485 + MIR SINE MIR 117 205 -57 545 308 89 0 chr3 11534700 11534914 -206502244 - MIR SINE MIR -26 236 4 741 253 138 39 chr3 11535847 11536360 -206500798 - MLT1G1 LTR MaLR 0 595 8 368 213 33 18 chr3 11536370 11536500 -206500658 - MIR SINE MIR -61 147 13 281 163 0 0 chr3 11536501 11536550 -206500608 + L2 LINE L2 3264 3312 -1 2986 6 0 0 chr3 11536575 11536891 -206500267 - AluYb8 SINE Alu -2 316 1 485 30 167 0 chr3 11537022 11537088 -206500070 + MADE1 DNA Mariner 4 80 0 219 298 53 26 chr3 11537493 11537607 -206499551 + MIR SINE MIR 37 153 -109 521 236 91 55 chr3 11537622 11537665 -206499493 + L1ME3A LINE L1 5257 5297 -865 2700 102 8 0 chr3 11537665 11538026 -206499132 - THE1B LTR MaLR 0 364 1 521 236 91 55 chr3 11538026 11538291 -206498867 + L1ME3A LINE L1 5297 5576 -586 437 270 18 108 chr3 11538295 11538573 -206498585 + L1ME3A LINE L1 5685 5937 -233 2322 105 53 14 chr3 11539711 11540072 -206497086 - THE1C LTR MaLR 0 375 1 206 211 56 70 chr3 11540191 11540262 -206496896 + L3 LINE CR1 1370 1439 -138 491 246 8 24 chr3 11540621 11540747 -206496411 + L2 LINE L2 3190 3313 0 521 258 160 24 chr3 11541478 11541691 -206495467 - MIR SINE MIR -19 243 2 442 222 50 4 chr3 11542363 11542503 -206494655 + MER5A DNA MER1_type 4 178 0 203 327 20 20 chr3 11542504 11542605 -206494553 + MER5A DNA MER1_type 86 186 -3 360 0 0 0 chr3 11542959 11542999 -206494159 + (CA)n Simple_repeat Simple_repeat 2 41 0 779 288 105 27 chr3 11543052 11543286 -206493872 + L2 LINE L2 2496 2710 -604 1733 204 101 40 chr3 11543286 11543761 -206493397 - MLT1D LTR MaLR 0 505 2 779 288 105 27 chr3 11543761 11543964 -206493194 + L2 LINE L2 2710 2967 -347 532 203 17 51 chr3 11544642 11544760 -206492398 - MER81 DNA DNA 0 114 1 887 282 80 26 chr3 11544770 11545244 -206491914 - MER115 DNA AcHobo -4 689 148 231 155 52 52 chr3 11545807 11545865 -206491293 - MER113 DNA MER1_type? -432 89 32 381 290 23 78 chr3 11545894 11546050 -206491108 + MIR SINE MIR 48 190 -72 2375 82 7 0 chr3 11546050 11546343 -206490815 + AluY SINE Alu 1 295 -16 381 290 23 78 chr3 11546343 11546403 -206490755 + MIR SINE MIR 190 252 -10 207 233 33 0 chr3 11546411 11546471 -206490687 + (TAG)n Simple_repeat Simple_repeat 3 64 0 2815 86 6 0 chr3 11546527 11546889 -206490269 + THE1B LTR MaLR 1 364 0 727 253 18 22 chr3 11547952 11548181 -206488977 + MIR SINE MIR 35 262 0 188 311 87 19 chr3 11548379 11548482 -206488676 + L2 LINE L2 3203 3312 -1 2139 25 0 0 chr3 11549396 11549634 -206487524 - AluY SINE Alu -13 298 61 180 354 142 0 chr3 11549729 11549842 -206487316 - MIR SINE MIR -16 246 118 425 249 33 106 chr3 11550085 11550330 -206486828 + L3 LINE CR1 1271 1497 -80 286 392 54 5 chr3 11550621 11550825 -206486333 - MIR SINE MIR -29 233 20 487 282 45 6 chr3 11551698 11551854 -206485304 + MIR SINE MIR 30 191 -71 191 195 218 0 chr3 11552750 11552837 -206484321 - MIR SINE MIR -122 140 35 615 228 98 31 chr3 11553173 11553485 -206483673 - LTR33 LTR ERVL -142 379 5 358 245 66 0 chr3 11553593 11553699 -206483459 + MIR SINE MIR 76 188 -74 1145 224 84 45 chr3 11554128 11554700 -206482458 - MLT1E1 LTR MaLR 0 654 1 255 274 0 60 chr3 11555650 11555734 -206481424 + MIR SINE MIR 36 114 -94 292 170 0 0 chr3 11555919 11555966 -206481192 + MER3 DNA MER1_type 41 87 -122 1238 210 33 16 chr3 11555978 11556283 -206480875 + MER33 DNA MER1_type 15 324 0 622 305 103 42 chr3 11556298 11556815 -206480343 + L2 LINE L2 2755 3301 -12 303 330 34 11 chr3 11556977 11557104 -206480054 + MIR SINE MIR 2 131 -77 232 375 0 0 chr3 11557203 11557291 -206479867 + L2 LINE L2 3185 3272 0 1650 144 56 32 chr3 11558198 11558389 -206478769 + L1MA4 LINE L1 5950 6154 -146 2265 129 0 0 chr3 11558389 11558698 -206478460 + AluSx SINE Alu 1 309 -3 1650 144 56 32 chr3 11558698 11558846 -206478312 + L1MA4 LINE L1 6154 6297 -3 586 31 107 0 chr3 11560935 11561094 -206476064 + (TA)n Simple_repeat Simple_repeat 2 177 0 363 44 0 0 chr3 11561238 11561283 -206475875 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 278 67 56 chr3 11561604 11561756 -206475402 + MIR3 SINE MIR 31 184 -53 591 280 40 30 chr3 11563553 11563753 -206473405 + MIR SINE MIR 17 218 -44 284 302 142 0 chr3 11564045 11564151 -206473007 - MIR3 SINE MIR -6 202 82 333 285 81 24 chr3 11566367 11566490 -206470668 - MIR3 SINE MIR -67 141 12 312 310 123 6 chr3 11567646 11567817 -206469341 + MIR SINE MIR 62 252 -10 367 343 0 0 chr3 11568142 11568244 -206468914 - L2 LINE L2 0 3272 3171 1420 225 78 0 chr3 11569112 11569521 -206467637 + Charlie4a DNA MER1_type 8 448 -60 201 300 17 0 chr3 11569597 11569657 -206467501 + (CA)n Simple_repeat Simple_repeat 2 62 0 380 289 38 44 chr3 11569657 11569816 -206467342 + MIR SINE MIR 5 162 -100 370 296 9 26 chr3 11570158 11570273 -206466885 - L2 LINE L2 -171 3101 2989 597 274 16 12 chr3 11571449 11571632 -206465526 - MIR3 SINE MIR -23 185 6 413 319 48 16 chr3 11571635 11571823 -206465335 - L3 LINE CR1 -72 1505 1312 268 149 106 53 chr3 11572498 11572592 -206464566 + L1ME2 LINE L1 5148 5246 -900 217 245 0 0 chr3 11572707 11572756 -206464402 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 213 65 0 0 chr3 11572765 11572796 -206464362 + (CATA)n Simple_repeat Simple_repeat 2 32 0 3085 256 40 9 chr3 11572808 11573672 -206463486 + L1ME2 LINE L1 5255 6145 -19 190 222 0 0 chr3 11575613 11575649 -206461509 - L2 LINE L2 -21 3251 3216 328 317 92 0 chr3 11575673 11575793 -206461365 - MIR SINE MIR -112 150 20 1776 146 78 7 chr3 11575825 11576134 -206461024 + MER46B DNA MER2_type 31 236 0 936 244 69 19 chr3 11576165 11576485 -206460673 - MER113 DNA MER1_type? 0 521 186 403 279 34 78 chr3 11576636 11576815 -206460343 - MIR SINE MIR -46 216 46 628 187 32 16 chr3 11577706 11577829 -206459329 - L2 LINE L2 -13 3300 3176 210 71 0 0 chr3 11578412 11578440 -206458718 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 210 105 0 0 chr3 11578578 11578616 -206458542 + (TG)n Simple_repeat Simple_repeat 2 39 0 33 0 0 0 chr3 11581466 11581499 -206455659 + AT_rich Low_complexity Low_complexity 1 33 0 249 182 0 0 chr3 11582003 11582058 -206455100 + (CA)n Simple_repeat Simple_repeat 2 56 0 225 32 0 0 chr3 11582760 11582791 -206454367 - L1MA3 LINE L1 -1 6304 6274 180 0 0 0 chr3 11582871 11582891 -206454267 + (A)n Simple_repeat Simple_repeat 1 20 0 4265 115 78 29 chr3 11583274 11583352 -206453806 - L1MA9 LINE L1 0 6312 6239 186 43 0 0 chr3 11583352 11583375 -206453783 + (TTG)n Simple_repeat Simple_repeat 1 23 0 1643 175 4 0 chr3 11583375 11583655 -206453503 - AluJo SINE Alu -31 281 1 4265 115 78 29 chr3 11583655 11584069 -206453089 - L1MA9 LINE L1 -73 6239 5767 249 119 0 0 chr3 11584069 11584111 -206453047 + (TG)n Simple_repeat Simple_repeat 1 42 0 4265 115 78 29 chr3 11584111 11584370 -206452788 - L1MA9 LINE L1 -545 5767 5522 681 254 6 6 chr3 11584450 11584627 -206452531 - MER5B DNA MER1_type -1 177 1 313 292 52 0 chr3 11584639 11584735 -206452423 + MER5A DNA MER1_type 5 105 -84 195 284 27 68 chr3 11584973 11585047 -206452111 + MIR SINE MIR 5 75 -187 201 281 129 76 chr3 11585152 11585220 -206451938 + MIR SINE MIR 83 146 -116 853 183 56 6 chr3 11585220 11585400 -206451758 - MER5A DNA MER1_type 0 189 1 201 281 129 76 chr3 11585400 11585502 -206451656 + MIR SINE MIR 146 262 0 778 208 62 6 chr3 11585703 11585881 -206451277 + MIR SINE MIR 74 261 -1 233 264 7 81 chr3 11585996 11586144 -206451014 + MIR SINE MIR 92 228 -34 1079 263 80 65 chr3 11586436 11586884 -206450274 - LTR37B LTR ERV1 -4 464 10 1414 163 0 27 chr3 11586901 11587158 -206450000 - AluJo SINE Alu -54 258 9 186 338 0 27 chr3 11587291 11587365 -206449793 - MIR SINE MIR -118 90 19 305 332 73 44 chr3 11588529 11588734 -206448424 - MIR SINE MIR -20 242 32 268 336 17 42 chr3 11588930 11589049 -206448109 - MIR3 SINE MIR -50 158 43 183 42 0 0 chr3 11589063 11589087 -206448071 + (CTCTG)n Simple_repeat Simple_repeat 4 27 0 198 331 121 0 chr3 11589905 11590029 -206447129 + L2 LINE L2 2905 3043 -229 359 236 111 76 chr3 11590155 11590299 -206446859 - MIR SINE MIR -105 157 9 245 248 220 46 chr3 11590368 11590477 -206446681 + L2 LINE L2 3139 3266 -6 338 293 229 7 chr3 11590630 11590770 -206446388 - MER5A DNA MER1_type -6 183 13 229 250 83 0 chr3 11592080 11592164 -206444994 + MER91C DNA MER1_type 50 140 0 342 296 167 6 chr3 11592349 11592511 -206444647 - MIR SINE MIR -71 191 4 243 323 0 0 chr3 11592601 11592666 -206444492 - L3 LINE CR1 -22 1555 1491 197 325 267 8 chr3 11592718 11592838 -206444320 - L3 LINE CR1 -197 1380 1230 518 226 43 24 chr3 11592900 11593064 -206444094 - L1MEc LINE L1 -6210 186 20 30 0 0 0 chr3 11593972 11594002 -206443156 + AT_rich Low_complexity Low_complexity 1 30 0 304 253 40 30 chr3 11594166 11594265 -206442893 - MER103 DNA DNA -59 107 8 1109 176 23 19 chr3 11594477 11594693 -206442465 - MER20 DNA MER1_type -1 218 2 1145 210 5 0 chr3 11595321 11595526 -206441632 - MER58A DNA MER1_type 0 224 19 252 328 70 23 chr3 11596233 11596361 -206440797 + MIR3 SINE MIR 52 185 -23 184 238 89 59 chr3 11596653 11596754 -206440404 - MIR SINE MIR -72 136 33 * 290 348 63 13 chr3 11596701 11596859 -206440299 + MER5B DNA MER1_type 13 178 0 274 307 13 0 chr3 11596924 11596999 -206440159 - MER5A DNA MER1_type -88 101 26 270 284 60 82 chr3 11597126 11597370 -206439788 + L2 LINE L2 2789 3032 -240 185 364 13 0 chr3 11597453 11597530 -206439628 + L2 LINE L2 3207 3284 -29 268 289 29 19 chr3 11597563 11597667 -206439491 + MER5C DNA MER1_type 1 105 -219 497 288 6 34 chr3 11597866 11598082 -206439076 + G-rich Low_complexity Low_complexity 1 209 0 5725 87 20 26 chr3 11598141 11599458 -206437700 + SVA Other Other 1 868 -520 6600 64 9 63 chr3 11599505 11600872 -206436286 + SVA Other Other 433 1386 0 1079 171 243 59 chr3 11600872 11601158 -206436000 + LTR64 LTR ERVK 179 532 -26 1915 118 3 36 chr3 11601158 11601464 -206435694 + AluSx SINE Alu 1 296 -16 1079 171 243 59 chr3 11601464 11601498 -206435660 + LTR64 LTR ERVK 532 558 0 509 262 49 27 chr3 11602045 11602228 -206434930 - MIR SINE MIR -70 192 6 1477 176 31 0 chr3 11603207 11603496 -206433662 + MER33 DNA MER1_type 27 324 0 1542 109 5 0 chr3 11603727 11603947 -206433211 - AluSg SINE Alu -89 221 1 399 21 0 0 chr3 11605716 11605764 -206431394 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1675 44 5 0 chr3 11605765 11605969 -206431189 - L1PA5 LINE L1 -17 6137 5933 1142 44 0 0 chr3 11605969 11606105 -206431053 + L1PA5 LINE L1 5806 5941 -213 801 268 20 45 chr3 11606250 11606496 -206430662 - MIR SINE MIR -11 251 12 240 269 65 11 chr3 11606673 11606766 -206430392 - MIR SINE MIR -48 214 117 508 281 70 5 chr3 11606782 11606967 -206430191 - MER117 DNA MER1_type 0 197 1 2307 81 3 0 chr3 11607192 11607488 -206429670 + AluSq SINE Alu 1 297 -16 251 122 0 0 chr3 11607748 11607789 -206429369 + MER117 DNA MER1_type 50 90 -107 1664 144 47 23 chr3 11607927 11608226 -206428932 - AluSx SINE Alu -6 306 1 1016 209 62 0 chr3 11608629 11608854 -206428304 + MIR SINE MIR 21 259 -3 887 85 8 0 chr3 11609303 11609433 -206427725 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 1258 180 117 8 chr3 11609433 11609689 -206427469 - AluJo SINE Alu -17 285 2 420 210 100 0 chr3 11609702 11609802 -206427356 + MER5A DNA MER1_type 72 181 -8 416 303 66 20 chr3 11610126 11610278 -206426880 - MIR3 SINE MIR -34 174 16 400 281 42 62 chr3 11611506 11611698 -206425460 + MER5A DNA MER1_type 1 188 -1 1839 113 25 21 chr3 11611778 11612084 -206425074 + AluSg SINE Alu 1 307 0 1257 104 95 54 chr3 11612107 11612328 -206424830 + MER30 DNA MER1_type 1 230 0 391 265 102 18 chr3 11612351 11612517 -206424641 - MIR SINE MIR -76 186 7 346 334 0 6 chr3 11613425 11613441 -206423717 - L1ME3 LINE L1 -1 6163 6148 2029 156 3 44 chr3 11613441 11613535 -206423623 - MER7A DNA MER2_type -2692 346 250 2206 68 24 3 chr3 11613535 11613828 -206423330 + AluY SINE Alu 1 299 -12 2029 156 3 44 chr3 11613828 11614093 -206423065 - MER7A DNA MER2_type -2788 250 4 346 334 0 6 chr3 11614093 11614207 -206422951 - L1ME3 LINE L1 -16 6148 6038 454 333 155 34 chr3 11614937 11615349 -206421809 - L2 LINE L2 0 3272 2811 2649 129 39 5 chr3 11615564 11615976 -206421182 - MSTC LTR MaLR 0 428 3 441 274 108 21 chr3 11617281 11617467 -206419691 - MIR SINE MIR -11 251 50 301 263 0 26 chr3 11618288 11618364 -206418794 + MER103 DNA DNA 24 97 -69 690 204 99 0 chr3 11618374 11618526 -206418632 - MER5A DNA MER1_type -22 167 1 200 83 28 0 chr3 11618648 11618662 -206418496 + (TATG)n Simple_repeat Simple_repeat 4 16 -24 2014 68 0 0 chr3 11618662 11618912 -206418246 - AluY SINE Alu -26 285 36 200 83 28 0 chr3 11618912 11618933 -206418225 + (TATG)n Simple_repeat Simple_repeat 16 40 0 759 163 0 7 chr3 11619964 11620099 -206417059 - FRAM SINE Alu -8 168 35 278 277 11 21 chr3 11620099 11620193 -206416965 - MIR SINE MIR -65 197 105 216 0 0 0 chr3 11621641 11621665 -206415493 + (T)n Simple_repeat Simple_repeat 1 24 0 1158 199 4 13 chr3 11621697 11621923 -206415235 - MER58A DNA MER1_type 0 224 1 383 285 69 49 chr3 11622039 11622183 -206414975 - MIR SINE MIR -12 250 104 363 213 27 0 chr3 11622184 11622259 -206414899 - MER112 DNA MER1_type -6 254 178 213 39 0 0 chr3 11622328 11622354 -206414804 + (TG)n Simple_repeat Simple_repeat 2 27 0 194 361 36 12 chr3 11622419 11622502 -206414656 - MIR SINE MIR -95 113 29 266 296 112 24 chr3 11622936 11623061 -206414097 - MIR3 SINE MIR -70 138 3 705 286 143 36 chr3 11623644 11624168 -206412990 - MLT1G LTR MaLR 0 590 11 749 147 92 65 chr3 11624765 11624949 -206412209 + MER5A DNA MER1_type 1 189 0 226 350 42 33 chr3 11625160 11625280 -206411878 + MIR3 SINE MIR 42 162 -46 651 235 136 0 chr3 11625326 11625488 -206411670 - MIR SINE MIR -65 197 14 845 154 0 0 chr3 11626047 11626177 -206410981 + AluJo SINE Alu 6 135 -177 1081 210 147 52 chr3 11627137 11627485 -206409673 - MER58D DNA MER1_type -3 383 3 437 329 0 22 chr3 11627513 11627650 -206409508 + MIR SINE MIR 20 153 -109 309 288 34 68 chr3 11628386 11628532 -206408626 + MIR SINE MIR 52 192 -70 667 233 71 60 chr3 11628556 11628822 -206408336 + L2 LINE L2 3028 3296 -17 428 359 114 19 chr3 11629018 11629333 -206407825 - L2 LINE L2 -14 3258 2914 264 359 55 7 chr3 11629333 11629478 -206407680 - L2 LINE L2 0 3272 3121 3371 164 84 0 chr3 11629555 11630189 -206406969 + L1MC3 LINE L1 7080 7766 -19 1701 166 0 4 chr3 11630204 11630482 -206406676 - AluJo SINE Alu -27 285 9 31 0 0 0 chr3 11630490 11630521 -206406637 + AT_rich Low_complexity Low_complexity 1 31 0 2835 176 30 23 chr3 11630525 11631134 -206406024 + Charlie1 DNA MER1_type 2149 2761 0 634 194 2 70 chr3 11631145 11631318 -206405840 - MIR SINE MIR -64 144 35 298 271 85 29 chr3 11631693 11631827 -206405331 + MIR SINE MIR 101 243 -19 517 275 77 47 chr3 11631836 11632069 -206405089 + MIR SINE MIR 23 262 0 246 169 0 51 chr3 11632078 11632137 -206405021 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 242 353 139 0 chr3 11632237 11632359 -206404799 - L3 LINE CR1 -114 1463 1325 321 307 31 55 chr3 11632488 11632651 -206404507 - MIR SINE MIR 0 262 104 791 293 4 25 chr3 11632663 11632902 -206404256 - MIR SINE MIR -21 241 8 21 57 0 0 chr3 11634494 11634529 -206402629 + AT_rich Low_complexity Low_complexity 1 35 0 445 317 18 115 chr3 11635332 11635633 -206401525 - L2 LINE L2 0 3272 3016 1616 157 57 0 chr3 11635633 11635914 -206401244 + AluJb SINE Alu 2 298 -14 445 317 18 115 chr3 11635914 11636003 -206401155 - L2 LINE L2 -256 3016 2920 180 103 35 0 chr3 11636030 11636059 -206401099 - L2 LINE L2 -52 3220 3191 4334 225 43 9 chr3 11637754 11638808 -206398350 - L1MC4 LINE L1 -151 7891 6803 998 109 48 0 chr3 11639173 11639338 -206397820 - L1MA8 LINE L1 -6 6285 6113 787 241 50 146 chr3 11639735 11640271 -206396887 - MLT1K LTR MaLR -2 586 102 563 301 7 7 chr3 11641370 11641516 -206395642 - L2 LINE L2 0 3313 3168 655 273 121 4 chr3 11641654 11641885 -206395273 + MIR SINE MIR 2 259 -3 234 81 0 0 chr3 11642116 11642153 -206395005 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 327 27 36 chr3 11642484 11642594 -206394564 - MER5A DNA MER1_type -7 182 74 343 338 34 14 chr3 11642601 11642749 -206394409 - MIR3 SINE MIR -24 184 34 1131 208 0 0 chr3 11642964 11643161 -206393997 - MER58A DNA MER1_type 0 224 28 538 125 0 62 chr3 11643530 11643626 -206393532 + FRAM SINE Alu 72 161 -15 1544 186 40 3 chr3 11643632 11643928 -206393230 + AluJb SINE Alu 6 312 0 2225 116 0 0 chr3 11646245 11646556 -206390602 + AluSx SINE Alu 1 311 -1 826 174 8 0 chr3 11647058 11647190 -206389968 + FLAM_A SINE Alu 1 133 0 215 184 214 61 chr3 11647297 11647395 -206389763 - MIR SINE MIR -92 170 58 394 316 30 8 chr3 11647437 11647570 -206389588 - MIR3 SINE MIR -66 142 7 1410 257 78 36 chr3 11648385 11649094 -206388064 + L2 LINE L2 2554 3313 0 2482 177 47 40 chr3 11649242 11649796 -206387362 + MER74A LTR ERVL 1 558 0 473 276 0 0 chr3 11649852 11649957 -206387201 + L2 LINE L2 3168 3272 0 216 250 58 0 chr3 11649960 11650012 -206387146 - L2 LINE L2 -20 3293 3239 467 350 35 15 chr3 11650019 11650216 -206386942 + MIR SINE MIR 34 234 -28 378 242 0 32 chr3 11650278 11650373 -206386785 - MIR SINE MIR -109 153 62 254 269 158 41 chr3 11650689 11650860 -206386298 + Charlie8 DNA MER1_type 67 257 -2160 238 160 40 0 chr3 11650975 11651025 -206386133 + HSMAR1 DNA Mariner 1236 1287 0 592 194 8 0 chr3 11651036 11651162 -206385996 - L1 LINE L1 -1514 4632 4502 334 267 117 39 chr3 11651327 11651507 -206385651 - L2 LINE L2 -112 3201 3008 716 245 32 0 chr3 11651563 11651718 -206385440 + MLT1H LTR MaLR 2 161 -388 2014 201 61 38 chr3 11651719 11652306 -206384852 - L1M4 LINE L1 -1243 4903 4303 963 264 48 29 chr3 11652323 11652702 -206384456 - L1ME LINE L1 -5632 438 53 3174 82 59 0 chr3 11652706 11653130 -206384028 - MLT2A2 LTR ERVL -4 449 1 2049 139 39 22 chr3 11653179 11653539 -206383619 + L1MB4 LINE L1 5475 5840 -340 1608 191 42 35 chr3 11653539 11653916 -206383242 - MLT1B LTR MaLR -7 383 4 1684 176 17 37 chr3 11653916 11654269 -206382889 + L1MB4 LINE L1 5834 6179 -1 264 341 8 56 chr3 11655064 11655190 -206381968 + MIR SINE MIR 53 172 -90 198 214 24 0 chr3 11655168 11655210 -206381948 + L2 LINE L2 3257 3299 -14 * 315 315 46 0 chr3 11655335 11655443 -206381715 - MIR SINE MIR -62 200 88 186 147 0 29 chr3 11655570 11655604 -206381554 + MIR SINE MIR 117 149 -113 319 303 0 10 chr3 11655721 11655820 -206381338 + L2 LINE L2 3171 3268 -4 386 286 71 0 chr3 11656728 11656854 -206380304 + MIR SINE MIR 51 185 -77 267 333 75 25 chr3 11657048 11657207 -206379951 + MIR SINE MIR 45 211 -51 442 220 121 40 chr3 11657574 11657747 -206379411 - MIR SINE MIR -29 233 47 1248 229 111 60 chr3 11657897 11658330 -206378828 - MER77 LTR ERV1 -7 598 144 347 254 109 57 chr3 11658440 11658588 -206378570 + L1ME4a LINE L1 5897 6061 -60 1744 157 4 0 chr3 11658588 11658897 -206378261 - AluJo SINE Alu 0 310 1 347 254 109 57 chr3 11658897 11658939 -206378219 + L1ME4a LINE L1 6061 6099 -22 479 304 83 12 chr3 11659958 11660126 -206377032 - MIR SINE MIR -62 200 21 2342 100 36 28 chr3 11660620 11660981 -206376177 + THE1B LTR MaLR 1 364 0 241 157 39 20 chr3 11661033 11661084 -206376074 + GA-rich Low_complexity Low_complexity 1 52 0 1435 313 148 19 chr3 11661496 11662455 -206374703 + L3 LINE CR1 418 1500 -77 330 224 82 12 chr3 11663260 11663345 -206373813 - MIR SINE MIR -76 132 42 1319 202 0 13 chr3 11663600 11663833 -206373325 + Tigger7 DNA MER2_type 1 230 -475 2093 124 0 0 chr3 11663857 11664156 -206373002 + AluSx SINE Alu 1 299 -13 657 158 0 0 chr3 11664182 11664277 -206372881 + Tigger7 DNA MER2_type 2393 2487 0 459 217 63 72 chr3 11664477 11664684 -206372474 + L1MC5 LINE L1 7719 7923 -38 788 231 92 57 chr3 11665394 11665542 -206371616 - MER113 DNA MER1_type? -25 496 355 1521 187 42 3 chr3 11665542 11665825 -206371333 + AluJb SINE Alu 1 294 -18 788 231 92 57 chr3 11665825 11665992 -206371166 - MER113 DNA MER1_type? -166 355 170 373 318 30 0 chr3 11666166 11666298 -206370860 - MER69 DNA AcHobo -2297 229 94 780 213 0 3 chr3 11666420 11666765 -206370393 + (CAT)n Simple_repeat Simple_repeat 1 344 0 673 293 68 20 chr3 11666767 11667016 -206370142 - MIR SINE MIR 0 262 2 1705 182 0 3 chr3 11667579 11667876 -206369282 + AluSx SINE Alu 1 296 -16 340 383 0 0 chr3 11667936 11668064 -206369094 + MIR SINE MIR 16 143 -65 192 77 0 0 chr3 11668419 11668445 -206368713 + (TG)n Simple_repeat Simple_repeat 1 26 0 185 143 0 0 chr3 11668517 11668552 -206368606 - MIR SINE MIR -126 136 102 2528 88 11 6 chr3 11668644 11668996 -206368162 + THE1A LTR MaLR 2 355 0 4808 159 37 4 chr3 11669535 11670372 -206366786 - MER6 DNA MER2_type 0 865 1 562 247 155 101 chr3 11670372 11670907 -206366251 + L1ME4a LINE L1 5555 6118 -3 182 260 178 14 chr3 11671035 11671108 -206366050 + MIR SINE MIR 59 143 -119 983 88 7 0 chr3 11671279 11671427 -206365731 - L1PA6 LINE L1 -1 6153 6005 606 303 131 17 chr3 11671636 11671996 -206365162 - LTR33 LTR ERVL -4 517 117 1474 194 55 35 chr3 11672001 11672347 -206364811 - MLT1A1 LTR MaLR -3 362 10 429 206 114 15 chr3 11672353 11672484 -206364674 - LTR33 LTR ERVL -372 149 6 387 298 76 41 chr3 11673797 11674179 -206362979 + MLT1K LTR MaLR 156 580 -8 336 303 102 3 chr3 11674712 11674885 -206362273 + MIR SINE MIR 30 221 -41 1403 188 78 20 chr3 11674896 11675241 -206361917 - MLT1A1 LTR MaLR 0 365 1 1032 150 20 0 chr3 11675684 11675837 -206361321 + FRAM SINE Alu 1 153 -23 443 241 12 68 chr3 11675843 11675876 -206361282 - MIR SINE MIR 0 262 229 2179 120 28 11 chr3 11675876 11676234 -206360924 + THE1B LTR MaLR 1 364 0 443 241 12 68 chr3 11676234 11676362 -206360796 - MIR SINE MIR -33 229 110 626 164 66 0 chr3 11676666 11676788 -206360370 - THE1C LTR MaLR -245 130 1 392 230 0 0 chr3 11676823 11676897 -206360261 - AluJ/FRAM SINE Alu -5 297 224 785 264 15 5 chr3 11677205 11677406 -206359752 + MIR SINE MIR 60 262 0 40989 33 25 2 chr3 11677442 11683452 -206353706 + L1PA3 LINE L1 1 6154 -1 326 250 30 20 chr3 11683715 11683815 -206353343 - MER20B DNA MER1_type -639 144 44 1056 216 116 9 chr3 11685036 11685352 -206351806 + MLT1G3 LTR MaLR 182 571 -19 215 330 30 94 chr3 11685953 11686054 -206351104 + L2 LINE L2 2702 2785 -529 2236 124 22 28 chr3 11686054 11686418 -206350740 + THE1B LTR MaLR 3 364 0 215 330 30 94 chr3 11686418 11686519 -206350639 + L2 LINE L2 2785 2891 -423 372 270 151 6 chr3 11687432 11687600 -206349558 + MIR SINE MIR 3 192 -63 542 229 0 8 chr3 11688257 11688375 -206348783 + MIR SINE MIR 26 142 -66 194 345 24 0 chr3 11689787 11689871 -206347287 - L2 LINE L2 -24 3248 3163 215 286 19 48 chr3 11689911 11690016 -206347142 - L2 LINE L2 -4 3309 3208 704 280 32 0 chr3 11690513 11690699 -206346459 - MER58A DNA MER1_type -3 221 30 641 250 162 26 chr3 11690792 11691132 -206346026 + L2 LINE L2 2926 3311 -2 218 256 13 0 chr3 11691138 11691216 -206345942 + GA-rich Low_complexity Low_complexity 3 81 0 471 246 78 7 chr3 11691596 11691738 -206345420 + MIR SINE MIR 1 152 -110 1870 230 62 45 chr3 11692349 11692901 -206344257 + MLT1K LTR MaLR 13 573 -15 225 300 208 0 chr3 11693452 11693572 -206343586 - L2 LINE L2 -2 3311 3167 249 225 56 56 chr3 11693793 11693882 -206343276 + MIR3 SINE MIR 104 192 -16 1295 250 59 44 chr3 11694375 11694769 -206342389 + MLT1C LTR MaLR 1 404 -63 2431 75 0 13 chr3 11694769 11695075 -206342083 - AluY SINE Alu -9 302 1 1295 250 59 44 chr3 11695075 11695136 -206342022 + MLT1C LTR MaLR 404 463 -4 408 298 33 8 chr3 11695361 11695482 -206341676 - MIR3 SINE MIR -6 202 79 215 363 12 0 chr3 11696899 11696979 -206340179 - L2 LINE L2 -1 3312 3232 754 301 4 9 chr3 11697000 11697226 -206339932 + MIR SINE MIR 13 237 -25 185 108 27 0 chr3 11697246 11697283 -206339875 + (CACCAT)n Simple_repeat Simple_repeat 6 43 0 223 322 26 52 chr3 11697433 11697548 -206339610 - L2 LINE L2 -213 3059 2948 181 282 64 39 chr3 11697778 11697856 -206339302 - MIR3 SINE MIR -17 191 112 534 231 50 0 chr3 11698424 11698545 -206338613 - MIR3 SINE MIR -12 196 70 484 391 29 0 chr3 11698822 11699029 -206338129 + MIR SINE MIR 19 231 -31 2272 82 6 57 chr3 11699059 11699376 -206337782 - AluSq SINE Alu -12 301 1 217 264 191 18 chr3 11700013 11700123 -206337035 - MIR SINE MIR -119 143 15 851 228 73 0 chr3 11700788 11700994 -206336164 - MER58A DNA MER1_type -3 221 1 388 296 138 13 chr3 11701004 11701156 -206336002 - MER5A DNA MER1_type -3 186 5 1338 231 170 19 chr3 11702085 11702497 -206334661 + MLT1H1 LTR MaLR 65 538 -17 869 253 92 4 chr3 11702498 11702747 -206334411 + LTR16B LTR ERVL 194 464 0 607 203 16 31 chr3 11702758 11702886 -206334272 - MIR SINE MIR -117 145 20 305 143 0 18 chr3 11702894 11702950 -206334208 + Tigger5 DNA MER2_type 1 55 -2268 639 299 79 0 chr3 11703316 11703493 -206333665 - MIR3 SINE MIR -10 198 8 198 269 65 32 chr3 11703696 11703789 -206333369 + L2 LINE L2 2943 3038 -234 274 345 90 23 chr3 11703854 11704031 -206333127 + L2 LINE L2 2701 2889 -425 284 250 12 12 chr3 11704291 11704371 -206332787 + L2 LINE L2 3193 3272 0 189 195 0 0 chr3 11704429 11704470 -206332688 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 224 268 56 14 chr3 11705133 11705204 -206331954 - L2 LINE L2 -8 3305 3232 1840 291 94 30 chr3 11705346 11706313 -206330845 + L1M4 LINE L1 3879 4953 -1193 808 233 78 91 chr3 11706313 11706841 -206330317 + LTR33 LTR ERVL 1 521 0 1840 291 94 30 chr3 11706841 11707176 -206329982 + L1M4 LINE L1 4953 5265 -881 1769 158 0 46 chr3 11707231 11707554 -206329604 + AluSx SINE Alu 1 308 -4 227 111 0 22 chr3 11707723 11707768 -206329390 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 219 292 62 31 chr3 11707935 11708031 -206329127 + MIR SINE MIR 56 154 -108 206 306 14 0 chr3 11708766 11708838 -206328320 + MIR SINE MIR 58 130 -78 2361 89 16 0 chr3 11709585 11709889 -206327269 + AluY SINE Alu 1 309 -2 437 221 131 8 chr3 11710085 11710207 -206326951 + MER5A DNA MER1_type 9 145 -44 371 250 12 0 chr3 11710616 11710700 -206326458 + L2 LINE L2 3186 3270 -2 670 235 0 15 chr3 11710774 11710910 -206326248 - MLT1A1 LTR MaLR 0 365 232 1931 133 2 60 chr3 11710912 11711312 -206325846 - MER4B LTR ERV1 0 610 234 219 313 12 0 chr3 11712678 11712758 -206324400 - MIR SINE MIR -13 249 169 682 226 34 34 chr3 11712760 11712937 -206324221 - MIR SINE MIR -64 198 22 257 273 30 0 chr3 11713342 11713408 -206323750 + MIR SINE MIR 69 136 -126 436 256 39 32 chr3 11714902 11714975 -206322183 - MER103 DNA DNA -8 158 87 1877 138 40 6 chr3 11714975 11715301 -206321857 - MER1B DNA MER1_type 0 337 1 436 256 39 32 chr3 11715301 11715383 -206321775 - MER103 DNA DNA -79 87 2 548 296 105 39 chr3 11716125 11716459 -206320699 + L2 LINE L2 2958 3313 0 210 150 0 0 chr3 11716461 11716501 -206320657 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr3 11718945 11718969 -206318189 + AT_rich Low_complexity Low_complexity 1 24 0 300 262 24 0 chr3 11720537 11720621 -206316537 - MER117 DNA MER1_type 0 197 112 596 172 101 65 chr3 11721323 11721492 -206315666 + MLT1B LTR MaLR 1 175 -215 1759 148 16 30 chr3 11721492 11721795 -206315363 + AluJb SINE Alu 1 299 -13 902 198 0 23 chr3 11722343 11722520 -206314638 + MIR SINE MIR 63 235 -27 522 275 225 39 chr3 11723507 11723965 -206313193 + L2 LINE L2 2373 2915 -399 340 343 39 34 chr3 11723974 11724178 -206312980 - L1MC4 LINE L1 -17 8025 7821 1816 145 0 26 chr3 11724180 11724491 -206312667 - AluJo SINE Alu -9 303 1 557 267 18 120 chr3 11724496 11724829 -206312329 + L2 LINE L2 2886 3184 -129 378 171 0 0 chr3 11724847 11724917 -206312241 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 426 296 48 0 chr3 11724940 11725065 -206312093 + L2 LINE L2 3182 3312 -1 438 234 177 40 chr3 11725068 11725243 -206311915 - MIR SINE MIR -17 245 47 3692 262 61 18 chr3 11726123 11727237 -206309921 + L1MB7 LINE L1 11 1172 -5687 12682 204 40 41 chr3 11727239 11727329 -206309829 + L1MB7 LINE L1 2672 2761 -4234 1733 172 28 8 chr3 11727329 11727689 -206309469 + L1MA6 LINE L1 5934 6300 0 12682 204 40 41 chr3 11727689 11729499 -206307659 + L1MB7 LINE L1 2761 4571 -2424 1851 135 7 3 chr3 11729499 11729820 -206307338 + AluSx SINE Alu 1 322 0 12682 204 40 41 chr3 11729820 11732274 -206304884 + L1MB7 LINE L1 4571 6995 0 2072 109 0 3 chr3 11732427 11732744 -206304414 + AluSc SINE Alu 1 316 0 1302 234 11 34 chr3 11732748 11733102 -206304056 + L1ME1 LINE L1 5818 6163 -3 1595 256 156 29 chr3 11733130 11733991 -206303167 + L1M4 LINE L1 4297 5266 -880 247 236 0 0 chr3 11742435 11742490 -206294668 + Tigger5 DNA MER2_type 139 193 -2130 441 209 0 11 chr3 11742495 11742586 -206294572 + Tigger5 DNA MER2_type 2234 2323 0 253 185 99 49 chr3 11742817 11742898 -206294260 - MIR SINE MIR -117 145 61 315 0 0 0 chr3 11743153 11743188 -206293970 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 344 256 0 12 chr3 11743296 11743378 -206293780 - MER58A DNA MER1_type -26 81 1 272 287 52 59 chr3 11744673 11744809 -206292349 - MIR3 SINE MIR -62 146 12 1081 188 43 4 chr3 11745344 11745578 -206291580 + L1MB3 LINE L1 5939 6181 -2 203 324 54 27 chr3 11745661 11745809 -206291349 + L2 LINE L2 2678 2829 -485 267 239 14 14 chr3 11745923 11745994 -206291164 + GA-rich Low_complexity Low_complexity 4 74 0 221 350 82 21 chr3 11746558 11746655 -206290503 + L2 LINE L2 3124 3226 -46 431 303 236 12 chr3 11747618 11747872 -206289286 + L3 LINE CR1 1187 1497 -80 345 333 122 24 chr3 11748461 11748674 -206288484 - MIR SINE MIR -6 256 23 600 290 0 7 chr3 11749173 11749318 -206287840 - MIR3 SINE MIR -63 145 2 212 261 46 0 chr3 11750322 11750387 -206286771 - MIR SINE MIR -69 193 126 184 286 0 0 chr3 11752243 11752285 -206284873 + L2 LINE L2 3264 3305 -8 203 281 47 31 chr3 11752488 11752552 -206284606 + L3 LINE CR1 1219 1283 -294 619 152 29 0 chr3 11752800 11752905 -206284253 + ERVL LTR ERVL 3720 3827 -1937 537 259 96 18 chr3 11753437 11753603 -206283555 - MIR SINE MIR -56 206 28 601 266 31 35 chr3 11754328 11754557 -206282601 + LTR16A LTR ERVL 223 450 0 1393 271 143 37 chr3 11754669 11755762 -206281396 + L2 LINE L2 2087 3313 0 441 272 72 8 chr3 11756669 11756794 -206280364 - MIR3 SINE MIR -33 175 43 195 175 50 0 chr3 11756824 11756864 -206280294 - MIR SINE MIR -84 124 83 477 298 32 50 chr3 11758017 11758235 -206278923 + L2 LINE L2 2935 3148 -124 225 227 15 45 chr3 11758512 11758578 -206278580 - L3 LINE CR1 -5 1572 1509 668 241 28 77 chr3 11759028 11759314 -206277844 - L1ME3A LINE L1 0 6170 5899 1546 202 35 26 chr3 11759314 11759656 -206277502 - MLT1A2 LTR MaLR 0 374 30 511 269 96 40 chr3 11759666 11759915 -206277243 - L1MC4a LINE L1 -1919 5889 5627 198 143 0 0 chr3 11761470 11761505 -206275653 + (GA)n Simple_repeat Simple_repeat 2 36 0 241 278 134 0 chr3 11761896 11761993 -206275165 - L2 LINE L2 -7 3265 3156 754 235 12 6 chr3 11762017 11762179 -206274979 - MIR SINE MIR -65 197 35 1871 137 0 17 chr3 11762226 11762547 -206274611 - AluSx SINE Alu 0 312 1 189 247 0 82 chr3 11762739 11762824 -206274334 - L2 LINE L2 -67 3205 3128 230 241 98 60 chr3 11762884 11763017 -206274141 - L2 LINE L2 -169 3103 2966 213 216 0 0 chr3 11763078 11763115 -206274043 + polypurine Low_complexity Low_complexity 2 38 0 469 271 119 19 chr3 11763397 11763607 -206273551 + MIR SINE MIR 20 250 -12 180 0 0 0 chr3 11764217 11764237 -206272921 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 703 283 64 21 chr3 11764264 11764497 -206272661 - MIR SINE MIR 0 262 20 218 241 55 76 chr3 11764730 11764875 -206272283 + L2 LINE L2 2966 3107 -165 187 133 44 0 chr3 11765053 11765098 -206272060 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 216 368 47 0 chr3 11765236 11765342 -206271816 - L2 LINE L2 -208 3064 2954 464 294 134 24 chr3 11765499 11765732 -206271426 - LTR33 LTR ERVL -92 429 156 3490 105 85 11 chr3 11765732 11766286 -206270872 + LTR61 LTR ERV1 1 595 0 464 294 134 24 chr3 11766286 11766344 -206270814 - LTR33 LTR ERVL -365 156 106 191 277 34 74 chr3 11766551 11766699 -206270459 + L2 LINE L2 2894 3035 -237 1935 190 72 27 chr3 11766863 11767154 -206270004 - LTR40b LTR ERVL 0 462 143 1918 171 48 14 chr3 11767154 11767505 -206269653 + THE1B LTR MaLR 2 364 0 1935 190 72 27 chr3 11767505 11767655 -206269503 - LTR40b LTR ERVL -319 143 1 308 287 11 0 chr3 11767820 11767907 -206269251 + MIR SINE MIR 127 214 -48 350 312 81 41 chr3 11768465 11768686 -206268472 - MIR SINE MIR -31 231 2 310 326 56 14 chr3 11769955 11770099 -206267059 - MIR3 SINE MIR -56 152 3 410 276 14 35 chr3 11770554 11770699 -206266459 + GA-rich Low_complexity Low_complexity 2 143 0 235 258 137 16 chr3 11771769 11771893 -206265265 - LTR16A1 LTR ERVL 0 457 319 2290 166 19 26 chr3 11771918 11772335 -206264823 - MER21A LTR ERV1 -3 928 515 2656 170 18 13 chr3 11772364 11772865 -206264293 - MER41B LTR ERV1 -12 571 100 250 133 27 0 chr3 11772892 11772934 -206264224 - MER41C LTR ERV1 -591 44 1 1691 181 131 0 chr3 11772934 11773271 -206263887 - MER21B LTR ERV1 -482 381 1 237 152 0 22 chr3 11773356 11773402 -206263756 + Alu SINE Alu 122 166 -9 29 47 0 0 chr3 11773402 11773445 -206263713 + AT_rich Low_complexity Low_complexity 1 43 0 370 202 10 19 chr3 11774306 11774410 -206262748 + GA-rich Low_complexity Low_complexity 4 106 0 2585 225 76 25 chr3 11774576 11775382 -206261776 + L1MC4a LINE L1 6844 7690 -118 1678 122 0 0 chr3 11775385 11775623 -206261535 + HERVE LTR ERV1 987 1224 -6589 2254 215 150 24 chr3 11775623 11778383 -206258775 - SATR1 Satellite Satellite -1 3107 1 23 0 0 0 chr3 11778474 11778497 -206258661 + AT_rich Low_complexity Low_complexity 1 23 0 19349 102 13 9 chr3 11778730 11781459 -206255699 + HERVE LTR ERV1 1108 3846 -3967 1497 223 92 37 chr3 11781470 11782129 -206255029 - SATR1 Satellite Satellite -1 695 1 4521 79 2 13 chr3 11782578 11783183 -206253975 + HERVE LTR ERV1 3249 3846 -3967 1462 255 101 56 chr3 11783254 11784137 -206253021 - SATR1 Satellite Satellite -20 922 1 4392 92 3 8 chr3 11784201 11784802 -206252356 + HERVE LTR ERV1 3249 3846 -3967 1418 240 105 70 chr3 11784866 11785760 -206251398 - SATR1 Satellite Satellite -20 925 1 13787 94 12 19 chr3 11786387 11788324 -206248834 + HERVE LTR ERV1 3249 5172 -2641 2385 169 112 6 chr3 11788324 11789936 -206247222 - SATR1 Satellite Satellite -3 1782 1 1902 175 96 75 chr3 11789969 11790611 -206246547 - SATR1 Satellite Satellite -2 655 1 547 262 169 62 chr3 11790648 11790938 -206246220 - SATR1 Satellite Satellite -2 468 148 1352 176 239 24 chr3 11790952 11791332 -206245826 - SATR1 Satellite Satellite -2 468 7 1007 197 289 22 chr3 11791355 11791813 -206245345 - SATR1 Satellite Satellite -1 580 1 1410 104 23 14 chr3 11791817 11792037 -206245121 - AluSq SINE Alu -91 222 1 771 227 40 0 chr3 11793931 11794129 -206243029 + MER6B DNA MER2_type 5 210 0 389 228 97 9 chr3 11794233 11794347 -206242811 - MER5B DNA MER1_type -5 173 50 180 0 0 0 chr3 11794347 11794367 -206242791 + (T)n Simple_repeat Simple_repeat 1 20 0 1672 127 6 83 chr3 11794541 11794880 -206242278 - AluSp SINE Alu 0 313 1 283 210 133 63 chr3 11794885 11795028 -206242130 - HsTC2 DNA Tc2 -115 1783 1631 1378 202 3 82 chr3 11795070 11795253 -206241905 + L1MA4 LINE L1 5771 5908 -392 1624 167 0 4 chr3 11795253 11795534 -206241624 + AluSx SINE Alu 1 280 -32 1378 202 3 82 chr3 11795534 11795741 -206241417 + L1MA4 LINE L1 5908 6130 -170 1996 120 3 3 chr3 11795821 11796129 -206241029 - AluSp SINE Alu -5 308 1 3011 232 25 44 chr3 11796167 11797164 -206239994 + L1MB3 LINE L1 4818 5832 -351 1778 139 0 4 chr3 11797164 11797438 -206239720 + AluSx SINE Alu 7 279 -33 192 111 0 0 chr3 11797444 11797480 -206239678 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3011 232 25 44 chr3 11797480 11797585 -206239573 + L1MB3 LINE L1 5837 5942 -241 1937 145 0 0 chr3 11797585 11797889 -206239269 + AluSx SINE Alu 1 304 -8 3011 232 25 44 chr3 11797889 11798139 -206239019 + L1MB3 LINE L1 5942 6153 -30 977 214 241 58 chr3 11798501 11799304 -206237854 - SATR1 Satellite Satellite -2 949 1 957 227 330 9 chr3 11799343 11800012 -206237146 - SATR1 Satellite Satellite -1 883 1 1229 227 244 29 chr3 11800097 11800668 -206236490 + SATR1 Satellite Satellite 1 693 -10 261 214 48 71 chr3 11800685 11800769 -206236389 - SATR1 Satellite Satellite -47 423 342 1117 234 209 45 chr3 11800797 11801713 -206235445 - SATR1 Satellite Satellite -7 1066 1 933 223 256 48 chr3 11801737 11802405 -206234753 - SATR1 Satellite Satellite -1 807 1 740 240 318 3 chr3 11802434 11802780 -206234378 - SATR1 Satellite Satellite -4 466 12 1195 220 227 26 chr3 11802811 11805033 -206232125 - SATR1 Satellite Satellite -2 2667 1 1046 219 261 10 chr3 11805070 11806195 -206230963 - SATR1 Satellite Satellite -99 1407 1 513 268 298 7 chr3 11806224 11806496 -206230662 - SATR1 Satellite Satellite -95 375 25 466 198 129 106 chr3 11806570 11806787 -206230371 - SATR1 Satellite Satellite -106 364 143 595 262 64 0 chr3 11807100 11807272 -206229886 - LTR16C LTR ERVL -36 455 273 271 346 13 0 chr3 11807367 11807445 -206229713 + MIR SINE MIR 154 232 -30 210 260 13 39 chr3 11808140 11808217 -206228941 - MIR SINE MIR -168 94 20 246 236 37 143 chr3 11808273 11808434 -206228724 - MIR SINE MIR -10 252 109 360 353 29 0 chr3 11808541 11808677 -206228481 - L1ME4a LINE L1 0 6121 5982 462 271 188 1 chr3 11808677 11808911 -206228247 + Charlie8 DNA MER1_type 1 265 -2152 317 287 221 11 chr3 11808988 11809169 -206227989 - L1ME4a LINE L1 -134 5987 5769 205 367 25 17 chr3 11810081 11810201 -206226957 - MIR3 SINE MIR -84 124 4 221 282 27 64 chr3 11810406 11810516 -206226642 + MIR SINE MIR 91 196 -66 217 309 85 32 chr3 11811005 11811099 -206226059 - MIR SINE MIR -74 134 36 349 261 148 61 chr3 11812401 11812945 -206224213 + L1ME4a LINE L1 5303 5885 -236 210 289 0 19 chr3 11813113 11813165 -206223993 + C-rich Low_complexity Low_complexity 5 55 0 284 320 45 22 chr3 11813563 11813741 -206223417 - MIR SINE MIR -60 202 21 879 199 35 0 chr3 11813873 11814044 -206223114 - MER5A DNA MER1_type -6 183 7 215 260 0 0 chr3 11814750 11814800 -206222358 - L2 LINE L2 -3 3310 3261 303 302 65 14 chr3 11815446 11815585 -206221573 + MIR SINE MIR 20 165 -97 995 251 39 4 chr3 11815606 11815837 -206221321 + MIR SINE MIR 21 259 -3 1227 215 113 26 chr3 11816298 11816642 -206220516 + MLT1A2 LTR MaLR 1 374 0 229 211 84 42 chr3 11817120 11817191 -206219967 + MER5A DNA MER1_type 40 113 -76 906 195 123 0 chr3 11818029 11818224 -206218934 - MER20 DNA MER1_type 0 219 1 1085 249 127 44 chr3 11818433 11818883 -206218275 - LTR16C LTR ERVL -2 489 3 326 281 42 0 chr3 11819309 11819405 -206217753 + MIR SINE MIR 64 163 -99 232 324 0 0 chr3 11820034 11820105 -206217053 + MIR SINE MIR 54 124 -138 1264 195 23 36 chr3 11820284 11820587 -206216571 + AluJo SINE Alu 1 299 -13 30516 35 14 1 chr3 11820589 11826644 -206210514 + L1PA3 LINE L1 1 6188 0 278 67 156 0 chr3 11826660 11826705 -206210453 + MSTA LTR MaLR 3 54 -374 2183 121 81 14 chr3 11826750 11827121 -206210037 + MSTA LTR MaLR 31 426 -2 601 231 77 24 chr3 11827146 11827315 -206209843 - MIR SINE MIR -36 226 49 272 320 0 0 chr3 11827838 11827913 -206209245 - L2 LINE L2 0 3313 3239 1783 158 0 73 chr3 11828430 11828747 -206208411 + AluJb SINE Alu 1 294 -18 577 207 82 15 chr3 11829759 11829894 -206207264 - MER5B DNA MER1_type 0 178 35 2457 84 0 22 chr3 11830059 11830370 -206206788 - AluSx SINE Alu -8 304 1 275 239 294 9 chr3 11830560 11830669 -206206489 - MIR SINE MIR -105 157 18 991 178 213 0 chr3 11831097 11831327 -206205831 + MLT1D LTR MaLR 227 505 0 1346 178 157 78 chr3 11831352 11831568 -206205590 - MLT1C LTR MaLR 0 467 269 405 39 0 0 chr3 11831568 11831619 -206205539 + (TG)n Simple_repeat Simple_repeat 2 52 0 1346 178 157 78 chr3 11831619 11831835 -206205323 - MLT1C LTR MaLR -198 269 1 300 301 140 0 chr3 11832181 11832317 -206204841 + L2 LINE L2 3109 3263 -9 815 174 5 102 chr3 11833325 11833521 -206203637 + MER58A DNA MER1_type 4 180 -44 194 400 67 0 chr3 11833736 11833826 -206203332 - L3 LINE CR1 -111 1466 1371 750 281 139 29 chr3 11833910 11834255 -206202903 - L3 LINE CR1 -237 1340 958 215 288 61 0 chr3 11834305 11834371 -206202787 - MIR SINE MIR -63 145 76 238 247 233 14 chr3 11834411 11834484 -206202674 + MIR3 SINE MIR 111 199 -9 900 255 152 14 chr3 11835558 11835948 -206201210 - MLT1G3 LTR MaLR 0 530 75 417 294 83 73 chr3 11836409 11836736 -206200422 + MLT1J LTR MaLR 156 485 -26 273 378 60 4 chr3 11836780 11837013 -206200145 + L2 LINE L2 2637 2882 -432 229 276 56 140 chr3 11837090 11837340 -206199818 + L2 LINE L2 2992 3220 -52 455 186 41 0 chr3 11837869 11837966 -206199192 - MIR SINE MIR -58 150 50 1820 152 28 0 chr3 11839232 11839522 -206197636 - AluJb SINE Alu -14 298 1 223 308 44 11 chr3 11839547 11839638 -206197520 + MER5A DNA MER1_type 7 100 -89 1476 203 51 8 chr3 11839656 11840026 -206197132 - MER3 DNA MER1_type 0 2624 2239 357 188 208 0 chr3 11840027 11840123 -206197035 - MER3 DNA MER1_type -41 168 53 502 238 38 31 chr3 11840266 11840426 -206196732 + L2 LINE L2 2938 3098 -174 241 330 71 4 chr3 11840642 11840775 -206196383 + MIR SINE MIR 16 151 -63 203 279 0 16 chr3 11840843 11840904 -206196254 + MIR SINE MIR 178 237 -25 232 286 0 0 chr3 11841591 11841647 -206195511 + GA-rich Low_complexity Low_complexity 5 60 0 355 300 25 33 chr3 11841754 11841874 -206195284 + MIR3 SINE MIR 7 125 -83 276 313 21 0 chr3 11842176 11842272 -206194886 - L2 LINE L2 -3 3269 3172 583 51 59 8 chr3 11842483 11842601 -206194557 + CT-rich Low_complexity Low_complexity 2 125 0 269 256 24 12 chr3 11843250 11843332 -206193826 - MER117 DNA MER1_type 0 197 115 257 284 0 15 chr3 11843730 11843797 -206193361 - MER5A DNA MER1_type -37 152 87 2153 121 0 20 chr3 11843842 11844147 -206193011 + AluSq SINE Alu 1 299 -14 737 208 72 47 chr3 11844252 11844521 -206192637 - MLT1F1 LTR MaLR 0 567 294 530 231 42 17 chr3 11844658 11844858 -206192300 - MLT1H LTR MaLR -321 234 18 856 190 183 11 chr3 11845657 11845931 -206191227 - MER5C DNA MER1_type 0 324 4 203 360 12 12 chr3 11846065 11846151 -206191007 - MIR SINE MIR -71 137 52 210 143 0 0 chr3 11846871 11846906 -206190252 + (GAA)n Simple_repeat Simple_repeat 2 36 0 479 202 9 0 chr3 11847234 11847348 -206189810 + (TGGA)n Simple_repeat Simple_repeat 1 115 0 2743 116 47 2 chr3 11847351 11847758 -206189400 - MSTB LTR MaLR -1 425 1 1562 80 0 80 chr3 11848789 11849014 -206188144 - AluY SINE Alu -9 302 96 305 307 53 9 chr3 11849039 11849153 -206188005 - MIR SINE MIR -71 191 73 226 196 43 0 chr3 11849319 11849365 -206187793 + MIR SINE MIR 64 111 -97 529 250 12 50 chr3 11849398 11849503 -206187655 + MER5A DNA MER1_type 17 116 -73 2148 175 61 19 chr3 11849503 11849914 -206187244 + MSTA LTR MaLR 1 428 0 529 250 12 50 chr3 11849914 11849968 -206187190 + MER5A DNA MER1_type 116 170 -19 198 0 0 0 chr3 11851311 11851333 -206185825 + (CA)n Simple_repeat Simple_repeat 1 22 0 438 189 148 8 chr3 11851438 11851560 -206185598 - MER103 DNA DNA -19 147 9 181 345 0 83 chr3 11851686 11851770 -206185388 + MIR3 SINE MIR 3 79 -129 294 293 143 34 chr3 11852055 11852202 -206184956 - MIR3 SINE MIR -45 163 1 306 311 95 20 chr3 11852630 11852778 -206184380 - MER5A DNA MER1_type -29 160 2 181 292 69 14 chr3 11853852 11853924 -206183234 - MER5A DNA MER1_type -105 84 9 5369 177 39 3 chr3 11854937 11856747 -206180411 - L1MB7 LINE L1 -54 6130 4239 267 31 0 0 chr3 11856747 11856779 -206180379 + (TG)n Simple_repeat Simple_repeat 1 32 0 5369 177 39 3 chr3 11856779 11856875 -206180283 - L1MB7 LINE L1 -1945 4239 4148 366 250 207 36 chr3 11858168 11858308 -206178850 + MIR SINE MIR 98 261 -1 285 359 65 5 chr3 11858372 11858556 -206178602 - L2 LINE L2 -174 3098 2904 652 169 214 0 chr3 11859191 11859345 -206177813 + MER5A DNA MER1_type 2 188 -1 192 312 56 69 chr3 11860369 11860600 -206176558 - L2 LINE L2 -366 2948 2721 395 208 0 0 chr3 11860841 11860913 -206176245 - MIR SINE MIR -62 146 75 312 275 20 7 chr3 11861174 11861375 -206175783 + LTR16A LTR ERVL 51 283 -167 327 270 131 64 chr3 11861547 11861794 -206175364 + MIR SINE MIR 1 262 0 24 32 0 0 chr3 11861802 11861833 -206175325 + AT_rich Low_complexity Low_complexity 1 31 0 350 216 9 95 chr3 11863472 11863588 -206173570 + MER5A DNA MER1_type 4 109 -80 207 308 39 39 chr3 11863704 11863808 -206173350 + L2 LINE L2 2959 3062 -210 468 256 40 8 chr3 11865098 11865223 -206171935 - MER91C DNA MER1_type -3 137 9 955 200 4 74 chr3 11865447 11865677 -206171481 + MER20 DNA MER1_type 1 214 -5 511 291 113 5 chr3 11866050 11866263 -206170895 + MIR SINE MIR 27 262 0 199 291 0 38 chr3 11866335 11866414 -206170744 - MIR SINE MIR -113 149 74 217 294 0 0 chr3 11867601 11867652 -206169506 - L2 LINE L2 -71 3201 3151 338 289 29 10 chr3 11867791 11867895 -206169263 - MIR SINE MIR -72 190 85 203 184 0 0 chr3 11868383 11868421 -206168737 + (TTA)n Simple_repeat Simple_repeat 3 40 0 228 317 91 33 chr3 11869950 11870072 -206167086 - MIR SINE MIR -57 151 22 325 197 13 0 chr3 11870262 11870338 -206166820 + MIR SINE MIR 63 139 -69 439 309 42 24 chr3 11871489 11871657 -206165501 - MIR SINE MIR -36 226 56 21 0 0 0 chr3 11872634 11872655 -206164503 + GC_rich Low_complexity Low_complexity 1 21 0 333 262 47 121 chr3 11873633 11873931 -206163227 + L1M2 LINE L1 755 1030 -5819 481 208 42 33 chr3 11875071 11875191 -206161967 + MIR3 SINE MIR 86 206 -2 651 75 0 0 chr3 11875713 11875793 -206161365 - MADE1 DNA Mariner 0 80 1 1006 207 122 44 chr3 11876040 11876359 -206160799 - MER2 DNA MER2_type 0 344 1 228 128 0 64 chr3 11876559 11876606 -206160552 - MER113 DNA MER1_type? -465 56 13 2030 167 51 20 chr3 11876805 11877195 -206159963 - MLT2D LTR ERVL -12 402 1 2906 78 32 0 chr3 11877257 11877631 -206159527 - L1PA10 LINE L1 0 6168 5783 315 195 12 49 chr3 11877632 11877714 -206159444 - L1MC4 LINE L1 -1350 6692 6614 348 96 30 0 chr3 11877715 11877853 -206159305 + (TA)n Simple_repeat Simple_repeat 1 142 0 3638 81 8 0 chr3 11877862 11878345 -206158813 - L1P4 LINE L1 -392 5776 5290 202 121 30 0 chr3 11879496 11879529 -206157629 + L2 LINE L2 3028 3061 -252 463 222 19 9 chr3 11880204 11880312 -206156846 - MIR SINE MIR -80 182 74 222 284 318 5 chr3 11880311 11880522 -206156636 - L2 LINE L2 -420 2894 2618 * 2206 104 0 3 chr3 11880527 11880815 -206156343 + AluSc SINE Alu 7 293 -16 195 250 29 59 chr3 11880891 11880959 -206156199 - MIR SINE MIR -106 102 37 558 204 53 18 chr3 11881615 11881775 -206155383 + MIR3 SINE MIR 44 208 0 256 261 29 0 chr3 11881831 11881900 -206155258 + L2 LINE L2 3243 3313 0 301 260 24 81 chr3 11882023 11882146 -206155012 + L1MC/D LINE L1 5522 5637 -2171 274 235 304 0 chr3 11883462 11883564 -206153594 - MIR3 SINE MIR -65 143 11 266 302 43 52 chr3 11883807 11883923 -206153235 + MIR SINE MIR 35 149 -113 939 229 70 180 chr3 11883949 11884604 -206152554 - MLT1G1 LTR MaLR -2 593 11 197 256 0 23 chr3 11884650 11884693 -206152465 + MIR SINE MIR 220 261 -1 2339 229 30 33 chr3 11885120 11885761 -206151397 + L1MA9 LINE L1 2379 3017 -3129 192 185 19 37 chr3 11885770 11885878 -206151280 + (TA)n Simple_repeat Simple_repeat 1 106 0 317 218 81 35 chr3 11885880 11885967 -206151191 - L1MC4 LINE L1 -1336 6706 6616 6129 166 56 14 chr3 11885983 11887066 -206150092 + L1MA9 LINE L1 4127 5163 -1149 333 0 0 0 chr3 11887066 11887103 -206150055 + (CA)n Simple_repeat Simple_repeat 2 38 0 6129 166 56 14 chr3 11887103 11888061 -206149097 + L1MA9 LINE L1 5163 6302 -10 292 192 151 0 chr3 11888097 11888170 -206148988 - MER45 DNA AcHobo -94 84 1 254 330 146 32 chr3 11888178 11888487 -206148671 + L2 LINE L2 2475 2818 -496 209 288 45 30 chr3 11888706 11888772 -206148386 + L2 LINE L2 3167 3233 -39 303 259 0 56 chr3 11889860 11889968 -206147190 - MIR SINE MIR -51 211 110 482 303 142 0 chr3 11889999 11890161 -206146997 - MIR SINE MIR -15 247 63 1084 94 0 50 chr3 11890161 11890320 -206146838 + AluSq/x SINE Alu 1 151 -162 536 67 0 53 chr3 11890324 11890399 -206146759 - AluSq/x SINE Alu -180 133 63 1409 170 111 23 chr3 11890400 11890706 -206146452 + MLT1D LTR MaLR 127 459 -46 13474 182 47 22 chr3 11890761 11892800 -206144358 - L1MB7 LINE L1 -120 6064 4076 254 95 24 0 chr3 11892800 11892842 -206144316 + (TG)n Simple_repeat Simple_repeat 2 44 0 13474 182 47 22 chr3 11892842 11894418 -206142740 - L1MB7 LINE L1 -2108 4076 2348 1416 225 14 0 chr3 11894418 11894703 -206142455 + AluJo SINE Alu 1 289 -23 13474 182 47 22 chr3 11894703 11894859 -206142299 - L1MB7 LINE L1 -3836 2348 2197 468 207 18 9 chr3 11894862 11894973 -206142185 - Charlie1a DNA MER1_type -1299 156 45 225 300 45 18 chr3 11895215 11895325 -206141833 - MLT1H LTR MaLR -405 144 32 216 259 129 0 chr3 11895356 11895441 -206141717 - L2 LINE L2 -656 2658 2563 2225 110 3 0 chr3 11895792 11896077 -206141081 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr3 11896077 11896099 -206141059 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 2225 110 3 0 chr3 11896099 11896113 -206141045 + AluSx SINE Alu 289 301 -11 227 111 0 22 chr3 11896282 11896327 -206140831 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 262 247 305 26 chr3 11896494 11896648 -206140510 + MIR SINE MIR 56 252 -10 203 306 14 0 chr3 11897325 11897397 -206139761 + MIR SINE MIR 58 130 -78 2296 82 16 7 chr3 11898144 11898448 -206138710 + AluY SINE Alu 1 307 -4 526 253 114 19 chr3 11898644 11898802 -206138356 + MER5A DNA MER1_type 9 181 -8 482 321 173 23 chr3 11898866 11899360 -206137798 - L2 LINE L2 -20 3293 2714 283 270 116 7 chr3 11899377 11899543 -206137615 - MLT1G LTR MaLR -45 545 322 1078 284 129 41 chr3 11899641 11900331 -206136827 - L2 LINE L2 -593 2721 1971 536 266 199 23 chr3 11900344 11900686 -206136472 - L2 LINE L2 -1612 1702 1301 3885 98 17 42 chr3 11900862 11901097 -206136061 + L1PB1 LINE L1 5576 5815 -336 366 23 0 0 chr3 11901097 11901140 -206136018 + (CA)n Simple_repeat Simple_repeat 2 44 0 3885 98 17 42 chr3 11901140 11901495 -206135663 + L1PB1 LINE L1 5815 6151 0 435 314 78 49 chr3 11901859 11902104 -206135054 + MIR SINE MIR 11 262 0 2236 110 3 0 chr3 11902202 11902501 -206134657 - AluSg SINE Alu -10 300 1 618 193 36 153 chr3 11902551 11902800 -206134358 + L1MC5 LINE L1 6928 7147 -814 267 289 111 22 chr3 11903313 11903448 -206133710 + MER117 DNA MER1_type 1 147 -50 408 20 0 0 chr3 11903453 11903502 -206133656 + (TG)n Simple_repeat Simple_repeat 1 49 0 2361 64 10 7 chr3 11903708 11904005 -206133153 + AluY SINE Alu 1 298 -13 270 0 0 0 chr3 11904103 11904133 -206133025 + (TG)n Simple_repeat Simple_repeat 1 30 0 673 323 16 22 chr3 11904169 11904485 -206132673 + L1MC1 LINE L1 95 408 -6015 743 261 124 8 chr3 11904644 11904878 -206132280 + MER21B LTR ERV1 17 277 -586 2434 272 58 51 chr3 11904911 11906411 -206130747 + L1MC1 LINE L1 1128 2872 -4250 315 0 0 0 chr3 11906411 11906446 -206130712 + (CA)n Simple_repeat Simple_repeat 2 36 0 2434 272 58 51 chr3 11906446 11906545 -206130613 + L1MC1 LINE L1 2872 2969 -4153 402 21 0 0 chr3 11906551 11906598 -206130560 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 402 207 0 58 chr3 11906615 11906702 -206130456 + L1MC1 LINE L1 4570 4651 -2290 2498 206 62 9 chr3 11906703 11907233 -206129925 - MLT1F1 LTR MaLR 0 567 10 958 183 65 5 chr3 11907254 11907440 -206129718 + MER20 DNA MER1_type 1 197 -22 240 125 42 0 chr3 11907440 11907488 -206129670 + L1MC1 LINE L1 4691 4740 -2201 881 9 37 0 chr3 11907508 11907616 -206129542 - L1P LINE L1 -823 5323 5212 6134 160 29 20 chr3 11907872 11909494 -206127664 + L1MC1 LINE L1 5492 7128 0 3037 176 86 96 chr3 11909510 11910881 -206126277 + L1MB8 LINE L1 4754 6967 -6 2144 241 23 18 chr3 11910885 11911488 -206125670 + L1ME2 LINE L1 4236 4841 -1305 1164 236 25 55 chr3 11911789 11911979 -206125179 + L1ME2 LINE L1 5814 5989 -175 1813 107 7 77 chr3 11911979 11912278 -206124880 + AluSx SINE Alu 15 292 -20 1164 236 25 55 chr3 11912278 11912448 -206124710 + L1ME2 LINE L1 5989 6163 -1 801 212 22 36 chr3 11912469 11912691 -206124467 + L1ME3 LINE L1 5944 6162 0 294 276 97 37 chr3 11914305 11914439 -206122719 + MIR SINE MIR 54 195 -67 1841 158 20 3 chr3 11914767 11915071 -206122087 + AluSx SINE Alu 1 309 -3 435 224 245 14 chr3 11915204 11915351 -206121807 + MIR SINE MIR 12 192 -70 305 264 46 0 chr3 11915682 11915769 -206121389 + MIR SINE MIR 92 182 -80 2475 59 7 3 chr3 11917600 11917904 -206119254 + AluY SINE Alu 1 305 -6 248 301 76 60 chr3 11918648 11918897 -206118261 + L2 LINE L2 2151 2403 -911 210 303 256 5 chr3 11918941 11919136 -206118022 + L2 LINE L2 2514 2757 -557 256 278 140 78 chr3 11919190 11919396 -206117762 + L2 LINE L2 2826 3018 -254 1662 226 110 26 chr3 11919396 11919861 -206117297 + MLT1D LTR MaLR 2 505 0 256 278 140 78 chr3 11919861 11920075 -206117083 + L2 LINE L2 3018 3272 0 257 287 11 11 chr3 11920275 11920362 -206116796 - MER5A DNA MER1_type -14 175 89 258 301 257 10 chr3 11921739 11921945 -206115213 + MIR SINE MIR 6 262 0 334 331 0 14 chr3 11922313 11922461 -206114697 - MIR3 SINE MIR -39 169 24 396 218 160 58 chr3 11922684 11922890 -206114268 + L2 LINE L2 3082 3308 -5 343 311 75 66 chr3 11923879 11924213 -206112945 + MLT1H-int LTR MaLR 1011 1347 -24 729 232 221 79 chr3 11924251 11924421 -206112737 + MLT1H LTR MaLR 18 163 -386 1569 182 67 12 chr3 11924421 11924767 -206112391 - MLT1A1 LTR MaLR 0 365 1 729 232 221 79 chr3 11924767 11925062 -206112096 + MLT1H LTR MaLR 163 549 0 627 291 13 0 chr3 11925392 11925543 -206111615 - MIR3 SINE MIR -48 160 8 183 272 65 33 chr3 11925747 11925839 -206111319 + L2 LINE L2 2944 3038 -234 237 345 90 23 chr3 11925904 11926081 -206111077 + L2 LINE L2 2701 2889 -425 275 250 12 12 chr3 11926341 11926421 -206110737 + L2 LINE L2 3193 3272 0 189 195 0 0 chr3 11926479 11926520 -206110638 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 214 268 56 14 chr3 11927183 11927254 -206109904 - L2 LINE L2 -8 3264 3191 1948 266 96 54 chr3 11927396 11928363 -206108795 + L1ME2 LINE L1 3879 4804 -1342 975 256 96 37 chr3 11928363 11928855 -206108303 + LTR33 LTR ERVL 1 521 0 1948 266 96 54 chr3 11928855 11929195 -206107963 + L1ME2 LINE L1 4804 5128 -1018 904 143 52 81 chr3 11929195 11929245 -206107913 - MER3 DNA MER1_type -4 205 155 2043 127 3 7 chr3 11929245 11929537 -206107621 + AluSq SINE Alu 1 291 -22 904 143 52 81 chr3 11929537 11929696 -206107462 - MER3 DNA MER1_type -54 155 2 1948 266 96 54 chr3 11929696 11929754 -206107404 + L1ME2 LINE L1 5128 5182 -964 2324 177 115 13 chr3 11929754 11930222 -206106936 + MLT2B1 LTR ERVL 5 520 0 1948 266 96 54 chr3 11930222 11930276 -206106882 + L1ME2 LINE L1 5182 5360 -786 524 288 139 24 chr3 11930382 11930799 -206106359 + L1ME2 LINE L1 5487 5951 -213 892 66 0 25 chr3 11931017 11931139 -206106019 - AluY SINE Alu 0 311 193 35 0 0 0 chr3 11931382 11931417 -206105741 + AT_rich Low_complexity Low_complexity 1 35 0 720 232 110 57 chr3 11931645 11931999 -206105159 + L1ME3A LINE L1 3825 4197 -1949 772 167 0 0 chr3 11932011 11932143 -206105015 + AluSq/x SINE Alu 2 133 -180 841 163 105 77 chr3 11932209 11932418 -206104740 + MER20 DNA MER1_type 4 218 -1 2170 137 8 42 chr3 11932454 11932833 -206104325 + MER47A DNA MER2_type 1 366 0 3189 230 75 18 chr3 11932833 11933939 -206103219 + L1ME3A LINE L1 5003 6170 0 948 271 165 12 chr3 11933936 11934589 -206102569 + L1ME LINE L1 3095 3847 -2299 * 1695 247 125 72 chr3 11934633 11934784 -206102374 + L1ME LINE L1 4052 4194 -1952 1738 158 29 35 chr3 11934784 11935095 -206102063 + AluSx SINE Alu 1 309 -3 1695 247 125 72 chr3 11935095 11935357 -206101801 + L1ME LINE L1 4194 4441 -1705 1526 159 46 32 chr3 11935357 11935640 -206101518 + AluJb SINE Alu 1 287 -25 213 39 0 0 chr3 11935642 11935668 -206101490 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1695 247 125 72 chr3 11935668 11935811 -206101347 + L1ME LINE L1 4441 4575 -1571 417 39 0 0 chr3 11935811 11935862 -206101296 + (TG)n Simple_repeat Simple_repeat 1 51 0 1695 247 125 72 chr3 11935862 11936238 -206100920 + L1ME LINE L1 4575 4930 -1216 914 150 56 94 chr3 11936238 11936451 -206100707 - MER3 DNA MER1_type 0 209 5 1695 247 125 72 chr3 11936451 11936463 -206100695 + L1ME LINE L1 4930 4940 -1206 1109 176 88 0 chr3 11936463 11936667 -206100491 + MER58A DNA MER1_type 1 222 -2 1695 247 125 72 chr3 11936667 11936997 -206100161 + L1ME LINE L1 4940 5400 -746 4998 173 44 33 chr3 11936997 11937210 -206099948 + L1MC2 LINE L1 4552 4761 -1583 1741 163 61 0 chr3 11937210 11937504 -206099654 + AluJb SINE Alu 1 312 0 4998 173 44 33 chr3 11937504 11939015 -206098143 + L1MC2 LINE L1 4761 6289 -55 2165 101 37 17 chr3 11939016 11939314 -206097844 - AluSx SINE Alu -7 305 2 872 271 58 27 chr3 11939328 11939656 -206097502 + L1ME LINE L1 5387 5724 -446 217 254 51 0 chr3 11939665 11939724 -206097434 + MIR SINE MIR 128 189 -73 348 280 128 45 chr3 11939853 11940253 -206096905 - LTR67 LTR ERVL -24 533 101 1369 139 42 0 chr3 11941169 11941384 -206095774 - AluJb SINE Alu -4 308 85 228 311 39 19 chr3 11941516 11941619 -206095539 - MIR SINE MIR -74 188 84 988 258 135 43 chr3 11941631 11941952 -206095206 + MLT1H LTR MaLR 1 384 -165 2736 196 29 7 chr3 11941952 11942498 -206094660 - MER74A LTR ERVL 0 558 1 988 258 135 43 chr3 11942498 11942665 -206094493 + MLT1H LTR MaLR 384 534 -15 1755 151 49 3 chr3 11943108 11943392 -206093766 - AluJo SINE Alu -15 297 1 362 202 109 59 chr3 11943598 11943717 -206093441 + MIR SINE MIR 43 167 -41 487 252 8 8 chr3 11943846 11943969 -206093189 - MIR SINE MIR -108 154 32 2253 209 122 0 chr3 11944832 11945334 -206091824 - MER119 DNA MER1_type -18 565 3 457 228 198 25 chr3 11946807 11946969 -206090189 + MIR SINE MIR 32 221 -41 222 238 112 31 chr3 11947086 11947246 -206089912 - MER5A DNA MER1_type 0 189 1 2179 113 65 14 chr3 11947248 11947602 -206089556 + THE1C LTR MaLR 1 372 -3 388 291 0 27 chr3 11947682 11947830 -206089328 + MER5B DNA MER1_type 1 144 -34 241 233 17 0 chr3 11947833 11947893 -206089265 - MER5B DNA MER1_type -111 67 7 579 265 7 7 chr3 11948202 11948338 -206088820 + L2 LINE L2 3178 3313 0 1224 180 38 119 chr3 11949265 11949659 -206087499 + MLT1A1 LTR MaLR 4 365 0 181 383 49 0 chr3 11949740 11949821 -206087337 + L2 LINE L2 3138 3222 -50 659 281 107 8 chr3 11950622 11950875 -206086283 - MLT1L LTR MaLR -240 375 98 21 36 0 0 chr3 11951057 11951085 -206086073 + AT_rich Low_complexity Low_complexity 1 28 0 1077 251 109 29 chr3 11952081 11952495 -206084663 - MLT1L LTR MaLR -9 606 160 181 329 80 36 chr3 11952897 11953034 -206084124 + L2 LINE L2 3121 3263 -9 1233 207 68 54 chr3 11953641 11953993 -206083165 - MER31B LTR ERV1 0 466 110 389 95 0 0 chr3 11953996 11954059 -206083099 - L1MA7 LINE L1 0 6291 6229 1050 191 14 9 chr3 11954060 11954275 -206082883 - AluJo SINE Alu -10 302 87 2729 138 0 45 chr3 11954275 11954395 -206082763 - L1MA7 LINE L1 -51 6240 6116 1620 146 8 19 chr3 11954395 11954656 -206082502 - AluJo SINE Alu -13 299 42 2729 138 0 45 chr3 11954656 11955026 -206082132 - L1MA7 LINE L1 -175 6116 5772 300 111 0 0 chr3 11955026 11955071 -206082087 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 2194 110 20 0 chr3 11955073 11955374 -206081784 - AluSg SINE Alu -3 307 1 468 104 0 39 chr3 11955425 11955502 -206081656 - MER31B LTR ERV1 -392 74 1 569 262 17 29 chr3 11955657 11955829 -206081329 + MIR SINE MIR 20 189 -73 311 333 0 19 chr3 11956053 11956158 -206081000 + MER5B DNA MER1_type 31 133 -45 193 294 44 44 chr3 11956530 11956666 -206080492 - MIR3 SINE MIR -17 191 56 1622 271 96 7 chr3 11957588 11958130 -206079028 + MLT1E LTR MaLR 1 590 -3 330 267 40 0 chr3 11958250 11958351 -206078807 - MIR SINE MIR -119 143 39 456 243 0 0 chr3 11958548 11958655 -206078503 - MLT2F LTR ERVL -10 653 547 495 190 0 30 chr3 11958656 11958756 -206078402 + FLAM_A SINE Alu 40 136 -6 976 268 57 69 chr3 11958818 11959310 -206077848 - MLT2F LTR ERVL -161 502 17 472 285 74 53 chr3 11959653 11959937 -206077221 - L3 LINE CR1 -37 1540 1251 331 277 0 0 chr3 11959997 11960080 -206077078 - L1MD3 LINE L1 -787 7208 7126 234 278 287 0 chr3 11960080 11960195 -206076963 + MIR SINE MIR 115 262 0 402 159 0 0 chr3 11960422 11960485 -206076673 + FLAM_A SINE Alu 63 125 -8 25797 153 16 9 chr3 11960860 11963306 -206073852 + ERVL-B2 LTR ERVL 1627 4115 -1649 2259 117 0 10 chr3 11963306 11963613 -206073545 - AluSx SINE Alu -8 304 1 25797 153 16 9 chr3 11963613 11965272 -206071886 + ERVL-B2 LTR ERVL 4115 5761 -3 1955 189 109 22 chr3 11965274 11965686 -206071472 + MLT2B2 LTR ERVL 7 454 -61 437 97 14 0 chr3 11965689 11965761 -206071397 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 333 119 0 90 chr3 11965761 11965828 -206071330 + MLT2B3 LTR ERVL 458 552 -2 2366 251 29 40 chr3 11965864 11966580 -206070578 + L1MEc LINE L1 110 817 -5579 2112 106 0 0 chr3 11966583 11966856 -206070302 + AluSg SINE Alu 1 273 -37 645 311 34 8 chr3 11968616 11968854 -206068304 + LTR16B LTR ERVL 221 464 0 2205 117 7 7 chr3 11969838 11970147 -206067011 - AluSx SINE Alu -3 309 1 747 144 0 0 chr3 11970315 11970440 -206066718 + (TG)n Simple_repeat Simple_repeat 2 126 0 1919 205 82 23 chr3 11970817 11971291 -206065867 + MLT1D LTR MaLR 4 505 0 670 185 123 0 chr3 11971337 11971467 -206065691 + Tigger5 DNA MER2_type 2178 2323 0 377 327 117 30 chr3 11971551 11971918 -206065240 - L3 LINE CR1 -5 1572 1174 236 254 0 0 chr3 11972068 11972123 -206065035 + MIR3 SINE MIR 151 205 -3 693 278 134 35 chr3 11972504 11972625 -206064533 + L1MC4a LINE L1 5552 5660 -461 333 62 0 0 chr3 11972625 11972673 -206064485 + (CA)n Simple_repeat Simple_repeat 1 48 0 693 278 134 35 chr3 11972673 11973106 -206064052 + L1MC4a LINE L1 5660 5933 -188 200 342 40 13 chr3 11973251 11973327 -206063831 - MIR SINE MIR -63 145 68 337 281 11 0 chr3 11973404 11973493 -206063665 + MIR3 SINE MIR 83 172 -36 348 303 38 15 chr3 11974321 11974453 -206062705 - L2 LINE L2 -4 3268 3134 1207 297 55 27 chr3 11974480 11975060 -206062098 - L2 LINE L2 -5 3308 2746 253 0 0 0 chr3 11975060 11975088 -206062070 + (TTTTC)n Simple_repeat Simple_repeat 2 155 0 2339 46 0 3 chr3 11975088 11975372 -206061786 - AluY SINE Alu -28 283 1 1207 297 55 27 chr3 11975372 11975625 -206061533 - L2 LINE L2 -566 2747 2454 1740 98 39 11 chr3 11975629 11975810 -206061348 + L1M3 LINE L1 5291 5484 -687 291 28 0 0 chr3 11975810 11975846 -206061312 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1740 98 39 11 chr3 11975846 11975949 -206061209 + L1M3 LINE L1 5484 5583 -588 183 42 0 0 chr3 11976447 11976471 -206060687 + (TTG)n Simple_repeat Simple_repeat 2 25 0 598 207 106 28 chr3 11976628 11976807 -206060351 - L2 LINE L2 -864 2450 2258 535 302 60 30 chr3 11976845 11977176 -206059982 - L2 LINE L2 -938 2376 2036 322 222 146 58 chr3 11977181 11977488 -206059670 - L2 LINE L2 -2235 1079 738 977 184 0 0 chr3 11977488 11977656 -206059502 + FAM SINE Alu 1 168 -7 322 222 146 58 chr3 11977656 11977690 -206059468 - L2 LINE L2 -2576 738 708 327 253 35 11 chr3 11978248 11978335 -206058823 + MIR3 SINE MIR 114 202 -6 191 224 66 79 chr3 11978326 11978402 -206058756 - MIR3 SINE MIR -40 168 94 * 264 259 333 0 chr3 11979006 11979153 -206058005 + MIR SINE MIR 67 262 0 319 253 115 1 chr3 11979167 11979310 -206057848 - L1MCa LINE L1 -3986 2658 2508 1323 140 68 5 chr3 11980610 11980831 -206056327 - MER46A DNA MER2_type 0 236 2 401 293 48 5 chr3 11981147 11981335 -206055823 + L1ME LINE L1 5622 5817 -304 405 70 0 0 chr3 11981383 11981440 -206055718 + (TG)n Simple_repeat Simple_repeat 2 58 0 1210 172 57 102 chr3 11981622 11981976 -206055182 - MLT1A1 LTR MaLR -7 358 21 256 353 0 0 chr3 11982150 11982218 -206054940 + L2 LINE L2 3134 3201 -71 303 243 0 72 chr3 11982239 11982350 -206054808 + GA-rich Low_complexity Low_complexity 4 106 0 316 222 0 0 chr3 11983597 11983660 -206053498 - MER20 DNA MER1_type -3 216 154 1285 175 75 52 chr3 11983694 11984043 -206053115 + MLT1B LTR MaLR 34 390 0 469 171 55 75 chr3 11984048 11984194 -206052964 - MER20 DNA MER1_type -76 143 1 249 246 130 0 chr3 11984207 11984276 -206052882 + L2 LINE L2 3190 3267 -5 216 0 0 0 chr3 11985512 11985536 -206051622 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 2531 245 99 50 chr3 11986164 11987456 -206049702 + L1MCc LINE L1 17 1372 -5051 468 259 48 48 chr3 11987452 11987803 -206049355 + L1MCc LINE L1 1583 1933 -5008 * 2627 222 27 38 chr3 11987809 11988467 -206048691 - L1MCa LINE L1 -5545 997 347 1484 214 16 40 chr3 11988472 11988850 -206048308 - L1MCa LINE L1 -6137 405 37 5299 147 13 16 chr3 11989986 11990912 -206046246 - MER49 LTR ERV1 0 923 1 332 114 43 57 chr3 11991024 11991094 -206046064 - L2 LINE L2 0 3313 3245 189 331 38 50 chr3 11991103 11991263 -206045895 - L2 LINE L2 -194 3078 2921 673 233 82 0 chr3 11991580 11991726 -206045432 + MER5A DNA MER1_type 31 188 -1 292 314 20 33 chr3 11991731 11991884 -206045274 - L2 LINE L2 -798 2516 2366 187 277 0 21 chr3 11991915 11991962 -206045196 - MIR SINE MIR -63 145 100 755 281 25 0 chr3 11992025 11992221 -206044937 - L1M4 LINE L1 -5995 547 347 1232 244 48 53 chr3 11992237 11992742 -206044416 + MER74B LTR ERVL 76 577 -45 563 301 7 13 chr3 11993129 11993282 -206043876 + MIR3 SINE MIR 36 187 -21 597 229 117 32 chr3 11993674 11993862 -206043296 + MIR SINE MIR 1 204 -58 674 335 102 18 chr3 11993907 11994342 -206042816 - L2 LINE L2 -109 3163 2682 1295 121 157 0 chr3 11994355 11994603 -206042555 + MER7A DNA MER2_type 62 346 0 358 223 30 49 chr3 11994948 11995080 -206042078 + L1ME1 LINE L1 5887 6023 -141 407 205 116 0 chr3 11995391 11995503 -206041655 - MER106B DNA MER1_type -3 1056 932 242 29 29 0 chr3 11995532 11995567 -206041591 + (TA)n Simple_repeat Simple_repeat 2 37 0 180 314 0 0 chr3 11996100 11996170 -206040988 + L2 LINE L2 719 788 -2526 644 317 45 18 chr3 11997295 11997519 -206039639 + MIR SINE MIR 27 256 -6 1854 153 26 19 chr3 11998155 11998463 -206038695 - AluJo SINE Alu -2 310 1 192 271 0 0 chr3 11998949 11998997 -206038161 - MIR SINE MIR -111 151 104 2230 98 20 0 chr3 11999229 11999524 -206037634 - AluSx SINE Alu -11 301 1 246 314 181 4 chr3 12000138 12000364 -206036794 - L1MC4a LINE L1 -1655 6153 5888 194 248 55 128 chr3 12000919 12001028 -206036130 + MIR SINE MIR 45 145 -117 2222 108 0 20 chr3 12002253 12002559 -206034599 + AluSx SINE Alu 1 300 -12 366 80 0 0 chr3 12002833 12002883 -206034275 + (TG)n Simple_repeat Simple_repeat 2 51 0 27 29 0 0 chr3 12003723 12003757 -206033401 + AT_rich Low_complexity Low_complexity 1 34 0 3150 196 59 16 chr3 12005555 12006298 -206030860 + L1MB4 LINE L1 5401 6175 -5 889 135 24 0 chr3 12007083 12007209 -206029949 + AluSq/x SINE Alu 5 133 -180 2099 140 10 7 chr3 12007214 12007521 -206029637 + AluSx SINE Alu 1 308 -4 1536 164 82 27 chr3 12008378 12008781 -206028377 + LTR37A LTR ERV1 1 425 -1 756 316 68 11 chr3 12010143 12010494 -206026664 + L2 LINE L2 1201 1571 -1743 760 237 42 19 chr3 12010536 12010751 -206026407 - MER112 DNA MER1_type -40 220 1 624 242 53 44 chr3 12010781 12011008 -206026150 + L2 LINE L2 1694 1922 -1392 345 272 37 31 chr3 12011074 12011236 -206025922 - L1MEc LINE L1 -6205 191 29 317 98 232 0 chr3 12011272 12011354 -206025804 + Charlie1 DNA MER1_type 2549 2649 -112 665 133 17 0 chr3 12011354 12011474 -206025684 - L1M4 LINE L1 -3246 2900 2779 825 212 187 15 chr3 12011483 12011809 -206025349 - L1MEc LINE L1 -5975 421 40 403 164 0 0 chr3 12011814 12011887 -206025271 + Charlie1 DNA MER1_type 2633 2705 -56 444 257 123 12 chr3 12011890 12012061 -206025097 + LTR1 LTR ERV1 28 217 -568 359 212 68 48 chr3 12012159 12012305 -206024853 + LTR28 LTR ERV1 407 555 -465 544 183 14 78 chr3 12012501 12012643 -206024515 + HUERS-P2 LTR ERV1 4 136 -2952 * 605 238 43 48 chr3 12012620 12012830 -206024328 + HUERS-P2 LTR ERV1 622 830 -2258 961 183 108 57 chr3 12012830 12013163 -206023995 + MLT1C LTR MaLR 116 465 -2 551 291 26 32 chr3 12013214 12013403 -206023755 + L2 LINE L2 3126 3313 0 251 314 177 65 chr3 12013440 12013984 -206023174 - L2 LINE L2 -185 3087 2488 396 299 0 12 chr3 12013984 12014151 -206023007 + HAL1 LINE L1 1450 1614 -893 1099 68 125 6 chr3 12014214 12014390 -206022768 + MER30 DNA MER1_type 1 197 -33 1160 267 84 58 chr3 12014405 12014790 -206022368 + HAL1 LINE L1 1673 2047 -460 2271 53 23 27 chr3 12014790 12015090 -206022068 + AluY SINE Alu 1 299 -12 1160 267 84 58 chr3 12015090 12015512 -206021646 + HAL1 LINE L1 2047 2501 -6 184 302 0 0 chr3 12016175 12016218 -206020940 - L2 LINE L2 -8 3305 3263 28 61 0 0 chr3 12017056 12017105 -206020053 + AT_rich Low_complexity Low_complexity 1 49 0 231 208 19 19 chr3 12017713 12017766 -206019392 - MIR3 SINE MIR -1 207 155 547 177 23 23 chr3 12018211 12018341 -206018817 + L1MD3 LINE L1 7856 7985 -10 518 190 52 40 chr3 12018808 12018982 -206018176 + L1MC5 LINE L1 7733 7908 -53 2309 70 3 35 chr3 12019304 12019617 -206017541 + AluY SINE Alu 1 303 -8 636 302 36 22 chr3 12019668 12020026 -206017132 + L1ME1 LINE L1 19 381 -6042 2558 59 0 0 chr3 12020027 12020330 -206016828 - AluY SINE Alu -8 303 1 808 276 14 14 chr3 12020669 12020890 -206016268 + L1MCc LINE L1 808 1028 -5395 2074 249 177 30 chr3 12021002 12022483 -206014675 + L1MCc LINE L1 1447 3204 -3737 2381 95 0 0 chr3 12022483 12022788 -206014370 + AluSq SINE Alu 1 305 -8 2074 249 177 30 chr3 12022788 12022880 -206014278 + L1MCc LINE L1 3204 3281 -3660 940 284 100 31 chr3 12022885 12023375 -206013783 + L1ME1 LINE L1 420 943 -5998 1541 202 30 8 chr3 12023580 12023946 -206013212 + L1ME1 LINE L1 1292 1665 -5279 2402 264 76 60 chr3 12023994 12024446 -206012712 + L1MC4 LINE L1 6603 7046 -996 2516 65 10 0 chr3 12024446 12024754 -206012404 + AluY SINE Alu 1 311 0 2402 264 76 60 chr3 12024754 12025718 -206011440 + L1MC4 LINE L1 7046 8042 0 368 194 28 28 chr3 12025706 12025814 -206011344 + L1ME1 LINE L1 2334 2441 -4681 * 1565 166 61 14 chr3 12025818 12026095 -206011063 + AluJo SINE Alu 3 292 -20 651 228 55 42 chr3 12026158 12026395 -206010763 + L1ME1 LINE L1 2439 2678 -4444 41526 44 6 0 chr3 12026407 12032513 -206004645 + L1PA4 LINE L1 11 6154 -1 1897 243 100 28 chr3 12032525 12033965 -206003193 + L1ME1 LINE L1 2703 4204 -2737 2930 163 65 45 chr3 12034024 12034088 -206003070 + L1MB8 LINE L1 5451 5512 -666 2254 86 0 17 chr3 12034088 12034389 -206002769 - AluSx SINE Alu -15 297 2 2930 163 65 45 chr3 12034389 12035036 -206002122 + L1MB8 LINE L1 5512 6176 -2 534 207 152 0 chr3 12035038 12035236 -206001922 + L1ME1 LINE L1 4644 4871 -2070 1231 251 73 27 chr3 12035385 12035903 -206001255 + L1ME1 LINE L1 4863 5404 -1537 3036 201 65 49 chr3 12036097 12037259 -205999899 + L1ME1 LINE L1 5428 6607 -354 2305 89 0 0 chr3 12037259 12037576 -205999582 + AluSg SINE Alu 1 317 0 3036 201 65 49 chr3 12037576 12037934 -205999224 + L1ME1 LINE L1 6607 6958 -3 1884 261 118 28 chr3 12037962 12039665 -205997493 + L1ME3A LINE L1 4297 6156 -14 750 268 49 16 chr3 12039820 12040063 -205997095 - MIR SINE MIR 0 262 12 203 421 69 0 chr3 12040589 12040791 -205996367 - L2 LINE L2 -872 2442 2227 406 320 0 56 chr3 12041192 12041370 -205995788 - MER5A DNA MER1_type -7 182 15 306 256 12 0 chr3 12042162 12042248 -205994910 + MER103 DNA DNA 9 95 -71 23 97 0 0 chr3 12043532 12043604 -205993554 + AT_rich Low_complexity Low_complexity 1 72 0 809 236 121 0 chr3 12045237 12045436 -205991722 - MER58A DNA MER1_type 0 224 2 416 350 32 59 chr3 12046448 12046548 -205990610 + L1MEc LINE L1 22 123 -6273 2307 152 57 2 chr3 12046548 12046950 -205990208 + MSTA LTR MaLR 1 424 -4 416 350 32 59 chr3 12046950 12047223 -205989935 + L1MEc LINE L1 123 385 -6011 365 291 142 28 chr3 12047547 12048125 -205989033 + L1MEc LINE L1 709 1352 -5044 356 158 71 47 chr3 12048151 12048278 -205988880 + L1MEc LINE L1 2889 3018 -3197 1336 243 69 6 chr3 12048314 12048821 -205988337 + L1MEc LINE L1 3099 3637 -2578 862 179 0 0 chr3 12048842 12048976 -205988182 + FRAM SINE Alu 4 137 -39 516 203 7 20 chr3 12048988 12049141 -205988017 + GA-rich Low_complexity Low_complexity 4 154 0 1204 177 148 23 chr3 12049357 12049662 -205987496 - MER2 DNA MER2_type -1 343 1 400 284 0 0 chr3 12049777 12049879 -205987279 + Tigger3(Golem) DNA MER2_type 21 122 -2907 * 4009 118 49 22 chr3 12049856 12049915 -205987243 + Tigger3(Golem) DNA MER2_type 2277 2333 -695 2542 72 0 0 chr3 12049915 12050222 -205986936 - AluSc SINE Alu -2 307 1 4009 118 49 22 chr3 12050222 12050893 -205986265 + Tigger3(Golem) DNA MER2_type 2333 3027 -1 1288 142 90 23 chr3 12051163 12051441 -205985717 + L1MD3 LINE L1 6616 6881 -1114 25 75 0 0 chr3 12053358 12053411 -205983747 + AT_rich Low_complexity Low_complexity 1 53 0 7515 146 69 32 chr3 12053978 12054466 -205982692 + L1MCa LINE L1 32 501 -5925 185 0 40 0 chr3 12054466 12054491 -205982667 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2040 108 7 17 chr3 12054497 12054785 -205982373 - AluSx SINE Alu -27 285 1 7515 146 69 32 chr3 12054785 12056208 -205980950 + L1MCa LINE L1 505 2111 -4315 1413 215 25 25 chr3 12056213 12056571 -205980587 - MLT1A2 LTR MaLR -11 363 6 1190 136 5 5 chr3 12056575 12056774 -205980384 - MLT1A2-int LTR MaLR 0 1735 1537 417 130 0 26 chr3 12057033 12057110 -205980048 - MER116 DNA Mariner 0 80 6 725 198 167 5 chr3 12057119 12057311 -205979847 - MIR SINE MIR -22 240 18 21 0 0 0 chr3 12057311 12057332 -205979826 + AT_rich Low_complexity Low_complexity 1 21 0 572 121 11 0 chr3 12057332 12057423 -205979735 - Tigger5 DNA MER2_type 0 2323 2232 * 896 112 22 0 chr3 12057415 12057549 -205979609 - Tigger5 DNA MER2_type -2185 138 2 440 194 46 23 chr3 12057549 12057724 -205979434 + (TA)n Simple_repeat Simple_repeat 1 179 0 336 258 156 6 chr3 12059682 12059849 -205977309 + L1M4 LINE L1 202 393 -5498 370 399 19 28 chr3 12059903 12060116 -205977042 + L1M3c LINE L1 233 443 -5698 2269 165 70 79 chr3 12060305 12061027 -205976131 - Tigger7 DNA MER2_type -2 2585 3 1332 211 62 59 chr3 12061098 12061586 -205975572 + L1M4 LINE L1 3670 4158 -1812 1298 192 77 15 chr3 12061589 12061927 -205975231 + L1M4 LINE L1 4263 4621 -1349 417 194 32 95 chr3 12062231 12062399 -205974759 + L1ME1 LINE L1 6018 6183 -1 183 279 202 0 chr3 12062461 12062565 -205974593 - MIR SINE MIR -6 256 132 667 159 18 0 chr3 12064236 12064349 -205972809 + AluSg/x SINE Alu 186 300 -12 308 198 83 50 chr3 12064349 12064470 -205972688 + L1MC4a LINE L1 5822 5946 -1862 1861 158 34 0 chr3 12064482 12064779 -205972379 + AluJo SINE Alu 1 307 -5 390 155 0 0 chr3 12064965 12065036 -205972122 + L1ME4a LINE L1 5786 5856 -265 228 306 0 0 chr3 12065090 12065152 -205972006 - MIR SINE MIR -74 188 127 387 196 65 36 chr3 12065226 12065364 -205971794 + L1ME4a LINE L1 5969 6110 -11 298 320 260 0 chr3 12065980 12066161 -205970997 + L3 LINE CR1 1348 1575 -2 567 225 57 107 chr3 12066512 12066756 -205970402 - MIR SINE MIR -18 244 13 182 257 73 83 chr3 12066888 12066997 -205970161 - MIR SINE MIR -50 212 105 375 233 109 91 chr3 12067110 12067440 -205969718 + MER113 DNA MER1_type? 152 487 -34 202 354 42 0 chr3 12068221 12068317 -205968841 - MIR SINE MIR -56 206 107 2601 122 78 7 chr3 12068478 12068929 -205968229 + MER31A LTR ERV1 1 483 -2 261 227 34 23 chr3 12069237 12069325 -205967833 + GA-rich Low_complexity Low_complexity 1 89 0 787 173 38 16 chr3 12069870 12070055 -205967103 - MER53 DNA DNA 0 189 1 530 167 0 9 chr3 12070237 12070351 -205966807 + CT-rich Low_complexity Low_complexity 1 113 0 583 275 69 81 chr3 12070351 12070711 -205966447 - L2 LINE L2 -1 3312 2957 681 254 52 0 chr3 12070736 12070909 -205966249 + MIR SINE MIR 81 262 0 216 302 103 48 chr3 12070918 12071044 -205966114 - L2 LINE L2 -542 2772 2640 211 240 0 20 chr3 12071370 12071420 -205965738 - L2 LINE L2 0 3313 3265 1207 230 22 61 chr3 12071523 12071692 -205965466 - MLT1K LTR MaLR 0 588 414 2222 108 13 7 chr3 12071692 12071999 -205965159 - AluSg SINE Alu -1 309 1 1207 230 22 61 chr3 12071999 12072238 -205964920 - MLT1K LTR MaLR -174 414 196 458 248 85 25 chr3 12072342 12072533 -205964625 + MLT1H LTR MaLR 12 185 -224 313 241 49 25 chr3 12072649 12072813 -205964345 + MLT1H LTR MaLR 395 549 0 180 241 41 152 chr3 12073311 12073456 -205963702 + L2 LINE L2 3140 3268 -4 583 299 47 14 chr3 12073593 12073804 -205963354 + MIR SINE MIR 22 239 -23 400 200 53 0 chr3 12073877 12073952 -205963206 + MIR SINE MIR 9 87 -175 325 264 83 59 chr3 12073954 12074727 -205962431 + L1MC4a LINE L1 6697 7415 -393 1529 165 37 78 chr3 12074773 12075094 -205962064 + AluJb SINE Alu 4 311 -1 289 263 115 42 chr3 12075243 12075574 -205961584 + L1MC5 LINE L1 7558 7912 -49 578 211 149 19 chr3 12076039 12076200 -205960958 + MIR SINE MIR 63 244 -18 502 299 96 0 chr3 12076341 12076498 -205960660 - MIR SINE MIR -79 183 12 1414 168 52 18 chr3 12076704 12076873 -205960285 - AluJo SINE Alu -16 296 111 498 17 0 0 chr3 12076873 12076932 -205960226 + (TG)n Simple_repeat Simple_repeat 2 60 0 1414 168 52 18 chr3 12076932 12077048 -205960110 - AluJo SINE Alu -201 111 1 1136 240 79 31 chr3 12077120 12077574 -205959584 + MLT1K LTR MaLR 1 476 0 1977 125 0 3 chr3 12077940 12078258 -205958900 + AluSx SINE Alu 1 317 0 204 40 0 0 chr3 12078418 12078443 -205958715 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1668 160 0 24 chr3 12078443 12078730 -205958428 - AluJo SINE Alu -32 280 1 385 321 172 20 chr3 12078732 12079232 -205957926 + L2 LINE L2 2692 3272 0 767 248 172 35 chr3 12079313 12079627 -205957531 - L2 LINE L2 0 3313 2957 664 247 88 42 chr3 12080387 12080627 -205956531 + MIR SINE MIR 19 261 -1 1965 129 0 0 chr3 12080639 12080925 -205956233 - AluSx SINE Alu -13 299 14 530 293 84 0 chr3 12081526 12081693 -205955465 - MIR3 SINE MIR -21 187 7 427 307 39 7 chr3 12081850 12082003 -205955155 - MIR SINE MIR -86 176 19 319 310 33 12 chr3 12082079 12082258 -205954900 + MIR3 SINE MIR 3 185 -64 420 176 2 0 chr3 12082750 12082831 -205954327 - MLT1H LTR MaLR 0 549 474 501 288 72 65 chr3 12082938 12083294 -205953864 + MLT1K LTR MaLR 180 580 -8 264 280 64 88 chr3 12083457 12083582 -205953576 + L2 LINE L2 3149 3270 -2 1933 176 89 0 chr3 12083679 12084038 -205953120 + MSTD LTR MaLR 6 396 0 972 262 20 8 chr3 12084374 12084618 -205952540 + MIR SINE MIR 2 248 -14 261 299 127 22 chr3 12087592 12087726 -205949432 + MIR SINE MIR 1 143 -65 347 318 8 16 chr3 12088227 12088353 -205948805 - MIR SINE MIR -110 152 28 302 352 0 0 chr3 12089551 12089639 -205947519 - L1MC4 LINE L1 -1341 6701 6614 916 255 8 13 chr3 12090617 12090856 -205946302 + MIR SINE MIR 12 249 -13 763 225 28 34 chr3 12090918 12091096 -205946062 - MIR SINE MIR -64 198 22 268 273 30 0 chr3 12091501 12091567 -205945591 + MIR SINE MIR 69 136 -126 444 256 39 32 chr3 12093061 12093134 -205944024 - MER103 DNA DNA -8 158 87 1970 135 40 6 chr3 12093134 12093460 -205943698 - MER1B DNA MER1_type 0 337 1 444 256 39 32 chr3 12093460 12093542 -205943616 - MER103 DNA DNA -79 87 2 600 293 105 39 chr3 12094284 12094618 -205942540 + L2 LINE L2 2958 3313 0 210 150 0 0 chr3 12094620 12094660 -205942498 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr3 12097104 12097128 -205940030 + AT_rich Low_complexity Low_complexity 1 24 0 300 262 24 0 chr3 12098696 12098780 -205938378 - MER117 DNA MER1_type 0 197 112 596 172 101 65 chr3 12099482 12099651 -205937507 + MLT1B LTR MaLR 1 175 -215 1759 148 16 30 chr3 12099651 12099954 -205937204 + AluJb SINE Alu 1 299 -13 902 198 0 23 chr3 12100502 12100679 -205936479 + MIR SINE MIR 63 235 -27 522 275 225 39 chr3 12101667 12102125 -205935033 + L2 LINE L2 2373 2915 -399 340 343 39 34 chr3 12102134 12102338 -205934820 - L1MC4 LINE L1 -17 8025 7821 1816 145 0 26 chr3 12102340 12102651 -205934507 - AluJo SINE Alu -9 303 1 557 267 18 120 chr3 12102656 12102989 -205934169 + L2 LINE L2 2886 3184 -129 229 196 0 0 chr3 12103018 12103069 -205934089 - L1MC4 LINE L1 -1340 6702 6652 426 296 48 0 chr3 12103101 12103226 -205933932 + L2 LINE L2 3182 3312 -1 438 234 177 40 chr3 12103229 12103404 -205933754 - MIR SINE MIR -17 245 47 3692 262 61 18 chr3 12104284 12105398 -205931760 + L1MB7 LINE L1 11 1172 -5687 12735 203 40 41 chr3 12105400 12105490 -205931668 + L1MB7 LINE L1 2672 2761 -4234 1733 172 28 8 chr3 12105490 12105850 -205931308 + L1MA6 LINE L1 5934 6300 0 12735 203 40 41 chr3 12105850 12107660 -205929498 + L1MB7 LINE L1 2761 4571 -2424 1851 135 7 3 chr3 12107660 12107981 -205929177 + AluSx SINE Alu 1 322 0 12735 203 40 41 chr3 12107981 12110435 -205926723 + L1MB7 LINE L1 4571 6995 0 2190 104 0 3 chr3 12110589 12110896 -205926262 + AluSc SINE Alu 1 306 -3 477 209 18 0 chr3 12110978 12111088 -205926070 + L1ME2 LINE L1 5835 5946 -218 2044 128 0 29 chr3 12111426 12111739 -205925419 - AluJb SINE Alu -6 306 3 473 257 54 65 chr3 12112119 12112351 -205924807 - MIR SINE MIR -32 230 2 189 0 0 0 chr3 12112914 12112935 -205924223 + (GA)n Simple_repeat Simple_repeat 1 21 0 1250 246 73 27 chr3 12113237 12113648 -205923510 + MLT1K LTR MaLR 154 583 -5 1253 152 115 12 chr3 12113846 12114090 -205923068 + ORSL DNA AcHobo 3 271 -4 288 193 145 0 chr3 12114352 12114435 -205922723 + L2 LINE L2 3153 3247 -25 227 232 0 0 chr3 12114504 12114560 -205922598 - MER102a DNA MER1_type -28 302 247 189 317 33 0 chr3 12115242 12115302 -205921856 - MIR3 SINE MIR -46 162 101 516 288 75 57 chr3 12115531 12115812 -205921346 - L2 LINE L2 -23 3290 3005 431 278 198 55 chr3 12115830 12116244 -205920914 + L2 LINE L2 2736 3272 0 1563 291 38 15 chr3 12117140 12117617 -205919541 + MLT1K LTR MaLR 98 585 -3 734 283 192 19 chr3 12118387 12118814 -205918344 + MLT1K LTR MaLR 88 588 0 275 232 74 42 chr3 12118814 12118909 -205918249 + L2 LINE L2 3171 3268 -4 3350 252 63 57 chr3 12120376 12121864 -205915294 - L1MC4 LINE L1 -3 8039 6431 953 151 29 92 chr3 12122015 12122189 -205914969 + L1MB8 LINE L1 5955 6112 -66 5502 125 21 3 chr3 12122189 12123059 -205914099 - L1MA4A LINE L1 0 6303 5419 953 151 29 92 chr3 12123059 12123122 -205914036 + L1MB8 LINE L1 6112 6177 -1 1668 256 90 29 chr3 12123321 12123899 -205913259 - L1MC4a LINE L1 -1768 6040 5428 522 318 121 0 chr3 12124144 12124317 -205912841 - MER91A DNA MER1_type 0 196 3 244 333 11 68 chr3 12124468 12124652 -205912506 - MIR SINE MIR -50 212 36 180 77 0 0 chr3 12124742 12124768 -205912390 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr3 12126252 12126273 -205910885 + AT_rich Low_complexity Low_complexity 1 21 0 804 168 105 53 chr3 12126279 12126488 -205910670 + AluJo SINE Alu 1 220 -92 2079 92 0 3 chr3 12126518 12126800 -205910358 + AluSc SINE Alu 1 281 -28 717 236 130 88 chr3 12127874 12128213 -205908945 + L2 LINE L2 2920 3272 0 270 193 0 0 chr3 12129383 12129440 -205907718 + (TAG)n Simple_repeat Simple_repeat 2 58 0 708 276 40 0 chr3 12129460 12129659 -205907499 + MER63A DNA MER1_type 4 210 0 756 258 191 34 chr3 12130502 12130920 -205906238 + L2 LINE L2 2829 3312 -1 612 62 0 12 chr3 12130983 12131064 -205906094 - MADE1 DNA Mariner 0 80 1 465 259 19 0 chr3 12133670 12133778 -205903380 - MIR SINE MIR -21 241 132 377 234 48 106 chr3 12134303 12134331 -205902827 + MARNA DNA Mariner 17 45 -541 1609 148 3 39 chr3 12134331 12134615 -205902543 + AluJb SINE Alu 1 274 -38 393 22 0 0 chr3 12134621 12134667 -205902491 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 377 234 48 106 chr3 12134667 12134819 -205902339 + MARNA DNA Mariner 50 193 -393 500 277 82 31 chr3 12134953 12135148 -205902010 + MARNA DNA Mariner 381 585 -1 810 185 45 13 chr3 12135424 12135581 -205901577 - FRAM SINE Alu 0 166 5 286 226 58 123 chr3 12137669 12137824 -205899334 - MIR SINE MIR -31 231 87 2181 113 0 3 chr3 12137884 12138194 -205898964 - AluSg SINE Alu -1 309 1 232 275 247 18 chr3 12138213 12138381 -205898777 - MIR SINE MIR -50 212 9 368 293 7 22 chr3 12139431 12139583 -205897575 - MIR SINE MIR -64 144 34 187 197 0 42 chr3 12140078 12140149 -205897009 + GA-rich Low_complexity Low_complexity 3 70 0 297 0 0 0 chr3 12141033 12141066 -205896092 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 511 275 21 42 chr3 12142796 12142989 -205894169 + MER5A DNA MER1_type 1 189 0 222 195 0 0 chr3 12143002 12143043 -205894115 - L2 LINE L2 -11 3261 3221 2220 278 153 37 chr3 12143208 12143935 -205893223 + L2 LINE L2 1536 2177 -1136 1910 208 29 9 chr3 12143935 12144354 -205892804 - L1MB7 LINE L1 -1 6183 5757 2220 278 153 37 chr3 12144354 12144997 -205892161 + L2 LINE L2 2177 3052 -261 301 74 19 19 chr3 12145007 12145061 -205892097 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 1093 138 28 22 chr3 12145063 12145244 -205891914 - AluJo SINE Alu -44 268 87 505 306 43 39 chr3 12145249 12145504 -205891654 + L2 LINE L2 3058 3313 0 315 276 92 0 chr3 12145622 12145720 -205891438 - MIR SINE MIR -71 137 31 402 324 0 10 chr3 12145952 12146054 -205891104 + MIR SINE MIR 32 132 -76 264 280 187 13 chr3 12146059 12146209 -205890949 - MER20B DNA MER1_type -43 176 1 1159 188 94 42 chr3 12146213 12146290 -205890868 - MER33 DNA MER1_type -2261 324 252 1935 150 0 6 chr3 12146290 12146604 -205890554 + AluSx SINE Alu 1 312 0 1159 188 94 42 chr3 12146604 12146834 -205890324 - MER33 DNA MER1_type -2333 252 1 418 308 55 52 chr3 12147286 12147614 -205889544 + L2 LINE L2 2814 3142 -171 931 133 13 6 chr3 12147635 12147793 -205889365 - AluSg/x SINE Alu -22 290 132 274 263 97 79 chr3 12147796 12147910 -205889248 + L2 LINE L2 3155 3270 -43 21 0 0 0 chr3 12148162 12148183 -205888975 + AT_rich Low_complexity Low_complexity 1 21 0 678 152 0 0 chr3 12148686 12148785 -205888373 - Tigger7 DNA MER2_type 0 2587 2489 * 1347 174 0 107 chr3 12148783 12149082 -205888076 - Tigger7 DNA MER2_type -2220 267 1 913 155 40 0 chr3 12149495 12149669 -205887489 + L1MC3 LINE L1 7605 7785 0 332 43 0 21 chr3 12149972 12150019 -205887139 + (ATG)n Simple_repeat Simple_repeat 3 48 0 410 160 20 60 chr3 12150598 12150698 -205886460 - L1ME2 LINE L1 -60 6104 6009 597 221 42 1 chr3 12150703 12150851 -205886307 + L1ME2 LINE L1 5933 6248 -86 411 374 25 5 chr3 12150851 12151054 -205886104 - L2 LINE L2 -376 2938 2732 2364 42 0 7 chr3 12151293 12151603 -205885555 - AluY SINE Alu 0 308 1 352 272 65 19 chr3 12152467 12152622 -205884536 - MIR SINE MIR -62 146 21 211 276 35 0 chr3 12152834 12152892 -205884266 + L2 LINE L2 3246 3305 -8 * 693 271 94 36 chr3 12152891 12153010 -205884148 - L2 LINE L2 -94 3219 3108 1441 198 7 16 chr3 12153010 12153313 -205883845 + AluJo SINE Alu 1 300 -12 693 271 94 36 chr3 12153313 12153470 -205883688 - L2 LINE L2 -205 3108 2927 229 290 43 32 chr3 12153977 12154070 -205883088 + MIR3 SINE MIR 77 170 -38 202 118 20 98 chr3 12154144 12154195 -205882963 - MIR3 SINE MIR -49 159 113 255 265 48 48 chr3 12154233 12154249 -205882909 - MER5B DNA MER1_type -95 83 68 1297 136 3 183 chr3 12154249 12154610 -205882548 - AluJb SINE Alu -16 296 1 255 265 48 48 chr3 12154610 12154676 -205882482 - MER5B DNA MER1_type -109 69 1 1455 330 169 30 chr3 12155240 12155489 -205881669 + L3 LINE CR1 283 496 -1081 1524 170 76 10 chr3 12155489 12155778 -205881380 - AluJb SINE Alu -4 308 1 1455 330 169 30 chr3 12155778 12156176 -205880982 + L3 LINE CR1 496 837 -740 2145 101 7 3 chr3 12156176 12156482 -205880676 - AluSx SINE Alu -5 307 1 1455 330 169 30 chr3 12156482 12156963 -205880195 + L3 LINE CR1 837 1569 -8 748 241 29 0 chr3 12158323 12158497 -205878661 - MSTD LTR MaLR -212 184 6 264 280 64 88 chr3 12158594 12158719 -205878439 - L2 LINE L2 -2 3270 3149 431 291 81 63 chr3 12158882 12159234 -205877924 - MLT1K LTR MaLR -8 580 180 400 210 0 0 chr3 12159341 12159422 -205877736 + MLT1H LTR MaLR 469 549 0 271 262 0 0 chr3 12160456 12160517 -205876641 - MER20 DNA MER1_type -5 214 154 1471 169 75 52 chr3 12160551 12160900 -205876258 + MLT1B LTR MaLR 34 390 0 548 171 55 75 chr3 12160905 12161051 -205876107 - MER20 DNA MER1_type -76 143 1 255 200 143 14 chr3 12161063 12161133 -205876025 + L2 LINE L2 3230 3308 -5 204 40 0 0 chr3 12162374 12162399 -205874759 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 3003 247 58 64 chr3 12162784 12164103 -205873055 - L1MC4 LINE L1 -98 7710 6431 803 161 0 58 chr3 12164254 12164428 -205872730 + L1MB8 LINE L1 5955 6118 -60 3991 179 18 3 chr3 12164428 12165193 -205871965 - L1MA4A LINE L1 0 6303 5527 594 267 43 16 chr3 12165193 12165380 -205871778 - LTR16A LTR ERVL -177 273 82 273 200 0 80 chr3 12165397 12165472 -205871686 - L2 LINE L2 -86 3227 3159 791 173 43 0 chr3 12165789 12165951 -205871207 + L1MC3 LINE L1 7617 7785 0 332 43 0 21 chr3 12166254 12166301 -205870857 + (ATG)n Simple_repeat Simple_repeat 3 48 0 410 160 20 60 chr3 12166880 12166980 -205870178 - L1ME2 LINE L1 -60 6104 6009 503 267 44 0 chr3 12166985 12167120 -205870038 + L1ME2 LINE L1 5933 6073 -91 245 316 35 9 chr3 12167124 12167238 -205869920 - L2 LINE L2 -327 2945 2829 2350 45 0 7 chr3 12167596 12167882 -205869276 - AluY SINE Alu -27 284 1 579 293 26 37 chr3 12169218 12169409 -205867749 - MIR3 SINE MIR -3 205 17 23 0 0 0 chr3 12169454 12169477 -205867681 + AT_rich Low_complexity Low_complexity 1 23 0 3951 187 30 21 chr3 12169477 12170176 -205866982 - L1MB7 LINE L1 -77 6107 5399 1983 145 13 0 chr3 12170176 12170480 -205866678 - AluJb SINE Alu -4 308 1 3951 187 30 21 chr3 12170480 12170556 -205866602 - L1MB7 LINE L1 -785 5399 5325 816 157 0 22 chr3 12170556 12170690 -205866468 - FLAM_C SINE Alu -2 131 1 226 269 167 0 chr3 12170722 12170800 -205866358 - MER117 DNA MER1_type -105 92 2 261 0 0 0 chr3 12171392 12171421 -205865737 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 217 231 0 0 chr3 12171474 12171526 -205865632 + (ATG)n Simple_repeat Simple_repeat 2 53 0 244 231 0 0 chr3 12172534 12172586 -205864572 + MER117 DNA MER1_type 2 53 -144 1308 158 35 0 chr3 12172697 12172925 -205864233 - AluSx SINE Alu -76 236 1 1843 131 6 44 chr3 12173142 12173463 -205863695 + AluJo SINE Alu 1 309 -3 233 350 41 0 chr3 12173925 12174022 -205863136 - L2 LINE L2 -31 3241 3141 250 203 101 0 chr3 12174558 12174627 -205862531 - L2 LINE L2 0 3272 3197 719 242 11 32 chr3 12175262 12175452 -205861706 - MIR SINE MIR -28 234 49 182 262 0 0 chr3 12176129 12176171 -205860987 + L2 LINE L2 2995 3036 -277 3252 128 44 11 chr3 12176265 12176857 -205860301 + MER4B LTR ERV1 3 779 0 372 269 30 30 chr3 12176867 12177001 -205860157 + L2 LINE L2 3176 3309 -4 261 137 39 39 chr3 12177221 12177272 -205859886 + AluJ/FLAM SINE Alu 16 66 -236 191 341 24 24 chr3 12177273 12177355 -205859803 + L2 LINE L2 3231 3312 -1 430 320 110 29 chr3 12177423 12177704 -205859454 - MER102b DNA MER1_type -4 337 34 756 125 35 49 chr3 12177760 12177904 -205859254 + MER20 DNA MER1_type 16 157 -62 228 322 43 17 chr3 12178423 12178538 -205858620 - L2 LINE L2 -16 3256 3139 334 315 54 23 chr3 12179101 12179231 -205857927 - MIR SINE MIR -32 230 97 357 214 67 34 chr3 12179277 12179366 -205857792 - L1MC4 LINE L1 -1339 6703 6612 304 286 22 22 chr3 12179526 12179617 -205857541 + L1MC4 LINE L1 6612 6702 -1340 380 182 45 23 chr3 12179623 12179711 -205857447 + L1MC4 LINE L1 6614 6703 -1339 336 239 11 43 chr3 12179685 12179777 -205857381 - L1MC4 LINE L1 -1341 6701 6613 * 219 232 0 0 chr3 12179798 12179854 -205857304 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 1866 156 30 3 chr3 12179856 12180151 -205857007 - AluJb SINE Alu -9 303 1 186 259 69 35 chr3 12180159 12180217 -205856941 - L2 LINE L2 -17 3296 3237 759 285 58 47 chr3 12180229 12180408 -205856750 - LTR16A LTR ERVL 0 450 274 4634 92 5 3 chr3 12180408 12181050 -205856108 - L1PA12 LINE L1 -1 6167 5525 759 285 58 47 chr3 12181050 12181235 -205855923 - LTR16A LTR ERVL -176 274 82 267 218 0 77 chr3 12181252 12181330 -205855828 - L2 LINE L2 -86 3227 3156 395 113 0 16 chr3 12181752 12181814 -205855344 - MLT1L LTR MaLR -8 607 547 633 301 59 14 chr3 12182682 12182971 -205854187 + L1MC4a LINE L1 5666 5967 -1841 2241 141 8 22 chr3 12183812 12184041 -205853117 - MLT1A1 LTR MaLR 0 365 141 2055 146 152 19 chr3 12184041 12184417 -205852741 - MSTB LTR MaLR 0 426 1 2241 141 8 22 chr3 12184417 12184557 -205852601 - MLT1A1 LTR MaLR -224 141 1 398 248 17 8 chr3 12184722 12184839 -205852319 - MER103 DNA DNA -29 137 20 402 261 116 36 chr3 12184924 12185062 -205852096 - MIR3 SINE MIR -49 159 11 3005 119 111 15 chr3 12185324 12185802 -205851356 - MER1A DNA MER1_type 0 527 4 234 333 30 0 chr3 12185998 12186097 -205851061 + MER103 DNA DNA 63 164 -2 205 296 43 24 chr3 12186523 12186627 -205850531 - MER5B DNA MER1_type -64 118 22 246 369 27 0 chr3 12186710 12186821 -205850337 + MIR SINE MIR 32 145 -117 330 300 169 25 chr3 12187395 12187555 -205849603 + MIR3 SINE MIR 20 202 -6 246 279 34 32 chr3 12187670 12187817 -205849341 + MIR SINE MIR 2 218 -44 223 177 177 32 chr3 12188480 12188542 -205848616 + MIR SINE MIR 77 147 -115 211 232 98 24 chr3 12188590 12188672 -205848486 + L2 LINE L2 3159 3246 -26 1283 76 0 43 chr3 12189245 12189429 -205847729 + L1PA6 LINE L1 5977 6152 -2 210 245 113 38 chr3 12189534 12189640 -205847518 + L2 LINE L2 3149 3262 -10 180 0 0 0 chr3 12189676 12189696 -205847462 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 305 269 104 52 chr3 12189865 12189999 -205847159 + MIR SINE MIR 40 180 -82 228 236 93 14 chr3 12190027 12190105 -205847053 - MIR SINE MIR -40 168 87 598 203 17 0 chr3 12190107 12190225 -205846933 - MLT1K LTR MaLR 0 555 436 294 241 138 13 chr3 12190305 12190435 -205846723 - MLT1H LTR MaLR -235 174 56 189 107 0 0 chr3 12190863 12190891 -205846267 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 239 403 8 0 chr3 12190996 12191125 -205846033 + (CA)n Simple_repeat Simple_repeat 1 130 0 294 260 13 13 chr3 12191712 12191789 -205845369 + MIR SINE MIR 17 93 -115 23 33 0 0 chr3 12192322 12192352 -205844806 + AT_rich Low_complexity Low_complexity 1 30 0 331 307 69 55 chr3 12192432 12192650 -205844508 - L1MC4a LINE L1 -1747 6061 5841 677 293 103 17 chr3 12192666 12192898 -205844260 - MIR SINE MIR -8 254 3 1848 160 10 22 chr3 12192952 12193265 -205843893 + AluJb SINE Alu 1 309 -3 284 276 197 0 chr3 12194336 12194463 -205842695 - MLT1K LTR MaLR -18 570 419 244 289 115 39 chr3 12194475 12194579 -205842579 + L2 LINE L2 3197 3308 -5 194 61 0 30 chr3 12194654 12194687 -205842471 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 441 0 0 0 chr3 12194699 12194748 -205842410 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 1063 245 78 59 chr3 12194755 12195179 -205841979 - MLT1K LTR MaLR -155 433 2 697 320 92 31 chr3 12195268 12195627 -205841531 + L2 LINE L2 2886 3266 -6 357 216 0 0 chr3 12195734 12195822 -205841336 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 297 274 132 9 chr3 12195873 12195979 -205841179 - L2 LINE L2 -2 3311 3193 305 292 57 94 chr3 12196307 12196417 -205840741 + MIR3 SINE MIR 3 106 -102 2309 85 0 0 chr3 12196417 12196722 -205840436 - AluSg SINE Alu 0 305 1 305 292 57 94 chr3 12196722 12196802 -205840356 + MIR3 SINE MIR 106 187 -21 1018 258 21 0 chr3 12197277 12197510 -205839648 + MIR SINE MIR 24 261 -1 1307 112 21 0 chr3 12198571 12198759 -205838399 - L1PA10 LINE L1 -1 6167 5976 189 107 0 0 chr3 12199227 12199255 -205837903 + (TGG)n Simple_repeat Simple_repeat 1 28 0 942 232 77 0 chr3 12199278 12199498 -205837660 - MIR SINE MIR -22 240 4 2278 112 3 0 chr3 12199592 12199888 -205837270 + AluSq SINE Alu 3 299 -14 256 260 39 52 chr3 12200105 12200182 -205836976 - MIR SINE MIR -182 80 5 292 298 0 12 chr3 12200550 12200634 -205836524 + MLT1K LTR MaLR 182 264 -324 233 219 12 49 chr3 12200750 12200832 -205836326 + MLT1K LTR MaLR 454 532 -56 2297 122 0 0 chr3 12201384 12201688 -205835470 - AluSx SINE Alu -8 304 1 219 69 0 0 chr3 12201830 12201859 -205835299 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr3 12202129 12202153 -205835005 + (CAA)n Simple_repeat Simple_repeat 1 24 0 627 311 0 5 chr3 12203146 12203339 -205833819 - MIR SINE MIR 0 262 71 189 0 0 0 chr3 12203713 12203734 -205833424 + (TC)n Simple_repeat Simple_repeat 2 22 0 282 324 0 0 chr3 12204084 12204155 -205833003 + (CCCA)n Simple_repeat Simple_repeat 2 72 0 801 194 0 0 chr3 12204155 12204335 -205832823 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1027 278 64 82 chr3 12204945 12205508 -205831650 - L1ME3A LINE L1 -214 5956 5384 1863 151 0 20 chr3 12205508 12205800 -205831358 - AluJo SINE Alu -13 299 14 1027 278 64 82 chr3 12205800 12206514 -205830644 - L1ME3A LINE L1 -786 5384 4708 1989 134 6 26 chr3 12206542 12206855 -205830303 + AluJo SINE Alu 6 312 0 345 241 50 60 chr3 12206881 12207080 -205830078 + L1M4 LINE L1 2788 2984 -3162 251 267 79 0 chr3 12207227 12207328 -205829830 - L1M4 LINE L1 -2097 4049 3941 * 262 310 172 0 chr3 12207324 12207469 -205829689 + L1M4 LINE L1 4039 4208 -1938 36 0 0 0 chr3 12207624 12207660 -205829498 + AT_rich Low_complexity Low_complexity 1 36 0 1731 185 0 17 chr3 12207672 12207689 -205829469 - AluJo SINE Alu -15 297 281 426 85 0 0 chr3 12207689 12207748 -205829410 + (TA)n Simple_repeat Simple_repeat 2 60 0 1731 185 0 17 chr3 12207748 12208032 -205829126 - AluJo SINE Alu -31 281 1 624 264 165 0 chr3 12208048 12208260 -205828898 - MIR SINE MIR -13 249 3 1113 289 74 5 chr3 12208375 12208769 -205828389 + LTR16A LTR ERVL 19 439 -11 1683 153 51 0 chr3 12209031 12209306 -205827852 - AluJo SINE Alu -23 289 1 516 257 90 0 chr3 12209379 12209523 -205827635 + MIR SINE MIR 102 258 -4 353 68 0 0 chr3 12210350 12210394 -205826764 + MIR3 SINE MIR 115 158 -50 1130 178 5 0 chr3 12210395 12210580 -205826578 + MER5A DNA MER1_type 2 187 -2 503 295 52 52 chr3 12210611 12210940 -205826218 - MER102b DNA MER1_type -12 329 1 906 355 115 15 chr3 12211317 12211968 -205825190 + L3 LINE CR1 786 1501 -76 924 269 97 71 chr3 12212005 12212541 -205824617 + MLT1K LTR MaLR 37 586 -2 395 333 92 19 chr3 12212918 12213125 -205824033 - MIR SINE MIR -6 256 35 621 269 26 52 chr3 12214090 12214358 -205822800 - MIR SINE MIR 0 262 2 206 283 0 0 chr3 12214462 12214508 -205822650 - MIR SINE MIR -57 151 106 310 219 0 0 chr3 12214514 12214578 -205822580 - L2 LINE L2 -9 3263 3200 901 246 79 61 chr3 12214592 12215164 -205821994 + L1ME4a LINE L1 5522 6103 -18 284 263 124 25 chr3 12215658 12215821 -205821337 - MIR3 SINE MIR -37 171 21 1074 158 16 0 chr3 12216247 12216431 -205820727 + MER5A DNA MER1_type 1 187 -2 2128 160 11 3 chr3 12216503 12216866 -205820292 - MER47A DNA MER2_type 0 366 1 2420 90 63 0 chr3 12217241 12217575 -205819583 + THE1A LTR MaLR 1 355 0 201 158 26 0 chr3 12217648 12217686 -205819472 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 261 307 33 65 chr3 12218167 12218320 -205818838 + L2 LINE L2 2911 3058 -255 907 171 50 11 chr3 12218329 12218510 -205818648 + MER5A DNA MER1_type 1 188 -1 367 273 61 0 chr3 12218531 12218630 -205818528 + L2 LINE L2 3141 3245 -27 219 255 10 71 chr3 12218659 12218757 -205818401 - L2 LINE L2 -246 3026 2935 747 219 43 12 chr3 12218903 12219067 -205818091 + MER5B DNA MER1_type 4 172 -6 1916 166 7 0 chr3 12219078 12219373 -205817785 + AluJo SINE Alu 1 297 -15 225 296 0 0 chr3 12219459 12219513 -205817645 + (TGGG)n Simple_repeat Simple_repeat 1 54 0 224 294 123 70 chr3 12220285 12220683 -205816475 - L2 LINE L2 -38 3234 2816 311 335 50 29 chr3 12220910 12221152 -205816006 - L2 LINE L2 -810 2504 2258 185 167 148 102 chr3 12221622 12221730 -205815428 + MIR SINE MIR 8 120 -142 587 280 50 121 chr3 12221800 12222279 -205814879 - L2 LINE L2 -1 3271 2827 416 251 140 39 chr3 12223145 12223324 -205813834 - L2 LINE L2 -2 3311 3115 276 258 67 34 chr3 12223573 12223662 -205813496 + L2 LINE L2 3180 3271 -1 2409 151 38 16 chr3 12223891 12224341 -205812817 - MLT1C LTR MaLR -1 466 7 1938 87 68 13 chr3 12224341 12224651 -205812507 + THE1C LTR MaLR 1 327 -48 389 335 82 26 chr3 12224854 12225048 -205812110 + MIR SINE MIR 31 235 -27 416 352 28 56 chr3 12225612 12225825 -205811333 - MIR SINE MIR -26 236 30 488 208 129 16 chr3 12226461 12226785 -205810373 + MER113 DNA MER1_type? 19 413 -108 637 280 28 11 chr3 12226865 12227047 -205810111 - L3 LINE CR1 -105 1472 1288 492 341 23 56 chr3 12227496 12227710 -205809448 + MIR SINE MIR 30 236 -26 1672 166 14 54 chr3 12228579 12228875 -205808283 + AluJo SINE Alu 1 313 0 187 103 0 0 chr3 12228875 12228904 -205808254 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 192 77 0 0 chr3 12228983 12229009 -205808149 + (TCC)n Simple_repeat Simple_repeat 2 27 0 620 275 12 6 chr3 12229369 12229529 -205807629 - MER5A DNA MER1_type -3 186 26 413 276 40 63 chr3 12229715 12229889 -205807269 - L2 LINE L2 0 3272 3103 197 314 88 0 chr3 12230191 12230293 -205806865 + L2 LINE L2 2964 3074 -198 1179 248 93 20 chr3 12230295 12230734 -205806424 + MLT1H1 LTR MaLR 18 488 -67 448 269 115 0 chr3 12230864 12230968 -205806190 + L2 LINE L2 3157 3272 0 189 240 160 0 chr3 12230976 12231051 -205806107 - L2 LINE L2 -167 3105 3019 183 402 12 0 chr3 12231187 12231269 -205805889 + L2 LINE L2 3189 3271 -1 217 291 103 51 chr3 12231288 12231405 -205805753 + MIR SINE MIR 19 141 -67 398 344 52 7 chr3 12231739 12231893 -205805265 + MIR3 SINE MIR 19 179 -29 243 266 83 37 chr3 12232755 12232864 -205804294 + MIR SINE MIR 51 164 -98 368 226 150 8 chr3 12232914 12233047 -205804111 + L1ME4a LINE L1 5968 6119 -2 2501 70 0 0 chr3 12233168 12233467 -205803691 + AluY SINE Alu 1 299 -12 2580 156 16 9 chr3 12233660 12234110 -205803048 + L1MB3 LINE L1 5727 6179 -4 192 77 0 0 chr3 12234110 12234136 -205803022 + (CATA)n Simple_repeat Simple_repeat 2 27 0 2210 113 7 0 chr3 12234141 12234425 -205802733 + AluSx SINE Alu 1 286 -26 330 222 0 0 chr3 12234425 12234488 -205802670 + L1MC4 LINE L1 6641 6703 -1339 207 0 0 0 chr3 12234504 12234527 -205802631 + (GA)n Simple_repeat Simple_repeat 2 24 0 403 252 94 38 chr3 12235151 12235310 -205801848 - MIR SINE MIR 0 262 95 890 277 126 25 chr3 12235848 12236318 -205800840 + MER113 DNA MER1_type? 5 521 0 674 255 101 49 chr3 12236760 12237066 -205800092 + Charlie2 DNA MER1_type 2 323 -2459 1942 104 56 0 chr3 12237066 12237335 -205799823 + AluY SINE Alu 1 284 -27 318 80 0 0 chr3 12237335 12237385 -205799773 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 1325 198 0 8 chr3 12237403 12237650 -205799508 + L1PB4 LINE L1 5908 6152 -4 206 0 0 0 chr3 12237746 12237769 -205799389 + MER5C DNA MER1_type 4 26 -298 1628 151 0 53 chr3 12237773 12238058 -205799100 + AluJo SINE Alu 18 287 -25 385 97 32 32 chr3 12238060 12238122 -205799036 + MER5A DNA MER1_type 10 71 -118 828 182 0 82 chr3 12238123 12238160 -205798998 + AluJo SINE Alu 88 126 -186 2313 99 0 3 chr3 12238160 12238463 -205798695 - AluSc SINE Alu -7 302 1 828 182 0 82 chr3 12238463 12238595 -205798563 + AluJo SINE Alu 126 243 -69 207 0 0 0 chr3 12238621 12238644 -205798514 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 255 103 0 0 chr3 12238645 12238684 -205798474 + (GGGGA)n Simple_repeat Simple_repeat 5 43 0 268 150 62 38 chr3 12238702 12238782 -205798376 + L1MA10 LINE L1 6253 6334 0 276 250 230 20 chr3 12238794 12238894 -205798264 + MER5A DNA MER1_type 69 189 0 731 208 156 34 chr3 12238905 12239284 -205797874 + Charlie2 DNA MER1_type 2231 2655 -207 800 271 34 7 chr3 12239285 12239554 -205797604 + L1ME3 LINE L1 5615 5890 -272 591 273 78 0 chr3 12239568 12239773 -205797385 + L1ME3 LINE L1 5942 6162 0 705 165 16 8 chr3 12239821 12239942 -205797216 - FLAM_C SINE Alu -17 126 5 397 160 4 208 chr3 12239959 12240190 -205796968 + Charlie2 DNA MER1_type 2663 2846 -16 2320 105 0 0 chr3 12240484 12240778 -205796380 - AluSx SINE Alu -18 294 1 339 167 65 9 chr3 12240846 12240954 -205796204 + (CA)n Simple_repeat Simple_repeat 1 114 0 271 282 46 81 chr3 12241164 12241338 -205795820 - MIR SINE MIR -93 169 2 183 80 0 0 chr3 12241883 12241908 -205795250 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 193 295 64 13 chr3 12242063 12242141 -205795017 - MIR3 SINE MIR -23 185 104 2428 99 0 10 chr3 12242147 12242459 -205794699 - AluSx SINE Alu -3 309 1 210 350 58 0 chr3 12242485 12242588 -205794570 + L2 LINE L2 2697 2805 -509 3554 150 60 19 chr3 12242812 12243480 -205793678 - L1MC2 LINE L1 -9 6335 5641 260 94 57 0 chr3 12243481 12243534 -205793624 - L1MC2 LINE L1 0 6344 6289 299 128 73 18 chr3 12243711 12243820 -205793338 + (TA)n Simple_repeat Simple_repeat 1 115 0 752 219 56 85 chr3 12243834 12243920 -205793238 - L1MC2 LINE L1 -1865 5943 5856 2097 131 0 7 chr3 12243920 12244211 -205792947 + AluSx SINE Alu 1 289 -23 752 219 56 85 chr3 12244211 12244443 -205792715 - L1MC2 LINE L1 -1952 5856 5634 479 203 23 73 chr3 12244557 12244734 -205792424 + L1MC5 LINE L1 7758 7925 -36 504 297 36 0 chr3 12245193 12245331 -205791827 - MIR SINE MIR -72 190 48 593 223 192 16 chr3 12245565 12245758 -205791400 + MIR SINE MIR 6 232 -30 648 133 285 0 chr3 12245770 12245928 -205791230 - MER3 DNA MER1_type -6 203 1 426 298 48 37 chr3 12246244 12246432 -205790726 + MIR SINE MIR 21 210 -52 353 267 134 31 chr3 12246475 12246700 -205790458 + MIR SINE MIR 2 250 -12 204 79 0 53 chr3 12247115 12247153 -205790005 + (CCCCG)n Simple_repeat Simple_repeat 1 36 0 273 227 96 18 chr3 12247387 12247486 -205789672 - MIR SINE MIR -60 148 28 568 270 15 7 chr3 12247586 12247723 -205789435 + MIR SINE MIR 20 157 -105 490 274 8 0 chr3 12247751 12247875 -205789283 - MIR SINE MIR -65 197 73 1115 214 114 80 chr3 12248872 12249329 -205787829 + MER113 DNA MER1_type? 6 483 -38 2012 118 74 6 chr3 12249329 12249667 -205787491 + MER46B DNA MER2_type 1 236 0 1115 214 114 80 chr3 12249667 12249708 -205787450 + MER113 DNA MER1_type? 483 521 0 199 254 48 16 chr3 12249874 12249937 -205787221 + L2 LINE L2 3249 3313 0 2089 209 47 10 chr3 12249948 12250435 -205786723 + MLT1D LTR MaLR 1 505 0 206 278 102 46 chr3 12250660 12250768 -205786390 - L2 LINE L2 -11 3261 3148 333 68 0 0 chr3 12250843 12250887 -205786271 + (CA)n Simple_repeat Simple_repeat 1 44 0 715 303 84 9 chr3 12250888 12251221 -205785937 + L1ME4a LINE L1 5681 6038 -83 949 239 41 18 chr3 12251263 12251481 -205785677 - MER58A DNA MER1_type 0 224 2 450 0 0 0 chr3 12252280 12252330 -205784828 + (TG)n Simple_repeat Simple_repeat 2 51 0 244 191 138 64 chr3 12252833 12252927 -205784231 + MIR SINE MIR 104 204 -58 287 229 29 0 chr3 12253346 12253416 -205783742 + MIR SINE MIR 54 125 -83 1998 152 0 16 chr3 12253551 12253866 -205783292 - AluJb SINE Alu -2 310 1 645 277 36 111 chr3 12254491 12255175 -205781983 + L2 LINE L2 2367 2984 -288 2747 82 6 3 chr3 12255175 12255529 -205781629 + THE1A LTR MaLR 1 355 0 645 277 36 111 chr3 12255529 12255550 -205781608 + L2 LINE L2 2984 3005 -267 375 200 120 0 chr3 12255572 12255672 -205781486 + MIR SINE MIR 141 252 -10 2135 130 0 10 chr3 12255798 12256122 -205781036 - AluSx SINE Alu 0 312 1 265 332 58 63 chr3 12256265 12256765 -205780393 - L2 LINE L2 0 3272 2772 255 200 20 0 chr3 12257268 12257318 -205779840 + L2 LINE L2 2978 3028 -244 377 275 87 29 chr3 12257754 12257892 -205779266 - MIR SINE MIR -34 228 83 216 67 0 0 chr3 12258880 12258910 -205778248 + (GGA)n Simple_repeat Simple_repeat 1 30 0 2345 97 3 3 chr3 12259660 12259970 -205777188 + AluSg SINE Alu 1 310 0 908 278 50 42 chr3 12260106 12260506 -205776652 + MLT1H LTR MaLR 1 403 -146 489 260 84 101 chr3 12260645 12261099 -205776059 - L2 LINE L2 0 3272 2827 228 67 0 0 chr3 12261520 12261550 -205775608 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 646 179 32 8 chr3 12262784 12262907 -205774251 + L2 LINE L2 3181 3306 -7 234 81 0 0 chr3 12263114 12263151 -205774007 + (TC)n Simple_repeat Simple_repeat 2 38 0 988 248 48 22 chr3 12263449 12263825 -205773333 + LTR16A LTR ERVL 26 450 0 604 187 134 53 chr3 12264002 12264173 -205772985 - MIR SINE MIR 0 262 78 435 267 93 0 chr3 12265436 12265597 -205771561 + Charlie8 DNA MER1_type 53 228 -2189 863 266 67 57 chr3 12265728 12266540 -205770618 - L1MEd LINE L1 -856 1634 845 2546 51 0 0 chr3 12266557 12266850 -205770308 - AluY SINE Alu -18 293 1 1992 120 157 19 chr3 12267805 12268181 -205768977 - MSTA LTR MaLR 0 428 1 622 254 225 0 chr3 12268209 12268418 -205768740 - MIR SINE MIR 0 262 7 292 229 156 21 chr3 12269270 12269366 -205767792 - MIR SINE MIR -103 159 51 435 101 14 0 chr3 12270336 12270405 -205766753 + L1PA15 LINE L1 6087 6156 -9 608 201 255 0 chr3 12270758 12270907 -205766251 + MIR SINE MIR 12 198 -64 2423 183 82 19 chr3 12270922 12271447 -205765711 + MLT1F1 LTR MaLR 1 558 -9 195 209 0 149 chr3 12271460 12271527 -205765631 + MIR SINE MIR 190 246 -16 1574 161 92 69 chr3 12271600 12272047 -205765111 + L1MC4 LINE L1 6985 7441 -601 284 258 27 30 chr3 12272128 12272283 -205764875 - MIR SINE MIR -27 235 34 2487 147 70 2 chr3 12272612 12273055 -205764103 + L1MB3 LINE L1 5704 6176 -7 510 179 51 26 chr3 12273471 12273588 -205763570 + MIR SINE MIR 87 206 -56 821 290 67 0 chr3 12273633 12273857 -205763301 + MIR SINE MIR 13 251 -11 246 274 24 12 chr3 12274635 12274719 -205762439 - MIR SINE MIR -12 250 166 1853 71 5 0 chr3 12274721 12274945 -205762213 - AluSp SINE Alu -2 311 87 206 295 16 0 chr3 12274945 12275006 -205762152 - MIR SINE MIR -114 94 33 1981 145 3 0 chr3 12275011 12275340 -205761818 - AluSx SINE Alu 0 330 1 189 224 259 35 chr3 12275605 12275721 -205761437 - MIR3 SINE MIR -62 146 5 476 308 162 32 chr3 12276301 12276812 -205760346 + L2 LINE L2 2712 3272 0 465 257 142 0 chr3 12276961 12277074 -205760084 + L2 LINE L2 3142 3270 -2 484 232 92 30 chr3 12277103 12277267 -205759891 + MLT1J LTR MaLR 11 184 -327 306 252 148 26 chr3 12277282 12277437 -205759721 + MLT1J LTR MaLR 303 476 -35 313 385 65 6 chr3 12277456 12277807 -205759351 + L2 LINE L2 582 953 -2361 461 253 41 41 chr3 12278737 12278883 -205758275 - MIR SINE MIR -50 212 67 246 182 45 0 chr3 12279617 12279661 -205757497 + MIR SINE MIR 5 50 -212 * 547 287 126 12 chr3 12279650 12279817 -205757341 - MER91A DNA MER1_type -10 186 1 * 709 282 44 5 chr3 12279817 12280020 -205757138 + MIR SINE MIR 51 261 -1 299 313 188 16 chr3 12280031 12280287 -205756871 - L2 LINE L2 -86 3186 2887 335 207 283 24 chr3 12280591 12280726 -205756432 + MIR3 SINE MIR 12 183 -25 202 239 30 0 chr3 12281436 12281523 -205755635 - MIR SINE MIR -84 124 82 442 260 192 23 chr3 12282058 12282230 -205754928 + MIR SINE MIR 21 212 -50 26 74 0 0 chr3 12282338 12282392 -205754766 + AT_rich Low_complexity Low_complexity 1 54 0 1430 204 95 41 chr3 12282515 12282833 -205754325 - MLT1C LTR MaLR 0 467 117 2155 138 0 28 chr3 12282833 12283153 -205754005 - AluJb SINE Alu -1 311 1 1430 204 95 41 chr3 12283153 12283276 -205753882 - MLT1C LTR MaLR -350 117 2 236 370 65 5 chr3 12284183 12284367 -205752791 - L2 LINE L2 -79 3193 2999 192 276 114 9 chr3 12284366 12284471 -205752687 + L2 LINE L2 2897 3012 -260 * 1699 157 134 3 chr3 12284738 12285088 -205752070 + L1MB3 LINE L1 5788 6183 0 281 228 0 38 chr3 12285126 12285205 -205751953 + GA-rich Low_complexity Low_complexity 4 79 0 182 384 0 0 chr3 12285241 12285314 -205751844 - MIR SINE MIR -7 255 183 210 215 161 43 chr3 12285481 12285574 -205751584 - MIR SINE MIR -50 212 109 409 321 60 30 chr3 12285984 12286152 -205751006 + L2 LINE L2 3097 3269 -3 414 348 41 37 chr3 12286557 12286638 -205750520 + MIR SINE MIR 13 92 -170 2227 122 0 0 chr3 12286638 12286933 -205750225 - AluSg SINE Alu -15 295 1 414 348 41 37 chr3 12286933 12287095 -205750063 + MIR SINE MIR 92 257 -5 265 301 14 0 chr3 12287127 12287200 -205749958 + MER103 DNA DNA 90 163 -3 2308 152 56 12 chr3 12287232 12287640 -205749518 - MSTB LTR MaLR 0 426 1 486 291 66 22 chr3 12287850 12288032 -205749126 - L2 LINE L2 -3 3310 3121 262 210 51 65 chr3 12288053 12288191 -205748967 - L2 LINE L2 -331 2982 2847 1182 289 57 28 chr3 12288483 12288699 -205748459 + MLT1K LTR MaLR 4 212 -264 2068 146 3 0 chr3 12288699 12289007 -205748151 + AluJb SINE Alu 1 309 -3 1182 289 57 28 chr3 12289007 12289250 -205747908 + MLT1K LTR MaLR 212 476 0 273 279 125 10 chr3 12289277 12289381 -205747777 - MIR SINE MIR -69 139 24 629 269 203 9 chr3 12289990 12290202 -205746956 + MIR SINE MIR 7 259 -3 269 238 159 0 chr3 12290520 12290615 -205746543 - MIR SINE MIR -95 113 13 209 361 0 14 chr3 12290594 12290666 -205746492 + L2 LINE L2 3219 3289 -24 * 207 321 69 50 chr3 12291505 12291664 -205745494 - L3 LINE CR1 -20 1557 1396 416 281 81 24 chr3 12291724 12291898 -205745260 + MIR SINE MIR 19 209 -53 1477 226 118 19 chr3 12292041 12292509 -205744649 - MLT1E2 LTR MaLR -1 625 112 260 253 53 21 chr3 12292509 12292604 -205744554 + MLT1C LTR MaLR 1 98 -369 2274 129 0 3 chr3 12292606 12292916 -205744242 + AluSx SINE Alu 1 309 -3 27 0 0 0 chr3 12292945 12292972 -205744186 + AT_rich Low_complexity Low_complexity 1 27 0 971 201 104 44 chr3 12292972 12293336 -205743822 + MLT1C LTR MaLR 82 467 0 2074 128 0 28 chr3 12293352 12293672 -205743486 - AluJo SINE Alu -1 311 1 302 209 200 12 chr3 12293672 12293763 -205743395 - MLT1D LTR MaLR -406 99 8 303 244 23 122 chr3 12294014 12294186 -205742972 + MIR SINE MIR 107 261 -1 238 234 129 53 chr3 12294213 12294384 -205742774 + L1ME4a LINE L1 5932 6115 -6 288 0 0 0 chr3 12294482 12294514 -205742644 + (CA)n Simple_repeat Simple_repeat 2 33 0 437 253 99 31 chr3 12295012 12295174 -205741984 + MIR SINE MIR 1 173 -89 181 273 0 73 chr3 12295304 12295359 -205741799 - L2 LINE L2 -85 3187 3137 376 69 48 18 chr3 12295725 12295793 -205741365 + AluSq/x SINE Alu 76 137 -165 1798 147 22 56 chr3 12296228 12296548 -205740610 - AluJo SINE Alu 0 312 4 189 374 148 30 chr3 12296814 12297180 -205739978 + L2 LINE L2 2853 3261 -11 283 365 41 14 chr3 12297202 12297347 -205739811 - MIR SINE MIR -15 247 99 2272 48 0 0 chr3 12297682 12297955 -205739203 - L1PA7 LINE L1 -5 6149 5877 280 207 0 0 chr3 12298802 12298860 -205738298 + L1ME3A LINE L1 6102 6159 -11 357 254 105 0 chr3 12299098 12299212 -205737946 - MIR3 SINE MIR -4 204 79 253 186 0 0 chr3 12300223 12300266 -205736892 - MSTA LTR MaLR -385 43 1 389 264 27 0 chr3 12300305 12300415 -205736743 + MER117 DNA MER1_type 1 113 -84 239 298 123 18 chr3 12300466 12300580 -205736578 - MIR3 SINE MIR -48 160 35 650 263 72 16 chr3 12300634 12300828 -205736330 - MIR SINE MIR -1 261 57 264 308 39 10 chr3 12301631 12301735 -205735423 + L2 LINE L2 2951 3057 -215 231 149 0 21 chr3 12302010 12302057 -205735101 + L1ME4a LINE L1 6073 6118 -3 553 287 114 59 chr3 12302210 12302400 -205734758 - L2 LINE L2 -191 3081 2903 2609 157 31 2 chr3 12302400 12302815 -205734343 + MSTA LTR MaLR 1 427 -1 553 287 114 59 chr3 12302815 12302838 -205734320 - L2 LINE L2 -369 2903 2883 3037 176 25 68 chr3 12302838 12303470 -205733688 + MER77 LTR ERV1 1 605 0 553 287 114 59 chr3 12303470 12303932 -205733226 - L2 LINE L2 -389 2883 2370 625 262 140 4 chr3 12304939 12305168 -205731990 + MIR SINE MIR 3 262 0 472 276 115 13 chr3 12305307 12305463 -205731695 - MIR3 SINE MIR -22 186 15 478 202 19 0 chr3 12305539 12305643 -205731515 + LTR16A1 LTR ERVL 18 123 -334 1610 200 17 3 chr3 12305686 12306031 -205731127 + MER63B DNA MER1_type 1 350 -86 680 262 56 25 chr3 12306103 12306389 -205730769 + LTR16A1 LTR ERVL 158 452 -5 2031 162 0 0 chr3 12306389 12306698 -205730460 + AluJo SINE Alu 1 309 -3 222 194 32 16 chr3 12307183 12307245 -205729913 + T-rich Low_complexity Low_complexity 2 64 0 238 176 0 0 chr3 12307247 12307298 -205729860 - L1MB3 LINE L1 -1 6182 6132 228 335 68 0 chr3 12307310 12307501 -205729657 - MER113 DNA MER1_type? -313 208 5 469 293 29 7 chr3 12307501 12307641 -205729517 - MIR3 SINE MIR -51 157 15 248 333 37 9 chr3 12308075 12308183 -205728975 + MIR SINE MIR 43 153 -109 210 263 200 27 chr3 12308262 12308410 -205728748 - MIR SINE MIR -62 200 22 274 150 50 0 chr3 12308571 12308631 -205728527 + MER103 DNA DNA 93 155 -11 542 245 148 0 chr3 12309174 12309329 -205727829 + MER45A DNA AcHobo 1 178 0 325 205 167 39 chr3 12309334 12309412 -205727746 + L2 LINE L2 3147 3234 -38 405 310 136 11 chr3 12310180 12310364 -205726794 - L1ME4a LINE L1 -225 5896 5690 195 316 84 21 chr3 12311057 12311152 -205726006 - L2 LINE L2 -1 3312 3212 562 287 75 11 chr3 12311429 12311603 -205725555 + MER5A DNA MER1_type 2 186 -3 476 224 48 40 chr3 12312544 12312669 -205724489 - MIR SINE MIR -7 255 130 404 306 135 12 chr3 12313519 12313771 -205723387 + LTR16A LTR ERVL 55 337 -113 376 226 54 0 chr3 12314003 12314096 -205723062 + MIR SINE MIR 47 144 -64 538 258 65 97 chr3 12314197 12314476 -205722682 + L2 LINE L2 3002 3271 -1 215 222 0 0 chr3 12314567 12314603 -205722555 - MIR SINE MIR -71 191 156 1571 174 32 9 chr3 12315854 12316170 -205720988 - MER33 DNA MER1_type 0 324 2 2594 143 22 4 chr3 12316405 12316859 -205720299 + L1MB3 LINE L1 5707 6168 -15 585 298 76 25 chr3 12316920 12317118 -205720040 - MIR SINE MIR -37 225 18 1488 273 48 36 chr3 12317130 12317718 -205719440 + L2 LINE L2 2718 3311 -2 266 257 48 67 chr3 12317722 12317749 -205719409 - MIR SINE MIR -61 201 175 516 243 27 0 chr3 12317749 12317860 -205719298 + MER81 DNA DNA 1 114 0 266 257 48 67 chr3 12317860 12317937 -205719221 - MIR SINE MIR -87 175 99 243 365 139 0 chr3 12318029 12318187 -205718971 + MIR SINE MIR 8 180 -62 1033 257 5 21 chr3 12318196 12318597 -205718561 - LTR16A LTR ERVL 0 450 16 355 283 115 37 chr3 12319449 12319640 -205717518 + MIR SINE MIR 23 228 -34 337 313 55 50 chr3 12319915 12320116 -205717042 + L1MC4a LINE L1 5135 5336 -810 531 319 52 19 chr3 12320129 12320546 -205716612 + L1MC4a LINE L1 5394 5799 -322 * 2135 215 19 24 chr3 12320503 12321038 -205716120 + L1MB7 LINE L1 5639 6170 -14 998 177 27 16 chr3 12321045 12321231 -205715927 + AluJo SINE Alu 121 308 -4 2048 133 0 16 chr3 12321258 12321566 -205715592 + AluSx SINE Alu 1 303 -9 1981 157 0 25 chr3 12322372 12322691 -205714467 - AluJo SINE Alu -1 311 1 2261 96 17 0 chr3 12323155 12323448 -205713710 + AluSc SINE Alu 1 298 -11 345 319 124 9 chr3 12323458 12323571 -205713587 + L2 LINE L2 3144 3269 -3 534 337 37 0 chr3 12323652 12323839 -205713319 - MER91A DNA MER1_type -1 195 2 735 279 95 65 chr3 12324249 12324803 -205712355 + L2 LINE L2 2594 3189 -124 327 49 0 0 chr3 12324832 12324873 -205712285 + (CA)n Simple_repeat Simple_repeat 2 42 0 483 281 58 18 chr3 12324997 12325168 -205711990 - MIR SINE MIR -57 205 28 332 285 133 30 chr3 12326009 12326174 -205710984 - MIR3 SINE MIR -9 199 18 2868 163 16 12 chr3 12326201 12326704 -205710454 + MLT2B3 LTR ERVL 3 507 -47 252 279 0 0 chr3 12326706 12326767 -205710391 + (CA)n Simple_repeat Simple_repeat 2 62 0 247 125 71 54 chr3 12326767 12326823 -205710335 + MLT2B3 LTR ERVL 464 520 0 397 306 29 18 chr3 12326965 12327135 -205710023 + MER20B DNA MER1_type 8 179 -604 259 300 38 0 chr3 12327367 12327447 -205709711 - MIR SINE MIR -118 144 62 2163 208 22 7 chr3 12327450 12327912 -205709246 + L1MB3 LINE L1 5715 6183 0 180 0 0 0 chr3 12328327 12328347 -205708811 + (CACAC)n Simple_repeat Simple_repeat 1 20 0 404 281 103 27 chr3 12328707 12328853 -205708305 + L3 LINE CR1 967 1123 -454 393 216 27 0 chr3 12329179 12329290 -205707868 - MER117 DNA MER1_type -83 114 1 2255 123 0 16 chr3 12329314 12329686 -205707472 - AluSx SINE Alu 0 367 1 800 166 93 7 chr3 12329657 12329686 -205707472 - AluJo SINE Alu -148 164 139 278 49 0 24 chr3 12329686 12329727 -205707431 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 837 144 0 0 chr3 12329730 12329848 -205707310 - FLAM_C SINE Alu -15 118 1 421 300 232 9 chr3 12329851 12330084 -205707074 + L3 LINE CR1 1244 1528 -49 3060 135 4 21 chr3 12330234 12330283 -205706875 + L1MA4 LINE L1 5784 5832 -468 2103 108 40 3 chr3 12330283 12330580 -205706578 + AluY SINE Alu 1 308 -3 3060 135 4 21 chr3 12330580 12331044 -205706114 + L1MA4 LINE L1 5832 6293 -7 187 266 47 16 chr3 12331398 12331462 -205705696 + L3 LINE CR1 650 715 -862 1522 165 0 22 chr3 12331976 12332249 -205704909 + AluJo SINE Alu 15 281 -31 26 30 0 0 chr3 12332258 12332291 -205704867 + AT_rich Low_complexity Low_complexity 1 33 0 298 257 124 26 chr3 12332719 12332832 -205704326 + MLT1K LTR MaLR 128 251 -337 228 291 18 45 chr3 12333126 12333236 -205703922 + LTR67 LTR ERVL 447 553 -4 1128 229 5 0 chr3 12333814 12334019 -205703139 + MER58A DNA MER1_type 1 206 -18 377 279 118 0 chr3 12334080 12334216 -205702942 + MER103 DNA DNA 14 165 -1 305 258 129 8 chr3 12336045 12336177 -205700981 + L3 LINE CR1 1230 1377 -200 936 265 73 34 chr3 12336439 12336767 -205700391 - MER102b DNA MER1_type 0 341 1 450 248 71 71 chr3 12337033 12337231 -205699927 - L3 LINE CR1 -5 1572 1375 688 240 67 19 chr3 12337231 12337439 -205699719 - L3 LINE CR1 -561 1016 799 947 252 75 69 chr3 12337705 12338023 -205699135 - MER102b DNA MER1_type -10 331 12 672 265 112 19 chr3 12338084 12338299 -205698859 - MIR SINE MIR 0 262 28 560 273 13 27 chr3 12338928 12339078 -205698080 - Charlie8 DNA MER1_type -2174 243 96 2727 13 0 3 chr3 12339493 12339804 -205697354 + AluYb8 SINE Alu 1 310 -8 467 274 233 5 chr3 12340608 12340804 -205696354 - MIR SINE MIR 0 262 23 830 271 54 4 chr3 12340817 12341057 -205696101 - MIR SINE MIR -2 260 9 389 269 167 21 chr3 12341060 12341246 -205695912 - L3 LINE CR1 -858 719 507 1547 161 57 10 chr3 12341302 12341600 -205695558 + AluJo SINE Alu 1 312 0 237 319 149 35 chr3 12342321 12342462 -205694696 - L2 LINE L2 -25 3247 3091 323 260 102 68 chr3 12342524 12342701 -205694457 - MIR SINE MIR -70 192 10 231 88 0 0 chr3 12343236 12343270 -205693888 + (CA)n Simple_repeat Simple_repeat 2 35 0 557 172 11 132 chr3 12343407 12343581 -205693577 - MER5A DNA MER1_type -34 155 3 533 250 88 29 chr3 12343808 12344012 -205693146 - MIR SINE MIR -8 254 39 217 213 0 24 chr3 12344536 12344616 -205692542 + L2 LINE L2 3137 3309 -4 208 323 129 0 chr3 12346202 12346326 -205690832 + MIR SINE MIR 2 141 -121 510 227 8 59 chr3 12346349 12346468 -205690690 - L2 LINE L2 0 3313 3201 209 152 0 0 chr3 12346555 12346588 -205690570 - MER91B DNA MER1_type -127 63 31 234 296 0 26 chr3 12346595 12346710 -205690448 - L2 LINE L2 -119 3194 3083 * 264 221 78 39 chr3 12346707 12346784 -205690374 + MIR SINE MIR 169 248 -14 317 281 53 9 chr3 12346797 12346911 -205690247 - MIR SINE MIR -64 198 80 230 351 54 12 chr3 12347213 12347381 -205689777 - L2 LINE L2 -225 3047 2873 293 244 67 22 chr3 12348852 12348942 -205688216 - MER20B DNA MER1_type -604 179 86 353 371 84 6 chr3 12349716 12349883 -205687275 + L2 LINE L2 3078 3257 -15 2212 110 7 0 chr3 12349889 12350197 -205686961 + AluSg SINE Alu 1 310 0 1632 232 8 19 chr3 12350358 12350725 -205686433 - MLT1A2 LTR MaLR -11 363 1 356 233 123 0 chr3 12350908 12350981 -205686177 - MIR SINE MIR -158 104 23 538 240 44 35 chr3 12351855 12352066 -205685092 + MIR SINE MIR 1 212 -50 1050 279 75 19 chr3 12352161 12352574 -205684584 + MLT1K LTR MaLR 39 474 -114 495 184 0 44 chr3 12352715 12352829 -205684329 - L1MB8 LINE L1 0 6178 6070 744 137 22 38 chr3 12352852 12353035 -205684123 + CT-rich Low_complexity Low_complexity 1 180 0 202 182 0 0 chr3 12353035 12353068 -205684090 + polypyrimidine Low_complexity Low_complexity 4 36 0 1606 204 47 40 chr3 12353068 12353081 -205684077 - L1MB5 LINE L1 -101 6073 6062 1678 160 13 26 chr3 12353081 12353388 -205683770 - AluJo SINE Alu -9 303 1 1606 204 47 40 chr3 12353388 12353799 -205683359 - L1MB5 LINE L1 -112 6062 5650 512 358 23 23 chr3 12354644 12354904 -205682254 + MIR SINE MIR 1 260 -2 465 100 43 0 chr3 12355417 12355487 -205681671 - MSTB LTR MaLR -5 427 355 543 171 135 9 chr3 12355487 12355598 -205681560 + FLAM_C SINE Alu 5 129 -14 1540 171 122 0 chr3 12355600 12355887 -205681271 - MSTB LTR MaLR -68 358 37 265 333 101 32 chr3 12355921 12356110 -205681048 - MIR SINE MIR -40 222 21 198 194 0 90 chr3 12356293 12356360 -205680798 - MIR SINE MIR -143 119 59 287 233 83 30 chr3 12356751 12356884 -205680274 + L1ME4a LINE L1 5910 6049 -72 * 1024 180 29 57 chr3 12356881 12356960 -205680198 + L1MB2 LINE L1 5933 6013 -158 2390 74 0 3 chr3 12356960 12357272 -205679886 - AluY SINE Alu 0 311 1 1024 180 29 57 chr3 12357272 12357437 -205679721 + L1MB2 LINE L1 6013 6170 -1 428 359 50 39 chr3 12357515 12357796 -205679362 + L2 LINE L2 2827 3110 -162 2933 110 17 5 chr3 12357853 12358271 -205678887 + MSTA LTR MaLR 5 427 -1 908 77 8 0 chr3 12358718 12358835 -205678323 + MER20 DNA MER1_type 30 147 -72 904 283 93 51 chr3 12358835 12359414 -205677744 - L2 LINE L2 -50 3263 2639 1243 158 38 0 chr3 12359414 12359623 -205677535 + MER20 DNA MER1_type 3 219 0 904 283 93 51 chr3 12359623 12359741 -205677417 - L2 LINE L2 -674 2639 2527 2028 133 0 0 chr3 12360567 12360861 -205676297 + AluSx SINE Alu 1 294 -18 270 331 88 0 chr3 12361442 12361590 -205675568 - MER103 DNA DNA -5 161 1 284 223 138 43 chr3 12362024 12362118 -205675040 - L2 LINE L2 -8 3305 3203 239 313 0 12 chr3 12362140 12362220 -205674938 + MIR3 SINE MIR 98 176 -32 394 319 40 12 chr3 12362524 12362690 -205674468 + MIR SINE MIR 35 204 -58 1594 166 27 114 chr3 12363096 12363267 -205673891 + MLT1A2 LTR MaLR 4 121 -253 1718 151 10 13 chr3 12363267 12363571 -205673587 + AluJb SINE Alu 3 305 -7 1594 166 27 114 chr3 12363571 12363803 -205673355 + MLT1A2 LTR MaLR 121 372 -2 1977 113 0 0 chr3 12363830 12364133 -205673025 + AluSx SINE Alu 7 309 0 1899 160 7 0 chr3 12364163 12364456 -205672702 - AluJo SINE Alu -17 295 1 318 303 96 53 chr3 12364493 12364816 -205672342 - L2 LINE L2 -42 3230 2894 2243 105 0 0 chr3 12364825 12365120 -205672038 + AluSx SINE Alu 2 296 -16 748 241 113 55 chr3 12365262 12365536 -205671622 + Charlie8 DNA MER1_type 1 275 -2142 638 386 39 19 chr3 12366040 12366403 -205670755 + L3 LINE CR1 66 435 -1142 405 296 70 14 chr3 12366427 12366569 -205670589 + L3 LINE CR1 968 1117 -460 630 224 46 33 chr3 12366610 12366762 -205670396 + Charlie8 DNA MER1_type 123 276 -2141 552 220 58 94 chr3 12366993 12367113 -205670045 + L3 LINE CR1 1265 1375 -202 1981 143 0 0 chr3 12367113 12367413 -205669745 + AluSx SINE Alu 1 300 -12 552 220 58 94 chr3 12367413 12367515 -205669643 + L3 LINE CR1 1375 1479 -98 358 247 75 58 chr3 12368007 12368181 -205668977 + MIR SINE MIR 84 260 -2 26 0 0 0 chr3 12368613 12368639 -205668519 + AT_rich Low_complexity Low_complexity 1 26 0 233 262 0 8 chr3 12370750 12370872 -205666286 + (CA)n Simple_repeat Simple_repeat 1 121 0 727 306 43 25 chr3 12371605 12371929 -205665229 - MLT1K LTR MaLR -220 368 39 538 240 44 35 chr3 12372024 12372235 -205664923 - MIR SINE MIR -50 212 1 356 233 123 0 chr3 12373110 12373183 -205663975 + MIR SINE MIR 23 104 -158 1632 232 8 19 chr3 12373366 12373733 -205663425 + MLT1A2 LTR MaLR 1 363 -11 2193 114 7 0 chr3 12373894 12374202 -205662956 - AluSg SINE Alu 0 310 1 600 361 104 27 chr3 12374208 12374807 -205662351 - L2 LINE L2 -15 3257 2570 353 341 61 30 chr3 12374962 12375323 -205661835 + L2 LINE L2 2566 2937 -377 1398 158 3 92 chr3 12375480 12375808 -205661350 - AluJo SINE Alu -13 299 1 809 224 6 0 chr3 12375875 12376040 -205661118 + MER3 DNA MER1_type 7 125 -84 29421 97 8 55 chr3 12376048 12382590 -205654568 + L1PA7 LINE L1 1 6154 0 399 274 80 0 chr3 12382640 12382753 -205654405 + L2 LINE L2 3191 3312 -1 203 125 21 21 chr3 12382835 12382883 -205654275 + T-rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr3 12383118 12383138 -205654020 + (TCC)n Simple_repeat Simple_repeat 2 21 0 181 342 39 32 chr3 12384039 12384194 -205652964 - MIR SINE MIR -13 249 94 386 217 17 43 chr3 12384216 12384331 -205652827 + MLT1E LTR MaLR 283 394 -199 1009 174 73 108 chr3 12384331 12384754 -205652404 + MLT1A2 LTR MaLR 1 390 0 858 204 0 58 chr3 12384762 12384968 -205652190 + MLT1E LTR MaLR 400 593 0 326 227 59 59 chr3 12385203 12385322 -205651836 + MIR3 SINE MIR 5 123 -85 376 150 25 0 chr3 12386077 12386157 -205651001 + GA-rich Low_complexity Low_complexity 3 84 0 750 207 95 0 chr3 12386170 12386339 -205650819 - MER5A DNA MER1_type -4 185 1 1181 217 34 0 chr3 12386528 12386791 -205650367 + L1ME2 LINE L1 5893 6164 0 221 148 19 37 chr3 12386825 12386879 -205650279 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2021 133 3 3 chr3 12387264 12387565 -205649593 + AluSx SINE Alu 1 301 -11 452 279 97 20 chr3 12387565 12387883 -205649275 + LTR16A LTR ERVL 75 444 -6 3774 153 29 43 chr3 12388449 12389211 -205647947 - L1MB3 LINE L1 -2 6181 5431 1979 129 3 17 chr3 12389211 12389505 -205647653 - MER1B DNA MER1_type -4 335 46 2922 183 16 11 chr3 12389518 12390178 -205646980 - L1MB3 LINE L1 -736 5444 4779 332 349 39 0 chr3 12390252 12390381 -205646777 + L2 LINE L2 3125 3258 -14 333 239 0 0 chr3 12390602 12390673 -205646485 - LTR1B LTR ERV1 -81 745 675 382 260 20 0 chr3 12390787 12390887 -205646271 - MIR SINE MIR -5 257 156 235 271 82 0 chr3 12390976 12391061 -205646097 - MIR SINE MIR -53 209 118 242 297 68 8 chr3 12391359 12391477 -205645681 + L2 LINE L2 3143 3267 -5 224 271 24 0 chr3 12392119 12392204 -205644954 - MIR SINE MIR -15 247 161 715 273 32 10 chr3 12392245 12392524 -205644634 - LTR16B LTR ERVL -2 462 88 191 0 0 94 chr3 12392573 12392605 -205644553 + (T)n Simple_repeat Simple_repeat 1 29 0 7455 50 0 3 chr3 12392619 12393959 -205643199 - L1PA6 LINE L1 0 6154 4820 2000 132 0 4 chr3 12394185 12394466 -205642692 - AluJb SINE Alu -15 297 18 1206 119 0 23 chr3 12394567 12394612 -205642546 - AluSq SINE Alu -136 177 133 2325 93 16 7 chr3 12394612 12394922 -205642236 - AluSq SINE Alu 0 313 1 1206 119 0 23 chr3 12394922 12395053 -205642105 - AluSq SINE Alu -180 133 5 25 0 0 0 chr3 12395116 12395141 -205642017 + AT_rich Low_complexity Low_complexity 1 25 0 1469 160 95 0 chr3 12395149 12395412 -205641746 + AluJb SINE Alu 1 288 -24 194 305 62 23 chr3 12396519 12396647 -205640511 - L2 LINE L2 -1293 2021 1889 2249 121 0 0 chr3 12396718 12397025 -205640133 - AluSx SINE Alu -5 307 1 442 264 153 32 chr3 12399071 12399287 -205637871 - MIR SINE MIR -6 256 15 411 213 12 0 chr3 12399287 12399367 -205637791 - MER7A DNA MER2_type 0 336 256 2327 110 0 0 chr3 12399398 12399699 -205637459 + AluSx SINE Alu 1 301 -11 257 206 40 103 chr3 12399714 12399840 -205637318 - MER101 LTR ERV1 -29 445 328 663 243 83 69 chr3 12399887 12400175 -205636983 - MER101B LTR ERV1 -278 292 1 * 1427 142 52 4 chr3 12400175 12400394 -205636764 - MER7A DNA MER2_type -118 228 1 222 286 168 0 chr3 12400571 12400690 -205636468 + MIR SINE MIR 101 239 -23 582 270 155 9 chr3 12400769 12401107 -205636051 + MLT1H LTR MaLR 122 534 -15 245 245 21 21 chr3 12401534 12401628 -205635530 + CT-rich Low_complexity Low_complexity 3 96 0 437 248 39 31 chr3 12401649 12401778 -205635380 + L2 LINE L2 3183 3312 -1 287 187 0 93 chr3 12401765 12401840 -205635318 + MIR SINE MIR 184 251 -11 * 23 68 0 0 chr3 12402230 12402274 -205634884 + AT_rich Low_complexity Low_complexity 1 44 0 260 237 0 26 chr3 12403706 12403782 -205633376 + CT-rich Low_complexity Low_complexity 3 76 0 26 30 0 0 chr3 12404693 12404726 -205632432 + AT_rich Low_complexity Low_complexity 1 33 0 899 196 31 0 chr3 12404748 12404911 -205632247 + AluJb SINE Alu 136 303 -9 677 89 0 0 chr3 12404981 12405071 -205632087 + AluS SINE Alu 2 91 -222 1947 98 0 4 chr3 12405071 12405325 -205631833 + AluSq SINE Alu 54 306 -7 1054 163 11 0 chr3 12405649 12405833 -205631325 + AluJo SINE Alu 121 306 -6 244 164 36 0 chr3 12406513 12406568 -205630590 + G-rich Low_complexity Low_complexity 1 57 0 239 85 17 51 chr3 12406716 12406775 -205630383 + (TTC)n Simple_repeat Simple_repeat 1 57 0 770 196 0 0 chr3 12406794 12406927 -205630231 - FLAM_C SINE Alu 0 133 1 1023 236 115 55 chr3 12407049 12407193 -205629965 - L2 LINE L2 0 3313 3179 2142 109 7 0 chr3 12407193 12407478 -205629680 - AluSx SINE Alu -15 297 11 1023 236 115 55 chr3 12407478 12407499 -205629659 - L2 LINE L2 -134 3179 3161 2000 119 48 14 chr3 12407499 12407794 -205629364 - AluSx SINE Alu -7 305 1 1023 236 115 55 chr3 12407794 12408179 -205628979 - L2 LINE L2 -152 3161 2707 1831 169 0 22 chr3 12408179 12408498 -205628660 - AluJo SINE Alu 0 312 1 1023 236 115 55 chr3 12408498 12408545 -205628613 - L2 LINE L2 -606 2707 2664 2290 90 0 13 chr3 12408744 12409077 -205628081 + AluSx SINE Alu 1 312 0 1599 231 12 6 chr3 12409439 12409777 -205627381 + MER58B DNA MER1_type 1 340 -1 2308 112 0 0 chr3 12410017 12410313 -205626845 - AluSx SINE Alu -16 296 1 513 306 92 54 chr3 12410320 12410876 -205626282 - MLT1L LTR MaLR 0 615 39 302 324 29 0 chr3 12411028 12411133 -205626025 + MIR SINE MIR 42 149 -59 234 240 0 0 chr3 12411241 12411291 -205625867 + L2 LINE L2 3264 3313 0 1820 159 14 0 chr3 12411327 12411622 -205625536 - AluJb SINE Alu -13 299 1 313 235 79 107 chr3 12411880 12412287 -205624871 - MLT1H LTR MaLR -14 535 11 308 286 38 23 chr3 12412842 12413009 -205624149 - HAL1b LINE L1 -2 6119 1222 2287 108 0 0 chr3 12413040 12413328 -205623830 - AluSx SINE Alu -24 288 1 228 235 86 0 chr3 12413349 12413430 -205623728 - L1ME LINE L1 -365 5797 5710 702 174 0 0 chr3 12413929 12414038 -205623120 + FLAM_C SINE Alu 2 110 -33 222 274 47 105 chr3 12414118 12414308 -205622850 + MIR SINE MIR 76 254 -8 1218 181 185 8 chr3 12415231 12415490 -205621668 - AluSg1 SINE Alu -4 305 1 198 0 0 0 chr3 12415746 12415768 -205621390 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2296 114 0 0 chr3 12415770 12416076 -205621082 - AluSx SINE Alu -6 306 1 728 142 40 114 chr3 12416934 12417016 -205620142 - MER46A DNA MER2_type -2522 209 145 2336 96 3 0 chr3 12417016 12417319 -205619839 - AluSg SINE Alu -6 304 1 728 142 40 114 chr3 12417319 12417412 -205619746 - MER46A DNA MER2_type -2586 145 47 374 220 50 40 chr3 12417729 12417829 -205619329 + L2 LINE L2 3168 3268 -4 358 303 86 13 chr3 12417837 12417989 -205619169 - MIR SINE MIR -50 212 50 285 266 64 37 chr3 12419234 12419343 -205617815 - MIR3 SINE MIR -92 116 5 291 264 0 0 chr3 12419620 12419692 -205617466 - MER34 LTR ERV1 -469 73 2 * 1492 159 172 99 chr3 12419692 12420057 -205617101 - MER21A LTR ERV1 -530 401 9 917 148 10 91 chr3 12420057 12420208 -205616950 - L1MB7 LINE L1 -354 5830 5699 1707 188 3 0 chr3 12420208 12420500 -205616658 - AluJo SINE Alu -17 295 3 917 148 10 91 chr3 12420500 12420557 -205616601 - L1MB7 LINE L1 -485 5699 5639 484 198 0 0 chr3 12420560 12420641 -205616517 - Tigger5 DNA MER2_type 0 2323 2243 340 182 0 0 chr3 12420654 12420709 -205616449 - Tigger5 DNA MER2_type -2268 55 1 1185 169 59 72 chr3 12420710 12420781 -205616377 - L1MB7 LINE L1 -538 5636 5566 1997 161 14 30 chr3 12420781 12421142 -205616016 - THE1A LTR MaLR 0 355 1 1185 169 59 72 chr3 12421142 12421377 -205615781 - L1MB7 LINE L1 -608 5566 5327 1796 183 3 7 chr3 12421377 12421677 -205615481 - AluJb SINE Alu -13 299 1 1185 169 59 72 chr3 12421677 12421742 -205615416 - L1MB7 LINE L1 -847 5327 5263 4037 169 20 6 chr3 12421783 12422436 -205614722 + MER72 LTR ERV1 1 662 -60 2066 146 20 0 chr3 12422436 12422737 -205614421 - AluSx SINE Alu -5 307 1 2330 107 0 0 chr3 12422764 12423062 -205614096 - AluSg SINE Alu -12 298 1 232 250 0 0 chr3 12423286 12423342 -205613816 - L1MC/D LINE L1 -1876 5932 5877 1371 168 71 27 chr3 12423350 12423431 -205613727 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2142 139 0 0 chr3 12423431 12423740 -205613418 + AluSg SINE Alu 1 309 -1 1371 168 71 27 chr3 12423740 12423995 -205613163 - Tigger4(Zombi) DNA MER2_type -76 2655 2 347 229 122 15 chr3 12424031 12424162 -205612996 - L1MC/D LINE L1 -309 5812 5668 235 231 31 31 chr3 12424402 12424467 -205612691 - HAL1b LINE L1 -444 904 840 354 241 27 9 chr3 12424594 12424706 -205612452 - HAL1b LINE L1 -552 796 683 320 277 54 0 chr3 12424736 12424848 -205612310 - HAL1b LINE L1 -787 561 444 1893 181 0 3 chr3 12424855 12425148 -205612010 - AluJb SINE Alu -20 292 1 1400 137 4 26 chr3 12425148 12425381 -205611777 - MER2 DNA MER2_type -107 238 11 531 273 148 14 chr3 12426046 12426255 -205610903 + MIR SINE MIR 14 250 -12 1861 132 15 4 chr3 12426280 12426552 -205610606 - AluSg SINE Alu -13 297 23 510 120 0 13 chr3 12426794 12426869 -205610289 + MER39B LTR ERV1 557 630 -23 2551 146 27 50 chr3 12426880 12427324 -205609834 + MER21A LTR ERV1 495 928 -3 1263 200 20 84 chr3 12427324 12427640 -205609518 + L1MB7 LINE L1 5827 6119 -65 1743 114 0 0 chr3 12427640 12427868 -205609290 + AluSg/x SINE Alu 73 300 -10 1263 200 20 84 chr3 12427868 12427906 -205609252 + L1MB7 LINE L1 6119 6158 -26 478 181 11 0 chr3 12428009 12428103 -205609055 + MER113 DNA MER1_type? 188 282 -239 509 209 0 0 chr3 12428200 12428286 -205608872 + FLAM_A SINE Alu 1 86 -56 563 110 37 209 chr3 12428289 12428452 -205608706 + L1MB5 LINE L1 5832 5966 -208 1742 142 67 0 chr3 12428492 12428760 -205608398 - AluJb SINE Alu -26 286 1 915 221 69 86 chr3 12428829 12428976 -205608182 - MER39 LTR ERV1 -19 688 540 513 0 0 0 chr3 12428976 12429033 -205608125 + (TG)n Simple_repeat Simple_repeat 2 58 0 1575 184 14 28 chr3 12429033 12429321 -205607837 - AluJo SINE Alu -28 284 1 915 221 69 86 chr3 12429321 12429362 -205607796 - MER39 LTR ERV1 -166 541 501 730 179 0 30 chr3 12429362 12429496 -205607662 - FLAM_A SINE Alu -2 131 2 915 221 69 86 chr3 12429496 12429839 -205607319 - MER39 LTR ERV1 -206 501 1 274 306 12 0 chr3 12429959 12430044 -205607114 - MER97b DNA MER1_type? -874 179 94 4891 142 45 44 chr3 12430218 12430294 -205606864 + Charlie1a DNA MER1_type 1 75 -2686 1910 171 3 10 chr3 12430294 12430599 -205606559 - AluJb SINE Alu -9 303 1 4891 142 45 44 chr3 12430599 12431063 -205606095 + Charlie1a DNA MER1_type 75 537 -2224 1531 183 78 46 chr3 12431063 12431473 -205605685 + LTR37A LTR ERV1 4 426 0 4891 142 45 44 chr3 12431473 12431906 -205605252 + Charlie1a DNA MER1_type 537 968 -1793 1992 120 3 19 chr3 12431906 12432214 -205604944 + AluSx SINE Alu 1 303 -9 4891 142 45 44 chr3 12432214 12432366 -205604792 + Charlie1a DNA MER1_type 968 1118 -1643 2262 103 30 0 chr3 12432366 12432666 -205604492 + AluSx SINE Alu 1 309 -3 4891 142 45 44 chr3 12432666 12433015 -205604143 + Charlie1a DNA MER1_type 1118 1451 -4 226 319 92 50 chr3 12433163 12433182 -205603976 - MIR SINE MIR 0 262 245 1931 135 25 0 chr3 12433182 12433480 -205603678 + AluSx SINE Alu 1 305 0 226 319 92 50 chr3 12433480 12433574 -205603584 - MIR SINE MIR -17 245 156 258 32 0 0 chr3 12433574 12433605 -205603553 + (TAA)n Simple_repeat Simple_repeat 3 33 0 226 319 92 50 chr3 12433605 12433727 -205603431 - MIR SINE MIR -106 156 15 190 304 72 14 chr3 12433750 12433819 -205603339 + MIR3 SINE MIR 82 154 -54 2355 89 0 3 chr3 12435335 12435638 -205601520 + AluSg SINE Alu 1 302 -8 455 250 93 63 chr3 12435813 12436022 -205601136 + MLT1K LTR MaLR 40 326 -262 734 148 139 0 chr3 12436040 12436155 -205601003 - AluSp SINE Alu -46 267 137 463 180 180 23 chr3 12436217 12436389 -205600769 + MLT1K LTR MaLR 378 576 -12 275 258 186 16 chr3 12436395 12436519 -205600639 - MIR3 SINE MIR -75 133 3 185 235 222 0 chr3 12436659 12436740 -205600418 - MIR SINE MIR -108 154 56 1945 180 11 22 chr3 12436987 12437342 -205599816 - MLT1A1 LTR MaLR 0 365 15 1042 177 0 6 chr3 12437342 12437517 -205599641 - AluSg/x SINE Alu -5 305 132 2241 109 0 26 chr3 12437517 12437830 -205599328 - AluSx SINE Alu -7 305 1 322 234 57 81 chr3 12437857 12437981 -205599177 + MIR SINE MIR 85 205 -57 718 239 56 0 chr3 12438023 12438203 -205598955 - MIR SINE MIR -59 203 14 2254 114 0 3 chr3 12438423 12438722 -205598436 + AluSg SINE Alu 1 298 -12 777 189 0 0 chr3 12439101 12439228 -205597930 - FLAM_C SINE Alu -5 128 2 2268 137 30 35 chr3 12439309 12439675 -205597483 - THE1B LTR MaLR 0 364 1 821 137 0 8 chr3 12441151 12441275 -205595883 + AluJo SINE Alu 12 134 -178 434 287 171 5 chr3 12441326 12441386 -205595772 + MIR SINE MIR 7 56 -206 1755 170 3 10 chr3 12441386 12441675 -205595483 + AluJo SINE Alu 1 287 -25 434 287 171 5 chr3 12441675 12441830 -205595328 + MIR SINE MIR 56 258 -4 919 181 0 0 chr3 12441903 12442052 -205595106 - AluJb SINE Alu -26 286 138 1012 217 58 4 chr3 12442095 12442353 -205594805 - L1ME3 LINE L1 -1 6161 5890 1054 79 0 0 chr3 12442498 12442625 -205594533 + 7SLRNA srpRNA srpRNA 75 201 -119 2198 104 13 7 chr3 12443032 12443330 -205593828 - AluSx SINE Alu -10 302 3 203 239 0 70 chr3 12443716 12443787 -205593371 + MIR SINE MIR 163 228 -34 1960 175 68 0 chr3 12443805 12444131 -205593027 - MER7A DNA MER2_type 0 346 1 230 222 143 0 chr3 12444227 12444290 -205592868 - L2 LINE L2 -1 3312 3241 628 286 38 5 chr3 12444976 12445161 -205591997 + MIR SINE MIR 54 244 -18 180 0 0 0 chr3 12445379 12445399 -205591759 + (TG)n Simple_repeat Simple_repeat 2 21 0 1848 135 18 7 chr3 12445546 12445850 -205591308 - AluSx SINE Alu 0 307 1 22 0 0 0 chr3 12447309 12447331 -205589827 + AT_rich Low_complexity Low_complexity 1 22 0 1757 157 11 0 chr3 12447879 12448165 -205588993 - AluJb SINE Alu -23 289 1 312 326 73 59 chr3 12448268 12448556 -205588602 - L2 LINE L2 -38 3234 2943 28 61 0 0 chr3 12448927 12448976 -205588182 + AT_rich Low_complexity Low_complexity 1 49 0 1639 183 7 10 chr3 12449108 12449403 -205587755 - AluJo SINE Alu -16 296 3 536 240 185 7 chr3 12449534 12449680 -205587478 - MER5A DNA MER1_type 0 189 18 21 0 0 0 chr3 12449826 12449847 -205587311 + AT_rich Low_complexity Low_complexity 1 21 0 2602 57 0 13 chr3 12449933 12450248 -205586910 - AluY SINE Alu 0 311 1 1520 189 23 27 chr3 12450890 12451191 -205585967 - AluJo SINE Alu -12 300 1 2139 117 7 10 chr3 12451789 12452089 -205585069 - AluSx SINE Alu -13 299 1 2071 113 21 0 chr3 12453028 12453310 -205583848 + AluSq SINE Alu 1 288 -25 252 145 133 121 chr3 12455279 12455362 -205581796 + MLT1B LTR MaLR 1 84 -306 182 313 0 62 chr3 12455630 12455694 -205581464 + MIR SINE MIR 36 95 -113 399 184 61 41 chr3 12456704 12456802 -205580356 - Charlie1 DNA MER1_type -255 2506 2407 853 172 77 107 chr3 12456810 12456915 -205580243 - Charlie1 DNA MER1_type -613 2148 2041 1644 126 22 0 chr3 12456915 12457146 -205580012 + AluSx SINE Alu 1 236 -76 853 172 77 107 chr3 12457146 12457301 -205579857 - Charlie1 DNA MER1_type -720 2041 1896 1308 241 100 47 chr3 12457303 12457775 -205579383 - Charlie1 DNA MER1_type -977 1784 1228 1059 198 171 0 chr3 12457775 12458033 -205579125 - MER2 DNA MER2_type 0 345 44 2289 188 202 59 chr3 12458088 12458496 -205578662 - Charlie1 DNA MER1_type -1524 1237 889 1209 208 36 46 chr3 12458496 12458799 -205578359 + AluJo SINE Alu 1 300 -12 2289 188 202 59 chr3 12458799 12459423 -205577735 - Charlie1 DNA MER1_type -1872 889 57 180 278 103 52 chr3 12459650 12459747 -205577411 + L2 LINE L2 2538 2639 -675 249 253 76 13 chr3 12459749 12459828 -205577330 + MIR SINE MIR 62 145 -117 3494 118 135 38 chr3 12459857 12460238 -205576920 - Tigger1 DNA MER2_type 0 2418 2075 1945 133 43 7 chr3 12460238 12460539 -205576619 - AluSx SINE Alu 0 312 1 3494 118 135 38 chr3 12460539 12460815 -205576343 - Tigger1 DNA MER2_type -343 2075 1697 191 167 0 48 chr3 12462070 12462112 -205575046 - MIR SINE MIR -6 256 217 1600 157 34 27 chr3 12462583 12462877 -205574281 + AluJb SINE Alu 1 296 -16 339 164 0 15 chr3 12463442 12463509 -205573649 - Charlie5 DNA MER1_type -2505 107 42 1153 90 131 95 chr3 12464041 12464263 -205572895 + MER30 DNA MER1_type 1 230 0 22 56 0 0 chr3 12468247 12468283 -205568875 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr3 12469385 12469414 -205567744 + AT_rich Low_complexity Low_complexity 1 29 0 280 331 61 25 chr3 12470009 12470172 -205566986 - MIR SINE MIR -91 171 3 837 172 16 123 chr3 12470952 12471196 -205565962 - MER20 DNA MER1_type 0 219 2 335 326 157 54 chr3 12471233 12471622 -205565536 - L2 LINE L2 -16 3256 2828 315 203 0 0 chr3 12471637 12471711 -205565447 + (ATG)n Simple_repeat Simple_repeat 1 74 0 697 257 34 0 chr3 12471712 12471887 -205565271 - MIR SINE MIR -8 254 74 2167 107 17 0 chr3 12471935 12472225 -205564933 - AluSx SINE Alu -17 295 1 446 226 196 98 chr3 12472262 12472463 -205564695 - MLT1H LTR MaLR 0 549 369 2249 110 3 3 chr3 12472463 12472772 -205564386 - AluSc SINE Alu 0 309 1 2325 114 0 0 chr3 12472777 12473083 -205564075 - AluSx SINE Alu -6 306 1 446 226 196 98 chr3 12473083 12473375 -205563783 - MLT1H LTR MaLR -183 366 1 480 305 106 4 chr3 12473577 12473708 -205563450 - MIR SINE MIR -2 260 144 2221 157 12 54 chr3 12473708 12473938 -205563220 - MLT1B LTR MaLR 0 390 183 2248 113 0 0 chr3 12473938 12474239 -205562919 - AluSx SINE Alu -11 301 1 2221 157 12 54 chr3 12474239 12474415 -205562743 - MLT1B LTR MaLR -207 183 1 480 305 106 4 chr3 12474415 12474519 -205562639 - MIR SINE MIR -118 144 1 1624 157 0 0 chr3 12474731 12474973 -205562185 + AluJb SINE Alu 64 305 -7 870 273 66 12 chr3 12475030 12475272 -205561886 - MIR SINE MIR 0 262 8 4748 161 15 6 chr3 12475423 12476236 -205560922 + L1MB3 LINE L1 5364 6183 0 353 211 122 0 chr3 12476283 12476373 -205560785 - HAL1 LINE L1 -2390 117 17 450 0 0 0 chr3 12477111 12477161 -205559997 + (CA)n Simple_repeat Simple_repeat 2 51 0 215 31 31 0 chr3 12477295 12477327 -205559831 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6629 73 20 0 chr3 12477327 12478367 -205558791 - L1PA13 LINE L1 -12 6151 5143 270 160 0 0 chr3 12478800 12478850 -205558308 + T-rich Low_complexity Low_complexity 1 50 0 1072 181 51 0 chr3 12479513 12479690 -205557468 + MER5A DNA MER1_type 1 186 -3 1051 253 78 38 chr3 12479701 12480199 -205556959 - MER113 DNA MER1_type? 0 521 4 357 24 0 0 chr3 12480215 12480257 -205556901 + (TG)n Simple_repeat Simple_repeat 1 42 0 382 274 30 85 chr3 12480845 12481009 -205556149 + MER112 DNA MER1_type 15 169 -91 348 274 15 99 chr3 12481073 12481274 -205555884 - MER5A DNA MER1_type -4 185 2 425 269 45 6 chr3 12481518 12481674 -205555484 + L1MEd LINE L1 2 163 -5956 2151 119 0 10 chr3 12481739 12482034 -205555124 - AluSx SINE Alu -20 292 1 800 280 121 74 chr3 12482079 12482661 -205554497 + L1MEd LINE L1 265 818 -5311 2022 138 0 7 chr3 12482661 12482959 -205554199 + AluSx SINE Alu 1 296 -16 800 280 121 74 chr3 12482959 12482984 -205554174 + L1MEd LINE L1 818 840 -5289 1975 146 7 7 chr3 12482984 12483285 -205553873 + AluJo SINE Alu 1 301 -11 800 280 121 74 chr3 12483285 12483423 -205553735 + L1MEd LINE L1 840 970 -5159 2208 129 3 3 chr3 12483423 12483733 -205553425 + AluSq SINE Alu 1 310 -3 800 280 121 74 chr3 12483733 12484099 -205553059 + L1MEd LINE L1 970 1433 -4696 1392 188 4 0 chr3 12484099 12484338 -205552820 - L1PB4 LINE L1 -7 6149 5910 800 280 121 74 chr3 12484338 12484545 -205552613 + L1MEd LINE L1 1433 1629 -4500 1912 152 0 3 chr3 12484572 12484874 -205552284 + AluJb SINE Alu 5 305 -7 2408 50 0 0 chr3 12484964 12485245 -205551913 + AluY SINE Alu 6 286 -25 664 171 267 0 chr3 12486366 12486512 -205550646 - MER5A DNA MER1_type -4 185 1 1783 181 3 16 chr3 12487289 12487604 -205549554 + AluJb SINE Alu 1 311 -1 445 261 43 9 chr3 12487808 12487923 -205549235 - MIR SINE MIR -62 200 82 999 266 84 68 chr3 12488740 12488979 -205548179 + MLT1K LTR MaLR 189 438 -150 2982 116 19 7 chr3 12488979 12489400 -205547758 + MSTA LTR MaLR 3 428 0 999 266 84 68 chr3 12489400 12489554 -205547604 + MLT1K LTR MaLR 438 588 0 1276 216 150 41 chr3 12489654 12490111 -205547047 + MLT1G3 LTR MaLR 21 593 0 427 201 223 14 chr3 12490124 12490263 -205546895 + MER117 DNA MER1_type 4 171 -26 2385 117 44 0 chr3 12490329 12490695 -205546463 + L1PA13 LINE L1 5799 6179 0 548 217 255 27 chr3 12490747 12490931 -205546227 + MIR SINE MIR 23 248 -14 2248 117 9 20 chr3 12491126 12491467 -205545691 + MER1B DNA MER1_type 1 337 -2 1926 214 87 37 chr3 12491502 12492040 -205545118 + L1ME1 LINE L1 5600 6164 -2 492 205 73 40 chr3 12492048 12492199 -205544959 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 12492495 12492521 -205544637 + (CA)n Simple_repeat Simple_repeat 2 27 0 3193 105 16 2 chr3 12492562 12492990 -205544168 - MER57B LTR ERV1 0 434 1 12840 106 91 59 chr3 12492990 12493367 -205543791 - MER57B-int LTR ERV1 0 7537 7174 2421 68 0 3 chr3 12493367 12493662 -205543496 + AluY SINE Alu 1 294 -17 12840 106 91 59 chr3 12493662 12495446 -205541712 - MER57B-int LTR ERV1 -363 7174 5307 6073 130 57 28 chr3 12495437 12497097 -205540061 - MER57B-int LTR ERV1 -1702 4273 2186 * 331 78 59 0 chr3 12497093 12497144 -205540014 - MER57B-int LTR ERV1 -3726 2220 2167 * 4767 150 55 21 chr3 12497120 12498635 -205538523 - MER57B-int LTR ERV1 -4159 2371 288 4346 140 29 6 chr3 12498632 12499289 -205537869 - MER57B-int LTR ERV1 -6865 672 1 * 3043 120 21 2 chr3 12499289 12499715 -205537443 - MER57B LTR ERV1 0 434 1 389 266 0 39 chr3 12499730 12499858 -205537300 + L1ME4a LINE L1 5987 6109 -12 477 237 50 36 chr3 12499911 12500050 -205537108 - MIR SINE MIR -5 257 117 578 235 150 43 chr3 12500255 12500695 -205536463 + MLT1H LTR MaLR 3 555 0 2085 131 3 0 chr3 12500808 12501111 -205536047 - AluSx SINE Alu 0 304 1 22 0 0 0 chr3 12501798 12501820 -205535338 + AT_rich Low_complexity Low_complexity 1 22 0 228 184 0 0 chr3 12502350 12502399 -205534759 + CT-rich Low_complexity Low_complexity 2 50 0 190 301 118 11 chr3 12502524 12502617 -205534541 - L2 LINE L2 -8 3264 3162 32 0 0 0 chr3 12502730 12502762 -205534396 + AT_rich Low_complexity Low_complexity 1 32 0 230 140 53 0 chr3 12502849 12502906 -205534252 + L1MD3 LINE L1 7936 7995 0 342 250 93 9 chr3 12503485 12503593 -205533565 + MIR SINE MIR 64 180 -82 291 194 16 0 chr3 12503663 12503725 -205533433 - Charlie8 DNA MER1_type -1008 1409 1347 533 214 219 16 chr3 12503726 12503913 -205533245 - MLT1A2 LTR MaLR 0 549 325 397 220 83 133 chr3 12503914 12504155 -205533003 - Charlie8 DNA MER1_type -2186 231 3 724 173 0 8 chr3 12504272 12504399 -205532759 + MER5A DNA MER1_type 1 126 -63 664 240 0 0 chr3 12504416 12504545 -205532613 - MER5B DNA MER1_type 0 178 50 183 80 0 0 chr3 12504886 12504911 -205532247 + (TCTCCC)n Simple_repeat Simple_repeat 3 27 0 251 89 67 0 chr3 12505703 12505748 -205531410 + CT-rich Low_complexity Low_complexity 3 50 0 1542 201 7 0 chr3 12505748 12506022 -205531136 - AluJo SINE Alu -36 276 1 211 327 78 65 chr3 12506106 12506259 -205530899 - L2 LINE L2 -292 2980 2826 392 157 135 22 chr3 12506305 12506394 -205530764 - MLT2D LTR ERVL -1 396 298 801 144 0 8 chr3 12506408 12506526 -205530632 - FLAM_C SINE Alu -13 130 14 1297 174 64 77 chr3 12506531 12506858 -205530300 - MLT2D LTR ERVL -91 323 1 1596 216 92 22 chr3 12506899 12507269 -205529889 + MSTD LTR MaLR 1 396 0 286 315 164 25 chr3 12507631 12508034 -205529124 - L2 LINE L2 -665 2649 2191 300 281 48 68 chr3 12508588 12508734 -205528424 + MIR SINE MIR 25 167 -95 216 325 68 34 chr3 12508757 12508874 -205528284 - L2 LINE L2 -5 3308 3188 772 240 168 41 chr3 12508973 12509265 -205527893 - MER102a DNA MER1_type 0 330 2 1219 217 53 53 chr3 12510395 12510754 -205526404 - MLT1A2 LTR MaLR -15 359 1 180 0 0 0 chr3 12511162 12511182 -205525976 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 903 110 0 0 chr3 12511187 12511305 -205525853 - AluSq/x SINE Alu -195 118 1 832 286 67 0 chr3 12561473 12561697 -205475461 + MIR SINE MIR 13 251 -11 246 274 24 12 chr3 12562475 12562559 -205474599 - MIR SINE MIR -12 250 166 1846 72 5 0 chr3 12562562 12562785 -205474373 - AluSp SINE Alu -3 310 87 206 295 16 0 chr3 12562785 12562846 -205474312 - MIR SINE MIR -114 94 33 1990 145 3 0 chr3 12562851 12563164 -205473994 - AluSx SINE Alu 0 314 1 189 224 259 35 chr3 12563429 12563545 -205473613 - MIR3 SINE MIR -62 146 5 196 330 73 43 chr3 12563967 12564200 -205472958 + L2 LINE L2 2546 2785 -529 246 279 34 32 chr3 12564349 12564496 -205472662 - MIR SINE MIR -44 218 2 330 300 169 25 chr3 12564611 12564771 -205472387 - MIR3 SINE MIR -6 202 20 238 349 46 0 chr3 12565346 12565455 -205471703 - MIR SINE MIR -117 145 32 234 333 30 0 chr3 12566070 12566169 -205470989 - MER103 DNA DNA -2 164 63 1062 169 62 5 chr3 12566365 12566560 -205470598 + MER1B DNA MER1_type 4 209 -88 332 228 69 50 chr3 12566660 12566761 -205470397 + L2 LINE L2 3173 3275 -38 557 298 26 37 chr3 12567230 12567421 -205469737 - MIR3 SINE MIR -3 205 17 23 0 0 0 chr3 12567466 12567489 -205469669 + AT_rich Low_complexity Low_complexity 1 23 0 3749 187 30 21 chr3 12567489 12568188 -205468970 - L1MB7 LINE L1 -77 6107 5399 2152 141 13 0 chr3 12568188 12568492 -205468666 - AluJb SINE Alu -4 308 1 3749 187 30 21 chr3 12568492 12568568 -205468590 - L1MB7 LINE L1 -785 5399 5325 846 135 8 23 chr3 12568568 12568701 -205468457 - FLAM_C SINE Alu -2 131 1 413 276 40 63 chr3 12569035 12569209 -205467949 - L2 LINE L2 0 3272 3103 233 274 281 38 chr3 12569234 12569497 -205467661 + L2 LINE L2 2425 2751 -563 189 324 88 0 chr3 12569511 12569613 -205467545 + L2 LINE L2 2964 3074 -198 1159 234 100 30 chr3 12569615 12570055 -205467103 + MLT1H1 LTR MaLR 18 488 -67 448 269 115 0 chr3 12570185 12570289 -205466869 + L2 LINE L2 3157 3272 0 189 240 160 0 chr3 12570297 12570372 -205466786 - L2 LINE L2 -167 3105 3019 183 402 12 0 chr3 12570508 12570590 -205466568 + L2 LINE L2 3189 3271 -1 217 291 103 51 chr3 12570609 12570726 -205466432 + MIR SINE MIR 19 141 -67 435 267 93 0 chr3 12571946 12572107 -205465051 + Charlie8 DNA MER1_type 53 228 -2189 851 269 68 56 chr3 12572238 12573049 -205464109 - L1MEd LINE L1 -858 1632 845 2604 44 0 0 chr3 12573066 12573359 -205463799 - AluY SINE Alu -18 293 1 2420 90 63 0 chr3 12574139 12574473 -205462685 + THE1A LTR MaLR 1 355 0 201 158 26 0 chr3 12574546 12574584 -205462574 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 219 320 33 65 chr3 12575065 12575218 -205461940 + L2 LINE L2 2911 3058 -255 907 171 50 11 chr3 12575227 12575408 -205461750 + MER5A DNA MER1_type 1 188 -1 367 273 61 0 chr3 12575429 12575528 -205461630 + L2 LINE L2 3141 3245 -27 205 229 53 135 chr3 12575557 12575727 -205461431 - L2 LINE L2 -246 3026 2871 747 219 43 12 chr3 12575801 12575965 -205461193 + MER5B DNA MER1_type 4 172 -6 1916 166 7 0 chr3 12575976 12576271 -205460887 + AluJo SINE Alu 1 297 -15 206 308 70 92 chr3 12576287 12576690 -205460468 - L2 LINE L2 -557 2757 2364 1064 163 16 0 chr3 12577507 12577691 -205459467 - MER5A DNA MER1_type -2 187 1 284 263 124 25 chr3 12578117 12578280 -205458878 + MIR3 SINE MIR 21 171 -37 876 239 84 66 chr3 12578776 12579348 -205457810 - L1ME4a LINE L1 -18 6103 5522 310 219 0 0 chr3 12579362 12579426 -205457732 + L2 LINE L2 3200 3263 -9 206 283 0 0 chr3 12579432 12579478 -205457680 + MIR SINE MIR 106 151 -57 621 269 26 52 chr3 12579582 12579850 -205457308 + MIR SINE MIR 2 262 0 2074 211 47 10 chr3 12580478 12580965 -205456193 - MLT1D LTR MaLR 0 505 1 199 254 48 16 chr3 12580976 12581039 -205456119 - L2 LINE L2 0 3313 3249 1084 222 110 76 chr3 12581205 12581246 -205455912 - MER113 DNA MER1_type? 0 521 483 1961 121 74 9 chr3 12581246 12581585 -205455573 - MER46B DNA MER2_type 0 236 1 1084 222 110 76 chr3 12581585 12582042 -205455116 - MER113 DNA MER1_type? -38 483 6 490 274 8 0 chr3 12583038 12583162 -205453996 + MIR SINE MIR 73 197 -65 568 270 15 7 chr3 12583190 12583327 -205453831 - MIR SINE MIR -105 157 20 273 227 96 18 chr3 12583427 12583526 -205453632 + MIR SINE MIR 28 148 -60 36 116 0 0 chr3 12583998 12584162 -205452996 + AT_rich Low_complexity Low_complexity 1 164 0 22 89 0 0 chr3 12584196 12584241 -205452917 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 12584286 12584314 -205452844 + AT_rich Low_complexity Low_complexity 1 28 0 59 46 0 0 chr3 12584347 12584434 -205452724 + AT_rich Low_complexity Low_complexity 1 87 0 351 295 103 6 chr3 12584833 12584989 -205452169 + LTR16A LTR ERVL 167 337 -113 375 226 54 0 chr3 12585221 12585314 -205451844 + MIR SINE MIR 47 144 -64 529 258 65 97 chr3 12585415 12585694 -205451464 + L2 LINE L2 3002 3271 -1 217 222 0 0 chr3 12585785 12585821 -205451337 - MIR SINE MIR -71 191 156 1592 174 28 9 chr3 12587072 12587389 -205449769 - MER33 DNA MER1_type 0 324 2 2609 141 22 4 chr3 12587624 12588078 -205449080 + L1MB3 LINE L1 5707 6168 -15 513 295 78 26 chr3 12588139 12588332 -205448826 - MIR SINE MIR -37 225 23 1443 276 48 36 chr3 12588348 12588935 -205448223 + L2 LINE L2 2718 3311 -2 267 257 48 67 chr3 12588939 12588966 -205448192 - MIR SINE MIR -61 201 175 498 243 27 0 chr3 12588966 12589077 -205448081 + MER81 DNA DNA 1 114 0 267 257 48 67 chr3 12589077 12589154 -205448004 - MIR SINE MIR -87 175 99 243 365 139 0 chr3 12589246 12589404 -205447754 + MIR SINE MIR 8 180 -62 652 352 0 8 chr3 12589413 12589660 -205447498 - LTR16A LTR ERVL 0 450 206 838 323 114 28 chr3 12591369 12591806 -205445352 - L3 LINE CR1 -8 1569 1095 1978 120 3 7 chr3 12591850 12592149 -205445009 + AluSx SINE Alu 1 298 -14 837 127 0 0 chr3 12592551 12592669 -205444489 + AluJb SINE Alu 1 118 -194 1907 232 38 15 chr3 12592755 12593234 -205443924 + L1ME1 LINE L1 5596 6085 -81 368 283 0 33 chr3 12593257 12593349 -205443809 + MIR3 SINE MIR 103 191 -17 186 71 0 0 chr3 12593760 12593788 -205443370 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 334 305 184 12 chr3 12594295 12594551 -205442607 + L2 LINE L2 2887 3186 -86 711 282 44 5 chr3 12594562 12594765 -205442393 - MIR SINE MIR -1 261 51 534 287 126 12 chr3 12594765 12594932 -205442226 + MER91A DNA MER1_type 1 186 -10 244 182 45 0 chr3 12594921 12594965 -205442193 - MIR SINE MIR -212 50 5 * 431 260 41 41 chr3 12595700 12595846 -205441312 + MIR SINE MIR 67 212 -50 290 385 65 6 chr3 12596775 12597126 -205440032 - L2 LINE L2 -2361 953 582 514 220 147 39 chr3 12597145 12597477 -205439681 - MLT1J LTR MaLR -35 476 11 462 257 142 0 chr3 12597506 12597619 -205439539 - L2 LINE L2 -2 3270 3142 249 313 131 28 chr3 12597768 12597944 -205439214 - L2 LINE L2 0 3313 3120 222 194 32 16 chr3 12598815 12598877 -205438281 + T-rich Low_complexity Low_complexity 2 64 0 245 176 0 0 chr3 12598879 12598930 -205438228 - L1MB3 LINE L1 -1 6182 6132 238 335 68 0 chr3 12598942 12599133 -205438025 - MER113 DNA MER1_type? -313 208 5 470 293 29 7 chr3 12599133 12599273 -205437885 - MIR3 SINE MIR -51 157 15 245 333 37 9 chr3 12599707 12599815 -205437343 + MIR SINE MIR 43 153 -109 207 263 200 27 chr3 12599894 12600042 -205437116 - MIR SINE MIR -62 200 22 289 150 50 0 chr3 12600203 12600263 -205436895 + MER103 DNA DNA 93 155 -11 519 245 148 0 chr3 12600806 12600961 -205436197 + MER45A DNA AcHobo 1 178 0 329 192 167 39 chr3 12600966 12601044 -205436114 + L2 LINE L2 3147 3234 -38 2476 147 70 2 chr3 12602160 12602603 -205434555 - L1MB3 LINE L1 -7 6176 5704 279 258 27 30 chr3 12602932 12603087 -205434071 + MIR SINE MIR 34 235 -27 959 189 115 86 chr3 12603165 12603609 -205433549 - L1MC4 LINE L1 -601 7441 6985 180 224 0 149 chr3 12603682 12603749 -205433409 - MIR SINE MIR -16 246 190 2593 184 80 19 chr3 12603762 12604288 -205432870 - MLT1F1 LTR MaLR -9 558 1 607 201 255 0 chr3 12604303 12604452 -205432706 - MIR SINE MIR -64 198 12 477 100 0 0 chr3 12604805 12604875 -205432283 - L1PA15 LINE L1 -9 6156 6087 928 264 97 36 chr3 12605615 12605945 -205431213 + MLT1K LTR MaLR 84 433 -155 477 0 0 0 chr3 12605952 12606005 -205431153 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 219 289 115 39 chr3 12606125 12606229 -205430929 - L2 LINE L2 -5 3308 3197 272 284 197 0 chr3 12606241 12606368 -205430790 + MLT1K LTR MaLR 419 570 -18 1692 165 0 4 chr3 12607466 12607745 -205429413 - AluJb SINE Alu -22 290 13 667 301 9 19 chr3 12607829 12608040 -205429118 + MIR SINE MIR 47 254 -8 321 307 69 55 chr3 12608056 12608274 -205428884 + L1MC4a LINE L1 5841 6061 -1747 23 33 0 0 chr3 12608354 12608384 -205428774 + AT_rich Low_complexity Low_complexity 1 30 0 284 260 13 13 chr3 12608918 12608995 -205428163 - MIR SINE MIR -115 93 17 278 401 7 0 chr3 12609582 12609719 -205427439 + (TG)n Simple_repeat Simple_repeat 1 138 0 189 107 0 0 chr3 12609814 12609842 -205427316 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 309 259 158 51 chr3 12610270 12610428 -205426730 + MLT1H LTR MaLR 56 230 -319 628 203 17 0 chr3 12610480 12610598 -205426560 + MLT1K LTR MaLR 436 555 0 237 256 77 39 chr3 12610600 12610678 -205426480 + MIR3 SINE MIR 88 168 -40 180 286 24 71 chr3 12610706 12610790 -205426368 - MIR SINE MIR -82 180 101 1820 157 0 25 chr3 12611048 12611366 -205425792 + AluJo SINE Alu 1 310 -2 193 310 103 0 chr3 12611638 12611696 -205425462 - L3 LINE CR1 -934 643 580 1899 133 0 16 chr3 12612171 12612479 -205424679 - AluSx SINE Alu -9 303 1 911 169 28 17 chr3 12612514 12612692 -205424466 - AluJo SINE Alu -12 300 121 2249 215 19 24 chr3 12612699 12613191 -205423967 - L1MB7 LINE L1 -14 6170 5679 535 313 57 32 chr3 12613191 12613608 -205423550 - L1MC4a LINE L1 -297 5824 5394 351 283 115 37 chr3 12614097 12614288 -205422870 - MIR SINE MIR -34 228 23 529 233 200 33 chr3 12615140 12615350 -205421808 + LTR16A LTR ERVL 16 260 -190 1548 153 51 0 chr3 12615816 12616091 -205421067 - AluJo SINE Alu -23 289 1 474 228 102 0 chr3 12616164 12616291 -205420867 + MIR SINE MIR 102 241 -21 352 68 0 0 chr3 12617135 12617179 -205419979 + MIR3 SINE MIR 115 158 -50 1110 178 5 0 chr3 12617180 12617365 -205419793 + MER5A DNA MER1_type 2 187 -2 588 274 58 58 chr3 12617396 12617725 -205419433 - MER102b DNA MER1_type -12 329 1 891 352 115 15 chr3 12618102 12618753 -205418405 + L3 LINE CR1 786 1501 -76 1047 269 97 71 chr3 12618790 12619326 -205417832 + MLT1K LTR MaLR 37 586 -2 354 319 101 29 chr3 12619703 12619910 -205417248 - MIR SINE MIR -6 256 35 246 360 0 0 chr3 12620290 12620365 -205416793 + MER5A DNA MER1_type 112 186 -3 478 224 48 40 chr3 12621306 12621431 -205415727 - MIR SINE MIR -7 255 130 2524 175 60 28 chr3 12621545 12622081 -205415077 - L1MC2 LINE L1 -151 6193 5641 258 113 57 0 chr3 12622082 12622135 -205415023 - L1MC2 LINE L1 0 6344 6289 281 128 64 28 chr3 12622309 12622418 -205414740 + (TA)n Simple_repeat Simple_repeat 1 113 0 810 219 56 85 chr3 12622432 12622518 -205414640 - L1MC2 LINE L1 -1865 5943 5856 1912 138 0 7 chr3 12622518 12622809 -205414349 + AluSx SINE Alu 1 289 -23 810 219 56 85 chr3 12622809 12623041 -205414117 - L1MC2 LINE L1 -1952 5856 5634 511 203 23 73 chr3 12623155 12623332 -205413826 + L1MC5 LINE L1 7758 7925 -36 498 297 36 0 chr3 12623791 12623929 -205413229 - MIR SINE MIR -72 190 48 587 223 192 16 chr3 12624163 12624356 -205412802 + MIR SINE MIR 6 232 -30 699 133 285 0 chr3 12624368 12624526 -205412632 - MER3 DNA MER1_type -6 203 1 408 303 48 37 chr3 12624842 12625030 -205412128 + MIR SINE MIR 21 210 -52 351 275 176 14 chr3 12625105 12625247 -205411911 + MIR SINE MIR 20 184 -78 367 283 87 29 chr3 12626720 12626858 -205410300 + MIR SINE MIR 83 228 -34 253 200 20 0 chr3 12627294 12627344 -205409814 - L2 LINE L2 -244 3028 2978 204 255 123 47 chr3 12628242 12628348 -205408810 + L2 LINE L2 3159 3272 0 1988 125 0 0 chr3 12628491 12628800 -205408358 + AluSx SINE Alu 1 309 0 379 180 140 20 chr3 12628941 12629041 -205408117 - MIR SINE MIR -10 252 141 624 277 36 111 chr3 12629063 12629084 -205408074 - L2 LINE L2 -267 3005 2984 2730 82 6 3 chr3 12629084 12629438 -205407720 - THE1A LTR MaLR 0 355 1 624 277 36 111 chr3 12629438 12630122 -205407036 - L2 LINE L2 -288 2984 2367 191 339 89 9 chr3 12630966 12631078 -205406080 - MIR SINE MIR -113 149 29 402 324 0 10 chr3 12631310 12631412 -205405746 + MIR SINE MIR 32 132 -76 264 280 187 13 chr3 12631417 12631567 -205405591 - MER20B DNA MER1_type -43 176 1 1178 185 94 42 chr3 12631571 12631648 -205405510 - MER33 DNA MER1_type -2261 324 252 1988 141 0 6 chr3 12631648 12631960 -205405198 + AluSx SINE Alu 1 310 -2 1178 185 94 42 chr3 12631960 12632190 -205404968 - MER33 DNA MER1_type -2333 252 1 418 308 55 52 chr3 12632640 12632968 -205404190 + L2 LINE L2 2814 3142 -171 917 139 13 6 chr3 12632989 12633147 -205404011 - AluSg/x SINE Alu -22 290 132 274 263 97 79 chr3 12633150 12633264 -205403894 + L2 LINE L2 3155 3270 -43 21 0 0 0 chr3 12633516 12633537 -205403621 + AT_rich Low_complexity Low_complexity 1 21 0 678 152 0 0 chr3 12634040 12634139 -205403019 - Tigger7 DNA MER2_type 0 2487 2389 * 1292 184 0 107 chr3 12634137 12634436 -205402722 - Tigger7 DNA MER2_type -2220 267 1 892 172 40 0 chr3 12634843 12635017 -205402141 + L1MC3 LINE L1 7605 7785 0 222 91 0 0 chr3 12635320 12635353 -205401805 + (ATG)n Simple_repeat Simple_repeat 1 33 0 500 276 135 5 chr3 12635567 12635759 -205401399 + MIR SINE MIR 33 249 -13 1587 191 0 0 chr3 12635775 12636057 -205401101 + AluJo SINE Alu 1 282 -30 513 84 0 0 chr3 12636059 12636130 -205401028 + (TA)n Simple_repeat Simple_repeat 1 71 0 42 48 0 0 chr3 12636134 12636197 -205400961 + AT_rich Low_complexity Low_complexity 1 63 0 260 212 41 53 chr3 12636352 12636455 -205400703 - L1M4 LINE L1 -1938 4208 4101 264 257 79 0 chr3 12636493 12636594 -205400564 + L1M4 LINE L1 3941 4049 -2097 364 226 55 65 chr3 12636741 12636940 -205400218 - L1M4 LINE L1 -3162 2984 2788 1844 138 7 16 chr3 12636974 12637279 -205399879 - AluJo SINE Alu -5 307 6 385 279 56 101 chr3 12637307 12637949 -205399209 + L1ME3A LINE L1 4708 5320 -826 1146 166 50 22 chr3 12638021 12638299 -205398859 + AluJo SINE Alu 14 299 -13 847 318 61 25 chr3 12638310 12638819 -205398339 + L1ME3A LINE L1 5368 5894 -276 440 115 0 13 chr3 12639447 12639525 -205397633 + (TGGA)n Simple_repeat Simple_repeat 3 79 0 29 28 0 0 chr3 12639696 12639732 -205397426 + AT_rich Low_complexity Low_complexity 1 36 0 21 98 0 0 chr3 12639759 12639810 -205397348 + AT_rich Low_complexity Low_complexity 1 51 0 312 323 54 23 chr3 12640270 12640400 -205396758 - MIR SINE MIR -32 230 97 328 225 67 34 chr3 12640446 12640535 -205396623 - L1MC4 LINE L1 -1339 6703 6612 301 260 10 67 chr3 12640451 12640555 -205396603 + L1MC4 LINE L1 6611 6708 -1334 * 303 286 22 22 chr3 12640695 12640786 -205396372 + L1MC4 LINE L1 6612 6702 -1340 231 185 111 0 chr3 12640799 12640880 -205396278 + L1MC4 LINE L1 6614 6703 -1339 310 264 7 7 chr3 12640883 12641023 -205396135 + (TA)n Simple_repeat Simple_repeat 2 141 0 1718 156 30 3 chr3 12641025 12641320 -205395838 - AluJb SINE Alu -9 303 1 185 259 69 35 chr3 12641328 12641386 -205395772 - L2 LINE L2 -17 3296 3237 851 282 58 47 chr3 12641398 12641577 -205395581 - LTR16A LTR ERVL 0 450 274 4552 95 5 5 chr3 12641577 12642220 -205394938 - L1PA12 LINE L1 -1 6167 5525 851 282 58 47 chr3 12642220 12642405 -205394753 - LTR16A LTR ERVL -176 274 82 273 200 0 80 chr3 12642422 12642497 -205394661 - L2 LINE L2 -86 3227 3159 395 129 0 16 chr3 12642922 12642984 -205394174 - MLT1L LTR MaLR -8 607 547 680 291 66 21 chr3 12643852 12644141 -205393017 + L1MC4a LINE L1 5666 5967 -1841 1421 174 13 0 chr3 12644983 12645212 -205391946 - MLT1A1 LTR MaLR 0 365 134 1157 96 39 0 chr3 12645212 12645368 -205391790 - MSTB LTR MaLR 0 426 265 410 160 20 60 chr3 12646047 12646147 -205391011 - L1ME2 LINE L1 -60 6104 6009 581 228 42 1 chr3 12646152 12646300 -205390858 + L1ME2 LINE L1 5933 6248 -86 378 355 39 20 chr3 12646300 12646503 -205390655 - L2 LINE L2 -376 2938 2732 2530 48 0 6 chr3 12646742 12647053 -205390105 - AluY SINE Alu -2 309 1 352 272 65 19 chr3 12647918 12648073 -205389085 - MIR SINE MIR -62 146 21 184 271 34 17 chr3 12648286 12648345 -205388813 + L2 LINE L2 3246 3305 -8 * 710 267 94 36 chr3 12648344 12648463 -205388695 - L2 LINE L2 -94 3219 3108 1441 198 7 16 chr3 12648463 12648766 -205388392 + AluJo SINE Alu 1 300 -12 710 267 94 36 chr3 12648766 12648923 -205388235 - L2 LINE L2 -205 3108 2927 229 290 43 32 chr3 12649430 12649523 -205387635 + MIR3 SINE MIR 77 170 -38 202 118 20 98 chr3 12649597 12649648 -205387510 - MIR3 SINE MIR -49 159 113 255 265 48 48 chr3 12649686 12649702 -205387456 - MER5B DNA MER1_type -95 83 68 1297 136 3 183 chr3 12649702 12650063 -205387095 - AluJb SINE Alu -16 296 1 255 265 48 48 chr3 12650063 12650129 -205387029 - MER5B DNA MER1_type -109 69 1 508 339 213 26 chr3 12650731 12650941 -205386217 + L3 LINE CR1 321 490 -1087 1573 167 72 10 chr3 12650941 12651234 -205385924 - AluJb SINE Alu -1 311 1 508 339 213 26 chr3 12651234 12651628 -205385530 + L3 LINE CR1 490 1038 -539 2343 76 3 0 chr3 12651632 12651935 -205385223 - AluY SINE Alu -7 304 1 389 218 150 8 chr3 12652056 12652189 -205384969 - L1ME4a LINE L1 -2 6119 5968 240 227 121 0 chr3 12652239 12652305 -205384853 - MIR SINE MIR -98 164 91 726 308 205 25 chr3 12652692 12652757 -205384401 + L2 LINE L2 2229 2281 -1032 1845 216 29 5 chr3 12652757 12653174 -205383984 - L1MB7 LINE L1 -1 6183 5757 726 308 205 25 chr3 12653174 12653817 -205383341 + L2 LINE L2 2281 3052 -261 301 74 19 19 chr3 12653827 12653881 -205383277 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 1760 125 0 46 chr3 12653883 12654164 -205382994 - AluJb SINE Alu -44 268 1 604 156 41 16 chr3 12654165 12654287 -205382871 - MLT1B LTR MaLR -264 126 2 201 352 80 23 chr3 12655195 12655371 -205381787 - L2 LINE L2 -79 3193 3008 1987 165 120 2 chr3 12655744 12656137 -205381021 + L1MB3 LINE L1 5745 6183 0 234 215 13 51 chr3 12656175 12656254 -205380904 + GA-rich Low_complexity Low_complexity 4 79 0 344 339 54 24 chr3 12657035 12657203 -205379955 + L2 LINE L2 3097 3269 -3 381 347 41 41 chr3 12657608 12657689 -205379469 + MIR SINE MIR 13 93 -169 2085 122 0 0 chr3 12657689 12657984 -205379174 - AluSg SINE Alu -15 295 1 381 347 41 41 chr3 12657984 12658147 -205379011 + MIR SINE MIR 92 257 -5 280 288 14 0 chr3 12658179 12658252 -205378906 + MER103 DNA DNA 90 163 -3 2201 157 56 12 chr3 12658284 12658692 -205378466 - MSTB LTR MaLR 0 426 1 464 313 62 0 chr3 12658903 12659031 -205378127 - L2 LINE L2 -3 3269 3134 248 242 61 30 chr3 12659106 12659205 -205377953 - L2 LINE L2 -331 2982 2881 1101 281 56 35 chr3 12659536 12659752 -205377406 + MLT1K LTR MaLR 4 214 -262 1917 144 3 0 chr3 12659752 12660057 -205377101 + AluJb SINE Alu 1 306 -6 1101 281 56 35 chr3 12660057 12660303 -205376855 + MLT1K LTR MaLR 214 476 0 203 308 125 10 chr3 12660330 12660434 -205376724 - MIR SINE MIR -69 139 24 403 252 94 38 chr3 12660901 12661060 -205376098 - MIR SINE MIR 0 262 95 895 277 126 28 chr3 12661600 12662069 -205375089 + MER113 DNA MER1_type? 7 521 0 748 255 101 49 chr3 12662511 12662817 -205374341 + Charlie2 DNA MER1_type 2 323 -2539 1824 114 52 0 chr3 12662817 12663128 -205374030 + AluSg SINE Alu 1 325 0 1292 202 0 8 chr3 12663146 12663393 -205373765 + L1PB4 LINE L1 5908 6152 -4 205 0 0 0 chr3 12663489 12663512 -205373646 + MER5C DNA MER1_type 4 26 -298 1503 155 0 49 chr3 12663516 12663800 -205373358 + AluJo SINE Alu 18 287 -25 385 155 28 28 chr3 12663802 12663873 -205373285 + MER5A DNA MER1_type 10 80 -109 1871 131 0 10 chr3 12663902 12664207 -205372951 - AluSc SINE Alu -7 302 1 1121 158 0 6 chr3 12664227 12664404 -205372754 + AluSg/x SINE Alu 132 307 -5 27 0 0 0 chr3 12664434 12664461 -205372697 + AT_rich Low_complexity Low_complexity 1 27 0 1017 215 116 59 chr3 12664470 12664824 -205372334 + MLT1C LTR MaLR 94 467 0 1904 131 0 25 chr3 12664840 12665160 -205371998 - AluJo SINE Alu 0 312 1 329 205 205 12 chr3 12665168 12665251 -205371907 - MLT1D LTR MaLR -399 106 8 303 244 23 122 chr3 12665502 12665674 -205371484 + MIR SINE MIR 107 261 -1 257 234 129 53 chr3 12665701 12665872 -205371286 + L1ME4a LINE L1 5932 6115 -6 252 0 0 0 chr3 12665970 12665998 -205371160 + (CA)n Simple_repeat Simple_repeat 2 29 0 437 253 99 31 chr3 12666496 12666658 -205370500 + MIR SINE MIR 1 173 -89 400 69 48 18 chr3 12667209 12667277 -205369881 + AluSg/x SINE Alu 74 135 -165 652 263 72 16 chr3 12667709 12667903 -205369255 + MIR SINE MIR 57 261 -1 238 298 123 18 chr3 12667957 12668071 -205369087 + MIR3 SINE MIR 35 160 -48 418 250 26 9 chr3 12668116 12668232 -205368926 - MER117 DNA MER1_type -79 118 1 265 186 0 0 chr3 12668271 12668314 -205368844 + MSTA LTR MaLR 1 43 -385 291 207 0 0 chr3 12669677 12669735 -205367423 - L1ME3A LINE L1 -11 6159 6102 1938 98 0 4 chr3 12670582 12670856 -205366302 + L1PA7 LINE L1 5877 6149 -5 269 372 41 14 chr3 12671191 12671336 -205365822 + MIR SINE MIR 99 247 -15 191 374 148 30 chr3 12671358 12671724 -205365434 - L2 LINE L2 -11 3261 2853 1737 144 22 39 chr3 12671990 12672302 -205364856 + AluJo SINE Alu 4 310 -2 282 229 29 0 chr3 12672446 12672516 -205364642 - MIR SINE MIR -83 125 54 251 191 138 64 chr3 12672935 12673029 -205364129 - MIR SINE MIR -58 204 104 450 0 0 0 chr3 12673532 12673582 -205363576 + (CA)n Simple_repeat Simple_repeat 2 51 0 911 239 41 18 chr3 12674381 12674599 -205362559 + MER58A DNA MER1_type 2 224 0 765 300 84 9 chr3 12674641 12674974 -205362184 - L1ME4a LINE L1 -83 6038 5681 297 75 0 0 chr3 12674975 12675015 -205362143 + (TG)n Simple_repeat Simple_repeat 1 40 0 1134 116 24 0 chr3 12675295 12675459 -205361699 - L1PA10 LINE L1 -25 6143 5976 1014 258 21 0 chr3 12676636 12676869 -205360289 - MIR SINE MIR -1 261 24 2120 104 3 0 chr3 12677424 12677722 -205359436 + AluSg SINE Alu 1 299 -11 348 319 124 9 chr3 12677732 12677845 -205359313 + L2 LINE L2 3144 3269 -3 516 337 37 0 chr3 12677926 12678113 -205359045 - MER91A DNA MER1_type -1 195 2 702 278 68 63 chr3 12678524 12678905 -205358253 + L2 LINE L2 2594 2976 -338 327 49 0 0 chr3 12679107 12679148 -205358010 + (CA)n Simple_repeat Simple_repeat 2 42 0 469 281 58 18 chr3 12679272 12679443 -205357715 - MIR SINE MIR -57 205 28 319 315 127 24 chr3 12680284 12680449 -205356709 - MIR3 SINE MIR -9 199 18 2836 183 16 12 chr3 12680476 12680979 -205356179 + MLT2B3 LTR ERVL 3 507 -47 230 283 0 0 chr3 12680989 12681042 -205356116 + (CA)n Simple_repeat Simple_repeat 2 54 0 247 143 71 54 chr3 12681042 12681098 -205356060 + MLT2B3 LTR ERVL 464 520 0 510 266 47 30 chr3 12681238 12681407 -205355751 + MER20B DNA MER1_type 8 179 -604 252 300 38 0 chr3 12681639 12681719 -205355439 - MIR SINE MIR -118 144 62 2087 212 22 7 chr3 12681722 12682184 -205354974 + L1MB3 LINE L1 5715 6183 0 180 0 0 0 chr3 12682600 12682620 -205354538 + (CACAC)n Simple_repeat Simple_repeat 1 20 0 382 280 93 47 chr3 12682980 12683130 -205354028 + L3 LINE CR1 967 1123 -454 249 233 23 70 chr3 12683204 12683290 -205353868 - 7SK RNA RNA -105 88 7 420 207 27 0 chr3 12683456 12683567 -205353591 - MER117 DNA MER1_type -83 114 1 186 193 0 0 chr3 12683591 12683648 -205353510 + T-rich Low_complexity Low_complexity 3 59 0 2102 119 0 16 chr3 12683652 12683964 -205353194 - AluSx SINE Alu -5 307 1 269 50 0 25 chr3 12683965 12684005 -205353153 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 816 121 9 0 chr3 12684008 12684124 -205353034 - FLAM_C SINE Alu -25 118 2 1724 143 21 7 chr3 12684342 12684622 -205352536 + AluSx SINE Alu 1 284 -28 211 296 28 46 chr3 12885217 12885325 -205151833 + L2 LINE L2 332 437 -2877 2209 116 17 0 chr3 12885426 12885728 -205151430 - AluSx SINE Alu -5 307 1 259 267 57 48 chr3 12886210 12886239 -205150919 + L2 LINE L2 1326 1353 -1961 2102 115 13 29 chr3 12886239 12886552 -205150606 - AluSx SINE Alu -4 308 1 259 267 57 48 chr3 12886552 12886627 -205150531 + L2 LINE L2 1353 1431 -1883 585 314 173 26 chr3 12886997 12887707 -205149451 + L2 LINE L2 1805 2409 -905 2340 147 18 61 chr3 12887707 12888092 -205149066 + MSTB LTR MaLR 1 401 -25 1760 162 17 26 chr3 12888092 12888229 -205148929 + AluJo SINE Alu 1 138 -174 2310 100 0 0 chr3 12888229 12888519 -205148639 + AluSc SINE Alu 1 290 -19 1760 162 17 26 chr3 12888519 12888683 -205148475 + AluJo SINE Alu 138 299 -13 2244 122 0 0 chr3 12888690 12888993 -205148165 + AluSx SINE Alu 1 303 -9 2340 147 18 61 chr3 12888993 12889042 -205148116 + MSTB LTR MaLR 407 424 -2 585 314 173 26 chr3 12889042 12889337 -205147821 + L2 LINE L2 2409 2958 -356 552 194 81 122 chr3 12889861 12889920 -205147238 + MLT1J LTR MaLR 5 65 -446 2314 104 0 0 chr3 12889920 12890217 -205146941 - AluSx SINE Alu -15 297 1 552 194 81 122 chr3 12890217 12890600 -205146558 + MLT1J LTR MaLR 65 500 -11 263 344 0 25 chr3 12892128 12892288 -205144870 + C-rich Low_complexity Low_complexity 4 159 0 350 113 0 42 chr3 12893246 12893317 -205143841 + (CA)n Simple_repeat Simple_repeat 2 69 0 237 65 0 0 chr3 12894621 12894652 -205142506 + (GA)n Simple_repeat Simple_repeat 2 32 0 1974 134 22 0 chr3 12894729 12895006 -205142152 + AluSx SINE Alu 3 285 -27 3730 178 20 18 chr3 12895026 12895690 -205141468 - MER72 LTR ERV1 -57 665 1 1185 169 59 72 chr3 12895731 12895796 -205141362 + L1MB7 LINE L1 5263 5327 -847 1796 183 3 7 chr3 12895796 12896096 -205141062 + AluJb SINE Alu 1 299 -13 1185 169 59 72 chr3 12896096 12896331 -205140827 + L1MB7 LINE L1 5327 5566 -608 1997 161 14 30 chr3 12896331 12896692 -205140466 + THE1A LTR MaLR 1 355 0 1185 169 59 72 chr3 12896692 12896763 -205140395 + L1MB7 LINE L1 5566 5636 -538 340 182 0 0 chr3 12896764 12896819 -205140339 + Tigger5 DNA MER2_type 1 55 -2268 484 198 0 0 chr3 12896832 12896913 -205140245 + Tigger5 DNA MER2_type 2243 2323 0 917 148 10 91 chr3 12896916 12896973 -205140185 + L1MB7 LINE L1 5639 5699 -485 1707 188 3 0 chr3 12896973 12897265 -205139893 + AluJo SINE Alu 3 295 -17 917 148 10 91 chr3 12897265 12897416 -205139742 + L1MB7 LINE L1 5699 5830 -354 1492 159 172 99 chr3 12897416 12897781 -205139377 + MER21A LTR ERV1 9 401 -530 291 264 0 0 chr3 12897781 12897853 -205139305 + MER34 LTR ERV1 2 73 -469 2500 145 61 18 chr3 12897876 12898332 -205138826 + LTR29 LTR ERV1 137 612 -10 2551 146 27 50 chr3 12898339 12898783 -205138375 + MER21A LTR ERV1 495 928 -3 1263 200 20 84 chr3 12898783 12899099 -205138059 + L1MB7 LINE L1 5827 6119 -65 1743 114 0 0 chr3 12899099 12899327 -205137831 + AluSg/x SINE Alu 75 302 -10 1263 200 20 84 chr3 12899327 12899365 -205137793 + L1MB7 LINE L1 6119 6158 -26 478 181 11 0 chr3 12899468 12899562 -205137596 + MER113 DNA MER1_type? 188 282 -239 509 209 0 0 chr3 12899659 12899745 -205137413 + FLAM_A SINE Alu 1 86 -56 563 110 37 209 chr3 12899748 12899911 -205137247 + L1MB5 LINE L1 5832 5966 -208 1149 151 97 0 chr3 12899951 12900136 -205137022 - AluSg/x SINE Alu -26 286 84 491 185 0 0 chr3 12900413 12900494 -205136664 + FLAM_C SINE Alu 30 110 -33 222 274 47 105 chr3 12900574 12900764 -205136394 + MIR SINE MIR 76 254 -8 1264 170 185 8 chr3 12901686 12901945 -205135213 - AluSg1 SINE Alu -4 305 1 198 0 0 0 chr3 12902201 12902223 -205134935 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2296 114 0 0 chr3 12902225 12902531 -205134627 - AluSx SINE Alu -6 306 1 728 142 40 114 chr3 12903389 12903471 -205133687 - MER46A DNA MER2_type -2522 209 145 2336 96 3 0 chr3 12903471 12903774 -205133384 - AluSg SINE Alu -6 304 1 728 142 40 114 chr3 12903774 12903867 -205133291 - MER46A DNA MER2_type -2586 145 47 374 220 50 40 chr3 12904184 12904284 -205132874 + L2 LINE L2 3168 3268 -4 358 303 86 13 chr3 12904292 12904444 -205132714 - MIR SINE MIR -50 212 50 2562 48 0 0 chr3 12905666 12905957 -205131201 + AluY SINE Alu 1 291 -20 860 129 0 0 chr3 12906102 12906218 -205130940 - FLAM_C SINE Alu -17 116 1 2335 107 0 0 chr3 12906245 12906543 -205130615 - AluSg SINE Alu -12 298 1 232 250 0 0 chr3 12906767 12906823 -205130335 - L1MC/D LINE L1 -1876 5932 5877 1371 168 71 27 chr3 12906831 12906912 -205130246 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2369 110 0 0 chr3 12906912 12907222 -205129936 + AluSg SINE Alu 1 310 0 1371 168 71 27 chr3 12907222 12907477 -205129681 - Tigger4(Zombi) DNA MER2_type -76 2655 2 347 248 120 0 chr3 12907515 12907648 -205129510 - L1MC/D LINE L1 -2000 5808 5660 235 231 31 31 chr3 12907884 12907949 -205129209 - HAL1b LINE L1 -444 904 840 354 241 27 9 chr3 12908076 12908188 -205128970 - HAL1b LINE L1 -552 796 683 320 277 54 0 chr3 12908218 12908330 -205128828 - HAL1b LINE L1 -787 561 444 1893 181 0 3 chr3 12908337 12908630 -205128528 - AluJb SINE Alu -20 292 1 1400 137 4 26 chr3 12908630 12908863 -205128295 - MER2 DNA MER2_type -107 238 11 531 273 148 14 chr3 12909528 12909737 -205127421 + MIR SINE MIR 14 250 -12 1861 132 15 4 chr3 12909762 12910034 -205127124 - AluSg SINE Alu -13 297 23 2205 110 0 13 chr3 12910178 12910478 -205126680 + AluSx SINE Alu 1 296 -16 827 137 0 8 chr3 12910860 12910984 -205126174 + AluJo SINE Alu 12 134 -178 185 268 36 0 chr3 12911035 12911091 -205126067 + MIR SINE MIR 7 64 -198 1765 170 3 10 chr3 12911095 12911384 -205125774 + AluJo SINE Alu 1 287 -25 400 257 96 0 chr3 12911403 12911539 -205125619 + MIR SINE MIR 110 258 -4 939 181 0 0 chr3 12911612 12911761 -205125397 - AluJb SINE Alu -26 286 138 993 217 58 4 chr3 12911804 12912062 -205125096 - L1ME3 LINE L1 -1 6161 5890 1065 79 0 0 chr3 12912207 12912334 -205124824 + 7SLRNA srpRNA srpRNA 75 201 -119 2212 104 13 7 chr3 12912741 12913039 -205124119 - AluSx SINE Alu -10 302 3 183 239 0 70 chr3 12913425 12913496 -205123662 + MIR SINE MIR 163 228 -34 1861 175 68 0 chr3 12913514 12913840 -205123318 - MER7A DNA MER2_type 0 346 1 211 222 143 0 chr3 12913936 12913999 -205123159 - L2 LINE L2 -1 3312 3241 575 286 38 5 chr3 12914685 12914870 -205122288 + MIR SINE MIR 54 244 -18 180 0 0 0 chr3 12915088 12915108 -205122050 + (TG)n Simple_repeat Simple_repeat 2 21 0 1867 135 18 7 chr3 12915255 12915559 -205121599 - AluSx SINE Alu 0 307 1 22 0 0 0 chr3 12917018 12917040 -205120118 + AT_rich Low_complexity Low_complexity 1 22 0 1780 157 11 0 chr3 12917588 12917874 -205119284 - AluJb SINE Alu -23 289 1 230 326 73 59 chr3 12917977 12918265 -205118893 - L2 LINE L2 -38 3234 2943 28 61 0 0 chr3 12918636 12918685 -205118473 + AT_rich Low_complexity Low_complexity 1 49 0 1655 183 7 10 chr3 12918817 12919112 -205118046 - AluJo SINE Alu -16 296 3 486 240 185 7 chr3 12919243 12919389 -205117769 - MER5A DNA MER1_type 0 189 18 21 0 0 0 chr3 12919535 12919556 -205117602 + AT_rich Low_complexity Low_complexity 1 21 0 2622 57 0 13 chr3 12919642 12919957 -205117201 - AluY SINE Alu 0 311 1 1537 189 23 27 chr3 12920600 12920901 -205116257 - AluJo SINE Alu -12 300 1 2155 117 7 10 chr3 12921499 12921799 -205115359 - AluSx SINE Alu -13 299 1 2091 113 21 0 chr3 12922738 12923020 -205114138 + AluSq SINE Alu 1 288 -25 392 184 61 41 chr3 12925597 12925695 -205111463 - Charlie1 DNA MER1_type -255 2506 2407 834 172 77 107 chr3 12925703 12925808 -205111350 - Charlie1 DNA MER1_type -613 2148 2041 1658 126 22 0 chr3 12925808 12926039 -205111119 + AluSx SINE Alu 1 236 -76 834 172 77 107 chr3 12926039 12926194 -205110964 - Charlie1 DNA MER1_type -720 2041 1896 1289 241 100 47 chr3 12926196 12926668 -205110490 - Charlie1 DNA MER1_type -977 1784 1228 1043 198 171 0 chr3 12926668 12926926 -205110232 - MER2 DNA MER2_type 0 345 44 2212 187 202 59 chr3 12926981 12927389 -205109769 - Charlie1 DNA MER1_type -1524 1237 889 1216 208 36 46 chr3 12927389 12927692 -205109466 + AluJo SINE Alu 1 300 -12 2212 187 202 59 chr3 12927692 12928316 -205108842 - Charlie1 DNA MER1_type -1872 889 57 227 226 32 16 chr3 12928659 12928721 -205108437 + MIR SINE MIR 83 145 -117 3477 118 135 38 chr3 12928750 12929131 -205108027 - Tigger1 DNA MER2_type 0 2418 2075 1964 133 43 7 chr3 12929131 12929432 -205107726 - AluSx SINE Alu 0 312 1 3477 118 135 38 chr3 12929432 12929708 -205107450 - Tigger1 DNA MER2_type -343 2075 1697 191 167 0 48 chr3 12930963 12931005 -205106153 - MIR SINE MIR -6 256 217 1624 160 34 27 chr3 12931476 12931770 -205105388 + AluJb SINE Alu 1 296 -16 307 164 0 15 chr3 12932335 12932402 -205104756 - Charlie5 DNA MER1_type -2505 107 42 1048 90 131 95 chr3 12932934 12933156 -205104002 + MER30 DNA MER1_type 1 230 0 22 56 0 0 chr3 12938288 12938324 -205098834 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr3 12939426 12939455 -205097703 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 12940958 12940979 -205096179 + AT_rich Low_complexity Low_complexity 1 21 0 1354 66 6 6 chr3 12944149 12944330 -205092828 + AluYa5 SINE Alu 118 298 -13 2176 129 0 0 chr3 12944751 12945054 -205092104 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr3 12945398 12945419 -205091739 + AT_rich Low_complexity Low_complexity 1 21 0 2230 109 3 0 chr3 12945424 12945718 -205091440 + AluSp SINE Alu 1 295 -18 655 189 24 0 chr3 12945735 12945862 -205091296 - MER94 DNA DNA -4 130 1 30 0 0 0 chr3 12946062 12946092 -205091066 + AT_rich Low_complexity Low_complexity 1 30 0 285 185 266 81 chr3 12946160 12946468 -205090690 - L1MC5 LINE L1 -399 7562 7198 1292 157 114 12 chr3 12946479 12946822 -205090336 - Charlie1 DNA MER1_type -41 2720 2343 1528 240 53 32 chr3 12946937 12947462 -205089696 - L1MC5 LINE L1 -813 7148 6613 1564 133 92 19 chr3 12947729 12948084 -205089074 - Tigger3(Golem) DNA MER2_type -2 3027 3 1842 124 4 4 chr3 12948583 12948850 -205088308 - AluSx SINE Alu -1 311 45 21 36 0 0 chr3 12949060 12949088 -205088070 + AT_rich Low_complexity Low_complexity 1 28 0 365 274 26 26 chr3 12949304 12949421 -205087737 + MIR SINE MIR 146 262 0 21 57 0 0 chr3 12949630 12949665 -205087493 + AT_rich Low_complexity Low_complexity 1 35 0 1677 183 3 37 chr3 12950093 12950416 -205086742 - AluJo SINE Alu 0 312 1 490 213 127 27 chr3 12950422 12950611 -205086547 + L1MC5 LINE L1 7687 7902 -59 707 189 8 0 chr3 12950611 12950733 -205086425 - FLAM_C SINE Alu -10 123 1 490 213 127 27 chr3 12950733 12950764 -205086394 + L1MC5 LINE L1 7902 7929 -32 324 0 0 0 chr3 12951355 12951391 -205085767 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 12951391 12951412 -205085746 + AT_rich Low_complexity Low_complexity 1 21 0 2111 104 4 0 chr3 12951466 12951780 -205085378 - AluSg SINE Alu 0 315 1 22 0 0 0 chr3 12952520 12952542 -205084616 + AT_rich Low_complexity Low_complexity 1 22 0 1264 166 107 45 chr3 12953278 12953568 -205083590 - AluJo SINE Alu -4 308 1 1034 147 16 27 chr3 12953583 12953767 -205083391 - AluJb SINE Alu -15 297 116 342 206 162 29 chr3 12954499 12954635 -205082523 + L1MC5 LINE L1 7760 7913 -48 21 36 0 0 chr3 12954644 12954672 -205082486 + AT_rich Low_complexity Low_complexity 1 28 0 2401 76 0 0 chr3 12955189 12955490 -205081668 - AluY SINE Alu -10 301 1 30 27 0 0 chr3 12955495 12955532 -205081626 + AT_rich Low_complexity Low_complexity 1 37 0 2216 53 0 28 chr3 12955643 12955925 -205081233 - AluY SINE Alu -9 302 29 1991 99 0 0 chr3 12956269 12956522 -205080636 + AluSq SINE Alu 44 296 -17 2018 102 0 0 chr3 12956578 12956832 -205080326 - AluSq SINE Alu -59 254 1 957 178 38 0 chr3 12957125 12957282 -205079876 + AluJb SINE Alu 137 299 -13 287 302 94 0 chr3 12958759 12958855 -205078303 - MIR SINE MIR -102 160 56 280 301 115 18 chr3 12958890 12959003 -205078155 - MIR SINE MIR -66 142 19 942 106 8 8 chr3 12959011 12959143 -205078015 - FLAM_C SINE Alu -1 132 1 23 33 0 0 chr3 12959742 12959772 -205077386 + AT_rich Low_complexity Low_complexity 1 30 0 271 239 0 37 chr3 12961215 12961324 -205075834 + CT-rich Low_complexity Low_complexity 4 108 0 476 269 94 29 chr3 12962323 12962494 -205074664 - L2 LINE L2 -4 3309 3128 2328 115 0 6 chr3 12962757 12963069 -205074089 - AluSq SINE Alu -3 310 1 1357 148 15 0 chr3 12963281 12963484 -205073674 - AluSq SINE Alu -10 303 98 1925 149 3 34 chr3 12963929 12964104 -205073054 - AluJb SINE Alu 0 312 150 2312 92 14 0 chr3 12964104 12964397 -205072761 - AluSx SINE Alu -14 298 2 1925 149 3 34 chr3 12964397 12964543 -205072615 - AluJb SINE Alu -162 150 1 1501 199 7 14 chr3 12964614 12964891 -205072267 - AluJb SINE Alu -37 275 1 2099 130 10 7 chr3 12964972 12965271 -205071887 + AluSq SINE Alu 1 300 -13 632 137 0 0 chr3 12965768 12965863 -205071295 - L1MC1 LINE L1 -17 6316 6222 189 132 0 0 chr3 12968125 12968163 -205068995 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 21 36 0 0 chr3 12969147 12969175 -205067983 + AT_rich Low_complexity Low_complexity 1 28 0 525 283 107 30 chr3 12970627 12970860 -205066298 + MIR SINE MIR 12 262 0 2393 85 7 0 chr3 12972668 12972974 -205064184 + AluSp SINE Alu 1 308 -5 252 0 0 0 chr3 12975223 12975251 -205061907 + (TG)n Simple_repeat Simple_repeat 2 29 0 2354 98 0 0 chr3 12975421 12975718 -205061440 + AluSx SINE Alu 1 297 -15 1219 185 19 9 chr3 12976416 12976632 -205060526 - MER20 DNA MER1_type 0 219 2 376 319 71 24 chr3 12977867 12978036 -205059122 - MIR3 SINE MIR -11 197 21 1419 178 29 25 chr3 12978634 12978909 -205058249 + AluJo SINE Alu 7 282 -30 26 0 0 0 chr3 12979051 12979077 -205058081 + AT_rich Low_complexity Low_complexity 1 26 0 2131 106 0 14 chr3 12980456 12980748 -205056410 + AluSg SINE Alu 1 288 -22 2131 114 7 7 chr3 12981482 12981779 -205055379 + AluSc SINE Alu 1 297 -12 1801 147 52 0 chr3 12982310 12982596 -205054562 + AluJb SINE Alu 2 302 -10 30 27 0 0 chr3 12983571 12983608 -205053550 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 12983666 12983689 -205053469 + (T)n Simple_repeat Simple_repeat 1 23 0 2338 87 3 0 chr3 12983707 12984007 -205053151 + AluY SINE Alu 2 302 -9 180 176 0 0 chr3 12984018 12984052 -205053106 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr3 12984218 12984504 -205052654 + AluY SINE Alu 1 287 -24 21 36 0 0 chr3 12984504 12984532 -205052626 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 12984560 12984607 -205052551 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 12984926 12984963 -205052195 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr3 12985153 12985276 -205051882 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 12985315 12985337 -205051821 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr3 12985345 12985638 -205051520 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr3 12985754 12985878 -205051280 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr3 12985878 12986202 -205050956 - HSMAR1 DNA Mariner -2 1285 958 372 61 16 55 chr3 12986500 12986746 -205050412 + AluY SINE Alu 1 301 0 10994 96 6 12 chr3 12987061 12988656 -205048502 + L1P LINE L1 2119 3703 -2443 12159 97 9 32 chr3 12988760 12990670 -205046488 - L1P3 LINE L1 -4547 1914 51 480 305 106 4 chr3 12990960 12991091 -205046067 - MIR SINE MIR -2 260 144 2240 155 12 54 chr3 12991091 12991321 -205045837 - MLT1B LTR MaLR 0 390 183 2259 113 0 0 chr3 12991321 12991622 -205045536 - AluSx SINE Alu -11 301 1 2240 155 12 54 chr3 12991622 12991798 -205045360 - MLT1B LTR MaLR -207 183 1 480 305 106 4 chr3 12991798 12991902 -205045256 - MIR SINE MIR -118 144 1 713 177 0 54 chr3 12992081 12992211 -205044947 + AluJo SINE Alu 38 160 -152 513 235 84 47 chr3 12992478 12992691 -205044467 + MIR SINE MIR 34 254 -8 507 184 11 132 chr3 12992918 12993092 -205044066 + MER5A DNA MER1_type 3 155 -34 231 88 0 0 chr3 12993229 12993263 -205043895 + (TG)n Simple_repeat Simple_repeat 2 35 0 1423 174 38 50 chr3 12993820 12994159 -205042999 + LTR37A LTR ERV1 92 426 0 2823 129 60 19 chr3 12994178 12994592 -205042566 + Charlie1 DNA MER1_type 1835 2273 -488 1992 120 3 19 chr3 12994592 12994900 -205042258 + AluSx SINE Alu 1 303 -9 2823 129 60 19 chr3 12994900 12994967 -205042191 + Charlie1 DNA MER1_type 2273 2336 -425 344 147 15 15 chr3 12995074 12995142 -205042016 - L1MB2 LINE L1 -98 6073 6006 2246 81 0 3 chr3 12995144 12995428 -205041730 + AluY SINE Alu 1 283 -28 441 0 0 0 chr3 12995428 12995477 -205041681 + (CA)n Simple_repeat Simple_repeat 2 50 0 617 231 20 7 chr3 12995477 12995624 -205041534 + MER39 LTR ERV1 540 688 -19 2122 136 0 0 chr3 12995693 12995987 -205041171 + AluSx SINE Alu 1 294 -18 459 365 23 23 chr3 12997040 12997300 -205039858 - MIR SINE MIR -2 260 1 1026 154 0 6 chr3 12998337 12998499 -205038659 + MLT1A2 LTR MaLR 1 161 -213 663 225 8 0 chr3 12998511 12998640 -205038518 + FLAM_C SINE Alu 3 132 -11 1264 185 5 14 chr3 12998655 12998877 -205038281 - AluJo SINE Alu -92 220 1 204 268 36 0 chr3 12998881 12998937 -205038221 - MIR SINE MIR -198 64 7 821 137 0 8 chr3 12998988 12999112 -205038046 - AluJo SINE Alu -178 134 12 2293 94 0 7 chr3 12999494 12999792 -205037366 - AluSx SINE Alu -16 296 1 563 358 46 43 chr3 13000678 13001002 -205036156 + L2 LINE L2 2933 3257 -15 2035 154 0 0 chr3 13001008 13001314 -205035844 + AluSx SINE Alu 1 306 -6 2250 121 0 0 chr3 13001319 13001649 -205035509 + AluSx SINE Alu 1 330 0 339 181 4 2 chr3 13001905 13002154 -205035004 + AluJo SINE Alu 1 298 -4 434 265 77 8 chr3 13003053 13003170 -205033988 - L2 LINE L2 -1 3312 3188 6268 100 20 0 chr3 13003216 13004261 -205032897 - L1PA7 LINE L1 0 6154 5143 718 239 56 0 chr3 13004894 13005074 -205032084 - MIR SINE MIR -59 203 14 2142 110 17 3 chr3 13005294 13005585 -205031573 + AluSg SINE Alu 1 295 -15 664 171 267 0 chr3 13006585 13006731 -205030427 - MER5A DNA MER1_type -4 185 1 321 148 0 0 chr3 13007179 13007233 -205029925 + Alu SINE Alu 249 302 0 445 261 43 9 chr3 13007446 13007561 -205029597 - MIR SINE MIR -62 200 82 999 266 84 68 chr3 13008378 13008617 -205028541 + MLT1K LTR MaLR 189 438 -150 2982 116 19 7 chr3 13008617 13009038 -205028120 + MSTA LTR MaLR 3 428 0 999 266 84 68 chr3 13009038 13009192 -205027966 + MLT1K LTR MaLR 438 588 0 1276 216 150 41 chr3 13009292 13009749 -205027409 + MLT1G3 LTR MaLR 21 593 0 427 201 223 14 chr3 13009762 13009901 -205027257 + MER117 DNA MER1_type 4 171 -26 2385 117 44 0 chr3 13009967 13010333 -205026825 + L1PA13 LINE L1 5799 6179 0 548 217 255 27 chr3 13010385 13010569 -205026589 + MIR SINE MIR 23 248 -14 2248 117 9 20 chr3 13010764 13011105 -205026053 + MER1B DNA MER1_type 1 337 -2 1926 214 87 37 chr3 13011140 13011678 -205025480 + L1ME1 LINE L1 5600 6164 -2 492 205 73 40 chr3 13011686 13011837 -205025321 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 13012133 13012159 -205024999 + (CA)n Simple_repeat Simple_repeat 2 27 0 3193 105 16 2 chr3 13012200 13012628 -205024530 - MER57B LTR ERV1 0 434 1 12919 104 91 59 chr3 13012628 13013005 -205024153 - MER57B-int LTR ERV1 0 7537 7173 2421 68 0 3 chr3 13013005 13013300 -205023858 + AluY SINE Alu 1 294 -17 12919 104 91 59 chr3 13013300 13015084 -205022074 - MER57B-int LTR ERV1 -364 7173 5307 6014 131 57 29 chr3 13015075 13016737 -205020421 - MER57B-int LTR ERV1 -1702 4273 2186 * 331 78 59 0 chr3 13016733 13016784 -205020374 - MER57B-int LTR ERV1 -3726 2220 2167 * 4767 150 55 21 chr3 13016760 13018275 -205018883 - MER57B-int LTR ERV1 -4159 2371 288 4346 140 29 6 chr3 13018272 13018929 -205018229 - MER57B-int LTR ERV1 -6865 672 1 * 3043 120 21 2 chr3 13018929 13019355 -205017803 - MER57B LTR ERV1 0 434 1 389 266 0 39 chr3 13019370 13019498 -205017660 + L1ME4a LINE L1 5987 6109 -12 477 237 50 36 chr3 13019551 13019690 -205017468 - MIR SINE MIR -5 257 117 578 235 150 43 chr3 13019895 13020335 -205016823 + MLT1H LTR MaLR 3 555 0 181 0 0 0 chr3 13020448 13020468 -205016690 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2085 131 3 0 chr3 13020468 13020751 -205016407 - AluSx SINE Alu -1 303 1 22 0 0 0 chr3 13021438 13021460 -205015698 + AT_rich Low_complexity Low_complexity 1 22 0 228 184 0 0 chr3 13021990 13022039 -205015119 + CT-rich Low_complexity Low_complexity 2 50 0 190 301 118 11 chr3 13022164 13022257 -205014901 - L2 LINE L2 -8 3264 3162 32 0 0 0 chr3 13022370 13022402 -205014756 + AT_rich Low_complexity Low_complexity 1 32 0 230 140 53 0 chr3 13022489 13022546 -205014612 + L1MD3 LINE L1 7936 7995 0 342 250 93 9 chr3 13023125 13023233 -205013925 + MIR SINE MIR 64 180 -82 291 194 16 0 chr3 13023303 13023365 -205013793 - Charlie8 DNA MER1_type -1008 1409 1347 533 214 219 16 chr3 13023366 13023553 -205013605 - MLT1A2 LTR MaLR 0 549 325 397 220 83 133 chr3 13023554 13023795 -205013363 - Charlie8 DNA MER1_type -2186 231 3 724 173 0 8 chr3 13023912 13024039 -205013119 + MER5A DNA MER1_type 1 126 -63 664 240 0 0 chr3 13024056 13024185 -205012973 - MER5B DNA MER1_type 0 178 50 260 87 65 0 chr3 13024526 13024572 -205012586 + CT-rich Low_complexity Low_complexity 3 51 0 1542 201 7 0 chr3 13024572 13024846 -205012312 - AluJo SINE Alu -36 276 1 211 327 78 65 chr3 13024930 13025083 -205012075 - L2 LINE L2 -292 2980 2826 392 157 135 22 chr3 13025129 13025218 -205011940 - MLT2D LTR ERVL -1 396 298 801 144 0 8 chr3 13025232 13025350 -205011808 - FLAM_C SINE Alu -13 130 14 1297 174 64 77 chr3 13025355 13025682 -205011476 - MLT2D LTR ERVL -91 323 1 1596 216 92 22 chr3 13025723 13026093 -205011065 + MSTD LTR MaLR 1 396 0 286 315 164 25 chr3 13026456 13026859 -205010299 - L2 LINE L2 -665 2649 2191 300 281 48 68 chr3 13027413 13027559 -205009599 + MIR SINE MIR 25 167 -95 216 325 68 34 chr3 13027582 13027699 -205009459 - L2 LINE L2 -5 3308 3188 772 240 168 41 chr3 13027798 13028090 -205009068 - MER102a DNA MER1_type 0 330 2 1219 217 53 53 chr3 13029220 13029579 -205007579 - MLT1A2 LTR MaLR -15 359 1 180 0 0 0 chr3 13029987 13030007 -205007151 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 934 102 0 0 chr3 13030012 13030130 -205007028 - AluSq/x SINE Alu -194 118 1 2229 121 0 0 chr3 13030400 13030707 -205006451 + AluSx SINE Alu 1 307 -5 227 305 62 23 chr3 13030778 13030906 -205006252 + L2 LINE L2 1889 2021 -1293 1456 160 95 0 chr3 13032013 13032276 -205004882 - AluJb SINE Alu -24 288 1 25 0 0 0 chr3 13032284 13032309 -205004849 + AT_rich Low_complexity Low_complexity 1 25 0 2154 116 0 13 chr3 13032372 13032503 -205004655 + AluSx SINE Alu 5 136 -176 2308 93 16 7 chr3 13032503 13032813 -205004345 + AluSq SINE Alu 1 313 0 2154 116 0 13 chr3 13032813 13032992 -205004166 + AluSx SINE Alu 136 311 -1 2413 75 0 7 chr3 13033084 13033376 -205003782 + AluSc SINE Alu 1 290 -19 242 250 69 0 chr3 13033388 13033460 -205003698 - L1ME LINE L1 -513 5608 5532 1422 176 55 24 chr3 13033538 13033828 -205003330 + AluJo SINE Alu 1 299 -13 2244 114 0 9 chr3 13033830 13034145 -205003013 + AluSx SINE Alu 1 312 0 1053 163 11 0 chr3 13034569 13034753 -205002405 - AluJo SINE Alu -6 306 121 1936 98 0 4 chr3 13035077 13035331 -205001827 - AluSq SINE Alu -7 306 54 718 89 0 0 chr3 13035331 13035421 -205001737 - AluS SINE Alu -221 91 2 889 196 31 0 chr3 13035491 13035654 -205001504 - AluJb SINE Alu -9 303 136 26 30 0 0 chr3 13035676 13035709 -205001449 + AT_rich Low_complexity Low_complexity 1 33 0 260 237 0 26 chr3 13036620 13036696 -205000462 + GA-rich Low_complexity Low_complexity 3 76 0 23 68 0 0 chr3 13038025 13038069 -204999089 + AT_rich Low_complexity Low_complexity 1 44 0 298 190 0 52 chr3 13038459 13038517 -204998641 - MIR SINE MIR -11 251 197 478 248 39 31 chr3 13038521 13038650 -204998508 - L2 LINE L2 -1 3312 3183 245 245 21 21 chr3 13038671 13038765 -204998393 + GA-rich Low_complexity Low_complexity 3 96 0 584 270 155 9 chr3 13039192 13039530 -204997628 - MLT1H LTR MaLR -15 534 122 238 304 43 0 chr3 13039636 13039728 -204997430 - MIR SINE MIR -66 196 101 1437 142 52 4 chr3 13039905 13040124 -204997034 + MER7A DNA MER2_type 1 228 -118 661 243 83 69 chr3 13040124 13040412 -204996746 + MER101B LTR ERV1 1 292 -278 258 206 40 103 chr3 13040459 13040585 -204996573 + MER101 LTR ERV1 328 445 -29 2309 110 0 0 chr3 13040600 13040901 -204996257 - AluSx SINE Alu -11 301 1 411 213 12 0 chr3 13040932 13041012 -204996146 + MER7A DNA MER2_type 257 337 0 507 264 153 32 chr3 13041012 13041228 -204995930 + MIR SINE MIR 15 256 -6 387 222 37 74 chr3 13042499 13042661 -204994497 + HAL1 LINE L1 2263 2418 -89 2473 62 0 10 chr3 13042722 13043030 -204994128 + AluY SINE Alu 1 305 -6 251 54 27 0 chr3 13043635 13043672 -204993486 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 1072 181 51 0 chr3 13044335 13044512 -204992646 + MER5A DNA MER1_type 1 186 -3 1051 253 78 38 chr3 13044523 13045021 -204992137 - MER113 DNA MER1_type? 0 521 4 357 24 0 0 chr3 13045037 13045079 -204992079 + (TG)n Simple_repeat Simple_repeat 1 42 0 256 282 113 0 chr3 13045692 13045816 -204991342 - MIR SINE MIR -15 247 110 702 270 32 10 chr3 13045818 13046097 -204991061 - LTR16B LTR ERVL -2 462 88 191 0 0 94 chr3 13046146 13046178 -204990980 + (T)n Simple_repeat Simple_repeat 1 29 0 7535 58 0 5 chr3 13046192 13047535 -204989623 - L1PA6 LINE L1 0 6154 4820 2097 134 0 3 chr3 13047761 13048059 -204989099 - AluJb SINE Alu -15 297 1 282 267 59 0 chr3 13048540 13048641 -204988517 - HAL1b LINE L1 -798 550 444 1896 178 0 3 chr3 13048648 13048941 -204988217 - AluJb SINE Alu -20 292 1 1407 137 4 26 chr3 13048941 13049174 -204987984 - MER2 DNA MER2_type -107 238 11 596 273 148 14 chr3 13049839 13050048 -204987110 + MIR SINE MIR 14 250 -12 2261 76 3 23 chr3 13050073 13050376 -204986782 - AluY SINE Alu -14 297 1 2258 117 0 3 chr3 13051019 13051319 -204985839 - AluSx SINE Alu -12 300 2 316 286 38 23 chr3 13051944 13052111 -204985047 - HAL1b LINE L1 -2 6119 1222 2205 115 0 0 chr3 13052142 13052430 -204984728 - AluSx SINE Alu -24 288 1 22 0 0 0 chr3 13053889 13053911 -204983247 + AT_rich Low_complexity Low_complexity 1 22 0 1570 216 92 24 chr3 13054578 13054949 -204982209 - MSTD LTR MaLR 0 396 1 1297 174 64 77 chr3 13054990 13055317 -204981841 + MLT2D LTR ERVL 1 323 -91 897 123 0 0 chr3 13055322 13055444 -204981714 + AluJb SINE Alu 14 135 -177 2185 109 7 0 chr3 13055444 13055738 -204981420 + AluSx SINE Alu 1 296 -16 1975 146 7 7 chr3 13055763 13056064 -204981094 + AluJo SINE Alu 1 301 -11 2153 134 3 7 chr3 13056202 13056508 -204980650 + AluSx SINE Alu 1 305 -7 2095 107 7 0 chr3 13056529 13056809 -204980349 + AluSx SINE Alu 11 292 -20 772 240 168 41 chr3 13057775 13058067 -204979091 + MER102a DNA MER1_type 2 330 0 216 325 68 34 chr3 13058166 13058283 -204978875 + L2 LINE L2 3188 3308 -5 300 281 48 68 chr3 13058306 13058452 -204978706 - MIR SINE MIR -95 167 25 286 315 164 25 chr3 13059006 13059409 -204977749 + L2 LINE L2 2191 2649 -665 1596 216 92 22 chr3 13059772 13060142 -204977016 - MSTD LTR MaLR 0 396 1 1297 174 64 77 chr3 13060183 13060510 -204976648 + MLT2D LTR ERVL 1 323 -91 801 144 0 8 chr3 13060515 13060633 -204976525 + FLAM_C SINE Alu 14 130 -13 392 157 135 22 chr3 13060647 13060736 -204976422 + MLT2D LTR ERVL 298 396 -1 211 327 78 65 chr3 13060782 13060935 -204976223 + L2 LINE L2 2826 2980 -292 1542 201 7 0 chr3 13061019 13061293 -204975865 + AluJo SINE Alu 1 276 -36 260 87 65 0 chr3 13061293 13061339 -204975819 + GA-rich Low_complexity Low_complexity 3 51 0 664 240 0 0 chr3 13061680 13061809 -204975349 + MER5B DNA MER1_type 50 178 0 724 173 0 8 chr3 13061826 13061953 -204975205 - MER5A DNA MER1_type -63 126 1 397 220 83 133 chr3 13062070 13062311 -204974847 + MER102a DNA MER1_type 3 231 -99 533 214 219 16 chr3 13062312 13062499 -204974659 + MLT1H LTR MaLR 325 549 0 291 194 16 0 chr3 13062500 13062562 -204974596 + MER102a DNA MER1_type 249 311 -19 342 250 93 9 chr3 13062632 13062740 -204974418 - MIR SINE MIR -82 180 64 230 140 53 0 chr3 13063319 13063376 -204973782 - L1MD3 LINE L1 0 7995 7936 32 0 0 0 chr3 13063463 13063495 -204973663 + AT_rich Low_complexity Low_complexity 1 32 0 190 301 118 11 chr3 13063608 13063701 -204973457 + L2 LINE L2 3162 3264 -8 228 184 0 0 chr3 13063826 13063875 -204973283 + GA-rich Low_complexity Low_complexity 2 50 0 22 0 0 0 chr3 13064405 13064427 -204972731 + AT_rich Low_complexity Low_complexity 1 22 0 2104 131 3 0 chr3 13065114 13065397 -204971761 + AluSx SINE Alu 1 284 -28 181 0 0 0 chr3 13065397 13065417 -204971741 + (TAA)n Simple_repeat Simple_repeat 2 180 0 578 244 128 47 chr3 13065530 13065970 -204971188 - MLT1H LTR MaLR 0 549 3 438 237 50 36 chr3 13066175 13066314 -204970844 + MIR SINE MIR 117 257 -5 379 266 0 39 chr3 13066367 13066495 -204970663 - L1ME4a LINE L1 -12 6109 5987 2891 124 19 0 chr3 13066510 13066936 -204970222 + MER57B LTR ERV1 1 434 0 4345 140 29 6 chr3 13066936 13067593 -204969565 + MER57B-int LTR ERV1 1 672 -6865 * 4769 146 59 21 chr3 13067590 13069132 -204968026 + PABL_A-int LTR ERV1 288 2220 -3726 * 5986 132 57 21 chr3 13069128 13070788 -204966370 + PABL_A-int LTR ERV1 2186 4041 -1702 * 12739 109 32 3 chr3 13070779 13072563 -204964595 + PABL_A-int LTR ERV1 5307 7143 -394 2279 86 3 0 chr3 13072563 13072855 -204964303 - AluSg SINE Alu -17 293 1 22 0 0 0 chr3 13073595 13073617 -204963541 + AT_rich Low_complexity Low_complexity 1 22 0 1259 166 107 45 chr3 13074353 13074643 -204962515 - AluJo SINE Alu -4 308 1 1036 147 16 27 chr3 13074658 13074842 -204962316 - AluJb SINE Alu -15 297 116 240 170 21 0 chr3 13075394 13075441 -204961717 - L1M2 LINE L1 -5088 1761 1714 398 176 162 29 chr3 13075574 13075710 -204961448 + L1MC5 LINE L1 7760 7913 -48 21 36 0 0 chr3 13075719 13075747 -204961411 + AT_rich Low_complexity Low_complexity 1 28 0 1681 86 0 26 chr3 13076264 13076496 -204960662 - AluSc SINE Alu -16 293 68 492 283 80 32 chr3 13076818 13077069 -204960089 - L2 LINE L2 -619 2695 2433 2497 62 0 10 chr3 13077474 13077782 -204959376 - AluY SINE Alu -6 305 1 422 237 34 62 chr3 13077842 13078019 -204959139 - HAL1 LINE L1 -89 2418 2247 1155 169 59 75 chr3 13079030 13079102 -204958056 - L1M4 LINE L1 -538 5636 5564 1997 161 14 30 chr3 13079102 13079463 -204957695 - THE1A LTR MaLR 0 355 1 1155 169 59 75 chr3 13079463 13079698 -204957460 - L1M4 LINE L1 -610 5564 5327 1796 183 3 7 chr3 13079698 13079998 -204957160 - AluJb SINE Alu -13 299 1 1155 169 59 75 chr3 13079998 13080063 -204957095 - L1M4 LINE L1 -847 5327 5263 3969 173 20 6 chr3 13080104 13080757 -204956401 + MER72 LTR ERV1 1 662 -60 2074 143 20 0 chr3 13080757 13081058 -204956100 - AluSx SINE Alu -5 307 1 2578 68 0 0 chr3 13081071 13081378 -204955780 - AluY SINE Alu -4 307 1 200 162 0 0 chr3 13081979 13082016 -204955142 - L2 LINE L2 -3 3310 3274 25 31 0 0 chr3 13082811 13082843 -204954315 + AT_rich Low_complexity Low_complexity 1 32 0 481 260 10 0 chr3 13083641 13083745 -204953413 + FLAM_C SINE Alu 7 111 -32 605 228 46 85 chr3 13084185 13084251 -204952907 - MLT1J LTR MaLR -5 506 439 1428 165 9 91 chr3 13084251 13084591 -204952567 + AluJo SINE Alu 1 312 0 605 228 46 85 chr3 13084591 13084631 -204952527 - MLT1J LTR MaLR -72 439 399 2402 49 0 7 chr3 13084631 13084949 -204952209 + AluY SINE Alu 1 316 0 605 228 46 85 chr3 13084949 13085121 -204952037 - MLT1J LTR MaLR -112 399 237 2326 97 0 3 chr3 13085835 13086135 -204951023 + AluSx SINE Alu 1 299 -13 869 163 44 12 chr3 13086682 13086842 -204950316 - AluJb SINE Alu -146 166 2 2213 68 64 20 chr3 13086895 13087191 -204949967 - AluY SINE Alu -2 309 1 2182 111 0 55 chr3 13087206 13087531 -204949627 - AluSg SINE Alu -1 309 3 2200 114 7 3 chr3 13087568 13087876 -204949282 - AluY SINE Alu -2 309 1 325 161 32 0 chr3 13088120 13088182 -204948976 + MLT1K LTR MaLR 508 571 -17 2100 119 19 10 chr3 13088274 13088769 -204948389 + AluSq SINE Alu 1 313 0 387 331 22 11 chr3 13088801 13088979 -204948179 + MIR SINE MIR 33 212 -50 848 217 61 35 chr3 13089351 13089434 -204947724 - MIR SINE MIR -21 241 162 1957 162 39 21 chr3 13089434 13089817 -204947341 + MLT1B LTR MaLR 1 390 0 848 217 61 35 chr3 13089817 13089963 -204947195 - MIR SINE MIR -100 162 6 1936 173 0 0 chr3 13090764 13091076 -204946082 + AluJo SINE Alu 1 312 0 400 331 66 36 chr3 13091500 13091805 -204945353 + HUERS-P1 LTR ERV1 5946 6259 -4 375 96 0 0 chr3 13091807 13091859 -204945299 + LTR26 LTR ERV1 1 52 -551 600 144 19 0 chr3 13091983 13092087 -204945071 - L1M4 LINE L1 -1366 4780 4675 968 188 6 0 chr3 13092087 13092257 -204944901 - MLT1F1 LTR MaLR -392 175 5 1495 278 94 10 chr3 13092261 13092870 -204944288 - L1MC4a LINE L1 -1889 5919 5260 1459 144 8 27 chr3 13093503 13093766 -204943392 + AluSx SINE Alu 28 285 -27 210 292 0 0 chr3 13093973 13094021 -204943137 + polypyrimidine Low_complexity Low_complexity 4 51 0 1149 144 5 51 chr3 13094507 13094642 -204942516 + AluJb SINE Alu 1 126 -186 2015 68 114 11 chr3 13094642 13094923 -204942235 + AluY SINE Alu 1 310 -1 1149 144 5 51 chr3 13094923 13094982 -204942176 + AluJb SINE Alu 126 186 -126 201 162 0 0 chr3 13095200 13095237 -204941921 + A-rich Low_complexity Low_complexity 1 37 0 255 31 0 0 chr3 13095380 13095412 -204941746 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 234 150 0 0 chr3 13095723 13095763 -204941395 + (A)n Simple_repeat Simple_repeat 1 40 0 209 203 34 34 chr3 13096604 13096663 -204940495 + G-rich Low_complexity Low_complexity 3 61 0 286 198 40 28 chr3 13096666 13096921 -204940237 + GA-rich Low_complexity Low_complexity 1 258 0 1109 190 19 9 chr3 13098058 13098274 -204938884 + MER20 DNA MER1_type 2 219 0 8142 51 57 1 chr3 13098924 13099946 -204937212 + SVA Other Other 330 1406 0 817 163 80 21 chr3 13099963 13100161 -204936997 - L1ME LINE L1 -723 5443 5236 677 103 62 0 chr3 13100164 13100282 -204936876 - LTR49 LTR ERV1 -3 592 486 616 190 10 0 chr3 13100288 13100388 -204936770 + LTR49-int LTR ERV1 1 101 -6230 2112 134 0 7 chr3 13100389 13100694 -204936464 - AluSx SINE Alu -9 303 1 406 255 6 56 chr3 13101057 13101086 -204936072 + MIR SINE MIR 12 41 -221 1910 163 0 3 chr3 13101086 13101381 -204935777 + AluJo SINE Alu 4 297 -15 406 255 6 56 chr3 13101381 13101512 -204935646 + MIR SINE MIR 41 164 -98 301 218 150 54 chr3 13101676 13101823 -204935335 - MIR3 SINE MIR -12 196 36 230 288 123 0 chr3 13101845 13101918 -204935240 - L2 LINE L2 -3 3310 3229 2337 94 0 3 chr3 13102047 13102344 -204934814 - AluSx SINE Alu -16 296 1 1084 214 23 9 chr3 13102442 13102616 -204934542 - AluJo SINE Alu -5 307 128 258 32 0 0 chr3 13102616 13102647 -204934511 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 1084 214 23 9 chr3 13102647 13102692 -204934466 - AluJo SINE Alu -184 128 85 393 138 17 0 chr3 13102692 13102750 -204934408 - AluSx SINE Alu -52 248 190 679 74 11 11 chr3 13102751 13102846 -204934312 - AluSx SINE Alu -174 138 44 667 167 32 8 chr3 13102849 13102975 -204934183 - AluJo/FLAM SINE Alu -172 130 2 26 64 0 0 chr3 13103684 13103731 -204933427 + AT_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr3 13103759 13103793 -204933365 + AT_rich Low_complexity Low_complexity 1 34 0 1103 222 64 53 chr3 13105101 13105400 -204931758 - L1M4 LINE L1 -1898 4248 3943 2340 89 0 13 chr3 13105400 13105704 -204931454 - AluSc SINE Alu -9 300 1 1103 222 64 53 chr3 13105704 13105764 -204931394 - L1M4 LINE L1 -2203 3943 3885 1100 225 99 48 chr3 13105764 13106232 -204930926 - LTR8A LTR ERV1 0 727 117 1772 150 21 0 chr3 13107229 13107509 -204929649 + AluJo SINE Alu 1 286 -26 2199 107 0 10 chr3 13107535 13107824 -204929334 + AluSx SINE Alu 1 286 -26 239 83 83 48 chr3 13108133 13108217 -204928941 + (TTGTG)n Simple_repeat Simple_repeat 2 88 0 2097 123 0 7 chr3 13108549 13108876 -204928282 - AluJb SINE Alu 0 312 1 626 262 22 22 chr3 13108883 13109066 -204928092 + MIR SINE MIR 29 211 -51 1560 260 135 39 chr3 13109413 13109947 -204927211 + MLT1K LTR MaLR 4 588 0 2346 87 0 13 chr3 13110184 13110484 -204926674 + AluSq SINE Alu 1 296 -17 2369 145 15 3 chr3 13110797 13110929 -204926229 + L1P5 LINE L1 5012 5141 -1013 2038 119 0 14 chr3 13110929 13111239 -204925919 + AluSx SINE Alu 1 306 0 2369 145 15 3 chr3 13111239 13111679 -204925479 + L1P5 LINE L1 5141 5590 -564 1969 131 3 10 chr3 13111696 13111993 -204925165 - AluSx SINE Alu -17 295 1 264 81 0 0 chr3 13111993 13112030 -204925128 + MLT1F1 LTR MaLR 530 566 -1 25 31 0 0 chr3 13112243 13112275 -204924883 + AT_rich Low_complexity Low_complexity 1 32 0 2076 130 3 0 chr3 13112314 13112629 -204924529 + AluSx SINE Alu 1 312 0 584 249 64 118 chr3 13112749 13113062 -204924096 + L2 LINE L2 2966 3261 -11 282 303 13 34 chr3 13113073 13113232 -204923926 + GA-rich Low_complexity Low_complexity 1 155 0 183 194 0 0 chr3 13114234 13114270 -204922888 + MIR SINE MIR 109 144 -118 934 187 0 0 chr3 13114389 13114544 -204922614 + FRAM SINE Alu 1 155 -11 189 0 0 0 chr3 13114572 13114593 -204922565 + (A)n Simple_repeat Simple_repeat 1 21 0 211 275 46 46 chr3 13114956 13115065 -204922093 - MIR3 SINE MIR -10 198 90 442 204 34 109 chr3 13115114 13115261 -204921897 - L2 LINE L2 0 3272 3137 258 32 0 0 chr3 13115647 13115678 -204921480 + (TC)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr3 13115680 13115705 -204921453 + (CA)n Simple_repeat Simple_repeat 1 25 0 652 266 91 36 chr3 13115716 13115990 -204921168 + MLT1K LTR MaLR 138 426 -162 2194 112 3 0 chr3 13115990 13116285 -204920873 + AluSx SINE Alu 1 296 -16 2129 98 4 4 chr3 13116415 13116690 -204920468 + AluSx SINE Alu 14 288 -24 266 119 0 24 chr3 13116708 13116750 -204920408 + Tigger1 DNA MER2_type 1579 1619 -799 828 229 0 0 chr3 13117047 13117191 -204919967 + FRAM SINE Alu 9 152 -24 4738 137 37 18 chr3 13117369 13118188 -204918970 - L1MB4 LINE L1 -10 6170 5337 2133 103 31 0 chr3 13118190 13118480 -204918678 + AluSx SINE Alu 1 299 -13 1746 218 8 8 chr3 13118504 13118894 -204918264 - L1MB4 LINE L1 -940 5206 4817 1157 127 12 0 chr3 13118896 13119062 -204918096 - AluSg/x SINE Alu -14 296 129 681 198 41 8 chr3 13119217 13119338 -204917820 - FLAM_C SINE Alu -17 126 2 2568 212 26 46 chr3 13119530 13120180 -204916978 - L1ME1 LINE L1 -5 6161 5525 504 262 116 39 chr3 13121020 13121253 -204915905 + MIR SINE MIR 12 262 0 2320 99 7 0 chr3 13123062 13123366 -204913792 + AluSx SINE Alu 1 306 -6 586 288 101 10 chr3 13123366 13123564 -204913594 + MIR SINE MIR 47 262 0 445 307 163 34 chr3 13123622 13124421 -204912737 - L2 LINE L2 -425 2889 1988 246 227 194 34 chr3 13124766 13124950 -204912208 - L2 LINE L2 -340 2932 2725 1146 121 10 66 chr3 13124954 13125152 -204912006 - AluJo SINE Alu -14 298 112 248 154 11 149 chr3 13125275 13125450 -204911708 - AluJo SINE Alu -147 155 5 459 280 48 11 chr3 13125454 13125643 -204911515 - L2 LINE L2 -593 2721 2526 482 249 23 81 chr3 13125811 13125902 -204911256 + MIR SINE MIR 81 159 -103 2315 95 0 0 chr3 13125902 13126197 -204910961 - AluY SINE Alu -16 295 1 482 249 23 81 chr3 13126197 13126278 -204910880 + MIR SINE MIR 159 243 -19 2087 119 0 7 chr3 13126285 13126613 -204910545 - AluSx SINE Alu 0 326 1 1960 154 77 100 chr3 13126615 13127083 -204910075 + LTR49-int LTR ERV1 734 1190 -5141 339 257 0 14 chr3 13127110 13127180 -204909978 + tRNA-Glu-GAG tRNA tRNA 7 75 0 550 115 67 5 chr3 13127234 13127338 -204909820 + LTR49-int LTR ERV1 1290 1934 -2946 2231 98 11 0 chr3 13127433 13127720 -204909438 + AluY SINE Alu 10 299 -12 3778 158 16 52 chr3 13127754 13128037 -204909121 + LTR49-int LTR ERV1 1372 1663 -4668 2248 90 0 7 chr3 13128037 13128325 -204908833 + AluSg1 SINE Alu 5 290 -19 3778 158 16 52 chr3 13128325 13128776 -204908382 + LTR49-int LTR ERV1 1663 2080 -4251 2860 197 18 42 chr3 13128781 13129399 -204907759 - LTR26 LTR ERV1 0 603 1 1453 178 7 7 chr3 13129606 13129887 -204907271 + AluSg SINE Alu 10 290 -20 1592 335 38 46 chr3 13130228 13130263 -204906895 - MER66-int LTR ERV1 -2813 4309 4275 1805 188 0 0 chr3 13130263 13130556 -204906602 + AluJo SINE Alu 3 295 -17 1592 335 38 46 chr3 13130556 13131638 -204905520 - MER66-int LTR ERV1 -2847 4275 3201 490 352 18 26 chr3 13131705 13131978 -204905180 - MER66-int LTR ERV1 -4020 3102 2832 429 100 0 0 chr3 13132050 13132110 -204905048 + Alu SINE Alu 249 308 -4 760 339 47 50 chr3 13132177 13132818 -204904340 - MER66-int LTR ERV1 -5568 1554 916 357 277 11 0 chr3 13133001 13133095 -204904063 - MER66-int LTR ERV1 -5067 1609 1515 693 237 23 92 chr3 13133434 13133696 -204903462 - MER66-int LTR ERV1 -5462 801 558 2019 61 0 8 chr3 13133875 13134122 -204903036 + AluY SINE Alu 1 245 -66 540 214 71 57 chr3 13134293 13134562 -204902596 - LTR48B LTR ERV1 -21 732 382 271 167 45 15 chr3 13134625 13134691 -204902467 - LTR48B LTR ERV1 -449 195 128 261 274 104 19 chr3 13134663 13134769 -204902389 - MER39 LTR ERV1 -582 125 11 * 1107 170 131 0 chr3 13134802 13135008 -204902150 - MER34C LTR ERV1 -352 233 1 2314 181 14 0 chr3 13135010 13135436 -204901722 + L1MB7 LINE L1 5752 6183 -1 1921 112 7 4 chr3 13135455 13135724 -204901434 + AluSp SINE Alu 11 280 -33 345 132 38 0 chr3 13135748 13135801 -204901357 + LTR49 LTR ERV1 535 589 -6 1377 197 19 104 chr3 13135803 13135856 -204901302 - L1M4 LINE L1 -904 5242 5186 2428 66 7 3 chr3 13135856 13136157 -204901001 - AluY SINE Alu -9 302 1 1377 197 19 104 chr3 13136157 13136254 -204900904 - L1M4 LINE L1 -960 5186 5082 1899 159 10 16 chr3 13136254 13136568 -204900590 - AluJo SINE Alu 0 312 1 1377 197 19 104 chr3 13136568 13136848 -204900310 - L1M4 LINE L1 -1064 5082 4848 794 216 13 0 chr3 13136835 13136988 -204900170 + L1ME LINE L1 5425 5579 -587 * 1864 176 6 6 chr3 13136988 13137300 -204899858 + AluJb SINE Alu 1 312 0 2209 132 57 75 chr3 13137382 13137820 -204899338 + LTR2B LTR ERV1 1 430 -60 30 27 0 0 chr3 13138754 13138791 -204898367 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 13138849 13138872 -204898286 + (T)n Simple_repeat Simple_repeat 1 23 0 2504 46 0 36 chr3 13138890 13139196 -204897962 + AluY SINE Alu 2 296 -15 292 300 85 2 chr3 13139452 13139695 -204897463 + L1MDa LINE L1 2444 2715 -3825 580 223 12 54 chr3 13140111 13140277 -204896881 - L1ME2 LINE L1 -10 6154 5996 564 274 17 58 chr3 13140265 13140435 -204896723 + L1MDa LINE L1 2918 3073 -3467 * 1638 173 0 64 chr3 13140435 13140764 -204896394 - AluJo SINE Alu -4 308 1 564 274 17 58 chr3 13140764 13140885 -204896273 + L1MDa LINE L1 3073 3197 -3343 1091 170 0 11 chr3 13141170 13141352 -204895806 + AluJb SINE Alu 122 301 -11 23 0 0 0 chr3 13141367 13141390 -204895768 + AT_rich Low_complexity Low_complexity 1 23 0 201 266 31 62 chr3 13141447 13141511 -204895647 - MIR SINE MIR -62 146 85 368 256 115 39 chr3 13141552 13141708 -204895450 + L2 LINE L2 3136 3303 -10 328 134 119 15 chr3 13141732 13141799 -204895359 - MLT1B LTR MaLR 0 390 317 1137 125 11 11 chr3 13141806 13141982 -204895176 - AluY SINE Alu 0 311 136 527 91 91 11 chr3 13141982 13142070 -204895088 - MLT1B LTR MaLR -58 332 238 920 141 0 15 chr3 13142333 13142468 -204894690 + FLAM_A SINE Alu 1 133 0 408 71 0 0 chr3 13142616 13142672 -204894486 + (TC)n Simple_repeat Simple_repeat 1 56 0 801 165 0 0 chr3 13142865 13142986 -204894172 + FLAM_C SINE Alu 1 121 -22 2410 60 0 10 chr3 13142996 13143294 -204893864 + AluY SINE Alu 1 295 -16 974 186 11 11 chr3 13143924 13144112 -204893046 + L1PB4 LINE L1 5949 6136 -20 997 116 0 0 chr3 13144119 13144257 -204892901 - AluSg/x SINE Alu -10 300 163 2020 133 3 3 chr3 13144451 13144744 -204892414 - AluSc SINE Alu -12 297 5 21 36 0 0 chr3 13144838 13144866 -204892292 + AT_rich Low_complexity Low_complexity 1 28 0 182 136 23 0 chr3 13146588 13146632 -204890526 + (TG)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr3 13148826 13148855 -204888303 + AT_rich Low_complexity Low_complexity 1 29 0 373 299 85 24 chr3 13149238 13149402 -204887756 - MIR SINE MIR -33 229 56 1494 196 14 4 chr3 13149427 13149703 -204887455 - AluJb SINE Alu -33 279 1 331 235 71 10 chr3 13150276 13150374 -204886784 + MIR3 SINE MIR 105 208 0 225 0 0 0 chr3 13150617 13150642 -204886516 + (T)n Simple_repeat Simple_repeat 1 25 0 2353 92 0 10 chr3 13152294 13152608 -204884550 + AluSq SINE Alu 1 311 -2 300 53 0 0 chr3 13153110 13153148 -204884010 + (T)n Simple_repeat Simple_repeat 1 38 0 1592 73 0 10 chr3 13153159 13153364 -204883794 - AluSq SINE Alu -110 203 1 366 279 137 37 chr3 13154097 13154151 -204883007 + MIR SINE MIR 54 101 -161 2252 95 10 13 chr3 13154151 13154456 -204882702 + AluSx SINE Alu 1 304 -8 366 279 137 37 chr3 13154456 13154591 -204882567 + MIR SINE MIR 101 262 0 2304 106 0 10 chr3 13154651 13154954 -204882204 + AluSc SINE Alu 1 300 -9 180 176 0 0 chr3 13154965 13154999 -204882159 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr3 13155165 13155451 -204881707 + AluY SINE Alu 1 287 -24 21 36 0 0 chr3 13155451 13155479 -204881679 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 13155507 13155554 -204881604 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 13155873 13155910 -204881248 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr3 13156100 13156223 -204880935 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 13156262 13156284 -204880874 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr3 13156292 13156585 -204880573 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr3 13156701 13156825 -204880333 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr3 13156825 13157149 -204880009 - HSMAR1 DNA Mariner -2 1285 958 372 61 16 55 chr3 13157447 13157693 -204879465 + AluY SINE Alu 1 300 0 25 31 0 0 chr3 13158799 13158831 -204878327 + AT_rich Low_complexity Low_complexity 1 32 0 238 267 322 0 chr3 13159573 13159663 -204877495 + L2 LINE L2 3151 3269 -3 2555 68 0 0 chr3 13160264 13160571 -204876587 + AluY SINE Alu 1 307 -4 941 102 71 0 chr3 13160584 13160711 -204876447 + AluSq/x SINE Alu 1 136 -177 328 307 51 22 chr3 13160751 13160888 -204876270 + MIR SINE MIR 109 249 -13 1770 171 9 19 chr3 13160965 13161280 -204875878 - AluSx SINE Alu 0 312 1 1924 139 0 0 chr3 13161812 13162111 -204875047 + AluSx SINE Alu 9 307 0 2642 55 0 0 chr3 13163965 13164273 -204872885 + AluY SINE Alu 1 308 -3 188 33 0 33 chr3 13164377 13164407 -204872751 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1743 179 7 14 chr3 13164701 13164991 -204872167 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr3 13165011 13165183 -204871975 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr3 13166746 13166781 -204870377 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr3 13169064 13169137 -204868021 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr3 13169148 13169326 -204867832 - MIR SINE MIR -15 247 48 299 227 61 0 chr3 13169728 13169794 -204867364 + MER20B DNA MER1_type 96 165 -618 280 393 56 0 chr3 13170193 13170282 -204866876 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr3 13170643 13170718 -204866440 + CT-rich Low_complexity Low_complexity 6 82 0 30 0 0 0 chr3 13174407 13174437 -204862721 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 13175638 13175660 -204861498 + (T)n Simple_repeat Simple_repeat 1 22 0 1845 127 53 0 chr3 13176721 13177004 -204860154 - MER7A DNA MER2_type -48 298 3 304 306 57 49 chr3 13177032 13177101 -204860057 + HAL1b LINE L1 383 450 -898 2179 106 3 0 chr3 13177101 13177394 -204859764 + AluSg SINE Alu 1 294 -16 304 306 57 49 chr3 13177394 13177569 -204859589 + HAL1b LINE L1 450 629 -719 2193 105 3 10 chr3 13177570 13177876 -204859282 + AluSg1 SINE Alu 1 304 -5 188 33 0 33 chr3 13177981 13178011 -204859147 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1743 179 7 14 chr3 13178305 13178595 -204858563 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr3 13178615 13178787 -204858371 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr3 13180351 13180386 -204856772 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr3 13182669 13182742 -204854416 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr3 13182753 13182931 -204854227 - MIR SINE MIR -15 247 48 299 227 61 0 chr3 13183333 13183399 -204853759 + MER20B DNA MER1_type 96 165 -618 280 393 56 0 chr3 13183798 13183887 -204853271 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr3 13184247 13184322 -204852836 + CT-rich Low_complexity Low_complexity 6 82 0 30 0 0 0 chr3 13188012 13188042 -204849116 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 13189244 13189266 -204847892 + (T)n Simple_repeat Simple_repeat 1 22 0 705 291 110 63 chr3 13189954 13190415 -204846743 - L2 LINE L2 -2 3311 2796 1168 153 65 92 chr3 13190415 13190510 -204846648 - MER58A DNA MER1_type -2196 224 128 2184 119 17 0 chr3 13190510 13190812 -204846346 + AluSx SINE Alu 1 307 -5 1168 153 65 92 chr3 13190812 13190945 -204846213 - MER58A DNA MER1_type -2292 128 2 705 291 110 63 chr3 13190945 13191268 -204845890 - L2 LINE L2 -517 2796 2489 2320 92 0 0 chr3 13191393 13191688 -204845470 + AluSg SINE Alu 1 295 -15 269 326 92 0 chr3 13191996 13192094 -204845064 - L2 LINE L2 -9 3263 3157 1044 121 221 11 chr3 13192160 13192350 -204844808 + MER30 DNA MER1_type 1 230 0 1322 146 219 12 chr3 13192866 13193112 -204844046 - AluJo SINE Alu -5 297 1 2293 36 88 0 chr3 13193497 13193771 -204843387 + AluY SINE Alu 1 298 -13 2060 117 3 52 chr3 13194432 13194740 -204842418 + AluSx SINE Alu 1 293 -19 1281 224 116 28 chr3 13194766 13195154 -204842004 + L1MC2 LINE L1 3957 4378 -1768 1046 165 0 0 chr3 13195154 13195312 -204841846 + FRAM SINE Alu 1 157 -19 2221 99 0 0 chr3 13195340 13195675 -204841483 + AluSx SINE Alu 1 335 0 2820 200 101 14 chr3 13195698 13195939 -204841219 + L1MC2 LINE L1 4404 4623 -1721 1918 166 7 0 chr3 13195939 13196235 -204840923 - AluSx SINE Alu -14 298 1 2820 200 101 14 chr3 13196235 13196471 -204840687 + L1MC2 LINE L1 4623 4837 -1507 351 0 0 0 chr3 13196471 13196510 -204840648 + (TG)n Simple_repeat Simple_repeat 2 40 0 2820 200 101 14 chr3 13196510 13197343 -204839815 + L1MC2 LINE L1 4837 5831 -513 1236 240 124 20 chr3 13197345 13197836 -204839322 + L1M1 LINE L1 3100 3641 -3924 718 112 37 67 chr3 13197852 13197986 -204839172 + L1M2 LINE L1 5665 5794 -518 508 91 0 80 chr3 13197986 13198074 -204839084 + L1MA9 LINE L1 5383 5463 -849 2454 154 47 55 chr3 13198164 13198524 -204838634 + L1MA9 LINE L1 5782 6138 -174 1925 149 3 13 chr3 13198524 13198826 -204838332 + AluJb SINE Alu 1 299 -13 2454 154 47 55 chr3 13198826 13198997 -204838161 + L1MA9 LINE L1 6138 6309 -3 3182 111 21 38 chr3 13199005 13199499 -204837659 + L1MC1 LINE L1 5818 6304 -29 2141 102 10 33 chr3 13199499 13199802 -204837356 + AluSx SINE Alu 5 300 -12 3182 111 21 38 chr3 13199802 13199829 -204837329 + L1MC1 LINE L1 6304 6330 -3 587 137 23 122 chr3 13199829 13199910 -204837248 + AluJo/FLAM SINE Alu 1 66 -236 2266 85 0 13 chr3 13199910 13200215 -204836943 - AluY SINE Alu -10 301 1 587 137 23 122 chr3 13200215 13200264 -204836894 + AluJo/FLAM SINE Alu 66 118 -184 24 0 0 0 chr3 13200264 13200288 -204836870 + AT_rich Low_complexity Low_complexity 1 24 0 629 318 92 25 chr3 13200290 13200425 -204836733 + HAL1b LINE L1 64 188 -1160 1634 166 17 10 chr3 13200425 13200720 -204836438 + AluSx SINE Alu 1 297 -15 629 318 92 25 chr3 13200720 13200867 -204836291 + HAL1b LINE L1 188 365 -983 1923 153 48 0 chr3 13200902 13201215 -204835943 - MER7A DNA MER2_type -18 328 3 274 306 57 49 chr3 13201243 13201312 -204835846 + HAL1b LINE L1 383 450 -898 2071 106 3 0 chr3 13201312 13201605 -204835553 + AluSg SINE Alu 1 294 -16 274 306 57 49 chr3 13201605 13201780 -204835378 + HAL1b LINE L1 450 629 -719 2241 92 3 0 chr3 13201781 13202087 -204835071 + AluSg1 SINE Alu 1 307 -2 1776 223 32 73 chr3 13202503 13203159 -204833999 + L1MC5 LINE L1 6732 7360 -601 1023 256 61 59 chr3 13203296 13203819 -204833339 + L1MC5 LINE L1 6962 7485 -476 475 135 292 0 chr3 13203863 13203959 -204833199 + FLAM_A SINE Alu 6 129 -13 1798 153 7 0 chr3 13203962 13204263 -204832895 + AluSx SINE Alu 1 303 -9 260 256 81 23 chr3 13204582 13204668 -204832490 + L2 LINE L2 3223 3313 0 191 336 130 40 chr3 13205014 13205223 -204831935 + L2 LINE L2 332 573 -2741 2086 116 17 0 chr3 13205223 13205525 -204831633 - AluSx SINE Alu -5 307 1 191 336 130 40 chr3 13205525 13205592 -204831566 + L2 LINE L2 573 633 -2681 839 327 151 42 chr3 13205983 13206035 -204831123 + L2 LINE L2 1301 1346 -1926 2173 88 13 28 chr3 13206035 13206352 -204830806 - AluSx SINE Alu 0 312 1 839 327 151 42 chr3 13206352 13207507 -204829651 + L2 LINE L2 1346 2374 -898 2355 147 18 61 chr3 13207507 13207892 -204829266 + MSTB LTR MaLR 1 401 -25 1783 142 17 26 chr3 13207892 13208029 -204829129 + AluJo SINE Alu 1 138 -174 2238 93 0 0 chr3 13208029 13208319 -204828839 + AluSc SINE Alu 1 290 -19 1783 142 17 26 chr3 13208319 13208483 -204828675 + AluJo SINE Alu 138 299 -13 2118 122 0 0 chr3 13208490 13208793 -204828365 + AluSx SINE Alu 1 303 -9 2355 147 18 61 chr3 13208793 13208842 -204828316 + MSTB LTR MaLR 407 424 -2 839 327 151 42 chr3 13208842 13209392 -204827766 + L2 LINE L2 2374 3266 -6 238 325 61 18 chr3 13209428 13209591 -204827567 - MIR SINE MIR -16 246 77 620 195 81 109 chr3 13209661 13209720 -204827438 + MLT1J LTR MaLR 5 64 -447 2203 104 0 0 chr3 13209720 13210019 -204827139 - AluSx SINE Alu -13 299 1 620 195 81 109 chr3 13210019 13210396 -204826762 + MLT1J LTR MaLR 64 500 -11 203 333 0 53 chr3 13211923 13212073 -204825085 + C-rich Low_complexity Low_complexity 3 144 0 225 297 0 25 chr3 13212099 13212217 -204824941 + CT-rich Low_complexity Low_complexity 2 116 0 206 292 0 66 chr3 13212175 13212312 -204824846 + C-rich Low_complexity Low_complexity 2 129 0 * 350 113 0 42 chr3 13213034 13213105 -204824053 + (CA)n Simple_repeat Simple_repeat 2 69 0 237 65 0 0 chr3 13214408 13214439 -204822719 + (GA)n Simple_repeat Simple_repeat 2 32 0 2159 107 0 3 chr3 13214513 13214811 -204822347 + AluSq SINE Alu 1 297 -16 551 265 55 45 chr3 13214830 13215030 -204822128 + MIR SINE MIR 40 241 -21 664 155 43 17 chr3 13215100 13215216 -204821942 - FLAM_A SINE Alu -12 130 12 329 261 109 0 chr3 13215645 13215737 -204821421 + MIR SINE MIR 11 112 -150 1999 116 0 0 chr3 13215838 13216113 -204821045 + AluJo SINE Alu 2 276 -36 1892 137 0 23 chr3 13216182 13216489 -204820669 + AluSx SINE Alu 1 300 -12 2347 71 0 0 chr3 13216637 13216932 -204820226 + AluY SINE Alu 1 295 -16 387 297 139 46 chr3 13216965 13217332 -204819826 - L1ME3 LINE L1 -205 5957 5557 1904 136 3 37 chr3 13217350 13217537 -204819621 - AluJb SINE Alu 0 312 139 1966 64 114 4 chr3 13217537 13217817 -204819341 - AluY SINE Alu 0 311 1 1904 136 3 37 chr3 13217817 13217952 -204819206 - AluJb SINE Alu -173 139 1 210 292 0 0 chr3 13218434 13218482 -204818676 + polypurine Low_complexity Low_complexity 4 51 0 2045 116 3 0 chr3 13218680 13218973 -204818185 - AluSx SINE Alu -18 294 1 513 271 114 33 chr3 13219085 13219295 -204817863 + MIR SINE MIR 17 243 -19 233 336 115 9 chr3 13219278 13219369 -204817789 - L2 LINE L2 -7 3265 3163 735 229 91 13 chr3 13219369 13219614 -204817544 + MIR SINE MIR 1 261 -1 242 305 12 0 chr3 13220501 13220583 -204816575 - L2 LINE L2 -339 2974 2892 329 292 152 6 chr3 13220591 13220769 -204816389 - L2 LINE L2 -1035 2279 2076 297 306 10 0 chr3 13221256 13221354 -204815804 + CT-rich Low_complexity Low_complexity 2 100 0 210 360 0 0 chr3 13221448 13221523 -204815635 + CT-rich Low_complexity Low_complexity 2 76 0 282 278 139 50 chr3 13221525 13221705 -204815453 - L2 LINE L2 -1 3312 3117 180 229 83 21 chr3 13221960 13222008 -204815150 - MIR SINE MIR -95 167 117 605 253 104 20 chr3 13222104 13222265 -204814893 - MER20 DNA MER1_type 0 219 36 1537 174 53 7 chr3 13222265 13222546 -204814612 + AluJb SINE Alu 5 298 -4 605 253 104 20 chr3 13222546 13222586 -204814572 - MER20 DNA MER1_type -183 36 1 2162 95 0 0 chr3 13222749 13223075 -204814083 + AluSx SINE Alu 1 326 0 642 261 19 66 chr3 13223082 13223163 -204813995 - MIR SINE MIR -19 243 160 2202 95 0 0 chr3 13223163 13223458 -204813700 + AluY SINE Alu 1 295 -16 642 261 19 66 chr3 13223458 13223587 -204813571 - MIR SINE MIR -102 160 43 1392 203 44 3 chr3 13223590 13223911 -204813247 + MER113 DNA MER1_type? 79 412 -109 2262 64 7 0 chr3 13224028 13224323 -204812835 - AluY SINE Alu -14 297 1 382 283 9 53 chr3 13224329 13224442 -204812716 + MIR SINE MIR 85 192 -70 1001 251 55 98 chr3 13224613 13225035 -204812123 + MLT1J LTR MaLR 3 406 -105 2271 49 0 7 chr3 13225035 13225353 -204811805 - AluY SINE Alu 0 316 1 1001 251 55 98 chr3 13225353 13225387 -204811771 + MLT1J LTR MaLR 406 440 -71 210 71 0 0 chr3 13225393 13225421 -204811737 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1513 169 18 15 chr3 13225451 13225724 -204811434 - AluJo SINE Alu -38 274 1 294 172 0 17 chr3 13225732 13225790 -204811368 + MLT1J LTR MaLR 450 506 -5 182 200 0 0 chr3 13225849 13225884 -204811274 + MIR SINE MIR 79 113 -95 667 134 84 25 chr3 13226259 13226378 -204810780 + AluJo SINE Alu 9 134 -178 6539 168 30 33 chr3 13226425 13227464 -204809694 - L1MC1 LINE L1 0 6613 5572 1978 137 7 0 chr3 13227464 13227763 -204809395 - AluSx SINE Alu -11 301 1 6539 168 30 33 chr3 13227763 13227812 -204809346 - L1MC1 LINE L1 -1041 5572 5524 1919 133 20 0 chr3 13227812 13228106 -204809052 - AluSx SINE Alu -12 300 1 6539 168 30 33 chr3 13228106 13228564 -204808594 - L1MC1 LINE L1 -1089 5524 5066 2166 106 0 10 chr3 13228564 13228865 -204808293 - AluSx SINE Alu -14 298 1 1957 110 23 7 chr3 13228873 13229172 -204807986 - AluSq SINE Alu -9 304 1 6539 168 30 33 chr3 13229172 13229594 -204807564 - L1MC1 LINE L1 -1554 5059 4638 941 168 84 5 chr3 13229596 13229798 -204807360 + AluJo SINE Alu 85 302 -10 4280 231 32 19 chr3 13229803 13230839 -204806319 - L1MC1 LINE L1 -1793 4633 3612 1901 115 39 39 chr3 13230839 13231013 -204806145 - AluSx SINE Alu 0 312 139 267 31 0 0 chr3 13231013 13231045 -204806113 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1945 112 0 7 chr3 13231045 13231330 -204805828 - AluSq SINE Alu -30 283 1 1901 115 39 39 chr3 13231330 13231466 -204805692 - AluSx SINE Alu -171 141 1 4280 231 32 19 chr3 13231466 13231649 -204805509 - L1MC1 LINE L1 -2814 3612 3398 1254 196 32 4 chr3 13231651 13231901 -204805257 - AluJo SINE Alu -12 300 44 876 123 15 8 chr3 13231910 13232040 -204805118 - AluJb SINE Alu -171 141 11 915 202 0 0 chr3 13232047 13232265 -204804893 - L1MC1 LINE L1 -3006 3420 3203 554 225 0 39 chr3 13232269 13232398 -204804760 + FLAM_C SINE Alu 7 130 -13 180 0 0 0 chr3 13232433 13232453 -204804705 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1855 128 29 4 chr3 13232455 13232736 -204804422 - AluSg SINE Alu -22 288 1 1875 249 58 3 chr3 13232741 13233308 -204803850 - L1MC1 LINE L1 -3234 3192 2595 994 162 23 0 chr3 13233310 13233483 -204803675 - AluJo/FRAM SINE Alu -2 310 134 2145 103 3 10 chr3 13233483 13233794 -204803364 - AluY SINE Alu -2 309 1 1617 150 80 12 chr3 13233794 13234236 -204802922 - L1MC1 LINE L1 -3947 2479 2140 356 200 16 49 chr3 13234301 13234486 -204802672 + C-rich Low_complexity Low_complexity 2 180 0 388 257 9 18 chr3 13234486 13234599 -204802559 + CT-rich Low_complexity Low_complexity 1 112 0 457 134 0 0 chr3 13234703 13234770 -204802388 - AluS SINE Alu -212 101 35 9064 135 39 42 chr3 13234772 13235234 -204801924 - L1MC1 LINE L1 -4493 1933 1471 192 97 0 0 chr3 13235234 13235265 -204801893 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9064 135 39 42 chr3 13235265 13236650 -204800508 - L1MC1 LINE L1 -4955 1471 1 247 222 0 0 chr3 13236821 13236866 -204800292 - MIR SINE MIR -31 231 187 2430 140 5 10 chr3 13237042 13237448 -204799710 + L1MB3 LINE L1 5779 6182 -1 1288 205 129 37 chr3 13237590 13237970 -204799188 + MLT1C LTR MaLR 1 415 -52 257 87 29 58 chr3 13238030 13238099 -204799059 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 812 165 0 8 chr3 13238320 13238453 -204798705 + AluJb SINE Alu 3 134 -178 1415 189 35 3 chr3 13238469 13238754 -204798404 + AluJb SINE Alu 5 298 -14 372 22 0 0 chr3 13238837 13238882 -204798276 + (CA)n Simple_repeat Simple_repeat 2 46 0 14249 102 44 85 chr3 13238883 13239659 -204797499 - Tigger1 DNA MER2_type -1 2417 1610 2131 104 3 0 chr3 13239659 13239946 -204797212 - AluSx SINE Alu -24 288 1 722 112 0 0 chr3 13239953 13240051 -204797107 - AluSg/x SINE Alu -16 294 197 14249 102 44 85 chr3 13240051 13240064 -204797094 - Tigger1 DNA MER2_type -814 1604 1592 2289 88 0 0 chr3 13240064 13240358 -204796800 - AluSg SINE Alu -16 294 1 14249 102 44 85 chr3 13240358 13240657 -204796501 - Tigger1 DNA MER2_type -826 1592 1282 2058 121 3 0 chr3 13240657 13240962 -204796196 - AluSg1 SINE Alu -3 306 1 14249 102 44 85 chr3 13240962 13241797 -204795361 - Tigger1 DNA MER2_type -1136 1282 509 840 150 0 15 chr3 13241797 13241930 -204795228 - FLAM_C SINE Alu -2 131 1 14249 102 44 85 chr3 13241930 13242419 -204794739 - Tigger1 DNA MER2_type -1909 509 1 200 182 0 0 chr3 13242499 13242532 -204794626 + GA-rich Low_complexity Low_complexity 3 35 0 1521 138 20 30 chr3 13242553 13242858 -204794300 + AluSx SINE Alu 1 302 -10 2218 169 51 5 chr3 13243290 13243699 -204793459 - MSTA LTR MaLR 0 428 1 1058 232 0 36 chr3 13243795 13244045 -204793113 + L1M3e LINE L1 1 241 -6789 1345 104 22 6 chr3 13444520 13444703 -204592455 + AluSg/x SINE Alu 117 302 -10 292 321 10 14 chr3 13444705 13444995 -204592163 + AluYa5 SINE Alu 3 291 -10 1343 223 144 70 chr3 13445712 13446358 -204590800 + L1MC5 LINE L1 6837 7530 -431 321 287 46 40 chr3 13446441 13446615 -204590543 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr3 13446619 13446726 -204590432 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr3 13446646 13446730 -204590428 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 241 230 50 40 chr3 13447369 13447469 -204589689 + MIR SINE MIR 101 201 -61 3166 156 70 15 chr3 13447511 13448166 -204588992 + L1MB5 LINE L1 5475 6165 -9 330 237 0 41 chr3 13448170 13448281 -204588877 - L1MC4 LINE L1 -1339 6983 1996 224 218 55 0 chr3 13448300 13448355 -204588803 + L2 LINE L2 3186 3243 -29 294 279 19 19 chr3 13448387 13448491 -204588667 - MIR3 SINE MIR -22 186 83 362 196 0 72 chr3 13448520 13448617 -204588541 - MIR SINE MIR -70 192 103 1549 271 175 17 chr3 13448795 13449700 -204587458 + L2 LINE L2 2196 3245 -68 448 307 39 20 chr3 13449947 13450100 -204587058 - MIR SINE MIR -99 163 8 2251 71 0 14 chr3 13452213 13452493 -204584665 + AluY SINE Alu 1 276 -35 225 0 0 0 chr3 13452496 13452521 -204584637 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 451 243 125 7 chr3 13452600 13452736 -204584422 + MIR SINE MIR 89 240 -22 2350 90 0 3 chr3 13452938 13453238 -204583920 + AluSg1 SINE Alu 1 299 -10 476 242 202 40 chr3 13455127 13455375 -204581783 + L2 LINE L2 3025 3312 -1 2342 64 0 58 chr3 13455375 13455688 -204581470 - AluY SINE Alu -16 295 1 562 222 49 69 chr3 13455770 13455973 -204581185 - MIR SINE MIR 0 262 64 2265 109 0 26 chr3 13456767 13457071 -204580087 - AluSx SINE Alu -16 296 1 196 286 0 32 chr3 13457071 13457134 -204580024 - L2 LINE L2 -7 3265 3205 2337 116 0 0 chr3 13457149 13457450 -204579708 - AluSg SINE Alu -7 303 3 304 268 0 0 chr3 13457463 13457534 -204579624 - L2 LINE L2 -1 3271 3201 299 271 0 0 chr3 13457537 13457607 -204579551 - L2 LINE L2 0 3272 3203 248 257 0 43 chr3 13457611 13457681 -204579477 - L2 LINE L2 0 3272 3206 2467 91 3 0 chr3 13457809 13458117 -204579041 + AluSc SINE Alu 1 309 0 21 0 0 0 chr3 13458239 13458260 -204578898 + AT_rich Low_complexity Low_complexity 1 21 0 185 244 22 0 chr3 13458267 13458312 -204578846 - L2 LINE L2 0 3313 3268 1041 166 16 21 chr3 13458383 13458397 -204578761 + AluJb SINE Alu 120 133 -179 2410 101 7 0 chr3 13458397 13458704 -204578454 + AluSg SINE Alu 1 309 -1 1041 166 16 21 chr3 13458704 13458882 -204578276 + AluJb SINE Alu 133 311 -1 2336 103 0 0 chr3 13459312 13459612 -204577546 + AluY SINE Alu 1 300 -11 1823 158 3 14 chr3 13459629 13459921 -204577237 + AluJo SINE Alu 8 296 -16 774 185 51 6 chr3 13459973 13460130 -204577028 - MIR SINE MIR -78 184 21 2168 113 10 3 chr3 13461166 13461458 -204575700 - AluSx SINE Alu -18 294 1 2524 58 0 7 chr3 13461525 13461833 -204575325 - AluY SINE Alu -5 306 1 670 272 154 59 chr3 13461834 13462224 -204574934 + L2 LINE L2 2887 3313 0 259 211 0 0 chr3 13462419 13462471 -204574687 + L1ME3 LINE L1 6046 6097 -65 2366 99 7 0 chr3 13462476 13462778 -204574380 + AluSg SINE Alu 1 304 -6 2598 59 0 3 chr3 13462803 13463107 -204574051 + AluY SINE Alu 1 303 -8 1908 169 0 0 chr3 13463240 13463554 -204573604 - AluJb SINE Alu 0 314 1 228 67 0 0 chr3 13463609 13463639 -204573519 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 325 244 74 25 chr3 13464876 13464997 -204572161 + MIR SINE MIR 103 228 -34 * 353 260 39 10 chr3 13464960 13465064 -204572094 - MIR SINE MIR -3 259 153 2445 68 0 7 chr3 13465064 13465359 -204571799 - AluY SINE Alu -18 293 1 683 209 52 119 chr3 13465381 13465564 -204571594 + L1ME LINE L1 5289 5440 -722 599 179 0 0 chr3 13465564 13465670 -204571488 + U6 snRNA snRNA 2 107 0 683 209 52 119 chr3 13465670 13465830 -204571328 + L1ME LINE L1 5440 5609 -553 299 208 28 14 chr3 13465830 13465902 -204571256 - MIR SINE MIR -98 164 92 390 231 46 9 chr3 13465921 13466029 -204571129 + MIR SINE MIR 148 259 -3 402 145 14 0 chr3 13469204 13469273 -204567885 - AluJ/FLAM SINE Alu -241 71 2 1215 111 0 115 chr3 13469445 13469495 -204567663 + L1PB1 LINE L1 5926 5980 -171 2280 114 0 0 chr3 13469495 13469794 -204567364 + AluSq SINE Alu 1 299 -14 2159 91 3 14 chr3 13469804 13470113 -204567045 + AluSx SINE Alu 1 306 0 1215 111 0 115 chr3 13470113 13470303 -204566855 + L1PB1 LINE L1 5990 6149 -2 1657 184 0 20 chr3 13470380 13470673 -204566485 - AluJo SINE Alu -25 287 1 212 320 40 0 chr3 13470938 13471013 -204566145 - MIR SINE MIR -64 144 67 452 233 0 0 chr3 13471582 13471668 -204565490 - L2 LINE L2 -33 3239 3154 1021 78 39 0 chr3 13471826 13471954 -204565204 - AluSq/x SINE Alu -180 133 1 2584 60 0 3 chr3 13471965 13472267 -204564891 - AluY SINE Alu -10 301 1 182 315 11 22 chr3 13472268 13472357 -204564801 - L2 LINE L2 -236 3036 2949 302 368 159 7 chr3 13472463 13472765 -204564393 + L2 LINE L2 2924 3271 -1 349 217 26 11 chr3 13472797 13472953 -204564205 - MIR SINE MIR -37 225 3 572 271 101 0 chr3 13473918 13474106 -204563052 + MIR SINE MIR 38 244 -18 195 42 0 0 chr3 13474433 13474457 -204562701 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 278 275 99 15 chr3 13474500 13474631 -204562527 + L2 LINE L2 3160 3301 -12 1829 123 0 112 chr3 13474634 13474974 -204562184 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr3 13475195 13475223 -204561935 + AT_rich Low_complexity Low_complexity 1 28 0 894 143 8 0 chr3 13475298 13475424 -204561734 - FLAM_C SINE Alu -16 127 1 298 115 0 0 chr3 13475636 13475688 -204561470 - Alu SINE Alu -2 300 249 448 114 0 0 chr3 13475970 13476040 -204561118 - L1MB7 LINE L1 -52 6132 6063 518 159 7 80 chr3 13476646 13476662 -204560496 - LTR37A LTR ERV1 -52 374 358 1924 149 45 0 chr3 13476662 13476951 -204560207 + AluSx SINE Alu 1 302 -10 518 159 7 80 chr3 13476951 13477072 -204560086 - LTR37A LTR ERV1 -68 358 247 620 154 19 0 chr3 13477074 13477178 -204559980 + FLAM_C SINE Alu 2 107 -36 415 88 0 0 chr3 13477215 13477272 -204559886 + FLAM_A SINE Alu 50 106 -36 434 155 10 0 chr3 13477279 13477376 -204559782 + (CA)n Simple_repeat Simple_repeat 2 99 0 846 196 162 25 chr3 13477376 13477580 -204559578 + AluJo SINE Alu 76 307 -5 197 342 51 0 chr3 13477838 13477917 -204559241 - MIR SINE MIR -116 146 64 267 284 62 0 chr3 13477959 13478040 -204559118 - L2 LINE L2 -1 3271 3186 227 235 245 10 chr3 13478045 13478143 -204559015 + L2 LINE L2 3192 3312 -1 2161 122 0 3 chr3 13478487 13478782 -204558376 + AluSx SINE Alu 1 294 -18 1313 192 59 59 chr3 13478889 13479221 -204557937 - L1MB4 LINE L1 0 6180 5849 1975 96 78 14 chr3 13479221 13479503 -204557655 - AluSg1 SINE Alu -9 300 1 2647 65 0 0 chr3 13479513 13479822 -204557336 - AluSc SINE Alu 0 309 1 1313 192 59 59 chr3 13479822 13479853 -204557305 - L1MB4 LINE L1 -339 5841 5806 1423 180 103 4 chr3 13480172 13480444 -204556714 - AluJo SINE Alu -13 299 1 307 284 149 14 chr3 13480544 13480692 -204556466 - MIR SINE MIR -73 189 22 2114 111 27 10 chr3 13481132 13481429 -204555729 - AluSx SINE Alu -10 302 1 2250 138 0 0 chr3 13481462 13481774 -204555384 - AluSx SINE Alu 0 312 1 605 191 0 30 chr3 13482543 13482674 -204554484 + FLAM_A SINE Alu 1 127 -6 1295 31 0 0 chr3 13482679 13482842 -204554316 + L1PA2 LINE L1 5993 6155 0 2328 52 41 17 chr3 13482854 13483144 -204554014 + AluY SINE Alu 1 297 -14 2177 135 3 3 chr3 13483540 13483852 -204553306 + AluSx SINE Alu 1 312 0 2350 113 0 0 chr3 13484760 13485062 -204552096 - AluSq SINE Alu -11 302 1 1806 132 33 59 chr3 13485075 13485378 -204551780 - AluSx SINE Alu -17 295 1 387 233 86 55 chr3 13485415 13485598 -204551560 - L1ME1 LINE L1 -2 6164 5905 26 74 0 0 chr3 13485600 13485654 -204551504 + AT_rich Low_complexity Low_complexity 1 54 0 231 36 0 0 chr3 13485694 13485722 -204551436 + (TG)n Simple_repeat Simple_repeat 1 28 0 2568 63 0 0 chr3 13485880 13486181 -204550977 + AluSg SINE Alu 1 301 -9 2285 127 0 3 chr3 13486708 13487016 -204550142 + AluSx SINE Alu 1 307 -5 2456 65 3 19 chr3 13487139 13487449 -204549709 + AluSp SINE Alu 1 305 -8 358 313 27 34 chr3 13487732 13487879 -204549279 - MIR SINE MIR -19 243 98 2097 116 0 41 chr3 13487921 13488240 -204548918 - AluSq SINE Alu -7 306 1 2382 74 0 17 chr3 13488416 13488715 -204548443 + AluSp SINE Alu 1 294 -19 1986 144 13 7 chr3 13489045 13489344 -204547814 - AluJb SINE Alu -11 301 1 2021 122 17 7 chr3 13489384 13489671 -204547487 + AluSx SINE Alu 1 290 -22 2294 112 0 3 chr3 13489828 13490132 -204547026 + AluSq SINE Alu 1 303 -10 180 111 0 0 chr3 13490132 13490159 -204546999 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 1814 114 28 48 chr3 13490241 13490530 -204546628 + AluJb SINE Alu 1 283 -29 2524 71 0 7 chr3 13490530 13490838 -204546320 + AluSx SINE Alu 1 306 -6 910 112 15 175 chr3 13491599 13491805 -204545353 + AluJb SINE Alu 130 302 -10 207 0 0 0 chr3 13492137 13492160 -204544998 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 842 164 0 0 chr3 13492160 13492282 -204544876 - AluJb SINE Alu -190 122 1 2145 107 3 17 chr3 13492497 13492795 -204544363 - AluSx SINE Alu -16 296 3 2131 109 3 7 chr3 13492807 13493101 -204544057 - AluSg SINE Alu -17 293 1 1811 173 10 7 chr3 13493162 13493457 -204543701 + AluJb SINE Alu 10 305 -7 1888 148 7 7 chr3 13493697 13493995 -204543163 - AluSx SINE Alu -14 298 1 2672 58 3 0 chr3 13494005 13494316 -204542842 - AluSx SINE Alu 0 312 1 1423 180 103 4 chr3 13494666 13494938 -204542220 - AluJo SINE Alu -13 299 1 335 284 149 14 chr3 13495038 13495186 -204541972 - MIR SINE MIR -73 189 22 2106 111 27 10 chr3 13495621 13495918 -204541240 - AluSx SINE Alu -10 302 1 2239 138 0 0 chr3 13495951 13496263 -204540895 - AluSx SINE Alu 0 312 1 531 202 0 25 chr3 13497032 13497151 -204540007 + FLAM_A SINE Alu 1 116 -17 307 359 36 26 chr3 13497272 13497467 -204539691 - L1MC/D LINE L1 -2036 5772 5576 1293 169 31 63 chr3 13497581 13497835 -204539323 + AluJb SINE Alu 1 246 -66 312 86 69 0 chr3 13497902 13497985 -204539173 + AluJb SINE Alu 241 327 0 1718 149 3 57 chr3 13498001 13498317 -204538841 + AluJo SINE Alu 13 311 -1 769 291 189 19 chr3 13498531 13499013 -204538145 - L3 LINE CR1 -291 1286 723 507 277 174 0 chr3 13499642 13499837 -204537321 - MIR SINE MIR -14 248 20 1026 114 0 0 chr3 13499858 13499990 -204537168 - AluSq/x SINE Alu -180 132 1 2216 124 0 0 chr3 13500536 13500835 -204536323 - AluSx SINE Alu -13 299 1 297 243 48 95 chr3 13500885 13501095 -204536063 - HAL1 LINE L1 -72 2435 2236 480 251 52 31 chr3 13501116 13501307 -204535851 - HAL1 LINE L1 -335 2172 1978 535 284 43 34 chr3 13501371 13501723 -204535435 + L1MC5 LINE L1 7428 7782 -179 2406 91 0 0 chr3 13501785 13502082 -204535076 + AluSx SINE Alu 1 297 -15 1721 176 20 16 chr3 13502106 13502412 -204534746 - AluJb SINE Alu -5 307 1 1849 160 14 10 chr3 13502414 13502708 -204534450 - AluJo SINE Alu -17 295 1 708 156 117 7 chr3 13502708 13502862 -204534296 - L1MB8 LINE L1 -347 5831 5661 1078 110 0 61 chr3 13502864 13503097 -204534061 - AluSc SINE Alu 0 309 4 2221 108 3 13 chr3 13503110 13503415 -204533743 - AluSx SINE Alu -10 302 1 2280 113 0 0 chr3 13503425 13503725 -204533433 - AluSq SINE Alu -13 300 1 291 102 0 20 chr3 13503726 13503775 -204533383 - L1PB2 LINE L1 -178 5973 5926 2312 92 3 3 chr3 13503946 13504238 -204532920 + AluSx SINE Alu 1 292 -20 2358 75 0 0 chr3 13504548 13504872 -204532286 + AluY SINE Alu 1 324 0 952 171 0 6 chr3 13504899 13505057 -204532101 - FRAM SINE Alu -9 157 1 1052 157 48 56 chr3 13505061 13505216 -204531942 - L1MB8 LINE L1 -699 5481 5326 1576 229 0 3 chr3 13505216 13505521 -204531637 - AluJb SINE Alu -8 304 1 1052 157 48 56 chr3 13505521 13505702 -204531456 - L1MB8 LINE L1 -854 5326 5148 2140 133 3 0 chr3 13505702 13506002 -204531156 - AluSc SINE Alu -8 301 1 1052 157 48 56 chr3 13506002 13506045 -204531113 - L1MB8 LINE L1 -1032 5148 5106 2210 101 9 28 chr3 13506486 13506803 -204530355 - AluSx SINE Alu -1 311 1 2044 192 76 64 chr3 13507483 13507743 -204529415 - L1MB8 LINE L1 -1015 5131 4875 2388 64 0 55 chr3 13507743 13508055 -204529103 + AluY SINE Alu 1 295 -16 2044 192 76 64 chr3 13508055 13508179 -204528979 - L1MB8 LINE L1 -1271 4875 4754 2227 103 0 7 chr3 13508179 13508469 -204528689 + AluY SINE Alu 1 288 -23 2044 192 76 64 chr3 13508469 13508704 -204528454 - L1MB8 LINE L1 -1392 4754 4504 1741 183 9 25 chr3 13508704 13508741 -204528417 - AluJb SINE Alu 0 312 276 261 0 0 0 chr3 13508741 13508770 -204528388 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1741 183 9 25 chr3 13508770 13509049 -204528109 - AluJb SINE Alu -36 276 1 497 88 0 15 chr3 13510324 13510414 -204526744 - Alu SINE Alu 0 310 222 876 108 8 8 chr3 13510414 13510543 -204526615 - AluSq/x SINE Alu -183 129 1 2304 102 3 3 chr3 13510858 13511161 -204525997 + AluSx SINE Alu 1 303 -9 441 0 0 0 chr3 13511162 13511211 -204525947 + (TA)n Simple_repeat Simple_repeat 1 49 0 648 227 35 0 chr3 13511216 13511357 -204525801 + MER5A DNA MER1_type 5 150 -39 2150 104 31 0 chr3 13512021 13512308 -204524850 + AluSx SINE Alu 1 296 -16 2529 52 7 3 chr3 13512668 13512973 -204524185 - AluY SINE Alu -3 308 3 532 96 0 0 chr3 13513060 13513133 -204524025 + AluS SINE Alu 6 78 -234 643 194 0 39 chr3 13514206 13514335 -204522823 + FLAM_A SINE Alu 18 141 -1 2265 94 3 16 chr3 13514879 13515187 -204521971 - AluSg SINE Alu 0 310 7 2320 82 3 3 chr3 13515218 13515509 -204521649 - AluY SINE Alu -20 291 1 578 146 18 36 chr3 13515511 13515621 -204521537 - L1M4 LINE L1 -509 5669 5562 305 333 54 0 chr3 13515627 13515756 -204521402 - MIR3 SINE MIR -71 137 2 296 232 0 12 chr3 13515957 13516039 -204521119 - L1MB8 LINE L1 -9 6169 6089 438 322 181 43 chr3 13516041 13516310 -204520848 + L2 LINE L2 2868 3195 -77 1731 83 0 9 chr3 13516310 13516538 -204520620 - AluY SINE Alu -6 305 80 438 322 181 43 chr3 13516538 13516623 -204520535 + L2 LINE L2 3195 3267 -5 444 243 79 13 chr3 13517033 13517185 -204519973 + MLT1K LTR MaLR 419 580 -8 1316 107 122 0 chr3 13517378 13517583 -204519575 - MER30 DNA MER1_type 0 230 1 1789 79 0 0 chr3 13517857 13518072 -204519086 - AluSq SINE Alu -16 297 83 188 240 0 20 chr3 13518291 13518341 -204518817 + L2 LINE L2 2931 2979 -334 750 157 16 0 chr3 13518586 13518707 -204518451 + FLAM_C SINE Alu 1 123 -10 219 36 0 0 chr3 13519636 13519664 -204517494 + (TA)n Simple_repeat Simple_repeat 2 29 0 2245 101 0 14 chr3 13519664 13519961 -204517197 - AluSg1 SINE Alu -16 293 1 534 293 28 83 chr3 13520441 13520694 -204516464 - MIR SINE MIR -8 254 16 584 254 67 6 chr3 13521142 13521307 -204515851 + FRAM SINE Alu 1 175 -1 1629 156 0 50 chr3 13521318 13521601 -204515557 + AluJo SINE Alu 9 277 -35 486 0 0 0 chr3 13521602 13521656 -204515502 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2697 179 74 59 chr3 13521701 13522418 -204514740 - L1MB7 LINE L1 -17 6167 5440 2425 88 0 0 chr3 13522419 13522714 -204514444 - AluSg SINE Alu -15 295 1 1884 99 3 128 chr3 13522723 13523067 -204514091 - AluSg1 SINE Alu -8 301 1 959 214 37 7 chr3 13523077 13523348 -204513810 - L1MB4 LINE L1 0 6180 5902 778 186 164 0 chr3 13523375 13523515 -204513643 - FRAM SINE Alu -19 157 1 3983 200 62 34 chr3 13523555 13524121 -204513037 - L1MB4 LINE L1 -1144 5002 4396 2292 106 0 0 chr3 13524121 13524413 -204512745 - AluSc SINE Alu -17 292 1 3983 200 62 34 chr3 13524413 13524837 -204512321 - L1MB4 LINE L1 -1750 4396 3985 1148 151 0 0 chr3 13524837 13525003 -204512155 - AluSg/x SINE Alu -11 301 136 2423 94 3 0 chr3 13525005 13525312 -204511846 - AluSp SINE Alu -5 308 1 2352 92 0 3 chr3 13525486 13525781 -204511377 - AluSc SINE Alu -15 294 1 22 35 0 0 chr3 13525822 13525851 -204511307 + AT_rich Low_complexity Low_complexity 1 29 0 405 251 131 0 chr3 13525910 13526101 -204511057 - L1ME LINE L1 -303 5818 5603 722 139 42 69 chr3 13526114 13526234 -204510924 + FLAM_C SINE Alu 2 124 -83 2289 108 7 0 chr3 13526234 13526529 -204510629 + AluSp SINE Alu 1 297 -16 2581 55 0 6 chr3 13526532 13526844 -204510314 + AluY SINE Alu 1 310 -1 722 139 42 69 chr3 13526844 13526929 -204510229 + FLAM_C SINE Alu 126 207 0 775 153 0 69 chr3 13526930 13527074 -204510084 + AluJo SINE Alu 2 135 -177 2138 122 20 3 chr3 13527076 13527379 -204509779 + AluSx SINE Alu 1 308 -4 793 135 23 23 chr3 13527446 13527579 -204509579 - FLAM_C SINE Alu 0 133 1 1571 132 115 65 chr3 13527846 13527971 -204509187 + THE1C LTR MaLR 1 118 -257 2449 93 0 0 chr3 13527971 13528273 -204508885 - AluSg1 SINE Alu -7 302 1 1571 132 115 65 chr3 13528273 13528503 -204508655 + THE1C LTR MaLR 118 374 -1 884 133 21 0 chr3 13529112 13529255 -204507903 - MER46B DNA MER2_type 0 236 91 1522 178 75 42 chr3 13529255 13529615 -204507543 - MER21A LTR ERV1 0 931 560 330 58 0 39 chr3 13529609 13529661 -204507497 - AluJo SINE Alu -8 294 245 * 896 212 41 0 chr3 13529663 13529833 -204507325 - AluJo SINE Alu -135 177 1 970 137 71 18 chr3 13529833 13530074 -204507084 - MER21B LTR ERV1 -376 487 214 976 145 7 0 chr3 13530079 13530224 -204506934 + AluJo SINE Alu 17 162 -150 328 113 65 0 chr3 13530224 13530286 -204506872 - MER21A LTR ERV1 -863 68 3 725 191 170 0 chr3 13530286 13530474 -204506684 - MER46B DNA MER2_type -141 95 1 2392 100 7 0 chr3 13530668 13530969 -204506189 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 13531357 13531380 -204505778 + (A)n Simple_repeat Simple_repeat 1 23 0 1931 126 75 10 chr3 13531523 13531680 -204505478 - AluSq SINE Alu -1 312 167 2279 91 0 10 chr3 13531680 13531987 -204505171 - AluY SINE Alu -6 305 2 1931 126 75 10 chr3 13531987 13532122 -204505036 - AluSq SINE Alu -146 167 1 354 348 59 27 chr3 13532352 13532380 -204504778 + L2 LINE L2 3120 3146 -167 2413 91 3 0 chr3 13532380 13532678 -204504480 - AluSg SINE Alu -11 299 1 354 348 59 27 chr3 13532678 13532836 -204504322 + L2 LINE L2 3146 3312 -1 552 115 73 10 chr3 13532985 13533081 -204504077 + U13 snRNA snRNA 3 104 0 2054 122 0 7 chr3 13533109 13533405 -204503753 + AluJb SINE Alu 3 296 -16 216 263 53 0 chr3 13534095 13534171 -204502987 - MIR SINE MIR -119 143 64 2595 52 0 0 chr3 13534172 13534477 -204502681 - AluSg SINE Alu -5 305 1 270 330 21 0 chr3 13534623 13534720 -204502438 - L2 LINE L2 -89 3183 3085 2007 103 10 55 chr3 13534950 13535261 -204501897 - AluSx SINE Alu -15 297 1 1955 116 0 4 chr3 13535294 13535562 -204501596 - AluSc SINE Alu -25 284 18 335 377 84 0 chr3 13535586 13535753 -204501405 - L2 LINE L2 -566 2748 2568 1511 154 17 80 chr3 13536019 13536318 -204500840 + AluJo SINE Alu 3 282 -30 1019 159 12 114 chr3 13536324 13536569 -204500589 - AluJo SINE Alu -7 305 86 801 33 16 58 chr3 13536588 13536709 -204500449 - L1PA4 LINE L1 0 6155 6040 435 62 10 82 chr3 13536731 13536789 -204500369 + L1MB3 LINE L1 6094 6144 -39 1800 123 0 12 chr3 13536789 13537042 -204500116 + AluSx SINE Alu 49 298 -14 435 62 10 82 chr3 13537042 13537080 -204500078 + L1MB3 LINE L1 6144 6183 0 2491 87 0 3 chr3 13537256 13537568 -204499590 + AluY SINE Alu 1 311 0 340 58 115 0 chr3 13537572 13537624 -204499534 - L1ME3 LINE L1 -12 6150 6093 989 204 0 4 chr3 13538357 13538588 -204498570 - AluY SINE Alu -81 230 1 1195 178 82 10 chr3 13538588 13538891 -204498267 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 13538895 13538939 -204498219 + (TA)n Simple_repeat Simple_repeat 1 44 0 665 200 0 23 chr3 13538950 13539080 -204498078 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 13539218 13539260 -204497898 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2342 101 0 3 chr3 13539317 13539623 -204497535 - AluSg SINE Alu -3 307 3 2388 105 0 0 chr3 13539625 13539929 -204497229 - AluSx SINE Alu -6 306 3 841 155 0 0 chr3 13539960 13540089 -204497069 - FLAM_C SINE Alu 0 133 5 451 278 74 11 chr3 13540089 13540265 -204496893 - MIR SINE MIR -55 207 21 271 82 0 7 chr3 13540612 13540659 -204496499 - AluYa8 SINE Alu -106 194 156 189 295 70 78 chr3 13540944 13541073 -204496085 - L2 LINE L2 -212 3060 2933 757 187 9 98 chr3 13541159 13541249 -204495909 - MER3 DNA MER1_type -8 201 105 2051 87 23 65 chr3 13541249 13541558 -204495600 + AluSq SINE Alu 2 297 -16 757 187 9 98 chr3 13541558 13541681 -204495477 - MER3 DNA MER1_type -104 105 7 495 223 192 8 chr3 13542344 13542474 -204494684 - MER5A DNA MER1_type -6 183 30 486 332 67 5 chr3 13542509 13542702 -204494456 - MIR SINE MIR -38 224 20 206 196 0 71 chr3 13542769 13542825 -204494333 - MIR SINE MIR -55 153 102 459 224 197 27 chr3 13542870 13543017 -204494141 + MER5A DNA MER1_type 18 189 0 1924 137 16 19 chr3 13543028 13543341 -204493817 - AluSx SINE Alu 0 312 1 2189 115 3 7 chr3 13543935 13544230 -204492928 - AluSx SINE Alu -18 294 1 2014 146 0 0 chr3 13544232 13544513 -204492645 - AluSx SINE Alu -31 281 1 1319 211 73 35 chr3 13544922 13545291 -204491867 - L1MC4 LINE L1 -144 7898 7516 2460 80 0 6 chr3 13545300 13545611 -204491547 - AluY SINE Alu -2 309 1 551 291 124 27 chr3 13545630 13545977 -204491181 + L1MB4 LINE L1 5445 5823 -1985 2420 98 0 13 chr3 13545977 13546284 -204490874 + AluSx SINE Alu 1 303 -9 2498 59 0 0 chr3 13546285 13546574 -204490584 + AluY SINE Alu 2 290 -21 637 137 0 0 chr3 13547551 13547646 -204489512 + AluJo/FLAM SINE Alu 35 129 -183 2207 68 0 0 chr3 13547648 13547966 -204489192 + AluY SINE Alu 1 318 0 2233 76 14 0 chr3 13548018 13548309 -204488849 + AluY SINE Alu 1 295 -16 2080 138 0 0 chr3 13549081 13549393 -204487765 + AluSx SINE Alu 1 312 0 1961 111 27 10 chr3 13549426 13549723 -204487435 + AluSx SINE Alu 1 302 -10 330 284 149 14 chr3 13550163 13550311 -204486847 + MIR SINE MIR 22 189 -73 1280 180 103 4 chr3 13550411 13550683 -204486475 + AluJo SINE Alu 1 299 -13 2486 65 0 0 chr3 13551033 13551342 -204485816 + AluSc SINE Alu 1 309 0 1824 88 81 15 chr3 13551352 13551625 -204485533 + AluSg1 SINE Alu 1 291 -18 1379 202 73 9 chr3 13551625 13551966 -204485192 + L1MB4 LINE L1 5818 6180 0 2009 122 0 3 chr3 13552073 13552368 -204484790 - AluSx SINE Alu -18 294 1 254 235 235 0 chr3 13552712 13552810 -204484348 - L2 LINE L2 -1 3312 3192 * 287 226 49 78 chr3 13552794 13552896 -204484262 + L2 LINE L2 3214 3312 -1 206 362 43 0 chr3 13552923 13553017 -204484141 + MIR SINE MIR 49 146 -116 851 186 162 25 chr3 13553275 13553479 -204483679 - AluJo SINE Alu -5 307 76 452 152 10 0 chr3 13553479 13553578 -204483580 + (TG)n Simple_repeat Simple_repeat 2 101 0 434 88 0 0 chr3 13553585 13553642 -204483516 - FLAM_A SINE Alu -36 106 50 648 154 19 0 chr3 13553679 13553783 -204483375 - FLAM_C SINE Alu -36 107 2 547 159 7 80 chr3 13553785 13553906 -204483252 + LTR37A LTR ERV1 247 358 -68 1771 149 45 0 chr3 13553906 13554195 -204482963 - AluSx SINE Alu -10 302 1 547 159 7 80 chr3 13554195 13554211 -204482947 + LTR37A LTR ERV1 358 374 -52 471 114 0 0 chr3 13554817 13554887 -204482271 + L1MB7 LINE L1 6063 6132 -52 320 113 0 0 chr3 13555169 13555222 -204481936 + Alu SINE Alu 249 301 -1 827 143 8 0 chr3 13555433 13555559 -204481599 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 13555634 13555662 -204481496 + AT_rich Low_complexity Low_complexity 1 28 0 1693 121 0 112 chr3 13555883 13556223 -204480935 - AluJo SINE Alu -10 302 1 298 237 130 46 chr3 13556226 13556357 -204480801 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 13556400 13556424 -204480734 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 610 261 112 11 chr3 13556751 13556939 -204480219 - MIR SINE MIR -18 244 38 183 280 192 48 chr3 13557769 13557894 -204479264 + MIR SINE MIR 119 261 -1 373 217 26 11 chr3 13557904 13558060 -204479098 + MIR SINE MIR 3 225 -37 335 332 175 15 chr3 13558126 13558394 -204478764 - L2 LINE L2 -38 3234 2924 196 315 11 22 chr3 13558500 13558589 -204478569 + L2 LINE L2 2949 3036 -236 2293 62 0 3 chr3 13558590 13558878 -204478280 + AluY SINE Alu 1 287 -24 549 174 7 83 chr3 13558987 13559131 -204478027 + FLAM_C SINE Alu 2 134 -9 1777 148 20 3 chr3 13559135 13559438 -204477720 + AluSx SINE Alu 1 308 -4 780 135 23 23 chr3 13559505 13559638 -204477520 - FLAM_C SINE Alu 0 133 1 1549 132 115 65 chr3 13559905 13560030 -204477128 + THE1C LTR MaLR 1 118 -257 2300 93 0 0 chr3 13560030 13560332 -204476826 - AluSg1 SINE Alu -7 302 1 1549 132 115 65 chr3 13560332 13560562 -204476596 + THE1C LTR MaLR 118 374 -1 927 133 21 0 chr3 13561171 13561314 -204475844 - MER46B DNA MER2_type 0 236 91 1646 178 75 42 chr3 13561314 13561674 -204475484 - MER21A LTR ERV1 0 931 560 350 58 0 39 chr3 13561668 13561720 -204475438 - AluJo SINE Alu -8 294 245 * 813 212 41 0 chr3 13561722 13561892 -204475266 - AluJo SINE Alu -135 177 1 1038 137 71 18 chr3 13561892 13562133 -204475025 - MER21B LTR ERV1 -376 487 214 899 141 7 0 chr3 13562141 13562283 -204474875 + AluJo SINE Alu 20 162 -150 346 113 65 0 chr3 13562283 13562345 -204474813 - MER21A LTR ERV1 -863 68 3 770 186 170 0 chr3 13562345 13562533 -204474625 - MER46B DNA MER2_type -141 95 1 2241 100 7 0 chr3 13562727 13563028 -204474130 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 13563416 13563439 -204473719 + (A)n Simple_repeat Simple_repeat 1 23 0 1785 122 75 14 chr3 13563582 13563739 -204473419 - AluSq SINE Alu -1 312 166 2232 82 0 7 chr3 13563739 13564045 -204473113 - AluY SINE Alu -6 305 2 1785 122 75 14 chr3 13564045 13564181 -204472977 - AluSq SINE Alu -147 166 1 2349 50 0 0 chr3 13564253 13564558 -204472600 + AluY SINE Alu 1 305 0 1307 184 4 16 chr3 13564907 13565157 -204472001 - AluJo SINE Alu -63 249 3 819 131 0 51 chr3 13565167 13565304 -204471854 - FLAM_C SINE Alu -2 131 2 1908 128 10 3 chr3 13565342 13565631 -204471527 - AluSx SINE Alu -20 292 2 1193 178 4 21 chr3 13565648 13565884 -204471274 - AluJo SINE Alu -4 308 77 1526 125 4 93 chr3 13565884 13566191 -204470967 + AluSx SINE Alu 29 310 0 943 155 0 42 chr3 13566191 13566359 -204470799 + AluJo/FRAM SINE Alu 135 295 -17 2334 76 0 3 chr3 13566876 13567178 -204469980 + AluYa5 SINE Alu 1 301 -10 2183 89 3 10 chr3 13567423 13567736 -204469422 + AluY SINE Alu 1 311 0 180 0 0 0 chr3 13567970 13567990 -204469168 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2271 101 0 0 chr3 13568663 13568969 -204468189 + AluSg SINE Alu 1 306 -4 574 252 8 8 chr3 13568973 13569100 -204468058 + MIR SINE MIR 28 154 -108 2074 114 0 3 chr3 13570327 13570626 -204466532 + AluSx SINE Alu 1 298 -14 5669 82 25 23 chr3 13570636 13570847 -204466311 - L1MA3 LINE L1 -28 6277 6068 1985 134 0 0 chr3 13570847 13571145 -204466013 + AluSx SINE Alu 1 298 -14 5669 82 25 23 chr3 13571145 13571749 -204465409 - L1MA3 LINE L1 -237 6068 5461 6990 54 14 8 chr3 13571762 13573306 -204463852 - SVA Other Other -760 1386 29 717 93 0 0 chr3 13573308 13573415 -204463743 + (A)n Simple_repeat Simple_repeat 1 107 0 331 228 13 19 chr3 13573437 13573595 -204463563 + G-rich Low_complexity Low_complexity 3 159 0 717 247 51 11 chr3 13574028 13574206 -204462952 - AluSg/x SINE Alu -52 258 74 8487 145 62 29 chr3 13574216 13575864 -204461294 - L1M1 LINE L1 -743 5403 3776 2163 99 0 10 chr3 13575864 13576167 -204460991 - AluSx SINE Alu -12 300 1 8487 145 62 29 chr3 13576167 13576296 -204460862 - L1M1 LINE L1 -2370 3776 3653 2118 117 0 0 chr3 13576656 13576956 -204460202 + AluSx SINE Alu 1 300 -12 181 283 75 57 chr3 13577053 13577159 -204459999 + MER5C DNA MER1_type 4 111 -213 1477 108 0 0 chr3 13578382 13578585 -204458573 - AluSg/x SINE Alu -20 292 90 512 301 44 22 chr3 13579364 13579547 -204457611 + MIR SINE MIR 75 261 -1 228 322 54 47 chr3 13580000 13580149 -204457009 + L2 LINE L2 2598 2747 -567 1997 139 0 7 chr3 13580226 13580528 -204456630 - AluSx SINE Alu -12 300 1 1564 116 86 60 chr3 13580679 13580981 -204456177 + AluSx SINE Alu 1 310 -2 2087 110 7 3 chr3 13581139 13581448 -204455710 + AluSx SINE Alu 1 310 -2 2151 23 4 12 chr3 13581545 13581804 -204455354 - L1PA4 LINE L1 0 6155 5899 697 281 95 18 chr3 13582039 13582260 -204454898 - MIR SINE MIR -10 252 15 2136 119 128 44 chr3 13582299 13582712 -204454446 - MER83 LTR ERV1 0 448 1 524 272 98 53 chr3 13583424 13583498 -204453660 + MIR SINE MIR 6 75 -187 2128 102 14 0 chr3 13583498 13583792 -204453366 - AluSq SINE Alu -15 298 1 524 272 98 53 chr3 13583792 13583858 -204453300 + MIR SINE MIR 75 137 -125 2188 73 7 13 chr3 13583858 13584158 -204453000 - AluY SINE Alu -13 298 1 524 272 98 53 chr3 13584158 13584262 -204452896 + MIR SINE MIR 137 262 0 1664 204 0 0 chr3 13584367 13584675 -204452483 + AluJb SINE Alu 1 308 -4 2491 205 57 29 chr3 13584675 13585328 -204451830 + L1M3 LINE L1 4469 5139 -1007 2166 123 0 0 chr3 13586018 13586327 -204450831 + AluSc SINE Alu 1 309 0 1172 136 58 43 chr3 13586328 13586525 -204450633 + L1M3 LINE L1 5123 5332 -848 1564 201 0 3 chr3 13586525 13586828 -204450330 + AluJb SINE Alu 1 302 -10 1172 136 58 43 chr3 13586828 13586974 -204450184 + L1M3 LINE L1 5332 5474 -706 852 194 0 12 chr3 13586975 13587135 -204450023 + FRAM SINE Alu 1 150 -26 36 0 0 0 chr3 13587135 13587171 -204449987 + AT_rich Low_complexity Low_complexity 1 36 0 1991 130 13 3 chr3 13587185 13587501 -204449657 + L1M3 LINE L1 5478 5796 -384 2088 106 0 0 chr3 13587502 13587817 -204449341 + AluSx SINE Alu 1 315 0 225 0 0 0 chr3 13587830 13587855 -204449303 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2275 82 0 0 chr3 13587859 13588150 -204449008 - AluY SINE Alu -20 291 1 1995 110 3 7 chr3 13588461 13588752 -204448406 - AluSx SINE Alu -20 292 3 262 184 23 46 chr3 13588901 13588988 -204448170 + Tigger4(Zombi) DNA MER2_type 2506 2590 -141 346 113 65 0 chr3 13588988 13589050 -204448108 + MER21A LTR ERV1 3 68 -863 899 141 7 0 chr3 13589050 13589192 -204447966 - AluJo SINE Alu -150 162 20 370 147 39 25 chr3 13589200 13589329 -204447829 + MER21A LTR ERV1 214 364 -499 330 62 0 0 chr3 13589324 13589372 -204447786 + Alu SINE Alu 255 302 0 * 2216 97 0 7 chr3 13589478 13589777 -204447381 - AluSx SINE Alu -15 297 1 1595 180 20 7 chr3 13589780 13590075 -204447083 - AluJo SINE Alu -8 304 6 517 259 113 8 chr3 13590188 13590427 -204446731 + L1ME4a LINE L1 5820 6083 -38 1762 114 52 7 chr3 13590684 13590955 -204446203 + AluSq SINE Alu 1 283 -30 189 0 0 0 chr3 13590958 13590979 -204446179 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 192 314 157 33 chr3 13591373 13591494 -204445664 - L2 LINE L2 -1 3271 3136 555 215 233 34 chr3 13592236 13592455 -204444703 + MLT1H LTR MaLR 20 194 -355 1865 157 3 3 chr3 13592455 13592767 -204444391 + AluJo SINE Alu 1 312 0 555 215 233 34 chr3 13592767 13592895 -204444263 + MLT1H LTR MaLR 194 295 -254 1892 110 34 14 chr3 13592895 13593186 -204443972 + AluSx SINE Alu 1 297 -15 555 215 233 34 chr3 13593186 13593231 -204443927 + MLT1H LTR MaLR 295 541 -8 2741 3 0 0 chr3 13593255 13593558 -204443600 + AluYa5 SINE Alu 1 303 -8 1463 170 17 35 chr3 13593755 13594044 -204443114 - AluJo SINE Alu -12 300 17 2144 115 7 0 chr3 13594205 13594510 -204442648 + AluSx SINE Alu 1 307 -5 1989 108 3 7 chr3 13594560 13594856 -204442302 + AluSc SINE Alu 1 295 -14 2360 70 0 3 chr3 13595397 13595697 -204441461 + AluY SINE Alu 1 299 -12 260 211 202 0 chr3 13595837 13595941 -204441217 - MIR SINE MIR -68 140 16 358 58 115 0 chr3 13596079 13596131 -204441027 + L1ME3 LINE L1 6093 6150 -12 2384 80 0 3 chr3 13596135 13596447 -204440711 - AluY SINE Alu 0 311 1 449 62 10 82 chr3 13596623 13596661 -204440497 - L1MB3 LINE L1 0 6183 6144 1673 123 0 12 chr3 13596661 13596914 -204440244 - AluSx SINE Alu -14 298 49 449 62 10 82 chr3 13596914 13596972 -204440186 - L1MB3 LINE L1 -39 6144 6094 806 34 0 60 chr3 13596998 13597115 -204440043 + L1PA6 LINE L1 6045 6154 0 917 154 12 117 chr3 13597134 13597374 -204439784 + AluJo SINE Alu 86 300 -12 1376 154 17 80 chr3 13597385 13597684 -204439474 - AluJo SINE Alu -30 282 3 327 377 84 0 chr3 13597950 13598117 -204439041 + L2 LINE L2 2568 2748 -566 1826 116 0 4 chr3 13598141 13598409 -204438749 + AluSc SINE Alu 18 284 -25 1865 103 10 55 chr3 13598442 13598753 -204438405 + AluSx SINE Alu 1 297 -15 258 330 21 0 chr3 13598983 13599080 -204438078 + L2 LINE L2 3085 3183 -89 2455 52 0 0 chr3 13599227 13599532 -204437626 + AluSg SINE Alu 1 305 -5 206 263 53 0 chr3 13599533 13599609 -204437549 + MIR SINE MIR 64 143 -119 2075 102 10 7 chr3 13599968 13600263 -204436895 - AluSx SINE Alu -16 296 1 2223 98 0 3 chr3 13601317 13601613 -204435545 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr3 13601960 13601982 -204435176 + AT_rich Low_complexity Low_complexity 1 22 0 1545 165 49 0 chr3 13602486 13602771 -204434387 + AluSx SINE Alu 1 299 -13 2265 97 0 0 chr3 13603573 13603882 -204433276 + AluSc SINE Alu 1 309 0 204 375 68 17 chr3 13604262 13604438 -204432720 + L2 LINE L2 2572 2756 -558 210 234 0 0 chr3 13604541 13604588 -204432570 - L2 LINE L2 0 3313 3267 1707 149 10 36 chr3 13604663 13604971 -204432187 + AluJb SINE Alu 1 300 -12 2101 112 0 0 chr3 13604971 13605258 -204431900 + AluSg SINE Alu 1 287 -23 849 197 26 21 chr3 13605411 13605604 -204431554 - AluSx SINE Alu -117 195 2 1441 137 92 11 chr3 13606197 13606459 -204430699 + AluSx SINE Alu 14 296 -16 1832 158 0 10 chr3 13606467 13606765 -204430393 + AluSx SINE Alu 7 301 -11 1892 80 6 80 chr3 13606814 13607128 -204430030 - AluSg SINE Alu -19 291 1 2222 110 0 0 chr3 13607407 13607715 -204429443 - AluSc SINE Alu 0 309 2 1273 160 5 0 chr3 13607750 13607950 -204429208 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 13607992 13608284 -204428874 + AluJo SINE Alu 1 292 -20 817 289 174 60 chr3 13609506 13610391 -204426767 + L2 LINE L2 2233 3232 -40 1831 163 0 0 chr3 13610448 13610743 -204426415 + AluJb SINE Alu 1 295 -17 261 174 0 0 chr3 13610743 13610789 -204426369 - MLT2D LTR ERVL -365 49 4 1481 216 24 0 chr3 13610813 13611109 -204426049 + L1ME LINE L1 5374 5676 -488 2386 66 0 0 chr3 13611110 13611411 -204425747 + AluY SINE Alu 1 301 -10 2059 111 0 0 chr3 13611515 13611795 -204425363 - AluSg SINE Alu -30 280 1 1707 149 10 36 chr3 13611795 13612103 -204425055 - AluJb SINE Alu -11 301 1 210 234 0 0 chr3 13612178 13612225 -204424933 + L2 LINE L2 3267 3313 0 204 375 68 17 chr3 13612328 13612504 -204424654 - L2 LINE L2 -558 2756 2572 2265 97 0 0 chr3 13612883 13613192 -204423966 - AluSc SINE Alu 0 309 1 1545 165 49 0 chr3 13613994 13614279 -204422879 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 13614783 13614805 -204422353 + AT_rich Low_complexity Low_complexity 1 22 0 2223 98 0 3 chr3 13615152 13615448 -204421710 - AluSg SINE Alu -15 295 1 2197 90 0 7 chr3 13616502 13616801 -204420357 + AluSq SINE Alu 1 297 -16 228 35 0 0 chr3 13616967 13616996 -204420162 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1860 121 11 0 chr3 13617004 13617268 -204419890 - AluSq SINE Alu -46 267 1 426 283 96 26 chr3 13617381 13617564 -204419594 - MIR SINE MIR -50 212 20 2279 87 3 16 chr3 13617944 13618256 -204418902 - AluSg SINE Alu 0 310 3 1831 174 0 0 chr3 13618576 13618880 -204418278 - AluJb SINE Alu -7 305 2 562 184 0 0 chr3 13618892 13618995 -204418163 + AluJb SINE Alu 203 305 -7 756 101 0 0 chr3 13619315 13619414 -204417744 + AluSg SINE Alu 3 101 -209 1888 160 3 0 chr3 13620185 13620492 -204416666 - AluJb SINE Alu -4 308 1 23 33 0 0 chr3 13621672 13621702 -204415456 + AT_rich Low_complexity Low_complexity 1 30 0 204 240 20 0 chr3 13622404 13622454 -204414704 - MIR SINE MIR -99 163 113 756 71 0 0 chr3 13623379 13623477 -204413681 - AluY SINE Alu -9 302 205 9164 42 2 1 chr3 13624386 13625456 -204411702 - MER11C LTR ERVK 0 1071 1 668 270 81 16 chr3 13625655 13625840 -204411318 - MIR SINE MIR -65 197 1 717 218 0 0 chr3 13626846 13626979 -204410179 + FLAM_C SINE Alu 6 138 -5 2187 106 0 0 chr3 13626980 13627273 -204409885 + AluSg SINE Alu 3 295 -15 1362 159 83 25 chr3 13627414 13627691 -204409467 + AluJo SINE Alu 1 293 -19 1907 130 7 7 chr3 13627882 13628174 -204408984 - AluSx SINE Alu -20 292 1 2140 92 14 0 chr3 13628288 13628580 -204408578 + AluSx SINE Alu 1 296 -16 2087 115 3 3 chr3 13628878 13629183 -204407975 - AluSc SINE Alu -4 305 1 1799 127 40 10 chr3 13629636 13629935 -204407223 - AluSx SINE Alu -4 308 1 1231 169 19 100 chr3 13630458 13630778 -204406380 + AluJo SINE Alu 1 294 -18 469 245 29 103 chr3 13630845 13630925 -204406233 + MER5A DNA MER1_type 1 85 -104 2102 94 7 0 chr3 13630925 13631212 -204405946 + AluSx SINE Alu 7 295 -17 469 245 29 103 chr3 13631212 13631335 -204405823 + MER5A DNA MER1_type 85 189 0 2392 70 0 0 chr3 13631542 13631843 -204405315 - AluY SINE Alu -10 301 1 1481 216 24 0 chr3 13631844 13632140 -204405018 - L1ME LINE L1 -488 5676 5374 261 174 0 0 chr3 13632164 13632210 -204404948 + MLT2D LTR ERVL 4 49 -365 1831 163 0 0 chr3 13632210 13632505 -204404653 - AluJb SINE Alu -17 295 1 817 289 174 60 chr3 13632562 13633447 -204403711 - L2 LINE L2 -40 3232 2233 1791 175 0 0 chr3 13634669 13634961 -204402197 - AluJo SINE Alu -20 292 1 31 82 0 0 chr3 13635114 13635187 -204401971 + GC_rich Low_complexity Low_complexity 1 73 0 256 252 69 44 chr3 13635451 13635610 -204401548 + AluY SINE Alu 139 301 0 1589 160 0 47 chr3 13635734 13635869 -204401289 + AluJb SINE Alu 12 152 -160 2190 98 3 0 chr3 13635869 13636174 -204400984 + AluSp SINE Alu 1 306 -7 1589 160 0 47 chr3 13636174 13636338 -204400820 + AluJb SINE Alu 152 297 -15 490 88 0 15 chr3 13637681 13637771 -204399387 - Alu SINE Alu 0 311 223 815 108 8 8 chr3 13637771 13637900 -204399258 - AluSq/x SINE Alu -184 129 1 191 257 86 76 chr3 13637942 13638047 -204399111 - MIR SINE MIR -37 225 120 2156 102 3 3 chr3 13638217 13638520 -204398638 + AluSx SINE Alu 1 303 -9 441 0 0 0 chr3 13638521 13638570 -204398588 + (TA)n Simple_repeat Simple_repeat 2 50 0 639 227 35 0 chr3 13638575 13638716 -204398442 + MER5A DNA MER1_type 5 150 -39 2012 104 31 0 chr3 13639380 13639667 -204397491 + AluSx SINE Alu 1 296 -16 2388 52 7 3 chr3 13640027 13640332 -204396826 - AluY SINE Alu -3 308 3 522 96 0 0 chr3 13640419 13640492 -204396666 + AluS SINE Alu 6 78 -235 626 183 0 40 chr3 13641568 13641694 -204395464 + FLAM_A SINE Alu 21 141 -1 2124 95 3 0 chr3 13642251 13642545 -204394613 - AluSg SINE Alu -9 301 7 2224 69 3 3 chr3 13642576 13642867 -204394291 - AluY SINE Alu -20 291 1 2346 82 0 0 chr3 13643025 13643328 -204393830 + AluSx SINE Alu 1 303 -9 2130 122 0 3 chr3 13643855 13644158 -204393000 + AluSx SINE Alu 1 302 -10 2296 65 3 19 chr3 13644286 13644596 -204392562 + AluSp SINE Alu 1 305 -8 384 313 27 34 chr3 13644879 13645026 -204392132 - MIR SINE MIR -19 243 98 2047 103 0 41 chr3 13645068 13645387 -204391771 - AluSq SINE Alu -7 306 1 2228 74 0 17 chr3 13645563 13645862 -204391296 + AluSp SINE Alu 1 294 -19 1786 144 17 7 chr3 13646192 13646490 -204390668 - AluJb SINE Alu -11 301 1 1905 118 17 7 chr3 13646530 13646817 -204390341 + AluSx SINE Alu 1 290 -22 2135 112 0 3 chr3 13646974 13647278 -204389880 + AluSq SINE Alu 1 303 -10 407 195 0 0 chr3 13647209 13647286 -204389872 + AluSp/q SINE Alu 235 311 -2 180 111 0 0 chr3 13647278 13647305 -204389853 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 * 1787 114 28 48 chr3 13647387 13647676 -204389482 + AluJb SINE Alu 1 283 -29 2496 71 0 7 chr3 13647676 13647984 -204389174 + AluSx SINE Alu 1 306 -6 219 197 115 0 chr3 13649089 13649150 -204388008 - L2 LINE L2 -455 2859 2792 1628 153 34 27 chr3 13649708 13649970 -204387188 + AluJo SINE Alu 1 264 -48 2010 141 7 10 chr3 13650138 13650444 -204386714 - AluSx SINE Alu -7 305 1 2180 103 14 0 chr3 13650726 13651018 -204386140 + AluSx SINE Alu 6 301 -11 280 190 0 127 chr3 13651187 13651242 -204385916 + Tigger2 DNA MER2_type 1 31 -403 1989 150 3 3 chr3 13651242 13651535 -204385623 - AluSx SINE Alu -19 293 1 280 190 0 127 chr3 13651535 13651558 -204385600 + Tigger2 DNA MER2_type 31 55 -379 * 1234 118 98 10 chr3 13651542 13651745 -204385413 + Tigger2 DNA MER2_type 2267 2487 -231 427 99 56 14 chr3 13651745 13651849 -204385309 - AluSc SINE Alu 0 311 205 * 485 73 0 0 chr3 13651844 13651912 -204385246 + Alu SINE Alu 236 303 -9 2131 132 0 3 chr3 13651922 13652217 -204384941 + AluSx SINE Alu 1 294 -18 1392 73 0 0 chr3 13652779 13652944 -204384214 - AluSg/x SINE Alu -14 298 134 2189 134 0 0 chr3 13652944 13653242 -204383916 - AluSx SINE Alu -14 298 1 1059 159 43 19 chr3 13653861 13654069 -204383089 + L1MB7 LINE L1 5925 6137 -47 198 277 0 21 chr3 13654212 13654259 -204382899 + MIR3 SINE MIR 114 159 -49 765 186 117 0 chr3 13654486 13654631 -204382527 - AluSp SINE Alu -17 296 135 2138 79 6 103 chr3 13654632 13654972 -204382186 - AluSx SINE Alu -5 307 1 1658 153 0 62 chr3 13655178 13655485 -204381673 + AluJo SINE Alu 6 293 -19 2319 96 3 0 chr3 13656179 13656481 -204380677 - AluSg1 SINE Alu -6 303 1 2408 93 3 0 chr3 13656481 13656783 -204380375 - AluSx SINE Alu -9 303 1 313 198 40 87 chr3 13656880 13656921 -204380237 - MLT1D LTR MaLR 0 505 464 2309 93 0 23 chr3 13656921 13657231 -204379927 + AluSc SINE Alu 1 303 -6 313 198 40 87 chr3 13657231 13657315 -204379843 - MLT1D LTR MaLR -41 464 386 364 258 29 1 chr3 13657315 13657400 -204379758 - AluJ/FLAM SINE Alu -224 78 1 * 1607 250 36 50 chr3 13657400 13657861 -204379297 - MLT1E2 LTR MaLR -132 494 39 2047 127 0 7 chr3 13657861 13658152 -204379006 - AluSx SINE Alu -22 290 2 1607 250 36 50 chr3 13658152 13658179 -204378979 - MLT1E2 LTR MaLR -587 39 13 2398 102 0 0 chr3 13658557 13658861 -204378297 + AluSx SINE Alu 1 304 -8 2432 57 0 20 chr3 13660053 13660354 -204376804 + AluY SINE Alu 1 295 -16 1933 110 57 11 chr3 13660546 13660827 -204376331 + AluSx SINE Alu 1 294 -18 2185 120 0 10 chr3 13661064 13661363 -204375795 + AluSq SINE Alu 1 296 -17 655 198 9 0 chr3 13661428 13661544 -204375614 + FLAM_A SINE Alu 1 117 -16 23 33 0 0 chr3 13661544 13661574 -204375584 + AT_rich Low_complexity Low_complexity 1 30 0 2340 94 0 3 chr3 13661580 13661877 -204375281 - AluSc SINE Alu -12 297 2 29 0 0 0 chr3 13661913 13661942 -204375216 + AT_rich Low_complexity Low_complexity 1 29 0 1287 156 13 36 chr3 13661962 13662187 -204374971 + AluJo SINE Alu 75 294 -18 942 29 0 0 chr3 13662426 13662531 -204374627 + AluSc SINE Alu 1 105 -204 1129 111 81 77 chr3 13662671 13662906 -204374252 + MER46A DNA MER2_type 1 236 0 1877 153 3 7 chr3 13662934 13663222 -204373936 + AluJo SINE Alu 1 287 -25 703 172 52 0 chr3 13663234 13663368 -204373790 + FLAM_C SINE Alu 2 142 -1 1944 143 0 31 chr3 13663565 13663885 -204373273 + AluSx SINE Alu 1 311 0 1590 131 0 0 chr3 13663971 13664193 -204372965 - AluSg/x SINE Alu -6 304 83 962 115 0 0 chr3 13664226 13664356 -204372802 - FLAM_C SINE Alu -2 131 2 535 87 0 33 chr3 13664385 13664477 -204372681 + FLAM_A SINE Alu 54 142 0 336 324 83 0 chr3 13664529 13664674 -204372484 - MIR3 SINE MIR 0 208 52 22 0 0 0 chr3 13664948 13664970 -204372188 + AT_rich Low_complexity Low_complexity 1 22 0 1529 191 7 7 chr3 13664975 13665258 -204371900 + AluJo SINE Alu 6 288 -24 218 269 104 0 chr3 13665375 13665442 -204371716 - L2 LINE L2 -50 3222 3149 288 192 112 36 chr3 13665690 13665812 -204371346 + L1ME1 LINE L1 5226 5365 -814 2038 125 54 0 chr3 13665812 13666107 -204371051 + AluSx SINE Alu 1 311 -1 288 192 112 36 chr3 13666107 13666123 -204371035 + L1ME1 LINE L1 5365 5378 -801 540 194 0 0 chr3 13666137 13666235 -204370923 + U13 snRNA snRNA 5 102 -2 1896 142 55 2 chr3 13666256 13666708 -204370450 + L1MA9 LINE L1 5193 5780 -532 2343 78 3 0 chr3 13666709 13666992 -204370166 + AluSp SINE Alu 2 285 -28 762 198 25 35 chr3 13667008 13667210 -204369948 + L1MA9 LINE L1 5935 6134 -178 1093 196 56 82 chr3 13667210 13667304 -204369854 - AluJb SINE Alu -14 298 203 3429 109 77 38 chr3 13667304 13667862 -204369296 + LTR19B LTR ERV1 1 580 0 1656 101 0 0 chr3 13667862 13668071 -204369087 - AluSq SINE Alu -104 209 1 1093 196 56 82 chr3 13668071 13668281 -204368877 - AluJb SINE Alu -107 205 1 360 148 0 0 chr3 13668298 13668352 -204368806 + L1ME1 LINE L1 5365 5418 -748 6068 133 291 14 chr3 13668353 13669681 -204367477 - pTR5 LTR ERV1 0 2438 743 2198 188 85 62 chr3 13669681 13669767 -204367391 + L1ME1 LINE L1 5413 5496 -670 2460 70 7 0 chr3 13669767 13670068 -204367090 + AluY SINE Alu 1 303 -8 2198 188 85 62 chr3 13670068 13670594 -204366564 + L1ME1 LINE L1 5496 6039 -127 634 76 0 0 chr3 13670607 13670686 -204366472 - AluSg/x SINE Alu -14 296 218 2245 94 0 13 chr3 13670863 13671162 -204365996 - AluY SINE Alu -16 295 1 2032 135 13 7 chr3 13671280 13671584 -204365574 - AluJb SINE Alu -6 306 1 2181 112 7 3 chr3 13671820 13672124 -204365034 - AluSx SINE Alu -7 305 1 1966 137 4 0 chr3 13672400 13672678 -204364480 - AluJb SINE Alu -15 297 19 2000 132 7 3 chr3 13672827 13673116 -204364042 + AluSx SINE Alu 1 290 -22 408 166 122 0 chr3 13673635 13673774 -204363384 - AluYa5 SINE Alu -16 285 130 1508 176 20 20 chr3 13674287 13674582 -204362576 + AluSc SINE Alu 6 300 -9 28 48 0 0 chr3 13674880 13674922 -204362236 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 13676116 13676138 -204361020 + AT_rich Low_complexity Low_complexity 1 22 0 983 115 7 14 chr3 13676319 13676467 -204360691 - AluSg/x SINE Alu -7 303 157 751 168 0 24 chr3 13676790 13676915 -204360243 + FLAM_C SINE Alu 2 123 -20 1441 174 0 38 chr3 13677091 13677355 -204359803 - AluJb SINE Alu -31 281 28 445 275 76 65 chr3 13677389 13677771 -204359387 + L1ME LINE L1 5297 5682 -439 682 130 30 0 chr3 13677788 13677888 -204359270 + U6 snRNA snRNA 1 103 -4 277 70 70 0 chr3 13678043 13678086 -204359072 - MADE1 DNA Mariner 0 80 35 2178 109 0 3 chr3 13678241 13678524 -204358634 - AluSx SINE Alu -26 286 5 2353 103 0 3 chr3 13678816 13679117 -204358041 - AluSx SINE Alu -12 300 1 233 311 0 0 chr3 13679374 13679435 -204357723 + L2 LINE L2 3211 3271 -1 24 0 0 0 chr3 13679794 13679818 -204357340 + AT_rich Low_complexity Low_complexity 1 24 0 2433 72 7 7 chr3 13680266 13680572 -204356586 - AluY SINE Alu -5 306 1 280 170 0 19 chr3 13680700 13680753 -204356405 + MER5B DNA MER1_type 5 56 -122 1818 162 3 23 chr3 13681152 13681461 -204355697 + AluJb SINE Alu 5 307 -5 301 188 145 34 chr3 13681578 13681695 -204355463 + L1ME4a LINE L1 5976 6105 -16 2111 114 3 0 chr3 13682142 13682432 -204354726 - AluSg SINE Alu -19 291 1 372 89 0 18 chr3 13684622 13684835 -204352323 + AluSx SINE Alu 1 292 -8 201 263 0 0 chr3 13685281 13685338 -204351820 + T-rich Low_complexity Low_complexity 1 57 0 273 119 24 0 chr3 13685338 13685380 -204351778 - LTR23 LTR ERV1 -78 359 317 2355 104 0 0 chr3 13685396 13685703 -204351455 - AluY SINE Alu -3 308 2 2265 115 0 0 chr3 13685832 13686136 -204351022 - AluSg SINE Alu -6 304 1 2403 83 0 3 chr3 13686289 13686589 -204350569 - AluY SINE Alu -12 299 1 497 289 81 9 chr3 13686977 13687188 -204349970 - L3 LINE CR1 -726 851 626 2202 113 0 3 chr3 13688539 13688841 -204348317 - AluSq SINE Alu -12 301 1 267 357 60 12 chr3 13690048 13690300 -204346858 - L2 LINE L2 -203 3069 2806 2482 70 3 0 chr3 13690581 13690880 -204346278 + AluY SINE Alu 3 302 -9 2121 111 17 0 chr3 13691041 13691329 -204345829 + AluSp SINE Alu 1 293 -20 2902 10 0 3 chr3 13691335 13691647 -204345511 + AluYa5 SINE Alu 1 311 0 21 0 0 0 chr3 13691965 13691986 -204345172 + AT_rich Low_complexity Low_complexity 1 21 0 266 179 179 32 chr3 13692012 13692107 -204345051 - MIR SINE MIR -79 183 75 1322 104 0 6 chr3 13692757 13692930 -204344228 - AluSg/x SINE Alu -17 293 122 7489 17 1 0 chr3 13692930 13693804 -204343354 + L1PA3 LINE L1 5310 6184 0 191 143 114 0 chr3 13693949 13693984 -204343174 - L2 LINE L2 -13 3259 3221 1737 149 0 4 chr3 13694185 13694467 -204342691 + AluJb SINE Alu 23 303 0 864 130 0 0 chr3 13694571 13694709 -204342449 + (TA)n Simple_repeat Simple_repeat 2 139 0 2623 55 0 0 chr3 13694709 13695017 -204342141 - AluY SINE Alu -3 308 1 23 0 0 0 chr3 13695075 13695098 -204342060 + AT_rich Low_complexity Low_complexity 1 23 0 237 313 12 0 chr3 13695292 13695375 -204341783 - L1MC/D LINE L1 -1911 5897 5814 1960 168 26 8 chr3 13695381 13695762 -204341396 - L1MB4 LINE L1 -1 6179 5792 514 83 46 37 chr3 13695766 13695874 -204341284 + AluY SINE Alu 2 110 -201 225 188 0 0 chr3 13696045 13696093 -204341065 + A-rich Low_complexity Low_complexity 1 48 0 183 156 0 0 chr3 13696294 13696326 -204340832 + T-rich Low_complexity Low_complexity 1 32 0 6182 65 31 9 chr3 13696594 13697619 -204339539 - SVA Other Other -518 868 32 910 139 42 69 chr3 13697756 13697775 -204339383 - AluJo SINE Alu -92 220 202 2438 74 0 6 chr3 13697775 13698087 -204339071 - AluY SINE Alu -1 310 1 2265 108 7 0 chr3 13698090 13698385 -204338773 - AluSp SINE Alu -16 297 1 910 139 42 69 chr3 13698385 13698506 -204338652 - AluJo SINE Alu -112 200 1 465 246 131 0 chr3 13698518 13698709 -204338449 + L1ME LINE L1 5603 5818 -303 22 35 0 0 chr3 13698768 13698797 -204338361 + AT_rich Low_complexity Low_complexity 1 29 0 2316 92 0 3 chr3 13698838 13699133 -204338025 + AluSc SINE Alu 1 294 -15 2313 97 3 3 chr3 13699307 13699615 -204337543 + AluSp SINE Alu 1 308 -5 2206 125 0 6 chr3 13699680 13699991 -204337167 - AluSx SINE Alu -3 309 1 801 237 6 17 chr3 13700015 13700192 -204336966 + MER5B DNA MER1_type 4 178 0 427 226 182 17 chr3 13700363 13700420 -204336738 + MIR SINE MIR 2 48 -214 2456 171 88 11 chr3 13700420 13700864 -204336294 - MER66A LTR ERV1 0 478 1 427 226 182 17 chr3 13700864 13700987 -204336171 + MIR SINE MIR 48 212 -50 409 296 22 79 chr3 13701806 13702083 -204335075 - MIR3 SINE MIR 0 262 2 272 294 125 22 chr3 13702106 13702242 -204334916 + MIR SINE MIR 61 210 -52 727 215 101 0 chr3 13702331 13702489 -204334669 + MIR SINE MIR 86 259 -3 226 111 56 0 chr3 13702512 13702566 -204334592 - LTR66 LTR ERVL -171 439 383 1805 141 39 0 chr3 13702585 13702868 -204334290 - AluJo SINE Alu -18 294 1 1162 158 42 0 chr3 13703008 13703198 -204333960 - AluJo SINE Alu 0 312 115 1891 117 7 33 chr3 13703198 13703497 -204333661 + AluSg SINE Alu 1 291 -19 427 290 70 55 chr3 13703993 13704193 -204332965 - MER63A DNA MER1_type -3 207 5 287 289 125 13 chr3 13704621 13704773 -204332385 + MIR SINE MIR 72 240 -22 309 209 0 30 chr3 13705317 13705384 -204331774 + L3 LINE CR1 1227 1291 -286 347 263 74 0 chr3 13706180 13706275 -204330883 + L2 LINE L2 3195 3296 -17 260 250 15 0 chr3 13706357 13706425 -204330733 + (TA)n Simple_repeat Simple_repeat 2 70 0 210 202 0 56 chr3 13706714 13706803 -204330355 + A-rich Low_complexity Low_complexity 1 84 0 4709 238 32 7 chr3 13706920 13708110 -204329048 - L1P LINE L1 -3497 2649 1430 14612 71 19 7 chr3 13708229 13709194 -204327964 + L1P LINE L1 2706 3658 -2488 366 23 0 0 chr3 13709194 13709237 -204327921 + (CA)n Simple_repeat Simple_repeat 2 44 0 14612 71 19 7 chr3 13709237 13710251 -204326907 + L1P LINE L1 3658 4708 -1438 181 361 85 23 chr3 13710393 13710523 -204326635 - MIR3 SINE MIR -61 147 10 32 57 0 0 chr3 13710824 13710877 -204326281 + AT_rich Low_complexity Low_complexity 1 53 0 291 195 109 70 chr3 13710877 13711005 -204326153 - MER113 DNA MER1_type? -386 135 3 203 171 0 0 chr3 13711069 13711110 -204326048 + (TA)n Simple_repeat Simple_repeat 2 42 0 1571 228 78 38 chr3 13711635 13712162 -204324996 + L1ME1 LINE L1 5593 6140 -26 293 250 114 23 chr3 13712189 13712277 -204324881 + L1MC/D LINE L1 5476 5571 -2471 3986 92 58 0 chr3 13712295 13712860 -204324298 - L1PA10 LINE L1 0 6168 5571 334 269 0 48 chr3 13713009 13713195 -204323963 + A-rich Low_complexity Low_complexity 2 178 0 12243 80 13 2 chr3 13713657 13715325 -204321833 - L1PA10 LINE L1 -812 5334 3649 356 297 46 3 chr3 13715435 13715574 -204321584 + MIR SINE MIR 48 191 -64 436 192 208 0 chr3 13716132 13716252 -204320906 + MIR SINE MIR 28 172 -90 434 312 60 44 chr3 13716810 13717060 -204320098 + MIR SINE MIR 8 261 -1 187 162 88 88 chr3 13717054 13717122 -204320036 - MIR SINE MIR -111 151 84 * 320 313 68 7 chr3 13717358 13717505 -204319653 - L3 LINE CR1 -794 783 628 7640 100 17 2 chr3 13717930 13718967 -204318191 - L1P3 LINE L1 -5408 1053 1 359 279 299 0 chr3 13719867 13720111 -204317047 - MER5C DNA MER1_type -6 318 2 2688 159 98 12 chr3 13721165 13721729 -204315429 - LTR1B LTR ERV1 0 785 145 401 264 43 14 chr3 13722176 13722316 -204314842 + MLT1K LTR MaLR 374 517 -71 278 265 12 36 chr3 13722390 13722473 -204314685 + MIR SINE MIR 121 201 -61 214 314 64 64 chr3 13722544 13722700 -204314458 + MIR SINE MIR 20 175 -87 234 360 67 0 chr3 13724117 13724192 -204312966 + L2 LINE L2 3143 3222 -50 596 338 40 4 chr3 13724212 13724440 -204312718 + MIR SINE MIR 20 255 -7 280 296 93 9 chr3 13724904 13725012 -204312146 - MIR SINE MIR -52 210 94 749 344 106 34 chr3 13725309 13726015 -204311143 + L2 LINE L2 2083 2839 -475 743 279 72 34 chr3 13726445 13727088 -204310070 + L1ME LINE L1 36 756 -5640 276 250 0 56 chr3 13727088 13727160 -204309998 + AluYb8 SINE Alu 125 192 -116 384 211 0 0 chr3 13727161 13727232 -204309926 - AluJ/FRAM SINE Alu 0 302 232 8569 143 37 20 chr3 13727865 13729286 -204307872 + Tigger1 DNA MER2_type 1 1444 -974 1300 253 103 54 chr3 13729386 13730086 -204307072 + L1MC4 LINE L1 7309 8042 0 557 277 158 33 chr3 13730367 13731261 -204305897 + L1ME LINE L1 4534 5546 -685 2730 67 56 0 chr3 13731361 13731667 -204305491 - L1P LINE L1 -3512 2634 2302 181 57 57 0 chr3 13731667 13731702 -204305456 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2730 67 56 0 chr3 13731702 13731768 -204305390 - L1P LINE L1 -3844 2302 2241 490 316 60 23 chr3 13731791 13732006 -204305152 + MIR SINE MIR 33 255 -7 1701 302 32 13 chr3 13732184 13732741 -204304417 + L1M2b LINE L1 19 586 -6623 316 155 121 0 chr3 13732744 13732802 -204304356 + Charlie3 DNA MER1_type 6 70 -2640 * 1436 162 57 142 chr3 13732788 13733140 -204304018 + Charlie3 DNA MER1_type 17 2711 0 361 248 77 43 chr3 13733209 13733326 -204303832 + L1M2b LINE L1 677 797 -6412 337 270 124 0 chr3 13733478 13733567 -204303591 + L1M2b LINE L1 1439 1538 -5671 1832 189 20 3 chr3 13733667 13734017 -204303141 - L1PA13 LINE L1 -4900 2674 2319 209 83 28 0 chr3 13734066 13734102 -204303056 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 242 339 38 34 chr3 13734957 13735196 -204301962 - L1PA13 LINE L1 -7341 240 1 1788 183 6 10 chr3 13735229 13735541 -204301617 - AluSx SINE Alu -1 311 1 1821 173 60 33 chr3 13735998 13736363 -204300795 + THE1C LTR MaLR 1 375 0 1550 247 57 28 chr3 13736738 13737385 -204299773 - L1MC4a LINE L1 -613 7195 6480 371 313 17 0 chr3 13738376 13738491 -204298667 - L1ME3A LINE L1 -277 5893 5777 1401 128 9 22 chr3 13738660 13738886 -204298272 - L1MB3 LINE L1 -9 6174 5952 1106 239 46 0 chr3 13738910 13739190 -204297968 - L1MC4 LINE L1 -456 7586 7294 2067 116 0 20 chr3 13739200 13739493 -204297665 - AluSq SINE Alu -26 287 1 269 213 16 16 chr3 13739494 13739555 -204297603 + MIR SINE MIR 202 262 0 241 287 25 82 chr3 13740036 13740158 -204297000 - MER5B DNA MER1_type -29 149 35 1996 108 7 10 chr3 13740161 13740449 -204296709 - AluY SINE Alu -20 291 5 408 285 52 89 chr3 13740887 13741076 -204296082 + HAL1 LINE L1 11 205 -2302 717 224 6 33 chr3 13741076 13741259 -204295899 + MER104 DNA MER2_type 2 179 -1 408 285 52 89 chr3 13741259 13741507 -204295651 + HAL1 LINE L1 205 432 -2075 275 130 74 0 chr3 13741519 13741573 -204295585 - MER53 DNA DNA -6 183 126 * 400 194 21 11 chr3 13741558 13741651 -204295507 + MER53 DNA DNA 88 181 -8 2120 119 0 31 chr3 13741795 13742113 -204295045 - AluSg SINE Alu -2 308 1 2231 127 0 3 chr3 13742126 13742433 -204294725 - AluSx SINE Alu -6 306 1 180 271 217 43 chr3 13742456 13742663 -204294495 + L2 LINE L2 2851 3093 -179 241 282 130 15 chr3 13742781 13742912 -204294246 - MIR SINE MIR -9 253 108 233 118 0 0 chr3 13743140 13743174 -204293984 + (TG)n Simple_repeat Simple_repeat 2 35 0 241 216 21 103 chr3 13744506 13744603 -204292555 - MIR SINE MIR -14 248 160 207 88 0 0 chr3 13745107 13745141 -204292017 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 750 200 0 0 chr3 13745141 13745261 -204291897 - FLAM_C SINE Alu -13 120 1 299 200 17 0 chr3 13745300 13745360 -204291798 + MIR SINE MIR 88 148 -60 226 345 81 0 chr3 13745837 13745924 -204291234 + MIR SINE MIR 29 122 -86 2259 90 3 3 chr3 13746236 13746536 -204290622 - AluSp SINE Alu 0 313 14 2235 93 0 0 chr3 13746684 13746973 -204290185 - AluY SINE Alu -17 294 6 447 100 0 0 chr3 13746993 13747063 -204290095 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1917 157 0 0 chr3 13747063 13747343 -204289815 - AluJb SINE Alu -32 280 1 2069 151 0 3 chr3 13747394 13747705 -204289453 - AluJo SINE Alu -2 310 1 2144 108 0 7 chr3 13747718 13748014 -204289144 - AluSq SINE Alu -19 294 1 676 203 112 56 chr3 13748196 13748393 -204288765 - MIR SINE MIR -50 212 5 436 232 165 61 chr3 13748416 13748580 -204288578 - MIR SINE MIR -60 202 22 405 245 129 29 chr3 13749372 13749519 -204287639 + MIR SINE MIR 6 166 -96 224 263 125 0 chr3 13749567 13749647 -204287511 + MIR SINE MIR 169 258 -4 351 308 19 0 chr3 13749655 13749762 -204287396 - MIR SINE MIR -108 154 46 2388 102 0 0 chr3 13749881 13750184 -204286974 - AluSx SINE Alu -9 303 1 577 234 48 30 chr3 13750187 13750354 -204286804 + L2 LINE L2 3135 3304 -9 1662 144 3 59 chr3 13750368 13750673 -204286485 + AluJo SINE Alu 24 311 -1 692 295 189 19 chr3 13750887 13751369 -204285789 - L3 LINE CR1 -291 1286 723 460 287 174 0 chr3 13751998 13752193 -204284965 - MIR SINE MIR -14 248 20 1031 114 0 0 chr3 13752214 13752346 -204284812 - AluSq/x SINE Alu -181 132 1 2205 127 0 0 chr3 13752892 13753191 -204283967 - AluSx SINE Alu -13 299 1 595 249 147 62 chr3 13753241 13753663 -204283495 - HAL1 LINE L1 -72 2435 1978 565 284 43 34 chr3 13753727 13754079 -204283079 + L1MC5 LINE L1 7428 7782 -179 2119 132 0 7 chr3 13754141 13754436 -204282722 + AluSx SINE Alu 1 293 -19 2578 63 0 0 chr3 13754436 13754739 -204282419 + AluY SINE Alu 1 303 -8 217 299 19 58 chr3 13755044 13755198 -204281960 + L2 LINE L2 2944 3091 -181 2308 93 3 3 chr3 13755967 13756269 -204280889 - AluSx SINE Alu -10 302 1 332 296 21 21 chr3 13756271 13756457 -204280701 - L1MC4a LINE L1 -1904 5904 5719 2442 87 0 6 chr3 13756714 13757026 -204280132 + AluY SINE Alu 1 310 -1 1342 211 73 35 chr3 13757035 13757404 -204279754 + L1MC4 LINE L1 7516 7898 -144 2022 146 0 0 chr3 13757813 13758094 -204279064 + AluSx SINE Alu 1 281 -31 2130 140 3 3 chr3 13758096 13758403 -204278755 + AluJb SINE Alu 1 307 -5 2420 91 0 0 chr3 13758427 13758724 -204278434 - AluSx SINE Alu -15 297 1 513 286 42 37 chr3 13758786 13759139 -204278019 - L1MC5 LINE L1 -179 7782 7428 586 249 147 62 chr3 13759203 13759625 -204277533 + HAL1 LINE L1 1978 2435 -72 2231 124 0 0 chr3 13759675 13759974 -204277184 + AluSx SINE Alu 1 299 -13 1031 114 0 0 chr3 13760520 13760652 -204276506 + AluSq/x SINE Alu 1 132 -180 460 287 174 0 chr3 13760673 13760868 -204276290 + MIR SINE MIR 20 248 -14 692 295 189 19 chr3 13761497 13761979 -204275179 + L3 LINE CR1 723 1286 -291 206 234 0 0 chr3 13762150 13762197 -204274961 + L3 LINE CR1 1336 1382 -195 2160 126 7 13 chr3 13762691 13763001 -204274157 + AluSx SINE Alu 1 308 -4 2248 89 10 17 chr3 13763006 13763308 -204273850 + AluSq SINE Alu 1 300 -13 2481 77 7 0 chr3 13763308 13763608 -204273550 + AluY SINE Alu 1 302 -9 616 161 0 73 chr3 13763610 13763734 -204273424 - AluJo/FLAM SINE Alu -196 116 2 407 141 12 47 chr3 13763751 13763836 -204273322 - FLAM_A SINE Alu -20 122 41 2159 142 0 3 chr3 13763836 13764132 -204273026 - AluSx SINE Alu -17 295 1 263 293 19 19 chr3 13764228 13764334 -204272824 + L2 LINE L2 2947 3052 -220 239 301 125 7 chr3 13764475 13764611 -204272547 - MIR SINE MIR -3 259 108 225 94 0 0 chr3 13764841 13764873 -204272285 + (TG)n Simple_repeat Simple_repeat 2 33 0 245 299 75 54 chr3 13766205 13766352 -204270806 - MIR SINE MIR -14 248 99 682 193 0 0 chr3 13766809 13766955 -204270203 - FLAM_C SINE Alu 0 151 6 288 200 17 0 chr3 13766999 13767059 -204270099 + MIR SINE MIR 88 148 -60 215 313 111 63 chr3 13767536 13767694 -204269464 + MIR SINE MIR 29 192 -70 2350 83 3 3 chr3 13767936 13768236 -204268922 - AluSp SINE Alu 0 313 14 2295 101 0 0 chr3 13768376 13768673 -204268485 - AluY SINE Alu -9 302 6 447 100 0 0 chr3 13768693 13768763 -204268395 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1967 157 0 0 chr3 13768763 13769043 -204268115 - AluJb SINE Alu -32 280 1 2131 151 0 3 chr3 13769094 13769406 -204267752 - AluJo SINE Alu -1 311 1 2257 98 0 7 chr3 13769419 13769715 -204267443 - AluSq SINE Alu -19 294 1 542 303 118 26 chr3 13769735 13770082 -204267076 + L1MC/D LINE L1 5445 5823 -1985 1190 113 40 28 chr3 13770082 13770259 -204266899 + AluSq SINE Alu 1 179 -134 945 98 8 0 chr3 13770475 13770598 -204266560 + AluSg/x SINE Alu 170 293 -17 680 187 88 103 chr3 13771290 13771352 -204265806 - MIR SINE MIR 0 262 201 2379 98 0 0 chr3 13771352 13771647 -204265511 + AluSx SINE Alu 1 295 -17 680 187 88 103 chr3 13771647 13771846 -204265312 - MIR SINE MIR -61 201 5 413 238 165 61 chr3 13771869 13772033 -204265125 - MIR SINE MIR -60 202 22 403 259 122 27 chr3 13772823 13772970 -204264188 + MIR SINE MIR 6 166 -96 217 275 125 0 chr3 13773018 13773098 -204264060 + MIR SINE MIR 169 258 -4 352 299 19 0 chr3 13773106 13773213 -204263945 - MIR SINE MIR -108 154 46 2388 102 0 0 chr3 13773331 13773634 -204263524 - AluSx SINE Alu -9 303 1 584 226 48 36 chr3 13773637 13773805 -204263353 + L2 LINE L2 3135 3304 -9 1534 162 26 37 chr3 13773819 13774090 -204263068 + AluJb SINE Alu 24 291 -21 2313 98 24 0 chr3 13774746 13775043 -204262115 - AluSx SINE Alu -8 304 1 708 238 48 29 chr3 13775288 13775494 -204261664 - MIR SINE MIR -51 211 2 294 278 52 0 chr3 13776025 13776122 -204261036 - MIR SINE MIR -17 245 144 1683 167 52 7 chr3 13776139 13776426 -204260732 - AluJo SINE Alu -12 300 1 2448 99 0 0 chr3 13776455 13776767 -204260391 + AluSx SINE Alu 1 312 0 2533 91 0 0 chr3 13776791 13777098 -204260060 + AluSx SINE Alu 4 310 -2 2240 98 24 3 chr3 13777819 13778114 -204259044 + AluSg SINE Alu 1 301 -9 497 233 73 0 chr3 13778122 13778272 -204258886 + L1ME1 LINE L1 5767 5927 -239 618 200 77 0 chr3 13779120 13779250 -204257908 - MIR SINE MIR -34 228 89 313 196 0 0 chr3 13779257 13779313 -204257845 + MER116 DNA Mariner 3 58 -22 2205 115 7 3 chr3 13779313 13779608 -204257550 - AluSx SINE Alu -16 296 1 2022 146 0 0 chr3 13779610 13779891 -204257267 - AluSx SINE Alu -31 281 1 1663 211 301 39 chr3 13780300 13780678 -204256480 - L1MC4 LINE L1 -144 7898 7620 2475 80 0 6 chr3 13780678 13780989 -204256169 - AluY SINE Alu -2 309 1 1663 211 301 39 chr3 13780989 13781050 -204256108 - L1MC4 LINE L1 -422 7620 7576 2031 144 0 7 chr3 13781050 13781341 -204255817 + AluJo SINE Alu 1 289 -23 1663 211 301 39 chr3 13781341 13781526 -204255632 - L1MC4 LINE L1 -466 7576 7441 1696 168 18 18 chr3 13781526 13781849 -204255309 - AluJo SINE Alu 0 323 1 204 40 0 0 chr3 13781849 13781874 -204255284 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1663 211 301 39 chr3 13781874 13782201 -204254957 - L1MC4 LINE L1 -600 7442 6639 186 327 144 0 chr3 13782294 13782398 -204254760 - MIR SINE MIR -25 237 119 2410 56 3 43 chr3 13782448 13782753 -204254405 - AluY SINE Alu -18 293 1 540 193 107 7 chr3 13782837 13783020 -204254138 + L1M4 LINE L1 4981 5185 -961 939 154 46 36 chr3 13783029 13783086 -204254072 + L1MB7 LINE L1 5107 5162 -1012 2189 117 0 3 chr3 13783086 13783377 -204253781 - AluSx SINE Alu -22 290 1 939 154 46 36 chr3 13783377 13783608 -204253550 + L1MB7 LINE L1 5162 5393 -781 1913 174 0 3 chr3 13783608 13783901 -204253257 + AluJb SINE Alu 1 292 -20 939 154 46 36 chr3 13783901 13783945 -204253213 + L1MB7 LINE L1 5393 5435 -739 875 144 0 27 chr3 13783970 13784116 -204253042 + FLAM_C SINE Alu 1 142 -1 2201 122 3 3 chr3 13784153 13784456 -204252702 + AluSp SINE Alu 1 303 -10 1666 168 14 50 chr3 13784468 13784604 -204252554 + L1MB7 LINE L1 5477 5616 -568 1729 180 3 26 chr3 13784604 13784909 -204252249 + AluJo SINE Alu 9 306 -6 1666 168 14 50 chr3 13784909 13785135 -204252023 + L1MB7 LINE L1 5616 5826 -358 1476 186 4 8 chr3 13785145 13785397 -204251761 + AluJo SINE Alu 3 253 -59 581 159 0 0 chr3 13785453 13785560 -204251598 + L1MB7 LINE L1 6062 6168 -16 2118 137 10 0 chr3 13786533 13786832 -204250326 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 13786833 13786954 -204250204 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 13786954 13787273 -204249885 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 13787273 13787382 -204249776 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 13787534 13787699 -204249459 - MIR SINE MIR -53 155 10 2148 137 0 6 chr3 13788123 13788437 -204248721 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 13788442 13788744 -204248414 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 13789522 13789653 -204247505 + FLAM_A SINE Alu 1 127 -6 2172 125 3 0 chr3 13790049 13790346 -204246812 + AluSx SINE Alu 1 298 -14 1858 135 24 17 chr3 13790412 13790708 -204246450 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 13790730 13791043 -204246115 + AluSg SINE Alu 1 310 0 2569 54 0 0 chr3 13791939 13792233 -204244925 - AluY SINE Alu -17 294 1 200 265 36 48 chr3 13793889 13793972 -204243186 - L2 LINE L2 -208 3105 3024 1967 132 51 0 chr3 13794906 13795202 -204241956 + AluSx SINE Alu 1 311 -1 1141 61 0 0 chr3 13795202 13795334 -204241824 + AluY SINE Alu 1 132 -179 236 261 161 28 chr3 13796621 13796741 -204240417 - L2 LINE L2 -171 3142 2989 2519 96 6 0 chr3 13796741 13797094 -204240064 - THE1A LTR MaLR 0 355 1 236 261 161 28 chr3 13797094 13797153 -204240005 - L2 LINE L2 -324 2989 2939 2132 124 3 22 chr3 13797816 13798130 -204239028 + AluSx SINE Alu 1 308 -4 2304 122 0 0 chr3 13798269 13798572 -204238586 - AluSg SINE Alu -7 303 1 2630 65 0 0 chr3 13798581 13798890 -204238268 - AluY SINE Alu -2 309 1 740 242 11 78 chr3 13799625 13799894 -204237264 - L1MA7 LINE L1 -148 6143 5893 438 274 0 0 chr3 13799892 13800005 -204237153 + L1MA7 LINE L1 6173 6285 -6 * 1107 267 44 0 chr3 13801187 13801528 -204235630 - L1M4b LINE L1 -5910 949 594 469 71 43 0 chr3 13801529 13801599 -204235559 + LTR5 LTR ERVK 1 73 -896 6498 82 11 2 chr3 13801599 13802447 -204234711 + LTR5 LTR ERVK 115 969 0 21056 62 2 3 chr3 13802447 13805165 -204231993 + HERVK LTR ERVK 1 2715 -4528 17519 43 2 1 chr3 13805143 13807339 -204229819 + HERVK LTR ERVK 4951 7147 -96 * 417 95 11 168 chr3 13807342 13807437 -204229721 + SVA Other Other 857 936 -450 7664 59 7 21 chr3 13807437 13808420 -204228738 + LTR5 LTR ERVK 1 969 0 259 234 0 0 chr3 13808480 13808544 -204228614 - Charlie5 DNA MER1_type -80 2532 2469 1863 173 29 0 chr3 13808579 13808921 -204228237 - MLT1A1 LTR MaLR -1 364 13 1924 154 0 0 chr3 13809108 13809407 -204227751 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr3 13809472 13809493 -204227665 + (GCCTG)n Simple_repeat Simple_repeat 5 25 0 2101 122 0 7 chr3 13809981 13810284 -204226874 + AluSx SINE Alu 1 301 -11 366 136 0 61 chr3 13810307 13810373 -204226785 + AluJb SINE Alu 21 82 -220 25 31 0 0 chr3 13810373 13810405 -204226753 + AT_rich Low_complexity Low_complexity 1 32 0 1281 142 40 36 chr3 13810410 13810635 -204226523 + AluJb SINE Alu 64 289 -23 2055 96 13 20 chr3 13810644 13810947 -204226211 + AluSx SINE Alu 1 301 -11 2023 32 4 4 chr3 13811170 13811417 -204225741 - AluY SINE Alu -1 310 64 2241 148 56 30 chr3 13811418 13811850 -204225308 - LTR8A LTR ERV1 -284 443 1 209 275 100 12 chr3 13812292 13812372 -204224786 + MIR3 SINE MIR 105 191 -17 180 333 17 0 chr3 13812697 13812757 -204224401 + MIR SINE MIR 50 110 -152 2009 98 0 4 chr3 13812894 13813171 -204223987 + AluSx SINE Alu 5 280 -32 207 0 0 0 chr3 13813171 13813194 -204223964 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 278 313 125 10 chr3 13813213 13813309 -204223849 + MIR SINE MIR 21 127 -135 611 284 169 31 chr3 13813318 13813709 -204223449 - L2 LINE L2 0 3313 2869 807 148 31 0 chr3 13814314 13814442 -204222716 + FLAM_C SINE Alu 2 133 0 1255 209 23 36 chr3 13814450 13814581 -204222577 + AluJo SINE Alu 7 138 -174 189 0 0 0 chr3 13814581 13814602 -204222556 + (CA)n Simple_repeat Simple_repeat 2 22 0 1255 209 23 36 chr3 13814602 13814771 -204222387 + AluJo SINE Alu 138 303 -9 208 233 50 17 chr3 13814771 13814831 -204222327 + MIR SINE MIR 105 166 -96 1750 117 4 4 chr3 13815939 13816195 -204220963 + AluSg SINE Alu 38 293 -17 2134 112 0 0 chr3 13816204 13816499 -204220659 + AluSx SINE Alu 1 295 -17 267 320 40 24 chr3 13816710 13816835 -204220323 - MLT1K LTR MaLR -393 195 69 411 287 16 42 chr3 13817139 13817316 -204219842 + MIR3 SINE MIR 28 201 -7 815 213 109 10 chr3 13817362 13817702 -204219456 - MLT1J2 LTR MaLR -19 427 1 452 281 134 6 chr3 13818106 13818270 -204218888 + MIR SINE MIR 19 203 -59 621 106 0 0 chr3 13818301 13818386 -204218772 + AluSg1 SINE Alu 21 105 -204 2328 97 0 0 chr3 13818419 13818730 -204218428 + AluSx SINE Alu 1 311 -1 2039 113 10 3 chr3 13818793 13819085 -204218073 + AluSx SINE Alu 1 294 -18 772 185 51 6 chr3 13820121 13820278 -204216880 + MIR SINE MIR 21 184 -78 1705 158 3 14 chr3 13820330 13820622 -204216536 - AluJo SINE Alu -16 296 8 2203 103 0 0 chr3 13820639 13820939 -204216219 - AluY SINE Alu -11 300 1 977 166 16 21 chr3 13821369 13821547 -204215611 - AluJb SINE Alu -1 311 133 2271 101 7 0 chr3 13821547 13821854 -204215304 - AluSg SINE Alu -1 309 1 977 166 16 21 chr3 13821854 13821868 -204215290 - AluJb SINE Alu -179 133 120 21 0 0 0 chr3 13821991 13822012 -204215146 + AT_rich Low_complexity Low_complexity 1 21 0 2327 91 3 0 chr3 13822134 13822442 -204214716 - AluSc SINE Alu 0 309 1 251 257 0 43 chr3 13822569 13822639 -204214519 + L2 LINE L2 3206 3272 0 297 271 0 0 chr3 13822643 13822713 -204214445 + L2 LINE L2 3203 3272 0 304 268 0 0 chr3 13822716 13822787 -204214371 + L2 LINE L2 3201 3271 -1 2199 116 0 0 chr3 13822800 13823101 -204214057 + AluSg SINE Alu 3 303 -7 198 286 0 32 chr3 13823116 13823179 -204213979 + L2 LINE L2 3205 3265 -7 2127 109 0 26 chr3 13823179 13823483 -204213675 + AluSx SINE Alu 1 296 -16 579 213 51 56 chr3 13824274 13824471 -204212687 + MIR SINE MIR 67 262 0 2203 64 0 58 chr3 13824553 13824866 -204212292 + AluY SINE Alu 1 295 -16 473 245 198 40 chr3 13824866 13825119 -204212039 - L2 LINE L2 -1 3312 3020 2216 90 0 3 chr3 13827003 13827303 -204209855 - AluSg1 SINE Alu -10 299 1 447 243 125 7 chr3 13827505 13827641 -204209517 - MIR SINE MIR -22 240 89 225 0 0 0 chr3 13827720 13827745 -204209413 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2120 71 0 14 chr3 13827748 13828028 -204209130 - AluY SINE Alu -35 276 1 453 307 39 20 chr3 13830141 13830294 -204206864 + MIR SINE MIR 8 163 -99 1576 271 175 17 chr3 13830541 13831446 -204205712 - L2 LINE L2 -68 3245 2196 365 196 0 72 chr3 13831624 13831721 -204205437 + MIR SINE MIR 103 192 -70 302 279 19 19 chr3 13831750 13831854 -204205304 + MIR3 SINE MIR 83 186 -22 224 218 55 0 chr3 13831886 13831941 -204205217 - L2 LINE L2 -29 3243 3186 337 237 0 41 chr3 13831960 13832071 -204205087 + L1MC4 LINE L1 1996 6983 -1339 3245 171 72 14 chr3 13832075 13832766 -204204392 - L1MB5 LINE L1 -9 6165 5435 458 212 145 45 chr3 13832767 13832946 -204204212 - MIR SINE MIR -57 205 9 265 248 106 44 chr3 13833287 13833400 -204203758 + MIR3 SINE MIR 54 173 -35 327 274 47 9 chr3 13833646 13833752 -204203406 + MIR SINE MIR 44 153 -55 2313 74 0 3 chr3 13834076 13834375 -204202783 + AluY SINE Alu 1 298 -13 1304 148 92 8 chr3 13834384 13834634 -204202524 + AluJo SINE Alu 10 280 -32 423 0 0 0 chr3 13834639 13834686 -204202472 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 356 271 75 28 chr3 13834696 13834803 -204202355 + L1ME4a LINE L1 5738 5849 -272 11187 45 6 11 chr3 13834830 13836223 -204200935 - SVA Other Other 0 1386 1 298 98 16 33 chr3 13836224 13836285 -204200873 + (GGGAGA)n Simple_repeat Simple_repeat 1 60 0 269 323 4 134 chr3 13836781 13837007 -204200151 - L2 LINE L2 -76 3196 3005 2505 62 0 0 chr3 13837007 13837315 -204199843 + AluY SINE Alu 1 308 -3 269 323 4 134 chr3 13837315 13837342 -204199816 - L2 LINE L2 -267 3005 2976 204 139 13 177 chr3 13837326 13837405 -204199753 + MIR3 SINE MIR 10 75 -133 * 816 236 26 141 chr3 13837405 13837481 -204199677 - MLT1J LTR MaLR 0 495 412 2127 105 0 20 chr3 13837481 13837787 -204199371 + AluSq SINE Alu 1 300 -13 816 236 26 141 chr3 13837787 13838214 -204198944 - MLT1J LTR MaLR -83 412 1 722 327 9 0 chr3 13839362 13839573 -204197585 - MIR SINE MIR -12 250 38 319 237 46 76 chr3 13839603 13839734 -204197424 + MIR SINE MIR 64 190 -72 345 309 103 25 chr3 13840661 13840888 -204196270 + MIR SINE MIR 16 262 0 2062 74 19 32 chr3 13841320 13841632 -204195526 - AluSg SINE Alu -2 308 1 371 277 234 0 chr3 13843570 13843707 -204193451 + MIR SINE MIR 94 262 0 188 256 0 0 chr3 13843740 13843783 -204193375 + MER5B DNA MER1_type 1 43 -135 988 163 28 0 chr3 13843826 13844004 -204193154 - AluJb SINE Alu -10 302 120 183 358 0 0 chr3 13844022 13844089 -204193069 - MIR SINE MIR -65 143 77 263 280 47 19 chr3 13845776 13845883 -204191275 + L2 LINE L2 2697 2806 -508 2183 110 0 0 chr3 13846009 13846299 -204190859 - AluSx SINE Alu -22 290 1 395 234 140 9 chr3 13846380 13846487 -204190671 + MIR SINE MIR 46 166 -96 183 292 14 14 chr3 13847025 13847097 -204190061 - L2 LINE L2 -1 3271 3200 330 213 32 32 chr3 13847263 13847357 -204189801 - MIR SINE MIR -119 143 50 243 61 0 0 chr3 13847640 13847673 -204189485 + (TCC)n Simple_repeat Simple_repeat 2 34 0 413 225 158 0 chr3 13848028 13848148 -204189010 - L3 LINE CR1 -16 1561 1423 374 293 61 59 chr3 13848182 13848265 -204188893 - L1ME4a LINE L1 -124 5997 5916 2009 69 87 0 chr3 13848265 13848540 -204188618 - AluSx SINE Alu -13 299 1 374 293 61 59 chr3 13848540 13848871 -204188287 - L1ME4a LINE L1 -205 5916 5576 1199 169 31 63 chr3 13848985 13849239 -204187919 + AluJb SINE Alu 1 246 -66 309 86 69 0 chr3 13849306 13849389 -204187769 + AluJb SINE Alu 241 327 0 1615 149 3 57 chr3 13849405 13849721 -204187437 + AluJo SINE Alu 13 311 -1 701 301 187 17 chr3 13849935 13850417 -204186741 - L3 LINE CR1 -291 1286 723 463 301 165 0 chr3 13851035 13851241 -204185917 - MIR SINE MIR -3 259 20 1018 114 0 0 chr3 13851262 13851394 -204185764 - AluSq/x SINE Alu -181 132 1 2192 124 0 0 chr3 13851940 13852239 -204184919 - AluSx SINE Alu -13 299 1 340 224 52 100 chr3 13852289 13852499 -204184659 - HAL1 LINE L1 -72 2435 2236 522 236 58 37 chr3 13852520 13852711 -204184447 - HAL1 LINE L1 -335 2172 1978 551 267 48 40 chr3 13852775 13853127 -204184031 + L1MC5 LINE L1 7428 7782 -179 2390 91 0 0 chr3 13853189 13853486 -204183672 + AluSx SINE Alu 1 297 -15 1681 165 21 18 chr3 13853531 13853816 -204183342 - AluJb SINE Alu -26 286 1 1820 154 14 11 chr3 13853826 13854112 -204183046 - AluJo SINE Alu -25 287 1 754 156 117 7 chr3 13854112 13854266 -204182892 - L1MB8 LINE L1 -347 5831 5661 1060 110 0 61 chr3 13854268 13854501 -204182657 - AluSc SINE Alu 0 309 4 2428 90 0 0 chr3 13854514 13854814 -204182344 - AluSg SINE Alu -10 300 1 636 136 18 36 chr3 13854816 13854926 -204182232 - L1MB8 LINE L1 -509 5669 5562 231 291 25 0 chr3 13854932 13855011 -204182147 - MIR SINE MIR -71 137 57 381 358 49 32 chr3 13855200 13855262 -204181896 + L2 LINE L2 2791 2850 -422 308 209 0 0 chr3 13855262 13855329 -204181829 - L1MB8 LINE L1 -9 6169 6103 381 358 49 32 chr3 13855329 13855550 -204181608 + L2 LINE L2 2850 3078 -194 1711 83 0 9 chr3 13855615 13855843 -204181315 - AluY SINE Alu -6 305 80 479 243 79 13 chr3 13856338 13856490 -204180668 + MLT1K LTR MaLR 419 580 -8 1304 107 122 0 chr3 13856683 13856888 -204180270 - MER30 DNA MER1_type 0 230 1 1773 79 0 0 chr3 13857162 13857377 -204179781 - AluSq SINE Alu -16 297 83 878 150 0 0 chr3 13857891 13858024 -204179134 + AluJo SINE Alu 1 133 -169 255 31 0 0 chr3 13858947 13858979 -204178179 + (TA)n Simple_repeat Simple_repeat 2 33 0 2261 100 0 13 chr3 13858979 13859280 -204177878 - AluSg1 SINE Alu -12 297 1 426 293 28 83 chr3 13859760 13860013 -204177145 - MIR SINE MIR -8 254 16 563 210 86 37 chr3 13860464 13860626 -204176532 + AluJo SINE Alu 140 309 -3 1620 156 0 50 chr3 13860637 13860920 -204176238 + AluJo SINE Alu 9 277 -35 341 0 45 0 chr3 13860921 13860965 -204176193 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2924 174 77 61 chr3 13861010 13861727 -204175431 - L1MB7 LINE L1 -17 6167 5440 2409 88 0 0 chr3 13861728 13862023 -204175135 - AluSg SINE Alu -15 295 1 1858 99 3 128 chr3 13862032 13862376 -204174782 - AluSg1 SINE Alu -8 301 1 1030 214 37 7 chr3 13862386 13862657 -204174501 - L1MB4 LINE L1 0 6180 5902 750 186 164 0 chr3 13862684 13862824 -204174334 - FRAM SINE Alu -19 157 1 4247 192 71 38 chr3 13862864 13863430 -204173728 - L1MB4 LINE L1 -1144 5002 4456 2274 106 0 0 chr3 13863430 13863722 -204173436 - AluSc SINE Alu -17 292 1 4247 192 71 38 chr3 13863722 13864146 -204173012 - L1MB4 LINE L1 -1690 4456 3974 2099 132 0 10 chr3 13864146 13864314 -204172844 - AluSx SINE Alu -11 301 136 2215 105 10 29 chr3 13864314 13864627 -204172531 - AluSq SINE Alu -6 307 1 2099 132 0 10 chr3 13864627 13864762 -204172396 - AluSx SINE Alu -176 136 1 4247 192 71 38 chr3 13864762 13864814 -204172344 - L1MB4 LINE L1 -2172 3974 3925 264 240 184 22 chr3 13865390 13865493 -204171665 + MIR SINE MIR 44 157 -94 498 278 57 44 chr3 13865541 13865768 -204171390 - MIR SINE MIR 0 262 33 2328 94 0 0 chr3 13866430 13866716 -204170442 - AluSx SINE Alu -17 295 10 198 0 0 0 chr3 13867965 13867987 -204169171 + (A)n Simple_repeat Simple_repeat 1 22 0 2061 115 20 10 chr3 13867991 13868287 -204168871 + AluSx SINE Alu 1 299 -13 2362 76 14 0 chr3 13868335 13868626 -204168532 - AluY SINE Alu -16 295 1 211 0 28 56 chr3 13868678 13868714 -204168444 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2334 68 0 0 chr3 13868716 13868996 -204168162 - AluY SINE Alu -31 280 1 632 137 0 0 chr3 13868998 13869093 -204168065 - AluJo/FLAM SINE Alu -183 129 35 2462 62 0 0 chr3 13870070 13870359 -204166799 - AluY SINE Alu -21 290 2 2399 98 0 13 chr3 13870360 13870667 -204166491 - AluSx SINE Alu -9 303 1 701 263 106 59 chr3 13870668 13871033 -204166125 - L1ME LINE L1 -297 5824 5435 2412 82 0 3 chr3 13871033 13871339 -204165819 + AluY SINE Alu 1 305 -6 701 263 106 59 chr3 13871339 13871399 -204165759 - L1ME LINE L1 -686 5435 5379 2056 129 7 13 chr3 13871608 13871911 -204165247 - AluSx SINE Alu -11 301 1 1650 150 6 72 chr3 13873531 13873851 -204163307 + AluJo SINE Alu 1 299 -13 2134 100 25 4 chr3 13874050 13874331 -204162827 + AluSg SINE Alu 1 287 -23 197 33 33 0 chr3 13874338 13874368 -204162790 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 318 130 0 0 chr3 13874721 13874775 -204162383 + MER5C DNA MER1_type 71 124 -200 432 115 0 73 chr3 13874805 13874901 -204162257 + MER5C DNA MER1_type 236 324 0 482 285 22 0 chr3 13874902 13875039 -204162119 + MIR SINE MIR 4 143 -119 208 248 183 29 chr3 13875046 13875183 -204161975 - L2 LINE L2 0 3313 3156 2261 120 0 0 chr3 13875515 13875814 -204161344 - AluSx SINE Alu -13 299 1 1865 148 0 69 chr3 13875869 13876187 -204160971 - AluJb SINE Alu -16 296 1 239 281 91 16 chr3 13876276 13876397 -204160761 + L2 LINE L2 3160 3289 -24 1609 119 9 133 chr3 13876412 13876757 -204160401 + AluJo SINE Alu 1 302 -10 207 0 0 0 chr3 13877089 13877112 -204160046 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 824 164 0 0 chr3 13877112 13877234 -204159924 - AluJb SINE Alu -190 122 1 2120 107 3 17 chr3 13877449 13877747 -204159411 - AluSx SINE Alu -16 296 3 2106 109 3 7 chr3 13877759 13878053 -204159105 - AluSg SINE Alu -17 293 1 1766 173 10 7 chr3 13878114 13878409 -204158749 + AluJb SINE Alu 10 305 -7 1922 164 0 0 chr3 13878649 13878947 -204158211 - AluSx SINE Alu -14 298 1 1214 129 16 5 chr3 13878996 13879182 -204157976 + AluSg/x SINE Alu 107 294 -18 188 305 142 21 chr3 13879351 13879492 -204157666 + MIR SINE MIR 35 192 -70 2518 67 0 10 chr3 13879580 13879879 -204157279 - AluSc SINE Alu -13 296 1 2397 80 0 7 chr3 13879890 13880190 -204156968 - AluY SINE Alu -13 298 1 314 265 120 8 chr3 13880405 13880522 -204156636 + MIR SINE MIR 117 246 -16 1162 228 100 6 chr3 13880567 13880927 -204156231 + MER113 DNA MER1_type? 2 395 -126 456 139 163 0 chr3 13880932 13881018 -204156140 - FLAM_A SINE Alu -15 127 28 2161 99 7 0 chr3 13881113 13881429 -204155729 + AluSq SINE Alu 1 318 0 458 292 109 10 chr3 13881745 13881937 -204155221 - MIR SINE MIR -14 248 38 2375 69 7 3 chr3 13882435 13882741 -204154417 + AluY SINE Alu 3 309 -2 372 88 0 27 chr3 13884768 13884983 -204152175 + AluSx SINE Alu 1 293 -8 24 0 0 0 chr3 13885258 13885282 -204151876 + AT_rich Low_complexity Low_complexity 1 24 0 224 241 0 0 chr3 13885424 13885478 -204151680 + T-rich Low_complexity Low_complexity 1 54 0 254 105 53 0 chr3 13885478 13885516 -204151642 - LTR23 LTR ERV1 -78 359 320 2293 91 24 0 chr3 13885521 13885819 -204151339 - AluYb8 SINE Alu -13 305 1 1067 184 46 9 chr3 13885820 13886005 -204151153 - AluJo SINE Alu 0 312 116 180 0 0 0 chr3 13886005 13886025 -204151133 + (TTAG)n Simple_repeat Simple_repeat 2 21 0 1067 184 46 9 chr3 13886025 13886057 -204151101 - AluJo SINE Alu -196 116 87 357 194 0 0 chr3 13886059 13886121 -204151037 - AluSc SINE Alu -51 248 187 254 105 53 0 chr3 13886147 13886185 -204150973 - LTR23 LTR ERV1 -78 359 320 2293 91 24 0 chr3 13886190 13886488 -204150670 - AluYb8 SINE Alu -13 305 1 1745 176 0 52 chr3 13886489 13886674 -204150484 - AluJo SINE Alu 0 312 119 180 0 0 0 chr3 13886674 13886694 -204150464 + (TTAG)n Simple_repeat Simple_repeat 2 21 0 1998 115 14 14 chr3 13886694 13886981 -204150177 - AluSq SINE Alu -26 287 1 2442 46 7 0 chr3 13886987 13887296 -204149862 - AluY SINE Alu 0 311 1 1745 176 0 52 chr3 13887296 13887430 -204149728 - AluJo SINE Alu -197 115 1 805 153 21 7 chr3 13887703 13887847 -204149311 - FRAM SINE Alu -30 146 1 2063 133 42 21 chr3 13887928 13888258 -204148900 - MER1B DNA MER1_type 0 337 1 1925 131 0 55 chr3 13888265 13888594 -204148564 - AluSx SINE Alu -1 311 1 420 310 80 9 chr3 13889197 13889410 -204147748 - L3 LINE CR1 -726 851 624 2221 112 0 3 chr3 13890744 13891040 -204146118 - AluSq SINE Alu -18 295 1 1175 133 0 6 chr3 13891817 13891990 -204145168 - AluSg/x SINE Alu -24 288 117 206 191 85 0 chr3 13892104 13892151 -204145007 - L2 LINE L2 -1 3271 3221 1896 139 0 20 chr3 13892352 13892647 -204144511 + AluJb SINE Alu 23 311 -1 24 0 0 0 chr3 13892794 13892818 -204144340 + AT_rich Low_complexity Low_complexity 1 24 0 1518 161 38 3 chr3 13893100 13893391 -204143767 - L1MB4 LINE L1 -21 6159 5859 1015 83 0 0 chr3 13893406 13893538 -204143620 - AluY SINE Alu -179 132 1 1941 154 39 23 chr3 13893538 13893616 -204143542 - L1MB4 LINE L1 -308 5872 5797 2097 113 0 0 chr3 13893616 13893928 -204143230 - AluSx SINE Alu 0 312 1 1941 154 39 23 chr3 13893928 13894237 -204142921 - L1MB4 LINE L1 -383 5797 5478 2367 71 0 0 chr3 13894251 13894575 -204142583 + AluY SINE Alu 1 324 0 935 171 0 6 chr3 13894602 13894760 -204142398 - FRAM SINE Alu -19 157 1 1127 157 48 56 chr3 13894764 13894919 -204142239 - L1MB4 LINE L1 -699 5481 5326 1525 229 0 3 chr3 13894919 13895224 -204141934 - AluJb SINE Alu -8 304 1 1127 157 48 56 chr3 13895224 13895405 -204141753 - L1MB4 LINE L1 -854 5326 5148 2113 133 3 0 chr3 13895405 13895705 -204141453 - AluSc SINE Alu -8 301 1 1127 157 48 56 chr3 13895705 13895748 -204141410 - L1MB4 LINE L1 -1032 5148 5106 2190 94 10 29 chr3 13896198 13896506 -204140652 - AluSx SINE Alu -10 302 1 2284 187 77 66 chr3 13897186 13897446 -204139712 - L1MB4 LINE L1 -1015 5131 4875 2377 62 0 55 chr3 13897446 13897755 -204139403 + AluY SINE Alu 1 292 -19 2284 187 77 66 chr3 13897755 13897882 -204139276 - L1MB4 LINE L1 -1271 4875 4751 2215 103 0 7 chr3 13897882 13898172 -204138986 + AluY SINE Alu 1 288 -23 2284 187 77 66 chr3 13898172 13898436 -204138722 - L1MB4 LINE L1 -1395 4751 4472 1707 188 11 0 chr3 13898437 13898752 -204138406 - AluJb SINE Alu 0 312 1 259 182 15 30 chr3 13899615 13899681 -204137477 + AluS SINE Alu 5 69 -234 224 30 30 0 chr3 13899805 13899838 -204137320 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 240 143 0 0 chr3 13899866 13899908 -204137250 + (GGGAGA)n Simple_repeat Simple_repeat 1 42 0 181 425 0 0 chr3 13900410 13900490 -204136668 - L2 LINE L2 -82 3190 3111 227 223 11 106 chr3 13900564 13900630 -204136528 - L2 LINE L2 -212 3060 3004 2622 62 0 0 chr3 13900630 13900938 -204136220 + AluY SINE Alu 1 308 -3 227 223 11 106 chr3 13900938 13900965 -204136193 - L2 LINE L2 -268 3004 2976 190 139 13 177 chr3 13900949 13901028 -204136130 + MIR3 SINE MIR 10 75 -133 * 2031 105 4 10 chr3 13901104 13901392 -204135766 + AluSx SINE Alu 1 283 -29 316 0 0 0 chr3 13901392 13901427 -204135731 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 25 0 0 0 chr3 13901482 13901507 -204135651 + AT_rich Low_complexity Low_complexity 1 25 0 1099 137 137 19 chr3 13901803 13901964 -204135194 - MER46A DNA MER2_type -2495 236 43 2187 138 0 0 chr3 13901964 13902261 -204134897 - AluSx SINE Alu -15 297 1 1099 137 137 19 chr3 13902261 13902310 -204134848 - MER46A DNA MER2_type -2688 43 1 498 290 134 28 chr3 13902320 13902537 -204134621 - MIR SINE MIR -3 259 20 2197 116 0 0 chr3 13902951 13903243 -204133915 - AluSq SINE Alu -21 292 1 617 247 19 6 chr3 13903243 13903405 -204133753 + MER113 DNA MER1_type? 189 352 -169 2553 93 0 0 chr3 13903447 13903759 -204133399 + AluSx SINE Alu 1 312 0 2467 83 3 10 chr3 13904477 13904789 -204132369 + AluSg SINE Alu 1 310 0 2645 44 0 0 chr3 13904897 13905193 -204131965 - AluY SINE Alu -15 296 1 1774 89 46 19 chr3 13905193 13905452 -204131706 - AluSq SINE Alu -13 300 35 2086 50 0 0 chr3 13905463 13905701 -204131457 - AluY SINE Alu -73 238 1 538 314 115 24 chr3 13905764 13906095 -204131063 - L3 LINE CR1 -72 1505 1145 574 264 120 37 chr3 13907367 13907583 -204129575 + MIR SINE MIR 9 242 -20 436 303 86 0 chr3 13907754 13907916 -204129242 - MIR SINE MIR -56 206 31 385 307 54 31 chr3 13907942 13908222 -204128936 - MER102b DNA MER1_type 0 341 1 207 69 0 0 chr3 13909027 13909056 -204128102 + (T)n Simple_repeat Simple_repeat 1 29 0 247 301 97 44 chr3 13909864 13909977 -204127181 - MIR3 SINE MIR -24 184 66 578 193 38 80 chr3 13909988 13910200 -204126958 - MER3 DNA MER1_type -5 204 2 326 282 113 8 chr3 13910234 13910358 -204126800 + MIR SINE MIR 41 177 -85 1960 141 10 13 chr3 13910717 13911023 -204126135 + AluSq SINE Alu 1 305 -8 1953 84 95 7 chr3 13911033 13911318 -204125840 + AluSx SINE Alu 2 311 -1 389 273 72 21 chr3 13911355 13911922 -204125236 + L1MC4 LINE L1 7098 7629 -413 2247 93 3 0 chr3 13912003 13912293 -204124865 + AluY SINE Alu 1 291 -20 258 287 25 82 chr3 13912296 13912418 -204124740 + MER5B DNA MER1_type 35 149 -29 753 177 87 113 chr3 13912896 13912961 -204124197 - MIR SINE MIR 0 262 197 2382 95 0 0 chr3 13912961 13913256 -204123902 + AluSx SINE Alu 1 295 -17 753 177 87 113 chr3 13913256 13913455 -204123703 - MIR SINE MIR -65 197 5 453 238 165 61 chr3 13913478 13913642 -204123516 - MIR SINE MIR -60 202 22 433 259 122 27 chr3 13914432 13914579 -204122579 + MIR SINE MIR 6 166 -96 232 275 125 0 chr3 13914627 13914707 -204122451 + MIR SINE MIR 169 258 -4 360 308 19 0 chr3 13914715 13914822 -204122336 - MIR SINE MIR -108 154 46 2379 102 0 0 chr3 13914941 13915244 -204121914 - AluSx SINE Alu -9 303 1 610 234 48 30 chr3 13915247 13915414 -204121744 + L2 LINE L2 3135 3304 -9 1591 155 26 37 chr3 13915428 13915699 -204121459 + AluJb SINE Alu 24 291 -21 2311 97 24 0 chr3 13916355 13916653 -204120505 - AluSx SINE Alu -7 305 1 758 238 48 29 chr3 13916898 13917104 -204120054 - MIR SINE MIR -51 211 2 343 202 27 209 chr3 13917635 13917749 -204119409 - MIR SINE MIR -17 245 112 1723 165 53 3 chr3 13917749 13918034 -204119124 - AluJo SINE Alu -13 299 1 343 202 27 209 chr3 13918034 13918063 -204119095 - MIR SINE MIR -150 112 79 2506 90 0 0 chr3 13918063 13918375 -204118783 + AluSx SINE Alu 1 312 0 343 202 27 209 chr3 13918375 13918395 -204118763 - MIR SINE MIR -183 79 57 2177 124 0 3 chr3 13918395 13918694 -204118464 + AluSc SINE Alu 1 298 -11 343 202 27 209 chr3 13918694 13918786 -204118372 - MIR SINE MIR -205 57 35 574 254 101 32 chr3 13918876 13919093 -204118065 + L2 LINE L2 3081 3312 -1 189 0 0 0 chr3 13919680 13919701 -204117457 + (A)n Simple_repeat Simple_repeat 1 21 0 2491 58 7 3 chr3 13919708 13920002 -204117156 - AluY SINE Alu -16 295 1 1073 92 0 0 chr3 13920004 13920135 -204117023 - AluSg SINE Alu -174 136 6 5605 164 17 4 chr3 13920376 13922026 -204115132 - L1PB1 LINE L1 -7 6144 4477 1111 122 0 0 chr3 13922029 13922185 -204114973 - AluSg/x SINE Alu 0 312 157 427 153 0 0 chr3 13922191 13922250 -204114908 - AluS SINE Alu -256 62 4 2298 106 0 3 chr3 13922263 13922564 -204114594 - AluSg SINE Alu -10 300 1 598 136 18 36 chr3 13922566 13922676 -204114482 - L1M4 LINE L1 -509 5669 5562 305 333 54 0 chr3 13922682 13922811 -204114347 - MIR3 SINE MIR -71 137 2 296 232 0 12 chr3 13923012 13923094 -204114064 - L1MB8 LINE L1 -9 6169 6089 438 322 181 43 chr3 13923096 13923365 -204113793 + L2 LINE L2 2868 3195 -77 1731 83 0 9 chr3 13923365 13923593 -204113565 - AluY SINE Alu -6 305 80 438 322 181 43 chr3 13923593 13923678 -204113480 + L2 LINE L2 3195 3267 -5 444 243 79 13 chr3 13924088 13924240 -204112918 + MLT1K LTR MaLR 419 580 -8 1316 107 122 0 chr3 13924433 13924638 -204112520 - MER30 DNA MER1_type 0 230 1 1789 79 0 0 chr3 13924912 13925127 -204112031 - AluSq SINE Alu -16 297 83 188 240 0 20 chr3 13925346 13925396 -204111762 + L2 LINE L2 2931 2979 -334 899 150 0 0 chr3 13925641 13925774 -204111384 + AluJo SINE Alu 1 133 -169 219 36 0 0 chr3 13926699 13926727 -204110431 + (TA)n Simple_repeat Simple_repeat 2 29 0 2245 101 0 14 chr3 13926727 13927024 -204110134 - AluSg1 SINE Alu -16 293 1 534 293 28 83 chr3 13927504 13927757 -204109401 - MIR SINE MIR -8 254 16 584 254 67 6 chr3 13928206 13928371 -204108787 + AluJo SINE Alu 137 311 -1 1645 156 0 50 chr3 13928382 13928665 -204108493 + AluJo SINE Alu 9 277 -35 486 0 0 0 chr3 13928666 13928720 -204108438 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2697 179 74 59 chr3 13928765 13929482 -204107676 - L1MB7 LINE L1 -17 6167 5440 2425 88 0 0 chr3 13929483 13929778 -204107380 - AluSg SINE Alu -15 295 1 1927 87 3 130 chr3 13929787 13930132 -204107026 - AluSg1 SINE Alu -8 301 1 396 256 234 0 chr3 13932072 13932209 -204104949 + MIR SINE MIR 94 262 0 184 283 57 0 chr3 13932242 13932295 -204104863 - MER5B DNA MER1_type 0 178 123 502 232 10 0 chr3 13932685 13932784 -204104374 + FLAM_A SINE Alu 1 100 -42 27 0 0 0 chr3 13932819 13932846 -204104312 + AT_rich Low_complexity Low_complexity 1 27 0 1645 156 0 50 chr3 13932857 13933140 -204104018 + AluJo SINE Alu 9 277 -35 414 0 0 0 chr3 13933141 13933187 -204103971 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2697 179 74 59 chr3 13933232 13933949 -204103209 - L1MB7 LINE L1 -17 6167 5440 2371 95 0 0 chr3 13933951 13934245 -204102913 - AluSg SINE Alu -16 294 1 564 96 0 36 chr3 13934269 13934352 -204102806 - AluSg/x SINE Alu -23 289 210 1855 118 8 0 chr3 13934352 13934598 -204102560 - AluSx SINE Alu -64 248 1 959 214 37 7 chr3 13934608 13934879 -204102279 - L1MB4 LINE L1 0 6180 5902 778 186 164 0 chr3 13934906 13935046 -204102112 - FRAM SINE Alu -19 157 1 4002 197 71 38 chr3 13935086 13935652 -204101506 - L1MB4 LINE L1 -1144 5002 4456 2292 106 0 0 chr3 13935652 13935944 -204101214 - AluSc SINE Alu -17 292 1 4002 197 71 38 chr3 13935944 13936368 -204100790 - L1MB4 LINE L1 -1690 4456 3974 2126 132 0 10 chr3 13936368 13936536 -204100622 - AluSx SINE Alu -11 301 136 2242 105 10 29 chr3 13936536 13936849 -204100309 - AluSq SINE Alu -6 307 1 2126 132 0 10 chr3 13936849 13936984 -204100174 - AluSx SINE Alu -176 136 1 4002 197 71 38 chr3 13936984 13937036 -204100122 - L1MB4 LINE L1 -2172 3974 3925 302 313 188 0 chr3 13937603 13937715 -204099443 + MIR SINE MIR 25 157 -105 587 278 57 44 chr3 13937763 13937990 -204099168 - MIR SINE MIR 0 262 33 2346 94 0 0 chr3 13938652 13938938 -204098220 - AluSx SINE Alu -17 295 10 198 0 0 0 chr3 13940187 13940209 -204096949 + (A)n Simple_repeat Simple_repeat 1 22 0 1406 150 5 0 chr3 13940213 13940426 -204096732 + AluSx SINE Alu 1 214 -98 2498 59 0 0 chr3 13940492 13940781 -204096377 + AluY SINE Alu 2 290 -21 648 137 0 0 chr3 13941758 13941853 -204095305 + AluJo/FLAM SINE Alu 35 129 -183 2336 68 0 0 chr3 13941855 13942173 -204094985 + AluY SINE Alu 1 318 0 352 266 13 0 chr3 13942633 13942712 -204094446 - MER5A DNA MER1_type -92 97 18 206 196 0 71 chr3 13942757 13942813 -204094345 + MIR SINE MIR 102 153 -55 486 332 67 5 chr3 13942880 13943073 -204094085 + MIR SINE MIR 20 224 -38 495 223 192 8 chr3 13943108 13943238 -204093920 + MER5A DNA MER1_type 30 183 -6 757 187 9 98 chr3 13943901 13944024 -204093134 + MER3 DNA MER1_type 7 105 -104 2113 85 22 63 chr3 13944024 13944340 -204092818 - AluSq SINE Alu -9 304 2 757 187 9 98 chr3 13944340 13944430 -204092728 + MER3 DNA MER1_type 105 201 -8 189 295 70 78 chr3 13944516 13944645 -204092513 + L2 LINE L2 2933 3060 -212 457 272 103 11 chr3 13945323 13945507 -204091651 + MIR SINE MIR 7 207 -55 1039 171 114 100 chr3 13945507 13945788 -204091370 + AluJo SINE Alu 5 289 -13 339 92 69 0 chr3 13945788 13945875 -204091283 + (TA)n Simple_repeat Simple_repeat 1 93 0 1191 162 0 0 chr3 13945878 13946051 -204091107 + AluSg/x SINE Alu 125 297 -13 2429 88 0 13 chr3 13946209 13946517 -204090641 + AluSg1 SINE Alu 1 304 -5 1192 228 91 47 chr3 13947139 13947569 -204089589 + L2 LINE L2 2845 3293 -20 192 164 0 49 chr3 13947591 13947652 -204089506 + GA-rich Low_complexity Low_complexity 1 58 0 566 290 65 9 chr3 13948256 13948470 -204088688 - MIR SINE MIR -18 244 19 236 232 29 94 chr3 13948492 13948600 -204088558 + L1ME4a LINE L1 5992 6091 -30 1931 115 38 54 chr3 13948600 13948914 -204088244 - AluSq SINE Alu -4 309 1 236 232 29 94 chr3 13948914 13948943 -204088215 + L1ME4a LINE L1 6091 6120 -1 233 266 16 0 chr3 13949038 13949102 -204088056 - MIR SINE MIR -119 143 79 1085 152 11 43 chr3 13949488 13949672 -204087486 + FAM SINE Alu 1 42 -7 2241 120 0 0 chr3 13949953 13950244 -204086914 + AluSq SINE Alu 1 291 -22 354 259 46 56 chr3 13950252 13950360 -204086798 + L2 LINE L2 3117 3223 -49 767 221 7 0 chr3 13950380 13950525 -204086633 + MIR SINE MIR 105 250 -12 2177 108 3 54 chr3 13950544 13950860 -204086298 - AluSp SINE Alu -12 301 2 2244 90 33 20 chr3 13950867 13951168 -204085990 - AluSq SINE Alu -2 311 7 754 177 8 0 chr3 13951665 13951789 -204085369 - FLAM_C SINE Alu -6 127 3 1664 168 14 50 chr3 13951799 13952025 -204085133 - L1MB7 LINE L1 -358 5826 5616 1733 180 3 26 chr3 13952025 13952330 -204084828 - AluJo SINE Alu -6 306 9 1664 168 14 50 chr3 13952330 13952466 -204084692 - L1MB7 LINE L1 -568 5616 5477 2232 116 3 3 chr3 13952478 13952781 -204084377 - AluSp SINE Alu -10 303 1 875 144 0 27 chr3 13952818 13952964 -204084194 - FLAM_C SINE Alu -1 142 1 939 154 46 36 chr3 13952989 13953033 -204084125 - L1MB7 LINE L1 -739 5435 5393 1913 174 0 3 chr3 13953033 13953326 -204083832 - AluJb SINE Alu -20 292 1 939 154 46 36 chr3 13953326 13953557 -204083601 - L1MB7 LINE L1 -781 5393 5162 2189 117 0 3 chr3 13953557 13953848 -204083310 + AluSx SINE Alu 1 290 -22 939 154 46 36 chr3 13953848 13953905 -204083253 - L1MB7 LINE L1 -1012 5162 5107 540 193 107 7 chr3 13953914 13954097 -204083061 - L1 LINE L1 -961 5185 4981 2423 52 3 43 chr3 13954181 13954486 -204082672 + AluY SINE Alu 1 293 -18 186 327 144 0 chr3 13954536 13954640 -204082518 + MIR SINE MIR 119 237 -25 1033 176 176 8 chr3 13954764 13955009 -204082149 + L1MC4 LINE L1 6725 7010 -1032 204 40 0 0 chr3 13955060 13955085 -204082073 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1712 165 18 18 chr3 13955085 13955399 -204081759 + AluJo SINE Alu 1 314 0 341 241 181 23 chr3 13955414 13955547 -204081611 + L1MC4 LINE L1 7247 7400 -642 1986 142 3 0 chr3 13955584 13955872 -204081286 - AluSx SINE Alu -23 289 1 571 206 0 30 chr3 13956268 13956399 -204080759 - FLAM_A SINE Alu -6 127 1 2009 149 3 0 chr3 13957177 13957479 -204079679 + AluSx SINE Alu 1 303 -9 2179 134 0 6 chr3 13957484 13957798 -204079360 + AluSx SINE Alu 1 312 0 340 271 143 15 chr3 13958222 13958387 -204078771 + MIR SINE MIR 10 189 -53 682 221 30 43 chr3 13958539 13958648 -204078510 + LTR37A LTR ERV1 139 248 -178 1295 191 47 85 chr3 13958648 13958967 -204078191 - AluJo SINE Alu -5 307 1 682 221 30 43 chr3 13958967 13959088 -204078070 + LTR37A LTR ERV1 248 366 -60 2118 137 10 0 chr3 13959089 13959388 -204077770 - AluSx SINE Alu -10 302 1 549 168 0 0 chr3 13960361 13960468 -204076690 - L1MB7 LINE L1 -16 6168 6062 1596 145 0 0 chr3 13960548 13960776 -204076382 - AluSc SINE Alu -81 228 1 1677 159 35 14 chr3 13960778 13961068 -204076090 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 13961231 13961254 -204075904 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 13961883 13961944 -204075214 + MER20 DNA MER1_type 3 65 -154 448 213 176 15 chr3 13961987 13962123 -204075035 + MER20 DNA MER1_type 57 214 -5 218 307 139 0 chr3 13962163 13962264 -204074894 - L2 LINE L2 0 3272 3158 2535 78 0 0 chr3 13962405 13962711 -204074447 - AluY SINE Alu -5 306 1 2214 106 0 3 chr3 13962967 13963259 -204073899 - AluSx SINE Alu -21 291 1 2194 141 0 0 chr3 13963259 13963557 -204073601 - AluSx SINE Alu -14 298 1 293 275 42 49 chr3 13963568 13963710 -204073448 + L2 LINE L2 3171 3311 -2 329 43 0 0 chr3 13963905 13963951 -204073207 + AluY SINE Alu 255 300 -1 2304 122 0 0 chr3 13964098 13964401 -204072757 - AluSg SINE Alu -7 303 1 2630 65 0 0 chr3 13964410 13964719 -204072439 - AluY SINE Alu -2 309 1 706 233 12 81 chr3 13965465 13965723 -204071435 - L1MA7 LINE L1 -159 6132 5893 432 274 0 0 chr3 13965721 13965834 -204071324 + L1MA7 LINE L1 6173 6285 -6 * 1054 267 44 0 chr3 13967016 13967357 -204069801 - L1M4b LINE L1 -5910 949 594 438 71 43 0 chr3 13967358 13967428 -204069730 + LTR5 LTR ERVK 1 73 -896 6839 82 11 2 chr3 13967428 13968276 -204068882 + LTR5 LTR ERVK 115 969 0 20502 69 2 4 chr3 13968276 13970972 -204066186 + HERVK LTR ERVK 1 2691 -4552 1218 199 8 13 chr3 13971006 13971242 -204065916 + AluJb SINE Alu 58 292 -20 312 93 0 0 chr3 13971243 13971286 -204065872 + L1MB7 LINE L1 5390 5432 -734 875 144 0 27 chr3 13971311 13971457 -204065701 + FLAM_C SINE Alu 1 142 -1 2201 122 3 3 chr3 13971494 13971797 -204065361 + AluSp SINE Alu 1 303 -10 1666 168 14 50 chr3 13971809 13971945 -204065213 + L1MB7 LINE L1 5477 5616 -568 1729 180 3 26 chr3 13971945 13972250 -204064908 + AluJo SINE Alu 9 306 -6 1666 168 14 50 chr3 13972250 13972476 -204064682 + L1MB7 LINE L1 5616 5826 -358 1476 186 4 8 chr3 13972486 13972738 -204064420 + AluJo SINE Alu 3 253 -59 581 159 0 0 chr3 13972794 13972901 -204064257 + L1MB7 LINE L1 6062 6168 -16 2118 137 10 0 chr3 13973874 13974173 -204062985 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 13974174 13974295 -204062863 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 13974295 13974614 -204062544 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 13974614 13974723 -204062435 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 13974875 13975040 -204062118 - MIR SINE MIR -53 155 10 2179 134 0 6 chr3 13975464 13975778 -204061380 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 13975783 13976085 -204061073 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 13976863 13976994 -204060164 + FLAM_A SINE Alu 1 127 -6 2172 125 3 0 chr3 13977390 13977687 -204059471 + AluSx SINE Alu 1 298 -14 1858 135 24 17 chr3 13977753 13978049 -204059109 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 13978071 13978384 -204058774 + AluSg SINE Alu 1 310 0 2569 54 0 0 chr3 13979280 13979574 -204057584 - AluY SINE Alu -17 294 1 200 265 36 48 chr3 13981230 13981313 -204055845 - L2 LINE L2 -208 3105 3024 1967 132 51 0 chr3 13982247 13982543 -204054615 + AluSx SINE Alu 1 311 -1 1094 69 0 0 chr3 13982545 13982675 -204054483 + AluY SINE Alu 3 132 -179 270 257 101 9 chr3 13983962 13984071 -204053087 - L2 LINE L2 -171 3142 3024 2325 122 6 0 chr3 13984082 13984435 -204052723 - THE1A LTR MaLR 0 355 1 2132 124 3 22 chr3 13985157 13985471 -204051687 + AluSx SINE Alu 1 308 -4 2304 122 0 0 chr3 13985611 13985914 -204051244 - AluSg SINE Alu -7 303 1 2641 62 0 0 chr3 13985923 13986232 -204050926 - AluY SINE Alu -2 309 1 1197 178 82 10 chr3 13986232 13986535 -204050623 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 13986539 13986583 -204050575 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 13986594 13986724 -204050434 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 13986862 13986904 -204050254 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2347 101 0 3 chr3 13986961 13987267 -204049891 - AluSg SINE Alu -3 307 3 2484 86 0 3 chr3 13987269 13987573 -204049585 - AluSc SINE Alu -6 303 1 1677 159 35 14 chr3 13987575 13987865 -204049293 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 13988028 13988051 -204049107 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 13988680 13988741 -204048417 + MER20 DNA MER1_type 3 65 -154 236 207 138 58 chr3 13988784 13988871 -204048287 + MER20 DNA MER1_type 57 150 -69 191 289 156 0 chr3 13988970 13989060 -204048098 - L2 LINE L2 -11 3261 3158 2508 79 0 0 chr3 13989203 13989506 -204047652 - AluY SINE Alu -8 303 1 267 252 176 15 chr3 13989539 13989670 -204047488 + L2 LINE L2 2872 3023 -249 271 339 11 23 chr3 13990118 13990295 -204046863 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 415 236 286 0 chr3 13990554 13990694 -204046464 - MER5A DNA MER1_type -6 183 4 338 240 113 53 chr3 13990696 13990785 -204046373 - MIR SINE MIR -17 245 142 2428 71 7 3 chr3 13990785 13991080 -204046078 + AluSp SINE Alu 1 296 -17 338 240 113 53 chr3 13991080 13991140 -204046018 - MIR SINE MIR -120 142 87 261 0 0 0 chr3 13992886 13992915 -204044243 + (T)n Simple_repeat Simple_repeat 1 29 0 799 267 30 13 chr3 13992921 13993153 -204044005 - MIR SINE MIR -18 244 9 372 336 0 0 chr3 13993162 13993299 -204043859 + (TCTA)n Simple_repeat Simple_repeat 4 140 0 358 320 17 22 chr3 13993275 13993453 -204043705 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 * 2452 53 0 7 chr3 13993457 13993765 -204043393 - AluY SINE Alu 0 306 1 200 135 0 58 chr3 13993858 13993910 -204043248 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 309 320 27 0 chr3 13993949 13994283 -204042875 + (TCCA)n Simple_repeat Simple_repeat 1 343 0 396 292 41 10 chr3 13995247 13995395 -204041763 + MIR SINE MIR 45 193 -63 257 164 179 30 chr3 13995864 13995931 -204041227 + MIR SINE MIR 17 93 -115 687 169 12 31 chr3 13995948 13996108 -204041050 - AluY SINE Alu -91 220 64 2208 146 56 30 chr3 13996109 13996541 -204040617 - LTR8A LTR ERV1 -284 443 1 201 263 105 13 chr3 13996987 13997063 -204040095 + MIR3 SINE MIR 109 191 -17 2130 98 0 4 chr3 13997585 13997862 -204039296 + AluSx SINE Alu 5 280 -32 207 0 0 0 chr3 13997862 13997885 -204039273 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 273 313 125 10 chr3 13997904 13998000 -204039158 + MIR SINE MIR 21 127 -135 599 261 186 36 chr3 13998013 13998400 -204038758 - L2 LINE L2 0 3313 2869 758 148 31 0 chr3 13999006 13999134 -204038024 + FLAM_C SINE Alu 2 133 0 1397 203 23 36 chr3 13999142 13999273 -204037885 + AluJo SINE Alu 7 138 -174 189 0 0 0 chr3 13999273 13999294 -204037864 + (CA)n Simple_repeat Simple_repeat 2 22 0 1397 203 23 36 chr3 13999294 13999463 -204037695 + AluJo SINE Alu 138 303 -9 208 233 50 17 chr3 13999463 13999523 -204037635 + MIR SINE MIR 105 166 -96 1884 113 4 4 chr3 14000630 14000886 -204036272 + AluSg SINE Alu 38 293 -17 2267 112 0 0 chr3 14000895 14001190 -204035968 + AluSx SINE Alu 1 295 -17 402 292 15 8 chr3 14001877 14002007 -204035151 + MIR3 SINE MIR 71 201 -7 793 213 109 10 chr3 14002053 14002393 -204034765 - MLT1J2 LTR MaLR -19 427 1 471 281 134 6 chr3 14002797 14002961 -204034197 + MIR SINE MIR 19 203 -59 1927 119 8 4 chr3 14002992 14003260 -204033898 + AluJb SINE Alu 21 289 -23 358 241 181 23 chr3 14003297 14003430 -204033728 - L1MC4 LINE L1 -642 7400 7247 262 0 0 0 chr3 14003445 14003474 -204033684 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1700 165 18 18 chr3 14003474 14003759 -204033399 - AluJo SINE Alu -1 313 1 204 40 0 0 chr3 14003759 14003784 -204033374 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1013 176 176 8 chr3 14003835 14004080 -204033078 - L1MC4 LINE L1 -1032 7010 6725 199 327 144 0 chr3 14004204 14004308 -204032850 - MIR SINE MIR -25 237 119 2382 53 3 43 chr3 14004358 14004660 -204032498 - AluY SINE Alu -18 293 4 543 181 101 7 chr3 14004746 14004884 -204032274 + L1MB7 LINE L1 4981 5131 -1015 210 105 0 0 chr3 14004898 14004936 -204032222 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 936 154 46 36 chr3 14004938 14004995 -204032163 + L1MB7 LINE L1 5107 5162 -1012 2180 117 0 3 chr3 14004995 14005286 -204031872 - AluSx SINE Alu -22 290 1 936 154 46 36 chr3 14005286 14005517 -204031641 + L1MB7 LINE L1 5162 5393 -781 1905 174 0 3 chr3 14005517 14005810 -204031348 + AluJb SINE Alu 1 292 -20 936 154 46 36 chr3 14005810 14005854 -204031304 + L1MB7 LINE L1 5393 5435 -739 871 144 0 27 chr3 14005879 14006025 -204031133 + FLAM_C SINE Alu 1 142 -1 2224 116 3 3 chr3 14006062 14006365 -204030793 + AluSp SINE Alu 1 303 -10 1664 168 14 50 chr3 14006377 14006513 -204030645 + L1MB7 LINE L1 5477 5616 -568 1733 180 3 26 chr3 14006513 14006818 -204030340 + AluJo SINE Alu 9 306 -6 1664 168 14 50 chr3 14006818 14007044 -204030114 + L1MB7 LINE L1 5616 5826 -358 1473 186 4 8 chr3 14007054 14007306 -204029852 + AluJo SINE Alu 3 253 -59 607 159 0 0 chr3 14007362 14007469 -204029689 + L1MB7 LINE L1 6062 6168 -16 2113 137 10 0 chr3 14008442 14008741 -204028417 + AluSx SINE Alu 1 302 -10 665 229 30 43 chr3 14008742 14008863 -204028295 - LTR37A LTR ERV1 -60 366 248 1286 191 47 85 chr3 14008863 14009182 -204027976 + AluJo SINE Alu 1 307 -5 665 229 30 43 chr3 14009182 14009291 -204027867 - LTR37A LTR ERV1 -178 248 139 371 271 143 15 chr3 14009443 14009608 -204027550 - MIR SINE MIR -53 155 10 2178 134 0 6 chr3 14010029 14010343 -204026815 - AluSx SINE Alu 0 312 1 1998 149 3 0 chr3 14010348 14010650 -204026508 - AluSx SINE Alu -9 303 1 618 206 0 30 chr3 14011428 14011559 -204025599 + FLAM_A SINE Alu 1 127 -6 2180 124 3 0 chr3 14011955 14012254 -204024904 + AluSx SINE Alu 1 300 -12 1871 132 24 17 chr3 14012320 14012616 -204024542 + AluJo SINE Alu 1 298 -14 2434 62 7 3 chr3 14012638 14012928 -204024230 + AluY SINE Alu 1 291 -20 207 0 0 0 chr3 14012939 14012962 -204024196 + (T)n Simple_repeat Simple_repeat 1 23 0 574 254 101 32 chr3 14013547 14013764 -204023394 - L2 LINE L2 -1 3312 3081 301 228 22 54 chr3 14013854 14013946 -204023212 + MIR SINE MIR 35 123 -139 2164 127 0 3 chr3 14013946 14014245 -204022913 - AluSc SINE Alu -11 298 1 658 146 0 9 chr3 14014253 14014265 -204022893 - FLAM_C SINE Alu -169 143 132 2463 87 0 0 chr3 14014265 14014576 -204022582 - AluY SINE Alu 0 311 1 658 146 0 9 chr3 14014576 14014673 -204022485 - FLAM_C SINE Alu -180 132 35 2524 55 0 0 chr3 14015650 14015940 -204021218 - AluY SINE Alu -21 290 1 287 338 13 120 chr3 14015941 14016166 -204020992 + L2 LINE L2 2996 3196 -76 272 350 0 0 chr3 14016660 14016779 -204020379 + T-rich Low_complexity Low_complexity 1 119 0 807 143 12 42 chr3 14016883 14017051 -204020107 + AluSg/x SINE Alu 135 297 -15 321 229 12 48 chr3 14017052 14017135 -204020023 + MER5A DNA MER1_type 108 187 -2 2035 108 38 14 chr3 14017427 14017715 -204019443 - AluSx SINE Alu -4 308 14 553 301 82 21 chr3 14017743 14018138 -204019020 - L1ME LINE L1 -422 5699 5255 2293 114 3 0 chr3 14018262 14018568 -204018590 - AluSx SINE Alu -5 307 1 1539 166 3 48 chr3 14018702 14019015 -204018143 + AluJb SINE Alu 13 312 0 2370 69 0 25 chr3 14019120 14019437 -204017721 - AluY SINE Alu 0 311 3 191 237 0 0 chr3 14019666 14019704 -204017454 - MER5B DNA MER1_type -137 41 4 302 307 91 0 chr3 14019715 14019803 -204017355 + L2 LINE L2 3139 3234 -38 958 97 0 0 chr3 14019817 14019941 -204017217 + FLAM_C SINE Alu 19 142 -1 789 247 163 45 chr3 14020328 14020684 -204016474 + L2 LINE L2 2916 3313 0 427 287 114 0 chr3 14020730 14020897 -204016261 - MIR SINE MIR 0 262 77 887 193 27 16 chr3 14020905 14021092 -204016066 + MER5A DNA MER1_type 1 189 0 528 89 129 20 chr3 14021120 14021221 -204015937 - L1MB7 LINE L1 0 6184 6073 192 77 0 0 chr3 14021245 14021271 -204015887 + (A)n Simple_repeat Simple_repeat 1 26 0 1815 63 0 9 chr3 14021274 14021496 -204015662 + AluSq SINE Alu 1 220 -93 741 92 0 23 chr3 14021497 14021649 -204015509 + AluSg/x SINE Alu 118 310 0 1221 30 0 0 chr3 14021655 14021787 -204015371 + AluY SINE Alu 1 132 -179 2557 52 10 0 chr3 14021998 14022306 -204014852 + AluY SINE Alu 1 311 0 318 274 207 40 chr3 14022325 14022625 -204014533 - L2 LINE L2 -159 3113 2766 713 188 42 94 chr3 14022634 14022741 -204014417 + MER5A DNA MER1_type 6 100 -89 2327 95 7 0 chr3 14022741 14023036 -204014122 + AluSx SINE Alu 1 297 -15 713 188 42 94 chr3 14023036 14023120 -204014038 + MER5A DNA MER1_type 100 187 -2 2393 96 0 13 chr3 14023412 14023724 -204013434 - AluSx SINE Alu -4 308 1 303 342 0 0 chr3 14023808 14023884 -204013274 - L2 LINE L2 0 3313 3238 295 246 54 108 chr3 14023935 14024065 -204013093 - L2 LINE L2 -215 3057 2935 1791 175 3 16 chr3 14024099 14024402 -204012756 + AluJo SINE Alu 1 299 -13 2517 96 0 0 chr3 14024689 14025001 -204012157 + AluSx SINE Alu 1 312 0 2467 83 3 10 chr3 14025719 14026031 -204011127 + AluSg SINE Alu 1 310 0 2529 58 0 0 chr3 14026141 14026435 -204010723 - AluY SINE Alu -17 294 1 1774 89 46 19 chr3 14026435 14026694 -204010464 - AluSq SINE Alu -13 300 35 1881 79 0 8 chr3 14026705 14026945 -204010213 - AluY SINE Alu -73 238 1 2098 116 13 20 chr3 14027103 14027404 -204009754 - AluSx SINE Alu -13 299 1 1373 142 40 36 chr3 14027413 14027638 -204009520 - AluJb SINE Alu -23 289 64 25 31 0 0 chr3 14027643 14027675 -204009483 + AT_rich Low_complexity Low_complexity 1 32 0 351 136 0 61 chr3 14027675 14027741 -204009417 - AluJb SINE Alu -220 82 21 2223 122 0 7 chr3 14027764 14028067 -204009091 - AluSx SINE Alu -11 301 1 189 0 0 0 chr3 14028555 14028576 -204008582 + (CAGGC)n Simple_repeat Simple_repeat 5 25 0 2011 157 0 0 chr3 14028641 14028940 -204008218 - AluSx SINE Alu -13 299 1 1775 175 29 0 chr3 14029127 14029469 -204007689 + MLT1A1 LTR MaLR 13 364 -1 256 234 0 0 chr3 14029504 14029568 -204007590 + Charlie5 DNA MER1_type 2430 2493 -119 8067 59 7 21 chr3 14029628 14030611 -204006547 - LTR5 LTR ERVK 0 969 1 411 95 11 168 chr3 14030611 14030706 -204006452 - SVA Other Other -450 936 857 17721 41 2 1 chr3 14030709 14032893 -204004265 - HERVK LTR ERVK -96 7147 4961 * 20958 64 2 3 chr3 14032883 14035602 -204001556 - HERVK LTR ERVK -4528 2715 1 6791 82 11 3 chr3 14035602 14036451 -204000707 - LTR5 LTR ERVK 0 969 115 463 71 43 0 chr3 14036451 14036521 -204000637 - LTR5 LTR ERVK -896 73 1 993 267 44 0 chr3 14036522 14036863 -204000295 + L1M4b LINE L1 594 949 -5910 423 274 0 0 chr3 14038045 14038158 -203999000 - L1MA7 LINE L1 -6 6285 6173 * 672 233 12 81 chr3 14038156 14038414 -203998744 + L1MA7 LINE L1 5893 6132 -159 1565 198 0 42 chr3 14039160 14039473 -203997685 + AluJo SINE Alu 1 300 -12 317 200 24 136 chr3 14039476 14039601 -203997557 + L2 LINE L2 2283 2393 -921 816 156 65 54 chr3 14039603 14039789 -203997369 - AluJo SINE Alu -4 308 121 1651 246 142 25 chr3 14039794 14040029 -203997129 + L2 LINE L2 2401 2607 -706 2566 84 0 0 chr3 14040029 14040340 -203996818 - AluY SINE Alu 0 311 1 1651 246 142 25 chr3 14040340 14040935 -203996223 + L2 LINE L2 2607 3312 -1 214 318 16 0 chr3 14040936 14040999 -203996159 + L2 LINE L2 3247 3310 -3 245 109 22 0 chr3 14041090 14041136 -203996022 + GA-rich Low_complexity Low_complexity 2 48 0 189 107 0 0 chr3 14041131 14041159 -203995999 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 * 891 97 16 8 chr3 14042680 14042804 -203994354 + AluSg SINE Alu 12 136 -174 2286 60 7 20 chr3 14042807 14043106 -203994052 + AluY SINE Alu 1 295 -16 189 0 0 0 chr3 14043113 14043134 -203994024 + (T)n Simple_repeat Simple_repeat 1 21 0 440 294 60 44 chr3 14043721 14043969 -203993189 - L2 LINE L2 -1 3312 3061 254 237 0 58 chr3 14044114 14044253 -203992905 + (CAAA)n Simple_repeat Simple_repeat 3 133 0 427 174 14 0 chr3 14044436 14044505 -203992653 - AluS SINE Alu -239 74 5 765 93 0 0 chr3 14044516 14044613 -203992545 - AluSg/x SINE Alu -17 295 199 2397 95 0 0 chr3 14044626 14044920 -203992238 - AluSg SINE Alu -16 294 1 10044 110 12 35 chr3 14044920 14045219 -203991939 - Tigger1 DNA MER2_type -823 1595 1291 2211 121 3 0 chr3 14045219 14045524 -203991634 - AluSg1 SINE Alu -3 306 1 10044 110 12 35 chr3 14045524 14046337 -203990821 - Tigger1 DNA MER2_type -1127 1291 461 2883 16 0 3 chr3 14046337 14046653 -203990505 - AluYb8 SINE Alu -3 315 1 10044 110 12 35 chr3 14046653 14046682 -203990476 - Tigger1 DNA MER2_type -1957 461 433 858 150 0 15 chr3 14046682 14046815 -203990343 - FLAM_C SINE Alu -2 131 1 10044 110 12 35 chr3 14046815 14047304 -203989854 - Tigger1 DNA MER2_type -1985 433 1 200 182 0 0 chr3 14047384 14047417 -203989741 + GA-rich Low_complexity Low_complexity 3 35 0 1982 114 14 14 chr3 14047438 14047751 -203989407 + AluSx SINE Alu 1 312 0 2214 107 0 10 chr3 14047951 14048240 -203988918 - AluSx SINE Alu -26 286 1 1790 150 21 0 chr3 14048266 14048546 -203988612 - AluJo SINE Alu -26 286 1 1172 246 128 20 chr3 14049049 14049412 -203987746 + L1ME3A LINE L1 5572 5985 -185 2442 82 0 0 chr3 14049412 14049706 -203987452 + AluY SINE Alu 1 294 -17 1172 246 128 20 chr3 14049706 14049749 -203987409 + L1ME3A LINE L1 5985 6022 -148 1816 154 20 30 chr3 14049843 14050141 -203987017 + AluJb SINE Alu 1 295 -17 520 264 44 39 chr3 14050158 14050340 -203986818 + L1MC4a LINE L1 5706 5888 -1920 243 286 24 32 chr3 14050729 14050855 -203986303 + L1ME4a LINE L1 5603 5727 -394 245 229 36 24 chr3 14050856 14050939 -203986219 + GA-rich Low_complexity Low_complexity 1 84 0 347 316 75 8 chr3 14050972 14051105 -203986053 + L1ME4a LINE L1 5777 5918 -203 905 240 107 25 chr3 14051127 14051369 -203985789 - MIR SINE MIR 0 262 1 195 42 0 0 chr3 14051672 14051696 -203985462 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 2057 144 16 0 chr3 14051703 14052008 -203985150 - AluSq SINE Alu -3 310 1 935 267 18 14 chr3 14052303 14052580 -203984578 + L2 LINE L2 2430 2707 -607 995 155 202 19 chr3 14052591 14052798 -203984360 + AluSg1 SINE Alu 1 247 -57 1491 135 0 5 chr3 14052798 14053013 -203984145 + AluJo SINE Alu 85 298 -14 259 228 195 34 chr3 14053018 14053201 -203983957 + L2 LINE L2 2726 2932 -340 659 320 152 29 chr3 14053546 14054349 -203982809 + L2 LINE L2 1988 2889 -425 613 296 137 17 chr3 14054407 14054605 -203982553 - MIR SINE MIR 0 262 31 2207 108 0 3 chr3 14054605 14054910 -203982248 - AluSx SINE Alu -8 304 1 613 296 137 17 chr3 14054910 14054944 -203982214 - MIR SINE MIR -231 31 2 234 191 64 0 chr3 14054992 14055039 -203982119 - L2 LINE L2 0 3272 3223 2087 116 7 3 chr3 14055083 14055384 -203981774 + AluSq SINE Alu 1 302 -11 1472 278 94 10 chr3 14055650 14056259 -203980899 + L1MC4a LINE L1 5260 5919 -1889 943 194 6 0 chr3 14056263 14056433 -203980725 + MLT1F1 LTR MaLR 5 175 -392 1457 156 30 165 chr3 14056433 14056541 -203980617 + L1MB8 LINE L1 4675 4796 -1350 1500 168 37 27 chr3 14056541 14056838 -203980320 + AluJo SINE Alu 12 311 -1 1457 156 30 165 chr3 14056838 14056865 -203980293 + L1MB8 LINE L1 4796 4825 -1321 2174 82 3 14 chr3 14056865 14057158 -203980000 - AluSg SINE Alu -19 291 2 1457 156 30 165 chr3 14057158 14057407 -203979751 + L1MB8 LINE L1 4825 4987 -1159 1996 135 0 0 chr3 14057407 14057703 -203979455 + AluSx SINE Alu 1 296 -16 1457 156 30 165 chr3 14057703 14057789 -203979369 + L1MB8 LINE L1 4987 5083 -1063 3064 165 9 55 chr3 14057789 14057921 -203979237 + L1MB8 LINE L1 5561 5697 -481 2081 123 0 0 chr3 14057921 14058221 -203978937 + AluSx SINE Alu 1 300 -12 3064 165 9 55 chr3 14058221 14058444 -203978714 + L1MB8 LINE L1 5697 5929 -249 1903 143 7 7 chr3 14058444 14058744 -203978414 + AluJo SINE Alu 3 302 -10 3064 165 9 55 chr3 14058744 14059025 -203978133 + L1MB8 LINE L1 5929 6169 -9 896 194 42 73 chr3 14059045 14059137 -203978021 + MLT1F1 LTR MaLR 167 260 -307 2388 66 3 0 chr3 14059137 14059442 -203977716 + AluY SINE Alu 1 306 -5 896 194 42 73 chr3 14059442 14059632 -203977526 + MLT1F1 LTR MaLR 260 543 -24 1789 155 30 3 chr3 14059647 14059943 -203977215 - AluJb SINE Alu -8 304 1 257 81 0 0 chr3 14059943 14059980 -203977178 + MLT1F1 LTR MaLR 530 566 -1 24 32 0 0 chr3 14060193 14060224 -203976934 + AT_rich Low_complexity Low_complexity 1 31 0 1973 130 3 0 chr3 14060263 14060578 -203976580 + AluSx SINE Alu 1 312 0 601 245 68 112 chr3 14060717 14061011 -203976147 + L2 LINE L2 2981 3261 -11 385 301 16 38 chr3 14061038 14061221 -203975937 + GA-rich Low_complexity Low_complexity 2 180 0 765 159 24 0 chr3 14061317 14061443 -203975715 + AluJo/FLAM SINE Alu 2 130 -172 437 85 0 10 chr3 14061446 14061603 -203975555 + AluSq SINE Alu 44 250 -63 1060 204 23 9 chr3 14061603 14061648 -203975510 + AluJo SINE Alu 85 128 -184 258 32 0 0 chr3 14061648 14061679 -203975479 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 1060 204 23 9 chr3 14061679 14061853 -203975305 + AluJo SINE Alu 128 307 -5 2293 96 0 3 chr3 14061951 14062264 -203974894 + AluSx SINE Alu 1 312 0 260 288 123 0 chr3 14062369 14062442 -203974716 + L2 LINE L2 3229 3310 -3 383 211 150 54 chr3 14062466 14062613 -203974545 + MIR3 SINE MIR 36 196 -12 517 286 112 33 chr3 14062705 14062910 -203974248 - MIR SINE MIR 0 262 34 1903 155 0 0 chr3 14062910 14063207 -203973951 - AluJo SINE Alu -15 297 1 517 286 112 33 chr3 14063207 14063242 -203973916 - MIR SINE MIR -228 34 3 268 276 21 22 chr3 14063408 14063569 -203973589 + MIR SINE MIR 26 250 -12 1972 130 0 0 chr3 14063697 14064014 -203973144 - AluJb SINE Alu 0 312 1 702 254 27 22 chr3 14064021 14064206 -203972952 + MIR SINE MIR 29 214 -48 1548 262 135 39 chr3 14064551 14065085 -203972073 + MLT1K LTR MaLR 4 588 0 2247 83 0 13 chr3 14065322 14065622 -203971536 + AluSq SINE Alu 1 296 -17 878 134 0 0 chr3 14065813 14065940 -203971218 - FLAM_C SINE Alu -16 127 1 214 381 48 8 chr3 14065974 14066100 -203971058 - MIR SINE MIR -55 153 23 463 222 79 84 chr3 14066230 14066433 -203970725 + MIR3 SINE MIR 3 204 -4 703 315 141 21 chr3 14066702 14067184 -203969974 + MARNA DNA Mariner 34 573 -13 425 282 81 24 chr3 14067696 14067820 -203969338 - MIR SINE MIR -59 149 19 237 252 0 73 chr3 14068594 14068745 -203968413 + G-rich Low_complexity Low_complexity 1 140 0 21 89 0 0 chr3 14069516 14069572 -203967586 + GC_rich Low_complexity Low_complexity 1 56 0 23 86 0 0 chr3 14069762 14069820 -203967338 + GC_rich Low_complexity Low_complexity 1 58 0 292 301 0 0 chr3 14070294 14070387 -203966771 + L2 LINE L2 3211 3303 -10 270 234 56 56 chr3 14070508 14070615 -203966543 + MIR SINE MIR 39 145 -63 883 187 0 0 chr3 14070734 14070889 -203966269 + FRAM SINE Alu 1 155 -11 227 294 42 42 chr3 14071289 14071408 -203965750 - MIR3 SINE MIR 0 208 90 450 204 34 109 chr3 14071457 14071604 -203965554 - L2 LINE L2 0 3272 3137 258 32 0 0 chr3 14071990 14072021 -203965137 + (TC)n Simple_repeat Simple_repeat 2 32 0 369 0 0 0 chr3 14072023 14072064 -203965094 + (CA)n Simple_repeat Simple_repeat 1 41 0 740 262 87 36 chr3 14072075 14072350 -203964808 + MLT1K LTR MaLR 138 426 -162 2154 116 3 0 chr3 14072350 14072725 -203964433 + AluSx SINE Alu 1 376 0 599 222 54 11 chr3 14072725 14072910 -203964248 + MLT1K LTR MaLR 379 571 -17 1984 122 20 0 chr3 14073003 14073489 -203963669 + AluSq SINE Alu 1 313 0 437 318 79 9 chr3 14073521 14073735 -203963423 + MIR SINE MIR 33 261 -1 945 221 61 35 chr3 14074071 14074154 -203963004 - MIR SINE MIR -21 241 162 2055 158 39 16 chr3 14074154 14074535 -203962623 + MLT1B LTR MaLR 1 390 0 945 221 61 35 chr3 14074535 14074682 -203962476 - MIR SINE MIR -100 162 5 2005 116 13 16 chr3 14074703 14075013 -203962145 - AluSx SINE Alu -3 309 1 466 270 209 23 chr3 14075056 14075271 -203961887 + MIR SINE MIR 6 260 -2 5390 36 8 159 chr3 14075282 14076305 -203960853 + SVA Other Other 1 868 -518 2027 128 0 13 chr3 14076563 14076868 -203960290 + AluSx SINE Alu 1 301 -11 977 196 10 10 chr3 14076869 14077063 -203960095 - L1PB4 LINE L1 -14 6142 5949 2300 61 0 10 chr3 14077693 14077990 -203959168 - AluY SINE Alu -17 294 1 757 165 0 0 chr3 14078000 14078121 -203959037 - FLAM_C SINE Alu -22 121 1 462 65 0 0 chr3 14078314 14078376 -203958782 + (GA)n Simple_repeat Simple_repeat 1 62 0 874 141 0 15 chr3 14078524 14078659 -203958499 - FLAM_A SINE Alu 0 133 1 541 80 91 11 chr3 14078922 14079010 -203958148 + MLT1B LTR MaLR 238 332 -58 1080 125 11 11 chr3 14079010 14079186 -203957972 + AluY SINE Alu 136 311 0 329 134 119 15 chr3 14079193 14079260 -203957898 + MLT1B LTR MaLR 317 390 0 392 256 115 39 chr3 14079284 14079440 -203957718 - L2 LINE L2 -10 3303 3136 203 266 31 62 chr3 14079481 14079545 -203957613 + MIR SINE MIR 85 146 -62 23 0 0 0 chr3 14079601 14079624 -203957534 + AT_rich Low_complexity Low_complexity 1 23 0 1034 170 0 11 chr3 14079639 14079821 -203957337 - AluJb SINE Alu -11 301 122 580 274 17 45 chr3 14080106 14080227 -203956931 - L1MDa LINE L1 -3343 3197 3074 1562 171 0 63 chr3 14080227 14080560 -203956598 + AluJo SINE Alu 1 312 0 580 274 17 45 chr3 14080560 14080726 -203956432 - L1MDa LINE L1 -3466 3074 2918 538 229 12 54 chr3 14080714 14080880 -203956278 + L1ME2 LINE L1 5996 6154 -10 * 265 282 53 0 chr3 14081408 14081539 -203955619 - L1MDa LINE L1 -3959 2581 2444 2426 46 0 33 chr3 14081795 14082101 -203955057 - AluY SINE Alu -15 296 1 796 230 0 0 chr3 14082176 14082328 -203954830 + FRAM SINE Alu 1 152 -14 4635 137 37 18 chr3 14082506 14083325 -203953833 - L1MB4 LINE L1 -10 6170 5337 2026 103 31 0 chr3 14083327 14083617 -203953541 + AluSx SINE Alu 1 299 -13 1734 217 5 8 chr3 14083641 14084032 -203953126 - L1MB4 LINE L1 -940 5206 4817 1105 126 12 0 chr3 14084034 14084201 -203952957 - AluSg/x SINE Alu -13 299 131 661 190 41 8 chr3 14084356 14084477 -203952681 - FLAM_C SINE Alu -17 126 2 3603 194 53 52 chr3 14084669 14085379 -203951779 - L1ME1 LINE L1 -5 6161 5449 9946 41 73 5 chr3 14085379 14086694 -203950464 + SVA Other Other 1 1402 0 3603 194 53 52 chr3 14086694 14086909 -203950249 - L1ME1 LINE L1 -717 5449 5236 672 103 62 0 chr3 14086912 14087030 -203950128 - LTR49 LTR ERV1 -3 592 486 580 208 10 0 chr3 14087036 14087132 -203950026 + LTR49-int LTR ERV1 1 97 -6234 2016 134 0 7 chr3 14087133 14087440 -203949718 - AluSx SINE Alu -7 305 1 1914 154 77 100 chr3 14087442 14087910 -203949248 + LTR49-int LTR ERV1 734 1190 -5141 336 257 0 14 chr3 14087937 14088007 -203949151 + tRNA-Glu-GAG tRNA tRNA 7 75 0 549 115 67 5 chr3 14088061 14088165 -203948993 + LTR49-int LTR ERV1 1290 1934 -2946 2122 98 11 0 chr3 14088260 14088547 -203948611 + AluY SINE Alu 10 299 -12 3852 157 13 51 chr3 14088582 14088867 -203948291 + LTR49-int LTR ERV1 1372 1666 -4665 2153 90 0 7 chr3 14088867 14089156 -203948002 + AluSg1 SINE Alu 5 291 -18 3852 157 13 51 chr3 14089156 14089615 -203947543 + LTR49-int LTR ERV1 1666 2088 -4243 3878 128 10 38 chr3 14089621 14090230 -203946928 - LTR26 LTR ERV1 -11 592 1 438 331 66 36 chr3 14090232 14090537 -203946621 - HUERS-P1 LTR ERV1 -4 6259 5946 335 286 81 49 chr3 14090614 14090799 -203946359 - HERV30 LTR ERV1 -488 4466 4276 1808 176 0 0 chr3 14090961 14091273 -203945885 - AluJo SINE Alu 0 312 1 2222 115 0 0 chr3 14092104 14092416 -203944742 + AluSx SINE Alu 1 312 0 1900 131 37 0 chr3 14092535 14092832 -203944326 + AluSx SINE Alu 1 308 -4 639 283 45 82 chr3 14093062 14093333 -203943825 - HERV30 LTR ERV1 -517 7603 7323 1660 160 3 13 chr3 14093333 14093633 -203943525 + AluJb SINE Alu 1 297 -15 639 283 45 82 chr3 14093633 14093844 -203943314 - HERV30 LTR ERV1 -797 7323 5010 2231 81 10 0 chr3 14093844 14094139 -203943019 - AluSg SINE Alu -12 298 1 447 343 25 47 chr3 14094143 14094507 -203942651 - HERV30 LTR ERV1 -2093 5029 4674 2167 82 0 3 chr3 14094606 14094897 -203942261 + AluSg SINE Alu 1 290 -20 1626 338 42 44 chr3 14095238 14095273 -203941885 - HERV30 LTR ERV1 -2813 4756 4722 1708 188 0 0 chr3 14095273 14095566 -203941592 + AluJo SINE Alu 3 295 -17 1626 338 42 44 chr3 14095566 14096988 -203940170 - HERV30 LTR ERV1 -2847 4722 2832 411 100 0 0 chr3 14097060 14097120 -203940038 + Alu SINE Alu 248 307 -4 793 340 47 50 chr3 14097187 14097828 -203939330 - HERV30 LTR ERV1 -5568 1554 916 401 286 31 8 chr3 14098011 14098179 -203938979 - HERV30 LTR ERV1 -5067 1611 1448 * 1721 258 47 59 chr3 14098156 14098768 -203938390 - HERV30 LTR ERV1 -5188 1075 471 2375 68 0 7 chr3 14098885 14099195 -203937963 + AluY SINE Alu 1 308 -3 310 364 45 13 chr3 14099207 14099361 -203937797 - HERV30 LTR ERV1 -6080 183 25 3415 136 30 76 chr3 14099385 14100017 -203937141 - LTR26 LTR ERV1 0 603 1 371 88 29 88 chr3 14100019 14100041 -203937117 + LTR49-int LTR ERV1 2084 2106 -4225 2015 143 74 36 chr3 14100041 14100229 -203936929 - LTR23 LTR ERV1 0 437 258 2183 90 3 13 chr3 14100229 14100539 -203936619 + AluSx SINE Alu 1 307 -5 2015 143 74 36 chr3 14100539 14100771 -203936387 - LTR23 LTR ERV1 -179 258 1 371 88 29 88 chr3 14100771 14100816 -203936342 + LTR49-int LTR ERV1 2106 2147 -4184 2063 121 3 33 chr3 14100821 14100940 -203936218 - L1PB3 LINE L1 -7 6147 6026 363 23 0 0 chr3 14100940 14100984 -203936174 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2218 68 11 0 chr3 14100984 14101265 -203935893 - AluSp SINE Alu -29 284 1 2063 121 3 33 chr3 14101265 14101474 -203935684 - L1PB3 LINE L1 -126 6028 5828 1874 127 37 3 chr3 14101474 14101773 -203935385 - AluSx SINE Alu -3 309 1 3991 166 13 22 chr3 14101776 14101885 -203935273 - L1PB3 LINE L1 -464 5690 5582 2073 112 3 7 chr3 14101885 14102189 -203934969 + AluSx SINE Alu 4 306 -6 3991 166 13 22 chr3 14102189 14102636 -203934522 - L1PB3 LINE L1 -572 5582 5132 1932 119 0 14 chr3 14102636 14102946 -203934212 - AluSx SINE Alu 0 306 1 3991 166 13 22 chr3 14102946 14103609 -203933549 - L1PB3 LINE L1 -1022 5132 4484 2163 69 13 7 chr3 14103609 14103915 -203933243 - AluY SINE Alu -3 308 1 674 173 0 0 chr3 14103920 14104030 -203933128 - FLAM_C SINE Alu -15 128 19 740 147 0 0 chr3 14104031 14104140 -203933018 + MER50 LTR ERV1 70 178 -556 1894 136 17 0 chr3 14104145 14104439 -203932719 + AluSp SINE Alu 1 299 -14 345 132 38 0 chr3 14104447 14104500 -203932658 + LTR49 LTR ERV1 535 589 -6 1313 197 19 104 chr3 14104502 14104555 -203932603 - L1M4 LINE L1 -904 5242 5186 2322 66 7 3 chr3 14104555 14104856 -203932302 - AluY SINE Alu -9 302 1 1313 197 19 104 chr3 14104856 14104953 -203932205 - L1M4 LINE L1 -960 5186 5082 1858 150 10 16 chr3 14104953 14105267 -203931891 - AluJo SINE Alu 0 312 1 1313 197 19 104 chr3 14105267 14105547 -203931611 - L1M4 LINE L1 -1064 5082 4848 776 216 13 0 chr3 14105534 14105687 -203931471 + L1MB7 LINE L1 5425 5579 -587 * 1754 176 6 6 chr3 14105687 14105999 -203931159 + AluJb SINE Alu 1 312 0 389 114 48 59 chr3 14106018 14106081 -203931077 + L1MB7 LINE L1 5552 5616 -549 2570 132 50 68 chr3 14106081 14106580 -203930578 + LTR2B LTR ERV1 1 490 0 389 114 48 59 chr3 14106580 14106612 -203930546 + L1MB7 LINE L1 5616 5647 -518 496 236 49 0 chr3 14106813 14106936 -203930222 + L1MB7 LINE L1 5635 5763 -401 1667 112 4 45 chr3 14106936 14107203 -203929955 + LTR8 LTR ERV1 1 256 -435 7304 44 7 99 chr3 14107203 14108350 -203928808 + SVA Other Other 7 1047 -339 473 196 50 33 chr3 14108396 14108546 -203928612 + L1MC5 LINE L1 7786 7995 0 2731 91 16 139 chr3 14108567 14108888 -203928270 + LTR8 LTR ERV1 240 475 -216 1705 178 20 0 chr3 14108888 14109191 -203927967 + AluJb SINE Alu 1 309 -3 2731 91 16 139 chr3 14109191 14109385 -203927773 + LTR8 LTR ERV1 475 691 0 614 204 69 61 chr3 14109387 14109672 -203927486 - LTR48B LTR ERV1 -10 729 382 273 167 45 15 chr3 14109735 14109801 -203927357 - LTR48B LTR ERV1 -449 195 128 268 274 104 19 chr3 14109773 14109879 -203927279 - MER39 LTR ERV1 -582 125 11 * 1102 170 131 0 chr3 14109912 14110118 -203927040 - MER34C LTR ERV1 -352 233 1 2278 166 14 2 chr3 14110120 14110548 -203926610 + L1MB7 LINE L1 5752 6184 0 2209 88 3 3 chr3 14110558 14110854 -203926304 + AluSx SINE Alu 1 296 -16 617 215 28 0 chr3 14110854 14110998 -203926160 - L1M4 LINE L1 -1291 4855 4708 242 28 0 28 chr3 14110998 14111034 -203926124 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 990 157 20 108 chr3 14111035 14111149 -203926009 - AluJo SINE Alu -80 232 150 1683 101 0 4 chr3 14111149 14111377 -203925781 - AluSc SINE Alu -82 227 1 990 157 20 108 chr3 14111377 14111511 -203925647 - AluJo SINE Alu -162 150 6 1083 202 72 19 chr3 14111516 14111823 -203925335 - L1M4 LINE L1 -1440 4706 4384 1623 158 3 30 chr3 14111829 14111883 -203925275 - AluJb SINE Alu -21 291 237 2190 158 12 6 chr3 14111883 14112224 -203924934 + MER61A LTR ERV1 1 343 0 1623 158 3 30 chr3 14112224 14112467 -203924691 - AluJb SINE Alu -75 237 2 2089 68 64 20 chr3 14112520 14112816 -203924342 - AluY SINE Alu -2 309 1 2059 111 0 55 chr3 14112831 14113156 -203924002 - AluSg SINE Alu -1 309 3 2250 91 7 3 chr3 14113193 14113501 -203923657 - AluY SINE Alu -2 309 1 1400 220 58 47 chr3 14113512 14113901 -203923257 - L1M4 LINE L1 -1807 4339 3943 2213 89 0 13 chr3 14113901 14114205 -203922953 - AluSc SINE Alu -9 300 1 1400 220 58 47 chr3 14114205 14114265 -203922893 - L1M4 LINE L1 -2203 3943 3885 1446 204 72 135 chr3 14114265 14114990 -203922168 - LTR8A LTR ERV1 0 727 49 976 153 10 61 chr3 14114992 14115188 -203921970 - LTR8 LTR ERV1 -503 188 3 5048 70 14 43 chr3 14115188 14115768 -203921390 - LTR8 LTR ERV1 0 691 134 2169 29 39 59 chr3 14115768 14116075 -203921083 + AluY SINE Alu 1 301 -10 5048 70 14 43 chr3 14116075 14116206 -203920952 - LTR8 LTR ERV1 -557 134 1 519 138 0 12 chr3 14116268 14116348 -203920810 - AluJ/FLAM SINE Alu -225 87 9 552 238 67 54 chr3 14116359 14116582 -203920576 - L1M4 LINE L1 -2368 3778 3553 22 35 0 0 chr3 14116598 14116627 -203920531 + GC_rich Low_complexity Low_complexity 1 29 0 2008 103 3 0 chr3 14117032 14117322 -203919836 + AluSx SINE Alu 1 291 -21 1812 157 0 0 chr3 14117337 14117636 -203919522 + AluJo SINE Alu 1 299 -13 1909 115 41 0 chr3 14117900 14118195 -203918963 + AluSq SINE Alu 1 307 -6 180 0 0 0 chr3 14118195 14118215 -203918943 + (TA)n Simple_repeat Simple_repeat 2 21 0 2141 65 25 0 chr3 14119303 14119603 -203917555 - AluSp SINE Alu 0 307 1 694 263 28 49 chr3 14120080 14120124 -203917034 - L1M4 LINE L1 -2585 3561 3518 2319 78 0 10 chr3 14120124 14120433 -203916725 - AluY SINE Alu -5 306 1 694 263 28 49 chr3 14120433 14120473 -203916685 - L1M4 LINE L1 -2628 3518 3479 1626 158 39 7 chr3 14120473 14120758 -203916400 + AluJb SINE Alu 1 294 -18 694 263 28 49 chr3 14120758 14120957 -203916201 - L1M4 LINE L1 -2667 3479 3283 236 185 62 0 chr3 14120962 14121027 -203916131 - L1MB5 LINE L1 -6 6168 6100 1799 180 59 71 chr3 14121027 14121466 -203915692 - LTR8A LTR ERV1 0 727 294 291 260 68 0 chr3 14121464 14121537 -203915621 - LTR8 LTR ERV1 -613 78 1 * 795 191 48 33 chr3 14121540 14121750 -203915408 - L1MB5 LINE L1 -74 6100 5888 807 173 0 33 chr3 14121750 14121900 -203915258 - AluJb SINE Alu -82 230 86 860 145 0 0 chr3 14121921 14122045 -203915113 - FLAM_C SINE Alu -8 125 2 23 0 0 0 chr3 14122054 14122077 -203915081 + AT_rich Low_complexity Low_complexity 1 23 0 393 284 36 4 chr3 14122177 14122357 -203914801 - L1MEd LINE L1 -1231 1259 983 22 0 0 0 chr3 14122362 14122384 -203914774 + AT_rich Low_complexity Low_complexity 1 22 0 1892 133 7 20 chr3 14122391 14122527 -203914631 + AluSx SINE Alu 1 137 -175 2236 102 3 0 chr3 14122527 14122830 -203914328 + AluSp SINE Alu 2 305 -8 1892 133 7 20 chr3 14122830 14122984 -203914174 + AluSx SINE Alu 137 289 -23 249 57 0 0 chr3 14122984 14123019 -203914139 + (CATA)n Simple_repeat Simple_repeat 2 36 0 786 161 0 0 chr3 14123028 14123146 -203914012 - FLAM_C SINE Alu -15 118 1 1930 141 0 3 chr3 14123211 14123502 -203913656 - AluSx SINE Alu -20 292 3 991 193 0 6 chr3 14123519 14123690 -203913468 - FAM SINE Alu -1 174 5 783 173 0 67 chr3 14123745 14123895 -203913263 + Tigger2a DNA MER2_type 1 140 -294 2116 104 20 0 chr3 14123895 14124193 -203912965 + AluY SINE Alu 1 304 -7 2079 108 6 25 chr3 14124193 14124509 -203912649 + AluSg SINE Alu 1 310 0 1979 112 37 27 chr3 14124509 14124805 -203912353 - THE1B LTR MaLR -65 299 1 918 41 0 0 chr3 14124805 14124926 -203912232 + Tigger2a DNA MER2_type 162 282 -162 1680 168 0 23 chr3 14124928 14125232 -203911926 + AluJo SINE Alu 3 299 -13 292 243 14 14 chr3 14125232 14125302 -203911856 + Tigger2a DNA MER2_type 375 444 0 2169 110 0 3 chr3 14125389 14125690 -203911468 - AluSq SINE Alu -13 300 1 446 297 198 4 chr3 14126072 14126304 -203910854 - MLT1L LTR MaLR -123 492 216 1690 141 31 10 chr3 14126551 14126841 -203910317 - AluJo SINE Alu -12 300 5 2416 53 0 13 chr3 14126880 14127183 -203909975 - AluY SINE Alu -12 299 1 1906 144 0 0 chr3 14127356 14127647 -203909511 - AluSx SINE Alu -21 291 1 617 212 74 20 chr3 14127680 14127734 -203909424 - MIR3 SINE MIR -55 153 103 2230 132 72 46 chr3 14127734 14128151 -203909007 + MSTA LTR MaLR 1 428 0 617 212 74 20 chr3 14128151 14128297 -203908861 - MIR3 SINE MIR -105 103 3 1627 240 45 35 chr3 14129114 14129340 -203907818 + Zaphod DNA AcHobo 1 234 -3797 1751 180 3 0 chr3 14129340 14129651 -203907507 + AluJb SINE Alu 1 312 0 1627 240 45 35 chr3 14129651 14129849 -203907309 + Zaphod DNA AcHobo 234 429 -3602 1362 116 55 116 chr3 14129851 14130070 -203907088 - L1PA15 LINE L1 -4 6161 5963 1888 103 82 10 chr3 14130070 14130361 -203906797 - AluSx SINE Alu 0 312 1 1362 116 55 116 chr3 14130361 14130433 -203906725 - L1PA15 LINE L1 -202 5963 5888 1645 176 27 117 chr3 14130435 14130740 -203906418 + Zaphod DNA AcHobo 422 753 -3278 976 207 0 11 chr3 14130740 14130914 -203906244 + FAM SINE Alu 1 172 -3 1806 174 0 0 chr3 14130918 14131217 -203905941 + AluJo SINE Alu 1 299 -13 1645 176 27 117 chr3 14131217 14131502 -203905656 + Zaphod DNA AcHobo 756 963 -3068 777 202 82 16 chr3 14131516 14131759 -203905399 + Zaphod DNA AcHobo 3595 3853 -178 1948 147 0 3 chr3 14131760 14132067 -203905091 + AluSx SINE Alu 1 306 -6 433 252 55 0 chr3 14132144 14132271 -203904887 + L2 LINE L2 2919 3052 -261 413 58 0 0 chr3 14132399 14132451 -203904707 + L1MA7 LINE L1 5857 5908 -383 366 312 132 10 chr3 14132458 14132663 -203904495 + L2 LINE L2 3084 3313 0 528 227 63 48 chr3 14132727 14132934 -203904224 + L1MC5 LINE L1 7705 7914 -47 250 354 39 22 chr3 14133093 14133271 -203903887 - L2 LINE L2 -188 3084 2904 698 269 77 21 chr3 14133290 14133718 -203903440 - MLT1L LTR MaLR -42 573 89 297 307 13 33 chr3 14133806 14133956 -203903202 - L2 LINE L2 -575 2739 2593 743 288 5 5 chr3 14133961 14134166 -203902992 + LTR33 LTR ERVL 9 213 -308 3159 203 63 16 chr3 14134269 14134953 -203902205 + LTR28 LTR ERV1 1 716 -304 818 214 3 124 chr3 14134928 14135227 -203901931 + MER52A LTR ERV1 1208 1470 -285 * 343 219 81 31 chr3 14135239 14135370 -203901788 + MER52A LTR ERV1 587 635 -1 295 264 52 97 chr3 14135381 14135478 -203901680 + LTR33 LTR ERVL 374 464 -57 2166 89 0 0 chr3 14135478 14135803 -203901355 - AluSc SINE Alu 0 325 1 295 264 52 97 chr3 14135803 14135859 -203901299 + LTR33 LTR ERVL 464 521 0 1868 147 0 7 chr3 14136104 14136404 -203900754 + AluSx SINE Alu 1 298 -14 871 133 37 0 chr3 14136591 14136726 -203900432 - LTR23 LTR ERV1 0 437 298 1816 146 4 4 chr3 14136729 14137049 -203900109 - AluJb SINE Alu 0 320 1 1180 166 4 57 chr3 14137049 14137296 -203899862 - LTR23 LTR ERV1 -203 234 1 1353 195 37 104 chr3 14137296 14137788 -203899370 + MLT1C LTR MaLR 9 467 0 1246 181 116 32 chr3 14137942 14138219 -203898939 + AluJo SINE Alu 1 300 -12 1100 238 52 82 chr3 14138274 14138667 -203898491 - L1MC5 LINE L1 -99 7862 7492 1965 149 7 0 chr3 14138667 14138968 -203898190 - AluSx SINE Alu -9 303 1 1100 238 52 82 chr3 14138968 14139187 -203897971 - L1MC5 LINE L1 -469 7492 7268 457 202 12 0 chr3 14139370 14139454 -203897704 - AluS SINE Alu -223 90 6 538 199 160 6 chr3 14139459 14139615 -203897543 - L1MEc LINE L1 -3746 2469 2290 1870 172 60 109 chr3 14139650 14140017 -203897141 - L1ME2 LINE L1 -185 5979 5650 2237 110 7 0 chr3 14140017 14140327 -203896831 - AluSx SINE Alu 0 312 1 1870 172 60 109 chr3 14140327 14140547 -203896611 - L1ME2 LINE L1 -514 5650 5421 1329 152 119 30 chr3 14140575 14140650 -203896508 - AluJo SINE Alu -19 293 226 2092 189 41 41 chr3 14140650 14141136 -203896022 - MER66B LTR ERV1 0 486 1 1329 152 119 30 chr3 14141136 14141329 -203895829 - AluJo SINE Alu -86 226 1 342 0 0 0 chr3 14141331 14141369 -203895789 + (TA)n Simple_repeat Simple_repeat 1 38 0 1979 127 3 0 chr3 14141370 14141661 -203895497 - AluSx SINE Alu -20 292 1 364 304 44 13 chr3 14141687 14141845 -203895313 - L1MEc LINE L1 -4595 1801 1639 352 42 0 0 chr3 14141853 14141901 -203895257 - AluY SINE Alu 0 302 255 1504 168 0 25 chr3 14141901 14142181 -203894977 + AluJb SINE Alu 23 295 -17 697 229 44 84 chr3 14142183 14142372 -203894786 - L1ME3 LINE L1 -7 6155 5979 1927 133 0 25 chr3 14142372 14142687 -203894471 - AluSx SINE Alu -5 307 1 697 229 44 84 chr3 14142687 14142746 -203894412 - L1ME3 LINE L1 -183 5979 5919 593 122 28 37 chr3 14142792 14142899 -203894259 - L1MB8 LINE L1 -38 6140 6035 380 242 0 22 chr3 14142902 14142993 -203894165 - MLT1F LTR MaLR -407 135 47 2094 126 0 0 chr3 14143207 14143509 -203893649 - AluSx SINE Alu -10 302 1 2128 100 6 16 chr3 14143517 14143828 -203893330 - AluSp SINE Alu -4 309 2 480 200 139 133 chr3 14143869 14143935 -203893223 + MER5A DNA MER1_type 9 73 -116 1744 141 3 17 chr3 14143935 14144226 -203892932 + AluJo SINE Alu 1 287 -25 480 200 139 133 chr3 14144226 14144339 -203892819 + MER5A DNA MER1_type 73 189 0 426 207 24 0 chr3 14144369 14144451 -203892707 + FLAM SINE Alu 40 123 -20 202 239 0 0 chr3 14144514 14144560 -203892598 + A-rich Low_complexity Low_complexity 1 46 0 350 235 53 38 chr3 14144573 14144705 -203892453 + L1M4 LINE L1 4999 5132 -1014 327 262 50 21 chr3 14144743 14144884 -203892274 + L1M4 LINE L1 5103 5247 -899 4669 104 6 56 chr3 14144889 14145617 -203891541 - LTR8 LTR ERV1 0 691 1 26532 104 107 122 chr3 14145617 14146254 -203890904 - HUERS-P1 LTR ERV1 0 6263 5618 2316 75 0 0 chr3 14146254 14146548 -203890610 - AluY SINE Alu -17 294 1 26532 104 107 122 chr3 14146548 14146575 -203890583 - HUERS-P1 LTR ERV1 -645 5618 5592 1738 125 31 48 chr3 14146575 14146896 -203890262 + AluSx SINE Alu 1 316 0 26532 104 107 122 chr3 14146896 14147199 -203889959 - HUERS-P1 LTR ERV1 -671 5592 5286 2235 78 3 3 chr3 14147199 14147493 -203889665 - AluSp SINE Alu -18 295 2 26532 104 107 122 chr3 14147493 14147771 -203889387 - HUERS-P1 LTR ERV1 -977 5286 5005 1812 122 0 42 chr3 14147771 14148092 -203889066 - AluSx SINE Alu 0 315 7 26532 104 107 122 chr3 14148092 14148120 -203889038 - HUERS-P1 LTR ERV1 -1258 5005 4978 2009 104 13 13 chr3 14148120 14148429 -203888729 - AluSc SINE Alu 0 309 1 1031 54 0 8 chr3 14148435 14148565 -203888593 - AluY SINE Alu -85 226 98 26532 104 107 122 chr3 14148565 14148681 -203888477 - HUERS-P1 LTR ERV1 -1290 4973 4857 2111 80 0 0 chr3 14148681 14148956 -203888202 - AluSq SINE Alu -14 299 25 26532 104 107 122 chr3 14148956 14149371 -203887787 - HUERS-P1 LTR ERV1 -1406 4857 4437 2377 77 0 0 chr3 14149371 14149681 -203887477 + AluY SINE Alu 2 311 0 26532 104 107 122 chr3 14149681 14149722 -203887436 - HUERS-P1 LTR ERV1 -1826 4437 4397 690 180 262 0 chr3 14149722 14149894 -203887264 + AluJb SINE Alu 82 298 -14 26532 104 107 122 chr3 14149894 14150016 -203887142 - HUERS-P1 LTR ERV1 -1866 4397 4275 2090 121 0 0 chr3 14150016 14150313 -203886845 - AluSx SINE Alu -15 297 1 26532 104 107 122 chr3 14150313 14150405 -203886753 - HUERS-P1 LTR ERV1 -1988 4275 4183 2364 68 7 0 chr3 14150405 14150713 -203886445 - AluY SINE Alu 0 311 2 26532 104 107 122 chr3 14150713 14151393 -203885765 - HUERS-P1 LTR ERV1 -2080 4183 3494 2059 125 0 10 chr3 14151393 14151571 -203885587 - AluSx SINE Alu -1 311 136 2244 80 3 0 chr3 14151571 14151900 -203885258 - AluY SINE Alu 0 311 1 2059 125 0 10 chr3 14151900 14152034 -203885124 - AluSx SINE Alu -176 136 2 26532 104 107 122 chr3 14152034 14152234 -203884924 - HUERS-P1 LTR ERV1 -2769 3494 3292 2219 107 0 0 chr3 14152234 14152542 -203884616 + AluSx SINE Alu 1 308 -4 26532 104 107 122 chr3 14152542 14154020 -203883138 - HUERS-P1 LTR ERV1 -2971 3292 1793 1659 111 111 0 chr3 14154020 14154290 -203882868 - AluSx SINE Alu -12 300 1 26532 104 107 122 chr3 14154290 14154440 -203882718 - HUERS-P1 LTR ERV1 -4470 1793 1642 2235 96 0 0 chr3 14154440 14154742 -203882416 - AluSx SINE Alu -10 302 1 26532 104 107 122 chr3 14154742 14155045 -203882113 - HUERS-P1 LTR ERV1 -4621 1642 1336 441 0 0 0 chr3 14155045 14155094 -203882064 + (GA)n Simple_repeat Simple_repeat 2 50 0 7077 109 65 27 chr3 14155079 14156093 -203881065 - HUERS-P1 LTR ERV1 -5027 1236 168 26532 104 107 122 chr3 14155094 14156079 -203881079 - HUERS-P1 LTR ERV1 -4927 1336 180 2397 69 0 23 chr3 14156093 14156397 -203880761 + AluY SINE Alu 1 297 -14 7077 109 65 27 chr3 14156397 14156572 -203880586 - HUERS-P1 LTR ERV1 -6095 168 1 3894 101 17 124 chr3 14156572 14156638 -203880520 - LTR8 LTR ERV1 0 691 620 2273 83 4 0 chr3 14156638 14156915 -203880243 + AluSp SINE Alu 3 280 -33 2611 49 0 10 chr3 14156916 14157221 -203879937 + AluY SINE Alu 1 302 -9 3894 101 17 124 chr3 14157221 14157839 -203879319 - LTR8 LTR ERV1 -71 620 95 6806 58 3 0 chr3 14157839 14158909 -203878249 + L1PA6 LINE L1 5079 6151 -3 3894 101 17 124 chr3 14158909 14158995 -203878163 - LTR8 LTR ERV1 -596 95 1 622 246 27 0 chr3 14159001 14159188 -203877970 + L1MC/D LINE L1 5254 5445 -725 * 856 213 127 8 chr3 14159179 14159447 -203877711 + L1ME1 LINE L1 5863 6162 -4 1694 184 4 0 chr3 14159502 14159814 -203877344 + AluJb SINE Alu 9 321 0 282 247 120 10 chr3 14159869 14160021 -203877137 + L1MC/D LINE L1 5428 5588 -609 2128 120 0 10 chr3 14160061 14160240 -203876918 - AluSx SINE Alu 0 312 136 2288 106 0 0 chr3 14160240 14160532 -203876626 - AluSq SINE Alu -21 292 1 2128 120 0 10 chr3 14160532 14160660 -203876498 - AluSx SINE Alu -176 136 8 1440 148 42 101 chr3 14160660 14160715 -203876443 - LTR54 LTR ERV1 -134 376 319 2399 77 0 26 chr3 14160715 14161026 -203876132 - AluY SINE Alu -8 303 1 1440 148 42 101 chr3 14161026 14161101 -203876057 - LTR54 LTR ERV1 -191 319 241 2149 126 0 40 chr3 14161101 14161426 -203875732 + AluSx SINE Alu 1 312 0 1440 148 42 101 chr3 14161426 14161673 -203875485 - LTR54 LTR ERV1 -269 241 19 1721 156 39 39 chr3 14161673 14161981 -203875177 - AluJb SINE Alu -4 308 1 1440 148 42 101 chr3 14161981 14161999 -203875159 - LTR54 LTR ERV1 -491 19 1 1947 154 0 7 chr3 14162074 14162379 -203874779 + AluJo SINE Alu 1 303 -9 632 224 51 67 chr3 14162591 14162904 -203874254 + L1MC5 LINE L1 7624 7931 -30 278 239 11 57 chr3 14162932 14163020 -203874138 + MIR SINE MIR 98 181 -81 2284 86 17 0 chr3 14163055 14163347 -203873811 - AluSg SINE Alu -13 297 1 2196 115 3 0 chr3 14163435 14163731 -203873427 - AluSx SINE Alu -15 297 1 293 263 13 13 chr3 14165239 14165315 -203871843 + MER5A DNA MER1_type 49 124 -65 2254 104 3 7 chr3 14165320 14165628 -203871530 - AluSx SINE Alu -5 307 1 1956 173 0 3 chr3 14165629 14165942 -203871216 - AluJo SINE Alu 0 312 1 420 106 91 0 chr3 14166137 14166203 -203870955 - HY1 scRNA scRNA -39 73 2 2060 118 3 20 chr3 14166214 14166372 -203870786 - AluSx SINE Alu -21 291 139 2337 94 0 3 chr3 14166372 14166669 -203870489 - AluSc SINE Alu -13 296 1 2060 118 3 20 chr3 14166669 14166806 -203870352 - AluSx SINE Alu -173 139 1 1039 162 241 9 chr3 14167022 14167250 -203869908 + AluSg1 SINE Alu 13 293 -16 1187 126 277 0 chr3 14167263 14167494 -203869664 + AluSx SINE Alu 1 295 -7 2226 97 10 3 chr3 14167494 14167792 -203869366 + AluSx SINE Alu 1 300 -12 196 329 52 58 chr3 14168464 14168619 -203868539 + MIR3 SINE MIR 1 154 -54 441 239 22 45 chr3 14168672 14168806 -203868352 + MIR SINE MIR 8 138 -124 263 250 269 0 chr3 14169300 14169408 -203867750 + MER5A DNA MER1_type 53 189 0 2106 97 49 7 chr3 14169635 14169923 -203867235 + AluSx SINE Alu 1 300 -12 1889 154 14 0 chr3 14170136 14170429 -203866729 - AluSx SINE Alu -15 297 1 200 35 35 0 chr3 14170480 14170509 -203866649 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1356 207 74 14 chr3 14170631 14170916 -203866242 - AluJo SINE Alu -6 306 5 283 236 14 28 chr3 14170983 14171055 -203866103 - MER5A DNA MER1_type -87 102 32 362 249 92 31 chr3 14171159 14171259 -203865899 - MIR SINE MIR -6 256 164 2250 90 0 23 chr3 14171259 14171560 -203865598 - AluSg SINE Alu -16 294 1 362 249 92 31 chr3 14171560 14171669 -203865489 - MIR SINE MIR -98 164 37 338 309 62 27 chr3 14172279 14172425 -203864733 + MIR SINE MIR 11 162 -46 1343 154 15 133 chr3 14172619 14172957 -203864201 + AluJb SINE Alu 1 298 -4 2282 96 7 0 chr3 14173153 14173454 -203863704 - AluSx SINE Alu -9 303 1 2292 105 3 7 chr3 14173969 14174273 -203862885 - AluSx SINE Alu -9 303 1 1802 145 84 10 chr3 14174925 14175236 -203861922 - MER1B DNA MER1_type 0 339 6 2091 109 0 4 chr3 14175532 14175808 -203861350 + AluSq SINE Alu 16 290 -23 319 243 215 35 chr3 14176305 14176449 -203860709 + MIR SINE MIR 32 201 -61 389 273 45 9 chr3 14176475 14176585 -203860573 - L2 LINE L2 -8 3305 3192 214 254 0 0 chr3 14176658 14176713 -203860445 - MIR SINE MIR -118 144 90 522 228 103 0 chr3 14177025 14177170 -203859988 - Charlie2 DNA MER1_type -2587 195 36 2549 58 0 13 chr3 14177214 14177525 -203859633 - AluY SINE Alu -4 307 1 2170 87 7 0 chr3 14177526 14177801 -203859357 - AluSx SINE Alu -35 277 1 365 208 47 28 chr3 14177931 14178037 -203859121 - MER103 DNA DNA -9 157 50 3445 85 42 24 chr3 14178204 14178714 -203858444 + L1MA3 LINE L1 5737 6259 -46 2392 87 7 0 chr3 14178714 14179012 -203858146 + AluSg SINE Alu 1 300 -10 3445 85 42 24 chr3 14179012 14179055 -203858103 + L1MA3 LINE L1 6259 6300 -5 1269 173 32 22 chr3 14179076 14179354 -203857804 + L1PA16 LINE L1 5886 6166 0 248 217 47 47 chr3 14179391 14179432 -203857726 + Charlie5 DNA MER1_type 58 98 -2526 2448 65 13 3 chr3 14179432 14179739 -203857419 - AluY SINE Alu -1 310 1 248 217 47 47 chr3 14179739 14179803 -203857355 + Charlie5 DNA MER1_type 97 163 -2461 2047 143 10 0 chr3 14179838 14180145 -203857013 - AluSx SINE Alu -2 310 1 555 172 106 0 chr3 14180152 14180303 -203856855 + Charlie5 DNA MER1_type 2354 2520 -92 310 292 78 62 chr3 14181945 14182176 -203854982 + MIR SINE MIR 18 247 -15 2378 86 0 7 chr3 14182570 14182871 -203854287 + AluSg SINE Alu 1 299 -11 206 362 0 0 chr3 14183448 14183506 -203853652 - MER5A DNA MER1_type -69 120 63 * 230 247 13 52 chr3 14183480 14183557 -203853601 + MER5B DNA MER1_type 102 175 -3 444 293 79 6 chr3 14184950 14185114 -203852044 - MIR SINE MIR -16 246 71 564 233 30 8 chr3 14185229 14185362 -203851796 - FLAM_C SINE Alu -5 138 3 1445 143 0 9 chr3 14185959 14186175 -203850983 - AluSg/x SINE Alu -20 292 79 185 250 0 23 chr3 14186713 14186757 -203850401 + MIR SINE MIR 90 132 -76 316 291 107 0 chr3 14187411 14187514 -203849644 + MIR SINE MIR 56 169 -93 432 82 0 0 chr3 14187629 14187690 -203849468 + (ATG)n Simple_repeat Simple_repeat 1 61 0 257 304 135 30 chr3 14187972 14188202 -203848956 + L1ME LINE L1 5560 5813 -308 904 122 23 0 chr3 14188218 14188349 -203848809 + AluJo SINE Alu 1 134 -178 2432 96 3 0 chr3 14188542 14188854 -203848304 + AluSp SINE Alu 1 313 0 297 274 263 11 chr3 14190218 14190397 -203846761 - MIR SINE MIR -18 244 21 281 323 57 16 chr3 14190505 14190629 -203846529 - MIR SINE MIR -9 253 125 267 280 54 42 chr3 14192277 14192445 -203844713 + L2 LINE L2 2890 3059 -213 292 274 18 35 chr3 14194132 14194245 -203842913 + L2 LINE L2 2716 2826 -488 2294 52 29 0 chr3 14194276 14194576 -203842582 + AluY SINE Alu 1 308 0 207 288 243 0 chr3 14194585 14194696 -203842462 + L2 LINE L2 2922 3059 -213 258 32 0 0 chr3 14194880 14194911 -203842247 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 197 309 117 11 chr3 14195222 14195316 -203841842 - L2 LINE L2 -237 3035 2932 234 0 0 0 chr3 14195385 14195411 -203841747 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 211 284 149 14 chr3 14195493 14195567 -203841591 + MIR SINE MIR 11 94 -168 25 0 0 0 chr3 14196645 14196670 -203840488 + GC_rich Low_complexity Low_complexity 1 25 0 603 272 136 0 chr3 14197577 14197768 -203839390 - MLT1K LTR MaLR -239 349 133 304 265 53 69 chr3 14197768 14197957 -203839201 + MER20B DNA MER1_type 1 186 -597 309 214 36 71 chr3 14200290 14200402 -203836756 - MER103 DNA DNA -50 116 9 2364 94 0 0 chr3 14200986 14201285 -203835873 + AluY SINE Alu 1 299 -12 808 156 0 0 chr3 14203267 14203376 -203833782 + FLAM_C SINE Alu 9 117 -26 400 286 49 79 chr3 14206585 14206788 -203830370 + MIR3 SINE MIR 7 203 -5 253 211 56 14 chr3 14206870 14206941 -203830217 - MER2 DNA MER2_type 0 345 272 729 150 55 123 chr3 14206973 14207071 -203830087 - MER2 DNA MER2_type -140 205 129 1732 185 123 10 chr3 14207071 14207461 -203829697 - Tigger2a DNA MER2_type 0 434 1 729 150 55 123 chr3 14207461 14207582 -203829576 - MER2 DNA MER2_type -216 129 1 284 260 57 51 chr3 14207627 14207865 -203829293 - MLT1K LTR MaLR -149 466 198 321 275 99 47 chr3 14207902 14208073 -203829085 + MIR SINE MIR 18 197 -65 731 206 8 0 chr3 14208074 14208200 -203828958 + FLAM_C SINE Alu 1 127 -16 305 55 0 96 chr3 14208205 14208278 -203828880 + (TGGA)n Simple_repeat Simple_repeat 3 68 0 1961 74 0 49 chr3 14209929 14210213 -203826945 + AluSq SINE Alu 1 270 -43 2298 66 10 13 chr3 14212600 14212902 -203824256 + AluSp SINE Alu 1 301 -12 289 362 53 32 chr3 14213200 14213388 -203823770 + MIR SINE MIR 4 195 -67 1844 116 47 4 chr3 14214521 14214796 -203822362 - AluSg SINE Alu -1 309 23 1453 148 168 0 chr3 14214997 14215253 -203821905 + AluJb SINE Alu 1 299 -13 228 297 14 153 chr3 14216305 14216440 -203820718 - MER5A DNA MER1_type -1 188 90 1861 132 35 14 chr3 14216440 14216729 -203820429 - AluSx SINE Alu -17 295 1 228 297 14 153 chr3 14216729 14216802 -203820356 - MER5A DNA MER1_type -99 90 9 480 293 98 6 chr3 14217058 14217232 -203819926 - MIR SINE MIR 0 262 73 26 30 0 0 chr3 14217482 14217515 -203819643 + GC_rich Low_complexity Low_complexity 1 33 0 223 186 0 34 chr3 14217597 14217656 -203819502 + (CCG)n Simple_repeat Simple_repeat 2 58 0 189 107 0 0 chr3 14219970 14219998 -203817160 + (TTTTC)n Simple_repeat Simple_repeat 5 32 0 * 245 109 22 0 chr3 14219993 14220039 -203817119 + CT-rich Low_complexity Low_complexity 2 48 0 210 318 16 0 chr3 14220130 14220193 -203816965 - L2 LINE L2 -3 3310 3247 1594 234 127 136 chr3 14220194 14220789 -203816369 - L2 LINE L2 -1 3312 2713 2479 80 0 0 chr3 14220789 14221100 -203816058 + AluY SINE Alu 1 311 0 1594 234 127 136 chr3 14221100 14221340 -203815818 - L2 LINE L2 -600 2713 2472 747 235 37 16 chr3 14221340 14221527 -203815631 + AluJo SINE Alu 121 311 -1 1594 234 127 136 chr3 14221527 14221657 -203815501 - L2 LINE L2 -841 2472 2342 1550 192 0 42 chr3 14221657 14221970 -203815188 - AluJo SINE Alu -12 300 1 1594 234 127 136 chr3 14221970 14222360 -203814798 - L2 LINE L2 -971 2342 1799 2382 41 3 7 chr3 14222360 14222652 -203814506 - AluY SINE Alu -20 291 1 1594 234 127 136 chr3 14222652 14222702 -203814456 - L2 LINE L2 -1514 1799 1750 2018 111 27 24 chr3 14222710 14223008 -203814150 + AluSq SINE Alu 1 299 -14 2460 57 0 7 chr3 14223011 14223312 -203813846 + AluY SINE Alu 1 299 -12 284 326 75 14 chr3 14223312 14223459 -203813699 + MIR SINE MIR 47 202 -60 361 249 93 78 chr3 14223462 14223495 -203813663 + MIR SINE MIR 2 33 -229 1911 141 0 10 chr3 14223495 14223793 -203813365 + AluJo SINE Alu 1 295 -17 361 249 93 78 chr3 14223793 14224016 -203813142 + MIR SINE MIR 33 262 0 700 222 0 7 chr3 14224860 14225004 -203812154 - FLAM_C SINE Alu 0 143 1 2357 82 3 0 chr3 14225100 14225404 -203811754 - AluSx SINE Alu -7 305 1 421 35 0 0 chr3 14225620 14225677 -203811481 - AluY SINE Alu -7 305 249 726 233 86 65 chr3 14225748 14225980 -203811178 - MIR SINE MIR -25 237 1 424 200 171 9 chr3 14226612 14226717 -203810441 + L2 LINE L2 3191 3312 -1 635 201 82 0 chr3 14226789 14226948 -203810210 - MIR SINE MIR -1 261 90 1022 124 162 5 chr3 14227346 14227531 -203809627 + AluJb SINE Alu 85 298 -14 2166 97 7 0 chr3 14228960 14229260 -203807898 + AluSx SINE Alu 1 302 -10 1479 154 15 133 chr3 14229456 14229794 -203807364 - AluJb SINE Alu -4 298 1 356 328 55 3 chr3 14229988 14230134 -203807024 - MIR SINE MIR -46 162 11 388 261 82 38 chr3 14230722 14230853 -203806305 + MIR SINE MIR 19 164 -98 2149 102 0 13 chr3 14230853 14231156 -203806002 + AluSg SINE Alu 1 299 -11 388 261 82 38 chr3 14231156 14231254 -203805904 + MIR SINE MIR 164 256 -6 289 236 14 28 chr3 14231358 14231430 -203805728 + MER5A DNA MER1_type 32 102 -87 1378 211 86 11 chr3 14231494 14231774 -203805384 + AluJo SINE Alu 2 302 0 1811 154 14 0 chr3 14231983 14232276 -203804882 + AluSx SINE Alu 1 297 -15 280 153 0 176 chr3 14232459 14232487 -203804671 - MIR SINE MIR -80 182 151 2125 100 28 0 chr3 14232487 14232778 -203804380 - AluSc SINE Alu -10 299 1 280 153 0 176 chr3 14232778 14232834 -203804324 - MIR SINE MIR -111 151 113 1468 234 122 142 chr3 14232876 14232940 -203804218 + L2 LINE L2 1751 1815 -1498 2369 45 3 7 chr3 14232940 14233232 -203803926 + AluY SINE Alu 1 291 -20 1468 234 122 142 chr3 14233232 14233622 -203803536 + L2 LINE L2 1815 2211 -1102 1550 192 0 42 chr3 14233622 14233935 -203803223 + AluJo SINE Alu 1 300 -12 1468 234 122 142 chr3 14233935 14234065 -203803093 + L2 LINE L2 2211 2342 -971 832 183 43 32 chr3 14234065 14234251 -203802907 - AluJo SINE Alu -4 308 121 1468 234 122 142 chr3 14234251 14234495 -203802663 + L2 LINE L2 2342 2589 -724 2524 71 0 0 chr3 14234495 14234805 -203802353 - AluY SINE Alu -1 310 1 1468 234 122 142 chr3 14234805 14235400 -203801758 + L2 LINE L2 2589 3312 -1 210 318 16 0 chr3 14235401 14235464 -203801694 + L2 LINE L2 3247 3310 -3 245 109 22 0 chr3 14235555 14235601 -203801557 + GA-rich Low_complexity Low_complexity 2 48 0 189 107 0 0 chr3 14235596 14235624 -203801534 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 * 223 186 0 34 chr3 14237938 14237997 -203799161 + (CGG)n Simple_repeat Simple_repeat 2 58 0 26 30 0 0 chr3 14238079 14238112 -203799046 + GC_rich Low_complexity Low_complexity 1 33 0 480 293 98 6 chr3 14238362 14238536 -203798622 + MIR SINE MIR 73 262 0 228 297 14 153 chr3 14238792 14238865 -203798293 + MER5A DNA MER1_type 9 90 -99 1861 132 35 14 chr3 14238865 14239154 -203798004 + AluSx SINE Alu 1 295 -17 228 297 14 153 chr3 14239154 14239289 -203797869 + MER5A DNA MER1_type 90 188 -1 1468 148 168 0 chr3 14240338 14240594 -203796564 - AluJb SINE Alu -13 299 1 1844 116 47 4 chr3 14240794 14241069 -203796089 + AluSg SINE Alu 23 309 -1 289 362 53 32 chr3 14242202 14242390 -203794768 - MIR SINE MIR -67 195 4 2298 66 10 13 chr3 14242688 14242990 -203794168 - AluSp SINE Alu -12 301 1 1961 74 0 49 chr3 14245377 14245661 -203791497 - AluSq SINE Alu -43 270 1 305 55 0 96 chr3 14247312 14247385 -203789773 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 731 206 8 0 chr3 14247390 14247516 -203789642 - FLAM_C SINE Alu -16 127 1 310 281 99 47 chr3 14247517 14247688 -203789470 - MIR SINE MIR -65 197 18 284 260 57 51 chr3 14247725 14247963 -203789195 + MLT1K LTR MaLR 198 466 -149 729 150 55 123 chr3 14248008 14248129 -203789029 + MER2 DNA MER2_type 1 102 -243 1732 185 123 10 chr3 14248129 14248519 -203788639 + Tigger2a DNA MER2_type 1 434 0 729 150 55 123 chr3 14248519 14248617 -203788541 + MER2 DNA MER2_type 102 205 -140 283 214 57 0 chr3 14248649 14248719 -203788439 + MER2 DNA MER2_type 272 345 0 400 286 49 79 chr3 14248801 14249004 -203788154 - MIR3 SINE MIR -5 203 7 807 198 0 0 chr3 14252196 14252322 -203784836 - FLAM_C SINE Alu -9 134 9 2258 94 0 0 chr3 14254304 14254603 -203782555 - AluY SINE Alu -12 299 1 281 214 36 71 chr3 14255187 14255299 -203781859 + MER103 DNA DNA 9 116 -50 304 265 53 69 chr3 14257632 14257821 -203779337 - MER20B DNA MER1_type -597 186 1 603 272 136 0 chr3 14257821 14258012 -203779146 + MLT1K LTR MaLR 133 349 -239 25 0 0 0 chr3 14258919 14258944 -203778214 + GC_rich Low_complexity Low_complexity 1 25 0 211 284 149 14 chr3 14260022 14260096 -203777062 - MIR SINE MIR -168 94 11 234 0 0 0 chr3 14260178 14260204 -203776954 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 197 309 117 11 chr3 14260273 14260367 -203776791 + L2 LINE L2 2932 3035 -237 258 32 0 0 chr3 14260678 14260709 -203776449 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 207 288 243 0 chr3 14260893 14261004 -203776154 - L2 LINE L2 -213 3059 2922 2263 55 29 0 chr3 14261013 14261313 -203775845 - AluY SINE Alu 0 308 1 292 274 18 35 chr3 14261344 14261457 -203775701 - L2 LINE L2 -488 2826 2716 267 280 54 42 chr3 14263144 14263312 -203773846 - L2 LINE L2 -213 3059 2890 281 323 57 16 chr3 14264960 14265084 -203772074 + MIR SINE MIR 125 253 -9 297 274 263 11 chr3 14265192 14265371 -203771787 + MIR SINE MIR 21 244 -18 2432 96 3 0 chr3 14266735 14267047 -203770111 - AluSp SINE Alu 0 313 1 904 122 23 0 chr3 14267240 14267371 -203769787 - AluJo SINE Alu -178 134 1 232 309 135 30 chr3 14267387 14267617 -203769541 - L1ME LINE L1 -308 5813 5560 432 82 0 0 chr3 14267899 14267960 -203769198 + (CAT)n Simple_repeat Simple_repeat 1 61 0 316 291 107 0 chr3 14268075 14268178 -203768980 - MIR SINE MIR -93 169 56 185 250 0 23 chr3 14268832 14268876 -203768282 - MIR SINE MIR -76 132 90 1445 143 0 9 chr3 14269414 14269630 -203767528 + AluSg/x SINE Alu 79 292 -20 564 233 30 8 chr3 14270227 14270360 -203766798 + FLAM_C SINE Alu 3 138 -5 444 293 79 6 chr3 14270475 14270639 -203766519 + MIR SINE MIR 71 246 -16 230 247 13 52 chr3 14272032 14272109 -203765049 - MER5B DNA MER1_type -3 175 102 206 362 0 0 chr3 14272083 14272141 -203765017 + MER5A DNA MER1_type 63 120 -69 * 2378 86 0 7 chr3 14272718 14273019 -203764139 - AluSg SINE Alu -11 299 1 310 292 78 62 chr3 14273413 14273644 -203763514 - MIR SINE MIR -15 247 18 555 172 106 0 chr3 14275286 14275437 -203761721 - Charlie5 DNA MER1_type -92 2520 2354 2047 143 10 0 chr3 14275444 14275751 -203761407 + AluSx SINE Alu 1 310 -2 248 217 47 47 chr3 14275786 14275850 -203761308 - Charlie5 DNA MER1_type -2461 163 97 2457 65 13 3 chr3 14275850 14276158 -203761000 + AluY SINE Alu 1 311 0 248 217 47 47 chr3 14276158 14276199 -203760959 - Charlie5 DNA MER1_type -2526 98 58 1269 173 32 22 chr3 14276236 14276514 -203760644 - L1PA16 LINE L1 0 6166 5886 3445 85 42 24 chr3 14276535 14276578 -203760580 - L1MA3 LINE L1 -5 6300 6259 2392 87 7 0 chr3 14276578 14276876 -203760282 - AluSg SINE Alu -10 300 1 3445 85 42 24 chr3 14276876 14277386 -203759772 - L1MA3 LINE L1 -46 6259 5737 365 208 47 28 chr3 14277553 14277659 -203759499 + MER103 DNA DNA 50 157 -9 2170 87 7 0 chr3 14277789 14278064 -203759094 + AluSx SINE Alu 1 277 -35 2549 58 0 13 chr3 14278065 14278376 -203758782 + AluY SINE Alu 1 307 -4 522 228 103 0 chr3 14278420 14278565 -203758593 + Charlie2 DNA MER1_type 36 195 -2587 214 254 0 0 chr3 14278877 14278932 -203758226 + MIR SINE MIR 90 144 -118 389 273 45 9 chr3 14279005 14279115 -203758043 + L2 LINE L2 3192 3305 -8 319 243 215 35 chr3 14279141 14279285 -203757873 - MIR SINE MIR -61 201 32 2091 109 0 4 chr3 14279782 14280058 -203757100 - AluSq SINE Alu -23 290 16 1802 145 84 10 chr3 14280354 14280665 -203756493 + MER1B DNA MER1_type 6 339 0 2292 105 3 7 chr3 14281317 14281621 -203755537 + AluSx SINE Alu 1 303 -9 2274 97 7 0 chr3 14282136 14282436 -203754722 + AluSx SINE Alu 1 302 -10 1343 154 15 133 chr3 14282632 14282970 -203754188 - AluJb SINE Alu -4 298 1 338 309 62 27 chr3 14283164 14283310 -203753848 - MIR SINE MIR -46 162 11 362 249 92 31 chr3 14283920 14284029 -203753129 + MIR SINE MIR 37 138 -124 2250 90 0 23 chr3 14284029 14284330 -203752828 + AluSg SINE Alu 1 294 -16 362 249 92 31 chr3 14284330 14284430 -203752728 + MIR SINE MIR 138 256 -6 283 236 14 28 chr3 14284534 14284606 -203752552 + MER5A DNA MER1_type 32 102 -87 1356 207 74 14 chr3 14284673 14284958 -203752200 + AluJo SINE Alu 5 306 -6 200 35 35 0 chr3 14285080 14285109 -203752049 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1889 154 14 0 chr3 14285160 14285453 -203751705 + AluSx SINE Alu 1 297 -15 2233 97 28 0 chr3 14285666 14285955 -203751203 - AluSc SINE Alu -12 297 1 276 164 0 55 chr3 14285956 14286011 -203751147 - MIR SINE MIR -98 164 113 2299 80 0 10 chr3 14286117 14286406 -203750752 + AluSg SINE Alu 1 286 -24 231 36 0 0 chr3 14286406 14286434 -203750724 + (TA)n Simple_repeat Simple_repeat 2 29 0 411 285 44 61 chr3 14286476 14286704 -203750454 + L1MEc LINE L1 2173 2396 -4000 741 47 16 70 chr3 14286780 14286908 -203750250 - L1PA13 LINE L1 -1 6162 6042 1085 235 30 0 chr3 14287234 14287468 -203749690 + MIR SINE MIR 22 262 0 327 353 41 8 chr3 14287501 14287623 -203749535 - L2 LINE L2 -28 3244 3119 198 349 94 7 chr3 14287988 14288137 -203749021 - L2 LINE L2 -240 3032 2871 382 197 7 132 chr3 14288243 14288318 -203748840 + MIR SINE MIR 77 125 -137 2265 98 6 31 chr3 14288318 14288635 -203748523 - AluSx SINE Alu -3 309 1 382 197 7 132 chr3 14288635 14288711 -203748447 + MIR SINE MIR 125 209 -53 1793 175 3 16 chr3 14288922 14289225 -203747933 - AluJo SINE Alu -13 299 1 270 250 24 113 chr3 14289259 14289383 -203747775 + L2 LINE L2 2935 3047 -225 290 342 0 0 chr3 14289440 14289516 -203747642 + L2 LINE L2 3238 3313 0 2440 93 0 0 chr3 14289600 14289901 -203747257 + AluSx SINE Alu 1 301 -11 1712 163 54 0 chr3 14289960 14290254 -203746904 - AluJb SINE Alu -2 310 1 936 166 96 0 chr3 14290322 14290509 -203746649 + MER3 DNA MER1_type 1 205 -4 253 309 228 0 chr3 14290545 14290668 -203746490 + MIR3 SINE MIR 31 181 -27 294 309 196 33 chr3 14290842 14291130 -203746028 + L2 LINE L2 2738 2978 -335 450 0 0 0 chr3 14291130 14291180 -203745978 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 2246 102 0 0 chr3 14291180 14291463 -203745695 - AluSq SINE Alu -30 283 1 294 309 196 33 chr3 14291463 14291655 -203745503 + L2 LINE L2 2977 3304 -9 2299 125 0 0 chr3 14291659 14291963 -203745195 + AluSx SINE Alu 1 304 -8 398 300 0 0 chr3 14291986 14292076 -203745082 + L1MC4 LINE L1 6614 6703 -1339 392 286 0 11 chr3 14292036 14292127 -203745031 - L1MC4 LINE L1 -1339 6703 6614 * 387 267 0 11 chr3 14292083 14292173 -203744985 + L1MC4 LINE L1 6615 6703 -1339 * 2195 189 35 36 chr3 14292473 14292993 -203744165 - LTR40a LTR ERVL 0 519 1 305 221 39 39 chr3 14293212 14293316 -203743842 + MIR SINE MIR 81 184 -78 934 312 130 24 chr3 14293775 14294590 -203742568 - L2 LINE L2 -99 3214 2248 690 187 0 22 chr3 14294592 14294726 -203742432 + AluJo/FLAM SINE Alu 3 133 -169 2458 84 3 0 chr3 14294726 14295022 -203742136 + AluSp SINE Alu 1 297 -16 672 297 56 25 chr3 14295034 14295394 -203741764 - L2 LINE L2 -649 2665 2295 732 143 110 0 chr3 14295401 14295555 -203741603 + MIR SINE MIR 90 260 -2 216 293 13 0 chr3 14295570 14295645 -203741513 + (TA)n Simple_repeat Simple_repeat 1 76 0 2133 108 52 0 chr3 14297335 14297621 -203739537 - AluSx SINE Alu -11 301 1 451 302 43 0 chr3 14297693 14297832 -203739326 - MIR SINE MIR -92 170 26 808 156 0 0 chr3 14298871 14298980 -203738178 - FLAM_C SINE Alu -26 117 9 2364 94 0 0 chr3 14300964 14301263 -203735895 - AluY SINE Alu -12 299 1 309 214 36 71 chr3 14301847 14301959 -203735199 + MER103 DNA DNA 9 116 -50 304 265 53 69 chr3 14304292 14304481 -203732677 - MER20B DNA MER1_type -597 186 1 579 278 136 0 chr3 14304481 14304672 -203732486 + MLT1K LTR MaLR 133 349 -239 25 0 0 0 chr3 14305579 14305604 -203731554 + GC_rich Low_complexity Low_complexity 1 25 0 211 284 149 14 chr3 14306683 14306757 -203730401 - MIR SINE MIR -168 94 11 234 0 0 0 chr3 14306839 14306865 -203730293 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 197 309 117 11 chr3 14306934 14307028 -203730130 + L2 LINE L2 2932 3035 -237 258 32 0 0 chr3 14307339 14307370 -203729788 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 207 288 243 0 chr3 14307554 14307665 -203729493 - L2 LINE L2 -213 3059 2922 220 36 0 0 chr3 14307674 14307702 -203729456 + (TTTG)n Simple_repeat Simple_repeat 1 92 0 2263 55 29 0 chr3 14307702 14307974 -203729184 - AluY SINE Alu -31 280 1 292 274 18 35 chr3 14308005 14308118 -203729040 - L2 LINE L2 -488 2826 2716 267 280 54 42 chr3 14309805 14309973 -203727185 - L2 LINE L2 -213 3059 2890 281 323 57 16 chr3 14311621 14311745 -203725413 + MIR SINE MIR 125 253 -9 296 313 78 9 chr3 14311853 14311968 -203725190 + MIR SINE MIR 21 143 -119 2432 96 3 0 chr3 14313396 14313708 -203723450 - AluSp SINE Alu 0 313 1 904 122 23 0 chr3 14313901 14314032 -203723126 - AluJo SINE Alu -178 134 1 257 304 135 30 chr3 14314048 14314278 -203722880 - L1ME LINE L1 -308 5813 5560 432 82 0 0 chr3 14314560 14314621 -203722537 + (CAT)n Simple_repeat Simple_repeat 1 61 0 316 291 107 0 chr3 14314736 14314839 -203722319 - MIR SINE MIR -93 169 56 185 250 0 23 chr3 14315493 14315537 -203721621 - MIR SINE MIR -76 132 90 1445 143 0 9 chr3 14316075 14316291 -203720867 + AluSg/x SINE Alu 79 292 -20 564 233 30 8 chr3 14316888 14317021 -203720137 + FLAM_C SINE Alu 3 138 -5 444 293 79 6 chr3 14317136 14317300 -203719858 + MIR SINE MIR 71 246 -16 230 247 13 52 chr3 14318693 14318770 -203718388 - MER5B DNA MER1_type -3 175 102 206 362 0 0 chr3 14318744 14318802 -203718356 + MER5A DNA MER1_type 63 120 -69 * 2378 86 0 7 chr3 14319379 14319680 -203717478 - AluSg SINE Alu -11 299 1 310 292 78 62 chr3 14320074 14320305 -203716853 - MIR SINE MIR -15 247 18 555 172 106 0 chr3 14321947 14322098 -203715060 - Charlie5 DNA MER1_type -92 2520 2354 2012 143 10 3 chr3 14322105 14322413 -203714745 + AluSx SINE Alu 1 310 -2 248 217 47 47 chr3 14322448 14322512 -203714646 - Charlie5 DNA MER1_type -2461 163 97 2448 65 13 3 chr3 14322512 14322819 -203714339 + AluY SINE Alu 1 310 -1 248 217 47 47 chr3 14322819 14322860 -203714298 - Charlie5 DNA MER1_type -2526 98 58 1283 173 32 22 chr3 14322897 14323175 -203713983 - L1PA16 LINE L1 0 6166 5886 2343 88 10 0 chr3 14323239 14323536 -203713622 - AluSg SINE Alu -10 300 1 451 302 43 0 chr3 14323607 14323746 -203713412 - MIR SINE MIR -92 170 26 2349 90 10 3 chr3 14323810 14324110 -203713048 + AluSc SINE Alu 1 302 -7 638 224 0 7 chr3 14324207 14324350 -203712808 + FLAM_C SINE Alu 2 143 0 383 249 93 78 chr3 14325195 14325418 -203711740 - MIR SINE MIR 0 262 33 2005 141 0 10 chr3 14325418 14325716 -203711442 - AluJo SINE Alu -17 295 1 383 249 93 78 chr3 14325716 14325749 -203711409 - MIR SINE MIR -229 33 2 265 307 40 62 chr3 14325749 14325899 -203711259 - MIR SINE MIR -70 192 47 2584 57 0 7 chr3 14325899 14326200 -203710958 - AluY SINE Alu -12 299 1 2128 111 27 24 chr3 14326204 14326502 -203710656 - AluSq SINE Alu -14 299 1 2178 114 10 0 chr3 14326506 14326803 -203710355 - AluSx SINE Alu -12 300 1 406 35 0 0 chr3 14327019 14327076 -203710082 - AluY SINE Alu -7 305 249 715 233 86 65 chr3 14327147 14327379 -203709779 - MIR SINE MIR -25 237 1 413 188 178 10 chr3 14328015 14328116 -203709042 + L2 LINE L2 3195 3312 -1 655 201 82 0 chr3 14328188 14328347 -203708811 - MIR SINE MIR -1 261 90 1075 124 162 5 chr3 14328745 14328930 -203708228 + AluJb SINE Alu 85 298 -14 2466 62 0 3 chr3 14330451 14330743 -203706415 - AluSc SINE Alu -18 291 1 453 258 97 46 chr3 14331179 14331396 -203705762 + MIR SINE MIR 2 229 -33 393 247 17 0 chr3 14334867 14334976 -203702182 + MIR3 SINE MIR 84 196 -12 503 248 45 13 chr3 14336755 14336923 -203700235 + MIR3 SINE MIR 25 197 -48 184 261 43 43 chr3 14337816 14337885 -203699273 + MIR SINE MIR 16 84 -124 1532 61 0 0 chr3 14337915 14338096 -203699062 - AluY SINE Alu -11 300 120 183 280 40 0 chr3 14338404 14338454 -203698704 + L2 LINE L2 3221 3272 0 203 162 0 0 chr3 14339748 14339785 -203697373 + CT-rich Low_complexity Low_complexity 2 38 0 653 255 74 35 chr3 14340637 14340868 -203696290 - MIR SINE MIR -12 250 11 593 249 134 9 chr3 14341164 14341381 -203695777 - MIR SINE MIR -1 261 18 221 333 111 15 chr3 14341552 14341687 -203695471 + MIR SINE MIR 48 195 -67 858 206 126 23 chr3 14342018 14342232 -203694926 + MIR SINE MIR 25 260 -2 2484 77 13 0 chr3 14343265 14343565 -203693593 + AluSc SINE Alu 1 304 -5 491 263 78 39 chr3 14344166 14344257 -203692901 + MIR SINE MIR 10 96 -166 1928 146 36 3 chr3 14344257 14344559 -203692599 + AluJb SINE Alu 1 312 0 491 263 78 39 chr3 14344559 14344672 -203692486 + MIR SINE MIR 96 222 -40 212 323 173 19 chr3 14345536 14345796 -203691362 + L2 LINE L2 2503 2802 -512 440 271 167 21 chr3 14345915 14346196 -203690962 + L2 LINE L2 2951 3272 0 22 0 0 0 chr3 14347455 14347477 -203689681 + GC_rich Low_complexity Low_complexity 1 22 0 273 197 0 0 chr3 14347757 14347823 -203689335 + (CGG)n Simple_repeat Simple_repeat 3 68 0 211 301 0 58 chr3 14348189 14348345 -203688813 + G-rich Low_complexity Low_complexity 3 149 0 212 273 167 0 chr3 14348787 14348853 -203688305 + MIR SINE MIR 69 145 -117 672 244 6 18 chr3 14349146 14349314 -203687844 + MIR SINE MIR 97 262 0 496 278 163 47 chr3 14350134 14350583 -203686575 + L2 LINE L2 1710 2210 -1104 209 343 6 40 chr3 14350594 14350821 -203686337 + GA-rich Low_complexity Low_complexity 1 219 0 939 311 128 28 chr3 14350905 14350916 -203686242 + L2 LINE L2 2236 2244 -1069 2556 83 3 0 chr3 14350916 14351228 -203685930 - AluSp SINE Alu 0 313 1 690 187 0 22 chr3 14351228 14351362 -203685796 - AluJo/FLAM SINE Alu -169 133 3 939 311 128 28 chr3 14351362 14352179 -203684979 + L2 LINE L2 2243 3214 -99 305 221 39 39 chr3 14352638 14352742 -203684416 - MIR SINE MIR -78 184 81 2195 189 35 36 chr3 14352961 14353481 -203683677 + LTR40a LTR ERVL 1 519 0 387 267 0 11 chr3 14353781 14353871 -203683287 - L1MC4 LINE L1 -1339 6703 6615 * 392 286 0 11 chr3 14353827 14353918 -203683240 + L1MC4 LINE L1 6614 6703 -1339 * 398 300 0 0 chr3 14353878 14353968 -203683190 - L1MC4 LINE L1 -1339 6703 6614 2299 125 0 0 chr3 14353991 14354295 -203682863 - AluSx SINE Alu -8 304 1 294 309 196 33 chr3 14354299 14354491 -203682667 - L2 LINE L2 -9 3304 3145 2246 102 0 0 chr3 14354491 14354774 -203682384 + AluSq SINE Alu 1 283 -30 450 0 0 0 chr3 14354774 14354824 -203682334 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 294 309 196 33 chr3 14354824 14355112 -203682046 - L2 LINE L2 -167 3146 2738 253 309 228 0 chr3 14355286 14355409 -203681749 - MIR3 SINE MIR -27 181 31 951 160 96 0 chr3 14355445 14355632 -203681526 - MER3 DNA MER1_type -4 205 1 1712 163 54 0 chr3 14355700 14355994 -203681164 + AluJb SINE Alu 1 310 -2 2440 93 0 0 chr3 14356053 14356354 -203680804 - AluSx SINE Alu -11 301 1 290 342 0 0 chr3 14356438 14356514 -203680644 - L2 LINE L2 0 3313 3238 270 250 24 113 chr3 14356571 14356695 -203680463 - L2 LINE L2 -225 3047 2935 1793 175 3 16 chr3 14356729 14357032 -203680126 + AluJo SINE Alu 1 299 -13 382 197 7 132 chr3 14357243 14357319 -203679839 - MIR SINE MIR -53 209 160 2262 102 6 25 chr3 14357319 14357634 -203679524 + AluSx SINE Alu 1 309 -3 382 197 7 132 chr3 14357634 14357709 -203679449 - MIR SINE MIR -102 160 77 198 349 94 7 chr3 14357815 14357964 -203679194 + L2 LINE L2 2871 3032 -240 327 353 41 8 chr3 14358329 14358451 -203678707 + L2 LINE L2 3119 3244 -28 1085 235 30 0 chr3 14358484 14358718 -203678440 - MIR SINE MIR 0 262 22 743 54 8 70 chr3 14359044 14359173 -203677985 + L1PA13 LINE L1 6042 6162 -1 425 318 79 28 chr3 14359248 14359500 -203677658 - L1MEc LINE L1 -3999 2397 2133 231 36 0 0 chr3 14359519 14359547 -203677611 + (TA)n Simple_repeat Simple_repeat 2 29 0 2367 88 0 0 chr3 14359547 14359832 -203677326 - AluSg1 SINE Alu -24 285 1 649 277 47 47 chr3 14359883 14360136 -203677022 - MIR SINE MIR -5 257 5 852 170 50 0 chr3 14360237 14360396 -203676762 + MER2 DNA MER2_type 1 167 -178 1906 132 24 17 chr3 14360407 14360703 -203676455 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 14360725 14361038 -203676120 + AluSg SINE Alu 1 310 0 297 320 6 22 chr3 14361501 14361679 -203675479 + GA-rich Low_complexity Low_complexity 1 175 0 241 299 7 29 chr3 14361832 14361969 -203675189 + GA-rich Low_complexity Low_complexity 4 137 0 542 90 0 0 chr3 14362028 14362106 -203675052 + Alu SINE Alu 226 303 -9 2503 89 0 0 chr3 14362146 14362448 -203674710 - AluSx SINE Alu -10 302 1 242 264 0 0 chr3 14362753 14362806 -203674352 + L2 LINE L2 3209 3261 -11 330 349 15 0 chr3 14364807 14364939 -203672219 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 14365000 14365116 -203672042 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 14365129 14365229 -203671929 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2558 61 0 0 chr3 14365501 14365797 -203671361 + AluY SINE Alu 1 296 -15 2476 75 0 0 chr3 14366731 14367026 -203670132 - AluY SINE Alu -16 295 1 808 129 0 50 chr3 14367056 14367196 -203669962 + FLAM_C SINE Alu 1 133 0 404 252 28 0 chr3 14367264 14367371 -203669787 - MIR SINE MIR -75 187 78 1912 123 76 4 chr3 14367372 14367649 -203669509 + AluSx SINE Alu 1 297 -15 219 303 30 15 chr3 14368209 14368275 -203668883 - MER91A DNA MER1_type 0 196 130 618 200 77 0 chr3 14368720 14368850 -203668308 - MIR SINE MIR -34 228 89 304 179 0 119 chr3 14368857 14368913 -203668245 + MER116 DNA Mariner 3 47 -33 2249 93 0 13 chr3 14368913 14369213 -203667945 - AluSx SINE Alu -16 296 1 304 179 0 119 chr3 14369213 14369240 -203667918 + MER116 DNA Mariner 47 76 -4 1130 130 0 30 chr3 14369328 14369497 -203667661 - AluSg/x SINE Alu -15 297 134 2304 114 0 7 chr3 14369497 14369805 -203667353 - AluSx SINE Alu -6 306 1 2241 111 0 19 chr3 14369805 14370121 -203667037 - AluSx SINE Alu -2 310 1 197 184 0 161 chr3 14370197 14370284 -203666874 - MIR3 SINE MIR -133 75 3 * 229 303 73 18 chr3 14370256 14370298 -203666860 + L2 LINE L2 2946 2984 -288 2509 71 0 0 chr3 14370298 14370595 -203666563 - AluY SINE Alu -14 297 1 229 303 73 18 chr3 14370595 14370661 -203666497 + L2 LINE L2 2984 3060 -212 184 438 0 0 chr3 14370735 14370815 -203666343 + L2 LINE L2 3111 3190 -82 2341 88 7 10 chr3 14372228 14372535 -203664623 + AluY SINE Alu 1 306 -5 1730 77 0 9 chr3 14372540 14372762 -203664396 + AluSq SINE Alu 1 220 -93 325 114 0 0 chr3 14372763 14372807 -203664351 + AluSc SINE Alu 116 159 -140 699 83 0 28 chr3 14372807 14372915 -203664243 + AluSg/x SINE Alu 206 310 0 2569 68 0 3 chr3 14372926 14373235 -203663923 + AluY SINE Alu 1 308 -3 2484 80 0 6 chr3 14373242 14373554 -203663604 + AluY SINE Alu 1 310 -1 1342 211 73 35 chr3 14373563 14373932 -203663226 + L1MC4 LINE L1 7516 7898 -144 2022 146 0 0 chr3 14374341 14374622 -203662536 + AluSx SINE Alu 1 281 -31 2186 122 10 6 chr3 14374624 14374935 -203662223 + AluSx SINE Alu 1 312 0 242 304 69 65 chr3 14374939 14375186 -203661972 - L1ME4a LINE L1 -187 5934 5687 191 286 0 0 chr3 14375716 14375765 -203661393 - L2 LINE L2 -11 3261 3213 540 284 83 61 chr3 14375769 14375970 -203661188 + MLT1J1 LTR MaLR 1 213 -233 2522 74 0 10 chr3 14375970 14376280 -203660878 - AluY SINE Alu -4 307 1 540 284 83 61 chr3 14376280 14376405 -203660753 + MLT1J1 LTR MaLR 213 334 -112 187 274 53 80 chr3 14376468 14376581 -203660577 - MIR SINE MIR -72 136 27 * 241 299 259 6 chr3 14376537 14376711 -203660447 + MIR SINE MIR 19 236 -26 424 257 118 0 chr3 14376722 14376866 -203660292 + L1ME3A LINE L1 5978 6138 -32 217 299 19 58 chr3 14377824 14377978 -203659180 - L2 LINE L2 -181 3091 2944 2626 56 0 0 chr3 14378283 14378586 -203658572 - AluY SINE Alu -8 303 1 1197 178 82 10 chr3 14378586 14378889 -203658269 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 14378893 14378937 -203658221 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 14378948 14379078 -203658080 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 14379216 14379258 -203657900 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2432 97 0 3 chr3 14379315 14379625 -203657533 - AluSx SINE Alu -3 309 1 242 264 0 0 chr3 14379930 14379983 -203657175 + L2 LINE L2 3209 3261 -11 330 349 15 0 chr3 14381984 14382116 -203655042 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 14382177 14382293 -203654865 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 14382306 14382406 -203654752 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2558 61 0 0 chr3 14382678 14382974 -203654184 + AluY SINE Alu 1 296 -15 2476 75 0 0 chr3 14383910 14384205 -203652953 - AluY SINE Alu -16 295 1 808 129 0 50 chr3 14384235 14384375 -203652783 + FLAM_C SINE Alu 1 133 0 404 252 28 0 chr3 14384443 14384550 -203652608 - MIR SINE MIR -75 187 78 1912 123 76 4 chr3 14384551 14384828 -203652330 + AluSx SINE Alu 1 297 -15 219 303 30 15 chr3 14385388 14385454 -203651704 - MER91A DNA MER1_type 0 196 130 618 200 77 0 chr3 14385899 14386029 -203651129 - MIR SINE MIR -34 228 89 304 179 0 119 chr3 14386036 14386092 -203651066 + MER116 DNA Mariner 3 47 -33 2214 93 0 17 chr3 14386092 14386393 -203650765 - AluSx SINE Alu -16 296 1 304 179 0 119 chr3 14386393 14386420 -203650738 + MER116 DNA Mariner 47 76 -4 1130 130 0 30 chr3 14386508 14386677 -203650481 - AluSg/x SINE Alu -15 295 132 2304 114 0 7 chr3 14386677 14386985 -203650173 - AluSx SINE Alu -6 306 1 2135 119 0 16 chr3 14386985 14387177 -203649981 - AluSx SINE Alu -2 310 123 198 118 0 0 chr3 14387177 14387211 -203649947 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2135 119 0 16 chr3 14387211 14387329 -203649829 - AluSx SINE Alu -189 123 5 1838 173 0 17 chr3 14387550 14387851 -203649307 - AluJo SINE Alu -16 296 1 287 217 17 0 chr3 14387881 14387941 -203649217 - MIR SINE MIR -70 138 78 261 271 54 47 chr3 14388450 14388579 -203648579 - L2 LINE L2 -51 3262 3133 589 341 57 0 chr3 14388589 14388658 -203648500 - MIR SINE MIR -3 259 195 1952 137 0 44 chr3 14388658 14388827 -203648331 - AluSx SINE Alu -11 301 151 2133 91 31 11 chr3 14388827 14389113 -203648045 - AluSx SINE Alu -18 294 3 1952 137 0 44 chr3 14389113 14389258 -203647900 - AluSx SINE Alu -161 151 1 589 341 57 0 chr3 14389258 14389417 -203647741 - MIR SINE MIR -67 195 18 1006 295 167 16 chr3 14389455 14390428 -203646730 - L2 LINE L2 -263 3009 1879 186 143 0 0 chr3 14390522 14390557 -203646601 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 284 284 62 52 chr3 14391843 14392037 -203645121 - L2 LINE L2 -215 3057 2862 353 234 156 16 chr3 14392261 14392389 -203644769 - MIR SINE MIR -111 151 6 929 149 106 72 chr3 14392882 14393090 -203644068 + AluJb SINE Alu 33 247 -65 304 282 113 8 chr3 14393510 14393634 -203643524 - MIR SINE MIR -85 177 41 591 208 28 71 chr3 14393668 14393880 -203643278 + MER3 DNA MER1_type 2 204 -5 220 301 97 44 chr3 14393891 14394004 -203643154 + MIR3 SINE MIR 66 184 -24 207 69 0 0 chr3 14394810 14394839 -203642319 + (A)n Simple_repeat Simple_repeat 1 29 0 427 300 246 29 chr3 14395644 14395924 -203641234 + MER102b DNA MER1_type 1 341 0 406 303 86 0 chr3 14395950 14396112 -203641046 + MIR SINE MIR 31 206 -56 532 264 120 37 chr3 14396283 14396499 -203640659 - MIR SINE MIR -20 242 9 488 320 115 24 chr3 14397770 14398101 -203639057 + L3 LINE CR1 1145 1505 -72 2101 50 0 0 chr3 14398164 14398402 -203638756 + AluY SINE Alu 1 238 -73 1778 89 46 19 chr3 14398413 14398672 -203638486 + AluSq SINE Alu 35 300 -13 2610 54 0 0 chr3 14398672 14398967 -203638191 + AluY SINE Alu 1 295 -16 2558 61 0 0 chr3 14399901 14400197 -203636961 - AluY SINE Alu -15 296 1 317 340 10 0 chr3 14400469 14400569 -203636589 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 311 250 9 0 chr3 14400582 14400698 -203636460 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 330 349 15 0 chr3 14400759 14400891 -203636267 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 242 264 0 0 chr3 14402892 14402945 -203634213 - L2 LINE L2 -11 3261 3209 2503 89 0 0 chr3 14403250 14403552 -203633606 + AluSx SINE Alu 1 302 -10 459 161 0 0 chr3 14403592 14403673 -203633485 - AluJ/FRAM SINE Alu -7 305 225 293 359 20 20 chr3 14404465 14404660 -203632498 + L2 LINE L2 3118 3312 -1 2153 114 6 19 chr3 14404945 14405260 -203631898 + AluSp SINE Alu 3 313 0 2178 108 3 54 chr3 14405264 14405580 -203631578 + AluSp SINE Alu 2 301 -12 732 221 7 0 chr3 14405599 14405744 -203631414 - MIR SINE MIR -12 250 105 340 259 46 56 chr3 14405764 14405872 -203631286 - L2 LINE L2 -49 3223 3117 272 298 62 28 chr3 14405856 14405880 -203631278 + L2 LINE L2 3128 3150 -163 * 2214 131 0 0 chr3 14405880 14406171 -203630987 - AluSq SINE Alu -22 291 1 272 298 62 28 chr3 14406171 14406324 -203630834 + L2 LINE L2 3150 3311 -2 220 376 24 0 chr3 14406428 14406553 -203630605 - L2 LINE L2 -470 2844 2717 2062 105 25 7 chr3 14406698 14406983 -203630175 + AluSx SINE Alu 14 303 -9 1318 213 56 39 chr3 14406991 14407292 -203629866 + L1ME1 LINE L1 5767 6061 -105 1035 182 0 0 chr3 14407292 14407462 -203629696 - FAM SINE Alu -5 170 1 1318 213 56 39 chr3 14407462 14407477 -203629681 + L1ME1 LINE L1 6061 6074 -92 2435 76 0 0 chr3 14407477 14407768 -203629390 - AluY SINE Alu -20 291 1 1318 213 56 39 chr3 14407768 14407807 -203629351 + L1ME1 LINE L1 6074 6129 -37 215 261 57 11 chr3 14408086 14408174 -203628984 - L2 LINE L2 -1077 2237 2146 472 194 20 0 chr3 14409704 14409802 -203627356 - MIR SINE MIR -32 230 131 580 293 0 7 chr3 14409831 14409978 -203627180 - MIR SINE MIR -106 156 11 384 316 130 9 chr3 14410139 14410354 -203626804 + MIR SINE MIR 2 242 -20 661 267 21 69 chr3 14411096 14411336 -203625822 + MIR SINE MIR 30 259 -3 249 336 80 8 chr3 14411351 14411476 -203625682 - L2 LINE L2 -1 3312 3179 211 246 46 31 chr3 14411859 14411924 -203625234 - L2 LINE L2 -250 3022 2957 2084 121 3 3 chr3 14412850 14413156 -203624002 + AluSx SINE Alu 1 306 -6 1904 132 0 7 chr3 14413161 14413441 -203623717 + AluSx SINE Alu 16 293 -19 2409 66 0 0 chr3 14413441 14413744 -203623414 + AluY SINE Alu 1 303 -8 427 257 118 0 chr3 14415161 14415305 -203621853 - L1ME3A LINE L1 -32 6138 5978 257 299 259 6 chr3 14415316 14415490 -203621668 - MIR SINE MIR -26 236 19 195 292 46 85 chr3 14415446 14415576 -203621582 + MIR SINE MIR 27 151 -57 * 593 297 73 52 chr3 14415622 14415747 -203621411 - MLT1J1 LTR MaLR -112 334 213 2373 74 0 10 chr3 14415747 14416057 -203621101 + AluY SINE Alu 1 307 -4 593 297 73 52 chr3 14416057 14416258 -203620900 - MLT1J1 LTR MaLR -233 213 1 198 286 0 0 chr3 14416262 14416311 -203620847 + L2 LINE L2 3213 3261 -11 283 313 54 71 chr3 14416825 14417092 -203620066 + L1ME4a LINE L1 5670 5931 -190 2221 109 3 0 chr3 14417092 14417404 -203619754 - AluSq SINE Alu 0 313 1 283 313 54 71 chr3 14417404 14417472 -203619686 + L1ME4a LINE L1 5931 5999 -122 24 32 0 0 chr3 14417496 14417527 -203619631 + AT_rich Low_complexity Low_complexity 1 31 0 242 267 50 75 chr3 14418046 14418166 -203618992 + MER5B DNA MER1_type 7 123 -55 2380 65 0 7 chr3 14418185 14418492 -203618666 - AluY SINE Alu -6 305 1 811 110 0 0 chr3 14418543 14418652 -203618506 + AluSp/q SINE Alu 176 284 -29 406 196 28 9 chr3 14418652 14418759 -203618399 - L1MB2 LINE L1 -16 6155 6047 240 280 10 0 chr3 14418784 14418884 -203618274 - L1MC4 LINE L1 -1 8041 7941 1225 102 0 0 chr3 14419181 14419347 -203617811 - AluSg/x SINE Alu -14 296 131 508 325 93 0 chr3 14419502 14419696 -203617462 - MIR SINE MIR 0 262 51 1797 148 20 10 chr3 14419850 14420155 -203617003 + AluJo SINE Alu 1 308 -4 256 347 75 0 chr3 14420187 14420334 -203616824 + MIR3 SINE MIR 40 197 -11 429 250 191 0 chr3 14420481 14420633 -203616525 + MIR SINE MIR 11 191 -71 219 125 0 0 chr3 14420649 14420689 -203616469 + (TG)n Simple_repeat Simple_repeat 2 41 0 746 175 8 0 chr3 14420702 14420822 -203616336 - FLAM_C SINE Alu -12 121 1 755 118 8 39 chr3 14420833 14420844 -203616314 - L1MC1 LINE L1 0 6333 6323 1622 168 35 3 chr3 14420844 14421129 -203616029 - AluJo SINE Alu -18 294 1 755 118 8 39 chr3 14421129 14421244 -203615914 - L1MC1 LINE L1 -10 6323 6211 443 317 76 51 chr3 14422168 14422321 -203614837 - MLT1L LTR MaLR -10 605 457 1236 33 26 0 chr3 14422321 14422473 -203614685 - L1PA5 LINE L1 0 6154 5999 443 317 76 51 chr3 14422473 14422749 -203614409 - MLT1L LTR MaLR -158 457 176 187 311 0 14 chr3 14423018 14423092 -203614066 - L2 LINE L2 -213 3059 2987 913 303 133 25 chr3 14423107 14423579 -203613579 + MLT1K LTR MaLR 56 578 -10 499 201 148 58 chr3 14423807 14423996 -203613162 - MIR SINE MIR -26 236 31 416 235 41 0 chr3 14424010 14424108 -203613050 - MER91C DNA MER1_type -38 102 1 276 369 76 0 chr3 14424378 14424535 -203612623 - MIR SINE MIR -14 248 80 2579 48 0 0 chr3 14425297 14425608 -203611550 + AluY SINE Alu 1 311 0 318 285 180 48 chr3 14425627 14425933 -203611225 - L2 LINE L2 -159 3113 2763 791 181 30 91 chr3 14425933 14426047 -203611111 + MER5A DNA MER1_type 1 99 -90 2198 95 7 0 chr3 14426047 14426342 -203610816 + AluSx SINE Alu 1 297 -15 791 181 30 91 chr3 14426342 14426426 -203610732 + MER5A DNA MER1_type 99 187 -2 318 285 180 48 chr3 14426426 14426467 -203610691 - L2 LINE L2 -509 2763 2729 1918 108 38 14 chr3 14426718 14427006 -203610152 - AluSx SINE Alu -4 308 14 599 317 37 17 chr3 14427034 14427341 -203609817 - L1ME LINE L1 -422 5699 5373 318 256 174 12 chr3 14427349 14427521 -203609637 - L1ME LINE L1 -801 5345 5146 2154 115 3 0 chr3 14427553 14427858 -203609300 - AluSx SINE Alu -6 306 1 1457 166 3 48 chr3 14427992 14428305 -203608853 + AluJb SINE Alu 13 312 0 2179 79 0 52 chr3 14428411 14428739 -203608419 - AluY SINE Alu 0 311 1 1830 131 0 0 chr3 14428741 14429000 -203608158 - AluSx SINE Alu -13 299 41 305 192 26 13 chr3 14429073 14429151 -203608007 + L1ME4a LINE L1 5946 6024 -97 244 228 38 25 chr3 14429600 14429679 -203607479 + MLT1K LTR MaLR 497 576 -12 2297 87 7 3 chr3 14429869 14430179 -203606979 + AluSx SINE Alu 1 311 -1 313 313 90 0 chr3 14430456 14430590 -203606568 - MIR SINE MIR -31 231 86 2001 139 13 3 chr3 14430662 14431012 -203606146 + AluJo SINE Alu 1 353 0 278 290 93 0 chr3 14431728 14431835 -203605323 + MIR SINE MIR 27 143 -119 227 250 0 0 chr3 14432719 14432783 -203604375 + (TG)n Simple_repeat Simple_repeat 2 65 0 180 77 0 0 chr3 14433960 14433986 -203603172 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 224 220 44 11 chr3 14434049 14434140 -203603018 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 573 279 118 60 chr3 14434630 14435210 -203601948 - L2 LINE L2 -45 3227 2612 298 289 240 0 chr3 14435388 14435492 -203601666 - MER5A DNA MER1_type 0 189 61 250 247 68 14 chr3 14435505 14435578 -203601580 - MER5A DNA MER1_type -82 107 31 1310 217 173 8 chr3 14435610 14435974 -203601184 - MLT1K LTR MaLR -43 545 122 325 299 31 0 chr3 14436303 14436400 -203600758 + MIR SINE MIR 89 188 -74 2191 80 28 0 chr3 14436748 14437034 -203600124 - AluSx SINE Alu -14 298 5 269 261 15 0 chr3 14437057 14437122 -203600036 - MIR SINE MIR -85 123 58 1636 83 4 18 chr3 14437146 14437375 -203599783 + AluSp SINE Alu 88 313 0 2040 108 3 54 chr3 14437379 14437695 -203599463 + AluSp SINE Alu 2 301 -12 736 221 7 0 chr3 14437714 14437859 -203599299 - MIR SINE MIR -12 250 105 328 259 46 56 chr3 14437879 14437987 -203599171 - L2 LINE L2 -49 3223 3117 2111 120 0 0 chr3 14437995 14438286 -203598872 - AluSq SINE Alu -22 291 1 1021 152 11 43 chr3 14438567 14438751 -203598407 - FAM SINE Alu -7 42 1 228 266 16 0 chr3 14439137 14439201 -203597957 + MIR SINE MIR 79 143 -119 259 248 25 93 chr3 14439296 14439325 -203597833 - L1ME4a LINE L1 -1 6120 6091 1819 115 38 54 chr3 14439325 14439639 -203597519 + AluSq SINE Alu 1 309 -4 259 248 25 93 chr3 14439639 14439770 -203597388 - L1ME4a LINE L1 -30 6091 5971 541 293 87 5 chr3 14439775 14439983 -203597175 + MIR SINE MIR 20 244 -18 181 194 16 16 chr3 14440587 14440649 -203596509 + CT-rich Low_complexity Low_complexity 1 62 0 1056 235 81 46 chr3 14440671 14441105 -203596053 - L2 LINE L2 -20 3293 2845 2305 88 0 10 chr3 14441729 14442036 -203595122 - AluSg1 SINE Alu -5 304 1 852 335 82 17 chr3 14442862 14443067 -203594091 - L2 LINE L2 -407 2907 2717 2155 121 0 0 chr3 14443067 14443365 -203593793 + AluSx SINE Alu 1 298 -14 852 335 82 17 chr3 14443365 14443735 -203593423 - L2 LINE L2 -597 2717 2295 725 143 110 0 chr3 14443742 14443896 -203593262 + MIR SINE MIR 90 260 -2 216 293 13 0 chr3 14443911 14443986 -203593172 + (TA)n Simple_repeat Simple_repeat 1 76 0 2004 108 52 0 chr3 14445676 14445962 -203591196 - AluSx SINE Alu -11 301 1 455 318 47 0 chr3 14446025 14446173 -203590985 - MIR SINE MIR -82 180 26 2211 90 10 3 chr3 14446237 14446537 -203590621 + AluSc SINE Alu 1 302 -7 696 224 0 7 chr3 14446634 14446777 -203590381 + FLAM_C SINE Alu 2 143 0 359 245 93 78 chr3 14447621 14447844 -203589314 - MIR SINE MIR 0 262 33 1880 141 0 10 chr3 14447844 14448142 -203589016 - AluJo SINE Alu -17 295 1 359 245 93 78 chr3 14448142 14448175 -203588983 - MIR SINE MIR -229 33 2 270 326 75 14 chr3 14448178 14448325 -203588833 - MIR SINE MIR -60 202 47 2437 57 0 7 chr3 14448325 14448626 -203588532 - AluY SINE Alu -12 299 1 1998 111 27 24 chr3 14448629 14448927 -203588231 - AluSq SINE Alu -14 299 1 2051 114 10 0 chr3 14448931 14449228 -203587930 - AluSx SINE Alu -12 300 1 428 35 0 0 chr3 14449444 14449501 -203587657 - AluY SINE Alu -7 305 249 716 233 86 65 chr3 14449572 14449804 -203587354 - MIR SINE MIR -25 237 1 414 188 178 10 chr3 14450440 14450541 -203586617 + L2 LINE L2 3195 3312 -1 646 201 82 0 chr3 14450613 14450772 -203586386 - MIR SINE MIR -1 261 90 998 124 162 5 chr3 14451170 14451355 -203585803 + AluJb SINE Alu 85 298 -14 2329 62 0 3 chr3 14452876 14453168 -203583990 - AluSc SINE Alu -18 291 1 462 313 65 14 chr3 14453604 14453821 -203583337 + MIR SINE MIR 2 229 -33 397 247 17 0 chr3 14457292 14457401 -203579757 + MIR3 SINE MIR 84 196 -12 510 248 45 13 chr3 14459180 14459348 -203577810 + MIR3 SINE MIR 25 197 -48 191 261 43 43 chr3 14460241 14460310 -203576848 + MIR SINE MIR 16 84 -124 1532 61 0 0 chr3 14460340 14460521 -203576637 - AluY SINE Alu -11 300 120 183 280 40 0 chr3 14460829 14460879 -203576279 + L2 LINE L2 3221 3272 0 203 162 0 0 chr3 14462173 14462210 -203574948 + CT-rich Low_complexity Low_complexity 2 38 0 653 255 74 35 chr3 14463062 14463293 -203573865 - MIR SINE MIR -12 250 11 593 249 134 9 chr3 14463589 14463806 -203573352 - MIR SINE MIR -1 261 18 221 333 111 15 chr3 14463977 14464112 -203573046 + MIR SINE MIR 48 195 -67 858 206 126 23 chr3 14464443 14464657 -203572501 + MIR SINE MIR 25 260 -2 2475 77 13 0 chr3 14465690 14465989 -203571169 + AluSc SINE Alu 1 303 -6 491 263 78 39 chr3 14466590 14466681 -203570477 + MIR SINE MIR 10 96 -166 1928 146 36 3 chr3 14466681 14466983 -203570175 + AluJb SINE Alu 1 312 0 491 263 78 39 chr3 14466983 14467096 -203570062 + MIR SINE MIR 96 222 -40 212 323 173 19 chr3 14467960 14468220 -203568938 + L2 LINE L2 2503 2802 -512 440 271 167 21 chr3 14468339 14468620 -203568538 + L2 LINE L2 2951 3272 0 22 0 0 0 chr3 14469879 14469901 -203567257 + GC_rich Low_complexity Low_complexity 1 22 0 273 197 0 0 chr3 14470181 14470247 -203566911 + (CGG)n Simple_repeat Simple_repeat 3 68 0 211 301 0 58 chr3 14470613 14470769 -203566389 + G-rich Low_complexity Low_complexity 3 149 0 212 273 167 0 chr3 14471211 14471277 -203565881 + MIR SINE MIR 69 145 -117 655 250 6 18 chr3 14471570 14471738 -203565420 + MIR SINE MIR 97 262 0 496 278 163 47 chr3 14472558 14473007 -203564151 + L2 LINE L2 1710 2210 -1104 209 343 6 40 chr3 14473018 14473245 -203563913 + GA-rich Low_complexity Low_complexity 1 219 0 939 311 128 28 chr3 14473329 14473340 -203563818 + L2 LINE L2 2236 2244 -1069 2556 83 3 0 chr3 14473340 14473652 -203563506 - AluSp SINE Alu 0 313 1 690 187 0 22 chr3 14473652 14473786 -203563372 - AluJo/FLAM SINE Alu -169 133 3 939 311 128 28 chr3 14473786 14474603 -203562555 + L2 LINE L2 2243 3214 -99 305 221 39 39 chr3 14475062 14475166 -203561992 - MIR SINE MIR -78 184 81 2195 189 35 36 chr3 14475385 14475905 -203561253 + LTR40a LTR ERVL 1 519 0 311 152 76 15 chr3 14476206 14476272 -203560886 - L1MCa LINE L1 -4362 2064 1995 * 387 277 40 0 chr3 14476246 14476347 -203560811 - L1MC4 LINE L1 -1323 6999 6895 369 326 0 0 chr3 14476306 14476395 -203560763 + L1MC4 LINE L1 6614 6702 -1340 * 336 238 0 0 chr3 14476366 14476429 -203560729 - L1MC4 LINE L1 -1339 6703 6641 * 2345 105 0 0 chr3 14476437 14476741 -203560417 - AluSx SINE Alu -8 304 1 8752 107 73 27 chr3 14476742 14477044 -203560114 - HUERS-P1 LTR ERV1 -4717 1546 1259 495 0 0 0 chr3 14477044 14477099 -203560059 + (GA)n Simple_repeat Simple_repeat 2 56 0 8752 107 73 27 chr3 14477099 14478098 -203559060 - HUERS-P1 LTR ERV1 -5004 1259 166 2397 69 0 23 chr3 14478098 14478402 -203558756 + AluY SINE Alu 1 297 -14 8752 107 73 27 chr3 14478402 14478577 -203558581 - HUERS-P1 LTR ERV1 -6097 166 1 3894 101 17 124 chr3 14478577 14478643 -203558515 - LTR8 LTR ERV1 0 691 620 2273 83 4 0 chr3 14478643 14478920 -203558238 + AluSp SINE Alu 3 280 -33 2611 49 0 10 chr3 14478921 14479226 -203557932 + AluY SINE Alu 1 302 -9 3894 101 17 124 chr3 14479226 14479844 -203557314 - LTR8 LTR ERV1 -71 620 95 6806 58 3 0 chr3 14479844 14480914 -203556244 + L1PA6 LINE L1 5079 6151 -3 3894 101 17 124 chr3 14480914 14481000 -203556158 - LTR8 LTR ERV1 -596 95 1 622 246 27 0 chr3 14481006 14481193 -203555965 + L1MC/D LINE L1 5254 5445 -725 * 856 213 127 8 chr3 14481184 14481452 -203555706 + L1ME1 LINE L1 5863 6162 -4 1701 184 4 0 chr3 14481507 14481813 -203555345 + AluJo SINE Alu 9 315 0 282 247 120 10 chr3 14481868 14482020 -203555138 + L1MC/D LINE L1 5428 5588 -609 2128 120 0 10 chr3 14482060 14482239 -203554919 - AluSx SINE Alu 0 312 136 2249 113 0 0 chr3 14482239 14482531 -203554627 - AluSq SINE Alu -21 292 1 2128 120 0 10 chr3 14482531 14482659 -203554499 - AluSx SINE Alu -176 136 8 1440 148 42 101 chr3 14482659 14482714 -203554444 - LTR54 LTR ERV1 -134 376 319 2399 77 0 26 chr3 14482714 14483025 -203554133 - AluY SINE Alu -8 303 1 1440 148 42 101 chr3 14483025 14483100 -203554058 - LTR54 LTR ERV1 -191 319 241 2149 126 0 40 chr3 14483100 14483425 -203553733 + AluSx SINE Alu 1 312 0 1440 148 42 101 chr3 14483425 14483672 -203553486 - LTR54 LTR ERV1 -269 241 19 1721 156 39 39 chr3 14483672 14483980 -203553178 - AluJb SINE Alu -4 308 1 1440 148 42 101 chr3 14483980 14483998 -203553160 - LTR54 LTR ERV1 -491 19 1 1931 157 0 7 chr3 14484073 14484378 -203552780 + AluJo SINE Alu 1 303 -9 632 224 51 67 chr3 14484590 14484903 -203552255 + L1MC5 LINE L1 7624 7931 -30 278 239 11 57 chr3 14484931 14485019 -203552139 + MIR SINE MIR 98 181 -81 2284 86 17 0 chr3 14485054 14485346 -203551812 - AluSg SINE Alu -13 297 1 2196 115 3 0 chr3 14485434 14485730 -203551428 - AluSx SINE Alu -15 297 1 293 263 13 13 chr3 14487238 14487314 -203549844 + MER5A DNA MER1_type 49 124 -65 2245 104 3 7 chr3 14487319 14487626 -203549532 - AluSx SINE Alu -6 306 1 1956 173 0 3 chr3 14487627 14487940 -203549218 - AluJo SINE Alu 0 312 1 420 106 91 0 chr3 14488135 14488201 -203548957 - HY1 scRNA scRNA -39 73 2 2060 118 3 20 chr3 14488212 14488370 -203548788 - AluSx SINE Alu -21 291 139 2337 94 0 3 chr3 14488370 14488667 -203548491 - AluSc SINE Alu -13 296 1 2060 118 3 20 chr3 14488667 14488804 -203548354 - AluSx SINE Alu -173 139 1 1039 162 241 9 chr3 14489020 14489248 -203547910 + AluSg1 SINE Alu 13 293 -16 1187 126 277 0 chr3 14489261 14489492 -203547666 + AluSx SINE Alu 1 295 -7 2226 97 10 3 chr3 14489492 14489790 -203547368 + AluSx SINE Alu 1 300 -12 196 329 52 58 chr3 14490462 14490617 -203546541 + MIR3 SINE MIR 1 154 -54 441 239 22 45 chr3 14490670 14490804 -203546354 + MIR SINE MIR 8 138 -124 263 250 269 0 chr3 14491298 14491406 -203545752 + MER5A DNA MER1_type 53 189 0 2205 87 45 7 chr3 14491633 14491922 -203545236 + AluSx SINE Alu 1 300 -12 302 0 0 0 chr3 14491922 14491956 -203545202 + HUERS-P1 LTR ERV1 1535 1568 -4695 2066 122 29 52 chr3 14491971 14492072 -203545086 + HUERS-P1 LTR ERV1 1533 1635 -4628 1800 111 111 0 chr3 14492072 14492342 -203544816 + AluSx SINE Alu 1 300 -12 2066 122 29 52 chr3 14492342 14492625 -203544533 + HUERS-P1 LTR ERV1 1635 1908 -4355 673 146 19 19 chr3 14492625 14492783 -203544375 + GA-rich Low_complexity Low_complexity 1 158 0 5577 166 45 12 chr3 14492785 14493820 -203543338 + HUERS-P1 LTR ERV1 2405 3474 -4063 2350 110 0 0 chr3 14493820 14494128 -203543030 - AluSx SINE Alu -4 308 1 296 265 53 69 chr3 14495829 14496018 -203541140 - MER20B DNA MER1_type -597 186 1 603 272 136 0 chr3 14496018 14496209 -203540949 + MLT1K LTR MaLR 133 349 -239 25 0 0 0 chr3 14497116 14497141 -203540017 + GC_rich Low_complexity Low_complexity 1 25 0 211 284 149 14 chr3 14498219 14498293 -203538865 - MIR SINE MIR -168 94 11 234 0 0 0 chr3 14498375 14498401 -203538757 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 197 309 117 11 chr3 14498470 14498564 -203538594 + L2 LINE L2 2932 3035 -237 258 32 0 0 chr3 14498875 14498906 -203538252 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 207 288 243 0 chr3 14499090 14499201 -203537957 - L2 LINE L2 -213 3059 2922 2293 52 29 0 chr3 14499210 14499510 -203537648 - AluY SINE Alu 0 308 1 292 274 18 35 chr3 14499541 14499654 -203537504 - L2 LINE L2 -488 2826 2716 267 280 54 42 chr3 14501340 14501508 -203535650 - L2 LINE L2 -213 3059 2890 281 323 57 16 chr3 14503156 14503280 -203533878 + MIR SINE MIR 125 253 -9 297 274 263 11 chr3 14503388 14503567 -203533591 + MIR SINE MIR 21 244 -18 2432 96 3 0 chr3 14504932 14505244 -203531914 - AluSp SINE Alu 0 313 1 904 122 23 0 chr3 14505437 14505568 -203531590 - AluJo SINE Alu -178 134 1 257 304 135 30 chr3 14505584 14505814 -203531344 - L1ME LINE L1 -308 5813 5560 359 67 0 33 chr3 14506096 14506156 -203531002 + (CAT)n Simple_repeat Simple_repeat 1 58 0 316 291 107 0 chr3 14506271 14506374 -203530784 - MIR SINE MIR -93 169 56 185 250 0 23 chr3 14507028 14507072 -203530086 - MIR SINE MIR -76 132 90 1445 143 0 9 chr3 14507610 14507826 -203529332 + AluSg/x SINE Alu 79 292 -20 564 233 30 8 chr3 14508423 14508556 -203528602 + FLAM_C SINE Alu 3 138 -5 444 293 79 6 chr3 14508671 14508835 -203528323 + MIR SINE MIR 71 246 -16 230 247 13 52 chr3 14510228 14510305 -203526853 - MER5B DNA MER1_type -3 175 102 206 362 0 0 chr3 14510279 14510337 -203526821 + MER5A DNA MER1_type 63 120 -69 * 2378 86 0 7 chr3 14510914 14511215 -203525943 - AluSg SINE Alu -11 299 1 310 292 78 62 chr3 14511609 14511840 -203525318 - MIR SINE MIR -15 247 18 555 172 106 0 chr3 14513482 14513633 -203523525 - Charlie5 DNA MER1_type -92 2520 2354 2047 143 10 0 chr3 14513640 14513947 -203523211 + AluSx SINE Alu 1 310 -2 248 217 47 47 chr3 14513982 14514046 -203523112 - Charlie5 DNA MER1_type -2461 163 97 2448 65 13 3 chr3 14514046 14514353 -203522805 + AluY SINE Alu 1 310 -1 248 217 47 47 chr3 14514353 14514394 -203522764 - Charlie5 DNA MER1_type -2526 98 58 1269 173 32 22 chr3 14514431 14514709 -203522449 - L1PA16 LINE L1 0 6166 5886 3445 85 42 24 chr3 14514730 14514773 -203522385 - L1MA3 LINE L1 -5 6300 6259 2392 87 7 0 chr3 14514773 14515071 -203522087 - AluSg SINE Alu -10 300 1 3445 85 42 24 chr3 14515071 14515581 -203521577 - L1MA3 LINE L1 -46 6259 5737 365 208 47 28 chr3 14515748 14515854 -203521304 + MER103 DNA DNA 50 157 -9 2135 87 7 4 chr3 14515984 14516260 -203520898 + AluSx SINE Alu 1 277 -35 2548 57 0 16 chr3 14516261 14516577 -203520581 + AluY SINE Alu 1 311 0 522 228 103 0 chr3 14516622 14516767 -203520391 + Charlie2 DNA MER1_type 36 195 -2587 214 254 0 0 chr3 14517079 14517134 -203520024 + MIR SINE MIR 90 144 -118 389 273 45 9 chr3 14517207 14517317 -203519841 + L2 LINE L2 3192 3305 -8 319 243 215 35 chr3 14517343 14517487 -203519671 - MIR SINE MIR -61 201 32 2091 109 0 4 chr3 14517984 14518260 -203518898 - AluSq SINE Alu -23 290 16 1802 145 84 10 chr3 14518556 14518867 -203518291 + MER1B DNA MER1_type 6 339 0 2190 105 0 7 chr3 14519536 14519831 -203517327 + AluSg SINE Alu 16 308 -2 2415 88 3 0 chr3 14519892 14520189 -203516969 - AluSg SINE Alu -12 298 1 633 283 62 52 chr3 14520787 14520907 -203516251 - MER113 DNA MER1_type? -5 516 399 2557 93 0 0 chr3 14520907 14521219 -203515939 - AluSx SINE Alu 0 312 1 633 283 62 52 chr3 14521219 14521423 -203515735 - MER113 DNA MER1_type? -122 399 189 2142 130 0 0 chr3 14521423 14521715 -203515443 + AluSq SINE Alu 1 292 -21 439 303 119 18 chr3 14522129 14522347 -203514811 + MIR SINE MIR 20 259 -3 1023 137 137 19 chr3 14522357 14522406 -203514752 + MER46A DNA MER2_type 1 43 -2688 2190 138 0 0 chr3 14522406 14522703 -203514455 + AluSx SINE Alu 1 297 -15 1023 137 137 19 chr3 14522703 14522864 -203514294 + MER46A DNA MER2_type 43 236 0 25 0 0 0 chr3 14523160 14523185 -203513973 + AT_rich Low_complexity Low_complexity 1 25 0 2312 93 0 0 chr3 14523240 14523555 -203513603 - AluSc SINE Alu 0 315 1 1677 159 35 14 chr3 14523557 14523847 -203513311 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 14524010 14524033 -203513125 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 14524662 14524723 -203512435 + MER20 DNA MER1_type 3 65 -154 448 213 176 15 chr3 14524766 14524902 -203512256 + MER20 DNA MER1_type 57 214 -5 218 307 139 0 chr3 14524942 14525043 -203512115 - L2 LINE L2 0 3272 3158 2508 79 0 0 chr3 14525186 14525489 -203511669 - AluY SINE Alu -8 303 1 2153 109 0 7 chr3 14525745 14526038 -203511120 - AluSx SINE Alu -21 291 1 2194 141 0 0 chr3 14526038 14526336 -203510822 - AluSx SINE Alu -14 298 1 293 275 42 49 chr3 14526347 14526489 -203510669 + L2 LINE L2 3171 3311 -2 220 376 24 0 chr3 14526593 14526718 -203510440 - L2 LINE L2 -470 2844 2717 2162 99 25 3 chr3 14526863 14527147 -203510011 + AluSx SINE Alu 14 303 -9 1318 213 56 39 chr3 14527155 14527456 -203509702 + L1ME1 LINE L1 5767 6061 -105 1035 182 0 0 chr3 14527456 14527626 -203509532 - FAM SINE Alu -5 170 1 1318 213 56 39 chr3 14527626 14527641 -203509517 + L1ME1 LINE L1 6061 6074 -92 2435 76 0 0 chr3 14527641 14527932 -203509226 - AluY SINE Alu -20 291 1 1318 213 56 39 chr3 14527932 14527971 -203509187 + L1ME1 LINE L1 6074 6129 -37 215 261 57 11 chr3 14528250 14528338 -203508820 - L2 LINE L2 -1077 2237 2146 464 194 20 0 chr3 14529868 14529966 -203507192 - MIR SINE MIR -32 230 131 574 293 0 7 chr3 14529995 14530142 -203507016 - MIR SINE MIR -106 156 11 393 312 130 9 chr3 14530303 14530518 -203506640 + MIR SINE MIR 2 242 -20 660 267 21 69 chr3 14531260 14531500 -203505658 + MIR SINE MIR 30 259 -3 247 336 80 8 chr3 14531515 14531640 -203505518 - L2 LINE L2 -1 3312 3179 214 246 46 31 chr3 14532023 14532088 -203505070 - L2 LINE L2 -250 3022 2957 2211 121 3 3 chr3 14533014 14533320 -203503838 + AluSx SINE Alu 1 306 -6 2024 132 0 7 chr3 14533325 14533606 -203503552 + AluSx SINE Alu 16 294 -18 2578 63 0 0 chr3 14533606 14533908 -203503250 + AluY SINE Alu 1 303 -8 217 299 19 58 chr3 14534213 14534367 -203502791 + L2 LINE L2 2944 3091 -181 424 257 118 0 chr3 14535325 14535469 -203501689 - L1ME3A LINE L1 -32 6138 5978 241 299 259 6 chr3 14535480 14535654 -203501504 - MIR SINE MIR -26 236 19 187 274 53 80 chr3 14535610 14535723 -203501435 + MIR SINE MIR 27 136 -72 * 510 284 82 64 chr3 14535786 14535912 -203501246 - MLT1J1 LTR MaLR -112 334 212 2512 68 0 13 chr3 14535912 14536222 -203500936 + AluY SINE Alu 1 306 -5 510 284 82 64 chr3 14536222 14536423 -203500735 - MLT1J1 LTR MaLR -234 212 1 191 286 0 0 chr3 14536427 14536476 -203500682 + L2 LINE L2 3213 3261 -11 258 303 53 75 chr3 14537006 14537257 -203499901 + L1ME4a LINE L1 5687 5931 -190 2352 109 3 0 chr3 14537257 14537569 -203499589 - AluSq SINE Alu 0 313 1 258 303 53 75 chr3 14537569 14537637 -203499521 + L1ME4a LINE L1 5931 5999 -122 24 32 0 0 chr3 14537661 14537692 -203499466 + AT_rich Low_complexity Low_complexity 1 31 0 230 267 50 75 chr3 14538211 14538331 -203498827 + MER5B DNA MER1_type 7 123 -55 2561 65 0 3 chr3 14538350 14538656 -203498502 - AluY SINE Alu -6 305 1 973 102 0 0 chr3 14538707 14538835 -203498323 + AluSp/q SINE Alu 176 303 -10 344 182 23 11 chr3 14538835 14538923 -203498235 - L1MB2 LINE L1 -36 6135 6047 247 280 10 0 chr3 14538948 14539048 -203498110 - L1MC4 LINE L1 -1 8041 7941 1300 102 0 0 chr3 14539345 14539511 -203497647 - AluSg/x SINE Alu -14 296 131 510 320 93 0 chr3 14539666 14539860 -203497298 - MIR SINE MIR 0 262 51 1895 156 19 10 chr3 14540014 14540321 -203496837 + AluJo SINE Alu 1 310 -2 234 347 75 0 chr3 14540353 14540500 -203496658 + MIR3 SINE MIR 40 197 -11 422 250 191 0 chr3 14540647 14540799 -203496359 + MIR SINE MIR 11 191 -71 219 125 0 0 chr3 14540815 14540855 -203496303 + (TG)n Simple_repeat Simple_repeat 2 41 0 700 175 8 0 chr3 14540868 14540988 -203496170 - FLAM_C SINE Alu -12 121 1 1742 168 35 3 chr3 14541010 14541295 -203495863 - AluJo SINE Alu -18 294 1 711 123 9 9 chr3 14541296 14541410 -203495748 - L1MC1 LINE L1 -9 6324 6211 364 309 80 55 chr3 14542334 14542487 -203494671 - MLT1L LTR MaLR -10 605 457 1162 33 26 0 chr3 14542487 14542639 -203494519 - L1PA5 LINE L1 0 6154 5999 364 309 80 55 chr3 14542639 14542915 -203494243 - MLT1L LTR MaLR -158 457 176 878 294 104 30 chr3 14543340 14543745 -203493413 + MLT1K LTR MaLR 144 578 -10 497 201 148 58 chr3 14543973 14544162 -203492996 - MIR SINE MIR -26 236 31 407 235 41 0 chr3 14544176 14544274 -203492884 + MER91C DNA MER1_type 39 140 0 252 369 76 0 chr3 14544544 14544701 -203492457 - MIR SINE MIR -14 248 80 2727 48 0 0 chr3 14545463 14545774 -203491384 + AluY SINE Alu 1 311 0 301 285 180 48 chr3 14545792 14546098 -203491060 - L2 LINE L2 -159 3113 2763 716 181 30 91 chr3 14546098 14546212 -203490946 + MER5A DNA MER1_type 1 99 -90 2336 95 7 0 chr3 14546212 14546507 -203490651 + AluSx SINE Alu 1 297 -15 716 181 30 91 chr3 14546507 14546591 -203490567 + MER5A DNA MER1_type 99 187 -2 301 285 180 48 chr3 14546591 14546632 -203490526 - L2 LINE L2 -509 2763 2729 1810 159 36 13 chr3 14546883 14547184 -203489974 - AluSx SINE Alu -4 308 1 705 83 0 10 chr3 14547184 14547280 -203489878 - AluSq/x SINE Alu -177 135 41 304 192 26 13 chr3 14547353 14547431 -203489727 + L1ME4a LINE L1 5946 6024 -97 238 228 38 25 chr3 14547880 14547959 -203489199 + MLT1K LTR MaLR 497 576 -12 2436 87 7 3 chr3 14548149 14548459 -203488699 + AluSx SINE Alu 1 311 -1 310 313 90 0 chr3 14548736 14548870 -203488288 - MIR SINE MIR -31 231 86 2126 139 13 3 chr3 14548942 14549292 -203487866 + AluJo SINE Alu 1 353 0 264 290 93 0 chr3 14550009 14550116 -203487042 + MIR SINE MIR 27 143 -119 227 250 0 0 chr3 14550996 14551060 -203486098 + (TG)n Simple_repeat Simple_repeat 2 65 0 180 77 0 0 chr3 14552236 14552262 -203484896 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 224 220 44 11 chr3 14552325 14552416 -203484742 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 547 279 118 60 chr3 14552906 14553486 -203483672 - L2 LINE L2 -45 3227 2612 300 289 240 0 chr3 14553664 14553768 -203483390 - MER5A DNA MER1_type 0 189 61 252 247 68 14 chr3 14553781 14553854 -203483304 - MER5A DNA MER1_type -82 107 31 1286 217 173 8 chr3 14553886 14554250 -203482908 - MLT1K LTR MaLR -43 545 122 321 299 31 0 chr3 14554579 14554676 -203482482 + MIR SINE MIR 89 188 -74 2262 85 27 10 chr3 14555024 14555317 -203481841 - AluSx SINE Alu -14 298 1 264 261 15 0 chr3 14555336 14555401 -203481757 - MIR SINE MIR -85 123 58 1736 83 4 18 chr3 14555426 14555655 -203481503 + AluSp SINE Alu 88 313 0 2178 108 3 54 chr3 14555659 14555975 -203481183 + AluSp SINE Alu 2 301 -12 663 229 14 0 chr3 14555994 14556138 -203481020 - MIR SINE MIR -12 250 105 311 267 50 40 chr3 14556158 14556259 -203480899 - L2 LINE L2 -49 3223 3122 2211 120 0 3 chr3 14556274 14556566 -203480592 - AluSq SINE Alu -22 291 1 928 180 0 44 chr3 14556848 14557031 -203480127 - FAM SINE Alu 0 175 1 219 262 16 0 chr3 14557419 14557480 -203479678 + MIR SINE MIR 82 143 -65 245 232 29 94 chr3 14557576 14557605 -203479553 - L1ME4a LINE L1 -1 6120 6091 1942 115 38 54 chr3 14557605 14557919 -203479239 + AluSq SINE Alu 1 309 -4 245 232 29 94 chr3 14557919 14558027 -203479131 - L1ME4a LINE L1 -30 6091 5992 522 290 65 9 chr3 14558049 14558263 -203478895 + MIR SINE MIR 19 244 -18 192 164 0 49 chr3 14558867 14558928 -203478230 + CT-rich Low_complexity Low_complexity 1 58 0 1084 226 91 47 chr3 14558950 14559380 -203477778 - L2 LINE L2 -20 3293 2845 2443 88 0 10 chr3 14560002 14560309 -203476849 - AluSg1 SINE Alu -5 304 1 709 340 76 18 chr3 14561160 14561340 -203475818 - L2 LINE L2 -433 2881 2713 2288 118 0 0 chr3 14561340 14561636 -203475522 + AluSx SINE Alu 1 296 -16 709 340 76 18 chr3 14561636 14562010 -203475148 - L2 LINE L2 -601 2713 2295 790 143 110 0 chr3 14562017 14562171 -203474987 + MIR SINE MIR 90 260 -2 225 292 22 0 chr3 14562172 14562261 -203474897 + (TA)n Simple_repeat Simple_repeat 2 92 0 1683 146 52 7 chr3 14563951 14564239 -203472919 - AluJo SINE Alu -11 301 1 195 283 33 75 chr3 14564246 14564366 -203472792 - MIR SINE MIR -44 218 104 907 200 0 0 chr3 14564939 14565099 -203472059 - AluSg/x SINE Alu 0 312 153 603 146 15 3 chr3 14565777 14565916 -203471242 + AluSg/x SINE Alu 115 296 -14 1415 74 14 42 chr3 14565916 14566038 -203471120 - HUERS-P1 LTR ERV1 -2149 4114 3999 2090 121 0 0 chr3 14566038 14566335 -203470823 - AluSx SINE Alu -15 297 1 1415 74 14 42 chr3 14566335 14566429 -203470729 - HUERS-P1 LTR ERV1 -2264 3999 3904 1018 167 19 77 chr3 14566440 14566752 -203470406 - AluY SINE Alu -3 298 5 363 217 47 28 chr3 14566963 14567069 -203470089 + MER103 DNA DNA 50 157 -9 346 68 0 0 chr3 14567199 14567243 -203469915 + Alu SINE Alu 1 44 -258 192 97 0 0 chr3 14567443 14567474 -203469684 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 532 191 84 71 chr3 14568009 14568234 -203468924 - AluY SINE Alu -80 231 4 749 187 7 7 chr3 14568330 14568480 -203468678 + L1MB3 LINE L1 5948 6097 -86 1654 119 4 45 chr3 14568496 14568765 -203468393 - LTR8 LTR ERV1 -433 258 1 496 236 49 0 chr3 14568765 14568888 -203468270 - L1ME LINE L1 -401 5763 5635 389 114 48 59 chr3 14569089 14569121 -203468037 - L1ME LINE L1 -518 5647 5616 2538 136 50 68 chr3 14569121 14569620 -203467538 - LTR2B LTR ERV1 0 490 1 389 114 48 59 chr3 14569620 14569683 -203467475 - L1ME LINE L1 -549 5616 5552 1754 176 6 6 chr3 14569702 14570014 -203467144 - AluJb SINE Alu 0 312 1 776 216 13 0 chr3 14570014 14570167 -203466991 - L1ME LINE L1 -587 5579 5425 * 1181 212 21 82 chr3 14570154 14570434 -203466724 + L1M4 LINE L1 4848 5101 -1045 1858 150 10 16 chr3 14570434 14570748 -203466410 + AluJo SINE Alu 1 312 0 1181 212 21 82 chr3 14570748 14570844 -203466314 + L1M4 LINE L1 5101 5201 -945 2369 49 0 3 chr3 14570844 14571132 -203466026 + AluY SINE Alu 1 287 -24 3647 110 24 17 chr3 14571150 14571762 -203465396 + Tigger1 DNA MER2_type 1579 2263 -155 1312 245 36 13 chr3 14571896 14572161 -203464997 - L1MCa LINE L1 -2570 3856 3598 1901 115 39 39 chr3 14572161 14572335 -203464823 - AluSx SINE Alu 0 312 139 390 42 0 0 chr3 14572335 14572383 -203464775 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1900 113 3 11 chr3 14572383 14572667 -203464491 - AluSx SINE Alu -30 282 1 1901 115 39 39 chr3 14572667 14572803 -203464355 - AluSx SINE Alu -171 141 1 1312 245 36 13 chr3 14572803 14572986 -203464172 - L1MCa LINE L1 -2828 3598 3398 1302 196 28 0 chr3 14572988 14573238 -203463920 - AluJo SINE Alu -12 300 44 876 123 15 8 chr3 14573247 14573377 -203463781 - AluJb SINE Alu -171 141 11 915 202 0 0 chr3 14573384 14573602 -203463556 - L1MCa LINE L1 -3006 3420 3203 554 225 0 39 chr3 14573606 14573735 -203463423 + FLAM_C SINE Alu 7 130 -13 180 0 0 0 chr3 14573770 14573790 -203463368 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1945 121 29 0 chr3 14573792 14574072 -203463086 - AluSg SINE Alu -22 288 1 1948 250 55 2 chr3 14574077 14574645 -203462513 - L1MCa LINE L1 -3234 3192 2595 996 157 35 0 chr3 14574647 14574819 -203462339 - AluJo/FRAM SINE Alu -1 311 134 2167 99 3 10 chr3 14574819 14575131 -203462027 - AluY SINE Alu -1 310 1 1726 146 76 12 chr3 14575131 14575588 -203461570 - L1MCa LINE L1 -3947 2479 2126 1010 57 0 0 chr3 14575600 14575723 -203461435 - AluSc SINE Alu -186 123 1 617 138 288 0 chr3 14575723 14575883 -203461275 - L1MCa LINE L1 -4287 2139 1934 1906 144 0 0 chr3 14576140 14576431 -203460727 + AluSx SINE Alu 1 291 -21 2399 56 0 13 chr3 14576604 14576908 -203460250 + AluY SINE Alu 1 300 -11 1690 141 31 10 chr3 14576947 14577237 -203459921 + AluJo SINE Alu 5 300 -12 446 297 198 4 chr3 14577484 14577716 -203459442 + MLT1L LTR MaLR 216 492 -123 2155 110 0 3 chr3 14578098 14578398 -203458760 + AluSq SINE Alu 1 299 -14 292 243 14 14 chr3 14578485 14578555 -203458603 - Tigger2 DNA MER2_type 0 2718 2649 1664 171 0 23 chr3 14578555 14578859 -203458299 - AluJo SINE Alu -13 299 3 918 41 0 0 chr3 14578861 14578982 -203458176 - Tigger2 DNA MER2_type -162 2556 2436 1993 108 37 27 chr3 14578982 14579278 -203457880 + THE1B LTR MaLR 1 299 -65 2079 108 6 25 chr3 14579278 14579594 -203457564 - AluSg SINE Alu 0 310 1 2162 101 20 0 chr3 14579594 14579891 -203457267 - AluSg SINE Alu -6 304 2 2680 148 87 8 chr3 14579894 14580306 -203456852 + HUERS-P1 LTR ERV1 3914 4379 -1567 2111 80 0 0 chr3 14580306 14580581 -203456577 + AluSq SINE Alu 25 299 -14 2680 148 87 8 chr3 14580581 14580696 -203456462 + HUERS-P1 LTR ERV1 4379 4483 -1463 1031 54 0 8 chr3 14580697 14580827 -203456331 + AluY SINE Alu 98 226 -85 2009 104 13 13 chr3 14580833 14581142 -203456016 + AluSc SINE Alu 1 309 0 1807 121 0 45 chr3 14581169 14581491 -203455667 + AluSx SINE Alu 7 315 0 8056 98 16 33 chr3 14581491 14581769 -203455389 + HUERS-P1 LTR ERV1 5065 5346 -917 2235 78 3 3 chr3 14581769 14582063 -203455095 + AluSp SINE Alu 2 295 -18 8056 98 16 33 chr3 14582063 14582366 -203454792 + HUERS-P1 LTR ERV1 5346 5653 -610 1737 125 31 48 chr3 14582366 14582687 -203454471 - AluSx SINE Alu 0 316 1 8056 98 16 33 chr3 14582687 14582714 -203454444 + HUERS-P1 LTR ERV1 5653 5679 -584 2316 75 0 0 chr3 14582714 14583008 -203454150 + AluY SINE Alu 1 294 -17 8056 98 16 33 chr3 14583008 14583645 -203453513 + HUERS-P1 LTR ERV1 5679 6263 0 4669 104 6 56 chr3 14583645 14584373 -203452785 + LTR8 LTR ERV1 1 691 0 327 262 50 21 chr3 14584378 14584519 -203452639 - L1M4 LINE L1 -899 5247 5103 350 235 53 38 chr3 14584557 14584689 -203452469 - L1M4 LINE L1 -1014 5132 4999 202 239 0 0 chr3 14584702 14584748 -203452410 + T-rich Low_complexity Low_complexity 1 46 0 426 207 24 0 chr3 14584811 14584893 -203452265 - FLAM SINE Alu -20 123 40 480 200 139 133 chr3 14584923 14585036 -203452122 - MER5A DNA MER1_type 0 189 73 1744 141 3 17 chr3 14585036 14585327 -203451831 - AluJo SINE Alu -25 287 1 480 200 139 133 chr3 14585327 14585393 -203451765 - MER5A DNA MER1_type -116 73 9 2128 100 6 16 chr3 14585434 14585745 -203451413 + AluSp SINE Alu 2 309 -4 2094 126 0 0 chr3 14585753 14586055 -203451103 + AluSx SINE Alu 1 302 -10 380 242 0 22 chr3 14586269 14586360 -203450798 + MLT1F LTR MaLR 47 135 -407 593 122 28 37 chr3 14586363 14586470 -203450688 + L1MB8 LINE L1 6035 6140 -38 697 229 44 84 chr3 14586516 14586575 -203450583 + L1ME3 LINE L1 5919 5979 -183 1927 133 0 25 chr3 14586575 14586890 -203450268 + AluSx SINE Alu 1 307 -5 697 229 44 84 chr3 14586890 14587079 -203450079 + L1ME3 LINE L1 5979 6155 -7 1447 179 7 24 chr3 14587081 14587371 -203449787 - AluSp SINE Alu -17 296 12 216 0 0 0 chr3 14588755 14588779 -203448379 + (TA)n Simple_repeat Simple_repeat 2 25 0 1736 130 44 0 chr3 14588782 14589075 -203448083 - AluSq SINE Alu -7 306 1 1812 157 0 0 chr3 14589339 14589638 -203447520 - AluJo SINE Alu -13 299 1 2008 103 3 0 chr3 14589653 14589943 -203447215 - AluSx SINE Alu -21 291 1 22 35 0 0 chr3 14590348 14590377 -203446781 + GC_rich Low_complexity Low_complexity 1 29 0 552 238 67 54 chr3 14590393 14590616 -203446542 + L1M4 LINE L1 3553 3778 -2368 519 138 0 12 chr3 14590627 14590707 -203446451 + AluJ/FLAM SINE Alu 9 87 -225 5038 69 14 43 chr3 14590769 14590900 -203446258 + LTR8 LTR ERV1 1 134 -557 2169 29 39 59 chr3 14590900 14591207 -203445951 - AluY SINE Alu -10 301 1 5038 69 14 43 chr3 14591207 14591787 -203445371 + LTR8 LTR ERV1 134 691 0 976 153 10 61 chr3 14591787 14591983 -203445175 + LTR8 LTR ERV1 3 188 -503 1446 204 72 135 chr3 14591985 14592710 -203444448 + LTR8A LTR ERV1 49 727 0 1400 220 58 47 chr3 14592710 14592770 -203444388 + L1M4 LINE L1 3885 3943 -2203 2213 89 0 13 chr3 14592770 14593074 -203444084 + AluSc SINE Alu 1 300 -9 1400 220 58 47 chr3 14593074 14593463 -203443695 + L1M4 LINE L1 3943 4339 -1807 2250 91 7 3 chr3 14593474 14593782 -203443376 + AluY SINE Alu 1 309 -2 1839 128 37 3 chr3 14593819 14594116 -203443042 + AluSx SINE Alu 3 309 -3 2071 121 3 33 chr3 14594116 14594325 -203442833 + L1PB3 LINE L1 5828 6026 -128 2234 64 11 0 chr3 14594325 14594650 -203442508 + AluSp SINE Alu 1 328 0 2071 121 3 33 chr3 14594650 14594769 -203442389 + L1PB3 LINE L1 6026 6147 -7 371 88 29 88 chr3 14594774 14594819 -203442339 - LTR49-int LTR ERV1 -4184 2147 2106 2015 143 74 36 chr3 14594819 14595051 -203442107 + LTR23 LTR ERV1 1 258 -179 2213 87 3 13 chr3 14595051 14595361 -203441797 - AluSx SINE Alu -5 307 1 2015 143 74 36 chr3 14595361 14595549 -203441609 + LTR23 LTR ERV1 258 437 0 371 88 29 88 chr3 14595549 14595571 -203441587 - LTR49-int LTR ERV1 -4225 2106 2084 3404 136 30 76 chr3 14595573 14596205 -203440953 + LTR26 LTR ERV1 1 603 0 287 377 45 13 chr3 14596229 14596383 -203440775 + HUERS-P1 LTR ERV1 25 183 -6080 2331 77 0 7 chr3 14596395 14596705 -203440453 - AluY SINE Alu -3 308 1 1721 258 47 59 chr3 14596822 14597434 -203439724 + HUERS-P1 LTR ERV1 471 1075 -5188 401 298 57 19 chr3 14597411 14597569 -203439589 + HUERS-P1 LTR ERV1 1448 1611 -6646 * 793 340 47 50 chr3 14597762 14598403 -203438755 + PABL_B-int LTR ERV1 916 1554 -5568 411 100 0 0 chr3 14598470 14598530 -203438628 - Alu SINE Alu -4 307 248 513 348 18 26 chr3 14598602 14598875 -203438283 + PABL_B-int LTR ERV1 2832 3102 -4020 1607 337 38 46 chr3 14598942 14600024 -203437134 + PABL_B-int LTR ERV1 3201 4275 -2847 1708 188 0 0 chr3 14600024 14600317 -203436841 - AluJo SINE Alu -17 295 3 1607 337 38 46 chr3 14600317 14600352 -203436806 + PABL_B-int LTR ERV1 4275 4309 -2813 2216 76 0 3 chr3 14600693 14600984 -203436174 - AluSg SINE Alu -20 290 1 21 0 0 0 chr3 14600989 14601010 -203436148 + AT_rich Low_complexity Low_complexity 1 21 0 463 341 25 47 chr3 14601083 14601447 -203435711 + PABL_B-int LTR ERV1 4674 5029 -2093 2268 81 10 0 chr3 14601451 14601748 -203435410 + AluSg SINE Alu 1 300 -10 1335 198 36 4 chr3 14602089 14602367 -203434791 - AluJb SINE Alu -21 291 5 812 165 0 8 chr3 14602383 14602516 -203434642 - AluJb SINE Alu -178 134 3 257 87 29 58 chr3 14602737 14602806 -203434352 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 1304 202 126 37 chr3 14602866 14603247 -203433911 - MLT1C LTR MaLR -52 415 1 2430 140 5 10 chr3 14603389 14603795 -203433363 - L1MB3 LINE L1 -1 6182 5779 247 222 0 0 chr3 14603971 14604016 -203433142 + MIR SINE MIR 187 231 -31 9457 135 89 43 chr3 14604187 14605570 -203431588 + L1MCa LINE L1 1 1492 -4934 215 30 0 30 chr3 14605570 14605603 -203431555 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9457 135 89 43 chr3 14605603 14606067 -203431091 + L1MCa LINE L1 1492 1933 -4493 1888 96 0 0 chr3 14606069 14606357 -203430801 + AluSx SINE Alu 35 322 0 1772 95 137 0 chr3 14606407 14606670 -203430488 - AluSg SINE Alu 0 300 2 243 0 0 0 chr3 14606672 14606699 -203430459 + (CTTG)n Simple_repeat Simple_repeat 3 29 0 10942 117 98 42 chr3 14606699 14606737 -203430421 - HUERS-P1 LTR ERV1 -2206 4057 4023 2422 74 0 0 chr3 14606737 14607048 -203430110 - AluY SINE Alu 0 311 1 2094 103 0 10 chr3 14607048 14607350 -203429808 - AluSq SINE Alu -14 299 1 10942 117 98 42 chr3 14607350 14607442 -203429716 - HUERS-P1 LTR ERV1 -2240 4023 3938 2364 68 7 0 chr3 14607442 14607750 -203429408 - AluY SINE Alu 0 311 2 10942 117 98 42 chr3 14607750 14608435 -203428723 - HUERS-P1 LTR ERV1 -2325 3938 3293 1390 143 20 143 chr3 14608435 14608650 -203428508 - AluYb8 SINE Alu 0 308 151 2276 66 3 0 chr3 14608650 14608937 -203428221 - AluY SINE Alu -23 288 1 1390 143 20 143 chr3 14608937 14609071 -203428087 - AluYb8 SINE Alu -157 151 2 10942 117 98 42 chr3 14609071 14609273 -203427885 - HUERS-P1 LTR ERV1 -2970 3293 3104 2202 108 0 0 chr3 14609273 14609579 -203427579 + AluSx SINE Alu 3 308 -4 10942 117 98 42 chr3 14609579 14610616 -203426542 - HUERS-P1 LTR ERV1 -3159 3104 874 637 149 19 19 chr3 14610617 14610771 -203426387 + CT-rich Low_complexity Low_complexity 1 154 0 9950 103 65 59 chr3 14610771 14611054 -203426104 - HUERS-P1 LTR ERV1 -4355 1908 1628 1659 111 111 0 chr3 14611054 14611324 -203425834 - AluSx SINE Alu -12 300 1 9950 103 65 59 chr3 14611324 14611474 -203425684 - HUERS-P1 LTR ERV1 -4635 1628 1480 2235 96 0 0 chr3 14611474 14611776 -203425382 - AluSx SINE Alu -10 302 1 9950 103 65 59 chr3 14611776 14612079 -203425079 - HUERS-P1 LTR ERV1 -4783 1480 1180 333 0 0 0 chr3 14612079 14612116 -203425042 + (GA)n Simple_repeat Simple_repeat 2 38 0 9950 103 65 59 chr3 14612116 14613115 -203424043 - HUERS-P1 LTR ERV1 -5083 1180 173 2239 69 0 23 chr3 14613115 14613419 -203423739 + AluY SINE Alu 1 297 -14 9950 103 65 59 chr3 14613419 14613594 -203423564 - HUERS-P1 LTR ERV1 -6090 173 1 4113 101 17 124 chr3 14613594 14613660 -203423498 - LTR8 LTR ERV1 0 691 620 2126 83 4 0 chr3 14613660 14613937 -203423221 + AluSp SINE Alu 3 280 -33 2452 49 0 10 chr3 14613938 14614243 -203422915 + AluY SINE Alu 1 302 -9 4113 101 17 124 chr3 14614243 14614861 -203422297 - LTR8 LTR ERV1 -71 620 95 7050 60 5 1 chr3 14614861 14615931 -203421227 + L1PA6 LINE L1 5079 6151 -3 4113 101 17 124 chr3 14615931 14616017 -203421141 - LTR8 LTR ERV1 -596 95 1 643 246 27 0 chr3 14616023 14616210 -203420948 + L1ME LINE L1 5254 5445 -725 * 906 213 127 8 chr3 14616201 14616469 -203420689 + L1ME1 LINE L1 5863 6162 -4 1550 184 4 0 chr3 14616524 14616830 -203420328 + AluJb SINE Alu 9 315 0 297 241 125 0 chr3 14616885 14616997 -203420161 + L1ME LINE L1 5428 5553 -609 240 93 209 0 chr3 14617036 14617079 -203420079 - LTR54 LTR ERV1 0 510 459 1973 118 0 10 chr3 14617080 14617256 -203419902 - AluSx SINE Alu -3 309 136 2134 106 0 0 chr3 14617256 14617548 -203419610 - AluSq SINE Alu -21 292 1 1973 118 0 10 chr3 14617548 14617676 -203419482 - AluSx SINE Alu -176 136 8 1509 153 43 98 chr3 14617676 14617731 -203419427 - LTR54 LTR ERV1 -134 376 320 2240 77 0 26 chr3 14617731 14618042 -203419116 - AluY SINE Alu -8 303 1 1509 153 43 98 chr3 14618042 14618117 -203419041 - LTR54 LTR ERV1 -190 320 242 1987 126 0 40 chr3 14618117 14618442 -203418716 + AluSx SINE Alu 1 312 0 1509 153 43 98 chr3 14618442 14618689 -203418469 - LTR54 LTR ERV1 -268 242 18 1567 156 39 39 chr3 14618689 14618997 -203418161 - AluJb SINE Alu -4 308 1 1509 153 43 98 chr3 14618997 14619015 -203418143 - LTR54 LTR ERV1 -492 18 1 228 306 56 0 chr3 14619015 14619087 -203418071 + L1ME LINE L1 5614 5689 -481 1795 154 0 7 chr3 14619090 14619395 -203417763 + AluJo SINE Alu 1 303 -9 687 211 54 70 chr3 14619607 14619920 -203417238 + L1MC5 LINE L1 7624 7931 -30 289 239 11 57 chr3 14619948 14620036 -203417122 + MIR SINE MIR 98 181 -81 2113 89 17 0 chr3 14620071 14620363 -203416795 - AluSg SINE Alu -13 297 1 2046 115 3 0 chr3 14620451 14620747 -203416411 - AluSx SINE Alu -15 297 1 333 271 12 12 chr3 14622259 14622344 -203414814 + MER5A DNA MER1_type 49 133 -56 2095 99 3 7 chr3 14622345 14622648 -203414510 - AluSx SINE Alu -10 302 1 1788 173 0 3 chr3 14622649 14622962 -203414196 - AluJo SINE Alu 0 312 1 442 106 91 0 chr3 14623157 14623223 -203413935 - HY1 scRNA scRNA -39 73 2 1909 118 3 20 chr3 14623234 14623392 -203413766 - AluSx SINE Alu -21 291 139 2181 94 0 3 chr3 14623392 14623689 -203413469 - AluSc SINE Alu -13 296 1 1909 118 3 20 chr3 14623689 14623826 -203413332 - AluSx SINE Alu -173 139 1 915 140 263 31 chr3 14624042 14624270 -203412888 + AluSg1 SINE Alu 13 293 -16 1243 117 283 9 chr3 14624283 14624513 -203412645 + AluSx SINE Alu 1 293 -9 1399 174 11 4 chr3 14624513 14624794 -203412364 + AluSx SINE Alu 1 283 -29 2141 65 25 0 chr3 14625369 14625669 -203411489 - AluSp SINE Alu 0 307 1 694 263 28 49 chr3 14626145 14626189 -203410969 - L1M4 LINE L1 -2585 3561 3518 2345 74 0 10 chr3 14626189 14626498 -203410660 - AluY SINE Alu -5 306 1 694 263 28 49 chr3 14626498 14626538 -203410620 - L1M4 LINE L1 -2628 3518 3479 1597 161 39 7 chr3 14626538 14626823 -203410335 + AluJb SINE Alu 1 294 -18 694 263 28 49 chr3 14626823 14627022 -203410136 - L1M4 LINE L1 -2667 3479 3283 236 185 62 0 chr3 14627027 14627092 -203410066 - L1MB5 LINE L1 -6 6168 6100 1789 175 59 71 chr3 14627092 14627531 -203409627 - LTR8A LTR ERV1 0 727 294 291 260 68 0 chr3 14627529 14627602 -203409556 - LTR8 LTR ERV1 -613 78 1 * 814 191 48 33 chr3 14627605 14627815 -203409343 - L1MB5 LINE L1 -74 6100 5888 807 173 0 33 chr3 14627815 14627965 -203409193 - AluJb SINE Alu -82 230 86 860 145 0 0 chr3 14627986 14628110 -203409048 - FLAM_C SINE Alu -8 125 2 23 0 0 0 chr3 14628119 14628142 -203409016 + AT_rich Low_complexity Low_complexity 1 23 0 393 284 36 4 chr3 14628242 14628422 -203408736 - L1MEd LINE L1 -1231 1259 983 22 0 0 0 chr3 14628427 14628449 -203408709 + AT_rich Low_complexity Low_complexity 1 22 0 1911 130 7 20 chr3 14628456 14628592 -203408566 + AluSx SINE Alu 1 137 -175 2228 105 3 0 chr3 14628592 14628896 -203408262 + AluSp SINE Alu 2 306 -7 1911 130 7 20 chr3 14628896 14629059 -203408099 + AluSx SINE Alu 137 296 -16 786 161 0 0 chr3 14629086 14629204 -203407954 - FLAM_C SINE Alu -15 118 1 1949 138 0 3 chr3 14629269 14629560 -203407598 - AluSx SINE Alu -20 292 3 991 193 0 6 chr3 14629577 14629748 -203407410 - FAM SINE Alu -1 174 5 864 144 0 98 chr3 14629803 14629953 -203407205 + Tigger2a DNA MER2_type 1 133 -2575 2205 88 0 0 chr3 14629953 14630247 -203406911 + AluY SINE Alu 1 294 -17 864 144 0 98 chr3 14630247 14630269 -203406889 + Tigger2a DNA MER2_type 133 156 -278 363 122 0 0 chr3 14630269 14630318 -203406840 - THE1A LTR MaLR 0 355 307 2016 117 0 0 chr3 14630321 14630612 -203406546 - AluSg1 SINE Alu -18 291 1 664 158 44 0 chr3 14630632 14630746 -203406412 - FLAM_C SINE Alu -19 124 6 1054 209 72 19 chr3 14630751 14631058 -203406100 - L1M4 LINE L1 -1440 4706 4384 1609 161 3 30 chr3 14631064 14631118 -203406040 - AluJb SINE Alu -21 291 237 2190 158 12 6 chr3 14631118 14631459 -203405699 + MER61A LTR ERV1 1 343 0 1609 161 3 30 chr3 14631459 14631702 -203405456 - AluJb SINE Alu -75 237 2 2089 68 64 20 chr3 14631755 14632051 -203405107 - AluY SINE Alu -2 309 1 2028 113 6 49 chr3 14632066 14632392 -203404766 - AluSx SINE Alu 0 312 1 740 147 0 0 chr3 14632397 14632506 -203404652 - MER50 LTR ERV1 -556 178 70 674 173 0 0 chr3 14632507 14632617 -203404541 + FLAM_C SINE Alu 19 128 -15 2304 80 0 3 chr3 14632622 14632933 -203404225 + AluY SINE Alu 1 310 -1 3961 168 11 18 chr3 14632933 14633596 -203403562 + L1P5 LINE L1 4484 5150 -1004 1999 121 0 14 chr3 14633596 14633893 -203403265 + AluSx SINE Alu 1 293 -19 3961 168 11 18 chr3 14633893 14634353 -203402805 + L1P5 LINE L1 5150 5595 -559 2124 108 3 7 chr3 14634353 14634660 -203402498 - AluSx SINE Alu -6 306 1 3961 168 11 18 chr3 14634660 14634673 -203402485 + L1P5 LINE L1 5595 5607 -547 1824 173 0 0 chr3 14635491 14635803 -203401355 + AluJo SINE Alu 1 312 0 412 334 66 36 chr3 14636227 14636532 -203400626 + HUERS-P1 LTR ERV1 5946 6259 -4 * 3818 164 13 50 chr3 14636519 14636534 -203400624 - LTR49-int LTR ERV1 -4230 2101 2087 3853 128 13 37 chr3 14636534 14637152 -203400006 + LTR26 LTR ERV1 1 603 0 3818 164 13 50 chr3 14637152 14637608 -203399550 - LTR49-int LTR ERV1 -4244 2087 1666 2064 82 0 17 chr3 14637608 14637899 -203399259 - AluSg1 SINE Alu -19 290 5 3818 164 13 50 chr3 14637899 14638184 -203398974 - LTR49-int LTR ERV1 -4665 1666 1372 2114 98 11 0 chr3 14638219 14638505 -203398653 - AluY SINE Alu -13 298 10 549 115 67 5 chr3 14638600 14638704 -203398454 - LTR49-int LTR ERV1 -2946 1934 1290 336 257 0 14 chr3 14638758 14638828 -203398330 - tRNA-Glu-GAG tRNA tRNA 0 75 7 1914 154 77 100 chr3 14638855 14639323 -203397835 - LTR49-int LTR ERV1 -5141 1190 734 2030 133 0 7 chr3 14639325 14639634 -203397524 + AluSx SINE Alu 1 307 -5 606 188 10 0 chr3 14639635 14639731 -203397427 - LTR49-int LTR ERV1 -6234 97 1 672 103 62 0 chr3 14639737 14639855 -203397303 + LTR49 LTR ERV1 486 592 -3 3605 195 53 51 chr3 14639858 14640073 -203397085 + L1ME1 LINE L1 5236 5449 -717 261 57 0 0 chr3 14640073 14640108 -203397050 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9924 41 73 5 chr3 14640108 14641383 -203395775 - SVA Other Other -19 1367 6 3605 195 53 51 chr3 14641383 14642092 -203395066 + L1ME1 LINE L1 5448 6161 -5 641 198 41 8 chr3 14642284 14642405 -203394753 + FLAM_C SINE Alu 2 126 -17 1097 127 12 0 chr3 14642560 14642726 -203394432 + AluSg/x SINE Alu 131 298 -14 1734 217 5 8 chr3 14642728 14643119 -203394039 + L1MB4 LINE L1 4817 5206 -940 2026 103 31 0 chr3 14643143 14643433 -203393725 - AluSx SINE Alu -13 299 1 4635 137 37 18 chr3 14643435 14644254 -203392904 + L1MB4 LINE L1 5337 6170 -10 769 237 0 0 chr3 14644432 14644584 -203392574 - FRAM SINE Alu -14 152 1 2440 42 0 33 chr3 14644659 14644965 -203392193 + AluY SINE Alu 1 296 -15 265 282 53 0 chr3 14645221 14645352 -203391806 + L1MDa LINE L1 2444 2581 -3959 552 223 12 54 chr3 14645880 14646046 -203391112 - L1ME2 LINE L1 -10 6154 5996 * 580 274 17 45 chr3 14646034 14646200 -203390958 + L1MDa LINE L1 2918 3074 -3466 1562 171 0 63 chr3 14646200 14646533 -203390625 - AluJo SINE Alu 0 312 1 580 274 17 45 chr3 14646533 14646654 -203390504 + L1MDa LINE L1 3074 3197 -3343 1041 169 0 11 chr3 14646939 14647122 -203390036 + AluJb SINE Alu 122 302 -10 23 0 0 0 chr3 14647137 14647160 -203389998 + AT_rich Low_complexity Low_complexity 1 23 0 203 266 31 62 chr3 14647217 14647281 -203389877 - MIR SINE MIR -62 146 85 392 256 115 39 chr3 14647322 14647478 -203389680 + L2 LINE L2 3136 3303 -10 329 134 119 15 chr3 14647502 14647569 -203389589 - MLT1B LTR MaLR 0 390 317 1080 125 11 11 chr3 14647576 14647752 -203389406 - AluY SINE Alu 0 311 136 541 80 91 11 chr3 14647752 14647840 -203389318 - MLT1B LTR MaLR -58 332 238 874 141 0 15 chr3 14648103 14648238 -203388920 + FLAM_A SINE Alu 1 133 0 423 83 0 0 chr3 14648386 14648446 -203388712 + (TC)n Simple_repeat Simple_repeat 1 60 0 757 165 0 0 chr3 14648639 14648760 -203388398 + FLAM_C SINE Alu 1 121 -22 2286 64 0 10 chr3 14648770 14649067 -203388091 + AluY SINE Alu 1 294 -17 977 196 10 10 chr3 14649697 14649891 -203387267 + L1PB4 LINE L1 5949 6142 -14 2027 128 0 13 chr3 14649892 14650197 -203386961 - AluSx SINE Alu -11 301 1 5341 38 8 159 chr3 14650455 14651478 -203385680 - SVA Other Other -518 868 1 466 270 209 23 chr3 14651489 14651704 -203385454 - MIR SINE MIR -2 260 6 2013 116 13 16 chr3 14651747 14652058 -203385100 + AluSx SINE Alu 1 310 -2 945 221 61 35 chr3 14652079 14652226 -203384932 + MIR SINE MIR 5 162 -100 2031 160 39 16 chr3 14652226 14652607 -203384551 - MLT1B LTR MaLR 0 390 1 945 221 61 35 chr3 14652607 14652690 -203384468 + MIR SINE MIR 162 241 -21 437 318 79 9 chr3 14653026 14653240 -203383918 - MIR SINE MIR -1 261 33 1300 35 12 6 chr3 14653270 14653440 -203383718 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 2025 121 19 0 chr3 14653472 14653779 -203383379 - AluSq SINE Alu 0 313 1 617 216 54 11 chr3 14653872 14654057 -203383101 - MLT1K LTR MaLR -17 571 379 351 150 0 0 chr3 14654058 14654118 -203383040 + (TC)n Simple_repeat Simple_repeat 1 60 0 2153 116 3 0 chr3 14654118 14654428 -203382730 - AluSx SINE Alu -1 311 1 740 262 87 36 chr3 14654428 14654703 -203382455 - MLT1K LTR MaLR -162 426 138 225 0 0 0 chr3 14654714 14654739 -203382419 + (TG)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr3 14654741 14654772 -203382386 + (GA)n Simple_repeat Simple_repeat 2 32 0 450 204 34 109 chr3 14655158 14655305 -203381853 + L2 LINE L2 3137 3272 0 227 294 42 42 chr3 14655354 14655473 -203381685 + MIR3 SINE MIR 90 208 0 883 187 0 0 chr3 14655873 14656028 -203381130 - FRAM SINE Alu -11 155 1 270 234 56 56 chr3 14656147 14656254 -203380904 - MIR SINE MIR -63 145 39 292 301 0 0 chr3 14656375 14656468 -203380690 - L2 LINE L2 -10 3303 3211 1948 99 7 23 chr3 14656937 14657239 -203379919 + AluSg SINE Alu 1 297 -13 346 301 8 15 chr3 14657308 14657441 -203379717 - AluSg/x SINE Alu 0 302 171 27 62 0 0 chr3 14657470 14657518 -203379640 + AT_rich Low_complexity Low_complexity 1 48 0 1776 125 0 8 chr3 14659496 14659760 -203377398 - AluSx SINE Alu -50 262 1 195 189 0 0 chr3 14659768 14659805 -203377353 + L2 LINE L2 1750 1786 -1528 27 0 0 0 chr3 14660514 14660541 -203376617 + GC_rich Low_complexity Low_complexity 1 27 0 41 21 0 0 chr3 14660787 14660835 -203376323 + GC_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr3 14661250 14661279 -203375879 + GC_rich Low_complexity Low_complexity 1 29 0 817 76 0 0 chr3 14661613 14661718 -203375440 - AluJb SINE Alu -207 105 1 22 35 0 0 chr3 14661741 14661770 -203375388 + AT_rich Low_complexity Low_complexity 1 29 0 2197 88 3 16 chr3 14661868 14662176 -203374982 + AluSg SINE Alu 1 304 -6 289 181 66 0 chr3 14865373 14865455 -203171703 - MIR SINE MIR -77 131 36 345 195 18 0 chr3 14865789 14865872 -203171286 - MIR SINE MIR -62 146 100 245 338 55 7 chr3 14866958 14867103 -203170055 + L1ME4a LINE L1 5961 6112 -9 445 248 6 64 chr3 14867890 14868047 -203169111 - MIR3 SINE MIR -45 163 16 440 218 12 11 chr3 14868296 14868431 -203168727 - MIR SINE MIR -59 149 37 252 266 0 0 chr3 14868490 14868569 -203168589 - MIR SINE MIR -62 146 68 2088 103 7 0 chr3 14868956 14869261 -203167897 + AluSx SINE Alu 1 307 0 841 271 74 13 chr3 14870477 14870776 -203166382 + MER113 DNA MER1_type? 8 324 -197 183 189 0 0 chr3 14870937 14870974 -203166184 + MIR3 SINE MIR 150 186 -22 345 280 61 30 chr3 14871809 14871941 -203165217 - MIR SINE MIR -117 145 10 478 31 0 0 chr3 14871975 14872040 -203165118 + AluSp/q SINE Alu 243 307 -6 390 258 89 8 chr3 14873760 14873884 -203163274 - MIR SINE MIR -81 181 48 297 253 24 48 chr3 14880195 14880321 -203156837 - MIR3 SINE MIR -91 117 11 201 227 30 45 chr3 14880319 14880385 -203156773 - MIR3 SINE MIR -37 171 107 * 267 146 0 0 chr3 14882412 14882467 -203154691 + (TA)n Simple_repeat Simple_repeat 2 56 0 186 43 0 0 chr3 14884285 14884308 -203152850 + (CA)n Simple_repeat Simple_repeat 1 23 0 269 342 68 27 chr3 14885059 14885322 -203151836 - L1M4 LINE L1 -1232 4914 4641 198 135 19 39 chr3 14886617 14886669 -203150489 - MIR SINE MIR -77 131 81 443 333 68 5 chr3 14887178 14887370 -203149788 - MIR SINE MIR -54 208 5 289 261 81 36 chr3 14887518 14887629 -203149529 - MIR3 SINE MIR -47 161 46 2185 114 0 0 chr3 14887659 14887967 -203149191 + AluSx SINE Alu 1 308 -4 527 0 16 0 chr3 14888811 14888874 -203148284 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2064 82 24 10 chr3 14888874 14889165 -203147993 - AluSx SINE Alu -17 295 1 417 213 82 41 chr3 14889859 14889981 -203147177 - MIR SINE MIR -86 176 50 671 137 30 18 chr3 14890539 14890707 -203146451 + CT-rich Low_complexity Low_complexity 5 174 0 302 215 13 0 chr3 14890723 14890802 -203146356 + CT-rich Low_complexity Low_complexity 1 80 0 308 241 19 37 chr3 14891018 14891126 -203146032 + MIR SINE MIR 32 137 -71 358 276 48 35 chr3 14891537 14891682 -203145476 - L2 LINE L2 0 3313 3167 434 325 175 38 chr3 14892031 14892373 -203144785 + L2 LINE L2 2884 3272 0 207 261 43 65 chr3 14893384 14893476 -203143682 + MIR SINE MIR 103 192 -70 451 276 31 31 chr3 14893483 14893536 -203143622 - MIR SINE MIR 0 262 210 2255 78 3 0 chr3 14893536 14893829 -203143329 - AluSp SINE Alu -4 309 16 451 276 31 31 chr3 14893829 14893938 -203143220 - MIR SINE MIR -51 211 100 214 316 25 0 chr3 14893938 14894017 -203143141 - MIR SINE MIR -70 138 58 180 0 0 0 chr3 14895072 14895092 -203142066 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 319 289 194 55 chr3 14895427 14895628 -203141530 + MIR SINE MIR 17 245 -17 1727 184 97 35 chr3 14895949 14896284 -203140874 + Charlie4a DNA MER1_type 21 393 -1568 920 178 6 6 chr3 14896284 14896441 -203140717 + FRAM SINE Alu 1 157 -9 1727 184 97 35 chr3 14896441 14896561 -203140597 + Charlie4a DNA MER1_type 393 504 -4 209 280 199 15 chr3 14897086 14897223 -203139935 - MIR SINE MIR -89 173 3 240 306 71 0 chr3 14897583 14897681 -203139477 + MIR SINE MIR 41 145 -63 3207 183 41 17 chr3 14898929 14899567 -203137591 - MER6 DNA MER2_type -183 682 30 2688 154 50 21 chr3 14899575 14900043 -203137115 - L1MB7 LINE L1 -259 5925 5439 2182 115 0 10 chr3 14900043 14900355 -203136803 - AluSx SINE Alu -3 309 1 2688 154 50 21 chr3 14900355 14900411 -203136747 - L1MB7 LINE L1 -745 5439 5386 668 348 51 52 chr3 14900976 14901327 -203135831 + HAL1b LINE L1 302 652 -932 2212 96 7 0 chr3 14901327 14901628 -203135530 + AluSx SINE Alu 1 303 -9 849 145 15 0 chr3 14901632 14901763 -203135395 + FLAM_C SINE Alu 1 133 0 668 348 51 52 chr3 14901763 14901973 -203135185 + HAL1b LINE L1 655 730 -854 1207 221 95 57 chr3 14901974 14902495 -203134663 + L1ME1 LINE L1 5635 6333 -1 280 304 72 0 chr3 14902492 14902630 -203134528 + HAL1b LINE L1 753 900 -684 * 2063 106 0 20 chr3 14902691 14902803 -203134355 + AluSx SINE Alu 1 114 -198 2141 127 59 31 chr3 14902803 14903157 -203134001 + THE1B LTR MaLR 1 364 0 2063 106 0 20 chr3 14903157 14903345 -203133813 + AluSx SINE Alu 114 295 -17 848 146 17 73 chr3 14903346 14903524 -203133634 + FRAM SINE Alu 8 175 -1 973 240 106 37 chr3 14903525 14903604 -203133554 + L1MC5 LINE L1 6996 7068 -893 2217 130 51 23 chr3 14903604 14903958 -203133200 - THE1B LTR MaLR 0 364 1 973 240 106 37 chr3 14903958 14904282 -203132876 + L1MC5 LINE L1 7068 7427 -534 257 202 18 83 chr3 14904440 14904549 -203132609 + L1ME3A LINE L1 5960 6061 -109 336 269 90 18 chr3 14906644 14906811 -203130347 - MIR SINE MIR -35 227 49 526 233 60 0 chr3 14907010 14907143 -203130015 + L1MB2 LINE L1 6028 6168 -3 1813 170 45 28 chr3 14907448 14907847 -203129311 - L1MB2 LINE L1 -99 6072 5667 225 292 0 13 chr3 14907895 14907968 -203129190 - MIR SINE MIR -112 96 47 1864 82 56 43 chr3 14908294 14908599 -203128559 - AluSx SINE Alu -3 309 1 669 176 146 24 chr3 14908729 14908894 -203128264 - MER5A DNA MER1_type 0 189 5 187 301 189 7 chr3 14910155 14910298 -203126860 - MIR SINE MIR -4 258 90 1693 146 21 7 chr3 14911543 14911823 -203125335 + AluSx SINE Alu 11 294 -18 630 151 126 17 chr3 14911830 14911949 -203125209 + FLAM_C SINE Alu 1 132 -1 7863 22 5 0 chr3 14911951 14913168 -203123990 + L1PA3 LINE L1 4963 6178 0 704 262 166 39 chr3 14913186 14913407 -203123751 + L1MEc LINE L1 93 284 -6112 2416 95 0 0 chr3 14913407 14913716 -203123442 + AluSx SINE Alu 1 307 -5 704 262 166 39 chr3 14913716 14913910 -203123248 + L1MEc LINE L1 284 561 -5835 2273 96 31 0 chr3 14913951 14914243 -203122915 + AluSg SINE Alu 1 301 -9 496 213 92 67 chr3 14914251 14914490 -203122668 + L1MEc LINE L1 1512 1756 -4640 909 150 0 21 chr3 14914493 14914633 -203122525 + AluJo SINE Alu 1 137 -175 2397 116 0 0 chr3 14914653 14914963 -203122195 + AluSx SINE Alu 1 310 -2 704 192 0 0 chr3 14915032 14915157 -203122001 + AluJb SINE Alu 179 303 -9 968 290 84 7 chr3 14915157 14915574 -203121584 + L1MEc LINE L1 1759 2207 -4189 399 241 98 0 chr3 14915552 14915685 -203121473 + L1MD3 LINE L1 7833 7978 -86 * 300 277 62 54 chr3 14915788 14915918 -203121240 + MER5A DNA MER1_type 37 167 -22 522 153 59 0 chr3 14916411 14916496 -203120662 + MER33 DNA MER1_type 27 116 -208 1824 144 7 4 chr3 14916497 14916768 -203120390 + AluJb SINE Alu 18 289 -23 684 157 170 7 chr3 14916772 14916925 -203120233 + Tigger1 DNA MER2_type 2241 2418 0 472 289 67 26 chr3 14918261 14918455 -203118703 + MIR3 SINE MIR 5 206 -2 189 250 197 76 chr3 14919424 14919556 -203117602 - MIR3 SINE MIR -26 182 35 261 203 40 54 chr3 14920515 14920589 -203116569 + MIR SINE MIR 59 131 -77 368 248 96 41 chr3 14921565 14921731 -203115427 - MIR SINE MIR -61 147 14 240 200 150 0 chr3 14922332 14922412 -203114746 - MIR3 SINE MIR -7 201 110 243 0 0 0 chr3 14922616 14922643 -203114515 + (A)n Simple_repeat Simple_repeat 1 27 0 321 247 26 0 chr3 14922732 14922809 -203114349 + MIR SINE MIR 105 183 -79 185 277 210 34 chr3 14924011 14924130 -203113028 + MIR3 SINE MIR 7 146 -62 * 196 200 0 0 chr3 14924098 14924133 -203113025 + MIR SINE MIR 114 148 -114 231 279 153 9 chr3 14924448 14924559 -203112599 - MIR SINE MIR -62 146 20 27 62 0 0 chr3 14924848 14924896 -203112262 + AT_rich Low_complexity Low_complexity 1 48 0 212 197 0 33 chr3 14925050 14925111 -203112047 + GA-rich Low_complexity Low_complexity 2 60 0 284 239 261 0 chr3 14925967 14926059 -203111099 + MER5A DNA MER1_type 39 154 -35 187 208 0 62 chr3 14926504 14926552 -203110606 - L2 LINE L2 -6 3307 3263 316 297 157 22 chr3 14926585 14926768 -203110390 + MIR SINE MIR 45 245 -17 360 266 168 53 chr3 14926804 14927013 -203110145 - MIR SINE MIR -30 232 1 1672 160 0 25 chr3 14927510 14927792 -203109366 + AluSx SINE Alu 38 312 0 339 220 189 38 chr3 14927853 14928144 -203109014 + Tigger8 DNA MER2_type 187 521 -145 189 121 0 0 chr3 14928411 14928444 -203108714 + (A)n Simple_repeat Simple_repeat 1 33 0 2117 125 0 0 chr3 14928564 14928845 -203108313 - AluSx SINE Alu -31 281 1 2557 74 0 0 chr3 14928917 14929226 -203107932 + AluY SINE Alu 1 309 -2 2348 104 0 0 chr3 14933658 14933956 -203103202 + AluSg SINE Alu 1 298 -12 354 279 215 23 chr3 14934304 14934523 -203102635 - MIR SINE MIR 0 262 2 223 226 161 0 chr3 14934677 14934739 -203102419 + L2 LINE L2 3242 3313 0 2001 124 11 3 chr3 14934765 14935077 -203102081 - AluSx SINE Alu 0 314 1 2091 108 42 0 chr3 14935266 14935554 -203101604 + AluSx SINE Alu 3 302 -10 262 240 83 0 chr3 14936015 14936111 -203101047 + L1ME LINE L1 5761 5864 -257 22 35 0 0 chr3 14936548 14936577 -203100581 + AT_rich Low_complexity Low_complexity 1 29 0 839 124 7 51 chr3 14936927 14937064 -203100094 - FLAM_C SINE Alu -2 131 1 1933 129 28 14 chr3 14937497 14937784 -203099374 - AluJb SINE Alu -21 291 1 1058 85 0 0 chr3 14937787 14937916 -203099242 - AluSq/x SINE Alu -171 142 14 1330 173 9 101 chr3 14937933 14938251 -203098907 + AluSx SINE Alu 1 289 -23 1102 156 24 0 chr3 14938262 14938429 -203098729 + AluJb SINE Alu 132 302 -10 1997 125 0 59 chr3 14938506 14938827 -203098331 + AluSx SINE Alu 1 302 -10 2091 113 34 7 chr3 14938932 14939225 -203097933 + AluSx SINE Alu 1 301 -11 1884 159 28 0 chr3 14940826 14941109 -203096049 - AluJo SINE Alu -21 291 1 1166 235 66 54 chr3 14941122 14941620 -203095538 + MLT1H1 LTR MaLR 10 513 -42 559 213 16 16 chr3 14941670 14941792 -203095366 + L2 LINE L2 3188 3309 -4 456 259 40 46 chr3 14941802 14941976 -203095182 - MER5A DNA MER1_type -1 188 16 318 206 11 43 chr3 14942417 14942509 -203094649 + L1MC5 LINE L1 7837 7925 -36 236 234 144 54 chr3 14942936 14943103 -203094055 + L1MC5 LINE L1 7451 7632 -329 1975 138 37 3 chr3 14943311 14943609 -203093549 + AluSx SINE Alu 1 308 -4 200 241 86 0 chr3 14943653 14943711 -203093447 - MIR SINE MIR -11 251 189 279 203 51 0 chr3 14943747 14943806 -203093352 + HAL1 LINE L1 8 69 -2438 512 241 80 0 chr3 14943811 14943923 -203093235 + MER58A DNA MER1_type 41 161 0 463 246 87 43 chr3 14943985 14944123 -203093035 - MIR SINE MIR -118 144 1 662 263 94 69 chr3 14944333 14944767 -203092391 + HAL1 LINE L1 34 478 -2029 306 170 0 0 chr3 14944785 14944832 -203092326 + AluJ/FRAM SINE Alu 221 267 -35 2243 79 3 76 chr3 14944835 14945163 -203091995 - AluY SINE Alu -7 304 1 21 0 0 0 chr3 14945163 14945184 -203091974 + AT_rich Low_complexity Low_complexity 1 21 0 2312 127 0 0 chr3 14945189 14945496 -203091662 + AluSx SINE Alu 1 307 -5 404 298 156 25 chr3 14945509 14945591 -203091567 + HAL1 LINE L1 1046 1116 -1391 2175 123 10 0 chr3 14945591 14945892 -203091266 + AluSx SINE Alu 1 304 -8 404 298 156 25 chr3 14945892 14946047 -203091111 + HAL1 LINE L1 1116 1314 -1193 489 255 105 79 chr3 14946053 14946434 -203090724 + HAL1 LINE L1 8 398 -2109 3408 243 125 45 chr3 14946437 14947368 -203089790 + HAL1 LINE L1 444 1299 -1208 2346 114 0 0 chr3 14947368 14947676 -203089482 + AluSg SINE Alu 1 308 -2 3408 243 125 45 chr3 14947676 14947732 -203089426 + HAL1 LINE L1 1299 1349 -1158 2229 114 3 7 chr3 14947732 14948030 -203089128 + AluSx SINE Alu 1 297 -15 3408 243 125 45 chr3 14948030 14948863 -203088295 + HAL1 LINE L1 1349 2411 -96 2362 104 3 0 chr3 14948890 14949197 -203087961 + AluSg SINE Alu 1 308 -2 524 292 65 34 chr3 14949281 14949663 -203087495 + MLT1J LTR MaLR 73 504 -7 283 228 22 22 chr3 14950753 14950845 -203086313 - MIR3 SINE MIR -27 181 90 776 168 8 0 chr3 14951263 14951388 -203085770 + AluJo/FLAM SINE Alu 3 128 -184 1898 164 0 7 chr3 14951389 14951687 -203085471 + AluJb SINE Alu 5 300 -12 2085 126 10 3 chr3 14951787 14952096 -203085062 + AluSq SINE Alu 1 311 -2 1233 123 0 0 chr3 14952096 14952278 -203084880 + AluSg/x SINE Alu 120 301 0 2420 51 54 0 chr3 14952411 14952706 -203084452 + AluY SINE Alu 1 311 0 249 146 0 0 chr3 14952917 14952951 -203084207 + (T)n Simple_repeat Simple_repeat 1 37 -18 1909 100 12 0 chr3 14952951 14953201 -203083957 - AluSx SINE Alu -59 253 1 249 146 0 0 chr3 14953201 14953221 -203083937 + (T)n Simple_repeat Simple_repeat 36 55 0 225 0 0 0 chr3 14953236 14953261 -203083897 + (TA)n Simple_repeat Simple_repeat 2 26 0 1819 125 68 29 chr3 14953262 14953542 -203083616 - AluSx SINE Alu -21 291 1 347 291 64 7 chr3 14953833 14953974 -203083184 - Charlie8 DNA MER1_type -2141 276 128 461 248 26 128 chr3 14953983 14954079 -203083079 - L2 LINE L2 -1 3312 3208 1760 169 0 39 chr3 14954079 14954387 -203082771 + AluJb SINE Alu 1 296 -16 461 248 26 128 chr3 14954387 14954556 -203082602 - L2 LINE L2 -105 3208 3074 2019 140 7 3 chr3 14954603 14954895 -203082263 - AluSx SINE Alu -19 293 1 263 219 0 2 chr3 14955132 14955181 -203081977 - MIR SINE MIR -118 90 43 1727 134 15 22 chr3 14955240 14955509 -203081649 + AluJb SINE Alu 1 267 -45 219 36 0 0 chr3 14955519 14955547 -203081611 + (AGGGGG)n Simple_repeat Simple_repeat 4 31 0 261 286 114 28 chr3 14955816 14956071 -203081087 + L2 LINE L2 2581 2857 -457 247 243 214 64 chr3 14956127 14956267 -203080891 + L2 LINE L2 2893 3053 -219 379 327 0 10 chr3 14956632 14956736 -203080422 + MIR SINE MIR 20 122 -140 1885 124 10 42 chr3 14957253 14957397 -203079761 + AluJo SINE Alu 1 148 -164 2496 70 0 3 chr3 14957397 14957698 -203079460 + AluY SINE Alu 1 300 -11 1885 124 10 42 chr3 14957698 14957860 -203079298 + AluJo SINE Alu 148 297 -15 1355 155 88 60 chr3 14958259 14958385 -203078773 + AluJo SINE Alu 6 127 -185 2496 80 0 0 chr3 14958385 14958687 -203078471 - AluY SINE Alu -9 302 1 1355 155 88 60 chr3 14958687 14958844 -203078314 + AluJo SINE Alu 127 297 -15 2025 153 0 0 chr3 14958868 14959162 -203077996 + AluSx SINE Alu 1 294 -18 405 250 56 0 chr3 14960133 14960241 -203076917 + L2 LINE L2 3191 3304 -9 204 40 0 0 chr3 14960360 14960385 -203076773 + (A)n Simple_repeat Simple_repeat 1 25 0 718 225 23 6 chr3 14960569 14960742 -203076416 + MER5B DNA MER1_type 1 176 -2 22 0 0 0 chr3 14961781 14961803 -203075355 + GC_rich Low_complexity Low_complexity 1 22 0 264 204 19 0 chr3 14962424 14962484 -203074674 - MIR SINE MIR -58 150 93 1855 105 80 4 chr3 14962579 14962855 -203074303 + AluJb SINE Alu 1 297 -15 305 219 211 18 chr3 14962857 14962971 -203074187 + L1MC4a LINE L1 5198 5333 -813 1938 139 3 7 chr3 14962971 14963274 -203073884 + AluJb SINE Alu 1 302 -10 2392 59 24 0 chr3 14963366 14963653 -203073505 + AluY SINE Alu 1 294 -17 385 263 61 36 chr3 14963663 14963740 -203073418 + L1MC4a LINE L1 5414 5488 -633 2417 69 0 36 chr3 14963740 14964046 -203073112 + AluY SINE Alu 1 295 -16 385 263 61 36 chr3 14964046 14964315 -203072843 + L1MC4a LINE L1 5488 5572 -549 329 93 56 0 chr3 14964418 14964472 -203072686 - L1MB7 LINE L1 -9 6175 6119 2160 125 0 13 chr3 14964479 14964783 -203072375 + AluSg SINE Alu 4 303 -7 2807 130 110 9 chr3 14964837 14964959 -203072199 - L1MB7 LINE L1 -207 5971 5863 4698 49 26 0 chr3 14964959 14965535 -203071623 - LTR10C LTR ERV1 0 591 1 2807 130 110 9 chr3 14965535 14965941 -203071217 - L1MB7 LINE L1 -315 5863 5390 382 232 0 65 chr3 14966586 14966724 -203070434 - MIR SINE MIR -84 178 50 24 0 0 0 chr3 14966814 14966838 -203070320 + AT_rich Low_complexity Low_complexity 1 24 0 2211 119 0 0 chr3 14967217 14967511 -203069647 + AluSg SINE Alu 1 294 -16 489 159 262 0 chr3 14967744 14967851 -203069307 + AluJo SINE Alu 2 136 -176 1362 31 0 0 chr3 15018161 15018324 -203018834 + L1PA2 LINE L1 5993 6155 0 2177 52 41 17 chr3 15018336 15018626 -203018532 + AluY SINE Alu 1 297 -14 2011 135 3 3 chr3 15019021 15019333 -203017825 + AluSx SINE Alu 1 312 0 1286 137 19 5 chr3 15023692 15023897 -203013261 + AluJb SINE Alu 94 301 -11 2228 74 0 17 chr3 15024227 15024526 -203012632 - AluSp SINE Alu -19 294 1 2039 104 0 38 chr3 15024702 15025020 -203012138 + AluSp SINE Alu 1 306 -7 384 313 27 34 chr3 15025062 15025209 -203011949 + MIR SINE MIR 98 243 -19 2296 65 3 19 chr3 15025492 15025802 -203011356 - AluSp SINE Alu -8 305 1 2130 122 0 3 chr3 15025930 15026233 -203010925 - AluSx SINE Alu -10 302 1 2299 89 0 0 chr3 15026760 15027063 -203010095 - AluSx SINE Alu -9 303 1 1481 216 24 0 chr3 15027064 15027360 -203009798 - L1ME LINE L1 -488 5676 5374 261 174 0 0 chr3 15027384 15027430 -203009728 + MLT2D LTR ERVL 4 49 -365 1831 163 0 0 chr3 15027430 15027725 -203009433 - AluJb SINE Alu -17 295 1 817 289 174 60 chr3 15027782 15028667 -203008491 - L2 LINE L2 -40 3232 2233 1791 175 0 0 chr3 15029889 15030181 -203006977 - AluJo SINE Alu -20 292 1 1273 160 5 0 chr3 15030223 15030423 -203006735 + AluJb SINE Alu 87 287 -25 2222 110 0 0 chr3 15030458 15030766 -203006392 + AluSc SINE Alu 2 309 0 1982 83 3 73 chr3 15031045 15031358 -203005800 + AluSg SINE Alu 1 291 -19 1858 154 0 10 chr3 15031407 15031705 -203005453 - AluSx SINE Alu -11 301 7 854 116 148 19 chr3 15031713 15031868 -203005290 - AluSg/x SINE Alu -16 293 119 2179 79 7 3 chr3 15032073 15032378 -203004780 + AluY SINE Alu 3 308 -3 2012 104 31 0 chr3 15032738 15033025 -203004133 - AluSx SINE Alu -16 296 1 639 227 35 0 chr3 15033689 15033830 -203003328 - MER5A DNA MER1_type -39 150 5 441 0 0 0 chr3 15033835 15033884 -203003274 + (TA)n Simple_repeat Simple_repeat 2 50 0 2156 102 3 3 chr3 15033885 15034188 -203002970 - AluSx SINE Alu -9 303 1 208 248 86 76 chr3 15034358 15034463 -203002695 + MIR SINE MIR 120 225 -37 815 108 8 8 chr3 15034505 15034634 -203002524 + AluSq/x SINE Alu 1 129 -184 491 88 0 15 chr3 15034634 15034724 -203002434 + Alu SINE Alu 225 313 0 1589 160 0 47 chr3 15036067 15036231 -203000927 - AluJb SINE Alu -15 297 152 2190 98 3 0 chr3 15036231 15036536 -203000622 - AluSp SINE Alu -7 306 1 1589 160 0 47 chr3 15036536 15036671 -203000487 - AluJb SINE Alu -160 152 12 2319 54 0 63 chr3 15036783 15037114 -203000044 - AluY SINE Alu -1 310 1 2152 121 0 3 chr3 15037214 15037521 -202999637 + AluSg SINE Alu 1 306 -4 2087 115 3 3 chr3 15037974 15038279 -202998879 + AluSc SINE Alu 1 305 -4 2140 92 14 0 chr3 15038577 15038869 -202998289 - AluSx SINE Alu -16 296 1 1907 130 7 7 chr3 15038983 15039275 -202997883 + AluSx SINE Alu 1 292 -20 1362 159 83 25 chr3 15039466 15039743 -202997415 - AluJo SINE Alu -19 293 1 2187 106 0 0 chr3 15039884 15040177 -202996981 - AluSg SINE Alu -15 295 3 717 218 0 0 chr3 15040178 15040311 -202996847 - FLAM_C SINE Alu -5 138 6 668 270 81 16 chr3 15041317 15041502 -202995656 + MIR SINE MIR 1 197 -65 9164 42 2 1 chr3 15041701 15042771 -202994387 + MER11C LTR ERVK 1 1071 0 756 71 0 0 chr3 15043680 15043778 -202993380 + AluY SINE Alu 205 302 -9 204 240 20 0 chr3 15044703 15044753 -202992405 + MIR SINE MIR 113 163 -99 23 33 0 0 chr3 15045455 15045485 -202991673 + AT_rich Low_complexity Low_complexity 1 30 0 1888 160 3 0 chr3 15046665 15046972 -202990186 + AluJb SINE Alu 1 308 -4 756 101 0 0 chr3 15047743 15047842 -202989316 - AluSg SINE Alu -209 101 3 562 184 0 0 chr3 15048162 15048265 -202988893 - AluJb SINE Alu -7 305 203 1831 174 0 0 chr3 15048277 15048581 -202988577 + AluJb SINE Alu 2 305 -7 2271 87 3 16 chr3 15048901 15049212 -202987946 + AluSg SINE Alu 3 309 -1 426 283 96 26 chr3 15049593 15049776 -202987382 + MIR SINE MIR 20 212 -50 1903 121 8 0 chr3 15049889 15050154 -202987004 + AluSq SINE Alu 1 267 -46 228 35 0 0 chr3 15050162 15050191 -202986967 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2167 94 0 7 chr3 15050357 15050656 -202986502 - AluSq SINE Alu -16 297 1 2223 98 0 3 chr3 15051710 15052006 -202985152 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr3 15052353 15052375 -202984783 + AT_rich Low_complexity Low_complexity 1 22 0 1545 165 49 0 chr3 15052879 15053164 -202983994 + AluSx SINE Alu 1 299 -13 2265 97 0 0 chr3 15053967 15054276 -202982882 + AluSc SINE Alu 1 309 0 204 375 68 17 chr3 15054656 15054832 -202982326 + L2 LINE L2 2572 2756 -558 210 234 0 0 chr3 15054935 15054982 -202982176 - L2 LINE L2 0 3313 3267 1707 149 10 36 chr3 15055057 15055366 -202981792 + AluJb SINE Alu 1 301 -11 2059 111 0 0 chr3 15055366 15055645 -202981513 + AluSg SINE Alu 1 280 -30 2413 63 0 0 chr3 15055749 15056050 -202981108 - AluY SINE Alu -10 301 1 1481 216 24 0 chr3 15056051 15056347 -202980811 - L1ME LINE L1 -488 5676 5374 261 174 0 0 chr3 15056371 15056417 -202980741 + MLT2D LTR ERVL 4 49 -365 1831 163 0 0 chr3 15056417 15056712 -202980446 - AluJb SINE Alu -17 295 1 817 289 174 60 chr3 15056769 15057654 -202979504 - L2 LINE L2 -40 3232 2233 1791 175 0 0 chr3 15058876 15059168 -202977990 - AluJo SINE Alu -20 292 1 1273 160 5 0 chr3 15059210 15059410 -202977748 + AluJb SINE Alu 87 287 -25 2222 110 0 0 chr3 15059445 15059753 -202977405 + AluSc SINE Alu 2 309 0 1982 83 3 73 chr3 15060032 15060345 -202976813 + AluSg SINE Alu 1 291 -19 1858 154 0 10 chr3 15060394 15060692 -202976466 - AluSx SINE Alu -11 301 7 1705 109 87 11 chr3 15060700 15060975 -202976183 - AluSx SINE Alu -16 296 1 2324 53 0 0 chr3 15061003 15061308 -202975850 + AluY SINE Alu 1 305 0 1307 184 4 16 chr3 15061657 15061907 -202975251 - AluJo SINE Alu -63 249 3 819 131 0 51 chr3 15061917 15062054 -202975104 - FLAM_C SINE Alu -2 131 2 1908 128 10 3 chr3 15062092 15062381 -202974777 - AluSx SINE Alu -20 292 2 1193 178 4 21 chr3 15062398 15062634 -202974524 - AluJo SINE Alu -4 308 77 1526 125 4 93 chr3 15062634 15062941 -202974217 + AluSx SINE Alu 29 310 0 943 155 0 42 chr3 15062941 15063109 -202974049 + AluJo/FRAM SINE Alu 135 295 -17 2342 76 0 3 chr3 15063626 15063929 -202973229 + AluYa5 SINE Alu 1 302 -9 2334 89 3 10 chr3 15064174 15064487 -202972671 + AluY SINE Alu 1 311 0 180 0 0 0 chr3 15064721 15064741 -202972417 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2427 101 0 0 chr3 15065414 15065720 -202971438 + AluSg SINE Alu 1 306 -4 576 252 8 8 chr3 15065724 15065851 -202971307 + MIR SINE MIR 28 154 -108 2219 114 0 3 chr3 15067078 15067377 -202969781 + AluSx SINE Alu 1 298 -14 5426 82 25 22 chr3 15067387 15067598 -202969560 - L1MA3 LINE L1 -28 6277 6068 2127 134 0 0 chr3 15067598 15067896 -202969262 + AluSx SINE Alu 1 298 -14 5426 82 25 22 chr3 15067896 15068499 -202968659 - L1MA3 LINE L1 -237 6068 5461 6232 32 17 8 chr3 15068512 15069220 -202967938 - SVA Other Other 0 1386 673 1031 121 0 0 chr3 15069648 15069788 -202967370 - AluSq/x SINE Alu -173 140 1 433 181 81 128 chr3 15070156 15070305 -202966853 - MER103 DNA DNA -1 165 24 274 219 78 0 chr3 15070402 15070466 -202966692 + L2 LINE L2 3153 3221 -51 223 316 10 41 chr3 15070530 15070628 -202966530 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 679 261 101 20 chr3 15070697 15070896 -202966262 - MER58C DNA MER1_type 0 215 1 1900 102 98 0 chr3 15071655 15071919 -202965239 + AluSx SINE Alu 1 290 -22 1567 147 105 11 chr3 15072016 15072282 -202964876 + AluJb SINE Alu 1 291 -21 2463 53 0 0 chr3 15072290 15072595 -202964563 + AluY SINE Alu 1 305 0 1432 184 4 16 chr3 15072944 15073194 -202963964 - AluJo SINE Alu -63 249 3 838 131 0 51 chr3 15073204 15073341 -202963817 - FLAM_C SINE Alu -2 131 2 2052 128 10 3 chr3 15073379 15073668 -202963490 - AluSx SINE Alu -20 292 2 1278 182 4 21 chr3 15073685 15073921 -202963237 - AluJo SINE Alu -4 308 77 1640 125 4 93 chr3 15073921 15074228 -202962930 + AluSx SINE Alu 29 310 0 1022 155 0 42 chr3 15074228 15074396 -202962762 + AluJo/FRAM SINE Alu 135 295 -17 2488 76 0 3 chr3 15074913 15075216 -202961942 + AluYa5 SINE Alu 1 302 -9 2334 89 3 10 chr3 15075461 15075774 -202961384 + AluY SINE Alu 1 311 0 180 0 0 0 chr3 15076008 15076028 -202961130 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2427 101 0 0 chr3 15076701 15077007 -202960151 + AluSg SINE Alu 1 306 -4 576 252 8 8 chr3 15077011 15077138 -202960020 + MIR SINE MIR 28 154 -108 2219 114 0 3 chr3 15078365 15078664 -202958494 + AluSx SINE Alu 1 298 -14 5426 82 25 22 chr3 15078674 15078885 -202958273 - L1MA3 LINE L1 -28 6277 6068 2127 134 0 0 chr3 15078885 15079183 -202957975 + AluSx SINE Alu 1 298 -14 5426 82 25 22 chr3 15079183 15079786 -202957372 - L1MA3 LINE L1 -237 6068 5461 7085 49 4 58 chr3 15079799 15080754 -202956404 - SVA Other Other 0 1386 483 2349 115 0 0 chr3 15081703 15082007 -202955151 - AluSx SINE Alu -8 304 1 2179 131 0 3 chr3 15082412 15082718 -202954440 + AluSx SINE Alu 2 306 -6 180 344 49 0 chr3 15083299 15083360 -202953798 + L2 LINE L2 2991 3054 -259 1676 153 0 62 chr3 15083412 15083719 -202953439 - AluJo SINE Alu -19 293 6 181 291 38 63 chr3 15083765 15083844 -202953314 + L3b LINE CR1 1427 1503 -80 2155 79 6 103 chr3 15083925 15084265 -202952893 + AluSx SINE Alu 1 307 -5 797 186 117 0 chr3 15084266 15084411 -202952747 + AluSp SINE Alu 135 296 -17 212 281 0 53 chr3 15084628 15084685 -202952473 - MIR3 SINE MIR -41 167 114 984 159 43 19 chr3 15084828 15085036 -202952122 - L1MB7 LINE L1 -47 6137 5925 2216 134 0 0 chr3 15085653 15085951 -202951207 + AluSx SINE Alu 1 298 -14 1453 65 0 0 chr3 15085951 15086119 -202951039 + AluSg/x SINE Alu 134 301 -11 555 141 24 0 chr3 15086301 15086386 -202950772 - AluSg/x SINE Alu -22 290 204 2169 46 0 77 chr3 15086542 15086851 -202950307 + AluY SINE Alu 19 305 0 1432 184 4 16 chr3 15087201 15087451 -202949707 - AluJo SINE Alu -63 249 3 826 139 0 51 chr3 15087461 15087598 -202949560 - FLAM_C SINE Alu -2 131 2 2242 107 7 3 chr3 15087636 15087927 -202949231 - AluSx SINE Alu -20 292 1 374 103 0 0 chr3 15088164 15088222 -202948936 + Tigger2 DNA MER2_type 2430 2487 -231 491 102 136 34 chr3 15088222 15088343 -202948815 - AluY SINE Alu 0 313 184 240 89 0 0 chr3 15088343 15088388 -202948770 + Alu SINE Alu 257 301 0 2109 130 3 16 chr3 15088399 15088714 -202948444 + AluSx SINE Alu 1 311 -1 686 198 9 0 chr3 15088736 15088852 -202948306 - FLAM_A SINE Alu -16 117 1 2205 120 0 10 chr3 15088917 15089216 -202947942 - AluSq SINE Alu -17 296 1 499 204 65 88 chr3 15089454 15089748 -202947410 - AluSx SINE Alu -17 295 9 1887 90 22 109 chr3 15089975 15090296 -202946862 + AluSx SINE Alu 1 293 -19 238 330 0 0 chr3 15091364 15091467 -202945691 - Alu SINE Alu -195 105 3 532 96 0 0 chr3 15091554 15091627 -202945531 + AluS SINE Alu 6 78 -235 643 194 0 39 chr3 15092700 15092829 -202944329 + FLAM_A SINE Alu 18 141 -1 2265 94 3 16 chr3 15093373 15093681 -202943477 - AluSg SINE Alu 0 310 7 2224 99 0 7 chr3 15093712 15094005 -202943153 - AluY SINE Alu -20 291 1 219 320 70 39 chr3 15094081 15094209 -202942949 + MIR SINE MIR 91 222 -40 24 0 0 0 chr3 15094384 15094408 -202942750 + AT_rich Low_complexity Low_complexity 1 24 0 443 232 0 65 chr3 15094498 15094636 -202942522 + MIR SINE MIR 50 178 -84 2405 153 108 6 chr3 15095281 15095686 -202941472 + L1MB7 LINE L1 5390 5863 -315 4669 49 26 0 chr3 15095686 15096262 -202940896 + LTR10C LTR ERV1 1 591 0 2405 153 108 6 chr3 15096262 15096384 -202940774 + L1MB7 LINE L1 5863 5971 -207 2149 132 0 13 chr3 15096438 15096742 -202940416 - AluSg SINE Alu -7 303 4 316 93 56 0 chr3 15096749 15096803 -202940355 + L1MB7 LINE L1 6119 6175 -9 349 261 91 53 chr3 15096910 15097179 -202939979 - L1MC4a LINE L1 -549 5572 5487 2426 68 0 36 chr3 15097179 15097486 -202939672 - AluY SINE Alu -15 296 1 349 261 91 53 chr3 15097486 15097563 -202939595 - L1MC4a LINE L1 -634 5487 5414 2408 59 24 0 chr3 15097573 15097860 -202939298 - AluY SINE Alu -17 294 1 866 160 0 13 chr3 15097952 15098102 -202939056 - AluJb SINE Alu -11 301 154 263 200 274 21 chr3 15098800 15098895 -202938263 - L1MA7 LINE L1 0 6291 6173 * 673 252 27 46 chr3 15098893 15099155 -202938003 + L1MA7 LINE L1 5893 6149 -142 223 282 0 47 chr3 15100947 15101032 -202936126 - MIR SINE MIR -117 145 65 199 227 0 0 chr3 15101187 15101231 -202935927 + L2 LINE L2 3268 3311 -2 2172 34 100 4 chr3 15102507 15102776 -202934382 + AluY SINE Alu 1 295 -16 302 248 101 9 chr3 15102815 15102924 -202934234 + L2 LINE L2 3024 3142 -171 186 245 20 20 chr3 15102992 15103041 -202934117 + L2 LINE L2 3264 3312 -1 2572 80 0 0 chr3 15105561 15105872 -202931286 + AluY SINE Alu 1 311 0 1185 106 0 0 chr3 15106204 15106296 -202930862 + (TGGG)n Simple_repeat Simple_repeat 1 272 0 1185 106 0 0 chr3 15106296 15106476 -202930682 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 291 196 65 33 chr3 15106725 15106817 -202930341 - MIR SINE MIR -108 154 60 2322 120 0 0 chr3 15106839 15107148 -202930010 - AluSx SINE Alu -3 309 1 433 181 81 128 chr3 15107516 15107665 -202929493 - MER103 DNA DNA -1 165 24 274 219 78 0 chr3 15107762 15107826 -202929332 + L2 LINE L2 3153 3221 -51 223 316 10 41 chr3 15107890 15107988 -202929170 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 679 261 101 20 chr3 15108057 15108256 -202928902 - MER58C DNA MER1_type 0 215 1 1900 102 98 0 chr3 15109015 15109279 -202927879 + AluSx SINE Alu 1 290 -22 1567 147 105 11 chr3 15109376 15109642 -202927516 + AluJo SINE Alu 1 291 -21 2594 66 0 0 chr3 15109650 15109955 -202927203 + AluY SINE Alu 1 305 -6 1169 45 0 0 chr3 15109961 15110093 -202927065 - AluY SINE Alu -179 132 1 2287 94 10 0 chr3 15110464 15110761 -202926397 + AluSq SINE Alu 1 300 -13 2426 90 0 0 chr3 15111586 15111896 -202925262 + AluY SINE Alu 1 310 -1 1841 171 26 0 chr3 15111983 15112287 -202924871 - AluJo SINE Alu 0 312 1 710 328 26 9 chr3 15112294 15112526 -202924632 + MIR SINE MIR 26 261 -1 2473 103 0 0 chr3 15112752 15113064 -202924094 - AluSx SINE Alu 0 312 1 433 380 54 0 chr3 15113159 15113364 -202923794 + MIR SINE MIR 33 248 -14 337 329 34 0 chr3 15113685 15113834 -202923324 - L1M4 LINE L1 -1938 4208 4055 553 115 0 0 chr3 15113916 15113994 -202923164 - U6 snRNA snRNA -29 78 1 387 264 28 9 chr3 15114522 15114628 -202922530 - MIR SINE MIR -135 127 20 276 303 94 59 chr3 15115056 15115310 -202921848 + L2 LINE L2 2969 3231 -41 312 70 0 0 chr3 15115411 15115454 -202921704 + (TG)n Simple_repeat Simple_repeat 2 44 0 782 186 0 0 chr3 15115521 15115645 -202921513 + FLAM_C SINE Alu 2 125 -18 25 83 0 0 chr3 15115731 15115791 -202921367 + AT_rich Low_complexity Low_complexity 1 60 0 2230 117 0 23 chr3 15115791 15116099 -202921059 - AluSx SINE Alu -11 301 1 1994 147 10 0 chr3 15116099 15116391 -202920767 - AluJb SINE Alu -17 295 1 764 164 16 23 chr3 15116409 15116537 -202920621 - FLAM_C SINE Alu -14 129 3 23 0 0 0 chr3 15116640 15116663 -202920495 + AT_rich Low_complexity Low_complexity 1 23 0 1505 162 36 56 chr3 15116673 15116975 -202920183 + AluJo SINE Alu 1 296 -16 2302 122 0 0 chr3 15116975 15117287 -202919871 + AluSx SINE Alu 1 312 0 1224 213 8 12 chr3 15117386 15117630 -202919528 + MIR SINE MIR 20 262 0 568 266 24 16 chr3 15118118 15118136 -202919022 + MIR SINE MIR 17 33 -215 2647 30 0 13 chr3 15118136 15118440 -202918718 + AluY SINE Alu 1 300 -11 568 266 24 16 chr3 15118440 15118592 -202918566 + MIR SINE MIR 33 187 -61 219 243 122 27 chr3 15118633 15118707 -202918451 - MIR SINE MIR -64 144 64 1510 109 41 0 chr3 15118789 15119010 -202918148 + MER30 DNA MER1_type 1 230 0 2398 80 0 10 chr3 15119111 15119412 -202917746 - AluY SINE Alu -13 298 1 2254 108 7 3 chr3 15119415 15119711 -202917447 - AluSp SINE Alu -16 297 1 690 175 50 8 chr3 15119711 15119831 -202917327 - AluJo/FLAM SINE Alu -186 126 2 405 251 131 0 chr3 15119844 15120035 -202917123 + L1ME LINE L1 5603 5818 -303 1742 91 5 0 chr3 15120177 15120396 -202916762 - AluSg SINE Alu -90 220 1 1329 95 6 0 chr3 15120396 15120565 -202916593 - AluSp SINE Alu -10 303 134 2298 96 10 3 chr3 15120565 15120866 -202916292 - AluY SINE Alu -8 303 1 1853 149 10 36 chr3 15120866 15121174 -202915984 - AluJb SINE Alu -12 300 1 212 234 0 0 chr3 15121249 15121296 -202915862 + L2 LINE L2 3267 3313 0 210 375 68 17 chr3 15121399 15121575 -202915583 - L2 LINE L2 -558 2756 2572 1398 157 0 15 chr3 15122309 15122570 -202914588 - AluY SINE Alu -54 257 1 2054 150 0 3 chr3 15122934 15123234 -202913924 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr3 15123270 15123295 -202913863 + AT_rich Low_complexity Low_complexity 1 25 0 1075 70 8 0 chr3 15123296 15123425 -202913733 + AluSq/x SINE Alu 1 130 -183 2498 39 0 0 chr3 15123425 15123730 -202913428 + AluY SINE Alu 1 305 0 1432 184 4 16 chr3 15124079 15124329 -202912829 - AluJo SINE Alu -63 249 3 838 131 0 51 chr3 15124339 15124476 -202912682 - FLAM_C SINE Alu -2 131 2 2114 126 0 7 chr3 15124514 15124808 -202912350 - AluSx SINE Alu -20 292 1 2431 85 3 3 chr3 15124818 15125125 -202912033 - AluSp SINE Alu -6 307 1 366 264 66 9 chr3 15125128 15125234 -202911924 - MER5A DNA MER1_type 0 189 78 371 304 138 7 chr3 15125695 15125833 -202911325 + MIR SINE MIR 28 183 -79 2448 73 0 10 chr3 15126163 15126463 -202910695 + AluY SINE Alu 1 297 -14 1445 110 55 0 chr3 15126564 15126782 -202910376 - MER30 DNA MER1_type 0 230 1 219 243 122 27 chr3 15126864 15126938 -202910220 + MIR SINE MIR 64 144 -64 244 288 116 30 chr3 15127150 15127383 -202909775 + L2 LINE L2 2605 2857 -457 217 289 175 57 chr3 15127439 15127633 -202909525 + L2 LINE L2 2893 3109 -163 369 330 0 10 chr3 15127946 15128049 -202909109 + MIR SINE MIR 21 122 -140 1885 124 10 42 chr3 15128566 15128710 -202908448 + AluJo SINE Alu 1 148 -164 2496 70 0 3 chr3 15128710 15129011 -202908147 + AluY SINE Alu 1 300 -11 1885 124 10 42 chr3 15129011 15129173 -202907985 + AluJo SINE Alu 148 297 -15 739 155 23 16 chr3 15129572 15129701 -202907457 + AluJo SINE Alu 6 135 -177 885 189 38 32 chr3 15130192 15130377 -202906781 - MER5A DNA MER1_type 0 189 4 2473 39 19 26 chr3 15130434 15130741 -202906417 + AluY SINE Alu 1 305 -6 1094 287 76 12 chr3 15131116 15131548 -202905610 + MLT1J LTR MaLR 2 461 -50 234 0 0 0 chr3 15131718 15131744 -202905414 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1779 148 3 11 chr3 15131839 15132123 -202905035 - AluSx SINE Alu -30 282 1 24 85 0 0 chr3 15132200 15132259 -202904899 + AT_rich Low_complexity Low_complexity 1 59 0 1990 117 10 45 chr3 15132625 15132933 -202904225 - AluSx SINE Alu -15 297 1 2200 103 14 0 chr3 15133215 15133507 -202903651 + AluSx SINE Alu 6 301 -11 262 190 0 127 chr3 15133676 15133731 -202903427 + Tigger2 DNA MER2_type 1 31 -403 2013 150 3 3 chr3 15133731 15134024 -202903134 - AluSx SINE Alu -19 293 1 262 190 0 127 chr3 15134024 15134047 -202903111 + Tigger2 DNA MER2_type 31 55 -379 * 1163 118 98 10 chr3 15134031 15134234 -202902924 + Tigger2 DNA MER2_type 2267 2487 -231 491 102 136 34 chr3 15134234 15134355 -202902803 - AluY SINE Alu 0 313 184 240 89 0 0 chr3 15134355 15134400 -202902758 + Alu SINE Alu 256 300 0 2152 132 0 3 chr3 15134411 15134706 -202902452 + AluSx SINE Alu 1 294 -18 1399 73 0 0 chr3 15135268 15135433 -202901725 - AluSg/x SINE Alu -14 296 132 2216 134 0 0 chr3 15135433 15135731 -202901427 - AluSx SINE Alu -14 298 1 984 159 43 19 chr3 15136348 15136556 -202900602 + L1MB7 LINE L1 5925 6137 -47 212 281 0 53 chr3 15136699 15136756 -202900402 + MIR3 SINE MIR 114 167 -41 797 186 117 0 chr3 15136973 15137118 -202900040 - AluSp SINE Alu -17 296 135 2155 79 6 103 chr3 15137119 15137459 -202899699 - AluSx SINE Alu -5 307 1 181 291 38 63 chr3 15137540 15137619 -202899539 - L3b LINE CR1 -80 1503 1427 1685 153 0 62 chr3 15137665 15137972 -202899186 + AluJo SINE Alu 6 293 -19 180 344 49 0 chr3 15138024 15138085 -202899073 - L2 LINE L2 -259 3054 2991 2340 96 3 0 chr3 15138666 15138968 -202898190 - AluSg1 SINE Alu -6 303 1 2428 93 3 0 chr3 15138968 15139270 -202897888 - AluSx SINE Alu -9 303 1 468 183 0 0 chr3 15139689 15139771 -202897387 + AluSp/q SINE Alu 226 307 -6 180 0 0 0 chr3 15139930 15139950 -202897208 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2234 102 3 10 chr3 15140184 15140497 -202896661 - AluY SINE Alu 0 311 1 2488 76 0 3 chr3 15140744 15141047 -202896111 - AluYa5 SINE Alu -9 302 1 1022 155 0 42 chr3 15141564 15141732 -202895426 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 15141732 15141759 -202895399 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1913 101 0 88 chr3 15141760 15142066 -202895092 - AluSc SINE Alu -30 279 1 1685 165 49 0 chr3 15142869 15143154 -202894004 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 15143658 15143680 -202893478 + AT_rich Low_complexity Low_complexity 1 22 0 2370 98 0 3 chr3 15144027 15144323 -202892835 - AluSg SINE Alu -15 295 1 2240 93 0 27 chr3 15145377 15145678 -202891480 + AluSx SINE Alu 1 293 -19 247 154 0 0 chr3 15145679 15145718 -202891440 - Alu SINE Alu -177 125 87 424 233 158 14 chr3 15145721 15145867 -202891291 + L2 LINE L2 3131 3297 -16 * 474 267 12 121 chr3 15145862 15146095 -202891063 + L2 LINE L2 3025 3215 -98 2439 85 3 0 chr3 15146095 15146400 -202890758 - AluSg SINE Alu -4 306 1 474 267 12 121 chr3 15146400 15146488 -202890670 + L2 LINE L2 3215 3311 -2 203 0 37 0 chr3 15147255 15147282 -202889876 + (TG)n Simple_repeat Simple_repeat 2 29 0 1661 81 5 5 chr3 15147333 15147543 -202889615 - AluSq SINE Alu -28 285 76 2602 49 7 3 chr3 15147544 15147851 -202889307 - AluY SINE Alu -3 308 1 614 114 0 0 chr3 15147855 15147934 -202889224 - AluSq SINE Alu -232 80 2 497 172 90 46 chr3 15148267 15148419 -202888739 + MIR SINE MIR 43 211 -51 2211 113 10 0 chr3 15148463 15148764 -202888394 - AluSx SINE Alu -6 306 3 1928 176 107 11 chr3 15148931 15149237 -202887921 - L1MB8 LINE L1 -9 6169 5805 2435 83 0 3 chr3 15149237 15149537 -202887621 - AluY SINE Alu -12 299 1 1928 176 107 11 chr3 15149537 15149678 -202887480 - L1MB8 LINE L1 -373 5805 5679 1411 195 33 0 chr3 15149678 15149919 -202887239 - AluJb SINE Alu -63 249 1 476 148 168 0 chr3 15149920 15150021 -202887137 - L1MB8 LINE L1 -571 5607 5490 2425 105 0 0 chr3 15150021 15150327 -202886831 - AluSx SINE Alu 0 312 7 1591 101 18 0 chr3 15150340 15150558 -202886600 - AluSg/x SINE Alu -18 294 73 210 37 0 0 chr3 15150558 15150585 -202886573 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 700 248 21 7 chr3 15150585 15150730 -202886428 - FRAM SINE Alu -19 147 1 423 283 96 26 chr3 15150844 15151027 -202886131 - MIR SINE MIR -50 212 20 2436 87 3 16 chr3 15151407 15151719 -202885439 - AluSg SINE Alu 0 310 3 1780 125 4 7 chr3 15152590 15152869 -202884289 - AluY SINE Alu -33 278 1 23 0 0 0 chr3 15152927 15152950 -202884208 + AT_rich Low_complexity Low_complexity 1 23 0 1930 168 26 8 chr3 15153233 15153614 -202883544 - L1MB4 LINE L1 -1 6179 5792 2349 103 0 3 chr3 15153617 15153919 -202883239 + AluSc SINE Alu 1 301 -8 199 263 0 35 chr3 15154381 15154438 -202882720 + MIR SINE MIR 108 162 -100 1844 146 28 0 chr3 15154467 15154755 -202882403 - AluJo SINE Alu -16 296 1 1887 147 0 60 chr3 15156389 15156708 -202880450 - AluJb SINE Alu -12 300 1 1892 98 0 0 chr3 15157118 15157354 -202879804 - AluSx SINE Alu -37 275 40 400 48 32 0 chr3 15157943 15158006 -202879152 + (CA)n Simple_repeat Simple_repeat 1 65 0 189 0 0 0 chr3 15158130 15158151 -202879007 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 589 250 36 30 chr3 15158297 15158583 -202878575 - L2 LINE L2 -250 3063 2783 2502 51 0 3 chr3 15158722 15159017 -202878141 - AluY SINE Alu -17 294 1 356 241 12 18 chr3 15159179 15159290 -202877868 + MLT1I LTR MaLR 318 409 0 1235 140 0 0 chr3 15159583 15159761 -202877397 + AluSg/x SINE Alu 135 312 0 523 224 35 9 chr3 15159890 15160006 -202877152 + MIR SINE MIR 38 156 -106 204 365 56 24 chr3 15159970 15160096 -202877062 - MIR SINE MIR -56 152 23 * 596 310 101 39 chr3 15160609 15161062 -202876096 + L2 LINE L2 2737 3296 -17 2020 120 7 48 chr3 15161069 15161204 -202875954 + AluSx SINE Alu 1 140 -172 2366 74 3 0 chr3 15161204 15161519 -202875639 + AluSp SINE Alu 1 316 0 2020 120 7 48 chr3 15161519 15161691 -202875467 + AluSx SINE Alu 140 296 -16 512 223 76 38 chr3 15162294 15162451 -202874707 + MER103 DNA DNA 1 163 -3 823 148 65 13 chr3 15162894 15163049 -202874109 + MER46A DNA MER2_type 13 175 -61 1018 175 0 63 chr3 15163049 15163255 -202873903 + AluJo SINE Alu 120 312 0 952 122 0 98 chr3 15163937 15164125 -202873033 - AluSg/x SINE Alu 0 303 132 2236 112 3 6 chr3 15164125 15164437 -202872721 - AluSx SINE Alu -1 311 1 2492 75 3 3 chr3 15164447 15164754 -202872404 - AluSp SINE Alu -6 307 1 965 168 38 32 chr3 15164757 15164942 -202872216 - MER5A DNA MER1_type 0 189 4 2493 39 19 26 chr3 15164999 15165306 -202871852 + AluY SINE Alu 1 305 -6 1191 287 76 12 chr3 15165681 15166113 -202871045 + MLT1J LTR MaLR 2 461 -50 2061 70 3 14 chr3 15166283 15166594 -202870564 - AluY SINE Alu 0 308 1 1905 150 0 3 chr3 15166958 15167258 -202869900 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr3 15167294 15167319 -202869839 + AT_rich Low_complexity Low_complexity 1 25 0 1012 70 8 0 chr3 15167320 15167449 -202869709 + AluSq/x SINE Alu 1 130 -183 2414 56 3 0 chr3 15167449 15167755 -202869403 + AluY SINE Alu 1 307 -4 2279 99 0 3 chr3 15167761 15168074 -202869084 + AluSx SINE Alu 1 312 0 2091 145 69 57 chr3 15168075 15168422 -202868736 - MER65A LTR ERV1 -33 412 58 1877 104 46 7 chr3 15168422 15168702 -202868456 - AluSx SINE Alu -21 291 1 2091 145 69 57 chr3 15168702 15168761 -202868397 - MER65A LTR ERV1 -387 58 1 331 273 244 13 chr3 15169475 15169783 -202867375 + L2 LINE L2 2926 3304 -9 1864 127 0 11 chr3 15170152 15170435 -202866723 + AluSx SINE Alu 11 290 -22 1141 129 16 5 chr3 15170852 15171038 -202866120 - AluSg/x SINE Alu -18 292 105 1808 164 0 0 chr3 15171087 15171385 -202865773 + AluSx SINE Alu 1 298 -14 225 222 0 0 chr3 15171387 15171441 -202865717 - MER20B DNA MER1_type -726 57 4 1657 173 10 7 chr3 15171625 15171920 -202865238 - AluJb SINE Alu -7 305 10 1982 109 3 7 chr3 15171981 15172275 -202864883 + AluSg SINE Alu 1 293 -17 2027 109 3 16 chr3 15172287 15172590 -202864568 + AluSx SINE Alu 3 301 -11 827 143 8 0 chr3 15172801 15172927 -202864231 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 15173002 15173030 -202864128 + AT_rich Low_complexity Low_complexity 1 28 0 1693 121 0 112 chr3 15173251 15173591 -202863567 - AluJo SINE Alu -10 302 1 298 237 130 46 chr3 15173594 15173725 -202863433 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 15173768 15173792 -202863366 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 610 261 112 11 chr3 15174119 15174307 -202862851 - MIR SINE MIR -18 244 38 183 280 192 48 chr3 15175137 15175262 -202861896 + MIR SINE MIR 119 261 -1 373 217 26 11 chr3 15175272 15175428 -202861730 + MIR SINE MIR 3 225 -37 335 332 175 15 chr3 15175494 15175762 -202861396 - L2 LINE L2 -38 3234 2924 2045 47 4 12 chr3 15176168 15176426 -202860732 + L1PA4 LINE L1 5899 6154 -1 2108 101 10 3 chr3 15176525 15176831 -202860327 - AluY SINE Alu -3 308 1 449 62 10 82 chr3 15177007 15177045 -202860113 - L1MB3 LINE L1 0 6183 6144 1673 123 0 12 chr3 15177045 15177298 -202859860 - AluSx SINE Alu -14 298 49 449 62 10 82 chr3 15177298 15177356 -202859802 - L1MB3 LINE L1 -39 6144 6094 746 35 9 60 chr3 15177382 15177498 -202859660 + L1PA6 LINE L1 6045 6154 0 917 154 12 117 chr3 15177515 15177755 -202859403 + AluJo SINE Alu 86 300 -12 1376 154 17 80 chr3 15177766 15178065 -202859093 - AluJo SINE Alu -30 282 3 327 377 84 0 chr3 15178331 15178498 -202858660 + L2 LINE L2 2568 2748 -566 2032 102 0 3 chr3 15178522 15178806 -202858352 + AluY SINE Alu 18 300 -11 2200 113 0 3 chr3 15179714 15180023 -202857135 - AluSc SINE Alu 0 309 2 1178 176 10 0 chr3 15180058 15180257 -202856901 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 15180299 15180591 -202856567 + AluJo SINE Alu 1 292 -20 582 138 21 0 chr3 15181450 15181544 -202855614 - AluY SINE Alu -214 97 2 1637 192 75 23 chr3 15181544 15181669 -202855489 + L1M3 LINE L1 4726 4843 -1303 2246 64 0 55 chr3 15181669 15181981 -202855177 - AluY SINE Alu -16 295 1 1637 192 75 23 chr3 15181981 15182241 -202854917 + L1M3 LINE L1 4843 5131 -1015 2055 101 9 28 chr3 15182921 15183238 -202853920 + AluSx SINE Alu 1 311 -1 1128 149 65 42 chr3 15183677 15183720 -202853438 + L1M3 LINE L1 5106 5147 -1033 1990 133 3 0 chr3 15183720 15184020 -202853138 + AluSc SINE Alu 1 301 -8 1128 149 65 42 chr3 15184020 15184200 -202852958 + L1M3 LINE L1 5147 5333 -847 1564 201 0 3 chr3 15184200 15184503 -202852655 + AluJb SINE Alu 1 302 -10 1128 149 65 42 chr3 15184503 15184649 -202852509 + L1M3 LINE L1 5333 5474 -706 852 194 0 12 chr3 15184650 15184810 -202852348 + FRAM SINE Alu 1 150 -26 36 0 0 0 chr3 15184810 15184846 -202852312 + AT_rich Low_complexity Low_complexity 1 36 0 1929 136 13 3 chr3 15184860 15185176 -202851982 + L1M3 LINE L1 5478 5796 -384 2088 106 0 0 chr3 15185177 15185492 -202851666 + AluSx SINE Alu 1 315 0 28 0 0 0 chr3 15185503 15185531 -202851627 + AT_rich Low_complexity Low_complexity 1 28 0 2304 83 0 0 chr3 15186066 15186368 -202850790 - AluSx SINE Alu -9 303 2 2304 68 7 10 chr3 15186773 15187082 -202850076 + AluY SINE Alu 1 308 -3 2012 104 31 0 chr3 15187443 15187730 -202849428 - AluSx SINE Alu -16 296 1 528 246 87 56 chr3 15187835 15187939 -202849219 - MIR SINE MIR 0 262 163 2188 73 7 13 chr3 15187939 15188239 -202848919 + AluY SINE Alu 1 298 -13 528 246 87 56 chr3 15188239 15188305 -202848853 - MIR SINE MIR -99 163 83 2128 102 14 0 chr3 15188305 15188599 -202848559 + AluSq SINE Alu 1 298 -15 528 246 87 56 chr3 15188599 15188622 -202848536 - MIR SINE MIR -179 83 62 567 160 38 9 chr3 15188727 15188833 -202848325 + L1MB4 LINE L1 5367 5475 -699 853 180 0 18 chr3 15188833 15189000 -202848158 + FRAM SINE Alu 1 156 -20 2230 75 0 0 chr3 15189027 15189351 -202847807 - AluY SINE Alu 0 324 1 1983 151 36 23 chr3 15189365 15189676 -202847482 + L1MB4 LINE L1 5478 5797 -383 1980 113 0 0 chr3 15189676 15189988 -202847170 + AluSx SINE Alu 1 312 0 1983 151 36 23 chr3 15189988 15190065 -202847093 + L1MB4 LINE L1 5797 5872 -308 2144 115 7 0 chr3 15190065 15190370 -202846788 + AluSx SINE Alu 1 307 -5 2165 113 0 0 chr3 15190420 15190731 -202846427 + AluY SINE Alu 1 311 0 275 119 24 0 chr3 15190744 15190786 -202846372 + LTR23 LTR ERV1 317 359 -78 201 263 0 0 chr3 15190786 15190843 -202846315 + A-rich Low_complexity Low_complexity 1 57 0 2088 105 0 32 chr3 15191258 15191573 -202845585 - AluSx SINE Alu -7 305 1 708 172 52 0 chr3 15191770 15191904 -202845254 - FLAM_C SINE Alu -1 142 2 1705 153 7 7 chr3 15191916 15192203 -202844955 - AluJo SINE Alu -25 287 1 921 116 7 14 chr3 15192524 15192671 -202844487 + AluSg/x SINE Alu 157 302 -8 22 0 0 0 chr3 15192853 15192875 -202844283 + AT_rich Low_complexity Low_complexity 1 22 0 2146 91 7 0 chr3 15194509 15194794 -202842364 - AluSg SINE Alu -21 289 3 717 218 0 0 chr3 15194795 15194928 -202842230 - FLAM_C SINE Alu -5 138 6 809 179 0 0 chr3 15196100 15196234 -202840924 + AluJo SINE Alu 1 134 -178 2312 46 7 0 chr3 15196234 15196543 -202840615 + AluY SINE Alu 1 311 0 2048 87 7 14 chr3 15196549 15196869 -202840289 + AluSq SINE Alu 1 318 0 546 292 109 10 chr3 15197185 15197377 -202839781 - MIR SINE MIR -14 248 38 198 283 0 17 chr3 15197528 15197588 -202839570 + L2 LINE L2 3189 3247 -25 1471 128 9 133 chr3 15197604 15197949 -202839209 + AluJo SINE Alu 1 302 -10 207 0 0 0 chr3 15198281 15198304 -202838854 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 808 165 0 0 chr3 15198304 15198425 -202838733 - AluJb SINE Alu -190 122 2 2114 96 0 17 chr3 15198641 15198933 -202838225 - AluSx SINE Alu -16 296 10 22 0 0 0 chr3 15199712 15199734 -202837424 + AT_rich Low_complexity Low_complexity 1 22 0 384 313 27 34 chr3 15200239 15200386 -202836772 - MIR SINE MIR -19 243 98 2168 88 0 38 chr3 15200428 15200746 -202836412 - AluSq SINE Alu -7 306 1 1595 180 20 7 chr3 15200749 15201044 -202836114 - AluJo SINE Alu -8 304 6 189 283 0 33 chr3 15201416 15201476 -202835682 - MIR3 SINE MIR -138 70 13 198 355 32 21 chr3 15201910 15202003 -202835155 - MIR SINE MIR -83 125 32 224 340 68 19 chr3 15202643 15202746 -202834412 + L3 LINE CR1 624 731 -846 1913 174 26 5 chr3 15202865 15203244 -202833914 + L1MB4 LINE L1 5793 6179 -1 229 313 12 0 chr3 15203250 15203333 -202833825 + L1MC/D LINE L1 5814 5897 -1911 24 0 0 0 chr3 15203520 15203544 -202833614 + AT_rich Low_complexity Low_complexity 1 24 0 1894 141 3 19 chr3 15203691 15204004 -202833154 - AluSc SINE Alu -1 308 1 2209 87 0 7 chr3 15204015 15204315 -202832843 - AluY SINE Alu -13 298 1 313 205 169 0 chr3 15204530 15204613 -202832545 + MIR SINE MIR 117 213 -49 646 173 55 0 chr3 15204913 15205023 -202832135 + FLAM_C SINE Alu 2 117 -26 2111 116 7 0 chr3 15205033 15205327 -202831831 + AluSp SINE Alu 1 296 -17 2486 65 0 0 chr3 15205329 15205638 -202831520 + AluSc SINE Alu 1 309 0 1857 84 80 14 chr3 15205648 15205923 -202831235 + AluSg1 SINE Alu 1 293 -16 1781 117 57 11 chr3 15206115 15206396 -202830762 + AluSx SINE Alu 1 294 -18 311 183 158 58 chr3 15207086 15207206 -202829952 + MIR SINE MIR 75 206 -56 21 0 0 0 chr3 15207207 15207228 -202829930 + AT_rich Low_complexity Low_complexity 1 21 0 310 327 175 6 chr3 15207229 15207544 -202829614 + L2 LINE L2 1630 1997 -1317 2748 13 0 3 chr3 15207545 15207857 -202829301 - AluYa5 SINE Alu 0 311 1 1900 100 14 10 chr3 15207863 15208152 -202829006 - AluY SINE Alu -20 291 2 873 110 0 22 chr3 15208152 15208288 -202828870 - AluSq/x SINE Alu -177 135 3 794 176 7 0 chr3 15208294 15208430 -202828728 - FRAM SINE Alu -8 168 32 2132 120 0 0 chr3 15208636 15208935 -202828223 - AluSx SINE Alu -13 299 1 1041 188 0 0 chr3 15208990 15209166 -202827992 - AluJb SINE Alu -15 297 122 270 343 9 26 chr3 15209461 15209680 -202827478 + CT-rich Low_complexity Low_complexity 1 215 0 2116 53 3 73 chr3 15211414 15211740 -202825418 - AluY SINE Alu 0 305 1 374 96 0 0 chr3 15212903 15212955 -202824203 - AluSx SINE Alu -8 293 242 1170 87 0 19 chr3 15212955 15213116 -202824042 - AluSx SINE Alu -154 158 1 2111 114 3 0 chr3 15215303 15215593 -202821565 + AluSg SINE Alu 1 291 -19 301 188 145 34 chr3 15216035 15216152 -202821006 - L1ME4a LINE L1 -16 6105 5976 1368 162 0 26 chr3 15216269 15216498 -202820660 - AluJb SINE Alu -5 307 85 886 125 8 0 chr3 15216532 15216660 -202820498 - FLAM_C SINE Alu -3 130 2 535 87 0 33 chr3 15216689 15216781 -202820377 + FLAM_C SINE Alu 55 143 0 336 324 83 0 chr3 15216833 15216978 -202820180 - MIR3 SINE MIR 0 208 52 22 0 0 0 chr3 15217252 15217274 -202819884 + AT_rich Low_complexity Low_complexity 1 22 0 1529 191 7 7 chr3 15217279 15217562 -202819596 + AluJo SINE Alu 6 288 -24 218 269 104 0 chr3 15217679 15217746 -202819412 - L2 LINE L2 -50 3222 3149 333 176 114 13 chr3 15217994 15218116 -202819042 + L1M4 LINE L1 5226 5364 -815 2030 126 54 0 chr3 15218116 15218410 -202818748 + AluSx SINE Alu 1 310 -2 333 176 114 13 chr3 15218410 15218427 -202818731 + L1M4 LINE L1 5364 5378 -801 540 194 0 0 chr3 15218441 15218539 -202818619 + U13 snRNA snRNA 5 102 -2 1877 142 55 2 chr3 15218560 15219010 -202818148 + L1M2 LINE L1 5193 5778 -534 1198 192 70 18 chr3 15219119 15219405 -202817753 + AluSx SINE Alu 2 302 0 224 304 132 24 chr3 15220171 15220467 -202816691 - L2 LINE L2 -20 3252 2925 2099 145 69 57 chr3 15221181 15221240 -202815918 + MER65A LTR ERV1 1 58 -387 1998 104 46 7 chr3 15221240 15221520 -202815638 + AluSx SINE Alu 1 291 -21 2099 145 69 57 chr3 15221520 15221867 -202815291 + MER65A LTR ERV1 58 412 -33 2525 51 3 13 chr3 15221868 15222182 -202814976 - AluY SINE Alu 0 311 1 1725 176 20 7 chr3 15222185 15222480 -202814678 - AluJo SINE Alu -8 304 6 534 259 113 8 chr3 15222593 15222832 -202814326 + L1ME4a LINE L1 5820 6083 -38 1943 106 50 14 chr3 15223086 15223396 -202813762 + AluSq SINE Alu 1 313 0 428 228 101 10 chr3 15224636 15224828 -202812330 + MLT1H LTR MaLR 20 242 -307 1940 139 10 10 chr3 15224855 15225158 -202812000 + AluSx SINE Alu 1 303 -9 2298 80 3 10 chr3 15225403 15225703 -202811455 + AluY SINE Alu 1 298 -13 180 0 0 0 chr3 15225950 15225970 -202811188 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2400 101 0 0 chr3 15226643 15226949 -202810209 + AluSg SINE Alu 1 306 -4 522 252 8 8 chr3 15226953 15227080 -202810078 + MIR SINE MIR 28 154 -108 2163 117 0 3 chr3 15228307 15228605 -202808553 + AluSx SINE Alu 1 297 -15 8551 120 49 54 chr3 15228616 15228827 -202808331 - L1MA3 LINE L1 -28 6277 6067 2105 132 0 0 chr3 15228827 15229122 -202808036 + AluSx SINE Alu 1 295 -17 8551 120 49 54 chr3 15229122 15229741 -202807417 - L1MA3 LINE L1 -238 6067 5447 6974 57 6 70 chr3 15229741 15230763 -202806395 - SVA Other Other 0 1386 430 8551 120 49 54 chr3 15230763 15230812 -202806346 - L1MA3 LINE L1 -858 5447 5399 6252 65 33 5 chr3 15230812 15231640 -202805518 - SVA Other Other -518 868 18 8551 120 49 54 chr3 15231640 15233283 -202803875 - L1MA3 LINE L1 -906 5399 3781 2291 99 0 10 chr3 15233283 15233586 -202803572 - AluSx SINE Alu -12 300 1 8551 120 49 54 chr3 15233586 15233715 -202803443 - L1MA3 LINE L1 -2524 3781 3653 2245 117 0 0 chr3 15234075 15234375 -202802783 + AluSx SINE Alu 1 300 -12 183 211 158 0 chr3 15234471 15234528 -202802630 + MIR SINE MIR 67 132 -130 1563 108 0 0 chr3 15235801 15236004 -202801154 - AluSg/x SINE Alu -20 290 88 453 292 56 12 chr3 15236783 15236944 -202800214 + MIR SINE MIR 75 242 -20 185 349 40 34 chr3 15237419 15237568 -202799590 + L2 LINE L2 2598 2747 -567 2117 139 0 7 chr3 15237645 15237947 -202799211 - AluSx SINE Alu -12 300 1 1679 116 86 60 chr3 15238098 15238400 -202798758 + AluSx SINE Alu 1 310 -2 2208 110 7 3 chr3 15238558 15238867 -202798291 + AluSx SINE Alu 1 310 -2 2154 23 4 12 chr3 15238964 15239223 -202797935 - L1PA4 LINE L1 0 6155 5899 614 281 95 18 chr3 15239458 15239679 -202797479 - MIR SINE MIR -10 252 15 2130 119 128 44 chr3 15239718 15240131 -202797027 - MER83 LTR ERV1 0 448 1 435 253 89 53 chr3 15240899 15240917 -202796241 + MIR SINE MIR 66 82 -180 2257 102 14 0 chr3 15240917 15241211 -202795947 - AluSq SINE Alu -15 298 1 435 253 89 53 chr3 15241211 15241277 -202795881 + MIR SINE MIR 82 144 -118 2318 73 7 13 chr3 15241277 15241577 -202795581 - AluY SINE Alu -13 298 1 435 253 89 53 chr3 15241577 15241681 -202795477 + MIR SINE MIR 144 262 0 1774 204 0 0 chr3 15241786 15242094 -202795064 + AluJb SINE Alu 1 308 -4 2515 205 57 29 chr3 15242094 15242747 -202794411 + L1MB4 LINE L1 4469 5139 -1007 2290 123 0 0 chr3 15243437 15243746 -202793412 + AluSc SINE Alu 1 309 0 1191 136 57 42 chr3 15243747 15243944 -202793214 + L1MB4 LINE L1 5123 5332 -848 1674 201 0 3 chr3 15243944 15244247 -202792911 + AluJb SINE Alu 1 302 -10 1191 136 57 42 chr3 15244247 15244400 -202792758 + L1MB4 LINE L1 5332 5481 -699 853 200 0 0 chr3 15244404 15244554 -202792604 + FRAM SINE Alu 1 150 -26 36 0 0 0 chr3 15244554 15244590 -202792568 + AT_rich Low_complexity Low_complexity 1 36 0 3741 147 17 44 chr3 15244604 15244921 -202792237 + L1MB4 LINE L1 5478 5802 -378 2213 106 0 0 chr3 15244921 15245236 -202791922 + AluSx SINE Alu 1 315 0 3741 147 17 44 chr3 15245236 15245249 -202791909 + L1MB4 LINE L1 5802 5814 -366 225 0 0 0 chr3 15245249 15245274 -202791884 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2488 69 0 0 chr3 15245278 15245569 -202791589 - AluY SINE Alu -20 291 1 3741 147 17 44 chr3 15245569 15245953 -202791205 + L1MB4 LINE L1 5817 6179 -1 237 313 12 0 chr3 15245959 15246042 -202791116 + L1MC/D LINE L1 5814 5897 -1911 23 0 0 0 chr3 15246236 15246259 -202790899 + AT_rich Low_complexity Low_complexity 1 23 0 2631 55 0 0 chr3 15246317 15246626 -202790532 + AluY SINE Alu 1 309 -2 534 103 0 0 chr3 15246626 15246704 -202790454 + (TA)n Simple_repeat Simple_repeat 2 79 0 1774 145 0 4 chr3 15246805 15247090 -202790068 - AluJb SINE Alu 0 306 23 191 143 114 0 chr3 15247291 15247326 -202789832 + L2 LINE L2 3221 3259 -13 228 86 0 0 chr3 15247471 15247506 -202789652 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 7480 18 1 0 chr3 15247506 15248345 -202788813 - L1PA3 LINE L1 -6 6149 5310 1322 104 0 6 chr3 15248345 15248518 -202788640 + AluSg/x SINE Alu 122 293 -17 266 179 179 32 chr3 15249168 15249263 -202787895 + MIR SINE MIR 75 183 -79 21 0 0 0 chr3 15249289 15249310 -202787848 + AT_rich Low_complexity Low_complexity 1 21 0 199 327 175 6 chr3 15249311 15249626 -202787532 + L2 LINE L2 1630 1997 -1317 2902 10 0 3 chr3 15249626 15249938 -202787220 - AluYa5 SINE Alu 0 311 1 2121 111 17 0 chr3 15249944 15250232 -202786926 - AluSp SINE Alu -20 293 1 2482 70 3 0 chr3 15250393 15250692 -202786466 - AluY SINE Alu -9 302 3 267 357 60 12 chr3 15250973 15251225 -202785933 + L2 LINE L2 2806 3069 -203 2202 113 0 3 chr3 15252432 15252734 -202784424 + AluSq SINE Alu 1 301 -12 497 289 81 9 chr3 15254085 15254296 -202782862 + L3 LINE CR1 626 851 -726 2403 83 0 3 chr3 15254684 15254984 -202782174 + AluY SINE Alu 1 299 -12 2265 115 0 0 chr3 15255137 15255441 -202781717 + AluSg SINE Alu 1 304 -6 2355 104 0 0 chr3 15255570 15255877 -202781281 + AluY SINE Alu 2 308 -3 273 119 24 0 chr3 15255893 15255935 -202781223 + LTR23 LTR ERV1 317 359 -78 210 259 0 0 chr3 15255935 15255993 -202781165 + A-rich Low_complexity Low_complexity 1 58 0 372 96 0 0 chr3 15256439 15256491 -202780667 - AluSx SINE Alu -8 293 242 1241 87 0 19 chr3 15256491 15256652 -202780506 - AluSx SINE Alu -154 158 1 2111 114 3 0 chr3 15258842 15259132 -202778026 + AluSg SINE Alu 1 291 -19 301 188 145 34 chr3 15259579 15259696 -202777462 - L1ME4a LINE L1 -16 6105 5976 1818 162 3 23 chr3 15259813 15260122 -202777036 - AluJb SINE Alu -5 307 5 280 170 0 19 chr3 15260521 15260574 -202776584 - MER5B DNA MER1_type -122 56 5 2433 72 7 7 chr3 15260702 15261008 -202776150 + AluY SINE Alu 1 306 -5 24 0 0 0 chr3 15261456 15261480 -202775678 + AT_rich Low_complexity Low_complexity 1 24 0 233 311 0 0 chr3 15261839 15261900 -202775258 - L2 LINE L2 -1 3271 3211 2353 103 0 3 chr3 15262157 15262458 -202774700 + AluSx SINE Alu 1 300 -12 2178 109 0 3 chr3 15262750 15263033 -202774125 + AluSx SINE Alu 5 286 -26 277 70 70 0 chr3 15263188 15263231 -202773927 + MADE1 DNA Mariner 35 80 0 682 130 30 0 chr3 15263386 15263486 -202773672 - U6 snRNA snRNA -4 103 1 445 275 76 65 chr3 15263503 15263885 -202773273 - L1ME LINE L1 -439 5682 5297 1441 174 0 38 chr3 15263919 15264183 -202772975 + AluJb SINE Alu 28 281 -31 751 168 0 24 chr3 15264359 15264484 -202772674 - FLAM_C SINE Alu -20 123 2 983 115 7 14 chr3 15264807 15264955 -202772203 + AluSg/x SINE Alu 159 305 -7 22 0 0 0 chr3 15265136 15265158 -202772000 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr3 15266352 15266394 -202770764 + AT_rich Low_complexity Low_complexity 1 42 0 1736 155 3 13 chr3 15266692 15266995 -202770163 - AluSc SINE Alu -9 300 1 2513 56 0 0 chr3 15267041 15267343 -202769815 + AluY SINE Alu 1 302 -9 28 29 0 0 chr3 15267526 15267561 -202769597 + AT_rich Low_complexity Low_complexity 1 35 0 1773 130 40 10 chr3 15267614 15267913 -202769245 - AluSx SINE Alu -4 308 1 1226 181 3 84 chr3 15268436 15268756 -202768402 + AluJo SINE Alu 1 294 -18 469 245 29 103 chr3 15268823 15268903 -202768255 + MER5A DNA MER1_type 1 85 -104 2102 94 7 0 chr3 15268903 15269190 -202767968 + AluSx SINE Alu 7 295 -17 469 245 29 103 chr3 15269190 15269313 -202767845 + MER5A DNA MER1_type 85 189 0 2441 57 3 0 chr3 15269520 15269820 -202767338 - AluY SINE Alu -10 301 1 2137 99 3 3 chr3 15270131 15270423 -202766735 - AluSx SINE Alu -20 292 1 1292 111 0 115 chr3 15270594 15270644 -202766514 + L1PB1 LINE L1 5926 5980 -171 2132 113 0 0 chr3 15270644 15270944 -202766214 + AluSq SINE Alu 1 300 -13 1964 91 7 14 chr3 15270954 15271262 -202765896 + AluSx SINE Alu 1 306 0 1292 111 0 115 chr3 15271262 15271452 -202765706 + L1PB1 LINE L1 5990 6149 -2 1498 167 17 38 chr3 15271529 15271822 -202765336 - AluJo SINE Alu -25 287 1 231 337 87 0 chr3 15272087 15272179 -202764979 - MIR SINE MIR -64 144 45 481 233 0 0 chr3 15272731 15272817 -202764341 - L2 LINE L2 -33 3239 3154 953 78 39 0 chr3 15272975 15273103 -202764055 - AluSq/x SINE Alu -179 133 1 2426 60 0 3 chr3 15273114 15273416 -202763742 - AluY SINE Alu -10 301 1 196 315 11 22 chr3 15273417 15273506 -202763652 - L2 LINE L2 -236 3036 2949 335 332 175 15 chr3 15273612 15273880 -202763278 + L2 LINE L2 2924 3234 -38 373 217 26 11 chr3 15273946 15274102 -202763056 - MIR SINE MIR -37 225 3 183 280 192 48 chr3 15274112 15274237 -202762921 - MIR SINE MIR -1 261 119 610 261 112 11 chr3 15275067 15275255 -202761903 + MIR SINE MIR 38 244 -18 195 42 0 0 chr3 15275582 15275606 -202761552 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 298 237 130 46 chr3 15275649 15275780 -202761378 + L2 LINE L2 3160 3301 -12 1650 121 3 112 chr3 15275783 15276122 -202761036 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr3 15276343 15276371 -202760787 + AT_rich Low_complexity Low_complexity 1 28 0 827 143 8 0 chr3 15276446 15276572 -202760586 - FLAM_C SINE Alu -16 127 1 320 113 0 0 chr3 15276783 15276836 -202760322 - Alu SINE Alu -1 301 249 471 114 0 0 chr3 15277118 15277188 -202759970 - L1MB7 LINE L1 -52 6132 6063 547 159 7 80 chr3 15277794 15277810 -202759348 - LTR37A LTR ERV1 -52 374 358 1771 149 45 0 chr3 15277810 15278099 -202759059 + AluSx SINE Alu 1 302 -10 547 159 7 80 chr3 15278099 15278220 -202758938 - LTR37A LTR ERV1 -68 358 247 631 154 19 0 chr3 15278222 15278326 -202758832 + FLAM_C SINE Alu 2 107 -36 434 88 0 0 chr3 15278363 15278420 -202758738 + FLAM_A SINE Alu 50 106 -36 452 152 10 0 chr3 15278427 15278526 -202758632 + (CA)n Simple_repeat Simple_repeat 2 101 0 851 186 162 25 chr3 15278526 15278730 -202758428 + AluJo SINE Alu 76 307 -5 206 362 43 0 chr3 15278988 15279082 -202758076 - MIR SINE MIR -116 146 49 287 226 49 78 chr3 15279109 15279211 -202757947 - L2 LINE L2 -1 3312 3214 254 235 235 0 chr3 15279195 15279293 -202757865 + L2 LINE L2 3192 3312 -1 * 2009 122 0 3 chr3 15279637 15279932 -202757226 + AluSx SINE Alu 1 294 -18 1418 211 65 0 chr3 15280039 15280380 -202756778 - L1MB4 LINE L1 0 6180 5818 1839 84 81 15 chr3 15280380 15280653 -202756505 - AluSg1 SINE Alu -18 291 1 2486 65 0 0 chr3 15280663 15280972 -202756186 - AluSc SINE Alu 0 309 1 1280 180 103 4 chr3 15281322 15281594 -202755564 - AluJo SINE Alu -13 299 1 330 284 149 14 chr3 15281694 15281842 -202755316 - MIR SINE MIR -73 189 22 1961 111 27 10 chr3 15282282 15282579 -202754579 - AluSx SINE Alu -10 302 1 1970 145 7 0 chr3 15282612 15282922 -202754236 - AluSx SINE Alu 0 312 1 1828 37 37 0 chr3 15283807 15284050 -202753108 - SVA Other Other -1117 269 18 8487 144 62 29 chr3 15284050 15285693 -202751465 - L1M1 LINE L1 -743 5403 3776 2163 99 0 10 chr3 15285693 15285996 -202751162 - AluSx SINE Alu -12 300 1 8487 144 62 29 chr3 15285996 15286125 -202751033 - L1M1 LINE L1 -2370 3776 3653 2118 117 0 0 chr3 15286485 15286785 -202750373 + AluSx SINE Alu 1 300 -12 181 283 75 57 chr3 15286882 15286988 -202750170 + MER5C DNA MER1_type 4 111 -213 1477 108 0 0 chr3 15288211 15288414 -202748744 - AluSg/x SINE Alu -20 292 90 482 301 44 22 chr3 15289193 15289376 -202747782 + MIR SINE MIR 75 261 -1 228 322 54 47 chr3 15289829 15289978 -202747180 + L2 LINE L2 2598 2747 -567 2062 120 0 10 chr3 15290055 15290355 -202746803 - AluSc SINE Alu -12 297 1 1795 109 75 31 chr3 15290426 15290561 -202746597 + AluSq SINE Alu 1 129 -184 2232 82 0 7 chr3 15290561 15290867 -202746291 + AluY SINE Alu 2 305 -6 1795 109 75 31 chr3 15290867 15291024 -202746134 + AluSq SINE Alu 129 306 -7 207 0 0 0 chr3 15291167 15291190 -202745968 + (T)n Simple_repeat Simple_repeat 1 23 0 2249 99 7 0 chr3 15291578 15291880 -202745278 + AluSq SINE Alu 1 304 -9 770 186 170 0 chr3 15292072 15292260 -202744898 + MER46B DNA MER2_type 1 95 -141 346 113 65 0 chr3 15292260 15292322 -202744836 + MER21B LTR ERV1 3 68 -863 899 141 7 0 chr3 15292322 15292464 -202744694 - AluJo SINE Alu -150 162 20 1038 137 71 18 chr3 15292472 15292713 -202744445 + MER21B LTR ERV1 214 487 -376 350 176 32 12 chr3 15292713 15292937 -202744221 + AluJo SINE Alu 1 294 -8 * 1646 178 75 42 chr3 15292931 15293291 -202743867 + MER21A LTR ERV1 560 931 0 927 133 21 0 chr3 15293291 15293434 -202743724 + MER46B DNA MER2_type 91 236 0 1549 132 115 65 chr3 15294043 15294273 -202742885 - THE1C LTR MaLR -1 374 118 2300 93 0 0 chr3 15294273 15294575 -202742583 + AluSg1 SINE Alu 1 302 -7 1549 132 115 65 chr3 15294575 15294700 -202742458 - THE1C LTR MaLR -257 118 1 780 135 23 23 chr3 15294967 15295100 -202742058 + FLAM_C SINE Alu 1 133 0 2010 119 20 3 chr3 15295168 15295471 -202741687 - AluSx SINE Alu -4 308 1 755 139 14 83 chr3 15295473 15295617 -202741541 - AluJo SINE Alu -177 135 2 222 219 0 16 chr3 15295618 15295682 -202741476 + T-rich Low_complexity Low_complexity 1 63 0 709 139 42 69 chr3 15295684 15295703 -202741455 - FLAM_C SINE Alu -171 141 123 2444 54 0 6 chr3 15295703 15296016 -202741142 - AluY SINE Alu 0 311 1 2110 112 7 0 chr3 15296019 15296314 -202740844 - AluSp SINE Alu -16 297 1 709 139 42 69 chr3 15296314 15296434 -202740724 - FLAM_C SINE Alu -191 121 2 438 251 131 0 chr3 15296447 15296638 -202740520 + L1ME LINE L1 5603 5818 -303 22 35 0 0 chr3 15296697 15296726 -202740432 + AT_rich Low_complexity Low_complexity 1 29 0 2218 91 0 3 chr3 15296767 15297063 -202740095 + AluSc SINE Alu 1 295 -14 2261 98 3 0 chr3 15297237 15297544 -202739614 + AluSp SINE Alu 1 308 -5 2091 126 0 7 chr3 15297609 15297919 -202739239 - AluSx SINE Alu -4 308 1 751 237 6 17 chr3 15297943 15298120 -202739038 + MER5B DNA MER1_type 4 178 0 449 226 182 17 chr3 15298291 15298348 -202738810 + MIR SINE MIR 2 48 -214 2335 171 88 11 chr3 15298348 15298792 -202738366 - MER66A LTR ERV1 0 478 1 449 226 182 17 chr3 15298792 15298915 -202738243 + MIR SINE MIR 48 212 -50 430 304 22 77 chr3 15299734 15300007 -202737151 - MIR SINE MIR 0 262 5 290 294 125 22 chr3 15300034 15300170 -202736988 + MIR SINE MIR 61 210 -52 760 215 101 0 chr3 15300259 15300417 -202736741 + MIR SINE MIR 86 259 -3 350 115 16 0 chr3 15300418 15300479 -202736679 + (TA)n Simple_repeat Simple_repeat 1 62 0 823 157 30 139 chr3 15300509 15300841 -202736317 - AluSx SINE Alu -6 296 1 1152 140 36 59 chr3 15300990 15301171 -202735987 - AluJo SINE Alu -9 303 126 2280 71 0 20 chr3 15301171 15301468 -202735690 + AluSg SINE Alu 1 291 -19 1152 140 36 59 chr3 15301468 15301508 -202735650 - AluJo SINE Alu -186 126 87 424 233 158 14 chr3 15301511 15301657 -202735501 + L2 LINE L2 3131 3297 -16 * 482 267 12 121 chr3 15301652 15301885 -202735273 + L2 LINE L2 3025 3215 -98 2291 85 3 0 chr3 15301885 15302190 -202734968 - AluSg SINE Alu -4 306 1 482 267 12 121 chr3 15302190 15302278 -202734880 + L2 LINE L2 3215 3311 -2 203 0 37 0 chr3 15303044 15303071 -202734087 + (TG)n Simple_repeat Simple_repeat 2 29 0 1558 81 5 5 chr3 15303122 15303332 -202733826 - AluSq SINE Alu -28 285 76 2467 46 7 3 chr3 15303333 15303640 -202733518 - AluY SINE Alu -3 308 1 599 114 0 0 chr3 15303644 15303723 -202733435 - AluSq SINE Alu -232 80 2 499 172 90 46 chr3 15304056 15304208 -202732950 + MIR SINE MIR 43 211 -51 2063 113 10 0 chr3 15304252 15304553 -202732605 - AluSx SINE Alu -6 306 3 2065 167 109 13 chr3 15304720 15305026 -202732132 - L1MB8 LINE L1 -9 6169 5805 2290 83 0 3 chr3 15305026 15305326 -202731832 - AluY SINE Alu -12 299 1 2065 167 109 13 chr3 15305326 15305467 -202731691 - L1MB8 LINE L1 -373 5805 5679 1289 195 33 0 chr3 15305467 15305708 -202731450 - AluJb SINE Alu -63 249 1 1310 146 77 16 chr3 15305709 15305810 -202731348 - L1MB8 LINE L1 -571 5607 5514 2244 106 3 0 chr3 15305810 15306121 -202731037 - AluSx SINE Alu 0 312 1 1310 146 77 16 chr3 15306121 15306265 -202730893 - L1MB8 LINE L1 -664 5514 5347 446 167 205 1 chr3 15306351 15306499 -202730659 + L2 LINE L2 2827 3000 -313 1586 214 112 47 chr3 15306503 15306541 -202730617 - MLT1D LTR MaLR -2 503 469 4351 149 75 92 chr3 15306541 15307630 -202729528 - MER11C LTR ERVK 0 1071 1 1586 214 112 47 chr3 15307630 15308063 -202729095 - MLT1D LTR MaLR -36 469 1 459 225 0 42 chr3 15308208 15308328 -202728830 + L2 LINE L2 3180 3294 -19 332 276 131 14 chr3 15308868 15309013 -202728145 + MIR SINE MIR 46 207 -55 542 200 0 0 chr3 15309228 15309318 -202727840 + AluJ/FLAM SINE Alu 2 91 -221 487 90 0 0 chr3 15309315 15309382 -202727776 - Alu SINE Alu -242 68 2 * 195 100 0 0 chr3 15309807 15309837 -202727321 + (GGAAA)n Simple_repeat Simple_repeat 2 31 0 650 245 11 5 chr3 15310342 15310530 -202726628 - AluSx SINE Alu -119 193 5 305 170 0 19 chr3 15310930 15310983 -202726175 - MER5B DNA MER1_type -122 56 5 2299 68 0 34 chr3 15311111 15311433 -202725725 + AluY SINE Alu 1 311 0 2238 88 13 0 chr3 15311483 15311788 -202725370 + AluY SINE Alu 1 309 -2 192 314 157 33 chr3 15312176 15312297 -202724861 - L2 LINE L2 -1 3271 3136 318 211 76 27 chr3 15313042 15313198 -202723960 + MLT1H LTR MaLR 20 223 -326 1592 184 11 0 chr3 15314871 15315181 -202721977 + AluJb SINE Alu 6 312 0 1932 185 54 76 chr3 15315182 15315446 -202721712 + L1MB4 LINE L1 4472 4740 -1406 2089 103 0 7 chr3 15315446 15315736 -202721422 - AluY SINE Alu -23 288 1 1932 185 54 76 chr3 15315736 15315860 -202721298 + L1MB4 LINE L1 4740 4865 -1281 2220 67 0 55 chr3 15315860 15316172 -202720986 - AluY SINE Alu -16 295 1 1932 185 54 76 chr3 15316172 15316432 -202720726 + L1MB4 LINE L1 4865 5131 -1015 2055 101 9 28 chr3 15317112 15317429 -202719729 + AluSx SINE Alu 1 311 -1 1994 184 44 58 chr3 15317870 15317913 -202719245 + L1MB4 LINE L1 5106 5148 -1032 1990 133 3 0 chr3 15317913 15318213 -202718945 + AluSc SINE Alu 1 301 -8 1994 184 44 58 chr3 15318213 15318394 -202718764 + L1MB4 LINE L1 5148 5330 -850 1423 229 0 3 chr3 15318394 15318699 -202718459 + AluJb SINE Alu 1 304 -8 1994 184 44 58 chr3 15318699 15318858 -202718300 + L1MB4 LINE L1 5330 5490 -690 928 171 0 6 chr3 15318858 15319016 -202718142 + FRAM SINE Alu 1 157 -9 1994 184 44 58 chr3 15319016 15319043 -202718115 + L1MB4 LINE L1 5490 5516 -664 2238 71 0 0 chr3 15319043 15319367 -202717791 - AluY SINE Alu 0 324 1 1994 184 44 58 chr3 15319367 15319692 -202717466 + L1MB4 LINE L1 5516 5794 -386 1980 113 0 0 chr3 15319692 15320004 -202717154 + AluSx SINE Alu 1 312 0 1994 184 44 58 chr3 15320004 15320082 -202717076 + L1MB4 LINE L1 5794 5872 -308 961 83 0 0 chr3 15320082 15320214 -202716944 + AluY SINE Alu 1 132 -179 1501 161 38 3 chr3 15320229 15320520 -202716638 + L1MB4 LINE L1 5859 6159 -21 315 329 12 0 chr3 15320534 15320616 -202716542 + L1MC4a LINE L1 5815 5897 -1911 24 0 0 0 chr3 15320802 15320826 -202716332 + AT_rich Low_complexity Low_complexity 1 24 0 1787 139 0 20 chr3 15320973 15321268 -202715890 - AluJb SINE Alu -1 311 23 227 191 85 0 chr3 15321469 15321516 -202715642 + L2 LINE L2 3221 3271 -1 1105 133 0 6 chr3 15321630 15321803 -202715355 + AluSg/x SINE Alu 117 288 -24 2020 104 7 10 chr3 15322580 15322888 -202714270 + AluSx SINE Alu 1 307 -5 24 0 0 0 chr3 15323336 15323360 -202713798 + AT_rich Low_complexity Low_complexity 1 24 0 257 311 0 0 chr3 15323719 15323780 -202713378 - L2 LINE L2 -1 3271 3211 238 234 104 13 chr3 15324035 15324189 -202712969 + AluY SINE Alu 14 132 -169 1996 136 0 7 chr3 15325567 15325869 -202711289 - AluSx SINE Alu -12 300 1 2092 97 0 10 chr3 15326265 15326565 -202710593 - AluSx SINE Alu -14 298 2 834 128 15 0 chr3 15327040 15327173 -202709985 + AluSg/x SINE Alu 172 306 -6 499 172 90 46 chr3 15327206 15327358 -202709800 - MIR SINE MIR -51 211 43 2282 94 0 0 chr3 15327690 15327988 -202709170 + AluSq SINE Alu 1 298 -15 1302 160 86 26 chr3 15328129 15328397 -202708761 + AluJo SINE Alu 1 284 -28 1595 180 20 7 chr3 15328609 15328904 -202708254 + AluJo SINE Alu 6 304 -8 1883 129 7 3 chr3 15328907 15329210 -202707948 + AluSx SINE Alu 1 304 -8 1946 213 101 17 chr3 15329218 15329735 -202707423 + L1ME1 LINE L1 5480 6039 -127 635 76 0 0 chr3 15329748 15329827 -202707331 - AluSg/x SINE Alu -14 295 217 1416 154 0 51 chr3 15329999 15330311 -202706847 - AluY SINE Alu -1 300 5 28 0 0 0 chr3 15331922 15331950 -202705208 + AT_rich Low_complexity Low_complexity 1 28 0 1961 105 7 7 chr3 15332000 15332295 -202704863 + AluSc SINE Alu 1 295 -14 2317 70 3 3 chr3 15332835 15333134 -202704024 + AluY SINE Alu 1 299 -12 296 234 168 0 chr3 15333274 15333381 -202703777 - MIR SINE MIR -68 140 16 358 58 115 0 chr3 15333519 15333571 -202703587 + L1ME3 LINE L1 6093 6150 -12 2428 70 0 3 chr3 15333576 15333888 -202703270 - AluY SINE Alu 0 311 1 449 62 10 82 chr3 15334064 15334102 -202703056 - L1MB3 LINE L1 0 6183 6144 1673 123 0 12 chr3 15334102 15334355 -202702803 - AluSx SINE Alu -14 298 49 449 62 10 82 chr3 15334355 15334413 -202702745 - L1MB3 LINE L1 -39 6144 6094 790 43 0 52 chr3 15334439 15334555 -202702603 + L1PA6 LINE L1 6045 6154 0 924 153 12 116 chr3 15334575 15334816 -202702342 + AluJo SINE Alu 86 301 -11 1370 153 17 83 chr3 15334827 15335127 -202702031 - AluJo SINE Alu -30 282 3 327 377 84 0 chr3 15335393 15335560 -202701598 + L2 LINE L2 2568 2748 -566 1839 112 0 4 chr3 15335584 15335852 -202701306 + AluSc SINE Alu 18 284 -25 1816 109 10 55 chr3 15335885 15336196 -202700962 + AluSx SINE Alu 1 297 -15 258 330 21 0 chr3 15336426 15336523 -202700635 + L2 LINE L2 3085 3183 -89 2282 50 0 0 chr3 15336670 15336974 -202700184 + AluSg SINE Alu 1 304 0 206 263 53 0 chr3 15336979 15337055 -202700103 + MIR SINE MIR 64 143 -119 1932 121 0 7 chr3 15337746 15338044 -202699114 - AluJb SINE Alu -14 298 3 546 115 73 10 chr3 15338072 15338168 -202698990 - U13 snRNA snRNA 0 104 3 357 325 69 65 chr3 15338317 15338475 -202698683 - L2 LINE L2 -1 3312 3151 2238 92 3 0 chr3 15338475 15338770 -202698388 + AluSg SINE Alu 1 296 -14 357 325 69 65 chr3 15338770 15338857 -202698301 - L2 LINE L2 -162 3151 3066 1913 132 7 0 chr3 15338952 15339240 -202697918 - AluSx SINE Alu -22 290 1 195 279 0 0 chr3 15339273 15339316 -202697842 - MIR SINE MIR -27 235 193 1865 136 4 0 chr3 15339389 15339668 -202697490 + AluJb SINE Alu 19 298 -14 2054 112 7 3 chr3 15339944 15340248 -202696910 + AluSx SINE Alu 1 305 -7 1915 135 13 7 chr3 15340484 15340788 -202696370 + AluJb SINE Alu 1 306 -6 2120 94 0 13 chr3 15340906 15341205 -202695953 + AluY SINE Alu 1 295 -16 635 76 0 0 chr3 15341382 15341461 -202695697 + Alu SINE Alu 220 298 -14 2179 189 85 62 chr3 15341474 15342000 -202695158 - L1ME1 LINE L1 -127 6039 5496 2335 70 7 0 chr3 15342000 15342301 -202694857 - AluY SINE Alu -8 303 1 2179 189 85 62 chr3 15342301 15342387 -202694771 - L1ME1 LINE L1 -670 5496 5413 6193 133 291 14 chr3 15342387 15343715 -202693443 + pTR5 LTR ERV1 743 2438 0 358 148 0 0 chr3 15343716 15343770 -202693388 - L1ME1 LINE L1 -748 5418 5365 988 196 56 82 chr3 15343787 15343997 -202693161 + AluJb SINE Alu 1 215 -97 1567 101 0 0 chr3 15343997 15344206 -202692952 + AluSq SINE Alu 1 209 -104 3440 109 77 38 chr3 15344206 15344764 -202692394 - LTR19B LTR ERV1 0 580 1 988 196 56 82 chr3 15344764 15344858 -202692300 + AluJb SINE Alu 213 298 -14 851 190 25 25 chr3 15344858 15345058 -202692100 - L1MA9 LINE L1 -178 6134 5935 2109 92 7 0 chr3 15345074 15345356 -202691802 - AluSq SINE Alu -28 285 2 1892 142 55 2 chr3 15345357 15345809 -202691349 - L1MA9 LINE L1 -532 5780 5193 539 194 0 0 chr3 15345830 15345928 -202691230 - U13 snRNA snRNA -2 102 5 324 183 92 8 chr3 15345942 15345959 -202691199 - L1ME1 LINE L1 -791 5375 5361 1897 129 54 0 chr3 15345959 15346253 -202690905 - AluSx SINE Alu -2 310 1 324 183 92 8 chr3 15346253 15346375 -202690783 - L1ME1 LINE L1 -805 5361 5226 239 269 104 0 chr3 15346623 15346690 -202690468 + L2 LINE L2 3149 3222 -50 1426 191 7 7 chr3 15346807 15347090 -202690068 - AluJo SINE Alu -24 288 6 22 0 0 0 chr3 15347095 15347117 -202690041 + AT_rich Low_complexity Low_complexity 1 22 0 405 307 129 6 chr3 15347373 15347536 -202689622 + MIR3 SINE MIR 26 208 0 533 87 0 33 chr3 15347588 15347680 -202689478 - FLAM_C SINE Alu 0 143 55 969 115 0 0 chr3 15347709 15347839 -202689319 + FLAM_C SINE Alu 2 131 -2 1497 136 0 0 chr3 15347872 15348100 -202689058 + AluSg/x SINE Alu 85 312 0 1821 143 0 31 chr3 15348180 15348500 -202688658 - AluSx SINE Alu 0 311 1 708 172 52 0 chr3 15348697 15348831 -202688327 - FLAM_C SINE Alu -1 142 2 1775 149 3 7 chr3 15348843 15349131 -202688027 - AluJo SINE Alu -25 287 1 1122 111 81 77 chr3 15349159 15349394 -202687764 - MER46A DNA MER2_type 0 236 1 892 29 0 0 chr3 15349534 15349639 -202687519 - AluSc SINE Alu -204 105 1 1165 150 13 44 chr3 15349879 15350106 -202687052 - AluJo SINE Alu -18 294 75 29 0 0 0 chr3 15350126 15350155 -202687003 + AT_rich Low_complexity Low_complexity 1 29 0 2002 99 0 4 chr3 15350191 15350464 -202686694 + AluSc SINE Alu 2 273 -36 750 44 0 0 chr3 15350464 15350555 -202686603 + AluY SINE Alu 210 300 -11 564 257 29 14 chr3 15350567 15350707 -202686451 + MIR SINE MIR 46 187 -75 216 176 149 54 chr3 15350748 15350822 -202686336 - MIR SINE MIR -64 144 64 1435 110 55 0 chr3 15350904 15351122 -202686036 + MER30 DNA MER1_type 1 230 0 2239 80 0 10 chr3 15351223 15351523 -202685635 - AluY SINE Alu -14 297 1 1126 194 21 14 chr3 15351691 15351970 -202685188 - AluJb SINE Alu -21 291 11 921 109 132 23 chr3 15352496 15352653 -202684505 - AluSq SINE Alu -1 312 133 2217 81 0 13 chr3 15352653 15352962 -202684196 - AluY SINE Alu -6 305 1 921 109 132 23 chr3 15352962 15352978 -202684180 - AluSq SINE Alu -180 133 120 1583 156 17 31 chr3 15353123 15353411 -202683747 + AluJo SINE Alu 17 300 -12 2750 3 0 0 chr3 15353608 15353912 -202683246 - AluYa5 SINE Alu -7 304 1 1716 131 38 14 chr3 15353981 15354271 -202682887 - AluSx SINE Alu -15 297 1 931 84 0 0 chr3 15354452 15354571 -202682587 - AluY SINE Alu -192 119 1 533 87 0 33 chr3 15354599 15354691 -202682467 + FLAM_A SINE Alu 54 142 0 24 0 0 0 chr3 15354771 15354795 -202682363 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 15355162 15355183 -202681975 + AT_rich Low_complexity Low_complexity 1 21 0 312 170 0 0 chr3 15355607 15355660 -202681498 + Alu SINE Alu 243 295 -7 2052 123 0 23 chr3 15355660 15355969 -202681189 + AluSx SINE Alu 1 302 -10 25 0 0 0 chr3 15356015 15356040 -202681118 + AT_rich Low_complexity Low_complexity 1 25 0 254 0 0 77 chr3 15356307 15356346 -202680812 + (C)n Simple_repeat Simple_repeat 1 36 0 29 28 0 0 chr3 15357081 15357117 -202680041 + AT_rich Low_complexity Low_complexity 1 36 0 184 148 0 0 chr3 15357465 15357492 -202679666 + MIR3 SINE MIR 155 181 -27 898 142 58 0 chr3 15357528 15357683 -202679475 + AluSg/x SINE Alu 137 300 -12 1792 144 0 63 chr3 15357894 15358227 -202678931 + AluJb SINE Alu 1 312 0 746 132 0 0 chr3 15358382 15358488 -202678670 - AluSq/x SINE Alu -206 107 2 1851 126 7 0 chr3 15358522 15358807 -202678351 - AluSx SINE Alu -25 287 1 852 158 0 0 chr3 15358826 15358984 -202678174 + AluSg/x SINE Alu 130 287 -25 493 283 107 0 chr3 15359913 15360072 -202677086 - AluSp SINE Alu -17 296 121 26 30 0 0 chr3 15360237 15360270 -202676888 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr3 15360778 15360814 -202676344 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr3 15360814 15360841 -202676317 + GC_rich Low_complexity Low_complexity 1 27 0 5077 76 4 20 chr3 15361112 15361812 -202675346 - L1PA6 LINE L1 -11 6143 5455 1088 82 7 0 chr3 15362247 15362393 -202674765 + AluY SINE Alu 158 304 -7 920 77 0 0 chr3 15362394 15362511 -202674647 - AluSg SINE Alu -193 117 1 925 273 29 25 chr3 15362560 15362802 -202674356 - MIR SINE MIR -4 258 16 22 0 0 0 chr3 15363372 15363394 -202673764 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 15363709 15363737 -202673421 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 15363942 15363966 -202673192 + GC_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr3 15364200 15364220 -202672938 + (T)n Simple_repeat Simple_repeat 1 20 0 1631 84 5 0 chr3 15364510 15364725 -202672433 - AluSp SINE Alu -97 216 1 2246 88 0 3 chr3 15364899 15365195 -202671963 - AluSc SINE Alu -14 295 1 615 203 181 0 chr3 15365211 15365349 -202671809 + FRAM SINE Alu 1 158 -18 1883 153 0 0 chr3 15365376 15365670 -202671488 + AluSx SINE Alu 1 294 -18 405 250 56 0 chr3 15366641 15366749 -202670409 + L2 LINE L2 3191 3304 -9 204 40 0 0 chr3 15366868 15366893 -202670265 + (A)n Simple_repeat Simple_repeat 1 25 0 718 225 23 6 chr3 15367077 15367250 -202669908 + MER5B DNA MER1_type 1 176 -2 2493 82 0 0 chr3 15368331 15368634 -202668524 + AluSx SINE Alu 1 303 -9 2282 127 0 3 chr3 15369161 15369469 -202667689 + AluSx SINE Alu 1 307 -5 2416 68 3 19 chr3 15369592 15369902 -202667256 + AluSp SINE Alu 1 305 -8 382 313 27 34 chr3 15370185 15370332 -202666826 - MIR SINE MIR -19 243 98 2222 108 7 7 chr3 15370374 15370680 -202666478 - AluSq SINE Alu -7 306 1 2319 110 0 3 chr3 15370690 15370990 -202666168 - AluSx SINE Alu -13 299 1 337 302 102 50 chr3 15371071 15371107 -202666051 - L2 LINE L2 -567 2747 2714 2322 75 0 56 chr3 15371107 15371428 -202665730 - AluSx SINE Alu -9 303 1 337 302 102 50 chr3 15371428 15371775 -202665383 - L2 LINE L2 -600 2714 2344 411 247 131 73 chr3 15372304 15372563 -202664595 + MLT1K LTR MaLR 153 426 -162 198 143 0 0 chr3 15372726 15372761 -202664397 + (TG)n Simple_repeat Simple_repeat 2 36 0 362 56 0 19 chr3 15372887 15372941 -202664217 + (CA)n Simple_repeat Simple_repeat 1 53 0 2547 68 3 0 chr3 15373021 15373329 -202663829 - AluY SINE Alu -2 309 1 311 333 0 60 chr3 15373363 15373513 -202663645 - MIR3 SINE MIR -67 141 1 247 326 45 11 chr3 15373563 15373652 -202663506 + L2 LINE L2 2957 3048 -224 1411 234 55 18 chr3 15373683 15374081 -202663077 + MLT1J LTR MaLR 99 511 0 543 311 83 19 chr3 15374150 15374207 -202662951 + L2 LINE L2 2693 2745 -569 2329 118 7 0 chr3 15374207 15374512 -202662646 + AluSx SINE Alu 1 307 -5 543 311 83 19 chr3 15374512 15374718 -202662440 + L2 LINE L2 2745 2973 -341 285 261 194 45 chr3 15375021 15375155 -202662003 + MIR3 SINE MIR 30 183 -25 184 148 0 0 chr3 15375330 15375357 -202661801 + MIR3 SINE MIR 155 181 -27 970 142 58 0 chr3 15375393 15375548 -202661610 + AluSg/x SINE Alu 135 298 -12 295 335 26 79 chr3 15376628 15376693 -202660465 + MIR SINE MIR 103 170 -92 1954 117 13 46 chr3 15376693 15377000 -202660158 + AluSx SINE Alu 1 297 -15 295 335 26 79 chr3 15377000 15377086 -202660072 + MIR SINE MIR 170 246 -16 24 85 0 0 chr3 15377366 15377425 -202659733 + AT_rich Low_complexity Low_complexity 1 59 0 2112 134 0 6 chr3 15377502 15377815 -202659343 + AluSx SINE Alu 1 311 -1 1566 207 4 0 chr3 15377816 15378072 -202659086 - AluJb SINE Alu -55 257 1 2513 57 0 3 chr3 15378708 15379007 -202658151 - AluY SINE Alu -13 298 1 808 155 0 16 chr3 15379009 15379138 -202658020 - AluJo/FLAM SINE Alu -180 132 6 2246 113 13 10 chr3 15379188 15379499 -202657659 + AluSx SINE Alu 1 312 0 998 176 11 17 chr3 15379509 15379685 -202657473 - AluJ SINE Alu -18 294 120 2366 105 0 0 chr3 15379795 15380099 -202657059 + AluSx SINE Alu 1 304 -8 1331 165 0 5 chr3 15380669 15380893 -202656265 - AluY SINE Alu -88 223 1 804 158 0 0 chr3 15380904 15381024 -202656134 - AluJ SINE Alu -187 125 6 2261 109 13 10 chr3 15381074 15381385 -202655773 + AluSx SINE Alu 1 312 0 994 167 29 17 chr3 15381395 15381569 -202655589 - AluJb SINE Alu -18 294 119 2275 122 0 0 chr3 15381676 15381987 -202655171 + AluSx SINE Alu 1 311 -1 1566 207 4 0 chr3 15381988 15382244 -202654914 - AluJb SINE Alu -55 257 1 2525 53 0 3 chr3 15382882 15383181 -202653977 - AluY SINE Alu -13 298 1 759 179 8 0 chr3 15383213 15383336 -202653822 + FLAM_C SINE Alu 3 126 -17 2044 148 0 3 chr3 15383433 15383731 -202653427 + AluSx SINE Alu 1 297 -15 22 35 0 0 chr3 15383853 15383882 -202653276 + AT_rich Low_complexity Low_complexity 1 29 0 1036 191 23 56 chr3 15383915 15383970 -202653188 + AluJo SINE Alu 84 139 -173 2112 131 3 13 chr3 15383970 15384284 -202652874 + AluSx SINE Alu 1 311 -1 1036 191 23 56 chr3 15384284 15384443 -202652715 + AluJo SINE Alu 139 291 -21 320 256 26 83 chr3 15384452 15384539 -202652619 - MIR SINE MIR -2 260 184 875 165 0 88 chr3 15384539 15384721 -202652437 + FRAM SINE Alu 1 166 0 320 256 26 83 chr3 15384721 15384789 -202652369 - MIR SINE MIR -78 184 114 645 145 40 24 chr3 15384899 15385023 -202652135 - AluY SINE Alu -4 307 182 1944 127 0 17 chr3 15385075 15385367 -202651791 - AluSx SINE Alu -25 287 1 1299 163 10 63 chr3 15385543 15385844 -202651314 + AluSq SINE Alu 1 285 -28 687 260 22 22 chr3 15386238 15386419 -202650739 - AluJo SINE Alu -130 182 2 504 243 138 0 chr3 15386447 15386599 -202650559 + MER96 DNA MER1_type 1 173 -2 412 282 0 10 chr3 15386604 15386707 -202650451 - L2 LINE L2 -32 3281 3180 2317 110 10 0 chr3 15387363 15387672 -202649486 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 15387791 15387821 -202649337 + AT_rich Low_complexity Low_complexity 1 30 0 1705 154 70 0 chr3 15387999 15388271 -202648887 - AluJo SINE Alu -21 291 1 302 309 75 0 chr3 15388362 15388456 -202648702 - L1MC/D LINE L1 -1986 5822 5722 2127 138 0 7 chr3 15388463 15388761 -202648397 - AluSx SINE Alu -16 296 1 775 237 6 17 chr3 15388785 15388962 -202648196 + MER5B DNA MER1_type 4 178 0 447 226 182 17 chr3 15389133 15389190 -202647968 + MIR SINE MIR 2 48 -214 2384 171 88 11 chr3 15389190 15389634 -202647524 - MER66A LTR ERV1 0 478 1 447 226 182 17 chr3 15389634 15389757 -202647401 + MIR SINE MIR 48 212 -50 428 303 22 80 chr3 15390574 15390848 -202646310 - MIR SINE MIR 0 262 5 1750 164 0 20 chr3 15391238 15391530 -202645628 + AluSx SINE Alu 1 286 -26 1700 153 0 28 chr3 15392448 15392730 -202644428 + AluSx SINE Alu 38 311 -1 316 233 185 38 chr3 15392802 15393094 -202644064 + Tigger8 DNA MER2_type 187 521 -145 198 118 0 0 chr3 15393362 15393396 -202643762 + (A)n Simple_repeat Simple_repeat 1 34 0 993 157 0 0 chr3 15393516 15393669 -202643489 - AluSg/x SINE Alu -31 281 129 680 260 94 69 chr3 15394169 15394603 -202642555 + HAL1 LINE L1 34 478 -2029 306 170 0 0 chr3 15394621 15394668 -202642490 + AluJ/FRAM SINE Alu 221 267 -35 2456 88 0 3 chr3 15394671 15394977 -202642181 - AluY SINE Alu -6 305 1 895 154 7 7 chr3 15394978 15395121 -202642037 - AluJo SINE Alu -169 143 1 294 323 58 53 chr3 15395551 15395740 -202641418 - MIR SINE MIR -52 210 21 217 289 175 57 chr3 15396053 15396247 -202640911 - L2 LINE L2 -163 3109 2893 261 286 114 28 chr3 15396303 15396558 -202640600 - L2 LINE L2 -457 2857 2581 219 36 0 0 chr3 15396827 15396855 -202640303 + (CCCCCT)n Simple_repeat Simple_repeat 4 31 0 680 220 23 8 chr3 15396865 15396997 -202640161 - AluJb SINE Alu -45 267 134 1553 255 106 38 chr3 15397369 15398134 -202639024 + HAL1 LINE L1 1595 2411 -96 2371 104 3 0 chr3 15398161 15398469 -202638689 + AluSg SINE Alu 1 309 -1 524 292 65 34 chr3 15398553 15398935 -202638223 + MLT1J LTR MaLR 73 504 -7 283 228 22 22 chr3 15400025 15400117 -202637041 - MIR3 SINE MIR -27 181 90 799 160 8 0 chr3 15400535 15400660 -202636498 + AluJo/FLAM SINE Alu 3 128 -184 1918 161 0 7 chr3 15400661 15400959 -202636199 + AluJb SINE Alu 5 300 -12 2137 125 6 3 chr3 15401059 15401370 -202635788 + AluSq SINE Alu 1 312 -1 1233 123 0 0 chr3 15401370 15401552 -202635606 + AluSg/x SINE Alu 120 301 0 2242 54 58 0 chr3 15401685 15401963 -202635195 + AluY SINE Alu 1 294 -17 1192 164 0 25 chr3 15401963 15401994 -202635164 + AluJo SINE Alu 106 136 -176 2324 82 0 0 chr3 15401994 15402303 -202634855 + AluY SINE Alu 1 309 0 1192 164 0 25 chr3 15402303 15402471 -202634687 + AluJo SINE Alu 136 301 -11 216 0 0 0 chr3 15402681 15402705 -202634453 + (A)n Simple_repeat Simple_repeat 1 24 0 2413 97 0 3 chr3 15402852 15403163 -202633995 - AluSx SINE Alu -2 310 1 2557 56 3 0 chr3 15403169 15403475 -202633683 - AluY SINE Alu -4 307 1 1044 78 8 0 chr3 15403475 15403604 -202633554 - AluSq/x SINE Alu -183 130 1 246 214 0 0 chr3 15404520 15404576 -202632582 + L1M3 LINE L1 5386 5441 -739 2264 113 0 7 chr3 15404576 15404876 -202632282 + AluSx SINE Alu 1 298 -14 2548 77 0 3 chr3 15405090 15405402 -202631756 + AluY SINE Alu 1 311 0 340 58 115 0 chr3 15405406 15405458 -202631700 - L1ME3 LINE L1 -12 6150 6093 262 232 229 3 chr3 15405596 15405771 -202631387 + MIR SINE MIR 16 237 -25 2239 120 0 0 chr3 15405840 15406140 -202631018 - AluSx SINE Alu -12 300 1 433 181 81 128 chr3 15406508 15406657 -202630501 - MER103 DNA DNA -1 165 24 274 219 78 0 chr3 15406754 15406818 -202630340 + L2 LINE L2 3153 3221 -51 223 316 10 41 chr3 15406882 15406980 -202630178 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 679 261 101 20 chr3 15407049 15407248 -202629910 - MER58C DNA MER1_type 0 215 1 2160 126 10 0 chr3 15408008 15408309 -202628849 + AluSx SINE Alu 1 304 -8 301 257 202 0 chr3 15408355 15408464 -202628694 + HAL1 LINE L1 1184 1314 -1193 489 255 105 79 chr3 15408470 15408851 -202628307 + HAL1 LINE L1 8 398 -2109 1751 235 141 51 chr3 15408854 15409785 -202627373 + HAL1 LINE L1 444 1290 -1217 2334 117 0 0 chr3 15409785 15410093 -202627065 + AluSg SINE Alu 1 308 -2 1751 235 141 51 chr3 15410093 15410149 -202627009 + HAL1 LINE L1 1290 1340 -1167 2280 114 3 7 chr3 15410149 15410456 -202626702 + AluSx SINE Alu 1 306 -6 1751 235 141 51 chr3 15410456 15410512 -202626646 + HAL1 LINE L1 1340 1582 -925 2399 97 0 0 chr3 15414852 15415150 -202622008 + AluSg SINE Alu 1 298 -12 354 279 215 23 chr3 15415497 15415716 -202621442 - MIR SINE MIR 0 262 2 223 226 161 0 chr3 15415870 15415932 -202621226 + L2 LINE L2 3242 3313 0 265 30 0 0 chr3 15415959 15415992 -202621166 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1942 134 11 3 chr3 15415992 15416275 -202620883 - AluSx SINE Alu -27 285 1 2109 104 42 0 chr3 15416464 15416751 -202620407 + AluSx SINE Alu 3 301 -11 261 240 83 0 chr3 15417212 15417308 -202619850 + L1ME LINE L1 5761 5864 -257 22 35 0 0 chr3 15417749 15417778 -202619380 + AT_rich Low_complexity Low_complexity 1 29 0 842 123 7 51 chr3 15418128 15418266 -202618892 - FLAM_C SINE Alu -1 132 1 1772 133 31 14 chr3 15418702 15418988 -202618170 - AluJb SINE Alu -21 291 1 1006 85 0 0 chr3 15418991 15419120 -202618038 - AluSq/x SINE Alu -170 142 14 1375 179 6 101 chr3 15419138 15419456 -202617702 + AluSx SINE Alu 2 289 -13 1024 167 25 0 chr3 15419472 15419634 -202617524 + FRAM SINE Alu 1 166 0 1889 125 0 59 chr3 15419711 15420032 -202617126 + AluSx SINE Alu 1 302 -10 1945 116 34 7 chr3 15420137 15420430 -202616728 + AluSx SINE Alu 1 301 -11 1770 159 28 0 chr3 15422031 15422314 -202614844 - AluJo SINE Alu -21 291 1 1291 253 54 42 chr3 15422327 15422825 -202614333 + MLT1H1 LTR MaLR 10 513 -42 529 217 17 0 chr3 15422882 15422997 -202614161 + L2 LINE L2 3193 3309 -4 416 259 40 46 chr3 15423007 15423181 -202613977 - MER5A DNA MER1_type -1 188 16 334 196 11 43 chr3 15423622 15423714 -202613444 + L1MC5 LINE L1 7837 7925 -36 234 257 117 53 chr3 15424141 15424312 -202612846 + L1MC5 LINE L1 7451 7632 -329 1793 144 38 3 chr3 15424520 15424811 -202612347 + AluSx SINE Alu 1 301 -11 189 241 86 0 chr3 15424853 15424911 -202612247 - MIR SINE MIR -11 251 189 279 203 51 0 chr3 15424947 15425006 -202612152 + HAL1 LINE L1 8 69 -2438 537 239 167 0 chr3 15425011 15425149 -202612009 + MER58A DNA MER1_type 41 201 -23 429 304 72 29 chr3 15425185 15425323 -202611835 - MIR SINE MIR -118 144 1 729 266 92 71 chr3 15425533 15425969 -202611189 + HAL1 LINE L1 34 478 -2029 287 200 20 0 chr3 15425984 15426034 -202611124 + AluJ/FRAM SINE Alu 217 267 -35 1984 148 0 0 chr3 15426037 15426340 -202610818 - AluSx SINE Alu -9 303 1 429 385 50 5 chr3 15426419 15426640 -202610518 + MIR SINE MIR 18 248 -14 362 318 59 6 chr3 15426940 15427110 -202610048 - L1M4 LINE L1 -1913 4233 4055 557 115 0 0 chr3 15427192 15427270 -202609888 - U6 snRNA snRNA -29 78 1 371 264 28 9 chr3 15427798 15427904 -202609254 - MIR SINE MIR -135 127 20 189 307 233 6 chr3 15427900 15428213 -202608945 + L2 LINE L2 1990 2373 -941 * 243 343 75 39 chr3 15428332 15428586 -202608572 + L2 LINE L2 2969 3231 -41 312 70 0 0 chr3 15428687 15428730 -202608428 + (TG)n Simple_repeat Simple_repeat 2 44 0 776 188 0 22 chr3 15428797 15428935 -202608223 + AluJo SINE Alu 2 136 -176 25 83 0 0 chr3 15429007 15429067 -202608091 + AT_rich Low_complexity Low_complexity 1 60 0 2136 113 0 23 chr3 15429067 15429377 -202607781 - AluSx SINE Alu -9 303 1 1873 147 10 0 chr3 15429377 15429669 -202607489 - AluJb SINE Alu -17 295 1 757 164 16 23 chr3 15429687 15429815 -202607343 - FLAM_C SINE Alu -14 129 3 23 0 0 0 chr3 15429918 15429941 -202607217 + AT_rich Low_complexity Low_complexity 1 23 0 1381 165 36 56 chr3 15429951 15430254 -202606904 + AluJo SINE Alu 1 297 -15 2177 122 0 0 chr3 15430254 15430565 -202606593 + AluSx SINE Alu 1 312 0 1155 229 4 8 chr3 15430664 15430908 -202606250 + MIR SINE MIR 20 262 0 540 266 24 16 chr3 15431396 15431414 -202605744 + MIR SINE MIR 17 33 -215 2514 30 0 13 chr3 15431414 15431718 -202605440 + AluY SINE Alu 1 300 -11 540 266 24 16 chr3 15431718 15431870 -202605288 + MIR SINE MIR 33 187 -61 208 243 122 27 chr3 15431911 15431985 -202605173 - MIR SINE MIR -64 144 64 418 70 18 0 chr3 15432067 15432124 -202605034 + MER30B DNA MER1_type 1 58 -132 258 189 21 32 chr3 15432252 15432347 -202604811 + (CACAA)n Simple_repeat Simple_repeat 1 94 0 423 127 63 35 chr3 15432355 15432870 -202604288 + (CA)n Simple_repeat Simple_repeat 1 529 0 300 365 79 20 chr3 15433299 15433502 -202603656 + MIR SINE MIR 27 241 -21 2029 136 0 13 chr3 15433715 15434031 -202603127 - AluSx SINE Alu 0 312 1 3827 169 31 12 chr3 15434057 15434775 -202602383 - L1MB3 LINE L1 0 6183 5453 365 245 37 43 chr3 15435533 15435667 -202601491 + L1MC4 LINE L1 2001 6983 -1339 270 226 0 0 chr3 15435925 15435978 -202601180 - MIR3 SINE MIR -40 168 116 264 345 12 0 chr3 15436578 15436662 -202600496 - L2 LINE L2 0 3272 3188 325 331 55 0 chr3 15436695 15436840 -202600318 - L2 LINE L2 -220 3052 2900 274 233 87 10 chr3 15437016 15437119 -202600039 + L1ME LINE L1 5756 5866 -296 562 128 0 0 chr3 15437142 15437220 -202599938 + AluS SINE Alu 1 78 -234 441 150 12 12 chr3 15437224 15437304 -202599854 + MER116 DNA Mariner 1 80 0 2008 234 51 18 chr3 15437327 15437874 -202599284 + L1MD2 LINE L1 5786 6350 -9 293 225 28 0 chr3 15438997 15439068 -202598090 + MIR3 SINE MIR 86 158 -50 747 233 11 28 chr3 15439072 15439252 -202597906 + MER5B DNA MER1_type 1 177 -1 298 149 0 0 chr3 15439833 15439880 -202597278 + MIR SINE MIR 86 132 -76 383 313 45 0 chr3 15440865 15440999 -202596159 + MIR3 SINE MIR 62 201 -7 453 300 87 43 chr3 15441063 15441293 -202595865 + MIR SINE MIR 16 255 -7 220 281 16 16 chr3 15441351 15441415 -202595743 + L2 LINE L2 3209 3272 0 279 0 0 0 chr3 15441465 15441496 -202595662 + (TC)n Simple_repeat Simple_repeat 1 31 0 711 238 119 18 chr3 15441900 15442127 -202595031 + MER112 DNA MER1_type 11 260 0 268 286 143 0 chr3 15442149 15442247 -202594911 - MIR SINE MIR -62 146 35 339 25 0 0 chr3 15442272 15442312 -202594846 + (CA)n Simple_repeat Simple_repeat 1 40 0 352 263 70 7 chr3 15442458 15442611 -202594547 + MIR3 SINE MIR 24 192 -16 201 289 333 0 chr3 15442779 15442869 -202594289 + MIR3 SINE MIR 37 156 -52 21 0 0 0 chr3 15443727 15443748 -202593410 + AT_rich Low_complexity Low_complexity 1 21 0 198 358 60 7 chr3 15443941 15444092 -202593066 - L2 LINE L2 -215 3057 2899 256 269 45 0 chr3 15444192 15444259 -202592899 - MIR SINE MIR -79 183 114 222 248 101 28 chr3 15444633 15444742 -202592416 + L2 LINE L2 3133 3249 -23 333 386 29 6 chr3 15445018 15445189 -202591969 + L3 LINE CR1 1387 1561 -16 270 296 98 15 chr3 15445542 15445674 -202591484 - L3 LINE CR1 -99 1478 1336 1838 194 87 27 chr3 15446076 15446514 -202590644 - MLT1C LTR MaLR 0 467 4 403 277 115 0 chr3 15447258 15447388 -202589770 + MER117 DNA MER1_type 39 183 -14 207 261 31 0 chr3 15447794 15447859 -202589299 + MIR SINE MIR 62 128 -80 1963 153 0 6 chr3 15448619 15448933 -202588225 - AluJo SINE Alu 0 312 1 429 161 74 0 chr3 15448956 15449037 -202588121 + MIR SINE MIR 57 143 -65 188 274 295 0 chr3 15449211 15449306 -202587852 - L2 LINE L2 0 3272 3150 323 325 20 5 chr3 15450066 15450263 -202586895 - L2 LINE L2 -1222 2092 1893 289 185 66 0 chr3 15452911 15452993 -202584165 - MIR SINE MIR -77 131 36 345 195 18 0 chr3 15453327 15453410 -202583748 - MIR SINE MIR -62 146 100 245 338 55 7 chr3 15454496 15454641 -202582517 + L1ME4a LINE L1 5961 6112 -9 445 248 6 64 chr3 15455428 15455585 -202581573 - MIR3 SINE MIR -45 163 16 440 218 12 11 chr3 15455834 15455969 -202581189 - MIR SINE MIR -59 149 37 252 266 0 0 chr3 15456028 15456107 -202581051 - MIR SINE MIR -62 146 68 2101 100 7 0 chr3 15456494 15456799 -202580359 + AluSx SINE Alu 1 307 0 841 271 74 13 chr3 15458015 15458314 -202578844 + MER113 DNA MER1_type? 8 324 -197 183 189 0 0 chr3 15458475 15458512 -202578646 + MIR3 SINE MIR 150 186 -22 345 280 61 30 chr3 15459347 15459479 -202577679 - MIR SINE MIR -117 145 10 478 31 0 0 chr3 15459513 15459578 -202577580 + AluSp/q SINE Alu 243 307 -6 390 258 89 8 chr3 15461297 15461421 -202575737 - MIR SINE MIR -81 181 48 181 219 0 0 chr3 15466763 15466795 -202570363 - MIR SINE MIR -114 148 117 284 274 28 19 chr3 15467752 15467858 -202569300 - MIR3 SINE MIR -91 117 11 192 227 30 45 chr3 15467856 15467922 -202569236 - MIR3 SINE MIR -37 171 107 * 267 146 0 0 chr3 15469948 15470003 -202567155 + (TA)n Simple_repeat Simple_repeat 1 55 0 186 43 0 0 chr3 15471821 15471844 -202565314 + (CA)n Simple_repeat Simple_repeat 1 23 0 249 342 68 27 chr3 15472594 15472857 -202564301 - L1M4 LINE L1 -1232 4914 4641 191 135 19 39 chr3 15474152 15474204 -202562954 - MIR SINE MIR -77 131 81 427 303 74 6 chr3 15474730 15474905 -202562253 - MIR SINE MIR -71 191 5 284 261 81 36 chr3 15475053 15475164 -202561994 - MIR3 SINE MIR -47 161 46 2321 114 0 0 chr3 15475194 15475502 -202561656 + AluSx SINE Alu 1 308 -4 527 0 16 0 chr3 15476346 15476409 -202560749 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2193 82 24 10 chr3 15476409 15476700 -202560458 - AluSx SINE Alu -17 295 1 408 213 82 41 chr3 15477394 15477516 -202559642 - MIR SINE MIR -86 176 50 671 137 30 18 chr3 15478074 15478242 -202558916 + CT-rich Low_complexity Low_complexity 5 174 0 326 195 13 0 chr3 15478258 15478335 -202558823 + CT-rich Low_complexity Low_complexity 1 78 0 301 241 19 37 chr3 15478551 15478659 -202558499 + MIR SINE MIR 32 137 -71 353 270 51 51 chr3 15479070 15479207 -202557951 - L2 LINE L2 0 3272 3136 439 286 187 50 chr3 15479564 15479906 -202557252 + L2 LINE L2 2884 3272 0 207 261 43 65 chr3 15480917 15481009 -202556149 + MIR SINE MIR 103 192 -70 455 276 31 31 chr3 15481016 15481069 -202556089 - MIR SINE MIR 0 262 210 2385 78 3 0 chr3 15481069 15481362 -202555796 - AluSp SINE Alu -4 309 16 455 276 31 31 chr3 15481362 15481471 -202555687 - MIR SINE MIR -51 211 100 220 316 25 0 chr3 15481471 15481550 -202555608 - MIR SINE MIR -70 138 58 180 0 0 0 chr3 15482605 15482625 -202554533 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 297 274 82 75 chr3 15482960 15483106 -202554052 + MIR SINE MIR 17 163 -99 1720 184 97 35 chr3 15483482 15483817 -202553341 + Charlie4a DNA MER1_type 21 393 -1568 859 178 6 6 chr3 15483817 15483974 -202553184 + FRAM SINE Alu 1 157 -9 1720 184 97 35 chr3 15483974 15484094 -202553064 + Charlie4a DNA MER1_type 393 504 -4 214 280 199 15 chr3 15484619 15484756 -202552402 - MIR SINE MIR -89 173 3 222 259 86 0 chr3 15485133 15485214 -202551944 + MIR SINE MIR 58 145 -63 3191 183 41 17 chr3 15486462 15487100 -202550058 - MER6 DNA MER2_type -183 682 30 2704 154 50 21 chr3 15487108 15487576 -202549582 - L1MB7 LINE L1 -259 5925 5439 2319 115 0 10 chr3 15487576 15487888 -202549270 - AluSx SINE Alu -3 309 1 2704 154 50 21 chr3 15487888 15487944 -202549214 - L1MB7 LINE L1 -745 5439 5386 623 336 51 49 chr3 15488648 15488860 -202548298 + HAL1b LINE L1 66 276 -1072 2350 96 7 0 chr3 15488860 15489161 -202547997 + AluSx SINE Alu 1 303 -9 794 122 30 15 chr3 15489165 15489296 -202547862 + FLAM_C SINE Alu 1 133 0 623 336 51 49 chr3 15489296 15489506 -202547652 + HAL1b LINE L1 278 494 -854 1223 206 104 63 chr3 15489507 15490028 -202547130 + L1ME1 LINE L1 5638 6333 -1 269 299 80 0 chr3 15490025 15490162 -202546996 + HAL1b LINE L1 517 664 -684 * 2098 120 0 20 chr3 15490224 15490336 -202546822 + AluSx SINE Alu 1 114 -198 1827 150 59 31 chr3 15490336 15490690 -202546468 + THE1B LTR MaLR 1 364 0 2098 120 0 20 chr3 15490690 15490878 -202546280 + AluSx SINE Alu 114 295 -17 861 139 19 51 chr3 15490879 15491037 -202546121 + FRAM SINE Alu 8 160 -16 934 238 106 37 chr3 15491058 15491137 -202546021 + L1MC5 LINE L1 6996 7068 -893 2060 130 51 23 chr3 15491137 15491491 -202545667 - THE1B LTR MaLR 0 364 1 934 238 106 37 chr3 15491491 15491815 -202545343 + L1MC5 LINE L1 7068 7427 -534 254 202 18 83 chr3 15491973 15492082 -202545076 + L1ME3A LINE L1 5960 6061 -109 311 267 67 8 chr3 15494224 15494344 -202542814 - MIR SINE MIR -87 175 49 510 233 60 0 chr3 15494543 15494676 -202542482 + L1MB2 LINE L1 6028 6168 -3 1657 186 40 32 chr3 15494981 15495384 -202541774 - L1MB2 LINE L1 -99 6072 5667 222 292 0 13 chr3 15495432 15495505 -202541653 - MIR SINE MIR -112 96 47 1996 82 56 43 chr3 15495831 15496136 -202541022 - AluSx SINE Alu -3 309 1 590 176 146 24 chr3 15496266 15496431 -202540727 - MER5A DNA MER1_type 0 189 5 1805 146 21 7 chr3 15499080 15499360 -202537798 + AluSx SINE Alu 11 294 -18 582 151 126 17 chr3 15499367 15499486 -202537672 + FLAM_C SINE Alu 1 132 -1 7413 22 5 0 chr3 15499488 15500705 -202536453 + L1PA3 LINE L1 4963 6178 0 657 263 160 38 chr3 15500723 15500944 -202536214 + L1MEc LINE L1 93 286 -6110 2431 94 0 0 chr3 15500944 15501251 -202535907 + AluSx SINE Alu 1 307 -5 657 263 160 38 chr3 15501251 15501447 -202535711 + L1MEc LINE L1 286 561 -5835 448 222 78 101 chr3 15501430 15501488 -202535670 + L1MEc LINE L1 1458 1516 -4880 * 2280 89 31 3 chr3 15501488 15501780 -202535378 + AluSg1 SINE Alu 1 300 -9 448 222 78 101 chr3 15501780 15502027 -202535131 + L1MEc LINE L1 1516 1756 -4640 914 150 0 21 chr3 15502030 15502170 -202534988 + AluJo SINE Alu 1 137 -175 2387 119 0 0 chr3 15502190 15502500 -202534658 + AluSx SINE Alu 1 310 -2 659 192 0 0 chr3 15502569 15502694 -202534464 + AluJb SINE Alu 179 303 -9 1006 297 82 5 chr3 15502694 15503111 -202534047 + L1MEc LINE L1 1759 2207 -4189 408 241 98 0 chr3 15503089 15503222 -202533936 + L1MD3 LINE L1 7833 7978 -86 * 268 277 62 54 chr3 15503325 15503455 -202533703 + MER5A DNA MER1_type 37 167 -22 526 153 59 0 chr3 15503949 15504034 -202533124 + MER33 DNA MER1_type 27 116 -208 1829 144 7 4 chr3 15504035 15504306 -202532852 + AluJb SINE Alu 18 289 -23 688 157 170 7 chr3 15504310 15504463 -202532695 + Tigger1 DNA MER2_type 2241 2418 0 428 289 67 26 chr3 15505799 15505993 -202531165 + MIR3 SINE MIR 5 206 -2 242 203 40 54 chr3 15508053 15508127 -202529031 + MIR SINE MIR 59 131 -77 356 240 96 41 chr3 15509103 15509269 -202527889 - MIR SINE MIR -61 147 14 219 200 150 0 chr3 15509870 15509950 -202527208 - MIR3 SINE MIR -7 201 110 243 0 0 0 chr3 15510154 15510181 -202526977 + (A)n Simple_repeat Simple_repeat 1 27 0 312 247 26 0 chr3 15510270 15510347 -202526811 + MIR SINE MIR 105 183 -79 186 200 0 0 chr3 15511638 15511673 -202525485 + MIR SINE MIR 114 148 -114 241 267 16 0 chr3 15511979 15512049 -202525109 - MIR SINE MIR -62 146 84 27 62 0 0 chr3 15512388 15512436 -202524722 + AT_rich Low_complexity Low_complexity 1 48 0 212 197 0 33 chr3 15512590 15512651 -202524507 + GA-rich Low_complexity Low_complexity 2 60 0 263 239 261 0 chr3 15513507 15513599 -202523559 + MER5A DNA MER1_type 39 154 -35 295 295 168 20 chr3 15514159 15514308 -202522850 + MIR SINE MIR 75 245 -17 320 278 176 62 chr3 15514312 15514488 -202522670 - MIR SINE MIR -1 261 66 730 119 40 17 chr3 15515197 15515373 -202521785 + CT-rich Low_complexity Low_complexity 1 180 0 296 188 14 0 chr3 15515395 15515464 -202521694 + CT-rich Low_complexity Low_complexity 1 70 0 301 241 19 37 chr3 15515680 15515788 -202521370 + MIR SINE MIR 32 137 -71 353 270 51 51 chr3 15516199 15516336 -202520822 - L2 LINE L2 0 3272 3136 445 298 175 38 chr3 15516693 15517035 -202520123 + L2 LINE L2 2884 3272 0 207 261 43 65 chr3 15518046 15518138 -202519020 + MIR SINE MIR 103 192 -70 455 276 31 31 chr3 15518145 15518198 -202518960 - MIR SINE MIR 0 262 210 2385 78 3 0 chr3 15518198 15518491 -202518667 - AluSp SINE Alu -4 309 16 455 276 31 31 chr3 15518491 15518600 -202518558 - MIR SINE MIR -51 211 100 220 316 25 0 chr3 15518600 15518679 -202518479 - MIR SINE MIR -70 138 58 180 0 0 0 chr3 15519734 15519754 -202517404 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 305 219 110 103 chr3 15520089 15520235 -202516923 + MIR SINE MIR 17 163 -99 1732 184 97 35 chr3 15520611 15520946 -202516212 + Charlie4a DNA MER1_type 21 393 -1568 859 178 6 6 chr3 15520946 15521103 -202516055 + FRAM SINE Alu 1 157 -9 1732 184 97 35 chr3 15521103 15521223 -202515935 + Charlie4a DNA MER1_type 393 504 -4 214 280 199 15 chr3 15521748 15521885 -202515273 - MIR SINE MIR -89 173 3 222 259 86 0 chr3 15522262 15522343 -202514815 + MIR SINE MIR 58 145 -63 3142 185 41 19 chr3 15523591 15524230 -202512928 - MER6 DNA MER2_type -183 682 30 2614 150 56 0 chr3 15524238 15524705 -202512453 - L1MB7 LINE L1 -259 5925 5433 2394 93 0 10 chr3 15524706 15525017 -202512141 - AluY SINE Alu -3 308 1 362 241 12 18 chr3 15525179 15525290 -202511868 + MLT1I LTR MaLR 318 409 0 1242 140 0 0 chr3 15525583 15525761 -202511397 + AluSg/x SINE Alu 133 310 0 488 224 35 9 chr3 15525890 15526006 -202511152 + MIR SINE MIR 38 156 -106 184 289 0 0 chr3 15526051 15526096 -202511062 - MIR SINE MIR -141 67 23 540 301 112 45 chr3 15526711 15527067 -202510091 + L2 LINE L2 2922 3301 -12 1033 118 7 0 chr3 15527069 15527204 -202509954 + AluSq/x SINE Alu 1 136 -177 1925 149 0 30 chr3 15527204 15527499 -202509659 + AluSx SINE Alu 1 286 -26 1618 136 0 0 chr3 15527604 15527832 -202509326 - AluSg/x SINE Alu 0 312 85 928 115 0 0 chr3 15527865 15527995 -202509163 - FLAM_C SINE Alu -2 131 2 456 128 0 53 chr3 15528024 15528118 -202509040 + FLAM_C SINE Alu 55 143 0 368 324 83 0 chr3 15528166 15528311 -202508847 - MIR3 SINE MIR 0 208 52 22 0 0 0 chr3 15528585 15528607 -202508551 + AT_rich Low_complexity Low_complexity 1 22 0 1570 203 7 7 chr3 15528612 15528913 -202508245 + AluJo SINE Alu 6 306 -6 211 313 104 0 chr3 15529012 15529079 -202508079 - L2 LINE L2 -50 3222 3149 292 169 104 0 chr3 15529357 15529434 -202507724 + L1M LINE L1 5264 5348 -996 2386 103 0 0 chr3 15529449 15529751 -202507407 + AluSx SINE Alu 1 302 -10 2236 117 0 7 chr3 15529949 15530248 -202506910 + AluSx SINE Alu 1 297 -15 1971 155 3 19 chr3 15530431 15530748 -202506410 + AluJo SINE Alu 1 312 0 238 215 178 37 chr3 15530815 15530876 -202506282 + MLT1H LTR MaLR 420 471 -78 2025 114 35 14 chr3 15530876 15531166 -202505992 + AluSx SINE Alu 1 296 -16 238 215 178 37 chr3 15531166 15531211 -202505947 + MLT1H LTR MaLR 471 541 -8 2720 30 0 0 chr3 15531235 15531531 -202505627 + AluYa5 SINE Alu 1 296 -15 2364 67 0 0 chr3 15531582 15531894 -202505264 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 15532142 15532300 -202504858 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 15532681 15532794 -202504364 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 15533019 15533106 -202504052 + MIR SINE MIR 84 185 -77 308 285 28 56 chr3 15533401 15533545 -202503613 - MIR3 SINE MIR -61 147 8 2491 89 0 0 chr3 15533549 15533852 -202503306 - AluSx SINE Alu -9 303 1 373 235 68 53 chr3 15533854 15533986 -202503172 - MIR SINE MIR -62 146 12 340 288 144 44 chr3 15534227 15534281 -202502877 + L1ME4a LINE L1 5675 5722 -399 1865 158 10 13 chr3 15534281 15534579 -202502579 + AluJo SINE Alu 1 297 -15 340 288 144 44 chr3 15534579 15534753 -202502405 + L1ME4a LINE L1 5722 5926 -195 673 217 25 31 chr3 15534777 15534938 -202502220 - MIR SINE MIR -17 245 86 255 221 0 65 chr3 15535136 15535213 -202501945 - MIR SINE MIR -139 123 52 358 238 24 0 chr3 15535592 15535676 -202501482 + MIR SINE MIR 98 183 -79 2353 105 0 0 chr3 15536006 15536312 -202500846 + AluY SINE Alu 1 306 -5 1883 162 13 3 chr3 15536345 15536648 -202500510 - AluJo SINE Alu 0 312 7 2004 139 14 17 chr3 15536666 15536961 -202500197 - AluJb SINE Alu -18 294 1 2316 76 31 3 chr3 15537296 15537586 -202499572 - AluSc SINE Alu -11 298 1 222 349 112 18 chr3 15537795 15537964 -202499194 - MIR SINE MIR -27 235 51 2002 106 0 22 chr3 15538174 15538449 -202498709 + AluSx SINE Alu 44 312 0 364 226 69 0 chr3 15538676 15538778 -202498380 - L1MC5 LINE L1 -35 7926 7818 254 295 32 0 chr3 15539449 15539544 -202497614 - MER113 DNA MER1_type? -415 106 9 402 206 14 78 chr3 15539664 15539805 -202497353 - LTR16B LTR ERVL -4 460 329 231 323 31 23 chr3 15539930 15540060 -202497098 - LTR16B LTR ERVL -331 133 3 2348 105 0 0 chr3 15540218 15540514 -202496644 - AluSx SINE Alu -10 302 7 1594 101 18 0 chr3 15540527 15540745 -202496413 - AluSg/x SINE Alu -18 294 73 210 37 0 0 chr3 15540745 15540772 -202496386 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 672 238 21 0 chr3 15540772 15540915 -202496243 - FRAM SINE Alu -19 147 2 2333 112 3 0 chr3 15541375 15541679 -202495479 + AluSx SINE Alu 1 305 -7 512 225 7 80 chr3 15541849 15541976 -202495182 + MIR SINE MIR 89 205 -57 1531 158 25 60 chr3 15541976 15542146 -202495012 - AluJo SINE Alu -22 290 132 2438 99 0 0 chr3 15542146 15542448 -202494710 + AluY SINE Alu 1 302 -9 1531 158 25 60 chr3 15542448 15542561 -202494597 - AluJo SINE Alu -180 132 17 512 225 7 80 chr3 15542561 15542584 -202494574 + MIR SINE MIR 205 228 -34 297 328 81 15 chr3 15542942 15543140 -202494018 + MIR SINE MIR 40 250 -12 2361 98 0 9 chr3 15543574 15543889 -202493269 - AluSx SINE Alu 0 312 1 182 33 67 0 chr3 15543890 15543920 -202493238 + T-rich Low_complexity Low_complexity 2 33 0 863 167 0 0 chr3 15543923 15544055 -202493103 + AluJb SINE Alu 157 288 -24 652 226 27 21 chr3 15544057 15544243 -202492915 + ORSL DNA AcHobo 89 275 0 833 250 48 0 chr3 15544275 15544483 -202492675 + AluJo SINE Alu 3 220 -92 235 175 0 0 chr3 15544483 15544523 -202492635 + Alu SINE Alu 86 125 -177 2134 117 13 13 chr3 15544524 15544831 -202492327 - AluSx SINE Alu -5 307 1 842 165 23 0 chr3 15544831 15544964 -202492194 - AluJo SINE Alu -176 136 1 499 230 138 0 chr3 15544990 15545142 -202492016 + MER96 DNA MER1_type 1 173 -2 388 282 0 10 chr3 15545147 15545250 -202491908 - L2 LINE L2 -32 3281 3180 1887 161 26 19 chr3 15545906 15546025 -202491133 + AluJo SINE Alu 1 118 -194 2446 81 3 19 chr3 15546025 15546335 -202490823 - AluSg SINE Alu -5 305 1 1887 161 26 19 chr3 15546335 15546525 -202490633 + AluJo SINE Alu 118 312 0 1875 141 39 0 chr3 15546665 15546948 -202490210 + AluJo SINE Alu 1 294 -18 368 111 16 0 chr3 15546980 15547043 -202490115 + (TA)n Simple_repeat Simple_repeat 1 64 0 709 215 101 0 chr3 15547044 15547202 -202489956 - MIR SINE MIR -3 259 86 253 294 125 22 chr3 15547291 15547427 -202489731 - MIR SINE MIR -52 210 61 410 322 22 77 chr3 15547454 15547727 -202489431 + MIR SINE MIR 5 262 0 403 232 182 17 chr3 15548546 15548669 -202488489 - MIR SINE MIR -50 212 111 2225 180 81 5 chr3 15548669 15549113 -202488045 + MER66A LTR ERV1 1 478 0 403 232 182 17 chr3 15549113 15549170 -202487988 - MIR SINE MIR -151 111 2 722 237 6 17 chr3 15549341 15549518 -202487640 - MER5B DNA MER1_type 0 178 4 2258 125 0 6 chr3 15549542 15549853 -202487305 + AluSx SINE Alu 1 309 -3 1439 112 0 0 chr3 15549935 15550123 -202487035 + AluSg/x SINE Alu 109 296 -16 1939 160 76 78 chr3 15550134 15550633 -202486525 - MER11A LTR ERVK -738 528 31 827 198 4 70 chr3 15550762 15551020 -202486138 - AluSx SINE Alu -31 281 41 895 168 38 32 chr3 15551180 15551365 -202485793 + MER5A DNA MER1_type 4 189 0 2503 75 3 3 chr3 15551368 15551675 -202485483 + AluSp SINE Alu 1 307 -6 2243 112 3 6 chr3 15551685 15551997 -202485161 + AluSx SINE Alu 1 311 -1 961 122 0 98 chr3 15551997 15552185 -202484973 + AluSg/x SINE Alu 132 303 0 1008 175 0 63 chr3 15552867 15553073 -202484085 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 15553073 15553240 -202483918 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 15553671 15553828 -202483330 - MER103 DNA DNA -3 163 1 2034 120 7 48 chr3 15554431 15554603 -202482555 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 15554603 15554634 -202482524 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2380 74 3 0 chr3 15554634 15554918 -202482240 - AluSp SINE Alu -28 285 1 2034 120 7 48 chr3 15554918 15555053 -202482105 - AluSx SINE Alu -192 120 1 540 301 112 45 chr3 15555055 15555411 -202481747 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 15556026 15556071 -202481087 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 15556116 15556232 -202480926 - MIR SINE MIR -106 156 38 1242 140 0 0 chr3 15556361 15556539 -202480619 - AluSg/x SINE Alu 0 310 133 362 241 12 18 chr3 15556832 15556943 -202480215 - MLT1I LTR MaLR 0 409 318 2518 51 0 3 chr3 15557105 15557400 -202479758 + AluY SINE Alu 1 294 -17 535 243 43 37 chr3 15557539 15557825 -202479333 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 15557971 15557992 -202479166 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 400 48 32 0 chr3 15558116 15558179 -202478979 + (TG)n Simple_repeat Simple_repeat 1 65 0 1901 98 0 0 chr3 15558768 15559004 -202478154 + AluSx SINE Alu 40 275 -37 1895 147 0 60 chr3 15559414 15559733 -202477425 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 15560182 15560340 -202476818 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 15561367 15561655 -202475503 + AluJo SINE Alu 1 296 -16 189 250 0 39 chr3 15561684 15561736 -202475422 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 15562203 15562507 -202474651 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 15563188 15563507 -202473651 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 15563663 15563959 -202473199 + AluY SINE Alu 1 296 -15 2396 64 0 0 chr3 15564010 15564322 -202472836 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 15564570 15564728 -202472430 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 15565109 15565222 -202471936 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 15565447 15565534 -202471624 + MIR SINE MIR 84 185 -77 308 290 28 55 chr3 15565829 15565974 -202471184 - MIR3 SINE MIR -60 148 8 2491 89 0 0 chr3 15565978 15566281 -202470877 - AluSx SINE Alu -9 303 1 373 235 68 53 chr3 15566283 15566415 -202470743 - MIR SINE MIR -62 146 12 340 288 144 44 chr3 15566656 15566710 -202470448 + L1ME4a LINE L1 5675 5722 -399 1865 158 10 13 chr3 15566710 15567008 -202470150 + AluJo SINE Alu 1 297 -15 340 288 144 44 chr3 15567008 15567182 -202469976 + L1ME4a LINE L1 5722 5926 -195 1759 131 15 19 chr3 15567230 15567498 -202469660 - AluJb SINE Alu -45 267 1 248 219 0 2 chr3 15567557 15567606 -202469552 + MIR SINE MIR 43 90 -118 2030 140 7 3 chr3 15567844 15568136 -202469022 + AluSx SINE Alu 1 293 -19 435 215 19 166 chr3 15568184 15568352 -202468806 + L2 LINE L2 3087 3204 -109 1741 172 0 39 chr3 15568352 15568660 -202468498 - AluJb SINE Alu -16 296 1 435 215 19 166 chr3 15568660 15568756 -202468402 + L2 LINE L2 3204 3312 -1 375 291 64 7 chr3 15568765 15568906 -202468252 + Charlie8 DNA MER1_type 117 265 -2152 1781 132 68 32 chr3 15569197 15569478 -202467680 + AluSx SINE Alu 1 291 -21 983 120 0 120 chr3 15569515 15569533 -202467625 + AluSg/x SINE Alu 119 138 -165 2217 114 10 0 chr3 15569533 15569841 -202467317 + AluSx SINE Alu 1 311 -1 983 120 0 120 chr3 15569841 15570029 -202467129 + AluSg/x SINE Alu 138 303 0 1008 175 0 63 chr3 15570711 15570917 -202466241 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 15570917 15571084 -202466074 - MER46A DNA MER2_type -61 175 1 2293 82 0 7 chr3 15571425 15571717 -202465441 - AluY SINE Alu -21 290 1 813 155 0 16 chr3 15571719 15571848 -202465310 - AluJo SINE Alu -180 132 6 2261 109 13 10 chr3 15571898 15572209 -202464949 + AluSx SINE Alu 1 312 0 999 167 29 17 chr3 15572219 15572393 -202464765 - AluJb SINE Alu -18 294 119 2356 115 0 0 chr3 15572500 15572804 -202464354 + AluSx SINE Alu 1 304 -8 2454 57 0 20 chr3 15573996 15574297 -202462861 + AluY SINE Alu 1 295 -16 1961 110 57 11 chr3 15574489 15574770 -202462388 + AluSx SINE Alu 1 294 -18 2199 121 0 10 chr3 15575007 15575305 -202461853 + AluSq SINE Alu 1 295 -18 636 198 9 0 chr3 15575370 15575486 -202461672 + FLAM_A SINE Alu 1 117 -16 2292 102 6 13 chr3 15575508 15575821 -202461337 - AluSx SINE Alu -1 311 1 822 146 14 0 chr3 15575821 15575965 -202461193 - L1M4 LINE L1 -686 5492 5347 420 209 176 0 chr3 15576051 15576199 -202460959 + L2 LINE L2 2827 3000 -313 1616 217 113 43 chr3 15576203 15576241 -202460917 - MLT1D LTR MaLR -2 503 469 4068 150 75 92 chr3 15576241 15577330 -202459828 - MER11C LTR ERVK 0 1071 1 1616 217 113 43 chr3 15577330 15577761 -202459397 - MLT1D LTR MaLR -36 469 1 442 225 0 42 chr3 15577906 15578026 -202459132 + L2 LINE L2 3180 3294 -19 320 276 131 14 chr3 15578566 15578711 -202458447 + MIR SINE MIR 46 207 -55 542 189 0 0 chr3 15578926 15579016 -202458142 + AluJ/FLAM SINE Alu 2 91 -221 496 75 0 0 chr3 15579013 15579080 -202458078 - Alu SINE Alu -241 68 2 * 799 263 31 24 chr3 15579130 15579385 -202457773 - MIR SINE MIR -4 258 2 306 216 142 68 chr3 15579398 15579560 -202457598 + L1ME4a LINE L1 5946 6119 -2 2066 142 0 10 chr3 15579642 15579952 -202457206 + AluSx SINE Alu 1 307 -5 230 265 41 61 chr3 15579999 15580097 -202457061 - MIR3 SINE MIR -3 205 110 2142 109 7 3 chr3 15580618 15580926 -202456232 - AluSx SINE Alu 0 309 1 999 167 29 17 chr3 15581033 15581207 -202455951 + AluJb SINE Alu 119 294 -18 2261 109 13 10 chr3 15581217 15581528 -202455630 - AluSx SINE Alu 0 312 1 813 155 0 16 chr3 15581578 15581707 -202455451 + AluJo/FLAM SINE Alu 6 132 -180 2502 74 0 6 chr3 15581709 15582020 -202455138 + AluY SINE Alu 1 309 -2 216 0 0 0 chr3 15582167 15582191 -202454967 + (T)n Simple_repeat Simple_repeat 1 24 0 1684 146 9 110 chr3 15582401 15582569 -202454589 - AluJo SINE Alu -11 301 118 222 37 0 0 chr3 15582569 15582596 -202454562 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2338 82 0 0 chr3 15582596 15582878 -202454280 - AluY SINE Alu -29 282 1 1684 146 9 110 chr3 15582878 15582909 -202454249 - AluJo SINE Alu -193 119 86 2517 61 3 0 chr3 15582909 15583202 -202453956 - AluY SINE Alu -17 294 1 1684 146 9 110 chr3 15583202 15583335 -202453823 - AluJo SINE Alu -226 86 1 499 230 138 0 chr3 15583361 15583513 -202453645 + MER96 DNA MER1_type 1 173 -2 388 282 0 10 chr3 15583518 15583621 -202453537 - L2 LINE L2 -32 3281 3180 2375 104 10 0 chr3 15584277 15584586 -202452572 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 15584705 15584735 -202452423 + AT_rich Low_complexity Low_complexity 1 30 0 1711 154 70 0 chr3 15584913 15585185 -202451973 - AluJo SINE Alu -21 291 1 237 296 99 59 chr3 15585233 15585366 -202451792 - L1MC/D LINE L1 -1926 5882 5756 2152 138 0 13 chr3 15585366 15585540 -202451618 - AluSx SINE Alu -5 307 137 2187 132 0 0 chr3 15585540 15585835 -202451323 - AluSx SINE Alu -17 295 1 2152 138 0 13 chr3 15585835 15585971 -202451187 - AluSx SINE Alu -175 137 1 237 296 99 59 chr3 15585971 15586141 -202451017 - L1MC/D LINE L1 -2052 5756 5567 315 289 240 10 chr3 15586348 15586656 -202450502 - L2 LINE L2 -9 3304 2926 2013 146 69 50 chr3 15587370 15587429 -202449729 + MER65A LTR ERV1 1 57 -388 2024 106 46 7 chr3 15587429 15587712 -202449446 + AluSx SINE Alu 1 294 -18 2013 146 69 50 chr3 15587712 15588056 -202449102 + MER65A LTR ERV1 57 412 -33 2442 99 0 3 chr3 15588057 15588370 -202448788 - AluSx SINE Alu 0 312 1 2575 56 3 0 chr3 15588376 15588682 -202448476 - AluY SINE Alu -4 307 1 1081 70 8 0 chr3 15588682 15588811 -202448347 - AluSq/x SINE Alu -182 130 1 25 0 0 0 chr3 15588812 15588837 -202448321 + AT_rich Low_complexity Low_complexity 1 25 0 2059 150 0 3 chr3 15588873 15589173 -202447985 - AluSx SINE Alu -13 299 1 2211 70 3 14 chr3 15589537 15589848 -202447310 + AluY SINE Alu 1 308 0 1179 287 76 12 chr3 15590018 15590450 -202446708 - MLT1J LTR MaLR -50 461 2 2527 36 19 26 chr3 15590825 15591132 -202446026 - AluY SINE Alu -6 305 1 895 168 38 32 chr3 15591189 15591374 -202445784 + MER5A DNA MER1_type 4 189 0 2553 68 3 3 chr3 15591377 15591685 -202445473 + AluSp SINE Alu 1 308 -5 2243 112 3 6 chr3 15591695 15592007 -202445151 + AluSx SINE Alu 1 311 -1 961 122 0 98 chr3 15592007 15592195 -202444963 + AluSg/x SINE Alu 132 303 0 1018 171 0 63 chr3 15592881 15593086 -202444072 - AluJo SINE Alu -1 311 120 843 168 60 12 chr3 15593086 15593253 -202443905 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 15593684 15593841 -202443317 - MER103 DNA DNA -3 163 1 2046 117 7 48 chr3 15594444 15594616 -202442542 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 15594616 15594647 -202442511 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2380 74 3 0 chr3 15594647 15594931 -202442227 - AluSp SINE Alu -28 285 1 2046 117 7 48 chr3 15594931 15595066 -202442092 - AluSx SINE Alu -192 120 1 514 303 112 45 chr3 15595068 15595424 -202441734 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 15596039 15596084 -202441074 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 15596129 15596245 -202440913 - MIR SINE MIR -106 156 38 1216 134 0 11 chr3 15596372 15596551 -202440607 - AluSg/x SINE Alu -1 311 135 362 241 12 18 chr3 15596844 15596955 -202440203 - MLT1I LTR MaLR 0 409 318 2537 50 0 3 chr3 15597117 15597414 -202439744 + AluY SINE Alu 1 296 -15 535 243 43 37 chr3 15597553 15597839 -202439319 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 15597985 15598006 -202439152 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 382 49 33 0 chr3 15598130 15598191 -202438967 + (TG)n Simple_repeat Simple_repeat 1 63 0 1901 98 0 0 chr3 15598780 15599016 -202438142 + AluSx SINE Alu 40 275 -37 1895 147 0 60 chr3 15599426 15599745 -202437413 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 15600194 15600352 -202436806 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 15601379 15601667 -202435491 + AluJo SINE Alu 1 296 -16 200 231 0 39 chr3 15601696 15601748 -202435410 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 15602215 15602519 -202434639 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 15603200 15603519 -202433639 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 15603675 15603971 -202433187 + AluY SINE Alu 1 296 -15 2396 64 0 0 chr3 15604022 15604334 -202432824 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 15604582 15604740 -202432418 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 15605121 15605234 -202431924 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 15605459 15605546 -202431612 + MIR SINE MIR 84 185 -77 308 285 28 56 chr3 15605841 15605985 -202431173 - MIR3 SINE MIR -61 147 8 2491 89 0 0 chr3 15605989 15606292 -202430866 - AluSx SINE Alu -9 303 1 395 242 40 16 chr3 15606294 15606418 -202430740 - MIR SINE MIR -62 146 20 377 262 172 47 chr3 15606663 15606721 -202430437 + L1ME4a LINE L1 5665 5714 -407 1865 158 10 13 chr3 15606721 15607019 -202430139 + AluJo SINE Alu 1 297 -15 377 262 172 47 chr3 15607019 15607193 -202429965 + L1ME4a LINE L1 5714 5926 -195 673 217 25 31 chr3 15607217 15607378 -202429780 - MIR SINE MIR -17 245 86 255 221 0 65 chr3 15607576 15607653 -202429505 - MIR SINE MIR -139 123 52 358 238 24 0 chr3 15608032 15608116 -202429042 + MIR SINE MIR 98 183 -79 2353 105 0 0 chr3 15608446 15608752 -202428406 + AluY SINE Alu 1 306 -5 2013 142 13 3 chr3 15608786 15609089 -202428069 - AluJo SINE Alu 0 312 7 2004 139 14 17 chr3 15609107 15609402 -202427756 - AluJb SINE Alu -18 294 1 2316 76 31 3 chr3 15609737 15610027 -202427131 - AluSc SINE Alu -11 298 1 222 349 112 18 chr3 15610236 15610405 -202426753 - MIR SINE MIR -27 235 51 2002 106 0 22 chr3 15610615 15610890 -202426268 + AluSx SINE Alu 44 312 0 364 226 69 0 chr3 15611117 15611219 -202425939 - L1MC5 LINE L1 -35 7926 7818 254 295 32 0 chr3 15611890 15611985 -202425173 - MER113 DNA MER1_type? -415 106 9 336 206 52 81 chr3 15612105 15612241 -202424917 - LTR16B LTR ERVL -4 460 329 2331 108 0 0 chr3 15612654 15612950 -202424208 - AluSx SINE Alu -10 302 7 1587 101 18 0 chr3 15612963 15613180 -202423978 - AluSg/x SINE Alu -19 293 73 210 37 0 0 chr3 15613180 15613207 -202423951 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 672 238 21 0 chr3 15613207 15613350 -202423808 - FRAM SINE Alu -19 147 2 2333 112 3 0 chr3 15613810 15614114 -202423044 + AluSx SINE Alu 1 305 -7 512 225 7 80 chr3 15614284 15614411 -202422747 + MIR SINE MIR 89 205 -57 1601 157 25 46 chr3 15614411 15614581 -202422577 - AluJo SINE Alu -22 290 127 2593 70 0 0 chr3 15614581 15614883 -202422275 + AluY SINE Alu 1 302 -9 1601 157 25 46 chr3 15614883 15614992 -202422166 - AluJo SINE Alu -185 127 17 512 225 7 80 chr3 15614992 15615015 -202422143 + MIR SINE MIR 205 228 -34 297 328 81 15 chr3 15615373 15615571 -202421587 + MIR SINE MIR 40 250 -12 2361 98 0 9 chr3 15616005 15616320 -202420838 - AluSx SINE Alu 0 312 1 182 33 67 0 chr3 15616321 15616351 -202420807 + T-rich Low_complexity Low_complexity 2 33 0 863 167 0 0 chr3 15616354 15616486 -202420672 + AluJb SINE Alu 157 288 -24 652 226 27 21 chr3 15616488 15616674 -202420484 + ORSL DNA AcHobo 89 275 0 817 153 0 0 chr3 15616706 15616824 -202420334 + FLAM_A SINE Alu 2 119 -23 586 190 0 0 chr3 15616854 15616954 -202420204 + AluJb SINE Alu 26 125 -187 2157 114 13 13 chr3 15616955 15617262 -202419896 - AluSx SINE Alu -5 307 1 1905 124 59 0 chr3 15617268 15617541 -202419617 - AluSx SINE Alu -23 289 1 1224 213 8 12 chr3 15618047 15618291 -202418867 - MIR SINE MIR 0 262 20 2302 122 0 0 chr3 15618390 15618702 -202418456 - AluSx SINE Alu 0 312 1 1487 165 36 56 chr3 15618702 15619004 -202418154 - AluJo SINE Alu -16 296 1 23 0 0 0 chr3 15619014 15619037 -202418121 + AT_rich Low_complexity Low_complexity 1 23 0 764 164 16 23 chr3 15619140 15619268 -202417890 + FLAM_C SINE Alu 3 129 -14 1994 147 10 0 chr3 15619286 15619578 -202417580 + AluJb SINE Alu 1 295 -17 2263 113 0 23 chr3 15619578 15619888 -202417270 + AluSx SINE Alu 1 303 -9 25 83 0 0 chr3 15619888 15619948 -202417210 + AT_rich Low_complexity Low_complexity 1 60 0 782 186 0 0 chr3 15620034 15620158 -202417000 - FLAM_C SINE Alu -18 125 2 312 70 0 0 chr3 15620225 15620268 -202416890 + (CA)n Simple_repeat Simple_repeat 2 44 0 276 303 94 59 chr3 15620369 15620623 -202416535 - L2 LINE L2 -41 3231 2969 387 264 28 9 chr3 15621051 15621157 -202416001 + MIR SINE MIR 20 127 -135 553 115 0 0 chr3 15621685 15621763 -202415395 + U6 snRNA snRNA 1 78 -29 337 318 59 6 chr3 15621845 15622015 -202415143 + L1M4 LINE L1 4055 4233 -1913 433 380 54 0 chr3 15622315 15622520 -202414638 - MIR SINE MIR -14 248 33 2429 107 0 0 chr3 15622615 15622925 -202414233 + AluSx SINE Alu 1 310 -2 710 328 26 9 chr3 15623151 15623383 -202413775 - MIR SINE MIR -1 261 26 1841 171 26 0 chr3 15623390 15623694 -202413464 + AluJo SINE Alu 1 312 0 2426 90 0 0 chr3 15623781 15624091 -202413067 - AluY SINE Alu -1 310 1 2273 98 10 0 chr3 15624916 15625213 -202411945 - AluSq SINE Alu -13 300 1 1169 45 0 0 chr3 15625584 15625716 -202411442 + AluY SINE Alu 1 132 -179 2594 66 0 0 chr3 15625722 15626027 -202411131 - AluY SINE Alu -6 305 1 1567 147 105 11 chr3 15626035 15626301 -202410857 - AluJb SINE Alu -21 291 1 1900 102 98 0 chr3 15626398 15626662 -202410496 - AluSx SINE Alu -22 290 1 679 261 101 20 chr3 15627421 15627620 -202409538 + MER58C DNA MER1_type 1 215 0 223 316 10 41 chr3 15627689 15627787 -202409371 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 274 219 78 0 chr3 15627851 15627915 -202409243 - L2 LINE L2 -51 3221 3153 433 181 81 128 chr3 15628012 15628161 -202408997 + MER103 DNA DNA 24 165 -1 2322 117 0 0 chr3 15628529 15628836 -202408322 + AluSx SINE Alu 1 307 -5 291 196 65 33 chr3 15628858 15628950 -202408208 + MIR SINE MIR 60 154 -108 1161 108 0 0 chr3 15629162 15629191 -202407967 + (CCCA)n Simple_repeat Simple_repeat 1 205 0 1161 108 0 0 chr3 15629191 15629367 -202407791 + (CCCA)n Simple_repeat Simple_repeat 3 178 0 489 222 95 16 chr3 15629998 15630124 -202407034 - MIR SINE MIR -116 146 11 2403 85 0 3 chr3 15630398 15630704 -202406454 - AluY SINE Alu -6 305 1 222 305 12 0 chr3 15630744 15630826 -202406332 + (TA)n Simple_repeat Simple_repeat 2 84 0 2077 105 3 86 chr3 15631342 15631667 -202405491 + AluSx SINE Alu 1 298 -14 2273 110 0 7 chr3 15631867 15632166 -202404992 + AluSx SINE Alu 1 297 -15 267 313 114 30 chr3 15632178 15632344 -202404814 - MIR SINE MIR -35 227 48 2454 56 0 3 chr3 15632368 15632654 -202404504 - AluY SINE Alu -5 306 22 345 270 63 48 chr3 15632704 15632830 -202404328 - MIR SINE MIR -88 174 47 27 0 0 0 chr3 15632932 15632959 -202404199 + AT_rich Low_complexity Low_complexity 1 27 0 241 353 85 0 chr3 15633480 15633633 -202403525 + L1ME LINE L1 5534 5699 -422 2267 92 0 26 chr3 15633643 15633947 -202403211 - AluSx SINE Alu -16 296 1 836 206 0 0 chr3 15633979 15634120 -202403038 - FRAM SINE Alu -35 141 1 1778 188 101 3 chr3 15634124 15634502 -202402656 - L1ME1 LINE L1 -62 6104 5690 2193 108 10 10 chr3 15634525 15634831 -202402327 + AluSx SINE Alu 1 306 -6 332 250 32 90 chr3 15634943 15635011 -202402147 + MIR SINE MIR 114 184 -78 875 165 0 88 chr3 15635011 15635193 -202401965 - FRAM SINE Alu 0 166 1 332 250 32 90 chr3 15635193 15635280 -202401878 + MIR SINE MIR 184 260 -2 1036 191 23 56 chr3 15635289 15635448 -202401710 - AluJo SINE Alu -21 291 139 2112 131 3 13 chr3 15635448 15635762 -202401396 - AluSx SINE Alu -1 311 1 1036 191 23 56 chr3 15635762 15635817 -202401341 - AluJo SINE Alu -173 139 84 22 35 0 0 chr3 15635850 15635879 -202401279 + AT_rich Low_complexity Low_complexity 1 29 0 2027 151 0 3 chr3 15636001 15636299 -202400859 - AluSx SINE Alu -15 297 1 759 179 8 0 chr3 15636396 15636519 -202400639 - FLAM_C SINE Alu -17 126 3 2539 50 0 3 chr3 15636551 15636850 -202400308 + AluY SINE Alu 1 298 -13 1566 207 4 0 chr3 15637486 15637742 -202399416 + AluJb SINE Alu 1 257 -55 2112 134 0 6 chr3 15637743 15638056 -202399102 - AluSx SINE Alu -1 311 1 24 85 0 0 chr3 15638133 15638192 -202398966 + AT_rich Low_complexity Low_complexity 1 59 0 295 335 26 79 chr3 15638472 15638558 -202398600 - MIR SINE MIR -16 246 170 2001 117 10 45 chr3 15638558 15638866 -202398292 - AluSx SINE Alu -15 297 1 295 335 26 79 chr3 15638866 15638931 -202398227 - MIR SINE MIR -92 170 103 970 142 58 0 chr3 15640011 15640166 -202396992 - AluSg/x SINE Alu -12 298 135 184 148 0 0 chr3 15640202 15640229 -202396929 - MIR3 SINE MIR -27 181 155 285 261 194 45 chr3 15640404 15640538 -202396620 - MIR3 SINE MIR -25 183 30 549 312 84 15 chr3 15640841 15641046 -202396112 - L2 LINE L2 -341 2973 2745 2353 117 7 0 chr3 15641046 15641354 -202395804 - AluSx SINE Alu -2 310 1 549 312 84 15 chr3 15641354 15641411 -202395747 - L2 LINE L2 -569 2745 2693 1397 236 55 18 chr3 15641480 15641878 -202395280 - MLT1J LTR MaLR 0 511 99 247 326 45 11 chr3 15641909 15641998 -202395160 - L2 LINE L2 -224 3048 2957 311 333 0 60 chr3 15642048 15642198 -202394960 + MIR3 SINE MIR 1 141 -67 2526 71 3 0 chr3 15642232 15642540 -202394618 + AluY SINE Alu 1 309 -2 398 52 0 17 chr3 15642620 15642678 -202394480 + (TG)n Simple_repeat Simple_repeat 1 57 0 198 143 0 0 chr3 15642804 15642839 -202394319 + (CA)n Simple_repeat Simple_repeat 2 36 0 396 251 131 73 chr3 15643002 15643261 -202393897 - MLT1K LTR MaLR -162 426 153 337 302 102 50 chr3 15643790 15644137 -202393021 + L2 LINE L2 2344 2714 -600 2310 78 0 56 chr3 15644137 15644458 -202392700 + AluSx SINE Alu 1 303 -9 337 302 102 50 chr3 15644458 15644494 -202392664 + L2 LINE L2 2714 2747 -567 2316 110 0 3 chr3 15644575 15644876 -202392282 + AluSx SINE Alu 1 300 -12 1414 170 117 14 chr3 15644886 15645168 -202391990 + AluJb SINE Alu 1 311 -1 2262 104 7 7 chr3 15645168 15645476 -202391682 + AluSq SINE Alu 1 308 -5 2206 136 0 7 chr3 15645541 15645851 -202391307 - AluSx SINE Alu -4 308 1 775 237 6 17 chr3 15645875 15646052 -202391106 + MER5B DNA MER1_type 4 178 0 447 226 182 17 chr3 15646223 15646280 -202390878 + MIR SINE MIR 2 48 -214 2359 173 88 11 chr3 15646280 15646724 -202390434 - MER66A LTR ERV1 0 478 1 447 226 182 17 chr3 15646724 15646847 -202390311 + MIR SINE MIR 48 212 -50 438 304 22 77 chr3 15647666 15647939 -202389219 - MIR SINE MIR 0 262 5 286 294 125 22 chr3 15647966 15648102 -202389056 + MIR SINE MIR 61 210 -52 752 215 101 0 chr3 15648191 15648349 -202388809 + MIR SINE MIR 86 259 -3 350 115 16 0 chr3 15648350 15648411 -202388747 + (TA)n Simple_repeat Simple_repeat 1 62 0 1906 138 39 0 chr3 15648443 15648726 -202388432 - AluSx SINE Alu -18 294 1 2282 127 0 3 chr3 15648849 15649157 -202388001 - AluSx SINE Alu -5 307 1 2493 82 0 0 chr3 15649683 15649986 -202387172 - AluSx SINE Alu -9 303 1 2463 69 3 3 chr3 15650144 15650448 -202386710 + AluY SINE Alu 1 304 -7 1649 155 34 26 chr3 15650613 15650878 -202386280 - AluJo SINE Alu -45 267 1 245 197 115 0 chr3 15651436 15651497 -202385661 + L2 LINE L2 2792 2859 -455 193 290 129 32 chr3 15651598 15651722 -202385436 - L2 LINE L2 -554 2760 2625 2475 78 0 7 chr3 15652602 15652910 -202384248 - AluSx SINE Alu -6 306 1 182 33 67 0 chr3 15652911 15652941 -202384217 + T-rich Low_complexity Low_complexity 2 33 0 854 167 0 0 chr3 15652944 15653076 -202384082 + AluJb SINE Alu 157 288 -24 639 226 27 21 chr3 15653078 15653264 -202383894 + ORSL DNA AcHobo 89 275 0 809 153 0 0 chr3 15653296 15653414 -202383744 + FLAM_A SINE Alu 2 119 -14 237 214 36 0 chr3 15653444 15653500 -202383658 + AluJ/FLAM SINE Alu 26 83 -219 1997 142 7 3 chr3 15653617 15653913 -202383245 + AluSx SINE Alu 1 297 -15 2208 99 10 7 chr3 15653926 15654219 -202382939 + AluSg SINE Alu 1 294 -16 2429 89 3 3 chr3 15654309 15654612 -202382546 - AluSp SINE Alu -10 303 1 1256 185 104 57 chr3 15654881 15655178 -202381980 + AluJo SINE Alu 1 311 -1 2323 91 0 0 chr3 15655178 15655509 -202381649 + AluY SINE Alu 1 331 0 893 146 0 33 chr3 15655531 15655682 -202381476 + AluSq/x SINE Alu 1 146 -166 1328 179 9 0 chr3 15655686 15655910 -202381248 + AluJb SINE Alu 85 310 -2 510 158 246 0 chr3 15656602 15656716 -202380442 - FLAM_C SINE Alu 0 143 2 2228 126 0 0 chr3 15656941 15657243 -202379915 - AluSg SINE Alu -8 302 1 219 320 70 39 chr3 15657319 15657447 -202379711 + MIR SINE MIR 91 222 -40 24 0 0 0 chr3 15657622 15657646 -202379512 + AT_rich Low_complexity Low_complexity 1 24 0 443 232 0 65 chr3 15657736 15657874 -202379284 + MIR SINE MIR 50 178 -84 2643 136 106 6 chr3 15658519 15658925 -202378233 + L1MB7 LINE L1 5390 5863 -315 4635 47 33 0 chr3 15658925 15659497 -202377661 + LTR10C LTR ERV1 1 591 0 2643 136 106 6 chr3 15659497 15659619 -202377539 + L1MB7 LINE L1 5863 5971 -207 2163 128 0 13 chr3 15659673 15659977 -202377181 - AluSg SINE Alu -7 303 4 316 93 56 0 chr3 15659984 15660038 -202377120 + L1MB7 LINE L1 6119 6175 -9 349 261 91 53 chr3 15660145 15660414 -202376744 - L1MC4a LINE L1 -549 5572 5487 2426 68 0 36 chr3 15660414 15660721 -202376437 - AluY SINE Alu -15 296 1 349 261 91 53 chr3 15660721 15660798 -202376360 - L1MC4a LINE L1 -634 5487 5414 2360 63 25 0 chr3 15660808 15661094 -202376064 - AluY SINE Alu -18 293 1 1918 139 3 7 chr3 15661186 15661487 -202375671 - AluJb SINE Alu -12 300 1 350 261 191 21 chr3 15661487 15661603 -202375555 - L1MC4a LINE L1 -813 5333 5238 1865 105 79 4 chr3 15661603 15661880 -202375278 - AluJb SINE Alu -14 298 1 350 261 191 21 chr3 15661880 15661951 -202375207 - L1MC4a LINE L1 -908 5238 5114 267 196 27 0 chr3 15661975 15662035 -202375123 + MIR SINE MIR 93 153 -58 236 280 0 0 chr3 15662356 15662406 -202374752 - MIR SINE MIR -112 96 47 1980 82 56 43 chr3 15662732 15663037 -202374121 - AluSx SINE Alu -3 309 1 647 176 146 24 chr3 15663167 15663332 -202373826 - MER5A DNA MER1_type 0 189 5 180 294 189 7 chr3 15664594 15664737 -202372421 - MIR SINE MIR -4 258 90 181 272 111 12 chr3 15664797 15664878 -202372280 + L3 LINE CR1 1322 1410 -167 1672 164 21 7 chr3 15665983 15666263 -202370895 + AluSx SINE Alu 11 294 -18 630 151 126 17 chr3 15666270 15666389 -202370769 + FLAM_C SINE Alu 1 132 -1 7716 25 6 0 chr3 15666391 15667584 -202369574 + L1PA3 LINE L1 4963 6155 0 4152 31 0 0 chr3 15667075 15667585 -202369573 + L1PA3 LINE L1 5647 6178 0 199 0 0 0 chr3 15667585 15667607 -202369551 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 462 241 127 45 chr3 15667625 15667845 -202369313 + L1MEc LINE L1 93 330 -6066 2214 90 3 0 chr3 15667846 15668136 -202369022 + AluSx SINE Alu 1 291 -21 231 151 0 0 chr3 15668171 15668191 -202368967 + A-rich Low_complexity Low_complexity 1 20 -33 1804 100 12 0 chr3 15668191 15668441 -202368717 + AluSx SINE Alu 1 253 -59 231 151 0 0 chr3 15668441 15668473 -202368685 + A-rich Low_complexity Low_complexity 19 53 0 2274 47 54 7 chr3 15668689 15668986 -202368172 - AluY SINE Alu 0 311 1 2118 96 4 0 chr3 15669136 15669417 -202367741 - AluSg SINE Alu -28 282 1 315 320 75 27 chr3 15669428 15669575 -202367583 + L2 LINE L2 3159 3312 -1 568 146 62 0 chr3 15669724 15669820 -202367338 + U13 snRNA snRNA 3 104 0 1943 122 0 7 chr3 15669848 15670144 -202367014 + AluJb SINE Alu 3 296 -16 281 160 264 66 chr3 15671338 15671444 -202365714 - MER5A DNA MER1_type -2 187 61 32 31 0 46 chr3 15671444 15671471 -202365687 + AT_rich Low_complexity Low_complexity 1 28 -34 322 44 0 0 chr3 15671471 15671516 -202365642 - L1PA3 LINE L1 0 6155 6111 32 31 0 46 chr3 15671516 15671553 -202365605 + AT_rich Low_complexity Low_complexity 28 62 0 318 256 0 0 chr3 15671553 15671631 -202365527 - MER5A DNA MER1_type -111 78 1 279 227 18 118 chr3 15671751 15671861 -202365297 - MER103 DNA DNA -65 101 3 1009 229 13 34 chr3 15671943 15672179 -202364979 + MIR SINE MIR 20 250 -12 224 291 0 0 chr3 15674964 15675019 -202362139 + (CA)n Simple_repeat Simple_repeat 1 55 0 227 214 18 18 chr3 15676553 15676609 -202360549 + L2 LINE L2 3258 3313 0 952 229 80 82 chr3 15677112 15677501 -202359657 + Charlie4a DNA MER1_type 120 507 -1 2377 147 17 17 chr3 15677775 15678182 -202358976 + L1MB3 LINE L1 5774 6180 -3 390 121 0 0 chr3 15678853 15678919 -202358239 + (TG)n Simple_repeat Simple_repeat 1 66 0 327 266 57 16 chr3 15679587 15679711 -202357447 - MIR3 SINE MIR -77 131 3 398 226 66 44 chr3 15681101 15681238 -202355920 + MIR3 SINE MIR 19 158 -50 232 129 0 113 chr3 15681485 15681547 -202355611 - L2 LINE L2 -93 3179 3125 194 316 218 10 chr3 15681779 15681972 -202355186 - MIR SINE MIR -10 252 20 358 232 36 72 chr3 15682750 15682888 -202354270 - MIR SINE MIR -80 182 50 275 266 124 0 chr3 15683380 15683493 -202353665 + MIR3 SINE MIR 45 171 -37 1167 278 124 2 chr3 15683623 15684041 -202353117 + L1MC4 LINE L1 7574 8042 0 383 295 66 12 chr3 15684086 15684252 -202352906 + Charlie8 DNA MER1_type 32 206 -2211 194 281 207 2 chr3 15684480 15684599 -202352559 - MIR SINE MIR -61 147 9 330 290 0 69 chr3 15684637 15684768 -202352390 - MIR SINE MIR -57 205 84 212 344 52 0 chr3 15685241 15685337 -202351821 - MIR SINE MIR -147 115 15 274 236 251 5 chr3 15685352 15685548 -202351610 - MIR3 SINE MIR -6 256 7 233 329 52 45 chr3 15686153 15686308 -202350850 - L3 LINE CR1 -58 1519 1364 253 325 196 0 chr3 15686572 15686735 -202350423 - L3 LINE CR1 -952 625 431 587 267 198 42 chr3 15687715 15688048 -202349110 + L2 LINE L2 2926 3310 -3 545 324 89 29 chr3 15688069 15688384 -202348774 + L2 LINE L2 2854 3187 -85 364 256 284 4 chr3 15688568 15688835 -202348323 + L2 LINE L2 2682 3023 -290 288 324 37 0 chr3 15688914 15689022 -202348136 + L2 LINE L2 3200 3311 -2 376 248 46 18 chr3 15689080 15689189 -202347969 + L2 LINE L2 3189 3300 -13 799 192 99 16 chr3 15690104 15690286 -202346872 + MER117 DNA MER1_type 1 197 0 548 267 161 14 chr3 15690855 15691072 -202346086 - MIR SINE MIR -1 261 13 311 286 111 8 chr3 15691091 15691217 -202345941 + MIR SINE MIR 77 215 -47 320 268 118 1 chr3 15691438 15691562 -202345596 + MIR SINE MIR 29 163 -62 190 272 40 96 chr3 15692178 15692303 -202344855 - MIR3 SINE MIR -89 119 2 501 276 79 39 chr3 15692772 15692975 -202344183 + MIR SINE MIR 52 262 0 2052 117 0 32 chr3 15693315 15693624 -202343534 + AluSx SINE Alu 1 299 -13 1504 178 0 36 chr3 15693636 15693911 -202343247 + AluJo SINE Alu 1 265 -47 249 306 0 0 chr3 15693991 15694063 -202343095 - MIR SINE MIR -115 147 76 22 35 0 0 chr3 15694625 15694654 -202342504 + AT_rich Low_complexity Low_complexity 1 29 0 341 266 0 81 chr3 15694961 15695085 -202342073 + MIR SINE MIR 103 216 -46 371 270 92 25 chr3 15695371 15695534 -202341624 + MIR SINE MIR 61 234 -28 307 89 36 0 chr3 15696167 15696223 -202340935 + CT-rich Low_complexity Low_complexity 2 59 0 251 321 0 0 chr3 15697753 15697834 -202339324 + MIR3 SINE MIR 78 158 -50 553 240 91 11 chr3 15697943 15698118 -202339040 + MIR SINE MIR 29 217 -45 312 325 18 0 chr3 15698175 15698289 -202338869 - L2 LINE L2 -541 2773 2658 358 267 107 7 chr3 15698949 15699099 -202338059 - LTR16A1 LTR ERVL -30 427 263 299 211 0 0 chr3 15700081 15700138 -202337020 + MIR SINE MIR 85 141 -67 1013 241 70 70 chr3 15700142 15700516 -202336642 + L2 LINE L2 2940 3313 0 222 255 0 0 chr3 15700587 15700634 -202336524 - L2 LINE L2 -3 3310 3264 * 626 237 39 56 chr3 15700614 15700846 -202336312 - MIR SINE MIR -7 255 28 852 241 20 5 chr3 15701319 15701518 -202335640 - Charlie8 DNA MER1_type -2144 273 72 976 160 16 94 chr3 15702634 15702697 -202334461 - MER33 DNA MER1_type -2261 363 297 843 146 8 8 chr3 15702697 15702827 -202334331 + FLAM_C SINE Alu 2 131 -2 976 160 16 94 chr3 15702827 15703144 -202334014 - MER33 DNA MER1_type -2327 297 6 246 318 96 44 chr3 15703207 15703448 -202333710 + MIR3 SINE MIR 11 259 -3 320 316 105 0 chr3 15703916 15704049 -202333109 - HAL1b LINE L1 0 1348 1202 365 270 108 0 chr3 15705470 15705581 -202331577 + MIR SINE MIR 27 149 -113 341 276 45 30 chr3 15706342 15706476 -202330682 + MIR3 SINE MIR 27 162 -46 250 249 58 45 chr3 15706542 15706646 -202330512 - MIR SINE MIR -96 112 7 1773 194 71 0 chr3 15706828 15707152 -202330006 + MER7A DNA MER2_type 2 346 0 243 284 147 43 chr3 15707153 15707375 -202329783 - MIR SINE MIR -13 249 13 206 214 0 14 chr3 15707827 15707897 -202329261 + CT-rich Low_complexity Low_complexity 2 70 0 372 247 43 0 chr3 15708267 15708360 -202328798 - MIR SINE MIR -49 213 117 207 0 0 0 chr3 15708779 15708802 -202328356 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 361 257 9 28 chr3 15709044 15709153 -202328005 + MIR SINE MIR 37 143 -65 275 347 7 36 chr3 15709430 15709617 -202327541 + G-rich Low_complexity Low_complexity 1 181 0 * 298 311 0 11 chr3 15709528 15709618 -202327540 + GA-rich Low_complexity Low_complexity 4 92 0 23 0 0 0 chr3 15709705 15709728 -202327430 + GC_rich Low_complexity Low_complexity 1 23 0 2406 201 87 14 chr3 15710291 15710799 -202326359 - MLT1H LTR MaLR -3 546 2 610 229 183 0 chr3 15711997 15712172 -202324986 + MIR SINE MIR 12 218 -44 196 322 0 0 chr3 15712283 15712342 -202324816 - MIR SINE MIR -87 121 63 547 161 17 0 chr3 15712991 15713109 -202324049 + (TGGA)n Simple_repeat Simple_repeat 2 121 0 404 276 174 36 chr3 15713286 15713706 -202323452 - Tigger8 DNA MER2_type -2 664 187 1534 159 0 28 chr3 15713767 15714050 -202323108 - AluSx SINE Alu 0 312 38 389 169 8 39 chr3 15714583 15714713 -202322445 + (TGGA)n Simple_repeat Simple_repeat 1 126 0 330 288 212 0 chr3 15714996 15715114 -202322044 - MIR3 SINE MIR -36 172 30 548 313 0 0 chr3 15715121 15715271 -202321887 + MIR SINE MIR 13 162 -100 276 366 68 14 chr3 15715260 15715483 -202321675 - MIR SINE MIR -15 247 17 * 281 316 10 41 chr3 15715527 15715625 -202321533 + MIR SINE MIR 168 262 0 180 360 11 22 chr3 15715736 15715825 -202321333 - MIR SINE MIR -115 147 60 * 293 361 62 5 chr3 15715809 15716017 -202321141 - L2 LINE L2 -240 3032 2813 662 40 0 0 chr3 15917330 15917405 -202119753 - pTR5 LTR ERV1 -2298 140 66 345 224 31 20 chr3 15917405 15917503 -202119655 - LTR30 LTR ERV1 -80 642 544 4876 117 51 73 chr3 15917503 15918515 -202118643 - pTR5 LTR ERV1 -413 2025 743 548 196 0 83 chr3 15918647 15918780 -202118378 - AluJb SINE Alu -88 224 103 456 308 51 10 chr3 15918800 15918995 -202118163 - MIR SINE MIR -59 203 1 2313 104 0 0 chr3 15919548 15919846 -202117312 - AluSg SINE Alu -12 298 1 210 143 0 0 chr3 15920000 15920035 -202117123 + (TG)n Simple_repeat Simple_repeat 2 36 0 2205 93 0 3 chr3 15920036 15920325 -202116833 - AluSq SINE Alu -25 288 1 1911 81 60 25 chr3 15920917 15921202 -202115956 - AluSx SINE Alu -7 305 11 2495 72 0 0 chr3 15921843 15922147 -202115011 - AluY SINE Alu -7 304 1 942 202 62 44 chr3 15922218 15922269 -202114889 - L1MA6 LINE L1 0 6300 6251 2355 107 3 0 chr3 15922269 15922579 -202114579 - AluSp SINE Alu -2 311 1 942 202 62 44 chr3 15922579 15922799 -202114359 - L1MA6 LINE L1 -49 6251 6024 1818 96 0 63 chr3 15923067 15923337 -202113821 - AluSq SINE Alu -12 301 49 263 192 68 14 chr3 15923454 15923527 -202113631 + L1ME3 LINE L1 5624 5700 -464 243 176 0 59 chr3 15923545 15923613 -202113545 + L1MB4 LINE L1 6117 6180 0 894 236 142 36 chr3 15923618 15923948 -202113210 + L1ME3 LINE L1 5703 6067 -95 1345 199 84 47 chr3 15923985 15924388 -202112770 + MER95 LTR ERV 14 431 0 1995 134 34 0 chr3 15924709 15925007 -202112151 + AluSx SINE Alu 1 308 -4 523 251 41 23 chr3 15925384 15925555 -202111603 + L2 LINE L2 3125 3298 -15 2411 80 0 10 chr3 15926055 15926367 -202110791 + AluSc SINE Alu 1 309 0 499 350 68 23 chr3 15926678 15927207 -202109951 + L2 LINE L2 2140 2692 -622 1989 134 20 0 chr3 15927347 15927639 -202109519 - AluSx SINE Alu -14 298 1 201 345 43 7 chr3 15927717 15927856 -202109302 - L2 LINE L2 -1365 1949 1806 202 216 0 0 chr3 15931183 15931220 -202105938 + CT-rich Low_complexity Low_complexity 2 38 0 2211 103 0 10 chr3 15932258 15932558 -202104600 + AluSx SINE Alu 1 297 -15 1052 185 95 18 chr3 15933398 15933620 -202103538 - MER8 DNA MER2_type 0 239 1 296 235 0 0 chr3 15933655 15933723 -202103435 + MER5A DNA MER1_type 39 106 -83 2216 98 18 0 chr3 15934011 15934297 -202102861 - AluSx SINE Alu -21 291 1 1471 186 90 4 chr3 15935097 15935376 -202101782 + AluJb SINE Alu 1 303 -9 235 306 192 29 chr3 15935409 15935654 -202101504 + MARNA DNA Mariner 125 409 -177 807 151 66 0 chr3 15935656 15935808 -202101350 - FRAM SINE Alu -15 161 1 288 319 26 9 chr3 15936244 15936360 -202100798 + L2 LINE L2 3193 3310 -3 551 220 57 0 chr3 15936511 15936652 -202100506 - MER5A DNA MER1_type -32 157 9 189 0 0 0 chr3 15936830 15936851 -202100307 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2521 53 0 7 chr3 15936909 15937210 -202099948 + AluY SINE Alu 12 310 -1 412 162 0 0 chr3 15937325 15937393 -202099765 + Alu SINE Alu 240 307 -5 620 286 17 6 chr3 15937780 15937955 -202099203 - MIR3 SINE MIR -11 197 21 2076 106 48 0 chr3 15938051 15938343 -202098815 - AluSx SINE Alu -6 306 1 339 69 0 69 chr3 15938369 15938427 -202098731 + MADE1 DNA Mariner 1 54 -26 2147 132 3 0 chr3 15938565 15938876 -202098282 - AluSx SINE Alu 0 312 1 545 242 47 56 chr3 15939464 15939679 -202097479 - MLT1L LTR MaLR -208 407 195 385 307 70 35 chr3 15939961 15940189 -202096969 - MLT1K LTR MaLR -8 580 345 2079 133 0 3 chr3 15940541 15940885 -202096273 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 15941461 15941485 -202095673 + AT_rich Low_complexity Low_complexity 1 24 0 2534 78 7 0 chr3 15942108 15942452 -202094706 + AluSq SINE Alu 1 346 0 196 260 83 42 chr3 15942467 15942563 -202094595 + L2 LINE L2 3109 3208 -64 2351 103 0 3 chr3 15943503 15943814 -202093344 + AluSx SINE Alu 1 310 -2 628 310 141 6 chr3 15945007 15945326 -202091832 + L2 LINE L2 2440 2801 -513 502 308 89 32 chr3 15945327 15945388 -202091770 + L2 LINE L2 2906 2962 -310 2347 63 13 7 chr3 15945388 15945688 -202091470 - AluY SINE Alu -9 302 1 502 308 89 32 chr3 15945688 15945973 -202091185 + L2 LINE L2 2962 3272 0 2228 57 0 11 chr3 15946245 15946528 -202090630 + AluY SINE Alu 1 280 -31 188 65 0 32 chr3 15946792 15946823 -202090335 + (GGA)n Simple_repeat Simple_repeat 1 30 0 328 170 0 0 chr3 15946913 15946966 -202090192 + MIR SINE MIR 204 256 -6 1886 155 30 3 chr3 15946981 15947278 -202089880 - AluJb SINE Alu -7 305 1 184 308 66 0 chr3 15947665 15947756 -202089402 + MIR SINE MIR 27 123 -139 1989 138 0 0 chr3 15947868 15948150 -202089008 - AluSx SINE Alu -10 302 21 2439 83 3 0 chr3 15950023 15950325 -202086833 - AluSq SINE Alu -10 303 1 310 267 86 26 chr3 15950847 15950963 -202086195 + L2 LINE L2 3145 3267 -5 254 275 38 12 chr3 15951071 15951151 -202086007 - MIR3 SINE MIR -22 186 105 2240 100 0 10 chr3 15951270 15951570 -202085588 - AluSx SINE Alu -15 297 1 202 216 0 0 chr3 15952608 15952645 -202084513 + GA-rich Low_complexity Low_complexity 2 38 0 201 345 43 7 chr3 15955971 15956110 -202081048 + L2 LINE L2 1806 1949 -1365 1989 134 20 0 chr3 15956188 15956480 -202080678 + AluSx SINE Alu 1 298 -14 499 350 68 23 chr3 15956620 15957149 -202080009 - L2 LINE L2 -622 2692 2140 2411 80 0 10 chr3 15957460 15957772 -202079386 - AluSc SINE Alu 0 309 1 523 251 41 23 chr3 15958272 15958443 -202078715 - L2 LINE L2 -15 3298 3125 1995 134 34 0 chr3 15958820 15959118 -202078040 - AluSx SINE Alu -4 308 1 1345 199 84 47 chr3 15959439 15959842 -202077316 - MER95 LTR ERV 0 431 14 974 206 76 129 chr3 15959879 15960484 -202076674 - L1ME3 LINE L1 -95 6067 5531 2309 99 0 3 chr3 15960484 15960796 -202076362 - AluSq SINE Alu -2 311 1 974 206 76 129 chr3 15960796 15960910 -202076248 - L1ME3 LINE L1 -631 5531 5412 1911 81 60 25 chr3 15961388 15961673 -202075485 - AluSx SINE Alu -7 305 11 2495 72 0 0 chr3 15962314 15962618 -202074540 - AluY SINE Alu -7 304 1 948 202 62 44 chr3 15962689 15962740 -202074418 - L1MA6 LINE L1 0 6300 6251 2320 106 3 3 chr3 15962740 15963051 -202074107 - AluSp SINE Alu -2 311 1 948 202 62 44 chr3 15963051 15963271 -202073887 - L1MA6 LINE L1 -49 6251 6024 2229 92 0 54 chr3 15963539 15963855 -202073303 - AluSq SINE Alu -12 301 3 330 26 0 0 chr3 15963899 15963938 -202073220 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 396 0 0 0 chr3 15963937 15963981 -202073177 + (TG)n Simple_repeat Simple_repeat 2 45 0 355 264 80 25 chr3 15964023 15964186 -202072972 - MARNA DNA Mariner -345 241 70 1567 166 17 6 chr3 15965108 15965452 -202071706 - L1MB8 LINE L1 -1 6177 5765 276 340 10 10 chr3 15966992 15967092 -202070066 - MER5A DNA MER1_type -89 100 1 2109 125 14 3 chr3 15967144 15967441 -202069717 + AluJb SINE Alu 3 302 -10 1013 228 30 25 chr3 15967641 15967878 -202069280 - MER8 DNA MER2_type 0 239 2 4448 156 54 6 chr3 15969083 15970024 -202067134 + L1MB7 LINE L1 5193 6176 -8 690 274 49 10 chr3 15970890 15971094 -202066064 + MIR SINE MIR 7 218 -44 261 341 38 8 chr3 15973897 15974029 -202063129 + L2 LINE L2 2882 3017 -255 430 167 19 19 chr3 15974117 15974225 -202062933 + Charlie1 DNA MER1_type 2594 2701 -60 341 113 0 0 chr3 15974226 15974279 -202062879 - L1MB8 LINE L1 -5 6173 6121 254 186 0 0 chr3 15975289 15975332 -202061826 - L2 LINE L2 -6 3266 3224 1005 292 96 42 chr3 15975663 15976289 -202060869 + L1MC4 LINE L1 7382 8041 -1 216 311 38 45 chr3 15977136 15977268 -202059890 - MIR SINE MIR -119 143 13 300 301 0 11 chr3 15979617 15979641 -202057517 + CT-rich Low_complexity Low_complexity 1 24 -68 1762 191 42 26 chr3 15979641 15980023 -202057135 - MLT1B LTR MaLR 0 390 3 300 301 0 11 chr3 15980023 15980091 -202057067 + CT-rich Low_complexity Low_complexity 24 92 0 255 353 8 38 chr3 15980129 15980262 -202056896 + MIR SINE MIR 19 147 -61 2267 106 0 20 chr3 15981348 15981651 -202055507 + AluSq SINE Alu 12 308 -5 2065 119 54 0 chr3 15981857 15982151 -202055007 - AluSg SINE Alu 0 310 1 463 290 113 66 chr3 15982391 15982780 -202054378 - L1ME3 LINE L1 -196 5966 5548 1990 113 17 7 chr3 15983336 15983627 -202053531 - AluSx SINE Alu -18 294 1 1930 140 0 40 chr3 15983985 15984307 -202052851 + AluJb SINE Alu 1 309 -3 2296 105 0 7 chr3 15984354 15984658 -202052500 + AluSc SINE Alu 1 302 -7 271 341 0 0 chr3 15984954 15985045 -202052113 + MIR3 SINE MIR 104 194 -14 233 132 0 0 chr3 15985368 15985406 -202051752 - MIR SINE MIR -101 161 124 2596 61 0 6 chr3 15985637 15985950 -202051208 - AluY SINE Alu 0 311 1 480 242 16 23 chr3 15986216 15986344 -202050814 - MIR SINE MIR -128 134 8 203 244 0 171 chr3 15987141 15987264 -202049894 + MIR SINE MIR 119 220 -42 2571 70 0 0 chr3 15987639 15987940 -202049218 - AluY SINE Alu -10 301 1 576 296 17 17 chr3 15988062 15988234 -202048924 - MIR SINE MIR -75 187 16 465 283 82 6 chr3 15988950 15989109 -202048049 + MIR SINE MIR 12 182 -80 1735 159 0 88 chr3 15990567 15990907 -202046251 + AluJo SINE Alu 3 312 0 243 0 0 0 chr3 15991120 15991147 -202046011 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1866 144 22 0 chr3 15991149 15991419 -202045739 - AluSx SINE Alu -36 276 1 180 0 0 0 chr3 15991537 15991557 -202045601 + (T)n Simple_repeat Simple_repeat 1 20 0 2504 74 0 0 chr3 15991644 15991941 -202045217 - AluY SINE Alu -14 297 1 2001 150 0 7 chr3 15992196 15992496 -202044662 + AluJb SINE Alu 1 298 -14 526 276 90 57 chr3 15992545 15993092 -202044066 - L1M4 LINE L1 -1732 4414 3850 288 77 0 0 chr3 15993113 15993152 -202044006 + (TG)n Simple_repeat Simple_repeat 2 40 0 246 89 0 0 chr3 15993152 15993197 -202043961 + LTR66 LTR ERVL 394 438 -172 2106 127 21 0 chr3 15993203 15993486 -202043672 - AluSx SINE Alu -23 289 1 2432 81 0 3 chr3 15994636 15994934 -202042224 + AluSg SINE Alu 5 301 -9 2023 138 0 0 chr3 15996806 15997088 -202040070 + AluSx SINE Alu 21 302 -10 221 308 66 0 chr3 15997200 15997291 -202039867 - MIR SINE MIR -139 123 27 1916 155 30 3 chr3 15997678 15997975 -202039183 + AluJb SINE Alu 1 305 -7 350 268 0 12 chr3 15997990 15998072 -202039086 - MIR SINE MIR -6 256 176 188 65 0 32 chr3 15998133 15998164 -202038994 + (TCC)n Simple_repeat Simple_repeat 1 30 0 185 298 8 105 chr3 15998248 15998372 -202038786 - L2 LINE L2 0 3313 3202 1774 193 3 0 chr3 15998527 15998822 -202038336 + AluJb SINE Alu 1 296 -16 203 398 34 0 chr3 15998841 15998959 -202038199 + MIR SINE MIR 138 259 -3 362 311 107 6 chr3 16002804 16002981 -202034177 + MIR3 SINE MIR 11 205 -3 220 346 89 0 chr3 16002997 16003098 -202034060 + L2 LINE L2 2512 2621 -693 531 275 114 65 chr3 16003165 16003594 -202033564 + L2 LINE L2 2863 3312 -1 310 303 81 27 chr3 16003793 16004014 -202033144 - MIR SINE MIR -10 252 20 318 264 57 57 chr3 16004442 16004582 -202032576 + MIR SINE MIR 2 141 -67 1564 164 3 89 chr3 16004647 16004983 -202032175 + AluJb SINE Alu 2 308 -4 995 249 9 0 chr3 16005254 16005471 -202031687 - MIR SINE MIR -27 235 17 1644 235 68 45 chr3 16005954 16006525 -202030633 - L1ME1 LINE L1 -310 5856 5273 1230 169 0 41 chr3 16006525 16006744 -202030414 + AluJb SINE Alu 85 294 -18 1280 236 60 64 chr3 16006747 16007015 -202030143 - L1ME1 LINE L1 -873 5273 5006 2426 47 0 4 chr3 16007015 16007292 -202029866 - AluY SINE Alu -35 276 1 1280 236 60 64 chr3 16007292 16007556 -202029602 - L1ME1 LINE L1 -1140 5006 4743 1610 91 0 10 chr3 16009710 16009918 -202027240 + AluSx SINE Alu 1 206 -106 294 276 156 12 chr3 16010924 16011264 -202025894 - L2 LINE L2 -42 3230 2842 1654 145 20 4 chr3 16011983 16012238 -202024920 + AluJo SINE Alu 34 292 -20 2424 107 0 0 chr3 16012255 16012564 -202024594 - AluSx SINE Alu -3 309 1 260 238 36 24 chr3 16013299 16013383 -202023775 + MIR SINE MIR 65 149 -113 2114 143 31 151 chr3 16013437 16013942 -202023216 - L1M4 LINE L1 -370 5808 5244 1832 158 48 10 chr3 16013942 16014234 -202022924 - AluJb SINE Alu -7 305 3 2114 143 31 151 chr3 16014234 16014290 -202022868 - L1M4 LINE L1 -934 5244 5183 430 143 0 0 chr3 16014290 16014360 -202022798 - FLAM_C SINE Alu -2 141 72 2114 143 31 151 chr3 16014360 16014532 -202022626 - L1M4 LINE L1 -995 5183 5100 951 303 110 22 chr3 16014601 16015139 -202022019 - L1MC4a LINE L1 -1762 6046 5462 357 219 16 11 chr3 16015182 16015341 -202021817 - L1ME2 LINE L1 -15 6149 5879 969 188 119 8 chr3 16015344 16015605 -202021553 - L1MA9 LINE L1 -33 6279 5990 1761 245 92 6 chr3 16015614 16016360 -202020798 - L1ME2 LINE L1 -277 5887 5081 317 275 78 60 chr3 16016355 16016480 -202020678 - L1MC4a LINE L1 -747 5399 5278 * 1730 154 20 24 chr3 16016480 16016773 -202020385 - AluJb SINE Alu -3 309 18 317 275 78 60 chr3 16016773 16017159 -202019999 - L1MC4a LINE L1 -868 5278 4889 882 148 0 28 chr3 16017680 16017822 -202019336 - FLAM_C SINE Alu -5 138 1 2382 110 0 0 chr3 16017833 16018141 -202019017 - AluSx SINE Alu -4 308 1 332 270 101 14 chr3 16018330 16018478 -202018680 - L1ME LINE L1 -504 5617 5457 275 307 193 0 chr3 16019287 16019453 -202017705 + MIR SINE MIR 59 256 -6 201 158 0 0 chr3 16024000 16024038 -202013120 + A-rich Low_complexity Low_complexity 5 42 0 251 146 36 36 chr3 16024899 16024954 -202012204 + (CAGG)n Simple_repeat Simple_repeat 4 58 0 296 313 183 42 chr3 16026404 16026813 -202010345 + L3 LINE CR1 456 922 -655 248 330 84 0 chr3 16027739 16027833 -202009325 - MIR SINE MIR -55 153 50 2389 98 10 0 chr3 16027961 16028266 -202008892 - AluSx SINE Alu -4 308 1 225 347 33 33 chr3 16029538 16029688 -202007470 + L2 LINE L2 3118 3267 -5 206 250 181 43 chr3 16029735 16029851 -202007307 + L2 LINE L2 3141 3272 0 227 200 0 0 chr3 16030732 16030782 -202006376 + CT-rich Low_complexity Low_complexity 3 52 0 188 67 33 0 chr3 16032285 16032315 -202004843 + (CA)n Simple_repeat Simple_repeat 2 32 0 814 201 23 0 chr3 16032337 16032511 -202004647 - L1MD2 LINE L1 -31 6328 6151 998 173 6 0 chr3 16035805 16035961 -202001197 + AluJb SINE Alu 137 293 -19 286 236 14 0 chr3 16036007 16036079 -202001079 + L1MB4 LINE L1 6100 6172 -8 21 0 0 0 chr3 16036081 16036102 -202001056 + AT_rich Low_complexity Low_complexity 1 21 0 1849 142 60 0 chr3 16037471 16037753 -201999405 + AluJb SINE Alu 1 299 -13 1981 147 0 3 chr3 16037894 16038186 -201998972 + AluJo SINE Alu 1 291 -21 354 224 0 0 chr3 16038318 16038394 -201998764 - MIR SINE MIR -112 150 75 2160 100 7 0 chr3 16038955 16039384 -201997774 + AluSx SINE Alu 1 431 0 456 323 28 4 chr3 16039480 16039740 -201997418 - L1ME LINE L1 -567 5603 5341 1398 191 108 32 chr3 16039748 16040182 -201996976 + MLT1C LTR MaLR 1 467 0 1463 165 68 28 chr3 16040443 16040764 -201996394 + L1MA5A LINE L1 5957 6290 -7 477 0 0 0 chr3 16040771 16040824 -201996334 + (TG)n Simple_repeat Simple_repeat 2 54 0 229 298 32 48 chr3 16041045 16041169 -201995989 - MIR SINE MIR -55 153 32 2025 133 21 0 chr3 16043302 16043587 -201993571 + AluSx SINE Alu 1 291 -21 239 287 69 10 chr3 16043746 16043847 -201993311 - L3 LINE CR1 -195 1382 1276 28 29 0 0 chr3 16044583 16044618 -201992540 + AT_rich Low_complexity Low_complexity 1 35 0 2415 64 3 0 chr3 16044751 16045033 -201992125 - AluY SINE Alu -28 283 1 2686 157 104 4 chr3 16046006 16046534 -201990624 - L1MB3 LINE L1 0 6183 5603 2198 125 0 16 chr3 16047050 16047353 -201989805 - AluSx SINE Alu -14 298 1 257 273 40 61 chr3 16050188 16050485 -201986673 + L1M1 LINE L1 5282 5572 -728 234 218 64 39 chr3 16050643 16050721 -201986437 - MLT1K LTR MaLR 0 588 509 234 0 0 0 chr3 16050906 16050932 -201986226 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2261 103 10 3 chr3 16051136 16051436 -201985722 + AluSx SINE Alu 1 302 -10 239 304 65 36 chr3 16054698 16054836 -201982322 - MIR SINE MIR -57 205 64 21 0 0 0 chr3 16054866 16054887 -201982271 + AT_rich Low_complexity Low_complexity 1 21 0 2194 120 40 0 chr3 16054893 16055193 -201981965 + AluSx SINE Alu 1 312 0 192 196 0 89 chr3 16055402 16055458 -201981700 + L2 LINE L2 3262 3312 -1 27 62 0 0 chr3 16055547 16055595 -201981563 + AT_rich Low_complexity Low_complexity 1 48 0 2761 16 0 23 chr3 16055626 16055936 -201981222 + AluYb8 SINE Alu 1 303 -15 2395 105 0 0 chr3 16056009 16056313 -201980845 + AluSx SINE Alu 3 306 -6 659 167 125 0 chr3 16056714 16056858 -201980300 + MER5B DNA MER1_type 17 178 0 655 229 177 19 chr3 16057161 16057432 -201979726 + MER5C DNA MER1_type 1 314 -10 1249 170 8 13 chr3 16057750 16057985 -201979173 - MER46A DNA MER2_type 0 236 3 219 259 19 0 chr3 16058072 16058126 -201979032 + L2 LINE L2 3254 3308 -5 320 322 8 16 chr3 16058326 16058447 -201978711 + L1ME4a LINE L1 4549 4668 -1478 582 248 93 90 chr3 16058993 16059729 -201977429 + L1ME4a LINE L1 5282 6024 -97 522 0 0 0 chr3 16060213 16060271 -201976887 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1681 157 46 29 chr3 16060271 16060552 -201976606 - AluJb SINE Alu -26 286 1 291 28 0 0 chr3 16061036 16061072 -201976086 + (CA)n Simple_repeat Simple_repeat 2 37 0 2085 133 36 0 chr3 16061383 16061684 -201975474 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 16062546 16062569 -201974589 + AT_rich Low_complexity Low_complexity 1 23 0 2185 98 0 3 chr3 16062733 16063018 -201974140 - AluSx SINE Alu -8 304 21 1712 278 67 10 chr3 16063595 16064178 -201972980 - L1ME3A LINE L1 -146 6024 5409 787 170 90 66 chr3 16064258 16064470 -201972688 + MER20 DNA MER1_type 1 217 -2 235 343 0 0 chr3 16065403 16065470 -201971688 + MER5B DNA MER1_type 2 68 -110 345 269 21 11 chr3 16066185 16066278 -201970880 + L2 LINE L2 3179 3272 0 240 365 52 9 chr3 16067380 16067495 -201969663 + MIR SINE MIR 16 135 -73 1931 156 0 10 chr3 16068238 16068545 -201968613 - AluJo SINE Alu -8 304 1 1529 157 6 80 chr3 16069317 16069641 -201967517 - pTR5 LTR ERV1 -860 1578 1279 284 307 193 0 chr3 16071527 16071693 -201965465 - MIR SINE MIR -6 256 59 350 270 101 14 chr3 16072502 16072650 -201964508 + L1ME LINE L1 5457 5617 -504 2216 110 0 0 chr3 16072839 16073147 -201964011 + AluSx SINE Alu 1 308 -4 809 148 0 28 chr3 16073158 16073300 -201963858 + FLAM_C SINE Alu 1 138 -5 338 264 83 70 chr3 16073821 16074207 -201962951 + L1MC4a LINE L1 4889 5286 -883 1601 151 21 14 chr3 16074207 16074486 -201962672 + AluJb SINE Alu 18 298 -14 338 264 83 70 chr3 16074486 16074625 -201962533 + L1MC4a LINE L1 5286 5422 -747 * 1873 245 91 6 chr3 16074620 16075370 -201961788 + L1ME2 LINE L1 5081 5891 -273 1024 184 116 15 chr3 16075369 16075636 -201961522 + L1MA9 LINE L1 5986 6279 -33 * 378 202 23 41 chr3 16075634 16075798 -201961360 + L1ME2 LINE L1 5870 6149 -15 * 1022 303 110 22 chr3 16075841 16076379 -201960779 + L1MC4a LINE L1 5462 6046 -1762 2215 145 31 151 chr3 16076448 16076620 -201960538 + L1M4 LINE L1 5100 5291 -887 420 114 0 29 chr3 16076620 16076690 -201960468 + FLAM_C SINE Alu 72 139 -4 2215 145 31 151 chr3 16076690 16076746 -201960412 + L1M4 LINE L1 5291 5352 -826 1629 164 48 10 chr3 16076746 16077038 -201960120 + AluJb SINE Alu 3 305 -7 2215 145 31 151 chr3 16077038 16077543 -201959615 + L1M4 LINE L1 5352 5808 -370 258 238 36 24 chr3 16077597 16077681 -201959477 - MIR SINE MIR -113 149 65 2181 97 3 0 chr3 16078416 16078714 -201958444 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr3 16078942 16078966 -201958192 + AT_rich Low_complexity Low_complexity 1 24 0 1624 175 0 7 chr3 16079443 16079734 -201957424 + AluJo SINE Alu 1 289 -23 1867 136 7 10 chr3 16079908 16080203 -201956955 + AluSx SINE Alu 1 294 -18 1980 182 75 27 chr3 16080376 16080816 -201956342 - LOR1b LTR ERV1 0 461 1 972 226 16 41 chr3 16081122 16081365 -201955793 - L1MC4 LINE L1 -1055 6987 6751 926 173 113 16 chr3 16081429 16081614 -201955544 - MER3 DNA MER1_type -6 203 1 1254 274 139 52 chr3 16081615 16082243 -201954915 - L1MC4a LINE L1 -1158 6650 6078 6453 26 4 0 chr3 16082243 16082981 -201954177 - L1PA3 LINE L1 -3 6152 5412 1254 274 139 52 chr3 16082981 16083043 -201954115 - L1MC4a LINE L1 -1730 6078 6023 2211 82 3 0 chr3 16083043 16083357 -201953801 - AluSp SINE Alu 0 313 1 1254 274 139 52 chr3 16083357 16083632 -201953526 - L1MC4a LINE L1 -1785 6023 5600 324 244 16 81 chr3 16083758 16083881 -201953277 - MIR SINE MIR -10 252 138 182 273 0 18 chr3 16084099 16084154 -201953004 + L2 LINE L2 3256 3309 -4 189 0 0 0 chr3 16084644 16084665 -201952493 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 785 274 79 8 chr3 16085327 16085568 -201951590 - MIR SINE MIR -2 260 3 432 0 0 0 chr3 16087525 16087573 -201949585 + (CA)n Simple_repeat Simple_repeat 2 49 0 237 253 138 0 chr3 16088173 16088260 -201948898 - MER103 DNA DNA -65 101 3 1425 232 41 19 chr3 16088262 16088628 -201948530 + MLT1A2 LTR MaLR 1 374 0 384 309 79 0 chr3 16089919 16090071 -201947087 + L2 LINE L2 3104 3267 -5 1551 154 98 31 chr3 16091472 16091790 -201945368 + MER2 DNA MER2_type 1 339 -6 449 250 7 37 chr3 16091903 16092039 -201945119 - L1MC4 LINE L1 0 8042 7911 319 183 0 0 chr3 16092851 16092911 -201944247 - L1ME3 LINE L1 -58 6104 6045 784 129 187 0 chr3 16092911 16093050 -201944108 - FRAM SINE Alu -14 162 1 691 229 56 19 chr3 16093155 16093369 -201943789 - L1ME3 LINE L1 -127 6035 5814 352 200 0 0 chr3 16093379 16093454 -201943704 - L1ME3 LINE L1 -1597 4549 4475 2095 89 3 10 chr3 16093561 16093863 -201943295 - AluSx SINE Alu -12 300 1 641 256 118 13 chr3 16094068 16094306 -201942852 - L1MC4a LINE L1 -1814 5994 5732 343 106 0 0 chr3 16094325 16094372 -201942786 + MER4E LTR ERV1 651 697 -69 213 109 0 55 chr3 16094372 16094427 -201942731 + (TA)n Simple_repeat Simple_repeat 2 53 0 2514 240 56 32 chr3 16094972 16095852 -201941306 - L1ME3 LINE L1 -1744 4402 3502 628 179 154 38 chr3 16095853 16096093 -201941065 - AluJo SINE Alu -7 305 38 226 340 30 10 chr3 16096307 16096407 -201940751 - L2 LINE L2 -561 2753 2652 308 222 33 33 chr3 16096825 16096916 -201940242 - MIR3 SINE MIR -47 161 70 2394 65 0 3 chr3 16096923 16097231 -201939927 + AluY SINE Alu 1 307 -4 216 236 6 35 chr3 16097340 16097398 -201939760 - MIR SINE MIR -61 147 95 190 279 132 0 chr3 16098275 16098343 -201938815 - MIR3 SINE MIR -54 154 78 407 228 177 32 chr3 16098358 16098516 -201938642 + MIR SINE MIR 20 200 -62 844 201 0 0 chr3 16098723 16098896 -201938262 - AluJb SINE Alu 0 306 134 496 91 0 0 chr3 16098911 16098977 -201938181 + L1MA3 LINE L1 6195 6260 -45 * 2038 96 0 51 chr3 16098977 16099291 -201937867 + AluSx SINE Alu 1 298 -14 835 260 109 30 chr3 16099291 16099615 -201937543 - L1MC4a LINE L1 -1856 5952 5600 * 1159 223 8 0 chr3 16099614 16099874 -201937284 + L1MB5 LINE L1 4915 5176 -970 24 0 0 0 chr3 16099890 16099914 -201937244 + AT_rich Low_complexity Low_complexity 1 24 0 2285 84 0 0 chr3 16099936 16100232 -201936926 - AluSg SINE Alu -14 296 1 2341 202 42 8 chr3 16100248 16100748 -201936410 + L1MB5 LINE L1 5491 6007 -167 616 231 42 7 chr3 16100758 16100901 -201936257 - L1MC4a LINE L1 -2191 5617 5470 21 57 0 0 chr3 16103481 16103516 -201933642 + AT_rich Low_complexity Low_complexity 1 35 0 1083 139 0 0 chr3 16103912 16104077 -201933081 - AluSg/x SINE Alu -10 302 138 1938 103 30 30 chr3 16104532 16104833 -201932325 + AluSg SINE Alu 1 301 -9 204 333 19 0 chr3 16105196 16105250 -201931908 - L2 LINE L2 -13 3259 3205 363 297 103 7 chr3 16105457 16105612 -201931546 + MIR SINE MIR 20 189 -73 303 156 0 0 chr3 16105640 16105685 -201931473 - MER47A DNA MER2_type 0 366 322 803 117 17 0 chr3 16105688 16105808 -201931350 - AluSg/x SINE Alu -12 298 177 1079 116 29 6 chr3 16105811 16105983 -201931175 - MER47A DNA MER2_type -121 245 70 2026 102 3 14 chr3 16106201 16106494 -201930664 + AluSp SINE Alu 1 290 -23 934 186 72 0 chr3 16106513 16106706 -201930452 + AluJo SINE Alu 82 288 -24 1120 223 60 45 chr3 16106826 16107094 -201930064 + L1MEc LINE L1 745 1023 -5373 2083 101 0 0 chr3 16107094 16107391 -201929767 + AluSq SINE Alu 6 302 0 1120 223 60 45 chr3 16107391 16107503 -201929655 + L1MEc LINE L1 1023 1132 -5264 296 247 103 41 chr3 16109162 16109259 -201927899 - MIR SINE MIR -78 184 82 273 136 0 0 chr3 16109655 16109699 -201927459 - Charlie4 DNA MER1_type -54 1907 1864 2011 107 0 21 chr3 16110137 16110426 -201926732 + AluSx SINE Alu 1 283 -29 617 138 147 17 chr3 16110961 16111077 -201926081 - FLAM_C SINE Alu -2 131 1 1927 114 35 7 chr3 16111429 16111718 -201925440 + AluSx SINE Alu 1 297 -15 1884 116 40 7 chr3 16112369 16112671 -201924487 + AluSx SINE Alu 1 312 0 231 61 0 0 chr3 16112774 16112807 -201924351 + (T)n Simple_repeat Simple_repeat 1 33 0 754 145 0 0 chr3 16112897 16113014 -201924144 + FLAM_C SINE Alu 1 117 -16 2441 131 59 5 chr3 16113056 16113461 -201923697 + Tigger3(Golem) DNA MER2_type 2603 3029 0 372 266 60 96 chr3 16113753 16113952 -201923206 - MIR3 SINE MIR -10 198 7 896 9 0 0 chr3 16114284 16114389 -201922769 - AluYa5/8 SINE Alu -2 308 204 316 263 54 46 chr3 16114455 16114647 -201922511 - MLT1J1 LTR MaLR -7 443 243 * 485 252 19 0 chr3 16114642 16114749 -201922409 - MLT1J1 LTR MaLR -337 109 1 714 284 42 21 chr3 16115971 16116210 -201920948 - MIR SINE MIR -2 260 17 330 329 21 14 chr3 16116232 16116372 -201920786 + MIR3 SINE MIR 14 154 -54 1757 147 3 7 chr3 16116421 16116707 -201920451 + AluJb SINE Alu 1 285 -27 827 195 0 12 chr3 16116740 16116909 -201920249 + L1MB7 LINE L1 6007 6173 -11 245 320 80 0 chr3 16117079 16117179 -201919979 + L2 LINE L2 3206 3313 0 302 277 98 27 chr3 16117218 16117330 -201919828 + L2 LINE L2 3151 3270 -2 248 196 0 20 chr3 16117410 16117461 -201919697 - LTR67 LTR ERVL 0 557 508 330 85 73 73 chr3 16118295 16118377 -201918781 + Alu SINE Alu 220 301 0 2171 85 0 0 chr3 16118936 16119194 -201917964 - AluSq SINE Alu -29 284 27 363 273 91 15 chr3 16119229 16119419 -201917739 + MIR SINE MIR 37 239 -23 180 0 0 0 chr3 16119642 16119662 -201917496 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2284 94 0 10 chr3 16120107 16120406 -201916752 + AluSq SINE Alu 1 296 -17 1613 158 52 7 chr3 16120543 16120815 -201916343 + AluJb SINE Alu 27 310 -2 402 303 148 0 chr3 16121042 16121204 -201915954 + MIR SINE MIR 2 187 -75 1258 186 104 13 chr3 16121614 16121943 -201915215 - MER93a LTR ERV1 0 402 1 266 224 122 31 chr3 16121960 16122058 -201915100 - MARNA DNA Mariner -236 350 244 24 0 0 0 chr3 16123449 16123473 -201913685 + AT_rich Low_complexity Low_complexity 1 24 0 1374 157 4 30 chr3 16123780 16124015 -201913143 + AluJo SINE Alu 1 229 -83 1755 141 74 0 chr3 16124219 16124488 -201912670 + AluJo SINE Alu 1 289 -23 2284 104 17 0 chr3 16124987 16125285 -201911873 + AluSx SINE Alu 1 303 -9 888 211 6 0 chr3 16125300 16125466 -201911692 + AluJb SINE Alu 137 303 -9 389 206 0 41 chr3 16125567 16125664 -201911494 - L1MB8 LINE L1 -1 6177 6085 1629 173 0 0 chr3 16125793 16126042 -201911116 + AluJb SINE Alu 1 249 -63 2289 68 7 10 chr3 16126393 16126688 -201910470 + AluY SINE Alu 1 294 -17 282 95 0 0 chr3 16126697 16126739 -201910419 + (TG)n Simple_repeat Simple_repeat 1 42 0 459 212 34 25 chr3 16127505 16127623 -201909535 + MIR SINE MIR 61 179 -83 373 243 195 38 chr3 16128006 16128191 -201908967 + MIR SINE MIR 49 262 0 350 315 139 14 chr3 16128938 16129154 -201908004 + MIR SINE MIR 13 255 -7 322 282 67 26 chr3 16129175 16129370 -201907788 + MIR SINE MIR 59 261 -1 345 321 28 0 chr3 16129417 16129526 -201907632 + L2 LINE L2 3126 3237 -35 874 139 16 0 chr3 16129784 16129913 -201907245 + FLAM_C SINE Alu 1 131 -12 374 181 79 0 chr3 16130597 16130695 -201906463 + MLT1C LTR MaLR 52 169 -221 235 71 0 125 chr3 16130695 16130751 -201906407 + L1MA4 LINE L1 6241 6289 -11 1316 195 30 34 chr3 16130769 16131067 -201906091 + MLT1C LTR MaLR 171 467 0 390 296 46 7 chr3 16132036 16132188 -201904970 + MIR SINE MIR 98 255 -7 273 314 0 0 chr3 16132268 16132338 -201904820 - L2 LINE L2 -15 3298 3229 230 267 128 0 chr3 16132407 16132493 -201904665 + L2 LINE L2 3217 3313 0 995 180 0 11 chr3 16133529 16133707 -201903451 - FRAM SINE Alu -8 168 1 2058 150 3 0 chr3 16133865 16134172 -201902986 - AluSx SINE Alu -4 308 1 827 136 0 0 chr3 16135766 16135884 -201901274 - 5S rRNA rRNA -1 120 3 259 263 127 25 chr3 16136089 16136207 -201900951 + L1P LINE L1 4883 5012 -1134 1919 168 0 0 chr3 16136242 16136534 -201900624 - AluJb SINE Alu -15 297 6 239 196 0 36 chr3 16137087 16137143 -201900015 + L2 LINE L2 3234 3287 -26 21 0 0 0 chr3 16137714 16137735 -201899423 + AT_rich Low_complexity Low_complexity 1 21 0 591 108 0 0 chr3 16138017 16138100 -201899058 + AluSx SINE Alu 2 84 -229 253 286 214 0 chr3 16138198 16138324 -201898834 - MIR SINE MIR -109 153 1 301 326 299 2 chr3 16138667 16139143 -201898015 - L2 LINE L2 -23 3290 2657 1449 153 0 26 chr3 16139401 16139629 -201897529 + AluSx SINE Alu 62 283 -29 264 283 57 38 chr3 16140089 16140248 -201896910 + MIR SINE MIR 66 227 -35 186 167 0 0 chr3 16140909 16140945 -201896213 + (TCCA)n Simple_repeat Simple_repeat 2 37 0 456 86 129 0 chr3 16141040 16141133 -201896025 - Tigger7 DNA MER2_type -142 2345 2241 2483 72 13 0 chr3 16141142 16141449 -201895709 - AluY SINE Alu 0 311 1 1483 162 8 0 chr3 16141451 16141686 -201895472 - AluSg SINE Alu -15 295 59 1131 157 68 36 chr3 16142211 16142460 -201894698 - AluJo SINE Alu -55 257 1 1548 150 83 90 chr3 16142507 16142680 -201894478 + L1MB7 LINE L1 5736 5909 -275 1716 195 26 3 chr3 16142680 16143019 -201894139 - MER7A DNA MER2_type 0 346 2 1548 150 83 90 chr3 16143019 16143132 -201894026 + L1MB7 LINE L1 5909 6021 -163 2267 158 41 14 chr3 16143132 16143550 -201893608 + MSTB1 LTR MaLR 4 432 0 1548 150 83 90 chr3 16143550 16143695 -201893463 + L1MB7 LINE L1 6021 6165 -19 1416 164 12 12 chr3 16143890 16144134 -201893024 + AluJo SINE Alu 50 293 -19 2255 112 0 10 chr3 16144140 16144445 -201892713 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 16144454 16144479 -201892679 + AT_rich Low_complexity Low_complexity 1 25 0 1967 154 3 3 chr3 16144679 16144978 -201892180 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 16145329 16145357 -201891801 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 670 238 14 7 chr3 16146009 16146156 -201891002 - FAM SINE Alu -37 148 1 297 0 0 0 chr3 16148169 16148202 -201888956 + (TG)n Simple_repeat Simple_repeat 2 34 0 1815 142 39 3 chr3 16148214 16148496 -201888662 - AluSx SINE Alu -20 292 1 433 232 56 21 chr3 16149479 16149621 -201887537 - AluSg/x SINE Alu -32 278 132 523 267 9 37 chr3 16150029 16150213 -201886945 + L1ME2 LINE L1 5984 6166 0 234 0 0 0 chr3 16150446 16150472 -201886686 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2129 127 10 0 chr3 16150676 16150968 -201886190 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 16150968 16150991 -201886167 + (GA)n Simple_repeat Simple_repeat 2 24 0 479 243 7 37 chr3 16151719 16151855 -201885303 + L1MC4 LINE L1 7911 8042 0 1595 148 98 31 chr3 16151968 16152286 -201884872 - MER2 DNA MER2_type -6 339 1 322 309 79 0 chr3 16153687 16153839 -201883319 - L2 LINE L2 -5 3267 3104 1412 232 41 19 chr3 16155130 16155496 -201881662 - MLT1A2 LTR MaLR 0 374 1 233 253 138 0 chr3 16155498 16155585 -201881573 + MER103 DNA DNA 3 101 -65 432 0 0 0 chr3 16156185 16156233 -201880925 + (TG)n Simple_repeat Simple_repeat 2 49 0 672 267 80 9 chr3 16158190 16158415 -201878743 + MIR SINE MIR 3 243 -19 189 0 0 0 chr3 16159093 16159114 -201878044 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 291 250 12 0 chr3 16159920 16160000 -201877158 + MIR SINE MIR 172 252 -10 1210 268 148 54 chr3 16160187 16160401 -201876757 + L1MC4a LINE L1 5660 5853 -1955 2339 82 3 0 chr3 16160401 16160715 -201876443 + AluSp SINE Alu 1 313 0 1210 268 148 54 chr3 16160715 16160777 -201876381 + L1MC4a LINE L1 5853 5908 -1900 6470 26 4 0 chr3 16160777 16161515 -201875643 + L1PA3 LINE L1 5412 6152 -3 1210 268 148 54 chr3 16161515 16162143 -201875015 + L1MC4a LINE L1 5908 6650 -1158 928 173 113 16 chr3 16162144 16162329 -201874829 + MER3 DNA MER1_type 1 203 -6 1119 221 111 47 chr3 16162393 16162737 -201874421 + L1MC4 LINE L1 6751 7116 -926 1980 182 75 27 chr3 16162940 16163380 -201873778 + LOR1b LTR ERV1 1 461 0 1986 136 7 10 chr3 16163553 16163848 -201873310 - AluSx SINE Alu -18 294 1 1738 175 0 7 chr3 16164022 16164313 -201872845 - AluJo SINE Alu -23 289 1 24 0 0 0 chr3 16164790 16164814 -201872344 + AT_rich Low_complexity Low_complexity 1 24 0 2120 113 3 10 chr3 16165042 16165343 -201871815 - AluSx SINE Alu -13 299 1 246 242 263 0 chr3 16165402 16165501 -201871657 - MIR SINE MIR -19 243 119 448 259 28 99 chr3 16165644 16165856 -201871302 - MIR SINE MIR -33 229 33 283 237 32 43 chr3 16166691 16166784 -201870374 - MIR SINE MIR -61 147 56 274 318 81 14 chr3 16169747 16169895 -201867263 - MIR3 SINE MIR -7 201 44 429 257 64 47 chr3 16170133 16170304 -201866854 + MIR3 SINE MIR 33 206 -2 1135 180 81 25 chr3 16171375 16171495 -201865663 + L1MB8 LINE L1 5258 5370 -814 2220 116 48 22 chr3 16171495 16171850 -201865308 - THE1B LTR MaLR 0 364 1 1135 180 81 25 chr3 16171850 16172013 -201865145 + L1MB8 LINE L1 5370 5557 -627 1690 111 6 102 chr3 16172016 16172331 -201864827 + LTR12 LTR ERV1 1 285 -429 316 234 64 0 chr3 16172332 16172426 -201864732 + LTR30 LTR ERV1 553 652 -70 768 71 0 0 chr3 16172426 16172524 -201864634 + LTR12 LTR ERV1 617 714 0 2881 185 27 12 chr3 16172536 16173132 -201864026 + L1MB8 LINE L1 5569 6173 -5 370 256 68 8 chr3 16174205 16174338 -201862820 + MER104 DNA Tc2 1 141 -39 1970 111 0 20 chr3 16174391 16174689 -201862469 - AluSx SINE Alu -20 292 1 343 351 8 23 chr3 16176446 16176577 -201860581 - MIR SINE MIR -61 147 19 242 266 0 16 chr3 16176615 16176679 -201860479 + GA-rich Low_complexity Low_complexity 1 63 0 1459 227 45 29 chr3 16176683 16177062 -201860096 + MLT1B LTR MaLR 3 387 -3 208 330 22 22 chr3 16177799 16177890 -201859268 - L2 LINE L2 -45 3227 3137 219 390 34 0 chr3 16180304 16180422 -201856736 - MIR SINE MIR -3 259 138 1627 193 3 0 chr3 16180441 16180736 -201856422 - AluJb SINE Alu -16 296 1 183 298 8 105 chr3 16180891 16181015 -201856143 + L2 LINE L2 3202 3313 0 188 65 0 32 chr3 16181099 16181130 -201856028 + (GGA)n Simple_repeat Simple_repeat 1 30 0 350 268 0 12 chr3 16181191 16181273 -201855885 + MIR SINE MIR 176 256 -6 1777 154 30 3 chr3 16181288 16181586 -201855572 - AluJb SINE Alu -6 306 1 207 319 66 0 chr3 16181973 16182064 -201855094 + MIR SINE MIR 27 123 -139 1879 138 0 0 chr3 16182176 16182458 -201854700 - AluSx SINE Alu -10 302 21 2270 81 0 3 chr3 16184330 16184626 -201852532 - AluSg SINE Alu -11 299 5 1966 127 21 0 chr3 16185776 16186059 -201851099 + AluSx SINE Alu 1 289 -23 252 89 0 0 chr3 16186065 16186110 -201851048 - LTR66 LTR ERVL -172 438 394 234 91 0 0 chr3 16186110 16186143 -201851015 + (CA)n Simple_repeat Simple_repeat 2 34 0 623 260 101 56 chr3 16186195 16186711 -201850447 + L1M4 LINE L1 3876 4414 -1732 1855 150 0 7 chr3 16186760 16187060 -201850098 - AluJb SINE Alu -14 298 1 2165 104 0 0 chr3 16187315 16187613 -201849545 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr3 16187700 16187721 -201849437 + (A)n Simple_repeat Simple_repeat 1 21 0 1735 144 22 0 chr3 16187839 16188109 -201849049 + AluSx SINE Alu 1 276 -36 279 0 0 0 chr3 16188111 16188142 -201849016 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1564 158 0 90 chr3 16188360 16188695 -201848463 - AluJo SINE Alu -5 307 3 447 275 70 7 chr3 16190153 16190295 -201846863 - MIR SINE MIR -80 182 32 569 296 17 17 chr3 16191028 16191200 -201845958 + MIR SINE MIR 16 187 -75 2432 70 0 0 chr3 16191322 16191624 -201845534 + AluY SINE Alu 1 302 -9 182 252 0 171 chr3 16191999 16192122 -201845036 - MIR SINE MIR -42 220 119 181 191 32 117 chr3 16192746 16192840 -201844318 - MIR SINE MIR -67 195 110 470 242 16 23 chr3 16192919 16193047 -201844111 + MIR SINE MIR 8 134 -128 2440 61 0 6 chr3 16193313 16193625 -201843533 + AluY SINE Alu 1 310 -1 234 132 0 0 chr3 16193848 16193886 -201843272 + MIR SINE MIR 124 161 -101 268 341 0 0 chr3 16194209 16194300 -201842858 - MIR3 SINE MIR -14 194 104 2144 105 0 7 chr3 16194596 16194900 -201842258 - AluSc SINE Alu -7 302 1 271 327 82 64 chr3 16195367 16195697 -201841461 + L2 LINE L2 2859 3194 -78 394 167 83 0 chr3 16195701 16195785 -201841373 - L1MC1 LINE L1 -293 6040 5950 1235 120 5 0 chr3 16195795 16195979 -201841179 - AluSg/x SINE Alu 0 312 128 3178 116 66 51 chr3 16195980 16196072 -201841086 - L1MC1 LINE L1 -378 5955 5866 1965 137 0 0 chr3 16196072 16196364 -201840794 - AluSx SINE Alu -20 292 1 3178 116 66 51 chr3 16196364 16196818 -201840340 - L1MC1 LINE L1 -467 5866 5397 1172 22 0 0 chr3 16196818 16196956 -201840202 - L1PA4 LINE L1 -3 6152 6015 3178 116 66 51 chr3 16196956 16197011 -201840147 - L1MC1 LINE L1 -936 5397 5344 208 314 0 0 chr3 16197036 16197087 -201840071 + L2 LINE L2 3246 3296 -17 21 36 0 0 chr3 16197110 16197138 -201840020 + AT_rich Low_complexity Low_complexity 1 28 0 1672 97 0 0 chr3 16197622 16197848 -201839310 + AluSx SINE Alu 62 287 -25 210 143 0 0 chr3 16197849 16197884 -201839274 + (CA)n Simple_repeat Simple_repeat 2 36 0 2184 104 0 0 chr3 16198038 16198336 -201838822 + AluSg SINE Alu 1 298 -12 540 305 56 19 chr3 16198889 16199102 -201838056 + MIR SINE MIR 1 221 -41 549 196 0 83 chr3 16199104 16199237 -201837921 + AluJb SINE Alu 103 224 -88 184 185 0 0 chr3 16199278 16199305 -201837853 + L2 LINE L2 3262 3288 -25 5008 117 51 73 chr3 16199369 16200382 -201836776 + pTR5 LTR ERV1 743 2025 -413 350 224 31 20 chr3 16200382 16200480 -201836678 + LTR30 LTR ERV1 544 642 -80 3578 142 264 23 chr3 16200483 16202302 -201834856 + pTR5 LTR ERV1 172 2606 0 1301 180 43 29 chr3 16204426 16204704 -201832454 + AluJo SINE Alu 1 282 -30 1321 71 157 0 chr3 16204736 16204933 -201832225 - MER30 DNA MER1_type 0 230 3 239 167 51 90 chr3 16205117 16205195 -201831963 + MLT1L LTR MaLR 1 75 -540 471 284 108 56 chr3 16205231 16205455 -201831703 + MLT1J LTR MaLR 75 323 -188 1507 196 50 79 chr3 16205455 16205877 -201831281 + Charlie4a DNA MER1_type 3 409 -1552 2095 113 0 3 chr3 16205877 16206178 -201830980 - AluSx SINE Alu -12 300 1 1507 196 50 79 chr3 16206178 16206275 -201830883 + Charlie4a DNA MER1_type 409 507 -1 471 284 108 56 chr3 16206275 16206374 -201830784 + MLT1J LTR MaLR 323 415 -96 228 167 0 0 chr3 16206374 16206410 -201830748 + MER3 DNA MER1_type 1 36 -173 1746 122 0 45 chr3 16206413 16206699 -201830459 - AluSx SINE Alu -8 304 32 802 200 82 0 chr3 16206733 16206903 -201830255 + MER3 DNA MER1_type 26 209 0 307 246 79 26 chr3 16206903 16207001 -201830157 + MLT1J LTR MaLR 408 511 0 193 250 31 47 chr3 16207865 16207929 -201829229 + L2 LINE L2 2948 3010 -262 5239 257 83 52 chr3 16207990 16209387 -201827771 - HAL1 LINE L1 -13 2494 1142 2347 76 3 0 chr3 16209387 16209690 -201827468 - AluSg SINE Alu -6 304 1 5239 257 83 52 chr3 16209690 16210495 -201826663 - HAL1 LINE L1 -1365 1142 212 3953 18 0 0 chr3 16210495 16210942 -201826216 + L1PA3 LINE L1 5708 6154 -1 5239 257 83 52 chr3 16210942 16211094 -201826064 - HAL1 LINE L1 -2295 212 66 224 219 0 0 chr3 16211108 16211149 -201826009 + (TATG)n Simple_repeat Simple_repeat 4 44 0 2092 82 4 0 chr3 16211195 16211474 -201825684 + AluSx SINE Alu 14 293 -19 284 319 0 0 chr3 16211474 16211565 -201825593 - L1MC4 LINE L1 -164 7878 7788 * 306 250 11 89 chr3 16211534 16211714 -201825444 - L1MC4 LINE L1 -48 7812 7595 202 310 17 0 chr3 16211791 16211849 -201825309 - MIR SINE MIR 0 262 204 1756 170 7 0 chr3 16211917 16212211 -201824947 - AluJb SINE Alu -16 296 1 1849 101 61 7 chr3 16212260 16212538 -201824620 + AluSc SINE Alu 6 298 -11 365 375 7 0 chr3 16213035 16213179 -201823979 - L3 LINE CR1 -1 1576 1432 2628 186 43 36 chr3 16213339 16213410 -201823748 + MER119 DNA MER1_type 1 70 -513 2260 97 0 3 chr3 16213410 16213721 -201823437 - AluSq SINE Alu -3 310 1 2628 186 43 36 chr3 16213721 16214225 -201822933 + MER119 DNA MER1_type 70 580 -3 182 344 16 16 chr3 16214599 16214721 -201822437 - L2 LINE L2 -569 2745 2624 239 95 48 0 chr3 16214998 16215040 -201822118 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1914 116 41 3 chr3 16215624 16215788 -201821370 - AluSx SINE Alu -8 304 123 333 0 0 0 chr3 16215788 16215825 -201821333 + (TA)n Simple_repeat Simple_repeat 2 38 0 1914 116 41 3 chr3 16215825 16215953 -201821205 - AluSx SINE Alu -189 123 1 2009 87 33 0 chr3 16216032 16216336 -201820822 + AluSx SINE Alu 1 313 0 212 158 0 26 chr3 16216741 16216779 -201820379 + GA-rich Low_complexity Low_complexity 4 40 0 283 250 23 57 chr3 16217107 16217195 -201819963 + MIR SINE MIR 99 183 -79 447 285 63 105 chr3 16218042 16218094 -201819064 - L3 LINE CR1 -5 1572 1519 2368 81 0 20 chr3 16218094 16218392 -201818766 - AluSg SINE Alu -18 292 1 447 285 63 105 chr3 16218392 16218664 -201818494 - L3 LINE CR1 -58 1519 1268 3321 102 37 6 chr3 16218664 16219146 -201818012 + LOR1a LTR ERV1 1 497 0 447 285 63 105 chr3 16219146 16219250 -201817908 - L3 LINE CR1 -309 1268 1161 2136 189 173 94 chr3 16219587 16220554 -201816604 + LTR28 LTR ERV1 8 983 -37 752 196 20 33 chr3 16220538 16220691 -201816467 + LTR28 LTR ERV1 865 1015 -5 * 29843 44 36 20 chr3 16220693 16224515 -201812643 + L1P LINE L1 1 3881 -2265 1846 158 37 27 chr3 16224888 16225373 -201811785 + SVA Other Other 393 741 -782 1100 291 96 42 chr3 16228126 16228752 -201808406 - L1MC4 LINE L1 -1 8041 7382 239 186 0 0 chr3 16229083 16229126 -201808032 + L2 LINE L2 3224 3266 -6 351 113 0 0 chr3 16230136 16230189 -201806969 + L1MB8 LINE L1 6121 6173 -5 458 167 19 19 chr3 16230190 16230298 -201806860 - Charlie1 DNA MER1_type -60 2701 2594 215 341 38 8 chr3 16230386 16230518 -201806640 - L2 LINE L2 -255 3017 2882 616 270 49 10 chr3 16233320 16233524 -201803634 - MIR SINE MIR -44 218 7 4716 157 54 6 chr3 16234390 16235331 -201801827 - L1MB7 LINE L1 -8 6176 5193 998 224 30 25 chr3 16236534 16236771 -201800387 + MER8 DNA MER2_type 2 239 0 2114 122 14 3 chr3 16236971 16237266 -201799892 - AluJb SINE Alu -12 300 3 276 340 10 10 chr3 16237318 16237418 -201799740 + MER5A DNA MER1_type 1 100 -89 1567 167 17 6 chr3 16238957 16239301 -201797857 + L1MB8 LINE L1 5768 6177 -1 355 264 80 25 chr3 16240223 16240386 -201796772 + MARNA DNA Mariner 70 241 -345 270 0 0 0 chr3 16240428 16240458 -201796700 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr3 16240457 16240477 -201796681 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2253 93 0 53 chr3 16240524 16240845 -201796313 + AluSq SINE Alu 3 306 -7 971 195 62 44 chr3 16241113 16241333 -201795825 + L1MA6 LINE L1 6024 6251 -49 2355 107 3 0 chr3 16241333 16241643 -201795515 + AluSp SINE Alu 1 311 -2 971 195 62 44 chr3 16241643 16241694 -201795464 + L1MA6 LINE L1 6251 6300 0 2511 69 0 0 chr3 16241765 16242069 -201795089 + AluY SINE Alu 1 304 -7 1950 77 59 25 chr3 16242711 16242997 -201794161 + AluSx SINE Alu 11 306 -6 974 194 88 150 chr3 16243475 16243589 -201793569 + L1ME3A LINE L1 5412 5532 -630 2309 99 0 3 chr3 16243589 16243901 -201793257 + AluSq SINE Alu 1 311 -2 974 194 88 150 chr3 16243901 16244506 -201792652 + L1ME3A LINE L1 5532 6067 -95 1345 199 84 47 chr3 16244543 16244946 -201792212 + MER95 LTR ERV 14 431 0 1852 136 37 0 chr3 16245267 16245565 -201791593 + AluSx SINE Alu 1 308 0 523 251 41 23 chr3 16245941 16246112 -201791046 + L2 LINE L2 3125 3298 -15 2411 80 0 10 chr3 16246612 16246924 -201790234 + AluSc SINE Alu 1 309 0 499 350 68 23 chr3 16247235 16247764 -201789394 + L2 LINE L2 2140 2692 -622 1998 133 20 0 chr3 16247904 16248197 -201788961 - AluSx SINE Alu -13 299 1 201 345 43 7 chr3 16248275 16248414 -201788744 - L2 LINE L2 -1365 1949 1806 202 216 0 0 chr3 16251741 16251778 -201785380 + CT-rich Low_complexity Low_complexity 2 38 0 2240 100 0 10 chr3 16252816 16253116 -201784042 + AluSx SINE Alu 1 297 -15 231 288 38 12 chr3 16253235 16253315 -201783843 + MIR3 SINE MIR 105 186 -22 310 267 86 26 chr3 16253423 16253539 -201783619 - L2 LINE L2 -5 3267 3145 2326 99 3 0 chr3 16254061 16254364 -201782794 + AluSq SINE Alu 1 304 -9 191 277 76 42 chr3 16257625 16257744 -201779414 - MIR SINE MIR -76 186 64 21 0 0 0 chr3 16257774 16257795 -201779363 + AT_rich Low_complexity Low_complexity 1 21 0 2163 120 40 0 chr3 16257801 16258101 -201779057 + AluSx SINE Alu 1 312 0 182 259 121 0 chr3 16258308 16258366 -201778792 + L2 LINE L2 3207 3271 -1 27 62 0 0 chr3 16258455 16258503 -201778655 + AT_rich Low_complexity Low_complexity 1 48 0 2736 16 0 23 chr3 16258534 16258844 -201778314 + AluYb8 SINE Alu 1 303 -15 2347 109 0 0 chr3 16258917 16259221 -201777937 + AluSx SINE Alu 3 306 -6 641 167 125 0 chr3 16259622 16259766 -201777392 + MER5B DNA MER1_type 17 178 0 541 233 177 19 chr3 16260069 16260340 -201776818 + MER5C DNA MER1_type 1 314 -10 1324 170 8 13 chr3 16260658 16260893 -201776265 - MER46A DNA MER2_type 0 236 3 204 209 0 0 chr3 16260991 16261034 -201776124 + L2 LINE L2 3266 3308 -5 664 235 103 91 chr3 16261892 16262637 -201774521 + L1ME4a LINE L1 5267 6024 -97 522 0 0 0 chr3 16263121 16263179 -201773979 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1648 157 46 29 chr3 16263179 16263460 -201773698 - AluJb SINE Alu -26 286 1 291 28 0 0 chr3 16263944 16263980 -201773178 + (CA)n Simple_repeat Simple_repeat 2 37 0 2018 136 36 0 chr3 16264291 16264592 -201772566 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 16265454 16265477 -201771681 + AT_rich Low_complexity Low_complexity 1 23 0 2073 109 0 3 chr3 16265641 16265926 -201771232 - AluSx SINE Alu -8 304 21 1754 264 72 14 chr3 16266518 16267086 -201770072 - L1ME3A LINE L1 -161 6009 5409 838 165 90 66 chr3 16267166 16267378 -201769780 + MER20 DNA MER1_type 1 217 -2 219 284 15 15 chr3 16268311 16268378 -201768780 + MER5B DNA MER1_type 2 68 -110 330 269 21 11 chr3 16269093 16269186 -201767972 + L2 LINE L2 3179 3272 0 223 365 52 9 chr3 16270288 16270403 -201766755 + MIR SINE MIR 16 135 -73 1414 201 7 17 chr3 16271163 16271456 -201765702 - AluJo SINE Alu -22 290 1 514 254 139 86 chr3 16272295 16272701 -201764457 + MLT1K LTR MaLR 76 512 -76 2246 116 0 10 chr3 16272701 16273003 -201764155 - AluSg SINE Alu -11 299 1 514 254 139 86 chr3 16273003 16273064 -201764094 + MLT1K LTR MaLR 512 568 -20 369 240 52 31 chr3 16273930 16274026 -201763132 + MER5B DNA MER1_type 81 178 0 222 242 202 10 chr3 16274037 16274136 -201763022 - MIR SINE MIR -55 153 36 612 244 72 62 chr3 16274235 16274491 -201762667 + L1ME3A LINE L1 5341 5602 -562 5129 130 48 20 chr3 16274491 16275615 -201761543 - L1PA13 LINE L1 0 6163 4996 612 244 72 62 chr3 16275615 16275649 -201761509 + L1ME3A LINE L1 5602 5634 -530 771 195 54 19 chr3 16275672 16275885 -201761273 + MER106B DNA MER1_type 2 234 -2 531 253 154 18 chr3 16275887 16276160 -201760998 + L1ME3A LINE L1 5653 5962 -208 1855 157 3 7 chr3 16276514 16276808 -201760350 + AluJb SINE Alu 16 308 -4 1659 162 0 70 chr3 16277239 16277567 -201759591 - AluJo SINE Alu -7 305 1 208 222 153 14 chr3 16277816 16277888 -201759270 - MIR SINE MIR -83 179 98 820 179 0 8 chr3 16278085 16278219 -201758939 + AluJo SINE Alu 3 135 -177 2413 88 3 7 chr3 16278220 16278528 -201758630 + AluSx SINE Alu 1 307 -5 1985 143 3 13 chr3 16278642 16278943 -201758215 + AluSg1 SINE Alu 1 298 -11 2374 109 3 0 chr3 16279201 16279513 -201757645 + AluSq SINE Alu 1 313 0 2885 0 0 0 chr3 16279568 16279869 -201757289 + AluYa5 SINE Alu 1 301 -10 240 230 135 0 chr3 16280254 16280328 -201756830 + MIR SINE MIR 127 210 -52 2342 109 0 0 chr3 16280824 16281136 -201756022 + AluSx SINE Alu 1 312 0 589 92 0 0 chr3 16281504 16281580 -201755578 - AluS SINE Alu -236 77 2 2359 86 0 13 chr3 16281724 16282025 -201755133 + AluY SINE Alu 1 297 -14 181 29 29 57 chr3 16282266 16282301 -201754857 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 480 18 0 0 chr3 16282914 16282971 -201754187 + (TG)n Simple_repeat Simple_repeat 2 58 0 608 264 63 116 chr3 16283877 16284335 -201752823 + MLT1K LTR MaLR 151 584 -4 396 0 0 0 chr3 16286050 16286094 -201751064 + (TG)n Simple_repeat Simple_repeat 2 45 0 235 241 54 108 chr3 16286590 16286756 -201750402 + MIR SINE MIR 106 262 0 533 287 68 93 chr3 16286861 16287335 -201749823 + L2 LINE L2 2637 3117 -196 1784 170 0 29 chr3 16287335 16287641 -201749517 - AluJo SINE Alu -10 302 6 533 287 68 93 chr3 16287641 16287817 -201749341 + L2 LINE L2 3117 3296 -17 324 279 36 21 chr3 16288456 16288596 -201748562 + MIR SINE MIR 56 197 -65 1110 294 104 19 chr3 16289422 16289884 -201747274 + MLT1K LTR MaLR 88 588 0 2176 117 24 0 chr3 16289926 16290224 -201746934 + AluSx SINE Alu 1 305 -7 323 326 54 0 chr3 16290484 16290576 -201746582 - L2 LINE L2 -20 3252 3156 278 252 62 41 chr3 16291294 16291437 -201745721 + MIR SINE MIR 101 247 -15 1459 196 101 6 chr3 16291438 16291755 -201745403 + MER7A DNA MER2_type 1 345 -1 2043 137 3 13 chr3 16291956 16292256 -201744902 - AluSx SINE Alu -15 297 1 2402 95 3 0 chr3 16292487 16292792 -201744366 - AluSp SINE Alu -7 306 1 421 309 37 31 chr3 16294090 16294281 -201742877 - L2 LINE L2 -22 3291 3100 2076 114 4 0 chr3 16294285 16294589 -201742569 + AluSx SINE Alu 1 305 0 464 242 87 13 chr3 16294598 16294747 -201742411 - MIR SINE MIR -102 160 1 2218 105 23 3 chr3 16294808 16295112 -201742046 - AluSq SINE Alu -3 310 1 1594 145 16 76 chr3 16296177 16296480 -201740678 - AluJb SINE Alu -10 302 18 2268 77 39 0 chr3 16296500 16296786 -201740372 - AluY SINE Alu -14 297 1 252 0 0 0 chr3 16296846 16296874 -201740284 + (CA)n Simple_repeat Simple_repeat 2 29 0 590 312 46 14 chr3 16296991 16297209 -201739949 - MIR SINE MIR -12 250 26 2070 133 0 17 chr3 16297572 16297874 -201739284 - AluJb SINE Alu -15 297 1 241 143 48 0 chr3 16298353 16298395 -201738763 + MLT1K LTR MaLR 537 580 -8 2137 116 3 0 chr3 16298782 16299117 -201738041 + AluSp SINE Alu 1 336 0 1329 242 44 61 chr3 16299153 16299628 -201737530 + MER74A LTR ERVL 22 488 -70 305 240 52 10 chr3 16299544 16299640 -201737518 - MER88 LTR ERVL -286 178 79 * 2408 76 0 16 chr3 16299910 16300214 -201736944 - AluY SINE Alu -12 299 1 208 296 56 0 chr3 16300219 16300290 -201736868 + MIR3 SINE MIR 127 201 -7 380 279 82 33 chr3 16301448 16301631 -201735527 - MER117 DNA MER1_type 0 197 6 238 227 120 0 chr3 16302020 16302095 -201735063 + MIR SINE MIR 155 238 -24 21 0 0 0 chr3 16302768 16302789 -201734369 + AT_rich Low_complexity Low_complexity 1 21 0 1889 158 40 0 chr3 16302869 16303192 -201733966 - MER1B DNA MER1_type 0 337 2 339 286 13 108 chr3 16303273 16303397 -201733761 - MIR3 SINE MIR -41 167 33 2301 68 0 0 chr3 16303397 16303675 -201733483 + AluY SINE Alu 1 278 -33 180 0 0 0 chr3 16303675 16303695 -201733463 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 339 286 13 108 chr3 16303695 16303726 -201733432 - MIR3 SINE MIR -173 35 22 310 226 57 81 chr3 16303995 16304119 -201733039 - L2 LINE L2 -2 3270 3150 238 294 141 29 chr3 16304119 16304289 -201732869 - MER117 DNA MER1_type -7 190 2 2525 188 32 28 chr3 16305426 16305994 -201731164 + L1MB8 LINE L1 5607 6176 -2 482 200 0 0 chr3 16307063 16307143 -201730015 + MER3 DNA MER1_type 2 81 -128 238 270 0 16 chr3 16307178 16307241 -201729917 - L2 LINE L2 -4 3268 3207 797 294 83 40 chr3 16307266 16307738 -201729420 - MLT1K LTR MaLR -6 582 91 1324 140 32 77 chr3 16309422 16309551 -201727607 - L1MB7 LINE L1 0 6184 6051 2252 126 0 3 chr3 16309551 16309861 -201727297 - AluSx SINE Alu -3 309 1 1324 140 32 77 chr3 16309861 16310016 -201727142 - L1MB7 LINE L1 -133 6051 5913 420 82 0 0 chr3 16310030 16310091 -201727067 + (TG)n Simple_repeat Simple_repeat 2 62 0 1770 141 8 0 chr3 16310481 16310744 -201726414 + AluSx SINE Alu 35 299 -13 193 317 37 0 chr3 16311558 16311640 -201725518 + L3 LINE CR1 1209 1293 -284 590 250 220 0 chr3 16311674 16311874 -201725284 + MIR SINE MIR 1 244 -18 1058 159 12 12 chr3 16312566 16312736 -201724422 - FRAM SINE Alu -10 166 1 1696 182 40 3 chr3 16313918 16314242 -201722916 - MER1B DNA MER1_type 0 337 2 347 293 32 32 chr3 16314323 16314446 -201722712 - MIR3 SINE MIR -41 167 45 2209 82 0 0 chr3 16314447 16314726 -201722432 + AluY SINE Alu 1 279 -32 477 281 74 48 chr3 16314933 16315164 -201721994 - L2 LINE L2 -779 2535 2299 313 342 80 21 chr3 16315578 16315765 -201721393 - MIR SINE MIR -10 252 55 1197 169 0 0 chr3 16316023 16316230 -201720928 - AluSg/x SINE Alu -2 310 104 740 169 0 0 chr3 16316361 16316485 -201720673 + AluSg/x SINE Alu 184 307 -5 1591 176 64 7 chr3 16316951 16317246 -201719912 - AluJb SINE Alu 0 312 1 1720 219 70 10 chr3 16317530 16317918 -201719240 - Tigger1 DNA MER2_type -2007 411 1 11215 53 7 50 chr3 16319392 16321134 -201716024 - L1P LINE L1 -2265 3881 2215 3543 174 79 45 chr3 16321524 16322436 -201714722 - L1MB3 LINE L1 -10 6173 5215 2378 85 13 0 chr3 16322436 16322741 -201714417 + AluSc SINE Alu 1 309 0 3543 174 79 45 chr3 16322741 16322905 -201714253 - L1MB3 LINE L1 -968 5215 5058 416 109 118 8 chr3 16323048 16323167 -201713991 - THE1B-int LTR MaLR -1448 132 1 2064 155 25 19 chr3 16323167 16323529 -201713629 - THE1B LTR MaLR 0 364 1 276 152 22 0 chr3 16323529 16323575 -201713583 - Alu SINE Alu -253 47 1 3013 222 27 20 chr3 16323576 16323837 -201713321 - L1M4 LINE L1 -750 5396 5138 2058 173 34 29 chr3 16323837 16324253 -201712905 + MER47B DNA MER2_type 1 418 0 3013 222 27 20 chr3 16324253 16324875 -201712283 - L1M4 LINE L1 -1008 5138 4507 1861 196 63 68 chr3 16325560 16326194 -201710964 - L1MC4 LINE L1 -8 8034 7404 722 195 27 0 chr3 16326448 16326597 -201710561 - AluSx SINE Alu -159 153 1 1555 245 35 35 chr3 16326632 16327167 -201709991 - L1M4 LINE L1 -1843 4303 3769 2430 154 61 11 chr3 16327167 16327627 -201709531 - Tigger3b DNA MER2_type 0 1231 749 309 232 26 15 chr3 16327892 16327984 -201709174 - MER5A DNA MER1_type -73 116 14 399 127 0 0 chr3 16328574 16328637 -201708521 + (CA)n Simple_repeat Simple_repeat 1 63 0 408 260 99 28 chr3 16328801 16328982 -201708176 + L1ME1 LINE L1 5968 6161 -5 180 0 0 0 chr3 16330288 16330308 -201706850 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 242 308 58 10 chr3 16330981 16331085 -201706073 + MIR3 SINE MIR 54 162 -46 647 232 100 0 chr3 16331424 16331482 -201705676 - L1MC4 LINE L1 -1481 6561 6510 1730 99 0 21 chr3 16331482 16331724 -201705434 - AluSg SINE Alu -73 237 1 647 232 100 0 chr3 16331724 16331855 -201705303 - L1MC4 LINE L1 -1532 6510 6353 646 206 19 26 chr3 16331860 16332015 -201705143 - L1ME2 LINE L1 -13 6151 5998 1235 176 59 29 chr3 16332654 16332926 -201704232 + AluJb SINE Alu 1 280 -32 1398 127 100 27 chr3 16333522 16333822 -201703336 - THE1C LTR MaLR -53 322 1 2062 127 0 7 chr3 16334028 16334328 -201702830 + AluSx SINE Alu 1 298 -14 868 161 75 11 chr3 16335327 16335513 -201701645 - Tigger1 DNA MER2_type 0 2418 2221 1943 160 61 40 chr3 16336424 16336599 -201700559 - L1MB8 LINE L1 0 6178 6004 1698 191 32 91 chr3 16336599 16336977 -201700181 - L1MC4 LINE L1 -530 5654 5255 332 167 0 0 chr3 16336977 16337031 -201700127 - MER66A LTR ERV1 -138 340 287 1698 191 32 91 chr3 16337031 16337425 -201699733 - L1MC4 LINE L1 -929 5255 5281 738 197 0 0 chr3 16337425 16337557 -201699601 - FLAM_A SINE Alu -1 132 1 1698 191 32 91 chr3 16337557 16337712 -201699446 - L1MC4 LINE L1 -902 5282 5119 185 206 88 29 chr3 16337754 16337822 -201699336 - MIR SINE MIR -109 153 82 273 278 56 0 chr3 16338122 16338212 -201698946 - MARNA DNA Mariner -242 344 250 890 132 44 0 chr3 16338719 16338878 -201698280 + MER41E LTR ERV1 10 175 -337 271 137 59 0 chr3 16338877 16338928 -201698230 + AluJb SINE Alu 79 132 -170 * 21 71 0 0 chr3 16339016 16339058 -201698100 + AT_rich Low_complexity Low_complexity 1 42 0 289 289 0 0 chr3 16339384 16339488 -201697670 - L1MB8 LINE L1 -3 6175 6072 269 185 77 0 chr3 16339500 16339565 -201697593 - L2 LINE L2 -1422 1892 1823 2078 123 3 10 chr3 16340385 16340694 -201696464 - AluSx SINE Alu -5 307 1 548 273 59 84 chr3 16340717 16340875 -201696283 - L1M4 LINE L1 -5772 770 623 2706 94 11 0 chr3 16340875 16341235 -201695923 - THE1B LTR MaLR 0 364 1 548 273 59 84 chr3 16341235 16341398 -201695760 - L1M4 LINE L1 -5919 623 457 2024 100 0 0 chr3 16341671 16341931 -201695227 - AluSc SINE Alu -49 260 1 389 287 119 96 chr3 16342062 16342456 -201694702 - L2 LINE L2 0 3272 2870 221 264 53 125 chr3 16342651 16342859 -201694299 + MIR3 SINE MIR 8 200 -8 215 259 148 0 chr3 16343518 16343599 -201693559 + MIR SINE MIR 59 151 -111 2136 99 0 0 chr3 16344290 16344562 -201692596 + AluY SINE Alu 1 272 -39 325 266 107 17 chr3 16345045 16345222 -201691936 - L1MEc LINE L1 -3642 2573 2381 240 203 17 0 chr3 16345373 16345432 -201691726 - L1MEc LINE L1 -4118 2278 2219 1871 117 0 18 chr3 16345680 16345954 -201691204 - AluSx SINE Alu 0 312 44 1721 171 39 3 chr3 16346041 16346327 -201690831 - AluJo SINE Alu -16 296 1 2009 139 3 13 chr3 16346585 16346886 -201690272 - AluSg1 SINE Alu -11 298 1 2413 87 3 7 chr3 16347000 16347310 -201689848 - AluSx SINE Alu -3 309 1 835 179 0 8 chr3 16347311 16347445 -201689713 - AluJo SINE Alu -177 135 3 247 213 147 13 chr3 16347639 16347714 -201689444 + MIR SINE MIR 95 179 -83 963 186 16 11 chr3 16348839 16349027 -201688131 - MER5A DNA MER1_type 0 189 1 452 254 33 50 chr3 16349483 16349664 -201687494 + Charlie8 DNA MER1_type 97 274 -2143 2055 123 24 0 chr3 16350205 16350497 -201686661 + AluSx SINE Alu 2 300 -12 242 54 0 27 chr3 16350497 16350534 -201686624 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 1994 155 0 0 chr3 16350714 16351010 -201686148 - AluSx SINE Alu -16 296 1 561 196 0 0 chr3 16351235 16351327 -201685831 - FRAM SINE Alu -40 136 45 641 191 203 59 chr3 16351463 16351699 -201685459 - LOR1b LTR ERV1 -191 270 1 4495 186 52 97 chr3 16351699 16353284 -201683874 - L1 LINE L1 -1252 4894 3382 216 0 0 0 chr3 16353351 16353375 -201683783 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1456 141 70 21 chr3 16353706 16353990 -201683168 + L1MB7 LINE L1 5838 6135 -49 1881 116 4 4 chr3 16354031 16354289 -201682869 - AluSx SINE Alu -54 258 1 293 89 36 0 chr3 16354289 16354345 -201682813 + L1MB7 LINE L1 6127 6184 0 321 322 116 63 chr3 16354450 16354785 -201682373 + L2 LINE L2 2904 3256 -16 27 29 0 0 chr3 16355068 16355102 -201682056 + AT_rich Low_complexity Low_complexity 1 34 0 2036 135 10 3 chr3 16355439 16355742 -201681416 - AluSx SINE Alu -7 305 1 473 302 40 36 chr3 16355797 16355902 -201681256 - Charlie8 DNA MER1_type -117 224 121 2331 86 0 0 chr3 16355902 16356194 -201680964 - AluSx SINE Alu -20 292 1 473 302 40 36 chr3 16356194 16356310 -201680848 - Charlie8 DNA MER1_type -220 121 2 1610 226 115 20 chr3 16357419 16358026 -201679132 + L1ME3A LINE L1 5421 6170 0 283 304 36 9 chr3 16358307 16358419 -201678739 + L1MC4a LINE L1 5600 5714 -2094 1762 170 35 7 chr3 16358419 16358707 -201678451 + AluJo SINE Alu 1 296 -16 320 302 26 69 chr3 16358707 16358896 -201678262 + L1MC4a LINE L1 5794 5974 -1834 74 23 0 0 chr3 16359016 16359104 -201678054 + AT_rich Low_complexity Low_complexity 1 88 0 657 175 18 0 chr3 16359187 16359301 -201677857 - AluJb SINE Alu -12 300 185 38 96 0 0 chr3 16359301 16359416 -201677742 + AT_rich Low_complexity Low_complexity 1 115 0 12589 118 43 9 chr3 16360209 16360624 -201676534 + Tigger1 DNA MER2_type 63 462 -1956 2356 101 0 19 chr3 16360624 16360942 -201676216 + AluSx SINE Alu 1 312 0 12589 118 43 9 chr3 16360942 16362623 -201674535 + Tigger1 DNA MER2_type 462 2230 -188 2040 86 4 0 chr3 16362625 16362882 -201674276 + AluY SINE Alu 1 258 -53 35 0 0 0 chr3 16362982 16363017 -201674141 + AT_rich Low_complexity Low_complexity 1 35 0 3698 236 70 24 chr3 16363023 16364698 -201672460 + L1MCa LINE L1 2309 4050 -2376 3187 123 97 19 chr3 16364698 16365316 -201671842 + Tigger3b DNA MER2_type 1 666 -565 198 103 0 0 chr3 16365519 16365548 -201671610 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 225 0 100 0 chr3 16366441 16366481 -201670677 + T-rich Low_complexity Low_complexity 2 45 0 316 248 89 10 chr3 16367934 16368035 -201669123 - MIR SINE MIR -88 174 66 325 264 0 0 chr3 16369184 16369256 -201667902 + MARNA DNA Mariner 90 161 -425 21 0 0 0 chr3 16369485 16369506 -201667652 + AT_rich Low_complexity Low_complexity 1 21 0 1258 124 43 74 chr3 16369697 16370020 -201667138 - AluSq SINE Alu 0 313 1 2524 46 0 16 chr3 16370259 16370564 -201666594 + AluYa5 SINE Alu 1 300 -11 604 256 63 43 chr3 16370685 16370986 -201666172 + L1M4 LINE L1 2636 2942 -3204 2067 30 8 11 chr3 16371094 16371358 -201665800 - L1HS LINE L1 -185 5970 5708 1419 287 116 29 chr3 16371368 16372023 -201665135 + HAL1 LINE L1 200 911 -1596 2404 88 3 0 chr3 16372163 16372460 -201664698 + AluSg SINE Alu 1 298 -12 358 297 62 20 chr3 16373013 16373208 -201663950 + MIR SINE MIR 1 203 -59 548 196 0 83 chr3 16373228 16373361 -201663797 + AluJb SINE Alu 103 224 -88 4894 116 51 73 chr3 16373493 16374505 -201662653 + pTR5 LTR ERV1 743 2025 -413 345 224 31 20 chr3 16374505 16374603 -201662555 + LTR30 LTR ERV1 544 642 -80 3537 145 264 23 chr3 16374606 16376425 -201660733 + pTR5 LTR ERV1 172 2606 0 1404 169 43 29 chr3 16378550 16378828 -201658330 + AluJo SINE Alu 1 282 -30 1339 71 152 0 chr3 16378860 16379058 -201658100 - MER30 DNA MER1_type 0 230 3 640 275 94 65 chr3 16379242 16379312 -201657846 + MLT1J LTR MaLR 1 67 -444 183 114 0 0 chr3 16379312 16379347 -201657811 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 640 275 94 65 chr3 16379347 16379579 -201657579 + MLT1J LTR MaLR 67 320 -191 1546 196 50 79 chr3 16379579 16380001 -201657157 + Charlie4a DNA MER1_type 3 409 -1552 2222 113 0 3 chr3 16380001 16380302 -201656856 - AluSx SINE Alu -12 300 1 1546 196 50 79 chr3 16380302 16380399 -201656759 + Charlie4a DNA MER1_type 409 507 -1 640 275 94 65 chr3 16380399 16380498 -201656660 + MLT1J LTR MaLR 320 415 -96 6228 37 12 12 chr3 16380691 16381415 -201655743 + SVA Other Other 663 1386 0 12838 31 11 0 chr3 16381420 16383691 -201653467 + L1PA3 LINE L1 3867 6152 -3 2055 149 10 0 chr3 16383823 16384132 -201653026 - AluSx SINE Alu 0 312 1 801 220 29 24 chr3 16385240 16385449 -201651709 + L1ME3 LINE L1 5953 6162 0 286 342 5 20 chr3 16386274 16386488 -201650670 - MIR SINE MIR -11 251 44 901 155 23 6 chr3 16386894 16387068 -201650090 - L1MB3 LINE L1 -1 6182 6006 197 292 83 0 chr3 16387073 16387145 -201650013 + L2 LINE L2 3190 3267 -5 1537 131 12 116 chr3 16387656 16387991 -201649167 - AluJo SINE Alu -2 300 1 1535 173 76 14 chr3 16388014 16388303 -201648855 - AluJo SINE Alu -3 309 3 575 202 326 16 chr3 16388687 16388880 -201648278 - L1M4 LINE L1 -6288 254 2 1727 163 29 38 chr3 16388965 16389278 -201647880 - AluJb SINE Alu -2 310 1 182 103 0 51 chr3 16389292 16389331 -201647827 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1946 140 4 0 chr3 16389358 16389636 -201647522 - AluSg SINE Alu -31 279 1 24 0 0 0 chr3 16390781 16390805 -201646353 + AT_rich Low_complexity Low_complexity 1 24 0 211 298 71 85 chr3 16394083 16394224 -201642934 - MIR SINE MIR -54 154 16 2333 104 0 7 chr3 16394531 16394840 -201642318 - AluSx SINE Alu -5 307 1 2018 107 48 10 chr3 16394924 16395213 -201641945 + AluSx SINE Alu 1 300 -12 194 232 24 49 chr3 16396232 16396314 -201640844 - MER5B DNA MER1_type -98 80 1 327 301 113 38 chr3 16396746 16396959 -201640199 - MIR SINE MIR -7 255 27 480 224 85 18 chr3 16397734 16397899 -201639259 - MIR SINE MIR -6 256 81 202 214 0 0 chr3 16398364 16398406 -201638752 + MIR SINE MIR 81 122 -140 2176 206 203 7 chr3 16399135 16399480 -201637678 - L1MB4 LINE L1 -173 6007 5731 2031 130 3 20 chr3 16399480 16399780 -201637378 + AluSg SINE Alu 1 295 -15 2176 206 203 7 chr3 16399780 16400104 -201637054 - L1MB4 LINE L1 -449 5731 5210 1459 182 29 42 chr3 16400105 16400413 -201636745 - AluJo SINE Alu -6 306 3 182 238 0 0 chr3 16400568 16400610 -201636548 + MIR SINE MIR 81 122 -140 565 163 0 0 chr3 16401327 16401419 -201635739 - AluJo SINE Alu -12 300 209 1111 118 52 0 chr3 16401420 16401573 -201635585 - AluJo SINE Alu -151 161 1 234 191 0 0 chr3 16401806 16401853 -201635305 + T-rich Low_complexity Low_complexity 1 47 0 576 273 36 43 chr3 16401926 16402179 -201634979 + L1ME3A LINE L1 5877 6127 -43 405 0 0 0 chr3 16403069 16403114 -201634044 + (CA)n Simple_repeat Simple_repeat 2 46 0 2443 83 0 3 chr3 16403847 16404148 -201633010 - AluSg SINE Alu -10 300 1 180 227 80 13 chr3 16404296 16404371 -201632787 + MIR SINE MIR 65 144 -64 452 308 56 14 chr3 16404865 16405079 -201632079 - MIR SINE MIR -14 248 26 360 200 14 0 chr3 16405632 16405702 -201631456 + MIR SINE MIR 79 149 -113 719 223 51 59 chr3 16406352 16406534 -201630624 + MIR SINE MIR 1 182 -80 2168 116 0 39 chr3 16406534 16406844 -201630314 + AluSp SINE Alu 1 298 -15 719 223 51 59 chr3 16406844 16406917 -201630241 + MIR SINE MIR 182 254 -8 758 141 76 65 chr3 16408388 16408503 -201628655 - MER53 DNA DNA -3 186 67 2377 100 0 0 chr3 16408503 16408802 -201628356 + AluSg SINE Alu 1 299 -11 758 141 76 65 chr3 16408802 16408870 -201628288 - MER53 DNA DNA -122 67 1 370 284 74 62 chr3 16409656 16409739 -201627419 - MIR SINE MIR -16 246 166 1958 155 3 7 chr3 16409739 16410049 -201627109 + AluSx SINE Alu 1 309 -3 370 284 74 62 chr3 16410049 16410208 -201626950 - MIR SINE MIR -96 166 1 361 38 57 0 chr3 16410226 16410279 -201626879 - L1MB7 LINE L1 0 6184 6129 289 139 23 0 chr3 16410299 16410342 -201626816 - AluSg/x SINE Alu -123 177 134 970 121 0 27 chr3 16410356 16410505 -201626653 - AluJb SINE Alu 0 312 168 305 293 20 0 chr3 16411407 16411506 -201625652 - MER103 DNA DNA -50 116 16 2453 87 0 0 chr3 16411959 16412268 -201624890 - AluY SINE Alu -2 309 1 754 192 0 0 chr3 16412623 16412748 -201624410 - FLAM_A SINE Alu -7 126 2 2766 114 21 5 chr3 16412886 16413314 -201623844 + L1PA13 LINE L1 5718 6152 -11 628 155 0 106 chr3 16413498 16413640 -201623518 + FLAM_A SINE Alu 13 139 -3 22 0 0 0 chr3 16413768 16413790 -201623368 + AT_rich Low_complexity Low_complexity 1 22 0 231 103 0 0 chr3 16413790 16413829 -201623329 + (GA)n Simple_repeat Simple_repeat 2 40 0 2237 86 0 4 chr3 16413830 16414109 -201623049 - AluSc SINE Alu -31 278 1 1810 138 7 21 chr3 16414313 16414627 -201622531 + AluJb SINE Alu 7 316 0 212 222 0 0 chr3 16415725 16415770 -201621388 - L2 LINE L2 -18 3295 3251 234 315 52 95 chr3 16415840 16415973 -201621185 - L2 LINE L2 -42 3230 3093 2184 122 0 7 chr3 16415973 16416276 -201620882 + AluSq SINE Alu 1 301 -12 234 315 52 95 chr3 16416276 16416469 -201620689 - L2 LINE L2 -179 3093 2918 310 350 129 17 chr3 16416498 16416909 -201620249 - L2 LINE L2 -494 2820 2364 206 371 36 18 chr3 16417836 16418057 -201619101 - L2 LINE L2 -470 2844 2620 414 221 150 0 chr3 16418499 16418639 -201618519 - MIR SINE MIR -16 246 86 2477 91 0 0 chr3 16418668 16418977 -201618181 + AluSg SINE Alu 1 309 -1 1047 91 0 0 chr3 16419418 16419550 -201617608 + AluY SINE Alu 1 132 -179 303 274 142 18 chr3 16419842 16419955 -201617203 - L2 LINE L2 -1 3271 3145 379 217 43 0 chr3 16421179 16421271 -201615887 + MER112 DNA MER1_type 158 253 -7 257 250 0 0 chr3 16421674 16421734 -201615424 - L1ME LINE L1 -453 5668 5609 1897 160 14 0 chr3 16421734 16422022 -201615136 + AluJo SINE Alu 1 292 -20 891 246 14 19 chr3 16422047 16422258 -201614900 + MER63A DNA MER1_type 1 210 0 320 233 110 0 chr3 16423086 16423159 -201613999 - MIR SINE MIR -101 107 27 24 32 0 0 chr3 16423159 16423190 -201613968 + AT_rich Low_complexity Low_complexity 1 31 0 189 293 17 0 chr3 16423680 16423738 -201613420 - MIR3 SINE MIR -39 169 111 2206 144 35 9 chr3 16423824 16424163 -201612995 + MER7A DNA MER2_type 1 346 0 2330 94 3 0 chr3 16424307 16424604 -201612554 + AluSp SINE Alu 1 298 -15 330 226 12 29 chr3 16424606 16424709 -201612449 - MIR SINE MIR -64 144 45 2424 90 0 0 chr3 16425205 16425516 -201611642 - AluY SINE Alu 0 311 1 244 245 189 47 chr3 16426038 16426144 -201611014 - L2 LINE L2 -2 3270 3150 225 303 23 80 chr3 16426321 16426496 -201610662 - MER5A DNA MER1_type -18 171 7 836 160 19 19 chr3 16426527 16426683 -201610475 + MER5B DNA MER1_type 21 176 -2 490 210 150 54 chr3 16426707 16426874 -201610284 - MER5A DNA MER1_type 0 189 7 265 205 26 77 chr3 16426995 16427073 -201610085 - MER5A DNA MER1_type -18 171 98 416 234 131 0 chr3 16427104 16427249 -201609909 - MIR SINE MIR -30 232 69 410 295 54 31 chr3 16427533 16427723 -201609435 + L1ME4a LINE L1 5701 5900 -221 1690 142 0 54 chr3 16427723 16428039 -201609119 + AluSx SINE Alu 1 299 -13 410 295 54 31 chr3 16428039 16428146 -201609012 + L1ME4a LINE L1 5900 6003 -118 865 169 96 6 chr3 16428248 16428414 -201608744 - AluJo SINE Alu -131 181 1 271 269 15 0 chr3 16428620 16428687 -201608471 + CT-rich Low_complexity Low_complexity 1 68 0 507 245 75 0 chr3 16428757 16428916 -201608242 - L1ME4a LINE L1 -215 5906 5736 260 222 74 0 chr3 16428928 16428982 -201608176 - L2 LINE L2 -71 3242 3185 1944 161 7 0 chr3 16429804 16430114 -201607044 - AluJo SINE Alu 0 312 1 180 310 0 0 chr3 16431026 16431084 -201606074 - L2 LINE L2 -2 3311 3254 715 223 88 0 chr3 16431381 16431529 -201605629 + MER5B DNA MER1_type 1 161 -17 3196 209 105 28 chr3 16431529 16432543 -201604615 - L1ME2 LINE L1 -7 6157 5052 473 279 71 77 chr3 16432782 16433122 -201604036 - L1MEc LINE L1 -6023 373 36 2390 91 0 3 chr3 16433169 16433476 -201603682 - AluSc SINE Alu -3 306 1 2341 160 78 12 chr3 16433949 16434349 -201602809 - MSTB LTR MaLR 0 426 1 2379 83 3 10 chr3 16434382 16434682 -201602476 - AluSc SINE Alu -11 298 1 348 334 121 42 chr3 16434928 16435260 -201601898 + L2 LINE L2 2914 3271 -1 6051 54 6 3 chr3 16435267 16435990 -201601168 + L1PA5 LINE L1 5429 6153 -1 360 326 105 39 chr3 16436286 16436655 -201600503 + L2 LINE L2 2800 3198 -74 183 316 0 18 chr3 16436793 16436850 -201600308 - MIR SINE MIR -119 89 34 737 176 0 22 chr3 16436900 16437036 -201600122 - FLAM_C SINE Alu 0 133 1 409 301 32 19 chr3 16437087 16437243 -201599915 + MLT1H LTR MaLR 47 204 -345 370 218 109 0 chr3 16437403 16437504 -201599654 + MLT1I LTR MaLR 273 384 -25 212 259 35 17 chr3 16437567 16437625 -201599533 + L2 LINE L2 3246 3304 -9 26 0 0 0 chr3 16438275 16438301 -201598857 + AT_rich Low_complexity Low_complexity 1 26 0 1305 194 20 28 chr3 16438301 16438554 -201598604 - AluJb SINE Alu -31 281 31 256 231 0 0 chr3 16438554 16438606 -201598552 + LTR30 LTR ERV1 1 52 -670 1753 195 215 12 chr3 16438606 16439114 -201598044 + pTR5 LTR ERV1 1395 2005 -433 333 180 82 82 chr3 16439114 16439236 -201597922 + LTR30 LTR ERV1 553 716 -78 1970 93 48 110 chr3 16439237 16439593 -201597565 + LTR12 LTR ERV1 381 714 0 477 316 15 0 chr3 16440564 16440700 -201596458 - MIR3 SINE MIR -3 205 68 1007 243 62 35 chr3 16441316 16441657 -201595501 + L1ME LINE L1 5467 5816 -305 373 225 108 1 chr3 16441672 16441779 -201595379 + FLAM_A SINE Alu 23 127 -6 273 287 167 60 chr3 16442018 16442413 -201594745 + L1MC/D LINE L1 3074 3425 -2721 2393 59 0 13 chr3 16442413 16442716 -201594442 - AluY SINE Alu -12 299 1 273 287 167 60 chr3 16442716 16442969 -201594189 + L1MC/D LINE L1 3425 3650 -2496 1753 154 3 11 chr3 16442969 16443255 -201593903 - AluJb SINE Alu -28 284 1 273 287 167 60 chr3 16443255 16444185 -201592973 + L1MC/D LINE L1 3650 4984 -1162 324 285 189 65 chr3 16444349 16444611 -201592547 + L1MC/D LINE L1 5255 5483 -2325 2259 112 3 0 chr3 16444611 16444906 -201592252 + AluSx SINE Alu 1 296 -16 324 285 189 65 chr3 16444906 16445134 -201592024 + L1MC/D LINE L1 5483 5806 -2002 2412 98 0 0 chr3 16446092 16446397 -201590761 + AluSq SINE Alu 1 305 -8 2048 98 14 4 chr3 16446480 16446756 -201590402 + AluSg SINE Alu 1 279 -31 1875 122 44 10 chr3 16447902 16448197 -201588961 + AluSx SINE Alu 1 305 -7 323 114 0 0 chr3 16448198 16448242 -201588916 + Alu SINE Alu 1 44 -264 1996 99 20 10 chr3 16448242 16448536 -201588622 + AluSg SINE Alu 1 297 -13 182 300 64 18 chr3 16448589 16448699 -201588459 + MIR SINE MIR 119 233 -29 1440 50 156 0 chr3 16448748 16448947 -201588211 - MER30 DNA MER1_type 0 230 1 2103 106 17 0 chr3 16449257 16449550 -201587608 - AluSx SINE Alu -14 298 1 2060 121 7 0 chr3 16449682 16449964 -201587194 + AluSx SINE Alu 1 284 -28 242 225 0 0 chr3 16450086 16450126 -201587032 - L2 LINE L2 -16 3256 3217 2476 66 0 7 chr3 16450176 16450480 -201586678 + AluY SINE Alu 1 302 -9 260 185 0 0 chr3 16450553 16450607 -201586551 - L1MC4 LINE L1 -1337 6705 6652 197 307 0 34 chr3 16450613 16450701 -201586457 + MIR SINE MIR 106 190 -72 30 0 0 0 chr3 16451269 16451299 -201585859 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 16451752 16451780 -201585378 + AT_rich Low_complexity Low_complexity 1 28 0 1415 276 109 12 chr3 16451815 16452428 -201584730 - L1ME3 LINE L1 -133 6029 5355 301 306 56 9 chr3 16453044 16453152 -201584006 + L2 LINE L2 3143 3255 -17 4350 198 71 21 chr3 16453552 16454589 -201582569 + L1MC3 LINE L1 6697 7785 0 656 181 0 146 chr3 16455434 16455492 -201581666 - L1MB8 LINE L1 -1 6177 6112 1736 133 58 25 chr3 16455492 16455770 -201581388 - AluJb SINE Alu -25 287 1 656 181 0 146 chr3 16455770 16455916 -201581242 - L1MB8 LINE L1 -66 6112 6003 1558 194 11 3 chr3 16456521 16456805 -201580353 + AluJb SINE Alu 1 286 -26 340 292 84 40 chr3 16457353 16457579 -201579579 - MIR SINE MIR -14 248 13 1578 136 26 22 chr3 16458227 16458500 -201578658 - L1MB7 LINE L1 -16 6168 5895 1851 137 27 23 chr3 16458800 16459099 -201578059 - AluSx SINE Alu -12 300 1 2523 64 0 0 chr3 16459489 16459786 -201577372 + AluY SINE Alu 1 297 -14 1889 144 32 0 chr3 16460243 16460527 -201576631 - AluJb SINE Alu -17 295 3 208 241 17 0 chr3 16460677 16460735 -201576423 + (TG)n Simple_repeat Simple_repeat 2 60 0 398 306 99 0 chr3 16461724 16461845 -201575313 - L2 LINE L2 -6 3266 3134 310 220 83 46 chr3 16463837 16463946 -201573212 - MIR SINE MIR -95 113 1 186 293 12 61 chr3 16465228 16465310 -201571848 + MIR3 SINE MIR 6 83 -125 1388 126 50 50 chr3 16465318 16465580 -201571578 + L1MB7 LINE L1 5910 6171 -13 366 284 11 11 chr3 16466089 16466184 -201570974 - L2 LINE L2 -8 3264 3170 2354 36 7 55 chr3 16466304 16466613 -201570545 - AluY SINE Alu -17 294 1 2520 47 3 0 chr3 16466721 16467017 -201570141 - AluY SINE Alu -13 298 2 268 259 53 117 chr3 16467129 16467376 -201569782 + MLT1J2 LTR MaLR 67 297 -153 266 163 138 12 chr3 16467398 16467478 -201569680 + MLT1J1 LTR MaLR 357 446 0 214 225 12 88 chr3 16467691 16467771 -201569387 + L2 LINE L2 3238 3311 -2 313 330 133 6 chr3 16468092 16468265 -201568893 - MIR3 SINE MIR 0 208 14 251 305 231 27 chr3 16469319 16469622 -201567536 + L2 LINE L2 1817 2057 -1257 2168 130 42 11 chr3 16469622 16469976 -201567182 - MER47A DNA MER2_type 0 366 2 251 305 231 27 chr3 16469976 16470230 -201566928 + L2 LINE L2 2057 2488 -826 270 222 159 26 chr3 16470250 16470385 -201566773 + MIR SINE MIR 83 251 -11 1762 159 0 17 chr3 16470392 16470693 -201566465 + AluSx SINE Alu 1 296 -16 1674 143 38 0 chr3 16472074 16472361 -201564797 - L1MB2 LINE L1 -1 6170 5873 1464 81 15 5 chr3 16472429 16472626 -201564532 - AluSc SINE Alu -12 297 99 622 209 44 73 chr3 16473196 16473267 -201563891 - MER46C DNA MER2_type -134 204 132 1480 197 7 7 chr3 16473267 16473546 -201563612 - AluJb SINE Alu -33 279 1 622 209 44 73 chr3 16473546 16473680 -201563478 - MER46C DNA MER2_type -206 132 5 2195 95 30 0 chr3 16474544 16474848 -201562310 + AluSq SINE Alu 1 313 0 1639 172 14 7 chr3 16475477 16475774 -201561384 - AluSg SINE Alu -11 299 1 187 268 21 155 chr3 16475776 16475918 -201561240 + MER5A DNA MER1_type 49 171 -18 216 152 0 0 chr3 16475786 16475819 -201561339 - MER5B DNA MER1_type -46 132 100 1638 116 71 15 chr3 16476084 16476376 -201560782 + AluSq SINE Alu 1 307 0 4917 55 38 16 chr3 16477890 16478891 -201558267 - MER11A LTR ERVK -87 1179 1 256 296 35 61 chr3 16478943 16479058 -201558100 - L2 LINE L2 -1 3271 3160 431 311 85 85 chr3 16479078 16479419 -201557739 - L2 LINE L2 -1 3271 2931 394 253 50 33 chr3 16479576 16479751 -201557407 + MER20B DNA MER1_type 43 213 -6 2162 93 0 32 chr3 16479817 16480130 -201557028 + AluSg SINE Alu 1 303 -7 214 383 78 23 chr3 16480303 16480431 -201556727 + L2 LINE L2 3136 3270 -2 1444 108 9 14 chr3 16480452 16480674 -201556484 - AluSg/x SINE Alu -4 308 88 664 279 123 5 chr3 16480708 16480912 -201556246 - MIR SINE MIR -15 247 20 595 259 80 22 chr3 16480926 16481150 -201556008 - L3 LINE CR1 -707 870 634 180 337 58 35 chr3 16481160 16481246 -201555912 + L2 LINE L2 3177 3264 -8 610 343 104 24 chr3 16481247 16481582 -201555576 - L3 LINE CR1 -909 668 307 445 218 53 68 chr3 16481583 16481716 -201555442 + MER91B DNA MER1_type 2 132 -58 345 284 42 0 chr3 16481731 16481826 -201555332 + MER91B DNA MER1_type 90 188 -2 2161 90 10 13 chr3 16481904 16482216 -201554942 + AluSq SINE Alu 1 311 -2 552 289 64 60 chr3 16483768 16484017 -201553141 - MIR SINE MIR -6 256 7 1994 115 20 3 chr3 16484071 16484366 -201552792 + AluSx SINE Alu 5 304 -8 1612 185 13 7 chr3 16484959 16485262 -201551896 - AluJo SINE Alu -7 305 1 2261 65 0 14 chr3 16485262 16485552 -201551606 - AluY SINE Alu -15 296 11 180 0 0 0 chr3 16485552 16485572 -201551586 + (T)n Simple_repeat Simple_repeat 1 20 0 1568 136 53 40 chr3 16485584 16485885 -201551273 - AluJb SINE Alu -7 305 1 861 199 46 23 chr3 16485911 16486127 -201551031 - L1ME3 LINE L1 -22 6140 5920 297 266 0 0 chr3 16486182 16486261 -201550897 - L1MC4 LINE L1 -1 8041 7963 1198 246 80 12 chr3 16486277 16486614 -201550544 - L1MC4 LINE L1 -329 7713 7354 1749 141 3 46 chr3 16486947 16487314 -201549844 - AluJb SINE Alu 0 353 1 716 184 8 0 chr3 16487347 16487472 -201549686 - FLAM_C SINE Alu -17 126 1 849 213 102 10 chr3 16488329 16488526 -201548632 + MER58C DNA MER1_type 1 215 0 1585 216 162 2 chr3 16489295 16489740 -201547418 - L1ME3A LINE L1 -6 6164 5649 517 202 10 0 chr3 16489789 16489888 -201547270 + FLAM_A SINE Alu 26 125 -17 1383 133 5 0 chr3 16490552 16490747 -201546411 - MLT1A1 LTR MaLR 0 365 170 1460 186 16 11 chr3 16490747 16491046 -201546112 - MLT1A1 LTR MaLR 0 365 4 372 277 117 15 chr3 16491425 16491562 -201545596 + MIR SINE MIR 71 221 -41 1869 117 42 3 chr3 16491709 16491992 -201545166 + AluSg SINE Alu 1 294 -16 273 323 184 14 chr3 16493193 16493475 -201543683 + L2 LINE L2 2648 2977 -337 799 83 19 0 chr3 16493573 16493681 -201543477 - AluSp/q SINE Alu -15 298 189 441 136 0 0 chr3 16493926 16493992 -201543166 + MER5A DNA MER1_type 12 77 -112 2277 84 0 0 chr3 16493993 16494290 -201542868 + AluY SINE Alu 3 299 -12 3983 142 65 80 chr3 16494293 16494631 -201542527 + L1MB7 LINE L1 5323 5665 -519 1833 124 14 17 chr3 16494631 16494921 -201542237 - AluJb SINE Alu -23 289 1 492 18 0 0 chr3 16494921 16494978 -201542180 + (TG)n Simple_repeat Simple_repeat 1 57 0 3983 142 65 80 chr3 16494978 16495321 -201541837 + L1MB7 LINE L1 5664 5992 -192 2236 137 0 20 chr3 16495321 16495665 -201541493 + MER1B DNA MER1_type 1 337 0 3983 142 65 80 chr3 16495665 16495846 -201541312 + L1MB7 LINE L1 5992 6174 -10 1846 147 27 0 chr3 16495861 16496154 -201541004 + AluJo SINE Alu 1 301 -11 285 218 218 0 chr3 16496180 16496258 -201540900 - MIR SINE MIR -81 127 33 2468 62 0 0 chr3 16496279 16496585 -201540573 - AluY SINE Alu -5 306 1 2266 133 96 57 chr3 16496585 16496607 -201540551 - MER41B LTR ERV1 -165 470 450 1935 145 0 10 chr3 16496607 16496918 -201540240 - AluSx SINE Alu -4 308 1 2266 133 96 57 chr3 16496918 16496983 -201540175 - MER41B LTR ERV1 -185 450 389 2141 116 0 3 chr3 16496983 16497285 -201539873 - AluSx SINE Alu -11 301 1 2266 133 96 57 chr3 16497285 16497426 -201539732 - MER41B LTR ERV1 -246 389 255 706 122 7 108 chr3 16497426 16497574 -201539584 - FLAM_C SINE Alu 0 133 1 2266 133 96 57 chr3 16497574 16497792 -201539366 - MER41B LTR ERV1 -380 255 1 728 224 20 57 chr3 16497794 16498007 -201539151 + L1ME2 LINE L1 5951 6174 -10 2137 122 0 3 chr3 16498007 16498318 -201538840 - AluSx SINE Alu -2 310 1 728 224 20 57 chr3 16498318 16498329 -201538829 + L1ME2 LINE L1 6174 6184 0 1640 191 86 19 chr3 16498817 16499188 -201537970 + MSTD LTR MaLR 1 396 0 1722 164 3 0 chr3 16499752 16499768 -201537390 - AluJb SINE Alu -12 300 286 216 0 0 0 chr3 16499768 16499792 -201537366 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 1722 164 3 0 chr3 16499792 16500074 -201537084 - AluJb SINE Alu -26 286 1 450 206 82 106 chr3 16500412 16500582 -201536576 + MIR SINE MIR 87 252 -10 188 338 14 27 chr3 16500596 16500670 -201536488 - L2 LINE L2 -26 3246 3174 225 309 43 0 chr3 16501404 16501498 -201535660 - MARNA DNA Mariner -11 575 478 1992 137 0 0 chr3 16501631 16501924 -201535234 - AluSx SINE Alu -19 293 1 458 287 30 12 chr3 16501982 16502146 -201535012 + MIR SINE MIR 50 216 -46 375 301 68 51 chr3 16502214 16502506 -201534652 - MARNA DNA Mariner -229 357 61 21 0 0 0 chr3 16502693 16502714 -201534444 + AT_rich Low_complexity Low_complexity 1 21 0 244 245 19 0 chr3 16504575 16504628 -201532530 + MLT1L LTR MaLR 2 55 -560 490 264 91 8 chr3 16504637 16504758 -201532400 - L2 LINE L2 0 3313 3183 363 298 46 69 chr3 16504821 16505083 -201532075 + MLT1L LTR MaLR 132 387 -228 198 0 0 0 chr3 16505214 16505236 -201531922 + (T)n Simple_repeat Simple_repeat 1 22 0 896 185 161 108 chr3 16505502 16505788 -201531370 + AluJo SINE Alu 1 301 -1 2003 113 3 13 chr3 16505903 16506204 -201530954 - AluSx SINE Alu -14 298 1 2279 99 0 0 chr3 16506205 16506507 -201530651 - AluSx SINE Alu -10 302 1 2069 108 0 0 chr3 16506659 16506959 -201530199 - AluSc SINE Alu 0 300 1 23 33 0 0 chr3 16506969 16506999 -201530159 + AT_rich Low_complexity Low_complexity 1 30 0 333 267 0 0 chr3 16507116 16507191 -201529967 + MIR3 SINE MIR 111 185 -23 608 122 20 20 chr3 16507547 16507645 -201529513 + MER4A LTR ERV1 1 98 -566 1850 131 9 25 chr3 16507646 16507996 -201529162 + MER4A LTR ERV1 262 664 0 575 91 0 61 chr3 16508201 16508300 -201528858 - AluSp/q SINE Alu -6 307 215 1826 161 50 35 chr3 16508300 16508752 -201528406 + LTR10B LTR ERV1 1 547 0 2435 211 64 32 chr3 16508752 16509510 -201527648 + LTR10B-int LTR ERV1 4 846 -6061 2190 249 11 8 chr3 16509545 16510066 -201527092 + LTR10B-int LTR ERV1 1114 1636 -5013 * 5109 113 33 19 chr3 16510060 16510846 -201526312 + LTR10B-int LTR ERV1 1871 2667 -3982 * 5302 275 57 40 chr3 16510831 16512643 -201524515 + LTR10B-int LTR ERV1 3124 4966 -2819 11068 216 22 29 chr3 16512693 16513118 -201524040 + LTR10B-int LTR ERV1 4229 4656 -1993 2285 55 3 55 chr3 16513118 16513446 -201523712 + AluY SINE Alu 1 311 0 11068 216 22 29 chr3 16513446 16514051 -201523107 + LTR10B-int LTR ERV1 4656 5264 -1385 2363 65 0 23 chr3 16514051 16514359 -201522799 - AluY SINE Alu -10 301 1 11068 216 22 29 chr3 16514359 16515766 -201521392 + LTR10B-int LTR ERV1 5264 6649 0 1799 199 51 27 chr3 16515766 16516216 -201520942 + LTR10B LTR ERV1 1 547 0 1481 123 9 0 chr3 16516216 16516428 -201520730 - AluSx SINE Alu -94 218 5 1233 133 0 33 chr3 16516502 16516712 -201520446 - AluJo SINE Alu -109 203 1 660 181 0 0 chr3 16517319 16517485 -201519673 + (TG)n Simple_repeat Simple_repeat 1 166 0 252 188 0 0 chr3 16517501 16517570 -201519588 + (TG)n Simple_repeat Simple_repeat 1 69 0 242 277 89 10 chr3 16517576 16517677 -201519481 + MIR SINE MIR 84 192 -70 331 229 9 101 chr3 16517989 16518098 -201519060 - MIR SINE MIR -73 135 37 1931 149 0 0 chr3 16518102 16518403 -201518755 - AluSx SINE Alu -11 301 1 932 212 15 30 chr3 16518409 16518612 -201518546 - MER20 DNA MER1_type 0 219 20 444 264 16 24 chr3 16518662 16518787 -201518371 + L3 LINE CR1 1344 1467 -110 261 200 0 0 chr3 16518885 16518930 -201518228 + L2 LINE L2 3251 3295 -18 1745 252 74 13 chr3 16519053 16519501 -201517657 + MLT1J LTR MaLR 37 511 0 212 339 132 23 chr3 16519682 16519856 -201517302 - L2 LINE L2 -214 3058 2866 300 330 19 10 chr3 16520135 16520238 -201516920 + L2 LINE L2 3163 3266 -6 2060 117 3 0 chr3 16520260 16520559 -201516599 + AluSx SINE Alu 1 300 -12 345 267 30 0 chr3 16520743 16520844 -201516314 + L1ME LINE L1 5639 5742 -379 1968 138 68 200 chr3 16520884 16520969 -201516189 - LTR12 LTR ERV1 -136 578 483 2317 77 3 3 chr3 16520969 16521279 -201515879 - AluY SINE Alu -1 310 1 1968 138 68 200 chr3 16521279 16521690 -201515468 - LTR12 LTR ERV1 -231 483 190 2260 77 0 7 chr3 16521690 16521988 -201515170 - AluY SINE Alu -15 296 1 1968 138 68 200 chr3 16521988 16522156 -201515002 - LTR12 LTR ERV1 -524 190 1 560 287 122 47 chr3 16523258 16523512 -201513646 - Charlie8 DNA MER1_type -2142 275 3 4335 187 69 12 chr3 16524031 16525220 -201511938 + L1MB7 LINE L1 4915 6183 -1 315 0 0 0 chr3 16525679 16525714 -201511444 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2391 80 0 6 chr3 16525775 16526086 -201511072 + AluSg SINE Alu 1 309 -1 24 53 0 0 chr3 16527013 16527051 -201510107 + AT_rich Low_complexity Low_complexity 1 38 0 198 167 0 0 chr3 16527110 16527146 -201510012 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 1669 131 54 0 chr3 16527299 16527583 -201509575 - AluSg SINE Alu 0 303 6 2663 245 63 27 chr3 16527603 16528500 -201508658 + L1MD1 LINE L1 16 1088 -5452 2300 82 0 0 chr3 16528523 16528817 -201508341 - AluY SINE Alu -17 294 1 449 220 53 0 chr3 16528823 16528973 -201508185 + L1MD1 LINE L1 1200 1357 -5186 208 203 17 17 chr3 16529388 16529447 -201507711 + GA-rich Low_complexity Low_complexity 2 60 0 2355 184 64 32 chr3 16530288 16530912 -201506246 + L1MD1 LINE L1 1303 1946 -4594 4920 197 41 14 chr3 16530916 16531459 -201505699 + L1MD1 LINE L1 4833 5360 -1393 2166 89 14 0 chr3 16531459 16531750 -201505408 + AluSc SINE Alu 1 295 -14 4920 197 41 14 chr3 16531750 16532948 -201504210 + L1MD1 LINE L1 5360 6753 0 278 182 61 30 chr3 16532983 16533049 -201504109 + MER5B DNA MER1_type 111 178 0 532 183 0 0 chr3 16533111 16533204 -201503954 - MER5A DNA MER1_type -86 103 11 198 344 21 52 chr3 16533207 16533399 -201503759 + MER5A DNA MER1_type 1 186 -3 314 285 49 24 chr3 16533681 16533804 -201503354 + L2 LINE L2 2579 2704 -610 729 255 142 71 chr3 16533812 16534263 -201502895 + MER113 DNA MER1_type? 6 488 -33 269 258 56 11 chr3 16534391 16534480 -201502678 + L2 LINE L2 2871 2963 -309 229 294 29 20 chr3 16534556 16534658 -201502500 + GA-rich Low_complexity Low_complexity 2 104 0 1879 135 24 7 chr3 16534813 16535110 -201502048 - AluSx SINE Alu -10 302 1 271 274 71 12 chr3 16535136 16535212 -201501946 + L2 LINE L2 3181 3261 -52 589 181 8 60 chr3 16535212 16535345 -201501813 - MER5B DNA MER1_type 0 178 53 751 232 20 0 chr3 16535356 16535507 -201501651 - FRAM SINE Alu -22 154 1 278 170 57 0 chr3 16535509 16535562 -201501596 - MER5B DNA MER1_type -121 57 2 196 283 35 97 chr3 16535692 16535805 -201501353 - L2 LINE L2 0 3272 3167 2168 94 3 0 chr3 16536159 16536458 -201500700 + AluSx SINE Alu 1 300 -12 447 239 183 7 chr3 16536612 16536754 -201500404 + L2 LINE L2 2591 2757 -557 2071 116 0 3 chr3 16536838 16537139 -201500019 - AluSx SINE Alu -10 302 3 307 322 43 54 chr3 16537601 16537859 -201499299 + L2 LINE L2 2852 3106 -166 1033 101 7 0 chr3 16537897 16538046 -201499112 + AluSg/x SINE Alu 137 286 -26 563 231 56 0 chr3 16538458 16538601 -201498557 + L1 LINE L1 4134 4284 -1862 388 280 86 23 chr3 16538848 16539023 -201498135 - MIR SINE MIR -49 213 28 2327 59 0 10 chr3 16539025 16539330 -201497828 - AluY SINE Alu -9 302 1 243 354 126 24 chr3 16539469 16539596 -201497562 + L2 LINE L2 3108 3247 -25 218 262 97 87 chr3 16539903 16540006 -201497152 + MIR3 SINE MIR 76 179 -29 2169 81 0 20 chr3 16540235 16540532 -201496626 - AluY SINE Alu -18 293 3 2427 78 0 0 chr3 16540534 16540841 -201496317 - AluSc SINE Alu -2 307 1 2567 150 7 72 chr3 16541670 16542178 -201494980 + L1MB3 LINE L1 5676 6148 -35 2092 108 3 10 chr3 16542178 16542475 -201494683 - AluSx SINE Alu -17 295 1 2567 150 7 72 chr3 16542475 16542507 -201494651 + L1MB3 LINE L1 6148 6181 -2 254 345 44 9 chr3 16543388 16543501 -201493657 - MIR SINE MIR -74 134 18 660 308 24 0 chr3 16543507 16543715 -201493443 - MIR SINE MIR -3 259 47 189 0 0 0 chr3 16543775 16543796 -201493362 + (A)n Simple_repeat Simple_repeat 1 21 0 2084 121 0 10 chr3 16544004 16544317 -201492841 - AluSg SINE Alu 0 310 1 485 206 22 59 chr3 16544323 16544459 -201492699 - L1MB3 LINE L1 -2 6181 6051 2039 106 3 3 chr3 16544560 16544873 -201492285 + AluSg SINE Alu 1 313 0 2133 113 3 3 chr3 16544873 16545184 -201491974 + AluSx SINE Alu 1 311 -1 2289 82 0 10 chr3 16545281 16545584 -201491574 - AluSg SINE Alu -10 300 1 501 305 26 13 chr3 16545652 16545885 -201491273 - L1MC5 LINE L1 -436 7525 7290 3406 156 11 58 chr3 16546000 16546205 -201490953 - L1MB2 LINE L1 -3 6168 5955 2166 98 3 0 chr3 16546205 16546501 -201490657 - AluSx SINE Alu -15 297 1 3406 156 11 58 chr3 16546501 16546522 -201490636 - L1MB2 LINE L1 -216 5955 5935 2018 108 0 40 chr3 16546522 16546847 -201490311 - AluSx SINE Alu 0 312 1 1886 155 0 3 chr3 16546849 16547152 -201490006 - AluSx SINE Alu -10 302 1 3406 156 11 58 chr3 16547152 16547581 -201489577 - L1MB2 LINE L1 -237 5934 5540 454 258 68 32 chr3 16547680 16547870 -201489288 + L1ME4a LINE L1 5717 5913 -208 2365 80 0 3 chr3 16548008 16548319 -201488839 + AluY SINE Alu 1 310 -1 386 278 89 39 chr3 16548808 16548988 -201488170 - MER117 DNA MER1_type -6 191 3 243 0 0 0 chr3 16549123 16549150 -201488008 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 186 281 18 0 chr3 16549910 16549967 -201487191 - MIR SINE MIR -6 256 199 1134 167 144 121 chr3 16549971 16550319 -201486839 + MLT1A1 LTR MaLR 4 359 -6 505 289 232 42 chr3 16550547 16551680 -201485478 - L2 LINE L2 -642 2672 1325 217 286 121 36 chr3 16551803 16551943 -201485215 + L3 LINE CR1 1018 1169 -408 2142 82 0 33 chr3 16552141 16552447 -201484711 + AluY SINE Alu 9 304 -7 490 301 100 18 chr3 16552629 16552908 -201484250 + L2 LINE L2 2460 2761 -553 481 209 128 36 chr3 16552951 16553166 -201483992 - MIR SINE MIR -2 260 6 628 301 119 39 chr3 16553198 16553584 -201483574 + L2 LINE L2 2844 3260 -12 186 281 157 11 chr3 16553855 16553944 -201483214 + L2 LINE L2 2998 3099 -214 323 248 119 10 chr3 16554025 16554126 -201483032 + L2 LINE L2 3190 3301 -12 469 234 63 18 chr3 16554128 16554239 -201482919 - L2 LINE L2 0 3313 3198 306 314 177 24 chr3 16554259 16554507 -201482651 + L3 LINE CR1 1203 1488 -89 267 245 185 40 chr3 16554901 16555052 -201482106 - MIR SINE MIR -68 194 22 190 205 26 0 chr3 16555907 16555946 -201481212 - L2 LINE L2 -39 3274 3235 296 284 181 16 chr3 16556049 16556176 -201480982 - MIR SINE MIR -36 226 79 2675 16 0 3 chr3 16556272 16556584 -201480574 + AluYa5 SINE Alu 1 311 0 1433 231 71 37 chr3 16556630 16557120 -201480038 + MLT1E2 LTR MaLR 1 505 0 291 255 2 0 chr3 16557120 16557204 -201479954 - MIR SINE MIR -80 128 43 463 264 76 100 chr3 16557307 16557557 -201479601 + MIR SINE MIR 2 245 -17 291 235 183 11 chr3 16557627 16557780 -201479378 - MIR SINE MIR -63 145 4 182 306 129 20 chr3 16557964 16558111 -201479047 - L2 LINE L2 -5 3267 3105 880 242 175 25 chr3 16558244 16558804 -201478354 - L2 LINE L2 -166 3147 2501 646 137 0 0 chr3 16559033 16559128 -201478030 - L1MC1 LINE L1 -17 6316 6222 1857 47 0 8 chr3 16560437 16560671 -201476487 - MER11A LTR ERVK -1034 232 1 256 296 35 61 chr3 16560723 16560838 -201476320 - L2 LINE L2 -1 3271 3160 431 311 85 85 chr3 16560858 16561199 -201475959 - L2 LINE L2 -1 3271 2931 394 253 50 33 chr3 16561356 16561531 -201475627 + MER20B DNA MER1_type 43 213 -6 2155 103 0 17 chr3 16561597 16561898 -201475260 + AluSg SINE Alu 1 296 -14 2204 94 0 0 chr3 16561898 16562195 -201474963 + AluY SINE Alu 1 297 -14 193 29 29 29 chr3 16562210 16562245 -201474913 + (GAA)n Simple_repeat Simple_repeat 3 37 0 281 333 64 30 chr3 16562515 16562656 -201474502 + MIR SINE MIR 1 147 -66 1428 188 14 11 chr3 16562658 16562935 -201474223 + AluSx SINE Alu 18 295 -17 225 0 0 0 chr3 16562935 16562960 -201474198 + (TG)n Simple_repeat Simple_repeat 2 26 0 976 180 0 0 chr3 16563111 16563272 -201473886 - FRAM SINE Alu -14 162 2 187 333 83 0 chr3 16563901 16563985 -201473173 - MIR SINE MIR -116 146 56 400 266 50 14 chr3 16564442 16564581 -201472577 - L2 LINE L2 -12 3301 3158 202 246 33 16 chr3 16564631 16564692 -201472466 - MER5A DNA MER1_type 0 189 128 2085 114 0 7 chr3 16564728 16565027 -201472131 - AluY SINE Alu -14 297 1 309 276 158 16 chr3 16565397 16565524 -201471634 + MER5B DNA MER1_type 34 178 0 211 172 62 109 chr3 16565525 16565589 -201471569 + MIR3 SINE MIR 105 165 -43 204 278 68 115 chr3 16566226 16566478 -201470680 - L2 LINE L2 -610 2704 2465 184 129 0 0 chr3 16566691 16566722 -201470436 + L2 LINE L2 3225 3255 -17 1513 154 111 64 chr3 16566856 16566947 -201470211 + L1M4 LINE L1 5197 5282 -892 2186 67 3 27 chr3 16566947 16567245 -201469913 - AluY SINE Alu -20 291 1 1513 154 111 64 chr3 16567245 16567586 -201469572 + L1M4 LINE L1 5282 5667 -507 190 205 26 0 chr3 16568520 16568559 -201468599 - L2 LINE L2 -39 3274 3235 296 284 181 16 chr3 16568662 16568789 -201468369 - MIR SINE MIR -36 226 79 2692 13 0 3 chr3 16568885 16569196 -201467962 + AluYa5 SINE Alu 1 310 -1 1997 219 46 40 chr3 16569238 16569474 -201467684 - MER92B LTR ERV1 -58 578 345 1241 179 88 107 chr3 16569474 16569931 -201467227 + LTR7 LTR ERV1 1 448 -2 1997 219 46 40 chr3 16569931 16570215 -201466943 - MER92B LTR ERV1 -291 345 55 1878 153 0 6 chr3 16570217 16570530 -201466628 - AluJo SINE Alu 0 312 2 2414 81 0 0 chr3 16570535 16570844 -201466314 - AluY SINE Alu -2 309 1 2207 110 0 3 chr3 16570844 16571154 -201466004 - AluSq SINE Alu -4 309 1 3223 151 8 6 chr3 16571177 16571693 -201465465 + MER41B LTR ERV1 1 517 -118 923 101 7 0 chr3 16571694 16571833 -201465325 - AluSg/x SINE Alu 0 312 173 583 144 0 41 chr3 16571842 16571939 -201465219 - AluSg/x SINE Alu -112 200 108 2056 117 7 3 chr3 16571939 16572247 -201464911 - AluSx SINE Alu -3 309 1 591 144 48 0 chr3 16572247 16572351 -201464807 + MER41B LTR ERV1 515 623 -12 2073 114 27 0 chr3 16572351 16572375 -201464783 - AluSx SINE Alu -6 306 284 360 0 0 0 chr3 16572375 16572415 -201464743 + (TG)n Simple_repeat Simple_repeat 1 40 0 300 27 0 0 chr3 16572414 16572451 -201464707 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 2073 114 27 0 chr3 16572415 16572724 -201464434 - AluSx SINE Alu -28 284 1 264 240 0 0 chr3 16572742 16572792 -201464366 - MER92B LTR ERV1 -586 50 1 290 217 152 0 chr3 16572970 16573062 -201464096 + L1ME3A LINE L1 5848 5953 -217 851 98 8 0 chr3 16573070 16573193 -201463965 - MER41B LTR ERV1 0 635 512 2039 112 3 3 chr3 16573194 16573497 -201463661 + AluSx SINE Alu 1 303 -9 388 280 86 23 chr3 16573499 16573674 -201463484 + MIR SINE MIR 28 213 -49 563 231 56 0 chr3 16573921 16574064 -201463094 - L1 LINE L1 -1862 4284 4134 1033 101 7 0 chr3 16574476 16574625 -201462533 - AluSg/x SINE Alu -26 284 135 307 322 43 54 chr3 16574663 16574921 -201462237 - L2 LINE L2 -166 3106 2852 2008 126 0 3 chr3 16575380 16575682 -201461476 + AluSx SINE Alu 1 301 -11 447 239 183 7 chr3 16575766 16575908 -201461250 - L2 LINE L2 -557 2757 2591 2148 105 0 0 chr3 16576067 16576362 -201460796 - AluSx SINE Alu -17 295 1 1671 191 112 32 chr3 16576362 16576801 -201460357 + L1MB7 LINE L1 5711 6184 0 487 308 91 0 chr3 16576803 16576946 -201460212 - MER91A DNA MER1_type -40 156 1 298 247 43 21 chr3 16577466 16577559 -201459599 + MIR SINE MIR 48 142 -120 461 231 0 28 chr3 16577949 16578057 -201459101 + MIR SINE MIR 87 191 -71 2229 202 81 16 chr3 16578108 16578614 -201458544 - MLT1F LTR MaLR 0 542 4 253 284 25 12 chr3 16578659 16578740 -201458418 - MIR SINE MIR -179 83 2 257 295 13 26 chr3 16578846 16578924 -201458234 - MIR3 SINE MIR -117 91 15 395 274 32 24 chr3 16578996 16579120 -201458038 + MIR SINE MIR 18 142 -66 980 242 92 84 chr3 16579148 16579416 -201457742 - L2 LINE L2 -5 3308 3044 1991 132 0 3 chr3 16579416 16579711 -201457447 + AluSg SINE Alu 1 294 -16 980 242 92 84 chr3 16579711 16580095 -201457063 - L2 LINE L2 -269 3044 2649 360 155 0 0 chr3 16580571 16580642 -201456516 + A-rich Low_complexity Low_complexity 1 71 0 249 244 162 41 chr3 16581708 16581853 -201455305 + MIR SINE MIR 35 194 -63 306 314 177 24 chr3 16582247 16582495 -201454663 - L3 LINE CR1 -89 1488 1203 469 234 63 18 chr3 16582515 16582626 -201454532 + L2 LINE L2 3198 3313 0 323 248 119 10 chr3 16582628 16582729 -201454429 - L2 LINE L2 -12 3301 3190 377 322 125 56 chr3 16583169 16583560 -201453598 - L2 LINE L2 -11 3261 2844 481 209 128 36 chr3 16583592 16583807 -201453351 + MIR SINE MIR 6 260 -2 490 301 100 18 chr3 16583850 16584129 -201453029 - L2 LINE L2 -553 2761 2460 2167 78 0 33 chr3 16584311 16584617 -201452541 - AluY SINE Alu -7 304 9 208 293 121 36 chr3 16584815 16584955 -201452203 - L3 LINE CR1 -408 1169 1018 400 266 50 14 chr3 16585469 16585608 -201451550 + L2 LINE L2 3158 3301 -12 187 333 83 0 chr3 16586065 16586149 -201451009 + MIR SINE MIR 56 146 -116 976 180 0 0 chr3 16586773 16586934 -201450224 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16587085 16587110 -201450048 + (CA)n Simple_repeat Simple_repeat 2 26 0 1160 224 14 18 chr3 16587110 16587387 -201449771 - AluSg SINE Alu -17 293 18 281 333 64 30 chr3 16587389 16587530 -201449628 - MIR SINE MIR -66 142 1 506 277 70 76 chr3 16587553 16587896 -201449262 + L2 LINE L2 2921 3261 -11 1134 247 125 23 chr3 16588019 16588551 -201448607 + MLT1L LTR MaLR 1 612 -3 340 335 178 4 chr3 16588643 16588873 -201448285 + L2 LINE L2 3002 3271 -1 341 250 0 0 chr3 16588962 16589030 -201448128 + MIR3 SINE MIR 93 160 -48 437 267 10 0 chr3 16589863 16589964 -201447194 + MIR SINE MIR 54 155 -107 258 206 0 0 chr3 16590103 16590176 -201446982 + (CA)n Simple_repeat Simple_repeat 2 74 0 1233 133 0 33 chr3 16590783 16590993 -201446165 + AluJo SINE Alu 1 203 -109 2266 104 0 3 chr3 16591067 16591375 -201445783 + AluSq SINE Alu 5 311 -2 605 168 16 0 chr3 16592145 16592270 -201444888 + CT-rich Low_complexity Low_complexity 2 128 0 1779 200 19 81 chr3 16592270 16592902 -201444256 - L1M4 LINE L1 -1898 4248 3681 * 4459 145 17 36 chr3 16592898 16592978 -201444180 - L1MA8 LINE L1 -260 6031 5951 2048 113 16 19 chr3 16592978 16593289 -201443869 - AluSg SINE Alu 0 310 1 4459 145 17 36 chr3 16593289 16593635 -201443523 - L1MA8 LINE L1 -340 5951 5600 1824 134 0 10 chr3 16593635 16593955 -201443203 - AluY SINE Alu 0 311 1 4459 145 17 36 chr3 16593955 16594244 -201442914 - L1MA8 LINE L1 -691 5600 5331 2228 100 0 13 chr3 16594244 16594554 -201442604 - AluY SINE Alu -5 306 1 4459 145 17 36 chr3 16594554 16594786 -201442372 - L1MA8 LINE L1 -960 5331 5096 625 71 0 0 chr3 16594787 16594871 -201442287 + MLT2A2 LTR ERVL 1 84 -369 * 1010 198 56 34 chr3 16594868 16595186 -201441972 + MLT2B3 LTR ERVL 230 554 0 4663 154 82 35 chr3 16595229 16595727 -201441431 - L1MA8 LINE L1 -1158 4988 4515 849 213 6 12 chr3 16595727 16595887 -201441271 - FAM SINE Alu -16 159 1 4663 154 82 35 chr3 16595887 16596422 -201440736 - L1MA8 LINE L1 -1631 4515 3906 241 200 0 17 chr3 16596394 16596454 -201440704 - L1M4 LINE L1 -2446 3700 3642 * 3586 214 43 8 chr3 16596465 16597421 -201439737 - L1M4 LINE L1 -2812 3334 2346 * 4125 234 49 92 chr3 16597414 16597934 -201439224 - L1M4 LINE L1 -1099 5047 4506 233 185 0 19 chr3 16597934 16597988 -201439170 - HSMAR1 DNA Mariner 0 1287 1235 329 43 22 0 chr3 16597997 16598043 -201439115 + MADE1 DNA Mariner 33 79 -1 4125 234 49 92 chr3 16598043 16598116 -201439042 - L1M4 LINE L1 -1648 4498 4423 1534 176 10 23 chr3 16598116 16598417 -201438741 + AluJo SINE Alu 1 297 -15 4125 234 49 92 chr3 16598417 16599805 -201437353 - L1M4 LINE L1 -1723 4423 3047 1812 243 53 13 chr3 16599836 16600305 -201436853 - L1ME1 LINE L1 -84 6082 5595 2239 85 0 3 chr3 16600305 16600600 -201436558 + AluSg SINE Alu 3 296 -14 244 128 85 0 chr3 16600600 16600647 -201436511 + L1MB3 LINE L1 6132 6182 -1 196 375 45 0 chr3 16600971 16601059 -201436099 + L2 LINE L2 2982 3073 -199 522 246 23 0 chr3 16601070 16601200 -201435958 - MER94 DNA DNA -1 133 1 321 276 13 0 chr3 16601268 16601344 -201435814 + L2 LINE L2 3163 3239 -33 318 257 43 0 chr3 16601362 16601432 -201435726 + LTR16B LTR ERVL 386 458 -6 294 29 0 0 chr3 16601665 16601700 -201435458 + (TC)n Simple_repeat Simple_repeat 2 36 0 592 250 79 7 chr3 16602010 16602162 -201434996 - MER5B DNA MER1_type -1 177 15 4162 33 19 0 chr3 16602501 16602982 -201434176 + LTR2B LTR ERV1 1 490 0 241 322 22 11 chr3 16603029 16603119 -201434039 + L2 LINE L2 3173 3263 -9 234 0 0 0 chr3 16604191 16604217 -201432941 + (TTA)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chr3 16604928 16604961 -201432197 + AT_rich Low_complexity Low_complexity 1 33 0 394 275 96 18 chr3 16607951 16608118 -201429040 + MER34 LTR ERV1 306 485 -57 211 164 164 36 chr3 16608307 16608362 -201428796 + L2 LINE L2 3168 3229 -43 455 243 221 7 chr3 16608561 16608699 -201428459 + MER5B DNA MER1_type 1 168 -10 419 238 94 62 chr3 16608699 16608859 -201428299 + MER5A DNA MER1_type 2 166 -23 405 226 0 57 chr3 16608785 16608891 -201428267 - MER5A DNA MER1_type -87 102 3 * 228 282 0 0 chr3 16609029 16609095 -201428063 - MIR SINE MIR -67 141 87 198 299 0 60 chr3 16609113 16609180 -201427978 - L2 LINE L2 -3 3269 3207 601 257 69 47 chr3 16609547 16609823 -201427335 + MLT1L LTR MaLR 1 282 -333 207 100 0 0 chr3 16609858 16609888 -201427270 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 376 280 0 9 chr3 16610221 16610328 -201426830 - AluY SINE Alu -194 107 2 775 235 73 14 chr3 16610498 16610782 -201426376 + LTR16C LTR ERVL 157 484 -7 706 197 45 0 chr3 16610817 16610949 -201426209 - MIR SINE MIR -107 155 18 432 248 66 25 chr3 16610967 16611088 -201426070 + MIR SINE MIR 124 249 -13 417 211 0 0 chr3 16611869 16611992 -201425166 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 368 395 0 7 chr3 16612009 16612156 -201425002 - L2 LINE L2 -18 3254 3109 632 241 47 65 chr3 16612713 16612945 -201424213 + MIR SINE MIR 1 228 -34 * 879 276 16 12 chr3 16612931 16613174 -201423984 - MIR SINE MIR 0 262 19 301 184 87 97 chr3 16614345 16614448 -201422710 - L1ME4a LINE L1 -9 6112 6011 328 281 21 21 chr3 16614490 16614586 -201422572 + MIR SINE MIR 86 181 -81 558 299 21 46 chr3 16614656 16614981 -201422177 - L1ME4a LINE L1 -194 5927 5611 2165 90 7 3 chr3 16614986 16615286 -201421872 + AluSx SINE Alu 1 301 -11 320 158 118 191 chr3 16615298 16615450 -201421708 + MLT1H LTR MaLR 409 549 0 774 189 223 55 chr3 16615489 16615555 -201421603 + MER69B DNA AcHobo 78 132 -2394 2170 169 39 7 chr3 16615555 16615986 -201421172 - L1MB7 LINE L1 0 6184 5740 774 189 223 55 chr3 16615986 16616157 -201421001 + MER69B DNA AcHobo 132 355 -2171 811 161 0 2 chr3 16616166 16616366 -201420792 + MSTC LTR MaLR 3 249 -179 * 2186 139 71 0 chr3 16616364 16616703 -201420455 + MSTC LTR MaLR 66 428 0 2335 245 77 38 chr3 16616709 16617506 -201419652 + MER69B DNA AcHobo 368 1195 -31 533 265 23 0 chr3 16618151 16618283 -201418875 - MER58B DNA MER1_type -4 337 203 272 242 37 0 chr3 16618620 16618707 -201418451 - MER58 DNA MER1_type -103 238 27 461 245 9 9 chr3 16618717 16618823 -201418335 + L2 LINE L2 3150 3255 -17 186 244 0 0 chr3 16619215 16619260 -201417898 - L2 LINE L2 -1 3312 3268 2347 106 0 0 chr3 16619388 16619689 -201417469 - AluSg SINE Alu -6 304 4 2318 84 0 10 chr3 16620409 16620705 -201416453 + AluY SINE Alu 4 296 -15 1161 136 0 0 chr3 16620706 16620861 -201416297 + AluSg/x SINE Alu 134 288 -24 213 302 94 47 chr3 16622231 16622423 -201414735 + L2 LINE L2 3019 3219 -94 831 226 11 5 chr3 16622470 16622656 -201414502 + MER72 LTR ERV1 1 187 -535 258 105 0 0 chr3 16622823 16622861 -201414297 + (A)n Simple_repeat Simple_repeat 1 38 0 343 167 0 30 chr3 16623426 16623492 -201413666 - AluJ/FRAM SINE Alu -12 290 227 403 186 0 0 chr3 16623512 16623582 -201413576 - LTR12 LTR ERV1 -290 424 355 302 260 0 0 chr3 16623582 16623659 -201413499 - LTR30 LTR ERV1 -102 620 544 1127 141 34 93 chr3 16623661 16623952 -201413206 - LTR12 LTR ERV1 -440 274 1 559 189 0 0 chr3 16623958 16624048 -201413110 - FRAM/FAM SINE Alu -92 84 1 297 0 0 0 chr3 16624057 16624090 -201413068 + (TA)n Simple_repeat Simple_repeat 2 34 0 1944 177 71 0 chr3 16624198 16624593 -201412565 + LOR1b LTR ERV1 1 423 -38 11998 112 65 21 chr3 16624593 16624825 -201412333 + LOR1b-int LTR ERV1 32 252 -7868 2183 122 14 0 chr3 16624825 16625121 -201412037 - AluSg SINE Alu -10 300 1 11998 112 65 21 chr3 16625121 16625255 -201411903 + LOR1b-int LTR ERV1 252 379 -7741 279 0 0 0 chr3 16625255 16625286 -201411872 + (TG)n Simple_repeat Simple_repeat 2 32 0 11998 112 65 21 chr3 16625286 16625856 -201411302 + LOR1b-int LTR ERV1 379 922 -7198 2259 94 3 0 chr3 16625856 16626144 -201411014 + AluSx SINE Alu 1 289 -23 11998 112 65 21 chr3 16626144 16627274 -201409884 + LOR1b-int LTR ERV1 922 2201 -5919 2224 205 138 65 chr3 16627274 16628044 -201409114 + LTR1B LTR ERV1 1 826 0 11998 112 65 21 chr3 16628044 16628121 -201409037 + LOR1b-int LTR ERV1 2201 2273 -5847 7432 135 23 40 chr3 16628119 16628333 -201408825 + LOR1b-int LTR ERV1 2376 2592 -5528 * 2284 100 23 3 chr3 16628333 16628634 -201408524 - AluSx SINE Alu -3 309 3 7432 135 23 40 chr3 16628634 16629819 -201407339 + LOR1b-int LTR ERV1 2592 3751 -4369 6421 143 128 102 chr3 16629822 16631474 -201405684 - pTR5 LTR ERV1 0 2438 743 4915 129 39 1 chr3 16631476 16632282 -201404876 + LOR1b-int LTR ERV1 3754 4589 -3531 2488 71 0 3 chr3 16632282 16632579 -201404579 - AluY SINE Alu -15 296 1 750 235 71 6 chr3 16633656 16633826 -201403332 - MIR SINE MIR -81 181 1 397 313 38 25 chr3 16634558 16634718 -201402440 - MIR SINE MIR -67 195 34 227 287 191 0 chr3 16634718 16634812 -201402346 + MIR SINE MIR 134 245 -17 274 212 78 57 chr3 16635186 16635289 -201401869 - MIR SINE MIR -76 132 39 1096 253 83 46 chr3 16637217 16637712 -201399446 + L2 LINE L2 2488 2999 -314 261 0 0 0 chr3 16637725 16637754 -201399404 + (T)n Simple_repeat Simple_repeat 1 29 0 679 303 55 76 chr3 16638174 16638517 -201398641 + L2 LINE L2 2933 3268 -4 256 150 0 0 chr3 16638617 16638657 -201398501 + L2 LINE L2 3230 3269 -3 702 253 124 0 chr3 16639696 16639898 -201397260 - MIR SINE MIR 0 262 36 23 33 0 0 chr3 16641184 16641214 -201395944 + AT_rich Low_complexity Low_complexity 1 30 0 242 239 43 141 chr3 16641974 16642137 -201395021 - MIR SINE MIR -112 150 4 188 282 39 78 chr3 16642231 16642334 -201394824 + MER5A DNA MER1_type 1 99 -90 * 405 263 88 39 chr3 16642323 16642427 -201394731 - MIR SINE MIR -62 146 69 2233 55 42 28 chr3 16642427 16642716 -201394442 + AluY SINE Alu 1 293 -18 405 263 88 39 chr3 16642716 16642785 -201394373 - MIR SINE MIR -139 69 5 274 212 78 57 chr3 16644497 16644600 -201392558 + MIR SINE MIR 39 132 -76 227 287 191 0 chr3 16644974 16645068 -201392090 - MIR SINE MIR -17 245 134 625 256 0 0 chr3 16645068 16645201 -201391957 + MIR SINE MIR 34 166 -96 2784 140 25 2 chr3 16645201 16645687 -201391471 + L1MB2 LINE L1 5586 6082 -89 261 229 0 0 chr3 16645691 16645739 -201391419 + Tigger3(Golem) DNA MER2_type 2982 3029 0 357 211 56 0 chr3 16645772 16645862 -201391296 + L1MB2 LINE L1 6076 6170 -1 432 215 32 0 chr3 16645883 16645976 -201391182 + MIR SINE MIR 157 252 -10 477 260 132 0 chr3 16646077 16646208 -201390950 + MIR SINE MIR 38 182 -62 277 198 74 33 chr3 16646469 16646539 -201390619 - LTR33 LTR ERVL -2 519 440 2165 158 18 0 chr3 16646539 16646880 -201390278 + MER7A DNA MER2_type 1 345 -1 277 198 74 33 chr3 16646880 16646930 -201390228 - LTR33 LTR ERVL -81 440 394 784 232 96 16 chr3 16646977 16647227 -201389931 - LTR33 LTR ERVL -251 270 1 264 224 60 15 chr3 16647705 16647772 -201389386 - L2 LINE L2 -3 3269 3200 450 283 114 27 chr3 16648008 16648227 -201388931 - L2 LINE L2 -508 2806 2569 520 297 0 7 chr3 16648682 16648830 -201388328 + MIR SINE MIR 91 237 -25 255 306 71 20 chr3 16648898 16648996 -201388162 - L2 LINE L2 -9 3263 3161 685 286 24 14 chr3 16649007 16649217 -201387941 + MIR SINE MIR 6 217 -45 763 263 125 4 chr3 16649752 16649984 -201387174 + MIR SINE MIR 2 261 -1 300 333 12 0 chr3 16650091 16650172 -201386986 - L2 LINE L2 -4 3268 3187 245 347 16 40 chr3 16650249 16650373 -201386785 - MIR SINE MIR -69 139 19 547 282 119 36 chr3 16650500 16650911 -201386247 + L1ME LINE L1 5374 5818 -303 384 243 117 9 chr3 16651110 16651221 -201385937 - L2 LINE L2 0 3313 3191 731 262 89 13 chr3 16652570 16652795 -201384363 - MIR SINE MIR -18 244 3 6777 106 47 19 chr3 16652865 16653907 -201383251 - MER11C LTR ERVK 0 1071 1 364 318 70 16 chr3 16654394 16654652 -201382506 + L2 LINE L2 2376 2647 -667 232 322 35 49 chr3 16654628 16654771 -201382387 + MIR SINE MIR 69 209 -53 * 489 305 32 7 chr3 16655077 16655231 -201381927 - MIR3 SINE MIR -14 194 37 398 328 144 13 chr3 16655574 16655776 -201381382 - L2 LINE L2 -49 3223 2986 2245 91 0 77 chr3 16655776 16656115 -201381043 + AluSq SINE Alu 1 313 0 398 328 144 13 chr3 16656115 16656141 -201381017 - L2 LINE L2 -286 2986 2965 900 293 154 47 chr3 16656394 16656860 -201380298 - L2 LINE L2 0 3313 2784 411 68 0 0 chr3 16656860 16656919 -201380239 + (GGATG)n Simple_repeat Simple_repeat 2 60 0 900 293 154 47 chr3 16656919 16657030 -201380128 - L2 LINE L2 -529 2784 2686 210 71 0 0 chr3 16657412 16657440 -201379718 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 3686 118 43 42 chr3 16657914 16658042 -201379116 - L1PB4 LINE L1 0 6156 6030 2158 124 10 3 chr3 16658042 16658348 -201378810 - AluSc SINE Alu 0 309 2 3686 118 43 42 chr3 16658348 16658839 -201378319 - L1PB4 LINE L1 -126 6030 5536 2393 88 0 0 chr3 16659006 16659344 -201377814 - AluSq SINE Alu 0 313 2 531 224 11 10 chr3 16659597 16659731 -201377427 - MIR SINE MIR -57 151 15 337 246 160 46 chr3 16659985 16660160 -201376998 - MIR SINE MIR -27 235 41 288 297 195 0 chr3 16660274 16660392 -201376766 + MER91A DNA MER1_type 20 160 -36 296 227 45 0 chr3 16660425 16660491 -201376667 + MER91A DNA MER1_type 128 196 0 183 80 0 0 chr3 16660599 16660624 -201376534 + (TCCCC)n Simple_repeat Simple_repeat 3 27 0 535 270 48 118 chr3 16660853 16661387 -201375771 - L2 LINE L2 -85 3187 2686 1245 264 88 37 chr3 16662101 16662891 -201374267 - L2 LINE L2 -1 3312 2470 306 287 28 0 chr3 16665669 16665777 -201371381 - L1MC4 LINE L1 -4 8038 7928 371 259 45 0 chr3 16665788 16665900 -201371258 - MLT2E LTR ERVL -2 626 510 899 254 88 62 chr3 16665903 16666138 -201371020 + L2 LINE L2 2950 3198 -115 2336 103 3 0 chr3 16666138 16666449 -201370709 + AluSx SINE Alu 1 312 0 899 254 88 62 chr3 16666449 16666567 -201370591 + L2 LINE L2 3198 3312 -1 225 159 0 0 chr3 16666574 16666618 -201370540 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 592 256 174 19 chr3 16666649 16666856 -201370302 + MIR SINE MIR 24 262 0 662 312 48 21 chr3 16667390 16667737 -201369421 - L1ME LINE L1 -442 5679 5318 1779 178 0 14 chr3 16667737 16668030 -201369128 - AluJo SINE Alu -23 289 1 662 312 48 21 chr3 16668030 16668096 -201369062 - L1ME LINE L1 -803 5318 5255 300 240 42 42 chr3 16668108 16668204 -201368954 + L1MCa LINE L1 1969 2064 -4362 * 301 318 47 0 chr3 16668154 16668239 -201368919 - L1MC4 LINE L1 -1340 6702 6614 414 0 50 0 chr3 16668244 16668331 -201368827 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 323 263 71 0 chr3 16668477 16668576 -201368582 + MIR SINE MIR 138 243 -19 1543 194 3 24 chr3 16669063 16669351 -201367807 + AluJo SINE Alu 1 282 -30 1227 195 4 30 chr3 16669115 16669352 -201367806 + AluJo SINE Alu 53 312 0 229 35 0 0 chr3 16669352 16669381 -201367777 + (CAAAA)n Simple_repeat Simple_repeat 2 140 0 505 254 102 83 chr3 16669671 16669751 -201367407 - LTR16B LTR ERVL -1 463 386 1058 137 0 0 chr3 16669751 16669919 -201367239 - L1MA4 LINE L1 -5 6295 6128 505 254 102 83 chr3 16669919 16670259 -201366899 - LTR16B LTR ERVL -78 386 35 391 287 77 41 chr3 16670303 16670402 -201366756 - MIR SINE MIR -13 249 155 2361 144 95 0 chr3 16670402 16670791 -201366367 + MSTB LTR MaLR 1 426 0 391 287 77 41 chr3 16670791 16670886 -201366272 - MIR SINE MIR -107 155 48 857 245 89 57 chr3 16671042 16671523 -201365635 - LTR8A LTR ERV1 0 727 108 337 236 85 47 chr3 16671667 16671773 -201365385 - LTR8 LTR ERV1 -581 110 1 318 281 43 58 chr3 16671964 16672103 -201365055 + MER5A DNA MER1_type 29 165 -24 1858 159 45 109 chr3 16672155 16672537 -201364621 + L1MC4 LINE L1 7513 7918 -124 2359 107 0 0 chr3 16672537 16672836 -201364322 + AluSx SINE Alu 1 299 -13 1858 159 45 109 chr3 16672836 16672974 -201364184 + L1MC4 LINE L1 7918 7998 -44 2046 145 0 0 chr3 16672974 16673282 -201363876 - AluSx SINE Alu 0 308 1 1858 159 45 109 chr3 16673282 16673318 -201363840 + L1MC4 LINE L1 7998 8035 -7 304 261 252 37 chr3 16673475 16673693 -201363465 + L2 LINE L2 2971 3235 -37 399 304 60 129 chr3 16674054 16674558 -201362600 + L2 LINE L2 2804 3272 0 387 232 13 7 chr3 16674584 16674735 -201362423 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 198 143 0 0 chr3 16674770 16674805 -201362353 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 719 191 6 0 chr3 16674835 16674997 -201362161 + (TGGA)n Simple_repeat Simple_repeat 1 163 0 228 163 0 0 chr3 16675017 16675060 -201362098 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 229 233 12 12 chr3 16675178 16675264 -201361894 + (TGGA)n Simple_repeat Simple_repeat 4 89 0 2156 118 21 0 chr3 16675427 16675716 -201361442 + AluSx SINE Alu 1 295 -17 274 212 78 57 chr3 16677497 16677600 -201359558 + MIR SINE MIR 39 132 -76 201 298 191 0 chr3 16677974 16678068 -201359090 - MIR SINE MIR -17 245 134 651 248 0 0 chr3 16678068 16678201 -201358957 + MIR SINE MIR 34 166 -96 2847 139 18 2 chr3 16678201 16678690 -201358468 + L1MB2 LINE L1 5586 6082 -89 261 229 0 0 chr3 16678694 16678742 -201358416 + Tigger3(Golem) DNA MER2_type 2981 3028 -1 331 222 56 0 chr3 16678775 16678865 -201358293 + L1MB2 LINE L1 6076 6170 -1 432 215 32 0 chr3 16678886 16678979 -201358179 + MIR SINE MIR 157 252 -10 487 252 132 0 chr3 16679080 16679211 -201357947 + MIR SINE MIR 38 182 -62 277 198 74 33 chr3 16679472 16679542 -201357616 - LTR33 LTR ERVL -2 519 440 2165 158 18 0 chr3 16679542 16679883 -201357275 + MER7A DNA MER2_type 1 345 -1 277 198 74 33 chr3 16679883 16679933 -201357225 - LTR33 LTR ERVL -81 440 394 761 236 96 16 chr3 16679980 16680230 -201356928 - LTR33 LTR ERVL -251 270 1 264 224 60 15 chr3 16680708 16680775 -201356383 - L2 LINE L2 -3 3269 3200 450 283 114 27 chr3 16681011 16681230 -201355928 - L2 LINE L2 -508 2806 2569 520 297 0 7 chr3 16681685 16681833 -201355325 + MIR SINE MIR 91 237 -25 255 306 71 20 chr3 16681901 16681999 -201355159 - L2 LINE L2 -9 3263 3161 685 286 24 14 chr3 16682010 16682220 -201354938 + MIR SINE MIR 6 217 -45 763 263 125 4 chr3 16682755 16682987 -201354171 + MIR SINE MIR 2 261 -1 300 333 12 0 chr3 16683094 16683175 -201353983 - L2 LINE L2 -4 3268 3187 245 347 16 40 chr3 16683252 16683376 -201353782 - MIR SINE MIR -69 139 19 547 282 119 36 chr3 16683503 16683914 -201353244 + L1ME LINE L1 5374 5818 -303 384 243 117 9 chr3 16684113 16684224 -201352934 - L2 LINE L2 0 3313 3191 731 262 89 13 chr3 16685573 16685798 -201351360 - MIR SINE MIR -18 244 3 6782 108 45 16 chr3 16685868 16686909 -201350249 - MER11C LTR ERVK 0 1071 1 342 335 50 6 chr3 16687922 16688104 -201349054 + L2 LINE L2 2655 2844 -470 613 191 13 40 chr3 16688147 16688299 -201348859 - L1M4 LINE L1 -1488 4658 4511 508 264 61 112 chr3 16688381 16688892 -201348266 + MER34 LTR ERV1 1 485 -57 214 164 164 36 chr3 16689081 16689136 -201348022 + L2 LINE L2 3168 3229 -43 385 279 39 10 chr3 16689368 16689470 -201347688 + MER5B DNA MER1_type 64 168 -10 427 250 62 94 chr3 16689470 16689662 -201347496 - MER5A DNA MER1_type -1 188 3 232 282 0 0 chr3 16689799 16689865 -201347293 - MIR SINE MIR -67 141 87 198 299 0 60 chr3 16689883 16689950 -201347208 - L2 LINE L2 -3 3269 3207 341 277 66 69 chr3 16690317 16690620 -201346538 + MLT1L LTR MaLR 1 302 -313 290 136 236 9 chr3 16690824 16690896 -201346262 + L1ME3A LINE L1 5585 5671 -507 2133 132 7 0 chr3 16690928 16691223 -201345935 - AluJo SINE Alu -15 297 1 1418 243 87 15 chr3 16691223 16691704 -201345454 + L1ME3A LINE L1 5655 6170 0 230 303 0 0 chr3 16691883 16691949 -201345209 - MIR SINE MIR -87 175 110 331 297 35 47 chr3 16692121 16692377 -201344781 + L2 LINE L2 2810 3062 -210 295 311 0 50 chr3 16692448 16692567 -201344591 - MIR SINE MIR -70 192 80 595 242 55 24 chr3 16692634 16692799 -201344359 - MIR SINE MIR 0 262 93 480 301 45 63 chr3 16692874 16693034 -201344124 + L1ME4a LINE L1 5446 5607 -514 2327 92 7 3 chr3 16693034 16693338 -201343820 - AluSx SINE Alu -7 305 1 480 301 45 63 chr3 16693338 16693668 -201343490 + L1ME4a LINE L1 5607 5927 -194 333 281 21 21 chr3 16693738 16693834 -201343324 - MIR SINE MIR -81 181 86 304 233 29 39 chr3 16693876 16693979 -201343179 + L1ME4a LINE L1 6011 6112 -9 925 272 16 12 chr3 16695142 16695385 -201341773 + MIR SINE MIR 19 262 0 720 234 35 53 chr3 16695371 16695598 -201341560 - MIR SINE MIR -34 228 6 * 362 248 97 35 chr3 16695693 16695838 -201341320 + MIR SINE MIR 7 160 -102 425 300 74 97 chr3 16696246 16696913 -201340245 + L2 LINE L2 2637 3272 0 282 217 0 0 chr3 16696933 16697002 -201340156 + (TGGG)n Simple_repeat Simple_repeat 2 70 0 333 201 11 63 chr3 16697049 16697223 -201339935 + (GAATG)n Simple_repeat Simple_repeat 2 166 0 3685 124 50 2 chr3 16697371 16697993 -201339165 + LOR1b-int LTR ERV1 3938 4589 -3531 868 91 0 0 chr3 16697993 16698103 -201339055 - AluY SINE Alu -15 296 187 5678 98 23 49 chr3 16698103 16699078 -201338080 + LOR1b-int LTR ERV1 4576 5524 -2596 1604 56 35 4 chr3 16699068 16699300 -201337858 + LOR1b-int LTR ERV1 5801 6039 -2081 * 495 167 11 0 chr3 16699302 16699392 -201337766 + LOR1b-int LTR ERV1 8030 8120 0 2360 156 66 14 chr3 16699392 16699829 -201337329 + LOR1b LTR ERV1 1 460 -1 181 321 73 42 chr3 16699921 16700086 -201337072 + L2 LINE L2 2481 2650 -664 2604 90 125 188 chr3 16700102 16701053 -201336105 - LTR12 LTR ERV1 0 2427 1 338 274 113 19 chr3 16701126 16701338 -201335820 + L2 LINE L2 2836 3067 -205 411 268 129 16 chr3 16701438 16701632 -201335526 + MER112 DNA MER1_type 39 254 -6 198 203 316 25 chr3 16701653 16701732 -201335426 + L2 LINE L2 3212 3313 0 225 94 0 0 chr3 16701830 16701862 -201335296 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 483 328 11 11 chr3 16701937 16702111 -201335047 + MER5A DNA MER1_type 7 180 -9 375 274 215 0 chr3 16702502 16702637 -201334521 - MIR SINE MIR -79 183 20 218 354 0 0 chr3 16702883 16702979 -201334179 + (CA)n Simple_repeat Simple_repeat 2 97 0 802 279 97 61 chr3 16703034 16703364 -201333794 + MLT1H LTR MaLR 37 392 -157 2546 67 0 3 chr3 16703364 16703661 -201333497 + AluSc SINE Alu 1 296 -13 802 279 97 61 chr3 16703661 16703825 -201333333 + MLT1H LTR MaLR 392 549 0 709 189 223 55 chr3 16703864 16703930 -201333228 + MER69B DNA AcHobo 78 132 -2394 2274 162 37 5 chr3 16703930 16704361 -201332797 - L1MB7 LINE L1 0 6184 5740 709 189 223 55 chr3 16704361 16704532 -201332626 + MER69B DNA AcHobo 132 355 -2171 767 161 0 2 chr3 16704541 16704741 -201332417 + MSTC LTR MaLR 3 249 -179 * 2083 136 71 0 chr3 16704739 16705078 -201332080 + MSTC LTR MaLR 66 428 0 2253 243 70 36 chr3 16705084 16705885 -201331273 + MER69B DNA AcHobo 368 1195 -31 642 220 23 0 chr3 16706530 16706662 -201330496 - MER58B DNA MER1_type -4 337 203 257 242 37 0 chr3 16706999 16707086 -201330072 - MER58 DNA MER1_type -103 238 27 304 153 17 17 chr3 16707096 16707155 -201330003 + L2 LINE L2 3150 3208 -64 267 103 0 0 chr3 16707465 16707504 -201329654 + (A)n Simple_repeat Simple_repeat 1 39 0 1982 196 15 10 chr3 16707528 16707932 -201329226 + MER72 LTR ERV1 317 722 0 224 238 0 0 chr3 16708197 16708239 -201328919 - MIR SINE MIR -3 259 218 435 232 39 15 chr3 16708878 16709007 -201328151 - MIR SINE MIR -62 146 62 2493 74 0 0 chr3 16709032 16709328 -201327830 + AluSc SINE Alu 1 296 -13 621 291 58 5 chr3 16709558 16709747 -201327411 - MIR SINE MIR -56 206 8 363 292 33 0 chr3 16709750 16709870 -201327288 - MIR SINE MIR -36 226 103 450 286 29 47 chr3 16710195 16710366 -201326792 - MIR3 SINE MIR -34 174 7 604 248 15 7 chr3 16710849 16710986 -201326172 - MIR SINE MIR -85 177 40 1414 149 0 14 chr3 16711289 16711511 -201325647 + AluJb SINE Alu 87 305 -7 510 239 89 61 chr3 16711582 16711762 -201325396 + MIR3 SINE MIR 6 190 -18 1324 218 16 76 chr3 16711818 16711968 -201325190 + L1ME3 LINE L1 5746 5903 -259 1907 150 3 20 chr3 16711968 16712262 -201324896 + AluJb SINE Alu 1 289 -23 414 0 0 0 chr3 16712263 16712309 -201324849 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1324 218 16 76 chr3 16712309 16712591 -201324567 + L1ME3 LINE L1 5902 6154 -8 221 300 0 0 chr3 16712604 16712674 -201324484 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 225 245 0 0 chr3 16713351 16713404 -201323754 + MER52A LTR ERV1 1 53 -1702 5610 171 109 90 chr3 16713860 16715250 -201321908 + MER52A LTR ERV1 335 1755 0 5405 118 252 85 chr3 16715520 16716974 -201320184 + pTR5 LTR ERV1 743 2438 0 491 281 31 19 chr3 16716977 16717137 -201320021 - MIR SINE MIR -81 181 20 403 308 113 23 chr3 16717823 16718125 -201319033 + LTR16A1 LTR ERVL 81 409 -48 203 103 0 0 chr3 16718147 16718176 -201318982 - MIR SINE MIR -117 145 117 2668 232 38 17 chr3 16718886 16719231 -201317927 - L1ME2 LINE L1 0 6164 5827 2313 99 3 0 chr3 16719231 16719534 -201317624 - AluSc SINE Alu -5 304 1 2668 232 38 17 chr3 16719534 16720033 -201317125 - L1ME2 LINE L1 -337 5827 5283 682 284 96 30 chr3 16720534 16720939 -201316219 + MLT1L LTR MaLR 165 596 -19 4416 230 47 94 chr3 16720999 16721361 -201315797 - L1MB7 LINE L1 -9 6175 5797 2320 104 0 0 chr3 16721361 16721659 -201315499 - AluSx SINE Alu -14 298 1 4416 230 47 94 chr3 16721659 16722285 -201314873 - L1MB7 LINE L1 -387 5797 5143 2189 87 10 20 chr3 16722285 16722584 -201314574 - AluSc SINE Alu -13 296 1 4416 230 47 94 chr3 16722584 16724230 -201312928 - L1MB7 LINE L1 -1041 5143 3681 * 4489 146 17 37 chr3 16724226 16724306 -201312852 - L1MA8 LINE L1 -260 6031 5951 2172 113 16 19 chr3 16724306 16724617 -201312541 - AluSg SINE Alu 0 310 1 4489 146 17 37 chr3 16724617 16724963 -201312195 - L1MA8 LINE L1 -340 5951 5600 2168 118 0 3 chr3 16724963 16725281 -201311877 - AluY SINE Alu 0 311 1 4489 146 17 37 chr3 16725281 16725570 -201311588 - L1MA8 LINE L1 -691 5600 5332 2390 102 0 13 chr3 16725570 16725885 -201311273 - AluY SINE Alu 0 311 1 4489 146 17 37 chr3 16725885 16726118 -201311040 - L1MA8 LINE L1 -959 5332 5096 626 71 0 0 chr3 16726119 16726203 -201310955 + MLT2A2 LTR ERVL 1 84 -369 * 1002 198 56 34 chr3 16726200 16726518 -201310640 + MLT2B3 LTR ERVL 230 554 0 5211 144 82 17 chr3 16726561 16727043 -201310115 - L1MA8 LINE L1 -1158 4988 4539 1063 171 6 11 chr3 16727043 16727219 -201309939 - FAM SINE Alu 0 175 1 5211 144 82 17 chr3 16727219 16727753 -201309405 - L1MA8 LINE L1 -1607 4539 3906 244 200 0 17 chr3 16727725 16727785 -201309373 - L1MB7 LINE L1 -2446 3700 3642 * 3586 217 44 8 chr3 16727796 16728751 -201308407 - L1MB7 LINE L1 -2812 3334 2346 * 4275 234 49 92 chr3 16728744 16729264 -201307894 - L1MEc LINE L1 -1099 5116 4575 236 185 0 19 chr3 16729264 16729318 -201307840 - HSMAR1 DNA Mariner 0 1287 1235 333 43 22 0 chr3 16729327 16729373 -201307785 + MADE1 DNA Mariner 33 79 -1 4275 234 49 92 chr3 16729373 16729446 -201307712 - L1MEc LINE L1 -1648 4567 4492 1649 176 10 23 chr3 16729446 16729747 -201307411 + AluJo SINE Alu 1 297 -15 4275 234 49 92 chr3 16729747 16731136 -201306022 - L1MEc LINE L1 -1723 4492 3116 3397 212 31 42 chr3 16731167 16731632 -201305526 - L1ME1 LINE L1 -84 6082 5613 2584 17 40 7 chr3 16731632 16731928 -201305230 + AluYa5 SINE Alu 1 306 -5 3397 212 31 42 chr3 16731928 16733061 -201304097 - L1ME1 LINE L1 -553 5613 4501 2126 238 125 37 chr3 16733060 16733701 -201303457 - L1MEc LINE L1 -3085 3130 2546 * 2251 96 0 0 chr3 16733701 16734035 -201303123 - AluSg SINE Alu 0 334 1 2126 238 125 37 chr3 16734035 16734490 -201302668 - L1MEc LINE L1 -3669 2546 1944 228 111 0 0 chr3 16734490 16734526 -201302632 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 2126 238 125 37 chr3 16734526 16734680 -201302478 - L1MEc LINE L1 -4271 1944 1805 7375 43 7 0 chr3 16734766 16735834 -201301324 + L1PA5 LINE L1 5066 6139 -15 468 263 203 5 chr3 16736428 16736808 -201300350 - L2 LINE L2 -341 2973 2519 511 277 81 25 chr3 16737347 16737582 -201299576 + MIR SINE MIR 2 249 -13 234 233 79 45 chr3 16738347 16738468 -201298690 + MIR3 SINE MIR 26 154 -54 412 238 10 0 chr3 16738841 16738942 -201298216 - MIR SINE MIR -107 155 54 283 381 15 31 chr3 16738996 16739256 -201297902 - L2 LINE L2 -193 3079 2824 2077 140 10 3 chr3 16739401 16739708 -201297450 - AluSx SINE Alu -3 309 1 326 222 0 37 chr3 16739772 16739853 -201297305 + MER5A DNA MER1_type 32 109 -80 2442 48 20 3 chr3 16740997 16741289 -201295869 - AluY SINE Alu -14 297 1 471 282 106 22 chr3 16741431 16741658 -201295500 + MIR SINE MIR 15 260 -2 22 0 0 0 chr3 16741658 16741680 -201295478 + AT_rich Low_complexity Low_complexity 1 22 0 1284 62 6 50 chr3 16741687 16741890 -201295268 - AluY SINE Alu 0 307 113 34 0 0 0 chr3 16741896 16741930 -201295228 + AT_rich Low_complexity Low_complexity 1 34 0 352 173 120 0 chr3 16741945 16742020 -201295138 - MER103 DNA DNA -79 87 4 288 243 27 135 chr3 16742314 16742536 -201294622 + L2 LINE L2 2992 3189 -83 532 250 54 30 chr3 16743507 16743675 -201293483 - MIR SINE MIR -89 173 2 1399 240 87 57 chr3 16743725 16744164 -201292994 - MER20B DNA MER1_type -1 782 257 1866 134 19 51 chr3 16744164 16744478 -201292680 + AluJb SINE Alu 1 304 -8 1399 240 87 57 chr3 16744478 16744728 -201292430 - MER20B DNA MER1_type -526 257 16 2123 138 0 3 chr3 16745098 16745396 -201291762 + AluSx SINE Alu 1 297 -15 711 146 0 41 chr3 16745406 16745529 -201291629 + FLAM_C SINE Alu 1 118 -25 347 0 0 23 chr3 16745529 16745573 -201291585 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 469 274 41 118 chr3 16745696 16746036 -201291122 + L2 LINE L2 2959 3272 0 225 315 90 0 chr3 16746902 16747013 -201290145 + LTR16C LTR ERVL 189 309 -182 279 316 35 0 chr3 16747121 16747235 -201289923 + MIR SINE MIR 85 202 -60 2209 104 0 25 chr3 16747288 16747604 -201289554 + AluSx SINE Alu 1 308 -4 2600 62 0 0 chr3 16747626 16747932 -201289226 + AluY SINE Alu 1 306 -5 255 218 218 0 chr3 16747953 16748031 -201289127 + MIR SINE MIR 33 127 -81 1946 147 31 0 chr3 16748057 16748349 -201288809 - AluJo SINE Alu -11 301 1 4068 147 63 92 chr3 16748364 16748545 -201288613 - L1MB7 LINE L1 -10 6174 5989 2214 137 0 20 chr3 16748545 16748889 -201288269 - MER1B DNA MER1_type 0 337 1 4068 147 63 92 chr3 16748889 16749232 -201287926 - L1MB7 LINE L1 -195 5989 5637 492 18 0 0 chr3 16749232 16749289 -201287869 + (CA)n Simple_repeat Simple_repeat 1 57 0 1953 124 14 17 chr3 16749289 16749579 -201287579 + AluJb SINE Alu 1 289 -23 4068 147 63 92 chr3 16749579 16749916 -201287242 - L1MB7 LINE L1 -546 5638 5293 2424 80 3 0 chr3 16749916 16750218 -201286940 - AluY SINE Alu -8 303 1 4068 147 63 92 chr3 16750218 16750269 -201286889 - L1MB7 LINE L1 -891 5293 5281 2197 107 3 3 chr3 16750269 16750568 -201286590 - AluSg SINE Alu -11 299 1 4068 147 63 92 chr3 16750568 16750652 -201286506 - L1MB7 LINE L1 -903 5281 5196 181 244 22 0 chr3 16750800 16750845 -201286313 - MIR SINE MIR -65 143 98 390 287 108 31 chr3 16750987 16751182 -201285976 - MIR SINE MIR -32 230 21 994 219 23 5 chr3 16751617 16751832 -201285326 + MER20 DNA MER1_type 1 219 0 679 48 0 0 chr3 16752000 16752083 -201285075 - AluY SINE Alu -13 298 216 225 0 0 0 chr3 16752137 16752162 -201284996 + (T)n Simple_repeat Simple_repeat 1 25 0 277 286 82 0 chr3 16752273 16752371 -201284787 + L2 LINE L2 3143 3248 -24 1018 176 45 27 chr3 16752488 16752709 -201284449 - MIR SINE MIR -25 237 13 2231 102 3 7 chr3 16752918 16753223 -201283935 + AluSx SINE Alu 1 304 -8 236 306 28 28 chr3 16753393 16753501 -201283657 - MER5B DNA MER1_type -34 144 37 325 282 184 68 chr3 16753586 16753820 -201283338 + L2 LINE L2 3002 3262 -10 246 250 0 0 chr3 16753938 16753998 -201283160 + MIR SINE MIR 112 171 -91 284 224 0 0 chr3 16754725 16754792 -201282366 - MIR SINE MIR -106 156 90 338 342 17 4 chr3 16755087 16755321 -201281837 + L1ME4a LINE L1 4808 5044 -1102 37 23 0 0 chr3 16755691 16755735 -201281423 + AT_rich Low_complexity Low_complexity 1 44 0 1066 288 23 17 chr3 16756486 16756600 -201280558 + L1ME4a LINE L1 5543 5655 -466 1242 185 189 0 chr3 16756600 16756849 -201280309 + AluSx SINE Alu 1 296 -16 1066 288 23 17 chr3 16756849 16757088 -201280070 + L1ME4a LINE L1 5655 5898 -223 238 274 89 40 chr3 16757323 16757447 -201279711 - MIR SINE MIR -48 214 85 516 243 99 0 chr3 16757599 16757751 -201279407 + MIR SINE MIR 96 262 0 1728 148 89 0 chr3 16757930 16758041 -201279117 + AluSx SINE Alu 1 101 -211 206 93 0 23 chr3 16758041 16758084 -201279074 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1728 148 89 0 chr3 16758084 16758243 -201278915 + AluSx SINE Alu 101 295 -17 1351 137 42 54 chr3 16758512 16758632 -201278526 + AluJb SINE Alu 3 123 -189 240 111 0 0 chr3 16758632 16758677 -201278481 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1998 110 3 38 chr3 16758681 16758973 -201278185 - AluSx SINE Alu -30 282 1 1351 137 42 54 chr3 16758973 16759088 -201278070 + AluJb SINE Alu 126 240 -72 274 226 85 19 chr3 16760097 16760203 -201276955 - MER20B DNA MER1_type -657 126 14 1629 200 164 5 chr3 16760411 16760856 -201276302 - L1ME3A LINE L1 -6 6164 5649 829 112 0 0 chr3 16760898 16761005 -201276153 + FLAM_A SINE Alu 19 125 -17 1381 133 5 0 chr3 16761669 16761864 -201275294 - MLT1A1 LTR MaLR 0 365 170 1477 182 16 11 chr3 16761864 16762163 -201274995 - MLT1A1 LTR MaLR 0 365 4 315 277 117 15 chr3 16762542 16762679 -201274479 + MIR SINE MIR 71 221 -41 1989 117 42 3 chr3 16762826 16763109 -201274049 + AluSg SINE Alu 1 294 -16 183 323 184 14 chr3 16764310 16764592 -201272566 + L2 LINE L2 2648 2977 -337 821 83 19 0 chr3 16764690 16764798 -201272360 - AluSp/q SINE Alu -15 298 189 438 261 91 12 chr3 16765043 16765110 -201272048 + MER5A DNA MER1_type 12 72 -117 2446 54 0 54 chr3 16765110 16765423 -201271735 + AluY SINE Alu 3 298 -13 438 261 91 12 chr3 16765423 16765520 -201271638 + MER5A DNA MER1_type 72 189 0 327 356 23 17 chr3 16765520 16765696 -201271462 + L2 LINE L2 3066 3242 -30 1041 180 0 0 chr3 16766874 16767035 -201270123 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16767186 16767211 -201269947 + (CA)n Simple_repeat Simple_repeat 2 26 0 1531 181 14 18 chr3 16767211 16767488 -201269670 - AluSg SINE Alu -17 293 18 239 385 0 0 chr3 16767490 16767586 -201269572 - MIR SINE MIR -115 147 52 412 277 70 76 chr3 16767654 16767997 -201269161 + L2 LINE L2 2921 3261 -11 1109 247 125 23 chr3 16768120 16768652 -201268506 + MLT1L LTR MaLR 1 612 -3 279 326 174 0 chr3 16768744 16768974 -201268184 + L2 LINE L2 3002 3271 -1 309 250 0 0 chr3 16769063 16769131 -201268027 + MIR3 SINE MIR 93 160 -48 222 356 65 37 chr3 16769553 16769769 -201267389 - L2 LINE L2 -235 3037 2816 2179 107 0 3 chr3 16770400 16770731 -201266427 + AluSx SINE Alu 1 312 0 218 222 37 19 chr3 16770754 16770808 -201266350 + MIR3 SINE MIR 150 204 -4 4352 153 27 10 chr3 16770876 16771643 -201265515 - L1MC1 LINE L1 -9 6324 5545 2573 225 25 0 chr3 16771653 16772258 -201264900 - L1MC1 LINE L1 -1010 5136 4517 828 314 127 12 chr3 16772442 16772892 -201264266 - L2 LINE L2 0 3272 2783 451 323 120 5 chr3 16772915 16773107 -201264051 - MIR SINE MIR -28 234 21 900 230 31 5 chr3 16773658 16773854 -201263304 + MIR SINE MIR 31 231 -31 2277 113 0 7 chr3 16773940 16774242 -201262916 - AluSx SINE Alu -12 300 1 2206 108 0 0 chr3 16774394 16774694 -201262464 - AluSc SINE Alu 0 300 1 334 267 0 0 chr3 16774851 16774926 -201262232 + MIR3 SINE MIR 111 185 -23 576 122 20 20 chr3 16775283 16775381 -201261777 + MER4A LTR ERV1 1 98 -566 1750 131 9 25 chr3 16775382 16775732 -201261426 + MER4A LTR ERV1 262 664 0 602 152 0 0 chr3 16775937 16776036 -201261122 - AluSp/q SINE Alu 0 313 215 1714 179 42 27 chr3 16776036 16776488 -201260670 + LTR10B LTR ERV1 1 547 0 2279 211 63 32 chr3 16776488 16777247 -201259911 + LTR10B-int LTR ERV1 4 846 -6061 2094 249 11 8 chr3 16777282 16777803 -201259355 + LTR10B-int LTR ERV1 1114 1636 -5013 * 4873 113 33 19 chr3 16777797 16778583 -201258575 + LTR10B-int LTR ERV1 1871 2667 -3982 * 4949 276 57 42 chr3 16778568 16780383 -201256775 + LTR10B-int LTR ERV1 3124 4966 -2819 1777 234 31 0 chr3 16780433 16780821 -201256337 + BaEV-int LTR ERV1 4229 4628 -2021 2440 41 3 57 chr3 16780857 16781174 -201255984 + AluY SINE Alu 1 300 -11 1824 158 10 10 chr3 16781175 16781473 -201255685 + AluSx SINE Alu 1 298 -14 956 182 161 108 chr3 16781588 16781874 -201255284 - AluJo SINE Alu -1 301 1 180 0 0 0 chr3 16782140 16782160 -201254998 + (A)n Simple_repeat Simple_repeat 1 20 0 308 337 16 41 chr3 16782291 16782537 -201254621 - MLT1L LTR MaLR -228 387 148 483 264 91 8 chr3 16782620 16782741 -201254417 + L2 LINE L2 3183 3313 0 226 245 19 0 chr3 16782750 16782803 -201254355 - MLT1L LTR MaLR -560 55 2 21 0 0 0 chr3 16784664 16784685 -201252473 + AT_rich Low_complexity Low_complexity 1 21 0 319 315 73 31 chr3 16784872 16785132 -201252026 + MARNA DNA Mariner 61 331 -255 477 287 30 12 chr3 16785232 16785396 -201251762 - MIR SINE MIR -46 216 50 1889 174 0 0 chr3 16785454 16785752 -201251406 + AluSx SINE Alu 1 298 -14 250 295 32 0 chr3 16785880 16785975 -201251183 + MARNA DNA Mariner 478 575 -11 189 338 14 27 chr3 16786708 16786782 -201250376 + L2 LINE L2 3174 3246 -26 447 206 82 106 chr3 16786796 16786966 -201250192 - MIR SINE MIR -10 252 87 1869 169 3 0 chr3 16787304 16787586 -201249572 + AluJb SINE Alu 1 286 -26 216 0 0 0 chr3 16787586 16787610 -201249548 + (AAATG)n Simple_repeat Simple_repeat 2 25 0 1869 169 3 0 chr3 16787610 16787634 -201249524 + AluJb SINE Alu 286 308 -4 1669 191 86 19 chr3 16788190 16788561 -201248597 - MSTD LTR MaLR 0 396 1 680 226 21 56 chr3 16789049 16789060 -201248098 - L1ME2 LINE L1 0 6184 6174 2342 116 0 3 chr3 16789060 16789371 -201247787 + AluSx SINE Alu 1 310 -2 680 226 21 56 chr3 16789371 16789584 -201247574 - L1ME2 LINE L1 -10 6174 5958 2995 146 86 36 chr3 16789586 16789804 -201247354 + MER41B LTR ERV1 1 207 -428 718 122 7 108 chr3 16789804 16789952 -201247206 + FLAM_C SINE Alu 1 133 0 2995 146 86 36 chr3 16789952 16790093 -201247065 + MER41B LTR ERV1 207 340 -295 2310 115 0 3 chr3 16790093 16790397 -201246761 + AluSx SINE Alu 1 303 -9 2995 146 86 36 chr3 16790397 16790462 -201246696 + MER41B LTR ERV1 340 400 -235 2080 151 0 0 chr3 16790462 16790766 -201246392 + AluSx SINE Alu 1 304 -8 2995 146 86 36 chr3 16790766 16790819 -201246339 + MER41B LTR ERV1 400 449 -186 2217 126 3 3 chr3 16790819 16791129 -201246029 - AluSx SINE Alu -2 310 1 2995 146 86 36 chr3 16791129 16791253 -201245905 + MER41B LTR ERV1 449 635 0 271 218 140 2 chr3 16791253 16791353 -201245805 - L1ME2 LINE L1 -205 5959 5848 250 240 0 0 chr3 16791531 16791581 -201245577 + MER92B LTR ERV1 1 50 -586 2199 117 27 0 chr3 16791599 16791872 -201245286 + AluSx SINE Alu 1 265 -47 282 29 0 0 chr3 16791872 16791907 -201245251 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 306 0 0 0 chr3 16791906 16791940 -201245218 + (CA)n Simple_repeat Simple_repeat 1 34 0 2199 117 27 0 chr3 16791907 16791964 -201245194 + AluSx SINE Alu 265 306 -6 578 144 48 0 chr3 16791964 16792068 -201245090 - MER41A LTR ERV1 -12 542 434 2210 114 7 3 chr3 16792068 16792375 -201244783 + AluSx SINE Alu 1 308 -4 586 143 0 51 chr3 16792375 16792473 -201244685 + AluSg/x SINE Alu 106 198 -112 988 101 7 0 chr3 16792482 16792621 -201244537 + AluSg/x SINE Alu 173 312 0 3055 159 8 6 chr3 16792622 16793138 -201244020 - MER41B LTR ERV1 -118 517 1 2365 110 0 3 chr3 16793161 16793471 -201243687 + AluSq SINE Alu 1 309 -4 2566 81 0 0 chr3 16793471 16793780 -201243378 + AluY SINE Alu 1 309 -2 1927 159 0 0 chr3 16793785 16794075 -201243083 + AluJo SINE Alu 2 291 -21 282 329 0 5 chr3 16794344 16794554 -201242604 - AluSp SINE Alu -94 209 1 2113 207 34 71 chr3 16794788 16795176 -201241982 - L1MC5 LINE L1 -140 7821 7420 1695 175 46 0 chr3 16795176 16795461 -201241697 + AluJo SINE Alu 1 298 -14 2113 207 34 71 chr3 16795461 16795583 -201241575 - L1MC5 LINE L1 -541 7420 7295 1348 211 6 30 chr3 16795583 16795915 -201241243 + MER33 DNA MER1_type 1 324 0 2113 207 34 71 chr3 16795915 16796147 -201241011 - L1MC5 LINE L1 -666 7295 7106 362 282 102 53 chr3 16796168 16796374 -201240784 + L2 LINE L2 3027 3242 -71 367 281 47 31 chr3 16796424 16796552 -201240606 + MIR3 SINE MIR 3 132 -76 331 259 12 0 chr3 16797169 16797254 -201239904 - MIR SINE MIR -114 148 63 353 273 13 0 chr3 16797270 16797347 -201239811 - L2 LINE L2 0 3272 3195 2586 86 28 25 chr3 16797464 16797826 -201239332 - THE1B LTR MaLR 0 364 2 341 241 125 0 chr3 16798030 16798142 -201239016 - L2 LINE L2 -3 3310 3185 352 274 28 57 chr3 16798157 16798263 -201238895 + MER91C DNA MER1_type 36 138 -2 462 210 68 56 chr3 16798267 16798429 -201238729 - L2 LINE L2 -123 3190 3027 234 222 42 0 chr3 16798465 16798537 -201238621 - LTR33 LTR ERVL -54 467 393 428 256 61 22 chr3 16798625 16798805 -201238353 - LTR33 LTR ERVL -308 213 27 842 260 131 26 chr3 16799017 16799479 -201237679 - L2 LINE L2 -316 2997 2479 3059 112 0 18 chr3 16799479 16799915 -201237243 + MSTC LTR MaLR 1 428 0 842 260 131 26 chr3 16799915 16799944 -201237214 - L2 LINE L2 -834 2479 2454 555 198 55 93 chr3 16800099 16800356 -201236802 + L1MC5 LINE L1 7670 7916 -45 2203 103 0 3 chr3 16800384 16800727 -201236431 + AluSx SINE Alu 1 312 0 218 222 37 19 chr3 16800750 16800804 -201236354 + MIR3 SINE MIR 150 204 -4 4352 153 27 10 chr3 16800872 16801639 -201235519 - L1MC1 LINE L1 -9 6324 5545 2573 225 25 0 chr3 16801649 16802254 -201234904 - L1MC1 LINE L1 -1010 5136 4517 828 314 127 12 chr3 16802438 16802888 -201234270 - L2 LINE L2 0 3272 2783 451 323 120 5 chr3 16802911 16803103 -201234055 - MIR SINE MIR -28 234 21 900 230 31 5 chr3 16803654 16803850 -201233308 + MIR SINE MIR 31 231 -31 2368 90 7 3 chr3 16803936 16804235 -201232923 - AluSg SINE Alu -10 300 1 2237 108 0 10 chr3 16804391 16804687 -201232471 - AluSx SINE Alu -14 298 6 397 274 222 19 chr3 16804827 16805045 -201232113 - MIR SINE MIR -1 261 5 272 291 68 86 chr3 16805027 16805481 -201231677 - L2 LINE L2 -20 3252 2807 * 360 310 16 82 chr3 16805516 16805557 -201231601 + MIR SINE MIR 12 54 -208 2416 63 3 20 chr3 16805557 16805859 -201231299 + AluY SINE Alu 1 297 -14 360 310 16 82 chr3 16805859 16806001 -201231157 + MIR SINE MIR 54 183 -79 2062 148 7 3 chr3 16806417 16806722 -201230436 - AluSx SINE Alu -6 306 1 441 324 97 15 chr3 16806798 16807128 -201230030 - L1ME4a LINE L1 -78 6043 5687 337 273 86 0 chr3 16807138 16807277 -201229881 - L1ME4a LINE L1 -471 5650 5500 1664 173 14 51 chr3 16807377 16807672 -201229486 - AluJo SINE Alu -23 289 6 735 216 37 32 chr3 16807830 16808020 -201229138 - MLT1A2 LTR MaLR 0 374 184 208 175 25 0 chr3 16808052 16808092 -201229066 - MIR SINE MIR -109 153 113 368 293 186 30 chr3 16808266 16808380 -201228778 + MIR SINE MIR 14 109 -153 1939 145 7 13 chr3 16808380 16808683 -201228475 + AluJb SINE Alu 1 301 -11 368 293 186 30 chr3 16808683 16808771 -201228387 + MIR SINE MIR 109 248 -14 1978 165 0 3 chr3 16808780 16809083 -201228075 + AluJb SINE Alu 1 302 -10 690 287 120 57 chr3 16809213 16809579 -201227579 - L2 LINE L2 0 3313 2925 326 241 131 44 chr3 16810125 16810262 -201226896 + MER5A DNA MER1_type 3 151 -38 193 235 0 0 chr3 16810995 16811029 -201226129 + MIR SINE MIR 3 36 -226 1355 252 95 32 chr3 16811036 16811565 -201225593 + L2 LINE L2 2741 3313 0 315 167 61 15 chr3 16811585 16811651 -201225507 + MIR SINE MIR 56 124 -138 1032 169 144 121 chr3 16811698 16812046 -201225112 - MLT1A1 LTR MaLR -6 359 4 190 281 18 0 chr3 16812050 16812107 -201225051 + MIR SINE MIR 199 256 -6 243 0 0 0 chr3 16812869 16812896 -201224262 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 345 289 89 39 chr3 16813031 16813211 -201223947 + MER117 DNA MER1_type 3 191 -6 2297 123 3 0 chr3 16813700 16814010 -201223148 - AluSx SINE Alu -1 311 1 369 223 190 58 chr3 16814074 16814195 -201222963 + MER5A DNA MER1_type 32 168 -21 253 360 117 14 chr3 16814705 16814919 -201222239 - L2 LINE L2 -508 2806 2571 312 306 48 68 chr3 16815603 16815897 -201221261 - L1M2a LINE L1 -5792 1376 1089 435 263 25 17 chr3 16816501 16816619 -201220539 + L2 LINE L2 3192 3310 -3 308 355 0 0 chr3 16816968 16817078 -201220080 + MIR SINE MIR 137 246 -16 294 300 78 0 chr3 16817798 16817888 -201219270 + MIR SINE MIR 25 121 -87 279 0 0 0 chr3 16818452 16818483 -201218675 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 258 32 0 0 chr3 16818908 16818939 -201218219 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 470 279 78 70 chr3 16818939 16819197 -201217961 - L2 LINE L2 -13 3259 3000 884 225 57 33 chr3 16819303 16819547 -201217611 - MIR SINE MIR -2 260 11 184 209 90 45 chr3 16819664 16819731 -201217427 - L2 LINE L2 -559 2755 2686 189 162 68 122 chr3 16820007 16820081 -201217077 - L2 LINE L2 -1823 1491 1422 225 0 0 0 chr3 16820122 16820147 -201217011 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 337 283 75 0 chr3 16820268 16820374 -201216784 + L2 LINE L2 2543 2656 -658 385 257 55 0 chr3 16820376 16820485 -201216673 + MIR SINE MIR 97 211 -51 225 170 234 43 chr3 16821798 16821892 -201215266 + LTR33 LTR ERVL 47 158 -363 376 208 115 0 chr3 16822567 16822663 -201214495 + MIR SINE MIR 123 229 -33 1894 272 71 31 chr3 16823185 16823731 -201213427 + L1M4 LINE L1 3532 4136 -2010 2327 117 0 0 chr3 16823731 16824031 -201213127 - AluSx SINE Alu -12 300 1 1894 272 71 31 chr3 16824031 16824459 -201212699 + L1M4 LINE L1 4136 4545 -1601 259 317 165 18 chr3 16824514 16824678 -201212480 + MIR SINE MIR 35 222 -40 451 198 77 0 chr3 16824840 16824931 -201212227 - MIR SINE MIR -71 191 94 341 336 107 0 chr3 16824939 16825061 -201212097 - L2 LINE L2 0 3272 3138 256 303 0 56 chr3 16825060 16825149 -201212009 - MIR SINE MIR -166 96 13 * 216 243 162 88 chr3 16825715 16825863 -201211295 - MIR SINE MIR -72 190 32 277 277 59 30 chr3 16826099 16826200 -201210958 - MIR3 SINE MIR -47 161 58 705 315 42 4 chr3 16826236 16826474 -201210684 - MIR SINE MIR -10 252 6 529 243 81 27 chr3 16826987 16827135 -201210023 + MIR SINE MIR 35 190 -72 332 208 42 21 chr3 16827908 16828004 -201209154 + MIR SINE MIR 57 154 -108 615 159 188 7 chr3 16828243 16828381 -201208777 + L1M4 LINE L1 5493 5655 -529 1422 164 13 51 chr3 16828406 16828717 -201208441 - AluJb SINE Alu -9 303 5 935 199 52 47 chr3 16829441 16829652 -201207506 - MIR SINE MIR -32 230 19 218 204 74 0 chr3 16830098 16830152 -201207006 + G-rich Low_complexity Low_complexity 2 59 0 657 244 37 83 chr3 16830506 16830748 -201206410 - MIR SINE MIR -24 238 8 422 176 133 46 chr3 16830780 16830931 -201206227 + MIR SINE MIR 8 168 -63 1635 158 7 28 chr3 16830949 16831234 -201205924 + AluJo SINE Alu 1 279 -33 1096 300 101 17 chr3 16831278 16831804 -201205354 - MLT1K LTR MaLR -15 573 4 390 261 11 0 chr3 16831805 16831893 -201205265 + MIR SINE MIR 159 247 -15 248 237 99 153 chr3 16831947 16832078 -201205080 - MIR3 SINE MIR -48 160 37 315 247 13 13 chr3 16832538 16832615 -201204543 + L1ME4a LINE L1 6043 6119 -2 187 340 160 0 chr3 16832835 16832929 -201204229 + MIR3 SINE MIR 73 181 -27 336 305 42 75 chr3 16833151 16833364 -201203794 - L1ME LINE L1 -5863 207 2 355 252 148 22 chr3 16833374 16833509 -201203649 + L1ME4a LINE L1 5870 6021 -100 186 292 0 0 chr3 16833592 16833640 -201203518 - MIR SINE MIR -113 149 102 208 322 138 0 chr3 16833755 16833842 -201203316 - L2 LINE L2 -50 3222 3124 225 0 0 0 chr3 16833918 16833943 -201203215 + (A)n Simple_repeat Simple_repeat 1 25 0 1311 256 44 46 chr3 16833988 16834399 -201202759 + MLT1J LTR MaLR 100 509 -2 2275 118 10 0 chr3 16834547 16834853 -201202305 - AluSc SINE Alu 0 309 1 699 257 60 49 chr3 16834869 16835093 -201202065 + MIR SINE MIR 5 221 -41 195 250 33 17 chr3 16835325 16835385 -201201773 + MIR SINE MIR 128 188 -74 308 289 128 7 chr3 16835464 16835613 -201201545 - L2 LINE L2 -8 3305 3139 1765 232 107 42 chr3 16836451 16837162 -201199996 + L1ME3 LINE L1 5406 6162 0 307 246 105 35 chr3 16837317 16837431 -201199727 - L2 LINE L2 -219 3053 2932 255 323 122 39 chr3 16837569 16837848 -201199310 - L2 LINE L2 -631 2683 2382 846 118 0 0 chr3 16837852 16837971 -201199187 - AluSg/x SINE Alu -1 308 190 529 163 0 20 chr3 16838147 16838245 -201198913 - L1PB4 LINE L1 -279 5877 5782 336 275 0 44 chr3 16838271 16838362 -201198796 - L1MC4 LINE L1 -1339 6703 6617 307 247 12 0 chr3 16838418 16838503 -201198655 - AluY SINE Alu -135 166 81 517 247 48 12 chr3 16838973 16839139 -201198019 + MER20 DNA MER1_type 8 179 -40 2804 124 13 0 chr3 16839177 16839627 -201197531 - L1P5 LINE L1 -367 5789 5334 196 140 35 53 chr3 16839683 16839740 -201197418 - L2 LINE L2 -337 2976 2921 1003 242 92 84 chr3 16840211 16840595 -201196563 + L2 LINE L2 2649 3044 -269 2138 132 0 3 chr3 16840595 16840890 -201196268 - AluSg SINE Alu -16 294 1 1003 242 92 84 chr3 16840890 16841158 -201196000 + L2 LINE L2 3044 3308 -5 400 274 32 24 chr3 16841186 16841310 -201195848 - MIR SINE MIR -66 142 18 263 295 13 26 chr3 16841382 16841460 -201195698 + MIR3 SINE MIR 15 91 -117 257 284 25 12 chr3 16841566 16841647 -201195511 + MIR SINE MIR 2 83 -179 2311 208 79 12 chr3 16841692 16842197 -201194961 + MLT1F LTR MaLR 4 542 0 460 231 0 28 chr3 16842248 16842356 -201194802 - MIR SINE MIR -71 191 87 180 379 74 0 chr3 16842349 16842444 -201194714 - L2 LINE L2 -89 3183 3082 * 302 247 43 21 chr3 16842746 16842839 -201194319 - MIR SINE MIR -120 142 48 500 308 91 0 chr3 16843359 16843502 -201193656 + MER91A DNA MER1_type 1 156 -40 3121 164 109 71 chr3 16843504 16843943 -201193215 - L1MB7 LINE L1 0 6184 5763 2330 104 0 0 chr3 16843943 16844242 -201192916 + AluSx SINE Alu 1 299 -13 2213 118 7 0 chr3 16844242 16844539 -201192619 + AluSq SINE Alu 6 304 -9 1741 159 0 0 chr3 16844548 16844799 -201192359 + AluJb SINE Alu 1 251 -61 3121 164 109 71 chr3 16844799 16845201 -201191957 - L1MB7 LINE L1 -428 5756 5283 2324 67 3 27 chr3 16845201 16845499 -201191659 + AluY SINE Alu 1 291 -20 3121 164 109 71 chr3 16845499 16845590 -201191568 - L1MB7 LINE L1 -901 5283 5197 187 129 0 0 chr3 16845724 16845755 -201191403 - L2 LINE L2 -17 3255 3225 230 284 65 111 chr3 16845970 16846231 -201190927 + L2 LINE L2 2465 2713 -601 209 172 62 109 chr3 16846859 16846923 -201190235 - MIR3 SINE MIR -43 165 105 310 280 152 15 chr3 16846924 16847056 -201190102 - MER5B DNA MER1_type 0 178 29 2420 87 7 3 chr3 16847423 16847732 -201189426 + AluSx SINE Alu 3 312 0 1910 99 32 35 chr3 16847896 16848180 -201188978 + AluSq SINE Alu 1 283 -30 216 0 0 0 chr3 16848191 16848215 -201188943 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3993 234 95 96 chr3 16848235 16848982 -201188176 + L2 LINE L2 953 1699 -1614 496 212 24 3 chr3 16848982 16849125 -201188033 - MLT1H LTR MaLR -346 203 20 3993 234 95 96 chr3 16849125 16849620 -201187538 + L2 LINE L2 1699 2193 -1120 1978 120 85 0 chr3 16849620 16849903 -201187255 - AluSx SINE Alu -5 307 1 3993 234 95 96 chr3 16849903 16850874 -201186284 + L2 LINE L2 2193 3305 -8 246 265 31 31 chr3 16850925 16851023 -201186135 + (TCCA)n Simple_repeat Simple_repeat 4 101 0 244 322 22 11 chr3 16851087 16851177 -201185981 - L2 LINE L2 -9 3263 3173 4181 33 19 0 chr3 16851224 16851705 -201185453 - LTR2B LTR ERV1 0 490 1 601 250 79 7 chr3 16852044 16852196 -201184962 + MER5B DNA MER1_type 15 177 -1 303 28 0 0 chr3 16852505 16852541 -201184617 + (GA)n Simple_repeat Simple_repeat 1 36 0 302 257 43 0 chr3 16852774 16852844 -201184314 - LTR16B LTR ERVL -6 458 386 325 258 140 0 chr3 16852862 16852955 -201184203 - L2 LINE L2 -33 3239 3134 488 254 23 0 chr3 16853006 16853136 -201184022 + MER94 DNA DNA 1 133 -1 201 375 45 0 chr3 16853147 16853235 -201183923 - L2 LINE L2 -199 3073 2982 3974 142 27 24 chr3 16853559 16853606 -201183552 - L1MB3 LINE L1 -1 6182 6137 2196 116 0 10 chr3 16853606 16853907 -201183251 - AluSx SINE Alu -14 298 1 3974 142 27 24 chr3 16853907 16854570 -201182588 - L1MB3 LINE L1 -46 6137 5470 1431 164 30 43 chr3 16854570 16854874 -201182284 - L1MD2 LINE L1 -2 6357 6057 2462 93 0 0 chr3 16854906 16855207 -201181951 - AluSx SINE Alu -11 301 1 658 176 59 94 chr3 16855235 16855491 -201181667 - L1MC5 LINE L1 -45 7916 7670 856 256 131 26 chr3 16855646 16855675 -201181483 + L2 LINE L2 2454 2479 -834 3056 112 0 18 chr3 16855675 16856111 -201181047 - MSTC LTR MaLR 0 428 1 856 256 131 26 chr3 16856111 16856573 -201180585 + L2 LINE L2 2479 2997 -316 445 250 61 22 chr3 16856786 16856966 -201180192 + LTR33 LTR ERVL 27 213 -308 234 222 42 0 chr3 16857054 16857126 -201180032 + LTR33 LTR ERVL 393 467 -54 462 210 68 56 chr3 16857162 16857324 -201179834 + L2 LINE L2 3027 3190 -123 352 274 28 57 chr3 16857328 16857434 -201179724 + MER91C DNA MER1_type 3 105 -35 341 241 125 0 chr3 16857449 16857561 -201179597 + L2 LINE L2 3185 3310 -3 2573 88 28 25 chr3 16857765 16858127 -201179031 + THE1B LTR MaLR 2 364 0 353 273 13 0 chr3 16858244 16858321 -201178837 + L2 LINE L2 3195 3272 0 331 259 12 0 chr3 16858337 16858422 -201178736 + MIR SINE MIR 63 148 -114 367 281 47 31 chr3 16859039 16859167 -201177991 - MIR3 SINE MIR -76 132 3 344 286 102 53 chr3 16859217 16859423 -201177735 - L2 LINE L2 -71 3242 3027 2336 210 46 70 chr3 16859444 16859676 -201177482 + L1MC5 LINE L1 7106 7342 -619 1348 211 6 30 chr3 16859676 16860008 -201177150 - MER33 DNA MER1_type 0 324 1 2336 210 46 70 chr3 16860008 16860130 -201177028 + L1MC5 LINE L1 7342 7465 -496 1725 171 45 0 chr3 16860130 16860416 -201176742 - AluJo SINE Alu -13 299 1 2336 210 46 70 chr3 16860416 16860892 -201176266 + L1MC5 LINE L1 7465 7917 -44 241 254 51 65 chr3 16861412 16861550 -201175608 + LTR67 LTR ERVL 418 553 -4 181 313 188 0 chr3 16861774 16861886 -201175272 + L2 LINE L2 2178 2310 -1004 298 284 21 106 chr3 16862086 16862322 -201174836 - Charlie8 DNA MER1_type -2192 225 10 406 386 7 0 chr3 16862359 16862504 -201174654 + L2 LINE L2 3109 3254 -18 435 202 0 0 chr3 16862521 16862640 -201174518 + (TGGA)n Simple_repeat Simple_repeat 4 122 0 429 248 66 25 chr3 16863421 16863542 -201173616 - MIR SINE MIR -13 249 124 706 197 45 0 chr3 16863560 16863692 -201173466 + MIR SINE MIR 18 155 -107 688 283 104 10 chr3 16863727 16864142 -201173016 - LTR16C LTR ERVL -7 484 1 2550 68 3 0 chr3 16864180 16864543 -201172615 + AluY SINE Alu 1 311 0 1325 230 71 37 chr3 16864548 16865038 -201172120 + MLT1E2 LTR MaLR 1 505 0 293 274 12 0 chr3 16865038 16865122 -201172036 - MIR SINE MIR -135 127 43 474 264 76 100 chr3 16865224 16865474 -201171684 + MIR SINE MIR 2 245 -17 295 235 183 11 chr3 16865544 16865697 -201171461 - MIR SINE MIR -63 145 4 192 313 122 14 chr3 16865881 16866028 -201171130 - L2 LINE L2 -5 3267 3105 890 244 181 25 chr3 16866161 16866735 -201170423 - L2 LINE L2 -166 3147 2481 854 276 77 13 chr3 16866788 16867099 -201170059 - LTR16C LTR ERVL -14 477 147 991 264 44 34 chr3 16867974 16868447 -201168711 + L1MC/D LINE L1 660 1057 -5148 655 139 0 0 chr3 16868447 16868555 -201168603 + L1MA7 LINE L1 6182 6289 -2 991 264 44 34 chr3 16868555 16868659 -201168499 + L1MC/D LINE L1 1057 1158 -5047 1559 156 4 4 chr3 16868675 16868912 -201168246 + AluSx SINE Alu 3 239 -73 375 265 75 55 chr3 16868961 16869161 -201167997 - Charlie8 DNA MER1_type -2212 205 2 252 204 19 37 chr3 16869173 16869227 -201167931 - L3 LINE CR1 -473 1104 1052 7442 41 15 0 chr3 16869341 16870426 -201166732 - L1PA5 LINE L1 -1 6153 5066 1926 252 115 39 chr3 16870512 16870666 -201166492 + L1MC/D LINE L1 1805 1946 -4269 228 111 0 0 chr3 16870666 16870702 -201166456 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 1926 252 115 39 chr3 16870702 16871157 -201166001 + L1MC/D LINE L1 1946 2365 -3850 2264 96 0 0 chr3 16871157 16871491 -201165667 + AluSg SINE Alu 1 334 0 1926 252 115 39 chr3 16871491 16872132 -201165026 + L1MC/D LINE L1 2365 3130 -3085 * 3068 205 23 39 chr3 16872131 16873264 -201163894 + L1MC/D LINE L1 4570 5678 -743 2524 37 3 56 chr3 16873265 16873588 -201163570 - AluY SINE Alu -5 306 1 1815 234 28 0 chr3 16873624 16874013 -201163145 - LTR10B-int LTR ERV1 -2021 4628 4229 4992 275 57 40 chr3 16874063 16875875 -201161283 - LTR10B-int LTR ERV1 -2819 4966 3124 4873 113 33 19 chr3 16875860 16876646 -201160512 - LTR10B-int LTR ERV1 -3982 2667 1871 * 2094 249 11 8 chr3 16876640 16877161 -201159997 - LTR10B-int LTR ERV1 -5013 1636 1114 * 2279 211 63 32 chr3 16877196 16877955 -201159203 - LTR10B-int LTR ERV1 -6061 588 4 1714 179 42 27 chr3 16877955 16878407 -201158751 - LTR10B LTR ERV1 0 547 1 602 152 0 0 chr3 16878407 16878506 -201158652 + AluSp/q SINE Alu 215 313 0 1750 131 9 25 chr3 16878711 16879061 -201158097 - MER4A LTR ERV1 0 664 262 576 122 20 20 chr3 16879062 16879160 -201157998 - MER4A LTR ERV1 -566 98 1 334 267 0 0 chr3 16879517 16879592 -201157566 - MIR3 SINE MIR -23 185 111 23 33 0 0 chr3 16879709 16879739 -201157419 + AT_rich Low_complexity Low_complexity 1 30 0 2207 108 0 0 chr3 16879749 16880049 -201157109 + AluSc SINE Alu 1 300 0 2478 85 0 19 chr3 16880201 16880518 -201156640 + AluSx SINE Alu 1 311 -1 211 250 27 89 chr3 16880523 16880635 -201156523 - MIR SINE MIR -157 105 1 802 262 113 0 chr3 16881129 16881350 -201155808 - MIR SINE MIR -15 247 2 2212 114 10 0 chr3 16881779 16882076 -201155082 + AluSp SINE Alu 1 300 -13 1397 183 0 20 chr3 16882902 16883148 -201154010 + AluJb SINE Alu 1 241 -71 289 287 119 0 chr3 16884321 16884422 -201152736 + L2 LINE L2 3155 3267 -5 326 344 84 15 chr3 16884445 16884576 -201152582 + L3 LINE CR1 1323 1462 -115 288 314 132 0 chr3 16885515 16885636 -201151522 - MIR SINE MIR -3 259 123 543 236 0 0 chr3 16885682 16885788 -201151370 + MER5A DNA MER1_type 4 109 -80 426 277 142 0 chr3 16885886 16886034 -201151124 + MIR SINE MIR 81 249 -13 193 129 0 0 chr3 16886212 16886243 -201150915 - L2 LINE L2 -214 3058 3028 329 254 116 43 chr3 16886484 16886622 -201150536 - MIR3 SINE MIR -47 161 14 2539 51 0 3 chr3 16886801 16887095 -201150063 + AluY SINE Alu 1 293 -18 404 233 207 33 chr3 16887192 16887342 -201149816 - MIR3 SINE MIR -23 185 10 614 243 7 7 chr3 16887878 16888018 -201149140 - MIR SINE MIR -117 145 6 386 295 34 13 chr3 16888443 16888592 -201148566 + MIR3 SINE MIR 36 187 -21 650 235 173 0 chr3 16889853 16890032 -201147126 + MER63A DNA MER1_type 1 210 0 249 289 23 16 chr3 16890295 16890513 -201146645 + GA-rich Low_complexity Low_complexity 2 312 0 195 261 116 0 chr3 16891370 16891439 -201145719 - MIR3 SINE MIR -49 159 83 233 280 2 0 chr3 16891617 16891690 -201145468 + Charlie8 DNA MER1_type 1357 1417 -1000 1064 182 0 0 chr3 16892178 16892343 -201144815 - AluJb SINE Alu -14 298 134 508 303 164 0 chr3 16892528 16892723 -201144435 + MIR SINE MIR 35 261 -1 2437 85 0 3 chr3 16892803 16893109 -201144049 - AluY SINE Alu -6 305 1 750 235 71 6 chr3 16894176 16894346 -201142812 - MIR SINE MIR -81 181 1 305 294 56 40 chr3 16894508 16894634 -201142524 + MIR SINE MIR 57 184 -78 327 315 174 13 chr3 16894896 16895045 -201142113 + MIR3 SINE MIR 10 182 -26 356 285 41 16 chr3 16895313 16895436 -201141722 - MIR SINE MIR -110 152 27 193 256 151 58 chr3 16895674 16895760 -201141398 + L2 LINE L2 3195 3288 -25 383 291 9 9 chr3 16896414 16896524 -201140634 + MIR SINE MIR 23 132 -130 22 0 0 0 chr3 16896736 16896758 -201140400 + AT_rich Low_complexity Low_complexity 1 22 0 233 230 17 35 chr3 16897060 16897147 -201140011 + MIR SINE MIR 76 163 -58 239 167 62 0 chr3 16897924 16897972 -201139186 + MIR SINE MIR 109 159 -103 342 366 16 21 chr3 16899038 16899224 -201137934 + MIR SINE MIR 38 222 -40 622 264 108 35 chr3 16899301 16899529 -201137629 + MIR SINE MIR 17 262 0 238 209 0 0 chr3 16900628 16900671 -201136487 - MIR SINE MIR -55 153 111 541 264 17 0 chr3 16900681 16900847 -201136311 + MIR SINE MIR 20 187 -50 2253 102 3 0 chr3 16903098 16903439 -201133719 + AluSq SINE Alu 2 313 0 3102 116 53 2 chr3 16903606 16904096 -201133062 + L1PB4 LINE L1 5536 6050 -106 2346 86 3 3 chr3 16904097 16904389 -201132769 + AluSg SINE Alu 2 293 -17 505 305 102 5 chr3 16906055 16906242 -201130916 - MIR SINE MIR -21 241 37 2032 132 51 25 chr3 16906583 16906938 -201130220 - THE1B LTR MaLR 0 364 1 343 188 75 25 chr3 16907770 16907850 -201129308 + MER117 DNA MER1_type 112 195 -2 241 286 36 57 chr3 16907865 16908005 -201129153 - MIR3 SINE MIR -61 147 11 510 238 69 31 chr3 16908076 16908236 -201128922 - L2 LINE L2 -7 3306 3141 394 266 58 40 chr3 16908627 16908800 -201128358 + MER20B DNA MER1_type 1 176 -607 330 80 0 0 chr3 16909805 16909855 -201127303 + (TG)n Simple_repeat Simple_repeat 1 50 0 492 319 14 7 chr3 16910308 16910446 -201126712 - MIR3 SINE MIR -62 146 8 457 269 81 50 chr3 16910627 16910787 -201126371 + MIR SINE MIR 92 256 -6 434 313 0 21 chr3 16911217 16911361 -201125797 + L2 LINE L2 3160 3300 -13 288 231 209 22 chr3 16912544 16912678 -201124480 + MIR SINE MIR 34 192 -70 196 278 0 19 chr3 16912906 16912960 -201124198 - MIR SINE MIR -66 142 90 365 242 131 0 chr3 16913463 16913562 -201123596 - MIR SINE MIR -117 145 34 488 269 0 22 chr3 16913680 16913814 -201123344 - MIR SINE MIR -109 153 23 207 302 94 19 chr3 16914132 16914291 -201122867 - L2 LINE L2 -663 2651 2481 1168 257 158 11 chr3 16914314 16914989 -201122169 + L2 LINE L2 2441 3218 -95 318 329 41 24 chr3 16915024 16915194 -201121964 - L2 LINE L2 -876 2438 2266 * 321 219 106 57 chr3 16915186 16915309 -201121849 + MIR SINE MIR 116 244 -18 538 243 11 37 chr3 16915665 16915854 -201121304 - L1ME4a LINE L1 -4 6117 5934 396 285 91 0 chr3 16916134 16916280 -201120878 - MIR SINE MIR -65 143 36 467 284 58 26 chr3 16916345 16916500 -201120658 - MIR SINE MIR -44 218 59 467 265 163 33 chr3 16916899 16917114 -201120044 + MIR SINE MIR 7 249 -13 2169 178 137 9 chr3 16918185 16918646 -201118512 + MLT2B1 LTR ERVL 1 520 0 591 281 65 23 chr3 16918659 16918876 -201118282 + MIR SINE MIR 20 245 -17 771 167 16 0 chr3 16919060 16919186 -201117972 + AluJb SINE Alu 101 228 -84 538 288 86 58 chr3 16919320 16919563 -201117595 + MIR SINE MIR 13 262 0 219 171 24 0 chr3 16919864 16919905 -201117253 + MIR SINE MIR 89 130 -78 263 86 0 0 chr3 16921062 16921097 -201116061 - MIR SINE MIR -111 151 117 505 271 7 21 chr3 16921282 16921422 -201115736 + MIR SINE MIR 1 138 -124 466 285 23 41 chr3 16921918 16922090 -201115068 - MIR3 SINE MIR -31 177 9 322 312 75 27 chr3 16922842 16923028 -201114130 + MIR SINE MIR 33 227 -35 221 204 0 0 chr3 16923622 16923666 -201113492 - L2 LINE L2 -21 3251 3208 687 236 93 0 chr3 16923681 16923842 -201113316 + MIR SINE MIR 21 196 -66 211 315 0 0 chr3 16924856 16924929 -201112229 + CT-rich Low_complexity Low_complexity 4 76 0 837 275 26 70 chr3 16925867 16926180 -201110978 - L2 LINE L2 -12 3260 2962 941 248 173 15 chr3 16926306 16926717 -201110441 + MLT1K LTR MaLR 1 476 0 1261 201 93 18 chr3 16927372 16927760 -201109398 - MER113 DNA MER1_type? -96 425 9 297 152 0 0 chr3 16927793 16927839 -201109319 - L2 LINE L2 -1 3312 3267 270 314 91 45 chr3 16927874 16928116 -201109042 - L2 LINE L2 -477 2837 2585 212 261 29 72 chr3 16928111 16928180 -201108978 + L2 LINE L2 3207 3272 0 * 473 285 89 6 chr3 16928226 16928384 -201108774 - MIR3 SINE MIR 0 208 38 314 259 33 50 chr3 16928415 16928563 -201108595 - MIR SINE MIR -68 140 1 487 259 177 0 chr3 16929263 16929410 -201107748 + MIR SINE MIR 87 259 -3 216 365 21 10 chr3 16929426 16929522 -201107636 + L2 LINE L2 2960 3056 -216 484 259 98 52 chr3 16929720 16929913 -201107245 + L2 LINE L2 2853 3054 -218 2248 119 0 0 chr3 16929930 16930224 -201106934 - AluSx SINE Alu -18 294 1 362 261 118 25 chr3 16930775 16930854 -201106304 - MIR SINE MIR -61 147 98 724 113 0 0 chr3 16930854 16930960 -201106198 + L1PA5 LINE L1 6046 6151 -3 362 261 118 25 chr3 16930960 16931055 -201106103 - MIR SINE MIR -110 98 13 202 308 42 50 chr3 16930994 16931114 -201106044 + MIR SINE MIR 37 155 -107 * 827 216 145 4 chr3 16931205 16931432 -201105726 - MIR SINE MIR -3 259 1 756 193 0 15 chr3 16931557 16931692 -201105466 + FLAM_C SINE Alu 1 133 0 411 145 0 0 chr3 16931706 16931775 -201105383 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 188 222 42 56 chr3 16931781 16931853 -201105305 + MIR SINE MIR 57 127 -135 1595 257 63 20 chr3 16932228 16932718 -201104440 - L1ME3 LINE L1 0 6162 5652 247 164 36 0 chr3 16932805 16932860 -201104298 - L1ME3 LINE L1 -517 5645 5589 932 233 51 19 chr3 16933337 16933552 -201103606 - MER58A DNA MER1_type -2 222 1 449 247 161 25 chr3 16933561 16933723 -201103435 + MER5A DNA MER1_type 6 189 0 1448 241 47 32 chr3 16933731 16934224 -201102934 - MER113 DNA MER1_type? 0 521 22 276 184 123 105 chr3 16934270 16934384 -201102774 + MIR SINE MIR 21 136 -72 251 246 0 15 chr3 16934505 16934570 -201102588 + LTR16C LTR ERVL 292 355 -136 937 281 121 23 chr3 16934916 16935346 -201101812 - MLT1K LTR MaLR -13 575 104 397 275 56 14 chr3 16935354 16935496 -201101662 - MIR SINE MIR -34 228 81 1578 248 42 10 chr3 16935808 16936216 -201100942 - LTR16C LTR ERVL -7 484 64 189 175 0 0 chr3 16937043 16937083 -201100075 + C-rich Low_complexity Low_complexity 4 43 0 1597 185 43 26 chr3 16937187 16937490 -201099668 + AluJo SINE Alu 1 308 -4 1861 164 40 0 chr3 16937494 16937795 -201099363 + AluSx SINE Alu 1 312 0 231 274 72 85 chr3 16938029 16938252 -201098906 - L1MC/D LINE L1 -1889 5919 5700 2346 87 0 3 chr3 16938369 16938657 -201098501 - AluSq SINE Alu -12 301 15 892 260 78 9 chr3 16938914 16939260 -201097898 + MLT2C1 LTR ERVL 1 370 -27 349 209 132 78 chr3 16939714 16939843 -201097315 - MIR3 SINE MIR -71 137 2 442 191 106 0 chr3 16941076 16941170 -201095988 + MIR SINE MIR 123 226 -36 264 319 150 13 chr3 16941902 16942128 -201095030 + L2 LINE L2 2628 2884 -430 310 252 189 42 chr3 16942276 16942419 -201094739 + L2 LINE L2 3150 3313 0 21 0 0 0 chr3 16942637 16942658 -201094500 + AT_rich Low_complexity Low_complexity 1 21 0 910 279 0 14 chr3 16942666 16942888 -201094270 - MER58A DNA MER1_type -5 219 1 288 53 0 0 chr3 16942944 16942982 -201094176 + (T)n Simple_repeat Simple_repeat 1 38 0 392 335 102 0 chr3 16943798 16943974 -201093184 + MIR3 SINE MIR 15 208 0 216 333 15 0 chr3 16944169 16944235 -201092923 - L2 LINE L2 0 3272 3206 624 299 6 18 chr3 16945113 16945277 -201091881 + MIR3 SINE MIR 28 189 -19 211 147 0 0 chr3 16945414 16945448 -201091710 - L2 LINE L2 -11 3302 3269 594 285 20 0 chr3 16945572 16945723 -201091435 + MIR SINE MIR 57 210 -52 651 254 25 51 chr3 16946614 16946851 -201090307 - MIR SINE MIR -2 260 33 599 198 88 44 chr3 16947465 16947647 -201089511 - Charlie8 DNA MER1_type -2141 276 87 271 251 68 13 chr3 16947781 16947912 -201089246 + MLT1J LTR MaLR 70 213 -233 216 308 106 71 chr3 16948127 16948325 -201088833 - MIR SINE MIR -41 221 17 550 263 127 51 chr3 16948915 16949231 -201087927 + MLT1I LTR MaLR 70 409 0 373 270 116 37 chr3 16949231 16949446 -201087712 - L2 LINE L2 -214 3058 2827 306 309 43 11 chr3 16950036 16950130 -201087028 - L2 LINE L2 -8 3264 3168 325 344 13 33 chr3 16950331 16950482 -201086676 + MER5A DNA MER1_type 40 187 -2 291 140 0 0 chr3 16950928 16950978 -201086180 + (CA)n Simple_repeat Simple_repeat 1 50 0 240 235 0 0 chr3 16951635 16951686 -201085472 - L2 LINE L2 0 3313 3263 543 209 27 0 chr3 16951758 16951868 -201085290 + MIR SINE MIR 52 164 -98 755 292 5 0 chr3 16951874 16952066 -201085092 - MIR SINE MIR -54 208 16 204 292 15 15 chr3 16952214 16952279 -201084879 - L2 LINE L2 -4 3309 3245 351 272 87 3 chr3 16953916 16954025 -201083133 - MIR SINE MIR -63 145 69 2082 139 0 3 chr3 16954025 16954312 -201082846 - AluSx SINE Alu -26 286 1 351 272 87 3 chr3 16954312 16954345 -201082813 - MIR SINE MIR -139 69 40 211 241 74 0 chr3 16955056 16955110 -201082048 - L2 LINE L2 -68 3204 3147 322 302 57 0 chr3 16955167 16955273 -201081885 - MIR SINE MIR -59 203 92 1030 224 47 0 chr3 16955755 16955969 -201081189 - MER58A DNA MER1_type 0 224 1 401 273 30 8 chr3 16956040 16956172 -201080986 - MER103 DNA DNA -18 148 14 3479 179 68 3 chr3 16956189 16956911 -201080247 + L1MB7 LINE L1 5416 6184 0 363 238 67 28 chr3 16957037 16957168 -201079990 - MIR3 SINE MIR -77 131 5 218 261 153 36 chr3 16957960 16958071 -201079087 - MIR SINE MIR -101 161 38 275 296 46 83 chr3 16958572 16958788 -201078370 + MIR SINE MIR 40 247 -15 396 276 73 16 chr3 16959043 16959166 -201077992 - MIR SINE MIR -112 150 21 2371 111 0 0 chr3 16959416 16959714 -201077444 + AluSq SINE Alu 1 298 -15 219 250 0 0 chr3 16960698 16960758 -201076400 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 453 314 222 33 chr3 16961036 16961558 -201075600 - L1MC4a LINE L1 -1614 6194 5574 877 284 174 3 chr3 16961991 16962382 -201074776 + L2 LINE L2 2856 3313 0 352 331 97 23 chr3 16962482 16962657 -201074501 + L2 LINE L2 2919 3106 -166 371 288 130 33 chr3 16962991 16963175 -201073983 - MIR SINE MIR 0 262 61 274 231 0 99 chr3 16963517 16963608 -201073550 - MIR SINE MIR -61 201 120 238 270 20 90 chr3 16963682 16963782 -201073376 - MIR SINE MIR -70 192 100 207 114 0 0 chr3 16963783 16963818 -201073340 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1001 259 101 36 chr3 16963818 16964265 -201072893 - L2 LINE L2 -10 3303 2828 223 341 40 40 chr3 16964385 16964511 -201072647 + L2 LINE L2 3183 3308 -5 204 326 92 31 chr3 16965283 16965381 -201071777 + L3 LINE CR1 1214 1317 -260 247 224 30 0 chr3 16965513 16965580 -201071578 + MER103 DNA DNA 3 71 -95 235 207 329 0 chr3 16966502 16966584 -201070574 - MER5A DNA MER1_type -79 110 2 1291 247 119 43 chr3 16966591 16967288 -201069870 + L1ME3A LINE L1 4477 5226 -920 672 275 121 46 chr3 16967289 16967580 -201069578 + L1ME3A LINE L1 5258 5526 -644 2322 95 14 3 chr3 16967580 16967876 -201069282 - AluSx SINE Alu -13 299 1 672 275 121 46 chr3 16967876 16968232 -201068926 + L1ME3A LINE L1 5526 5947 -223 263 371 41 0 chr3 16968455 16968552 -201068606 - L3 LINE CR1 -15 1562 1462 516 291 102 0 chr3 16968569 16968696 -201068462 + MER91C DNA MER1_type 1 140 0 451 283 186 20 chr3 16968796 16969043 -201068115 - L3 LINE CR1 -86 1491 1204 205 282 65 73 chr3 16969863 16969987 -201067171 + MIR SINE MIR 85 207 -55 204 311 19 47 chr3 16970188 16970294 -201066864 - MIR3 SINE MIR -6 202 100 203 313 30 10 chr3 16970452 16970551 -201066607 + L2 LINE L2 3148 3248 -24 22 0 0 0 chr3 16970995 16971017 -201066141 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 16971084 16971107 -201066051 + AT_rich Low_complexity Low_complexity 1 23 0 466 324 7 0 chr3 16971915 16972060 -201065098 + MER117 DNA MER1_type 5 150 -47 682 301 46 19 chr3 16972206 16972465 -201064693 - MER102b DNA MER1_type -2 339 74 191 342 0 26 chr3 16972565 16972641 -201064517 - MIR3 SINE MIR -132 76 3 246 251 28 70 chr3 16973475 16973594 -201063564 + MIR SINE MIR 95 206 -56 27 0 0 0 chr3 16974681 16974708 -201062450 + AT_rich Low_complexity Low_complexity 1 27 0 228 282 94 17 chr3 16975720 16975837 -201061321 + MIR SINE MIR 92 217 -45 26 30 0 0 chr3 16976392 16976425 -201060733 + GC_rich Low_complexity Low_complexity 1 33 0 384 263 178 13 chr3 16976936 16977088 -201060070 - MER5A DNA MER1_type -6 183 7 398 297 43 49 chr3 16977226 16977411 -201059747 + MIR SINE MIR 79 262 0 324 308 0 33 chr3 16977483 16977574 -201059584 + L2 LINE L2 3172 3259 -13 222 224 0 20 chr3 16977578 16977627 -201059531 + GA-rich Low_complexity Low_complexity 4 51 0 308 335 44 46 chr3 16977859 16978292 -201058866 + L2 LINE L2 1711 2142 -1172 309 309 62 62 chr3 16978311 16978521 -201058637 + MIR SINE MIR 15 224 -38 2234 108 0 0 chr3 16978525 16978831 -201058327 - AluSx SINE Alu -6 306 1 889 179 0 71 chr3 16978904 16979128 -201058030 + AluJo SINE Alu 92 299 -13 2432 61 0 0 chr3 16979430 16979725 -201057433 + AluY SINE Alu 1 295 -16 215 382 15 23 chr3 16979910 16980041 -201057117 + MIR SINE MIR 16 145 -63 802 270 85 0 chr3 16980453 16980664 -201056494 + MIR SINE MIR 2 230 -32 991 105 0 0 chr3 16980858 16980991 -201056167 - AluSq/x SINE Alu -180 133 1 488 270 68 27 chr3 16981066 16981214 -201055944 - MER63A DNA MER1_type 0 210 57 315 306 122 58 chr3 16981397 16981792 -201055366 - L2 LINE L2 -447 2867 2448 485 226 184 42 chr3 16982219 16982387 -201054771 + MLT1J LTR MaLR 3 194 -355 226 184 0 0 chr3 16982602 16982640 -201054518 + MLT1F1 LTR MaLR 495 532 -35 234 246 0 18 chr3 16983243 16983300 -201053858 + MLT1I LTR MaLR 99 154 -395 289 197 231 51 chr3 16983455 16983572 -201053586 + MLT1I LTR MaLR 272 409 0 378 228 195 0 chr3 16983624 16983741 -201053417 - MIR SINE MIR -68 140 38 702 128 0 28 chr3 16983927 16984036 -201053122 + AluJb SINE Alu 2 107 -205 249 309 117 0 chr3 16984326 16984420 -201052738 + MER91C DNA MER1_type 1 105 -35 525 16 0 0 chr3 16984729 16984791 -201052367 + (CA)n Simple_repeat Simple_repeat 1 62 0 360 336 141 37 chr3 16984882 16984973 -201052185 - L2 LINE L2 -22 3250 3170 453 44 0 44 chr3 16984973 16985041 -201052117 + L1PA2 LINE L1 6091 6155 0 360 336 141 37 chr3 16985041 16985276 -201051882 - L2 LINE L2 -102 3170 2890 895 176 68 50 chr3 16985284 16985525 -201051633 + MER33 DNA MER1_type 31 279 -2306 1945 175 48 16 chr3 16985525 16985896 -201051262 + MLT1B LTR MaLR 4 386 -4 895 176 68 50 chr3 16985896 16985932 -201051226 + MER33 DNA MER1_type 279 313 -11 365 294 106 25 chr3 16986601 16986761 -201050397 - MIR SINE MIR -70 192 20 646 243 53 34 chr3 16986824 16987030 -201050128 - MLT1J1 LTR MaLR 0 446 237 576 274 95 37 chr3 16987118 16987359 -201049799 + MLT1J LTR MaLR 205 459 -52 368 185 49 12 chr3 16987375 16987456 -201049702 + MLT1J LTR MaLR 428 511 0 3197 142 8 8 chr3 16987611 16988120 -201049038 - L1MB3 LINE L1 -2 6181 5673 333 227 11 141 chr3 16988168 16988227 -201048931 - MLT1J1 LTR MaLR -285 161 96 2475 182 124 8 chr3 16988227 16988711 -201048447 - MLT1F LTR MaLR -1 541 2 333 227 11 141 chr3 16988711 16988836 -201048322 - MLT1J1 LTR MaLR -350 96 1 451 289 108 0 chr3 16989093 16989259 -201047899 + MIR SINE MIR 2 185 -77 1826 102 48 31 chr3 16989309 16989603 -201047555 - AluY SINE Alu -12 299 1 21 0 0 0 chr3 16989608 16989629 -201047529 + AT_rich Low_complexity Low_complexity 1 21 0 817 170 20 0 chr3 16989645 16989798 -201047360 + Ricksha_a DNA DNA 1 156 -1025 306 186 34 0 chr3 16989783 16989842 -201047316 + ERVL LTR ERVL 5643 5703 -61 * 8521 133 38 37 chr3 16989836 16990154 -201047004 + Ricksha DNA DNA 1690 2006 -1240 2540 7 0 0 chr3 16990154 16990471 -201046687 + AluY SINE Alu 1 317 0 8521 133 38 37 chr3 16990471 16991551 -201045607 + Ricksha DNA DNA 2006 3093 -153 2228 94 0 3 chr3 16991551 16991858 -201045300 - AluY SINE Alu -5 306 1 8521 133 38 37 chr3 16991858 16992006 -201045152 + Ricksha DNA DNA 3093 3239 -7 331 168 103 58 chr3 16992015 16992045 -201045113 + MER113 DNA MER1_type? 71 98 -423 3637 163 31 55 chr3 16992045 16992830 -201044328 - L1MB8 LINE L1 0 6178 5413 331 168 103 58 chr3 16992830 16992954 -201044204 + MER113 DNA MER1_type? 98 232 -289 189 243 29 43 chr3 16993012 16993082 -201044076 + MIR SINE MIR 194 262 0 321 68 0 0 chr3 16993500 16993544 -201043614 + (CAGGG)n Simple_repeat Simple_repeat 2 45 0 274 301 24 0 chr3 16993571 16993654 -201043504 - MIR SINE MIR -89 119 35 743 199 160 0 chr3 16993749 16993905 -201043253 + MER5A DNA MER1_type 3 183 -6 310 344 55 8 chr3 16993932 16994060 -201043098 - L2 LINE L2 -2 3270 3137 5437 190 17 13 chr3 16994268 16994429 -201042729 - L1MA10 LINE L1 0 6334 6175 5838 132 21 29 chr3 16994429 16995573 -201041585 - L1PA15 LINE L1 0 6165 5025 5437 190 17 13 chr3 16995573 16996868 -201040290 - L1MA10 LINE L1 -159 6175 4866 600 279 130 22 chr3 16996872 16997148 -201040010 - L2 LINE L2 0 3313 3008 290 242 16 0 chr3 16997247 16997309 -201039849 + MLT1K LTR MaLR 187 249 -339 535 325 0 6 chr3 16997574 16997731 -201039427 + MIR SINE MIR 49 204 -58 236 369 0 45 chr3 16997731 16997842 -201039316 + L2 LINE L2 3102 3207 -65 692 324 36 12 chr3 16998002 16998252 -201038906 - MIR SINE MIR -1 261 6 639 270 75 4 chr3 16998443 16998669 -201038489 - MIR SINE MIR -6 256 15 458 296 86 7 chr3 16999085 16999237 -201037921 + MIR SINE MIR 82 245 -17 278 270 34 22 chr3 16999421 16999510 -201037648 + MIR SINE MIR 56 145 -117 307 291 92 21 chr3 16999720 16999861 -201037297 + LTR16A LTR ERVL 16 166 -284 269 211 147 21 chr3 16999967 17000062 -201037096 + LTR16A LTR ERVL 344 450 0 850 213 112 0 chr3 17000329 17000526 -201036632 - MER58A DNA MER1_type 0 224 6 417 264 129 18 chr3 17000740 17000903 -201036255 + MER63A DNA MER1_type 30 210 0 331 294 18 18 chr3 17000914 17001077 -201036081 + L2 LINE L2 2920 3082 -190 2686 270 62 26 chr3 17001135 17001963 -201035195 - L1ME3 LINE L1 0 6162 5365 1635 78 0 5 chr3 17001963 17002182 -201034976 - AluY SINE Alu -18 293 76 2686 270 62 26 chr3 17002182 17002206 -201034952 - L1ME3 LINE L1 -797 5365 5343 2425 34 0 59 chr3 17002206 17002526 -201034632 + AluY SINE Alu 1 301 -10 180 0 0 0 chr3 17002532 17002552 -201034606 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2686 270 62 26 chr3 17002552 17003467 -201033691 - L1ME3 LINE L1 -823 5339 4321 498 196 68 42 chr3 17003525 17003699 -201033459 - L1MA10 LINE L1 -2 6332 5990 7922 213 67 41 chr3 17003707 17006727 -201030431 - L1ME1 LINE L1 -321 5845 2750 1354 231 77 39 chr3 17006822 17007329 -201029829 - L1ME3 LINE L1 -2054 4092 3567 181 214 0 43 chr3 17008271 17008341 -201028817 + CT-rich Low_complexity Low_complexity 2 68 0 1276 146 87 80 chr3 17009696 17009984 -201027174 - AluJo SINE Alu -22 290 1 192 262 0 24 chr3 17011031 17011073 -201026085 - MIR SINE MIR -5 257 217 * 271 301 153 68 chr3 17011041 17011277 -201025881 - L2 LINE L2 -20 3252 2997 1219 266 119 7 chr3 17011437 17011899 -201025259 + LTR33 LTR ERVL 1 514 -7 208 341 126 35 chr3 17011954 17012493 -201024665 - L2 LINE L2 -578 2736 2149 1710 175 78 27 chr3 17013700 17014071 -201023087 + MLT1B LTR MaLR 1 390 0 439 226 146 33 chr3 17014304 17014516 -201022642 - MIR SINE MIR -19 243 8 2519 43 0 0 chr3 17015257 17015556 -201021602 + AluY SINE Alu 1 299 -12 488 287 91 48 chr3 17016895 17017125 -201020033 - MIR SINE MIR -2 260 21 623 265 100 22 chr3 17018082 17018312 -201018846 + LTR16C LTR ERVL 244 491 0 264 288 47 34 chr3 17018757 17018916 -201018242 + MIR SINE MIR 34 190 -18 586 252 111 45 chr3 17018936 17019277 -201017881 + MLT1J2 LTR MaLR 45 450 0 695 216 226 19 chr3 17019329 17019537 -201017621 - MIR SINE MIR -11 251 1 206 289 0 0 chr3 17019558 17019603 -201017555 + MIR SINE MIR 206 250 -12 222 274 81 0 chr3 17020753 17020815 -201016343 - MIR SINE MIR -112 150 84 213 308 31 0 chr3 17020858 17020923 -201016235 + MER5B DNA MER1_type 1 67 -111 302 321 28 18 chr3 17021123 17021232 -201015926 - MIR3 SINE MIR -16 192 83 202 258 70 27 chr3 17021846 17021971 -201015187 + MIR SINE MIR 19 147 -61 620 230 86 86 chr3 17022346 17022650 -201014508 - L1ME3A LINE L1 -8 6162 5859 594 215 98 0 chr3 17022647 17022810 -201014348 - L1ME3A LINE L1 -727 5435 5257 * 1098 262 19 22 chr3 17024283 17024596 -201012562 - MLT1I LTR MaLR 0 409 98 473 144 144 0 chr3 17024862 17024966 -201012192 + MER103 DNA DNA 2 120 -46 624 204 32 81 chr3 17025003 17025189 -201011969 + MER5B DNA MER1_type 1 177 -1 290 309 43 21 chr3 17025569 17025663 -201011495 + L2 LINE L2 3161 3256 -16 219 284 46 55 chr3 17026241 17026350 -201010808 - MER5A DNA MER1_type 0 189 82 1678 219 73 2 chr3 17026438 17026889 -201010269 + LTR16C LTR ERVL 1 483 -8 393 271 16 25 chr3 17027321 17027443 -201009715 + Charlie8 DNA MER1_type 103 223 -2194 418 322 82 28 chr3 17028728 17028983 -201008175 - L2 LINE L2 -168 3104 2836 254 198 139 0 chr3 17029206 17029292 -201007866 - MIR SINE MIR -71 137 40 225 224 35 138 chr3 17029718 17029834 -201007324 - MIR3 SINE MIR -47 161 58 192 224 0 0 chr3 17030105 17030172 -201006986 + A-rich Low_complexity Low_complexity 1 67 0 456 280 63 21 chr3 17030303 17030492 -201006666 - MER117 DNA MER1_type 0 197 1 406 242 105 17 chr3 17030542 17030671 -201006487 - MIR SINE MIR -62 146 22 685 306 23 31 chr3 17031715 17031976 -201005182 - MIR SINE MIR -2 260 2 279 345 17 11 chr3 17032154 17032328 -201004830 + MER117 DNA MER1_type 6 180 -17 266 179 291 0 chr3 17032691 17032809 -201004349 - MIR SINE MIR -80 182 23 267 182 0 18 chr3 17032852 17032907 -201004251 + MER5B DNA MER1_type 119 172 -6 428 302 102 8 chr3 17032917 17033181 -201003977 - MIR SINE MIR -19 243 8 293 226 104 43 chr3 17033186 17033301 -201003857 + L1ME2 LINE L1 6041 6162 -2 484 229 49 33 chr3 17033543 17033665 -201003493 + L2 LINE L2 3147 3270 -2 1009 166 13 0 chr3 17034108 17034265 -201002893 + FRAM SINE Alu 2 160 -6 428 221 55 19 chr3 17034719 17034847 -201002311 + MIR SINE MIR 60 191 -62 336 271 35 12 chr3 17034967 17035052 -201002106 + MIR SINE MIR 12 98 -164 233 213 0 21 chr3 17035102 17035149 -201002009 + L2 LINE L2 3217 3262 -10 382 250 30 0 chr3 17035657 17035757 -201001401 - MER5A DNA MER1_type -83 106 4 643 253 110 0 chr3 17036468 17036622 -201000536 - MER5B DNA MER1_type -6 172 2 2603 180 5 0 chr3 17037638 17038060 -200999098 - MSTB LTR MaLR 0 426 3 190 183 49 12 chr3 17038798 17038880 -200998278 + CT-rich Low_complexity Low_complexity 2 86 0 468 265 15 22 chr3 17039163 17039299 -200997859 - L2 LINE L2 0 3272 3138 471 345 113 14 chr3 17039836 17040111 -200997047 + L1ME LINE L1 5517 5818 -303 290 250 217 0 chr3 17040131 17040223 -200996935 - MIR3 SINE MIR -8 200 89 668 213 45 93 chr3 17040509 17040726 -200996432 - MER113 DNA MER1_type? -191 330 104 1786 123 77 0 chr3 17040726 17040986 -200996172 + AluJb SINE Alu 1 280 -32 306 0 0 0 chr3 17040986 17041020 -200996138 + (TAA)n Simple_repeat Simple_repeat 2 35 0 668 213 45 93 chr3 17041020 17041135 -200996023 - MER113 DNA MER1_type? -415 106 13 1143 264 140 5 chr3 17041522 17042186 -200994972 - L2 LINE L2 0 3313 2565 411 296 22 15 chr3 17042503 17042638 -200994520 + L2 LINE L2 3137 3272 0 228 247 0 0 chr3 17042653 17042738 -200994420 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 1362 134 11 22 chr3 17042774 17042801 -200994357 - L1MA9 LINE L1 -17 6161 6135 634 153 9 0 chr3 17042801 17042912 -200994246 - L1MA9 LINE L1 -5 6307 6196 1362 134 11 22 chr3 17042912 17043150 -200994008 - L1MA9 LINE L1 -43 6135 5893 208 328 0 0 chr3 17043601 17043659 -200993499 - MIR SINE MIR -59 149 92 376 246 70 18 chr3 17043676 17043790 -200993368 - L2 LINE L2 -218 3054 2935 218 336 44 26 chr3 17043840 17043953 -200993205 - L2 LINE L2 -468 2846 2732 827 231 99 18 chr3 17043989 17044210 -200992948 + MIR SINE MIR 4 242 -20 206 320 39 39 chr3 17044278 17044381 -200992777 - L2 LINE L2 -606 2708 2606 1036 209 33 9 chr3 17044381 17044591 -200992567 + MER58A DNA MER1_type 8 222 -2 222 227 187 13 chr3 17045370 17045445 -200991713 + MIR SINE MIR 58 145 -117 569 206 44 37 chr3 17045756 17045892 -200991266 - MIR SINE MIR -56 152 16 493 326 62 6 chr3 17046195 17046373 -200990785 + MIR SINE MIR 15 202 -60 201 286 18 0 chr3 17046426 17046482 -200990676 + C-rich Low_complexity Low_complexity 5 61 0 670 261 22 6 chr3 17046856 17047036 -200990122 + MIR SINE MIR 5 187 -75 23 33 0 0 chr3 17047036 17047066 -200990092 + AT_rich Low_complexity Low_complexity 1 30 0 254 229 31 0 chr3 17047098 17047194 -200989964 + (TA)n Simple_repeat Simple_repeat 2 100 0 281 172 40 17 chr3 17047213 17047387 -200989771 + (TA)n Simple_repeat Simple_repeat 2 179 0 303 166 61 31 chr3 17047404 17047567 -200989591 + (TA)n Simple_repeat Simple_repeat 2 169 0 * 334 166 39 72 chr3 17047474 17047655 -200989503 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 217 193 45 45 chr3 17047588 17047764 -200989394 + (TTA)n Simple_repeat Simple_repeat 3 178 0 * 341 195 27 60 chr3 17047710 17047822 -200989336 + (TATAA)n Simple_repeat Simple_repeat 2 107 -73 211 71 48 0 chr3 17047822 17047864 -200989294 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 341 195 27 60 chr3 17047864 17047936 -200989222 + (TATAA)n Simple_repeat Simple_repeat 107 180 0 192 268 109 36 chr3 17049214 17049352 -200987806 + MIR SINE MIR 40 187 -75 219 88 0 0 chr3 17049400 17049434 -200987724 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 793 280 127 26 chr3 17049459 17049970 -200987188 - L2 LINE L2 -58 3255 2677 336 189 0 0 chr3 17050397 17050471 -200986687 + GA-rich Low_complexity Low_complexity 1 74 0 899 199 58 6 chr3 17051069 17051240 -200985918 + MER5A DNA MER1_type 1 180 -9 501 275 14 7 chr3 17051271 17051409 -200985749 + MIR SINE MIR 11 149 -113 537 44 0 0 chr3 17051483 17051551 -200985607 + (ATG)n Simple_repeat Simple_repeat 1 68 0 807 271 152 27 chr3 17051736 17052138 -200985020 - L2 LINE L2 -1 3312 2861 193 304 240 0 chr3 17052153 17052278 -200984880 + MIR SINE MIR 97 251 -11 559 288 6 6 chr3 17052802 17052962 -200984196 + MIR SINE MIR 103 262 0 231 409 83 13 chr3 17053223 17053453 -200983705 + L2 LINE L2 3026 3271 -1 3233 236 53 52 chr3 17054129 17054837 -200982321 - L1MC4 LINE L1 -161 7881 7170 1842 139 10 33 chr3 17054837 17055138 -200982020 - AluJo SINE Alu -18 294 1 3233 236 53 52 chr3 17055138 17055451 -200981707 - L1MC4 LINE L1 -872 7170 6859 348 244 168 8 chr3 17055557 17055676 -200981482 + MIR SINE MIR 10 147 -115 358 64 0 0 chr3 17055929 17055976 -200981182 - L1PA5 LINE L1 -409 5746 5700 3301 36 0 0 chr3 17055976 17056363 -200980795 + L1PA5 LINE L1 5759 6147 -7 230 299 41 52 chr3 17056616 17056713 -200980445 + L2 LINE L2 3161 3256 -16 342 320 36 56 chr3 17057230 17057567 -200979591 + L2 LINE L2 1813 2142 -1172 297 314 62 62 chr3 17057586 17057796 -200979362 + MIR SINE MIR 15 224 -38 2378 113 0 0 chr3 17057797 17058106 -200979052 - AluSx SINE Alu -3 309 1 994 179 0 71 chr3 17058268 17058492 -200978666 + AluJo SINE Alu 92 299 -13 2576 61 0 0 chr3 17058794 17059089 -200978069 + AluY SINE Alu 1 295 -16 226 382 15 23 chr3 17059274 17059405 -200977753 + MIR SINE MIR 16 145 -63 799 270 85 0 chr3 17059817 17060028 -200977130 + MIR SINE MIR 2 230 -32 1057 105 0 0 chr3 17060222 17060355 -200976803 - AluSq/x SINE Alu -180 133 1 448 270 68 27 chr3 17060430 17060578 -200976580 - MER63A DNA MER1_type 0 210 57 342 306 122 58 chr3 17060761 17061156 -200976002 - L2 LINE L2 -447 2867 2448 420 225 175 44 chr3 17061591 17061751 -200975407 + MLT1H LTR MaLR 14 194 -355 255 248 205 26 chr3 17062819 17062936 -200974222 + MLT1I LTR MaLR 272 409 0 378 228 195 0 chr3 17062988 17063105 -200974053 - MIR SINE MIR -68 140 38 679 130 9 28 chr3 17063289 17063397 -200973761 + AluJb SINE Alu 2 107 -205 263 319 117 0 chr3 17063687 17063781 -200973377 - MER91C DNA MER1_type 0 140 36 507 17 0 0 chr3 17064093 17064153 -200973005 + (CA)n Simple_repeat Simple_repeat 1 60 0 391 333 141 37 chr3 17064244 17064335 -200972823 - L2 LINE L2 -22 3250 3170 428 59 0 44 chr3 17064335 17064403 -200972755 + L1PA2 LINE L1 6091 6155 0 391 333 141 37 chr3 17064403 17064638 -200972520 - L2 LINE L2 -102 3170 2890 833 171 84 51 chr3 17064646 17064883 -200972275 + MER33 DNA MER1_type 31 280 -2305 1977 175 48 16 chr3 17064883 17065254 -200971904 + MLT1B LTR MaLR 4 386 -4 833 171 84 51 chr3 17065254 17065290 -200971868 + MER33 DNA MER1_type 280 313 -11 366 294 106 25 chr3 17065959 17066119 -200971039 - MIR SINE MIR -70 192 20 588 243 53 34 chr3 17066182 17066388 -200970770 - MLT1J1 LTR MaLR 0 446 237 525 295 87 29 chr3 17066476 17066717 -200970441 + MLT1J LTR MaLR 205 459 -52 351 185 49 12 chr3 17066733 17066814 -200970344 + MLT1J LTR MaLR 428 511 0 3201 142 8 8 chr3 17066969 17067478 -200969680 - L1MB3 LINE L1 -2 6181 5673 271 299 16 47 chr3 17067527 17067585 -200969573 - MLT1J LTR MaLR -312 199 141 2382 185 121 12 chr3 17067585 17068072 -200969086 - MLT1F LTR MaLR -1 541 2 271 299 16 47 chr3 17068072 17068140 -200969018 - MLT1J LTR MaLR -370 141 77 403 266 42 76 chr3 17068529 17068792 -200968366 - L1M4b LINE L1 -4612 2526 2273 * 1576 224 21 38 chr3 17068760 17069297 -200967861 - L1M4b LINE L1 -5037 1818 1281 2597 71 0 0 chr3 17069297 17069608 -200967550 - AluY SINE Alu 0 311 1 1576 224 21 38 chr3 17069608 17069660 -200967498 - L1M4b LINE L1 -5574 1281 1230 1424 279 23 17 chr3 17069731 17070212 -200966946 - L1M4b LINE L1 -5771 1088 605 392 342 47 29 chr3 17070275 17070550 -200966608 - L1M4b LINE L1 -6283 576 297 4840 82 18 86 chr3 17070696 17071714 -200965444 - L1P LINE L1 -829 5317 4369 * 8298 43 0 1 chr3 17071713 17072710 -200964448 - L1P LINE L1 -1163 4983 3988 2176 113 7 0 chr3 17073658 17073951 -200963207 + AluSx SINE Alu 5 299 -13 2288 115 0 0 chr3 17074250 17074554 -200962604 + AluSx SINE Alu 1 304 -8 357 298 115 34 chr3 17074558 17074793 -200962365 + MIR SINE MIR 9 262 0 1021 206 123 83 chr3 17075299 17075649 -200961509 - MLT1A1 LTR MaLR -1 364 1 30 27 0 0 chr3 17077471 17077508 -200959650 + AT_rich Low_complexity Low_complexity 1 37 0 2971 134 0 7 chr3 17077595 17078035 -200959123 - LTR9B LTR ERV1 0 644 208 565 251 70 20 chr3 17078235 17078434 -200958724 + L1ME LINE L1 5313 5521 -645 * 30980 46 2 3 chr3 17078403 17082778 -200954380 + L1PA3 LINE L1 1524 5892 -263 866 258 57 9 chr3 17083986 17084405 -200952753 - L1MEc LINE L1 -2869 3260 2822 1672 179 188 8 chr3 17084661 17085018 -200952140 + MSTC LTR MaLR 8 428 0 740 278 163 18 chr3 17085022 17085072 -200952086 + MLT1E1 LTR MaLR 89 130 -463 3151 86 32 5 chr3 17085072 17085109 -200952049 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 17085109 17085146 -200952012 + (CA)n Simple_repeat Simple_repeat 2 38 0 3151 86 32 5 chr3 17085146 17085540 -200951618 - MLT2A1 LTR ERVL -34 410 1 740 278 163 18 chr3 17085540 17085766 -200951392 + MLT1E1 LTR MaLR 130 405 -188 802 257 6 6 chr3 17085890 17086069 -200951089 + MLT1E1 LTR MaLR 476 654 0 371 280 36 44 chr3 17086087 17086337 -200950821 - L1MEc LINE L1 -3744 2385 2138 2392 92 0 3 chr3 17086938 17087244 -200949914 - AluY SINE Alu -6 305 1 255 252 31 3 chr3 17087392 17087491 -200949667 - L1MEc LINE L1 -4863 1294 1156 6257 250 55 42 chr3 17087971 17088788 -200948370 - L1MEc LINE L1 -3943 2453 1648 3374 184 37 18 chr3 17088788 17089165 -200947993 - L1MB7 LINE L1 -1 6183 5786 2484 162 18 0 chr3 17089165 17089554 -200947604 - MSTD LTR MaLR 0 396 1 3374 184 37 18 chr3 17089554 17089854 -200947304 - L1MB7 LINE L1 -398 5786 5493 6257 250 55 42 chr3 17089854 17091354 -200945804 - L1MEc LINE L1 -4748 1648 102 291 85 0 0 chr3 17091354 17091401 -200945757 + (TG)n Simple_repeat Simple_repeat 2 48 0 6257 250 55 42 chr3 17091401 17091496 -200945662 - L1MEc LINE L1 -6294 102 10 1743 209 74 19 chr3 17091751 17092172 -200944986 - L1ME3A LINE L1 -9 6161 5718 433 250 8 16 chr3 17092191 17092315 -200944843 - L1ME3A LINE L1 -1120 5026 4904 1929 189 25 27 chr3 17092365 17092560 -200944598 + MLT1A1 LTR MaLR 1 196 -169 2708 90 98 5 chr3 17092560 17092970 -200944188 - LTR7 LTR ERV1 -2 448 1 1929 189 25 27 chr3 17092970 17093140 -200944018 + MLT1A1 LTR MaLR 196 365 0 716 220 54 11 chr3 17093377 17093563 -200943595 + MIR SINE MIR 29 222 -40 764 212 2 22 chr3 17093996 17094358 -200942800 - MLT1G1 LTR MaLR 0 555 140 1412 113 86 0 chr3 17094362 17094583 -200942575 - Tigger2a DNA MER2_type 0 434 195 1267 98 0 6 chr3 17094583 17094747 -200942411 + AluSg/x SINE Alu 133 295 -17 1198 153 0 30 chr3 17094750 17094953 -200942205 - Tigger2a DNA MER2_type -237 197 1 891 240 0 6 chr3 17094958 17095133 -200942025 - MLT1G1 LTR MaLR -421 174 1 402 227 55 0 chr3 17095656 17095766 -200941392 + L1MD3 LINE L1 7879 7994 -1 341 321 53 49 chr3 17095755 17096166 -200940992 - L1MEc LINE L1 -5196 923 511 * 189 291 223 0 chr3 17096391 17096494 -200940664 + MIR SINE MIR 60 185 -77 355 281 10 10 chr3 17096626 17096722 -200940436 + MIR3 SINE MIR 15 110 -98 294 379 23 0 chr3 17096735 17096867 -200940291 - L2 LINE L2 0 3272 3138 1173 163 38 14 chr3 17096904 17097113 -200940045 + MER20 DNA MER1_type 6 219 0 260 224 60 0 chr3 17097235 17097302 -200939856 - L2 LINE L2 -285 2987 2917 254 253 75 124 chr3 17098006 17098192 -200938966 + MER5A DNA MER1_type 7 183 -6 284 323 87 0 chr3 17099066 17099193 -200937965 + MIR SINE MIR 16 153 -55 182 346 25 12 chr3 17100051 17100132 -200937026 + L2 LINE L2 3230 3311 -2 301 267 0 13 chr3 17100614 17100689 -200936469 + L2 LINE L2 3225 3298 -15 377 290 94 37 chr3 17100710 17101007 -200936151 - MLT1I LTR MaLR -18 428 68 289 275 28 55 chr3 17101117 17101338 -200935820 - MIR SINE MIR -30 232 18 315 224 0 0 chr3 17102727 17102803 -200934355 + (CA)n Simple_repeat Simple_repeat 1 76 0 1995 182 14 6 chr3 17102818 17103180 -200933978 + MLT1A1 LTR MaLR 1 365 0 1693 120 25 104 chr3 17103599 17103925 -200933233 - AluYb8 SINE Alu -18 300 1 296 305 51 8 chr3 17104253 17104371 -200932787 - MIR SINE MIR -48 214 92 532 192 120 48 chr3 17104617 17104784 -200932374 + MIR SINE MIR 83 261 -1 1050 63 0 14 chr3 17104956 17105098 -200932060 - L1PA5 LINE L1 0 6154 6015 345 248 30 10 chr3 17105618 17105719 -200931439 - L2 LINE L2 0 3272 3170 191 206 29 0 chr3 17106012 17106080 -200931078 - L2 LINE L2 -404 2909 2840 * 218 279 113 60 chr3 17106078 17106384 -200930774 + L2 LINE L2 2424 2761 -553 1129 179 20 0 chr3 17106384 17106585 -200930573 - MER3 DNA MER1_type 0 209 5 218 279 113 60 chr3 17106585 17106711 -200930447 + L2 LINE L2 2761 2879 -435 258 116 0 0 chr3 17106834 17106877 -200930281 + (TG)n Simple_repeat Simple_repeat 2 44 0 1292 267 82 57 chr3 17106884 17106926 -200930232 - L1MC4a LINE L1 -209 5912 5873 780 171 20 0 chr3 17106926 17107078 -200930080 + L1MB7 LINE L1 6030 6184 0 1292 267 82 57 chr3 17107078 17108202 -200928956 - L1MC4a LINE L1 -248 5873 4741 1369 250 80 6 chr3 17108292 17108656 -200928502 - LTR16C LTR ERVL -13 478 88 190 355 43 48 chr3 17109060 17109291 -200927867 - L3 LINE CR1 -588 989 760 198 203 189 0 chr3 17109799 17109873 -200927285 + MIR SINE MIR 60 147 -115 704 263 61 0 chr3 17109883 17110081 -200927077 - LTR16A1 LTR ERVL -2 455 246 22 0 0 0 chr3 17110438 17110460 -200926698 + AT_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr3 17111540 17111566 -200925592 + (CA)n Simple_repeat Simple_repeat 1 26 0 216 303 17 42 chr3 17111569 17111688 -200925470 - MIR SINE MIR -59 149 34 587 292 72 0 chr3 17111906 17112115 -200925043 + Charlie8 DNA MER1_type 41 264 -2153 633 301 86 63 chr3 17116156 17117028 -200920130 + L2 LINE L2 1880 2771 -543 274 152 22 0 chr3 17117033 17117079 -200920079 - MER3 DNA MER1_type 0 209 163 685 203 38 0 chr3 17117079 17117212 -200919946 - FLAM_C SINE Alu -4 139 2 689 208 84 7 chr3 17117213 17117367 -200919791 - MER3 DNA MER1_type -43 166 1 217 325 149 16 chr3 17117401 17117595 -200919563 + L2 LINE L2 2804 3023 -249 331 109 0 31 chr3 17117604 17117668 -200919490 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 2030 122 71 40 chr3 17117668 17118021 -200919137 + THE1B LTR MaLR 1 364 0 5191 77 20 10 chr3 17118021 17118714 -200918444 + THE1B-int LTR MaLR 1 700 -880 4276 98 2 0 chr3 17118700 17119262 -200917896 + THE1B-int LTR MaLR 1018 1580 0 * 2099 135 72 29 chr3 17119262 17119611 -200917547 + THE1B LTR MaLR 1 364 0 913 131 17 0 chr3 17119625 17119800 -200917358 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 3401 174 41 0 chr3 17120541 17121126 -200916032 + L1MB3 LINE L1 5573 6181 -2 309 314 73 0 chr3 17121645 17121769 -200915389 - MIR SINE MIR -21 241 109 721 315 14 0 chr3 17122025 17122247 -200914911 - MIR SINE MIR -15 247 23 372 269 106 14 chr3 17122256 17122397 -200914761 + L2 LINE L2 3116 3269 -3 274 259 159 59 chr3 17122745 17122915 -200914243 - MER5A DNA MER1_type -1 188 2 534 291 42 12 chr3 17123325 17123490 -200913668 + MER5A DNA MER1_type 20 189 0 368 286 36 0 chr3 17123511 17123623 -200913535 + MER5A DNA MER1_type 4 119 -70 731 235 155 79 chr3 17124576 17125193 -200911965 - L2 LINE L2 -16 3297 2625 312 279 27 0 chr3 17125227 17125338 -200911820 + L2 LINE L2 2896 3009 -263 21501 65 2 1 chr3 17125513 17128405 -200908753 + L1P LINE L1 399 3292 -2854 22119 44 3 1 chr3 17128516 17131667 -200905491 - L1P1 LINE L1 -498 5657 2500 1973 130 0 10 chr3 17134149 17134441 -200902717 - AluJb SINE Alu -23 289 1 384 287 132 12 chr3 17134595 17134762 -200902396 - MIR SINE MIR -64 198 12 7571 44 0 2 chr3 17134822 17136084 -200901074 + L1PA5 LINE L1 4894 6153 -1 2563 261 14 13 chr3 17136084 17136916 -200900242 - L1M4 LINE L1 -2613 3533 2701 269 342 68 27 chr3 17137373 17137636 -200899522 + L1M4 LINE L1 4641 4914 -1232 186 43 0 0 chr3 17138386 17138409 -200898749 + (TG)n Simple_repeat Simple_repeat 1 23 0 267 146 0 0 chr3 17140228 17140283 -200896875 + (TA)n Simple_repeat Simple_repeat 2 56 0 201 227 30 45 chr3 17142310 17142376 -200894782 + MIR3 SINE MIR 107 171 -37 * 297 253 24 48 chr3 17142374 17142500 -200894658 + MIR3 SINE MIR 11 131 -91 390 258 89 8 chr3 17148811 17148935 -200888223 + MIR SINE MIR 48 181 -81 480 45 0 0 chr3 17150661 17150728 -200886430 - AluSp/q SINE Alu -4 309 243 345 280 61 30 chr3 17150762 17150894 -200886264 + MIR SINE MIR 10 145 -117 183 189 0 0 chr3 17151729 17151766 -200885392 - MIR3 SINE MIR -22 186 150 841 271 74 13 chr3 17151927 17152226 -200884932 - MER113 DNA MER1_type? -197 324 8 2100 100 7 0 chr3 17153456 17153761 -200883397 - AluSx SINE Alu 0 307 1 253 260 0 0 chr3 17154154 17154227 -200882931 + MIR SINE MIR 74 146 -62 440 218 12 11 chr3 17154286 17154421 -200882737 + MIR SINE MIR 37 149 -59 445 248 6 64 chr3 17154670 17154827 -200882331 + MIR3 SINE MIR 16 163 -45 245 338 55 7 chr3 17155614 17155759 -200881399 - L1ME4a LINE L1 -9 6112 5961 345 195 18 0 chr3 17156845 17156928 -200880230 + MIR SINE MIR 100 183 -62 289 181 66 0 chr3 17157262 17157344 -200879814 + MIR SINE MIR 36 131 -77 323 325 20 5 chr3 17159993 17160190 -200876968 + L2 LINE L2 1893 2092 -1222 188 274 295 0 chr3 17160950 17161045 -200876113 + L2 LINE L2 3150 3272 0 429 161 74 0 chr3 17161219 17161300 -200875858 - MIR SINE MIR -65 143 57 1963 153 0 6 chr3 17161323 17161637 -200875521 + AluJo SINE Alu 1 312 0 207 261 31 0 chr3 17162397 17162462 -200874696 - MIR SINE MIR -80 128 62 403 277 115 0 chr3 17162868 17162998 -200874160 - MER117 DNA MER1_type -14 183 39 1865 203 80 20 chr3 17163742 17164180 -200872978 + MLT1C LTR MaLR 4 467 0 270 296 98 15 chr3 17164582 17164714 -200872444 + L3 LINE CR1 1336 1478 -99 346 373 26 31 chr3 17165067 17165260 -200871898 - L3 LINE CR1 -16 1561 1370 223 259 0 0 chr3 17165469 17165523 -200871635 - L2 LINE L2 -213 3059 3006 222 248 101 28 chr3 17165516 17165625 -200871533 - L2 LINE L2 -23 3249 3133 * 256 269 45 0 chr3 17165999 17166066 -200871092 + MIR SINE MIR 114 183 -79 198 358 60 7 chr3 17166166 17166317 -200870841 + L2 LINE L2 2899 3057 -215 21 0 0 0 chr3 17166510 17166531 -200870627 + AT_rich Low_complexity Low_complexity 1 21 0 201 289 333 0 chr3 17167389 17167479 -200869679 - MIR3 SINE MIR -52 156 37 352 263 70 7 chr3 17167647 17167800 -200869358 - MIR3 SINE MIR -16 192 24 2708 19 0 6 chr3 17167944 17168257 -200868901 + AluY SINE Alu 1 311 0 372 43 0 0 chr3 17168295 17168341 -200868817 + (TG)n Simple_repeat Simple_repeat 1 46 0 268 286 143 0 chr3 17168366 17168464 -200868694 + MIR SINE MIR 35 146 -62 711 238 119 18 chr3 17168486 17168713 -200868445 - MER112 DNA MER1_type 0 260 11 297 0 0 0 chr3 17169117 17169150 -200868008 + (GA)n Simple_repeat Simple_repeat 1 33 0 220 281 16 16 chr3 17169200 17169264 -200867894 - L2 LINE L2 0 3272 3209 467 296 87 43 chr3 17169322 17169552 -200867606 - MIR SINE MIR -7 255 16 383 313 45 0 chr3 17169616 17169750 -200867408 - MIR3 SINE MIR -7 201 62 305 146 0 0 chr3 17170734 17170782 -200866376 - MIR SINE MIR -75 133 86 746 189 33 50 chr3 17171362 17171542 -200865616 + MER5B DNA MER1_type 2 178 0 293 225 28 0 chr3 17171546 17171617 -200865541 - MIR3 SINE MIR -50 158 86 2084 229 51 15 chr3 17172740 17173285 -200863873 - L1MD2 LINE L1 -9 6350 5786 441 150 12 12 chr3 17173308 17173388 -200863770 - MER116 DNA Mariner 0 80 1 562 128 0 0 chr3 17173392 17173470 -200863688 - AluS SINE Alu -234 78 1 274 233 87 10 chr3 17173493 17173596 -200863562 - L1ME LINE L1 -296 5866 5756 325 331 55 0 chr3 17173772 17173917 -200863241 + L2 LINE L2 2900 3052 -220 264 345 12 0 chr3 17173950 17174034 -200863124 + L2 LINE L2 3188 3272 0 270 226 0 0 chr3 17174634 17174687 -200862471 + MIR3 SINE MIR 116 168 -40 365 245 37 43 chr3 17174945 17175079 -200862079 - L1MCa LINE L1 -1339 6983 2001 3969 155 31 12 chr3 17175838 17176556 -200860602 + L1MB3 LINE L1 5453 6183 0 2029 136 0 13 chr3 17176582 17176898 -200860260 + AluSx SINE Alu 1 312 0 293 361 62 5 chr3 17178136 17178344 -200858814 + L2 LINE L2 2813 3032 -240 180 360 11 22 chr3 17178328 17178417 -200858741 + MIR SINE MIR 60 147 -115 * 281 316 10 41 chr3 17178528 17178626 -200858532 - MIR SINE MIR 0 262 168 276 366 68 14 chr3 17178670 17178893 -200858265 + MIR SINE MIR 17 247 -15 * 548 313 0 0 chr3 17178882 17179032 -200858126 - MIR SINE MIR -100 162 13 330 288 212 0 chr3 17179039 17179157 -200858001 + MIR3 SINE MIR 30 172 -36 472 191 6 24 chr3 17179440 17179608 -200857550 + (TCCA)n Simple_repeat Simple_repeat 2 166 0 941 209 11 7 chr3 17179647 17179939 -200857219 + (TCCA)n Simple_repeat Simple_repeat 1 293 0 196 322 0 0 chr3 17180499 17180558 -200856600 + MIR SINE MIR 63 121 -87 629 227 213 0 chr3 17180637 17180844 -200856314 - MIR SINE MIR 0 262 12 2406 201 87 14 chr3 17182042 17182550 -200854608 + MLT1H LTR MaLR 2 546 -3 320 316 105 0 chr3 17183536 17183669 -200853489 + HAL1b LINE L1 1202 1348 0 246 318 96 44 chr3 17184137 17184378 -200852780 - MIR3 SINE MIR -3 259 11 976 160 16 94 chr3 17184441 17184758 -200852400 + MER33 DNA MER1_type 6 297 -2327 843 146 8 8 chr3 17184758 17184888 -200852270 - FLAM_C SINE Alu -2 131 2 976 160 16 94 chr3 17184888 17184951 -200852207 + MER33 DNA MER1_type 297 363 0 852 241 20 5 chr3 17186067 17186266 -200850892 + Charlie8 DNA MER1_type 72 273 -2144 626 237 39 56 chr3 17186739 17186971 -200850187 + MIR SINE MIR 28 255 -7 222 255 0 0 chr3 17186951 17186998 -200850160 + L2 LINE L2 3264 3310 -3 * 1013 241 70 70 chr3 17187069 17187443 -200849715 - L2 LINE L2 0 3313 2940 299 211 0 0 chr3 17187447 17187504 -200849654 - MIR SINE MIR -67 141 85 358 267 107 7 chr3 17187888 17188038 -200849120 + LTR16A1 LTR ERVL 263 427 -30 312 325 18 0 chr3 17188698 17188812 -200848346 + L2 LINE L2 2658 2773 -541 553 240 91 11 chr3 17188869 17189044 -200848114 - MIR SINE MIR -45 217 29 251 321 0 0 chr3 17189153 17189234 -200847924 - MIR3 SINE MIR -50 158 78 307 89 36 0 chr3 17190764 17190820 -200846338 + GA-rich Low_complexity Low_complexity 2 59 0 371 270 92 25 chr3 17191453 17191616 -200845542 - MIR SINE MIR -28 234 61 341 266 0 81 chr3 17191902 17192026 -200845132 - MIR SINE MIR -46 216 103 22 35 0 0 chr3 17192333 17192362 -200844796 + AT_rich Low_complexity Low_complexity 1 29 0 249 306 0 0 chr3 17192924 17192996 -200844162 + MIR SINE MIR 76 147 -115 1504 178 0 36 chr3 17193076 17193351 -200843807 - AluJo SINE Alu -47 265 1 2052 117 0 32 chr3 17193363 17193672 -200843486 - AluSx SINE Alu -13 299 1 281 160 264 66 chr3 17193959 17194065 -200843093 - MER5A DNA MER1_type -2 187 61 32 31 0 46 chr3 17194065 17194092 -200843066 + AT_rich Low_complexity Low_complexity 1 28 -34 322 44 0 0 chr3 17194092 17194137 -200843021 - L1PA3 LINE L1 0 6155 6111 32 31 0 46 chr3 17194137 17194174 -200842984 + AT_rich Low_complexity Low_complexity 28 62 0 318 256 0 0 chr3 17194174 17194252 -200842906 - MER5A DNA MER1_type -111 78 1 279 227 18 118 chr3 17194372 17194482 -200842676 - MER103 DNA DNA -65 101 3 1009 229 13 34 chr3 17194564 17194800 -200842358 + MIR SINE MIR 20 250 -12 224 291 0 0 chr3 17197585 17197640 -200839518 + (CA)n Simple_repeat Simple_repeat 1 55 0 227 214 18 18 chr3 17199174 17199230 -200837928 + L2 LINE L2 3258 3313 0 952 229 80 82 chr3 17199733 17200122 -200837036 + Charlie4a DNA MER1_type 120 507 -1 2377 147 17 17 chr3 17200396 17200803 -200836355 + L1MB3 LINE L1 5774 6180 -3 390 121 0 0 chr3 17201474 17201540 -200835618 + (TG)n Simple_repeat Simple_repeat 1 66 0 327 266 57 16 chr3 17202208 17202332 -200834826 - MIR3 SINE MIR -77 131 3 398 226 66 44 chr3 17203722 17203859 -200833299 + MIR3 SINE MIR 19 158 -50 232 129 0 113 chr3 17204105 17204167 -200832991 - L2 LINE L2 -93 3179 3125 194 316 218 10 chr3 17204399 17204592 -200832566 - MIR SINE MIR -10 252 20 358 232 36 72 chr3 17205370 17205508 -200831650 - MIR SINE MIR -80 182 50 275 266 124 0 chr3 17206000 17206113 -200831045 + MIR3 SINE MIR 45 171 -37 1167 278 124 2 chr3 17206243 17206661 -200830497 + L1MC4 LINE L1 7574 8042 0 383 295 66 12 chr3 17206706 17206872 -200830286 + Charlie8 DNA MER1_type 32 206 -2211 194 281 207 2 chr3 17207100 17207219 -200829939 - MIR SINE MIR -61 147 9 330 290 0 69 chr3 17207257 17207388 -200829770 - MIR SINE MIR -57 205 84 212 344 52 0 chr3 17207861 17207957 -200829201 - MIR SINE MIR -147 115 15 274 236 251 5 chr3 17207972 17208168 -200828990 - MIR3 SINE MIR -6 256 7 233 329 52 45 chr3 17208773 17208928 -200828230 - L3 LINE CR1 -58 1519 1364 253 325 196 0 chr3 17209192 17209355 -200827803 - L3 LINE CR1 -952 625 431 587 267 198 42 chr3 17210335 17210668 -200826490 + L2 LINE L2 2926 3310 -3 545 324 89 29 chr3 17210689 17211004 -200826154 + L2 LINE L2 2854 3187 -85 364 256 284 4 chr3 17211188 17211455 -200825703 + L2 LINE L2 2682 3023 -290 288 324 37 0 chr3 17211534 17211642 -200825516 + L2 LINE L2 3200 3311 -2 376 248 46 18 chr3 17211700 17211809 -200825349 + L2 LINE L2 3189 3300 -13 799 192 99 16 chr3 17212724 17212906 -200824252 + MER117 DNA MER1_type 1 197 0 548 267 161 14 chr3 17213475 17213692 -200823466 - MIR SINE MIR -1 261 13 311 286 111 8 chr3 17213711 17213837 -200823321 + MIR SINE MIR 77 215 -47 320 268 118 1 chr3 17214058 17214182 -200822976 + MIR SINE MIR 29 163 -62 190 272 40 96 chr3 17214796 17214921 -200822237 - MIR3 SINE MIR -89 119 2 501 276 79 39 chr3 17215390 17215593 -200821565 + MIR SINE MIR 52 262 0 365 270 108 0 chr3 17216041 17216152 -200821006 + MIR SINE MIR 27 149 -113 341 276 45 30 chr3 17216913 17217047 -200820111 + MIR3 SINE MIR 27 162 -46 250 249 58 45 chr3 17217113 17217217 -200819941 - MIR SINE MIR -96 112 7 1773 194 71 0 chr3 17217399 17217723 -200819435 + MER7A DNA MER2_type 2 346 0 243 284 147 43 chr3 17217724 17217946 -200819212 - MIR SINE MIR -13 249 13 206 214 0 14 chr3 17218398 17218468 -200818690 + CT-rich Low_complexity Low_complexity 2 70 0 372 247 43 0 chr3 17218837 17218930 -200818228 - MIR SINE MIR -49 213 117 207 0 0 0 chr3 17219348 17219371 -200817787 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 361 257 9 28 chr3 17219613 17219722 -200817436 + MIR SINE MIR 37 143 -65 545 240 105 1 chr3 17219905 17220070 -200817088 + MIR SINE MIR 16 197 -65 220 121 0 86 chr3 17220356 17220414 -200816744 + (TTTTTA)n Simple_repeat Simple_repeat 2 54 0 220 331 55 24 chr3 17220965 17221092 -200816066 + MER5A DNA MER1_type 33 163 -26 336 207 140 140 chr3 17221099 17221169 -200815989 + MIR SINE MIR 74 143 -119 860 118 0 0 chr3 17221169 17221288 -200815870 - L1PB1 LINE L1 -1 6150 6032 336 207 140 140 chr3 17221288 17221396 -200815762 + MIR SINE MIR 142 252 -10 1188 244 94 39 chr3 17222015 17222453 -200814705 + MLT1C LTR MaLR 6 467 0 379 223 248 6 chr3 17222512 17222669 -200814489 + MIR SINE MIR 9 203 -59 332 309 10 0 chr3 17222661 17222758 -200814400 - L2 LINE L2 0 3313 3216 * 267 331 50 8 chr3 17224111 17224232 -200812926 - L2 LINE L2 0 3272 3147 272 289 13 0 chr3 17224973 17225049 -200812109 + MIR3 SINE MIR 85 161 -47 744 236 63 80 chr3 17225406 17225643 -200811515 - MER102b DNA MER1_type 0 341 109 443 327 138 18 chr3 17226095 17226312 -200810846 + MIR SINE MIR 20 262 0 335 291 39 0 chr3 17226441 17226544 -200810614 + MIR3 SINE MIR 85 191 -17 454 234 135 21 chr3 17226904 17227045 -200810113 + MIR3 SINE MIR 14 170 -38 205 306 45 54 chr3 17227311 17227422 -200809736 + L2 LINE L2 2893 3002 -270 305 309 41 8 chr3 17227424 17227547 -200809611 + Charlie8 DNA MER1_type 9 135 -2282 194 267 22 56 chr3 17227679 17227769 -200809389 + L3 LINE CR1 1298 1384 -193 183 80 0 0 chr3 17227769 17227794 -200809364 + (T)n Simple_repeat Simple_repeat 1 25 0 1648 150 32 35 chr3 17227887 17228395 -200808763 - SVA Other Other -518 868 462 349 284 0 0 chr3 17228650 17228738 -200808420 - L2 LINE L2 0 3313 3226 354 233 29 29 chr3 17230023 17230126 -200807032 + MIR SINE MIR 47 149 -113 328 291 120 75 chr3 17231266 17231377 -200805781 + MIR SINE MIR 19 124 -138 2260 90 0 0 chr3 17231377 17231676 -200805482 - AluSq SINE Alu -14 299 1 328 291 120 75 chr3 17231676 17231798 -200805360 + MIR SINE MIR 124 262 0 718 243 24 0 chr3 17231828 17231997 -200805161 - MER5B DNA MER1_type 0 178 6 648 219 69 0 chr3 17232000 17232160 -200804998 + MER5A DNA MER1_type 17 187 -2 318 209 203 57 chr3 17234105 17234263 -200802895 + MER53 DNA DNA 9 189 0 276 272 128 24 chr3 17234312 17234437 -200802721 - MIR3 SINE MIR -54 154 17 292 330 80 8 chr3 17234751 17234940 -200802218 + MIR3 SINE MIR 37 243 -19 430 315 90 22 chr3 17235181 17235359 -200801799 - MIR SINE MIR -72 190 1 531 287 29 103 chr3 17235657 17235951 -200801207 + L1MC4a LINE L1 5746 6017 -104 2008 116 25 0 chr3 17236023 17236146 -200801012 + AluSx SINE Alu 1 119 -193 219 69 0 0 chr3 17236146 17236175 -200800983 + (TA)n Simple_repeat Simple_repeat 1 29 0 2008 116 25 0 chr3 17236175 17236336 -200800822 + AluSx SINE Alu 119 292 -20 402 283 206 17 chr3 17236448 17236628 -200800530 + MIR SINE MIR 32 245 -17 984 261 96 26 chr3 17236732 17237150 -200800008 + L2 LINE L2 2531 2977 -337 22 35 0 0 chr3 17237252 17237281 -200799877 + AT_rich Low_complexity Low_complexity 1 29 0 277 285 0 26 chr3 17238057 17238181 -200798977 - MIR SINE MIR -72 136 19 214 296 99 0 chr3 17238225 17238306 -200798852 + L2 LINE L2 2306 2394 -920 548 216 41 72 chr3 17239108 17239302 -200797856 + MIR SINE MIR 48 235 -27 216 352 37 28 chr3 17239882 17239990 -200797168 + MIR SINE MIR 93 201 -61 6452 184 74 89 chr3 17240298 17242513 -200794645 + Tigger1 DNA MER2_type 29 2210 -208 407 107 67 27 chr3 17242519 17242594 -200794564 + Tigger1 DNA MER2_type 2340 2417 -1 575 177 0 65 chr3 17242638 17242762 -200794396 + L2 LINE L2 3196 3311 -2 398 239 137 8 chr3 17243123 17243240 -200793918 + MIR SINE MIR 20 151 -111 424 248 71 18 chr3 17244479 17244592 -200792566 + MIR SINE MIR 30 148 -60 514 300 161 15 chr3 17244789 17245049 -200792109 + L2 LINE L2 3015 3312 -1 442 241 73 22 chr3 17245363 17245500 -200791658 - L2 LINE L2 -486 2828 2685 542 260 65 0 chr3 17245539 17245693 -200791465 - MIR SINE MIR -58 204 41 433 243 143 7 chr3 17246056 17246196 -200790962 + MIR SINE MIR 13 171 -91 1862 199 67 0 chr3 17247120 17247523 -200789635 - MER63B DNA MER1_type 0 436 7 399 291 32 51 chr3 17248118 17248276 -200788882 + MIR SINE MIR 3 144 -64 408 289 107 9 chr3 17248327 17248525 -200788633 - MIR SINE MIR -36 226 2 186 338 0 0 chr3 17248625 17248692 -200788466 - MIR SINE MIR -62 146 92 1146 143 12 76 chr3 17248700 17249031 -200788127 + MLT1B LTR MaLR 1 370 -20 365 295 59 7 chr3 17249108 17249246 -200787912 + MIR3 SINE MIR 65 208 0 243 191 0 0 chr3 17249872 17249919 -200787239 - MIR SINE MIR -63 145 99 325 281 11 35 chr3 17250250 17250385 -200786773 - MIR3 SINE MIR -14 194 60 677 120 0 0 chr3 17250748 17250840 -200786318 + AluJb SINE Alu 2 93 -219 * 722 144 10 0 chr3 17250835 17250939 -200786219 - AluSg/x SINE Alu -78 234 130 1402 117 19 0 chr3 17250939 17251145 -200786013 + AluJb SINE Alu 103 312 0 218 349 113 20 chr3 17251524 17251719 -200785439 + L2 LINE L2 2870 3082 -190 569 294 124 5 chr3 17251789 17252007 -200785151 + MIR SINE MIR 16 259 -3 2018 113 51 0 chr3 17252262 17252554 -200784604 - AluSx SINE Alu -4 308 2 197 213 21 0 chr3 17252728 17252775 -200784383 + L2 LINE L2 3266 3313 0 217 257 168 23 chr3 17252836 17252964 -200784194 - MIR SINE MIR -68 140 36 783 225 75 15 chr3 17253812 17254012 -200783146 - MIR SINE MIR 0 262 51 1428 244 68 35 chr3 17254325 17254784 -200782374 + MLT1K LTR MaLR 85 558 -30 377 295 0 0 chr3 17254880 17254988 -200782170 - MIR SINE MIR -63 145 52 217 322 161 0 chr3 17255911 17255998 -200781160 - L2 LINE L2 -1 3271 3171 472 292 29 23 chr3 17256216 17256387 -200780771 - MIR SINE MIR -66 196 25 824 237 106 0 chr3 17257436 17257643 -200779515 - MIR SINE MIR -32 230 2 205 254 0 15 chr3 17257800 17257867 -200779291 - MIR SINE MIR -133 129 64 220 214 0 0 chr3 17257872 17257914 -200779244 - MIR SINE MIR -102 160 119 188 331 61 39 chr3 17258023 17258204 -200778954 + L2 LINE L2 3004 3188 -84 183 303 49 57 chr3 17262117 17262239 -200774919 - MIR SINE MIR -64 144 24 346 305 133 8 chr3 17262316 17262444 -200774714 + MIR SINE MIR 17 160 -102 217 147 0 0 chr3 17262906 17262940 -200774218 - L2 LINE L2 -19 3294 3261 190 345 0 0 chr3 17262988 17263046 -200774112 + L2 LINE L2 3256 3313 0 490 307 61 12 chr3 17263084 17263247 -200773911 - MIR SINE MIR -87 175 5 241 326 15 45 chr3 17263970 17264102 -200773056 + MIR SINE MIR 84 211 -51 * 268 200 55 0 chr3 17264061 17264116 -200773042 - MIR SINE MIR -4 258 201 565 276 86 23 chr3 17264156 17264377 -200772781 + MIR SINE MIR 28 262 0 637 257 63 0 chr3 17264378 17264553 -200772605 - MIR SINE MIR -75 187 2 183 262 0 82 chr3 17264566 17264627 -200772531 + MIR SINE MIR 157 212 -50 713 205 5 0 chr3 17264851 17265076 -200772082 + (TCCA)n Simple_repeat Simple_repeat 1 226 0 185 330 144 8 chr3 17265076 17265194 -200771964 - L2 LINE L2 0 3272 3139 375 323 110 48 chr3 17265810 17266101 -200771057 + L2 LINE L2 2953 3261 -11 210 227 212 0 chr3 17266124 17266190 -200770968 + MIR SINE MIR 84 163 -99 310 234 133 9 chr3 17266423 17266532 -200770626 + MIR SINE MIR 73 192 -62 511 232 19 3 chr3 17266805 17266937 -200770221 + MIR3 SINE MIR 59 194 -14 523 276 111 0 chr3 17267412 17267593 -200769565 + MIR SINE MIR 56 256 -6 359 256 8 0 chr3 17269066 17269199 -200767959 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 260 327 40 0 chr3 17269741 17269842 -200767316 - MIR SINE MIR -93 169 65 211 279 23 78 chr3 17269893 17270022 -200767136 + MIR3 SINE MIR 87 208 0 350 301 133 36 chr3 17270734 17270930 -200766228 - MIR SINE MIR -7 255 41 268 269 32 54 chr3 17272557 17272570 -200764588 + MER5A DNA MER1_type 1 11 -178 267 283 80 18 chr3 17272570 17272683 -200764475 - MER5A DNA MER1_type -1 188 69 716 258 72 27 chr3 17273505 17273726 -200763432 - MIR SINE MIR -1 261 31 192 409 42 7 chr3 17273967 17274288 -200762870 + L2 LINE L2 2889 3223 -90 662 319 75 0 chr3 17274431 17274672 -200762486 - MIR SINE MIR -3 259 1 451 269 8 30 chr3 17275671 17275805 -200761353 + MIR SINE MIR 97 227 -35 233 312 21 0 chr3 17275839 17275932 -200761226 - MIR SINE MIR -68 140 46 410 281 117 82 chr3 17277029 17277310 -200759848 - L3 LINE CR1 -12 1565 1275 336 320 0 10 chr3 17278024 17278127 -200759031 + MIR3 SINE MIR 104 205 -3 205 311 104 49 chr3 17278315 17278479 -200758679 + L2 LINE L2 2932 3104 -168 305 339 35 0 chr3 17278940 17279055 -200758103 - MIR SINE MIR -136 126 8 266 297 54 45 chr3 17279598 17279709 -200757449 - MIR SINE MIR -70 192 81 236 306 12 0 chr3 17279714 17279799 -200757359 + MER96 DNA MER1_type? 5 90 -85 183 281 188 31 chr3 17280058 17280154 -200757004 - L2 LINE L2 -1 3271 3161 765 242 84 5 chr3 17280219 17280418 -200756740 - MIR SINE MIR -1 261 50 246 320 126 0 chr3 17281046 17281149 -200756009 - MIR3 SINE MIR -18 190 75 797 254 21 5 chr3 17281275 17281464 -200755694 - MIR SINE MIR -70 192 1 396 169 0 0 chr3 17282379 17282456 -200754702 + (TG)n Simple_repeat Simple_repeat 2 78 0 294 286 27 34 chr3 17282475 17282622 -200754536 + GA-rich Low_complexity Low_complexity 5 150 0 666 191 7 41 chr3 17282646 17282793 -200754365 + L1MA7 LINE L1 6148 6289 -2 21 36 0 0 chr3 17282793 17282821 -200754337 + AT_rich Low_complexity Low_complexity 1 28 0 2365 32 0 3 chr3 17282826 17283108 -200754050 + AluY SINE Alu 26 306 -5 322 321 179 15 chr3 17283626 17283822 -200753336 + L2 LINE L2 3020 3247 -25 329 313 193 6 chr3 17283866 17284042 -200753116 - MIR SINE MIR -50 212 4 259 242 0 30 chr3 17284238 17284304 -200752854 - L2 LINE L2 0 3272 3209 2028 134 3 0 chr3 17284352 17284642 -200752516 + AluSx SINE Alu 1 291 -21 1814 300 95 9 chr3 17284718 17285532 -200751626 - L2 LINE L2 -338 2976 2093 211 129 0 0 chr3 17286448 17286479 -200750679 - L2 LINE L2 -19 3294 3264 475 272 49 11 chr3 17286487 17286652 -200750506 + MIR SINE MIR 15 147 -61 235 242 152 20 chr3 17286650 17286749 -200750409 - MIR SINE MIR -89 173 62 * 386 305 6 40 chr3 17288191 17288365 -200748793 - L1M4 LINE L1 -999 5147 4980 4236 182 34 3 chr3 17288375 17289483 -200747675 - L1MB3 LINE L1 0 6183 5043 444 315 105 33 chr3 17289514 17289799 -200747359 + L2 LINE L2 2324 2634 -680 1894 125 86 42 chr3 17289799 17290158 -200747000 + THE1C LTR MaLR 1 375 0 444 315 105 33 chr3 17290158 17290177 -200746981 + L2 LINE L2 2634 2650 -664 397 281 14 14 chr3 17290332 17290471 -200746687 + L2 LINE L2 2918 3056 -216 307 283 20 30 chr3 17290667 17290766 -200746392 + L2 LINE L2 3174 3271 -1 1829 133 18 25 chr3 17290816 17291101 -200746057 + AluJo SINE Alu 1 283 -29 385 242 153 0 chr3 17291234 17291358 -200745800 + MIR SINE MIR 108 250 -12 695 311 56 11 chr3 17291716 17291986 -200745172 + L2 LINE L2 2590 2871 -443 736 207 96 15 chr3 17292088 17292286 -200744872 + MLT1K LTR MaLR 375 588 0 1147 265 70 39 chr3 17292296 17292537 -200744621 + L2 LINE L2 2858 3090 -223 2159 100 0 0 chr3 17292537 17292852 -200744306 - AluSx SINE Alu 0 319 5 1147 265 70 39 chr3 17292852 17292964 -200744194 + L2 LINE L2 3090 3197 -116 758 167 0 0 chr3 17292964 17293078 -200744080 + MER81 DNA DNA 1 114 0 1147 265 70 39 chr3 17293078 17293164 -200743994 + L2 LINE L2 3197 3313 0 410 318 91 15 chr3 17293169 17293367 -200743791 - MIR SINE MIR -37 225 13 581 237 61 2 chr3 17293935 17294106 -200743052 - MIR SINE MIR -63 145 14 220 262 33 0 chr3 17294240 17294301 -200742857 - MIR SINE MIR -116 146 84 272 290 105 0 chr3 17294994 17295118 -200742040 + MIR3 SINE MIR 37 173 -35 260 283 151 24 chr3 17295816 17295990 -200741168 + MIR SINE MIR 35 229 -33 435 253 188 0 chr3 17296199 17296353 -200740805 - MIR SINE MIR -21 241 59 247 325 39 0 chr3 17297211 17297288 -200739870 + MIR SINE MIR 119 198 -64 495 48 0 0 chr3 17297312 17297374 -200739784 + (TG)n Simple_repeat Simple_repeat 2 63 0 599 330 149 3 chr3 17297401 17297727 -200739431 + L2 LINE L2 2764 3041 -272 240 35 0 0 chr3 17297727 17297756 -200739402 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2107 88 0 28 chr3 17297757 17298041 -200739117 - AluSx SINE Alu -36 276 1 599 330 149 3 chr3 17298041 17298169 -200738989 + L2 LINE L2 3040 3313 0 264 175 0 0 chr3 17298256 17298319 -200738839 + (CA)n Simple_repeat Simple_repeat 1 63 0 356 248 152 0 chr3 17298580 17298685 -200738473 + L2 LINE L2 3193 3313 0 1206 171 0 8 chr3 17298990 17299465 -200737693 + (TCCA)n Simple_repeat Simple_repeat 1 471 0 842 19 0 9 chr3 17299477 17299582 -200737576 + (TTCC)n Simple_repeat Simple_repeat 1 104 0 1294 244 138 18 chr3 17299703 17300417 -200736741 + L2 LINE L2 2506 3312 -1 417 265 118 0 chr3 17301269 17301405 -200735753 + MIR SINE MIR 77 228 -34 1839 149 23 7 chr3 17301415 17301717 -200735441 - AluSx SINE Alu -4 308 2 2164 116 0 0 chr3 17302244 17302545 -200734613 - AluSq SINE Alu -12 301 1 346 352 33 56 chr3 17302677 17302820 -200734338 + L1ME4a LINE L1 5852 5988 -133 803 208 28 17 chr3 17302820 17302998 -200734160 - MER104 DNA MER2_type 0 180 1 346 352 33 56 chr3 17302998 17303124 -200734034 + L1ME4a LINE L1 5988 6115 -6 282 56 0 0 chr3 17304034 17304070 -200733088 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 804 294 110 19 chr3 17304071 17304688 -200732470 - L2 LINE L2 -13 3300 2624 1018 239 45 4 chr3 17305271 17305518 -200731640 - MIR SINE MIR -2 260 4 233 312 72 0 chr3 17305677 17305770 -200731388 + MIR SINE MIR 64 118 -90 329 313 13 19 chr3 17305845 17305985 -200731173 - MIR SINE MIR -71 137 41 191 256 103 26 chr3 17306321 17306399 -200730759 + MIR3 SINE MIR 82 165 -43 227 231 19 0 chr3 17306407 17306459 -200730699 + MIR SINE MIR 88 140 -68 218 196 0 22 chr3 17306793 17306839 -200730319 - MIR SINE MIR -117 145 101 638 236 138 38 chr3 17307267 17307614 -200729544 + LTR16A1 LTR ERVL 4 385 -72 336 307 92 7 chr3 17307748 17307901 -200729257 - MIR3 SINE MIR -8 200 35 378 282 30 23 chr3 17308304 17308435 -200728723 + MIR3 SINE MIR 14 145 -63 841 255 49 8 chr3 17308518 17308761 -200728397 - MIR SINE MIR -9 253 1 196 380 35 28 chr3 17308775 17308917 -200728241 - MIR SINE MIR -12 250 108 489 277 113 13 chr3 17309178 17309337 -200727821 - MIR SINE MIR -83 179 5 365 323 38 1 chr3 17310006 17310143 -200727015 - MIR SINE MIR -59 149 36 210 264 45 91 chr3 17310173 17310283 -200726875 - MIR SINE MIR -35 227 123 * 238 344 115 13 chr3 17310280 17310437 -200726721 - MIR SINE MIR -10 252 80 411 167 8 125 chr3 17310896 17310948 -200726210 + MIR SINE MIR 47 79 -183 2172 113 3 10 chr3 17310948 17311257 -200725901 - AluSx SINE Alu -5 307 1 411 167 8 125 chr3 17311257 17311324 -200725834 + MIR SINE MIR 79 152 -110 1535 233 51 27 chr3 17311390 17311841 -200725317 + MLT1C LTR MaLR 6 467 0 256 313 85 8 chr3 17311936 17312089 -200725069 - MIR SINE MIR -60 148 20 1424 114 0 0 chr3 17312393 17312586 -200724572 - AluJb SINE Alu -15 297 105 211 326 20 20 chr3 17312760 17312858 -200724300 + MIR3 SINE MIR 99 196 -12 429 262 9 9 chr3 17313352 17313459 -200723699 - MIR SINE MIR -71 137 31 318 284 67 16 chr3 17313508 17313663 -200723495 + MIR3 SINE MIR 32 194 -14 383 274 72 15 chr3 17313874 17314050 -200723108 + MIR SINE MIR 18 214 -48 201 133 0 0 chr3 17316376 17316406 -200720752 + (AAATG)n Simple_repeat Simple_repeat 1 30 0 24 32 0 0 chr3 17316626 17316657 -200720501 + GC_rich Low_complexity Low_complexity 1 31 0 183 100 0 0 chr3 17316748 17316778 -200720380 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 323 323 36 30 chr3 17318768 17318935 -200718223 - MIR SINE MIR -67 195 28 239 299 82 52 chr3 17319077 17319271 -200717887 - L3 LINE CR1 -10 1567 1368 437 261 115 13 chr3 17319289 17319446 -200717712 + L2 LINE L2 2988 3160 -112 294 292 11 22 chr3 17319530 17319619 -200717539 - MIR3 SINE MIR -34 174 87 254 342 59 21 chr3 17320430 17320629 -200716529 - MIR3 SINE MIR -37 171 17 203 281 0 18 chr3 17320824 17320881 -200716277 + MIR SINE MIR 22 77 -185 644 241 48 18 chr3 17321037 17321203 -200715955 + MIR SINE MIR 22 192 -70 600 238 119 16 chr3 17321463 17321648 -200715510 - MIR SINE MIR -6 256 53 542 254 18 37 chr3 17322277 17322494 -200714664 + L2 LINE L2 2847 3059 -213 206 298 0 0 chr3 17323033 17323090 -200714068 - L2 LINE L2 -2 3311 3255 277 252 148 40 chr3 17323232 17323428 -200713730 - MIR SINE MIR -11 251 18 477 0 0 0 chr3 17323697 17323750 -200713408 + (CA)n Simple_repeat Simple_repeat 1 53 0 252 278 11 33 chr3 17323788 17323878 -200713280 - MIR SINE MIR -61 147 60 477 246 15 15 chr3 17324046 17324176 -200712982 + MIR SINE MIR 13 142 -120 793 297 71 51 chr3 17324210 17324715 -200712443 - L2 LINE L2 0 3272 2733 774 263 17 38 chr3 17325224 17325460 -200711698 - MIR SINE MIR -27 235 5 219 199 0 36 chr3 17325774 17325830 -200711328 - MIR3 SINE MIR -49 159 105 614 232 95 38 chr3 17326325 17326536 -200710622 + MIR SINE MIR 21 243 -19 638 287 72 18 chr3 17326877 17327100 -200710058 + MIR SINE MIR 22 256 -6 709 219 137 0 chr3 17327185 17327368 -200709790 - MER63A DNA MER1_type 0 210 3 251 313 16 0 chr3 17328021 17328085 -200709073 + MIR SINE MIR 111 175 -87 207 0 0 0 chr3 17328195 17328218 -200708940 + (TG)n Simple_repeat Simple_repeat 2 24 0 199 268 14 56 chr3 17328626 17328697 -200708461 + MIR3 SINE MIR 115 182 -26 260 310 57 45 chr3 17328817 17329062 -200708096 - MIR SINE MIR -6 256 9 243 247 123 4 chr3 17330083 17330190 -200706968 + MIR SINE MIR 81 147 -61 881 232 100 21 chr3 17330207 17330448 -200706710 - MIR SINE MIR 0 262 3 209 259 121 0 chr3 17330957 17331015 -200706143 - L2 LINE L2 -12 3301 3237 2077 117 52 0 chr3 17331698 17331988 -200705170 - AluSx SINE Alu -7 305 1 192 77 0 0 chr3 17331990 17332016 -200705142 + (T)n Simple_repeat Simple_repeat 1 26 0 188 321 0 0 chr3 17332289 17332345 -200704813 + L3 LINE CR1 422 477 -1100 512 313 77 5 chr3 17333039 17333247 -200703911 - MIR SINE MIR -20 242 20 21 0 0 0 chr3 17333338 17333359 -200703799 + AT_rich Low_complexity Low_complexity 1 21 0 394 269 0 10 chr3 17333545 17333649 -200703509 - MIR SINE MIR -140 122 20 401 228 57 16 chr3 17333934 17334057 -200703101 - MIR SINE MIR -52 210 83 361 347 24 6 chr3 17334069 17334236 -200702922 + MIR SINE MIR 85 254 -8 288 302 52 17 chr3 17334375 17334491 -200702667 - MIR SINE MIR -42 220 101 395 250 9 0 chr3 17335170 17335278 -200701880 + Charlie8 DNA MER1_type 52 160 -2257 836 268 13 34 chr3 17335533 17335768 -200701390 - MIR SINE MIR -31 231 2 589 212 94 18 chr3 17335897 17336067 -200701091 - MIR SINE MIR -60 202 20 290 295 21 0 chr3 17336488 17336583 -200700575 + MIR SINE MIR 46 142 -66 1560 211 0 3 chr3 17336584 17336896 -200700262 - L1MC3 LINE L1 -2 7783 7473 421 219 86 18 chr3 17336928 17337067 -200700091 + L1ME3 LINE L1 6016 6162 0 553 244 16 0 chr3 17337189 17337316 -200699842 + MIR SINE MIR 121 249 -13 352 325 24 7 chr3 17337944 17338081 -200699077 + MIR3 SINE MIR 13 157 -75 183 156 0 0 chr3 17338085 17338117 -200699041 + (TGG)n Simple_repeat Simple_repeat 1 32 0 384 308 31 20 chr3 17338133 17338328 -200698830 - MIR SINE MIR -30 232 36 609 214 77 24 chr3 17338511 17338679 -200698479 - MIR SINE MIR -66 196 20 1634 207 68 22 chr3 17340888 17341332 -200695826 + MLT1C LTR MaLR 4 467 0 284 359 60 18 chr3 17341453 17341620 -200695538 - MIR SINE MIR -9 253 80 702 237 119 23 chr3 17342602 17342821 -200694337 + MIR SINE MIR 19 258 -4 357 252 171 16 chr3 17342908 17343031 -200694127 + MIR SINE MIR 102 243 -19 182 309 149 11 chr3 17343304 17343398 -200693760 + L2 LINE L2 2689 2795 -519 218 160 80 0 chr3 17344139 17344189 -200692969 + MIR SINE MIR 97 150 -112 289 258 0 0 chr3 17344562 17344624 -200692534 - L2 LINE L2 -1 3312 3251 210 232 171 0 chr3 17344647 17344729 -200692429 - MIR SINE MIR -119 143 48 287 289 158 9 chr3 17345703 17345817 -200691341 - MIR SINE MIR -2 260 130 421 255 103 7 chr3 17345897 17346042 -200691116 + MIR SINE MIR 90 248 -14 2131 131 7 7 chr3 17346131 17346436 -200690722 - AluSx SINE Alu -7 305 1 4472 210 84 39 chr3 17346444 17346618 -200690540 - L1MD2 LINE L1 -13 6346 6181 297 0 0 0 chr3 17346618 17346651 -200690507 + (TG)n Simple_repeat Simple_repeat 2 34 0 4472 210 84 39 chr3 17346651 17347753 -200689405 - L1MD2 LINE L1 -178 6181 5130 2140 146 0 3 chr3 17347753 17348061 -200689097 - AluJo SINE Alu -5 307 1 4472 210 84 39 chr3 17348061 17349491 -200687667 - L1MD2 LINE L1 -1229 5130 3531 14148 52 7 0 chr3 17349491 17352114 -200685044 + L1PA5 LINE L1 3520 6158 0 189 274 20 0 chr3 17352118 17352169 -200684989 + MIR SINE MIR 97 148 -114 300 341 71 16 chr3 17352869 17353051 -200684107 - MIR SINE MIR -50 212 21 322 351 127 18 chr3 17353674 17354061 -200683097 + L2 LINE L2 2362 2790 -524 394 285 69 94 chr3 17354118 17354479 -200682679 + L2 LINE L2 2920 3271 -1 250 299 142 30 chr3 17355888 17356022 -200681136 + MIR3 SINE MIR 32 180 -28 445 275 69 0 chr3 17356055 17356186 -200680972 - MIR SINE MIR -77 185 46 499 284 99 6 chr3 17357071 17357233 -200679925 - MIR SINE MIR -72 190 14 744 244 101 52 chr3 17357364 17357712 -200679446 + L2 LINE L2 2911 3275 -38 231 310 180 0 chr3 17357775 17357875 -200679283 - MIR SINE MIR -81 181 64 399 262 71 35 chr3 17358364 17358505 -200678653 - MER5A DNA MER1_type -9 180 35 1254 320 58 66 chr3 17358731 17359274 -200677884 + L3 LINE CR1 709 1244 -333 2266 101 0 10 chr3 17359274 17359582 -200677576 - AluSq SINE Alu -8 305 1 1254 320 58 66 chr3 17359582 17359903 -200677255 + L3 LINE CR1 1244 1566 -11 233 222 283 0 chr3 17360105 17360204 -200676954 + MIR3 SINE MIR 3 129 -79 433 197 13 0 chr3 17360321 17360397 -200676761 - MER81 DNA DNA -37 77 1 293 216 0 102 chr3 17360397 17360485 -200676673 - MER5A DNA MER1_type -102 87 9 389 264 45 51 chr3 17361825 17362003 -200675155 + MIR SINE MIR 41 217 -45 577 217 6 6 chr3 17362245 17362379 -200674779 + GA-rich Low_complexity Low_complexity 2 138 -29 2040 151 0 22 chr3 17362379 17362698 -200674460 + AluJb SINE Alu 1 312 0 577 217 6 6 chr3 17362698 17362729 -200674429 + GA-rich Low_complexity Low_complexity 137 167 0 468 312 85 0 chr3 17363119 17363308 -200673850 + MLT1K LTR MaLR 361 565 -23 955 277 164 14 chr3 17363456 17363976 -200673182 - L1MC4 LINE L1 0 8042 7445 555 254 12 12 chr3 17364140 17364313 -200672845 - L1ME2 LINE L1 -194 5970 5798 552 273 42 106 chr3 17364658 17364988 -200672170 + L2 LINE L2 2924 3232 -40 222 222 0 0 chr3 17365006 17365060 -200672098 + GA-rich Low_complexity Low_complexity 2 55 0 189 0 0 0 chr3 17365386 17365407 -200671751 + (CA)n Simple_repeat Simple_repeat 1 21 0 5125 0 0 0 chr3 17365516 17365728 -200671430 + L1MC1 LINE L1 5449 5632 -701 5125 124 34 6 chr3 17365728 17366574 -200670584 + L1MC1 LINE L1 5449 6318 -15 5125 0 0 0 chr3 17366574 17366683 -200670475 + L1MC1 LINE L1 5632 6318 -15 863 254 40 0 chr3 17366734 17366962 -200670196 - MIR SINE MIR -24 238 2 230 244 130 32 chr3 17366973 17367096 -200670062 + L1ME4a LINE L1 5986 6120 -1 346 252 171 8 chr3 17367499 17367622 -200669536 + MIR SINE MIR 21 163 -99 1254 196 46 0 chr3 17367622 17367882 -200669276 + MLT1E1 LTR MaLR 1 272 -382 1086 185 78 4 chr3 17367933 17368165 -200668993 + MLT1E1 LTR MaLR 405 653 -1 288 203 0 0 chr3 17368512 17368571 -200668587 + L1ME LINE L1 5753 5811 -351 631 168 35 0 chr3 17368838 17368951 -200668207 + L2 LINE L2 3197 3313 0 196 313 38 12 chr3 17369348 17369428 -200667730 + MIR SINE MIR 63 144 -64 2123 177 34 10 chr3 17369691 17370109 -200667049 + MSTA LTR MaLR 1 428 0 186 43 0 0 chr3 17370364 17370387 -200666771 + (CTCA)n Simple_repeat Simple_repeat 4 26 0 285 241 38 13 chr3 17370390 17370469 -200666689 - L2 LINE L2 -9 3263 3183 633 271 65 36 chr3 17370472 17370719 -200666439 - MIR SINE MIR -1 261 8 202 250 0 0 chr3 17370776 17370820 -200666338 + L2 LINE L2 3270 3313 0 352 190 0 13 chr3 17370848 17370927 -200666231 - L2 LINE L2 -210 3062 2985 469 299 89 11 chr3 17371247 17371447 -200665711 + MIR SINE MIR 46 260 -2 28 48 0 0 chr3 17371982 17372024 -200665134 + AT_rich Low_complexity Low_complexity 1 42 0 266 263 220 34 chr3 17372024 17372142 -200665016 - MIR SINE MIR -109 153 14 393 255 0 66 chr3 17372531 17372637 -200664521 - L1MC4 LINE L1 -1330 6712 6614 * 396 246 28 0 chr3 17372564 17372672 -200664486 + L1MC4 LINE L1 1996 6983 -1339 838 101 0 62 chr3 17372672 17372801 -200664357 - FRAM SINE Alu -30 146 26 941 252 111 31 chr3 17372944 17373369 -200663789 + MLT1K LTR MaLR 126 584 -4 244 280 13 13 chr3 17373475 17373550 -200663608 + MARNA DNA Mariner 348 422 -164 289 162 27 95 chr3 17373973 17374047 -200663111 + MIR SINE MIR 124 192 -70 222 37 0 0 chr3 17374377 17374404 -200662754 + (TG)n Simple_repeat Simple_repeat 1 27 0 480 278 107 0 chr3 17374406 17374575 -200662583 + MER91A DNA MER1_type 10 196 0 225 154 0 0 chr3 17374889 17374928 -200662230 + T-rich Low_complexity Low_complexity 1 39 0 2475 72 0 0 chr3 17375234 17375527 -200661631 + AluY SINE Alu 1 293 -18 265 235 62 12 chr3 17375532 17375613 -200661545 - MIR SINE MIR -12 250 166 241 204 0 0 chr3 17375774 17375818 -200661340 - MIR SINE MIR -111 151 108 657 294 36 4 chr3 17376000 17376223 -200660935 + MIR SINE MIR 35 262 0 2071 155 0 0 chr3 17376442 17376745 -200660413 + AluSx SINE Alu 3 305 -7 188 138 0 0 chr3 17376763 17376792 -200660366 + MIR SINE MIR 66 94 -168 315 253 0 53 chr3 17376888 17376983 -200660175 - MIR SINE MIR -55 207 118 255 354 121 0 chr3 17378172 17378271 -200658887 + MIR SINE MIR 89 199 -63 453 62 0 0 chr3 17379284 17379349 -200657809 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 312 240 27 0 chr3 17379370 17379445 -200657713 - MIR SINE MIR -108 154 78 394 233 0 0 chr3 17379780 17379853 -200657305 + L2 LINE L2 3230 3302 -11 337 343 9 0 chr3 17379999 17380107 -200657051 + MIR SINE MIR 57 165 -97 259 234 141 0 chr3 17380804 17380890 -200656268 - MIR SINE MIR -51 157 49 181 284 90 0 chr3 17381571 17381638 -200655520 + L2 LINE L2 3180 3252 -61 420 218 57 24 chr3 17382229 17382353 -200654805 - L2 LINE L2 -12 3301 3174 656 248 0 0 chr3 17382573 17382698 -200654460 + L2 LINE L2 3189 3313 0 2228 196 62 37 chr3 17382842 17383409 -200653749 - L1MD2 LINE L1 -13 6346 5766 310 312 55 30 chr3 17383411 17383613 -200653545 - L1MD2 LINE L1 -509 5612 5406 1454 234 66 80 chr3 17383798 17383933 -200653225 + MLT1H LTR MaLR 45 180 -369 2085 96 43 127 chr3 17383933 17384328 -200652830 - THE1B LTR MaLR 0 364 3 1454 234 66 80 chr3 17384328 17384704 -200652454 + MLT1H LTR MaLR 180 549 0 499 269 39 8 chr3 17385848 17385978 -200651180 - MIR SINE MIR -109 153 20 461 274 97 10 chr3 17386171 17386362 -200650796 + MIR SINE MIR 40 248 -14 189 107 0 0 chr3 17386690 17386718 -200650440 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 245 360 45 9 chr3 17386726 17386837 -200650321 - L2 LINE L2 -20 3252 3138 469 224 48 8 chr3 17386992 17387117 -200650041 + MLT1L LTR MaLR 169 298 -317 327 273 125 0 chr3 17387190 17387318 -200649840 + MLT1L LTR MaLR 420 563 -52 339 262 57 33 chr3 17387669 17387791 -200649367 + MIR SINE MIR 108 232 -30 632 287 20 15 chr3 17388050 17388245 -200648913 + L1ME LINE L1 5614 5809 -312 296 301 26 7 chr3 17388312 17388465 -200648693 + HAL1b LINE L1 1179 1334 -14 2075 189 26 0 chr3 17388489 17388871 -200648287 + MSTD LTR MaLR 5 396 0 269 222 246 48 chr3 17389024 17389191 -200647967 - L3 LINE CR1 -104 1473 1274 1107 260 59 31 chr3 17389546 17389938 -200647220 - MLT1I LTR MaLR -1 408 6 235 271 0 0 chr3 17389962 17390010 -200647148 + polypurine Low_complexity Low_complexity 3 50 0 214 195 0 0 chr3 17390422 17390463 -200646695 - L2 LINE L2 -3 3310 3270 678 264 35 22 chr3 17391178 17391405 -200645753 - MIR SINE MIR -2 260 31 478 266 50 65 chr3 17392464 17392554 -200644604 + MIR SINE MIR 61 151 -111 2700 206 39 0 chr3 17392554 17393089 -200644069 + MER74A LTR ERVL 1 556 -2 478 266 50 65 chr3 17393089 17393197 -200643961 + MIR SINE MIR 151 256 -6 736 209 127 6 chr3 17393279 17393437 -200643721 - MER45A DNA AcHobo -1 177 1 282 305 67 19 chr3 17394248 17394353 -200642805 + L2 LINE L2 2957 3066 -206 337 263 23 4 chr3 17394494 17394630 -200642528 + MIR SINE MIR 57 252 -10 425 285 0 83 chr3 17394636 17394674 -200642484 + L2 LINE L2 3182 3222 -91 510 258 15 8 chr3 17394674 17394806 -200642352 - MER94 DNA DNA -1 133 1 425 285 0 83 chr3 17394806 17394911 -200642247 + L2 LINE L2 3222 3313 0 258 105 0 0 chr3 17395040 17395078 -200642080 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 358 299 174 43 chr3 17395523 17395707 -200641451 - MIR SINE MIR -5 257 50 219 104 83 42 chr3 17395789 17395837 -200641321 + MIR SINE MIR 81 130 -78 7088 67 0 0 chr3 17396163 17397056 -200640102 + L1PA5 LINE L1 5261 6153 -1 4654 234 27 12 chr3 17397056 17398485 -200638673 - L1MDa LINE L1 -2613 3927 2478 3534 175 58 28 chr3 17398479 17399297 -200637861 - L1MDa LINE L1 -4332 2208 1367 * 691 104 0 0 chr3 17399379 17399475 -200637683 + MLT1B LTR MaLR 284 379 -11 1792 166 47 53 chr3 17399489 17399916 -200637242 + Charlie1 DNA MER1_type 2276 2701 -60 2310 117 0 0 chr3 17399916 17400214 -200636944 - AluSx SINE Alu -14 298 1 1792 166 47 53 chr3 17400214 17400275 -200636883 + Charlie1 DNA MER1_type 2701 2761 0 807 291 98 29 chr3 17400283 17400764 -200636394 + MER113 DNA MER1_type? 1 514 -7 620 248 26 63 chr3 17401105 17401375 -200635783 + L1ME3A LINE L1 5692 5951 -219 2277 123 3 0 chr3 17401423 17401733 -200635425 + AluSx SINE Alu 1 311 -1 538 262 40 15 chr3 17401916 17402118 -200635040 + L1ME4a LINE L1 5716 5922 -199 377 252 35 63 chr3 17402901 17403044 -200634114 - MIR SINE MIR -95 167 29 397 201 147 49 chr3 17403358 17403542 -200633616 + MIR3 SINE MIR 5 206 -2 400 240 50 0 chr3 17403765 17403865 -200633293 - MIR SINE MIR -63 145 41 250 309 0 64 chr3 17404369 17404479 -200632679 - MIR SINE MIR -12 250 148 243 100 0 140 chr3 17404591 17404641 -200632517 + LTR16C LTR ERVL 188 230 -261 1026 157 136 79 chr3 17404667 17404947 -200632211 + LTR16C LTR ERVL 193 488 -3 362 308 91 14 chr3 17404948 17405091 -200632067 - MIR SINE MIR -97 165 12 226 338 14 0 chr3 17405155 17405226 -200631932 - L2 LINE L2 0 3313 3242 * 274 290 90 24 chr3 17405221 17405388 -200631770 + MIR SINE MIR 9 190 -18 256 265 121 99 chr3 17405368 17405591 -200631567 + L2 LINE L2 3044 3271 -1 * 241 364 0 0 chr3 17405808 17405885 -200631273 + CT-rich Low_complexity Low_complexity 1 77 0 283 196 0 0 chr3 17406114 17406165 -200630993 - MIR SINE MIR -143 119 69 361 272 161 33 chr3 17408720 17408900 -200628258 - MIR SINE MIR -12 250 48 330 326 108 0 chr3 17409051 17409180 -200627978 - MIR SINE MIR -41 221 79 244 286 41 20 chr3 17409202 17409300 -200627858 + MIR SINE MIR 117 216 -46 326 298 79 0 chr3 17409435 17409549 -200627609 + L2 LINE L2 3141 3263 -9 192 268 89 0 chr3 17409750 17409806 -200627352 - MIR3 SINE MIR -39 169 109 231 264 14 28 chr3 17410375 17410447 -200626711 - MIR SINE MIR -56 152 82 813 205 51 52 chr3 17410466 17410897 -200626261 + MLT1D LTR MaLR 1 505 0 321 267 92 42 chr3 17410904 17411024 -200626134 - MIR3 SINE MIR -6 202 77 181 304 185 0 chr3 17411283 17411375 -200625783 + MIR SINE MIR 117 225 -37 379 258 11 0 chr3 17411561 17411650 -200625508 + L2 LINE L2 2970 3059 -213 2272 108 0 3 chr3 17412079 17412375 -200624783 - AluSx SINE Alu -17 295 1 908 264 101 43 chr3 17412463 17412861 -200624297 - L2 LINE L2 -14 3299 2879 727 245 38 22 chr3 17412990 17413174 -200623984 - MIR SINE MIR -56 206 20 184 309 53 21 chr3 17413910 17414004 -200623154 - MIR SINE MIR -164 98 2 1024 249 31 90 chr3 17414308 17414817 -200622341 + MLT1K LTR MaLR 39 517 -71 197 143 0 41 chr3 17415020 17415069 -200622089 + (GGAGA)n Simple_repeat Simple_repeat 5 51 0 1944 136 82 0 chr3 17415377 17415707 -200621451 + L1MA5 LINE L1 5944 6300 0 296 284 147 0 chr3 17415748 17415857 -200621301 - MIR SINE MIR -63 145 21 545 328 187 28 chr3 17416627 17417452 -200619706 + L2 LINE L2 2320 3270 -2 660 138 49 49 chr3 17417642 17417716 -200619442 - MIR SINE MIR -104 158 82 2369 105 39 30 chr3 17417716 17418077 -200619081 + THE1B LTR MaLR 1 364 0 660 138 49 49 chr3 17418077 17418125 -200619033 - MIR SINE MIR -179 83 36 465 219 47 0 chr3 17418876 17419004 -200618154 + L1ME LINE L1 5657 5790 -331 748 309 28 12 chr3 17419292 17419544 -200617614 - MIR SINE MIR -4 258 3 548 231 27 20 chr3 17419897 17420044 -200617114 - MIR SINE MIR -36 226 79 611 154 114 20 chr3 17420394 17420543 -200616615 + LTR33A LTR ERVL 352 514 -9 799 277 72 72 chr3 17421011 17421476 -200615682 + MLT1J LTR MaLR 9 450 0 319 343 21 29 chr3 17421576 17421716 -200615442 + L2 LINE L2 2503 2641 -673 273 232 29 14 chr3 17421882 17421951 -200615207 + MIR SINE MIR 36 105 -157 491 206 84 0 chr3 17421960 17422067 -200615091 + MIR SINE MIR 7 122 -140 204 289 0 0 chr3 17422087 17422177 -200614981 + (CCCA)n Simple_repeat Simple_repeat 3 92 0 180 152 0 0 chr3 17422296 17422329 -200614829 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 527 204 15 0 chr3 17422574 17422706 -200614452 - MER20B DNA MER1_type -69 714 581 793 309 113 0 chr3 17422858 17423185 -200613973 - MER20B DNA MER1_type -267 516 153 714 319 30 4 chr3 17423633 17423865 -200613293 + MIR SINE MIR 22 259 -3 336 333 87 0 chr3 17425202 17425352 -200611806 - MIR SINE MIR -78 184 22 468 276 32 60 chr3 17425404 17425623 -200611535 - MIR SINE MIR -14 248 36 321 262 10 48 chr3 17426211 17426314 -200610844 + LTR67 LTR ERVL 4 102 -455 236 380 99 0 chr3 17426351 17426493 -200610665 + MIR3 SINE MIR 52 207 -1 668 282 94 4 chr3 17428050 17428284 -200608874 + MLT1H LTR MaLR 3 257 -292 351 248 0 80 chr3 17428490 17428561 -200608597 + MIR SINE MIR 148 206 -56 977 110 0 0 chr3 17428561 17428716 -200608442 + L1MB3 LINE L1 6028 6182 -1 351 248 0 80 chr3 17428716 17428769 -200608389 + MIR SINE MIR 206 262 0 487 305 98 11 chr3 17428937 17429111 -200608047 - MIR3 SINE MIR -10 198 10 272 250 161 24 chr3 17429680 17429804 -200607354 - MER5A DNA MER1_type -1 188 48 560 261 140 64 chr3 17430171 17430642 -200606516 - HAL1 LINE L1 -1399 1108 602 249 160 20 20 chr3 17431489 17431539 -200605619 - MIR SINE MIR -110 152 103 186 268 0 18 chr3 17431579 17431635 -200605523 + MIR SINE MIR 161 215 -47 632 130 0 0 chr3 17431637 17431737 -200605421 + L1MB3 LINE L1 6028 6127 -56 295 344 127 6 chr3 17432161 17432318 -200604840 - MIR SINE MIR -50 212 37 1789 179 7 3 chr3 17432548 17432856 -200604302 - AluJb SINE Alu -3 309 1 2391 71 37 0 chr3 17432959 17433253 -200603905 + AluSg SINE Alu 1 305 -5 407 295 0 0 chr3 17433262 17433357 -200603801 + MER5A DNA MER1_type 15 109 -80 245 354 80 0 chr3 17433509 17433622 -200603536 - MIR3 SINE MIR -46 162 41 262 295 13 94 chr3 17434147 17434296 -200602862 + MIR SINE MIR 14 150 -112 2502 227 42 45 chr3 17434298 17434509 -200602649 + L1ME3 LINE L1 5451 5661 -501 1737 105 0 13 chr3 17434509 17434747 -200602411 + AluY SINE Alu 71 305 -6 2502 227 42 45 chr3 17434747 17435249 -200601909 + L1ME3 LINE L1 5661 6162 0 230 207 16 8 chr3 17435392 17435455 -200601703 + MIR SINE MIR 93 152 -63 1064 88 0 7 chr3 17435567 17435703 -200601455 + AluSq/x SINE Alu 1 135 -177 2144 117 0 3 chr3 17435703 17436025 -200601133 + AluSx SINE Alu 1 321 0 512 264 7 23 chr3 17436463 17436634 -200600524 + L2 LINE L2 3108 3312 -1 666 257 65 19 chr3 17436945 17437159 -200599999 + MER58A DNA MER1_type 1 224 0 674 256 12 19 chr3 17437185 17437345 -200599813 - MIR SINE MIR -55 207 49 619 218 103 0 chr3 17437927 17438083 -200599075 + MIR SINE MIR 86 257 -5 551 244 86 63 chr3 17438616 17438931 -200598227 - L2 LINE L2 -102 3211 2890 252 245 0 0 chr3 17439096 17439145 -200598013 + L2 LINE L2 3214 3262 -10 243 258 163 0 chr3 17439812 17439960 -200597198 - MIR SINE MIR -55 207 32 258 337 10 0 chr3 17440148 17440249 -200596909 - L2 LINE L2 -25 3247 3146 1269 288 114 27 chr3 17440916 17441392 -200595766 + L2 LINE L2 2252 2685 -628 2469 66 10 0 chr3 17441392 17441694 -200595464 + AluY SINE Alu 1 305 -6 1269 288 114 27 chr3 17441694 17442174 -200594984 + L2 LINE L2 2685 3292 -21 561 267 36 0 chr3 17442506 17442671 -200594487 - MIR SINE MIR -33 229 59 234 260 96 62 chr3 17443052 17443198 -200593960 + L2 LINE L2 3009 3159 -154 1492 182 4 44 chr3 17443208 17443483 -200593675 + AluJb SINE Alu 21 284 -28 198 150 0 0 chr3 17443483 17443523 -200593635 + (TA)n Simple_repeat Simple_repeat 1 40 0 395 277 65 19 chr3 17443548 17443559 -200593599 + L2 LINE L2 3152 3161 -152 2080 135 30 0 chr3 17443559 17443856 -200593302 - AluSx SINE Alu -6 306 1 395 277 65 19 chr3 17443856 17443919 -200593239 + L2 LINE L2 3161 3220 -93 291 28 0 0 chr3 17443919 17443955 -200593203 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 395 277 65 19 chr3 17443955 17444034 -200593124 + L2 LINE L2 3220 3313 0 222 349 0 0 chr3 17444259 17444325 -200592833 - L2 LINE L2 0 3313 3248 517 195 207 53 chr3 17444339 17444508 -200592650 - MER20B DNA MER1_type -24 195 1 452 303 26 13 chr3 17444842 17444997 -200592161 - MIR SINE MIR -8 254 98 2209 217 62 59 chr3 17445901 17446615 -200590543 + L1ME1 LINE L1 5449 6164 -2 2105 130 0 10 chr3 17448970 17449262 -200587896 - AluJb SINE Alu -23 289 1 383 287 132 12 chr3 17449416 17449583 -200587575 - MIR SINE MIR -64 198 12 7209 33 0 2 chr3 17449643 17450919 -200586239 + L1PA5 LINE L1 4894 6167 0 340 216 139 9 chr3 17450932 17451090 -200586068 - MIR SINE MIR -13 249 71 493 283 53 13 chr3 17451635 17451787 -200585371 - MIR SINE MIR -63 199 42 739 321 17 0 chr3 17451983 17452280 -200584878 + L2 LINE L2 2767 3067 -246 381 303 92 7 chr3 17452444 17452586 -200584572 + L2 LINE L2 3159 3312 -1 597 217 0 0 chr3 17453169 17453349 -200583809 + (CA)n Simple_repeat Simple_repeat 1 180 0 510 217 0 0 chr3 17453394 17453560 -200583598 + (CA)n Simple_repeat Simple_repeat 1 166 0 542 280 13 19 chr3 17453791 17453948 -200583210 + MIR SINE MIR 13 168 -94 689 225 30 55 chr3 17454412 17454612 -200582546 + MIR SINE MIR 10 204 -58 235 232 158 0 chr3 17457597 17457692 -200579466 + MIR SINE MIR 37 146 -62 511 269 163 29 chr3 17458602 17458951 -200578207 - MER113 DNA MER1_type? -125 396 1 267 319 130 32 chr3 17459272 17459488 -200577670 + MIR SINE MIR 20 256 -6 433 302 133 44 chr3 17460101 17460604 -200576554 + L2 LINE L2 2240 2787 -527 581 284 147 4 chr3 17460760 17460985 -200576173 + Charlie8 DNA MER1_type 9 265 -2152 346 316 26 0 chr3 17461425 17461539 -200575619 - MIR SINE MIR -29 233 117 1357 212 3 35 chr3 17461740 17461829 -200575329 + AluJo SINE Alu 33 123 -189 2375 105 0 0 chr3 17461829 17462124 -200575034 - AluSx SINE Alu -17 295 1 1357 212 3 35 chr3 17462124 17462322 -200574836 + AluJo SINE Alu 123 311 -1 423 245 46 58 chr3 17462352 17462528 -200574630 + MIR SINE MIR 42 214 -48 267 237 158 0 chr3 17462970 17463046 -200574112 + L2 LINE L2 3179 3266 -6 297 0 0 0 chr3 17463056 17463089 -200574069 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 741 93 0 0 chr3 17463088 17463195 -200573963 + (GA)n Simple_repeat Simple_repeat 2 108 0 185 178 22 0 chr3 17463341 17463386 -200573772 + MIR SINE MIR 70 115 -147 1090 141 0 12 chr3 17464454 17464617 -200572541 + FRAM SINE Alu 2 162 -14 301 398 47 21 chr3 17464826 17465105 -200572053 + L2 LINE L2 2985 3270 -2 375 280 47 23 chr3 17466183 17466332 -200570826 - L1MC4 LINE L1 -1306 7016 1995 471 311 89 26 chr3 17467929 17468119 -200569039 + MIR SINE MIR 59 260 -2 1303 288 104 18 chr3 17468398 17468996 -200568162 + L2 LINE L2 1792 2440 -874 1577 272 71 53 chr3 17469022 17469724 -200567434 + MER21B LTR ERV1 25 739 -124 1021 262 192 8 chr3 17469737 17470447 -200566711 + L2 LINE L2 2458 3313 0 449 271 15 41 chr3 17470718 17470899 -200566259 + MIR SINE MIR 19 192 -62 456 299 85 24 chr3 17471220 17471514 -200565644 - L2 LINE L2 -419 2895 2584 196 208 42 0 chr3 17471568 17471616 -200565542 - L2 LINE L2 -831 2483 2434 1962 168 54 0 chr3 17472315 17472685 -200564473 + MLT1B LTR MaLR 1 390 0 719 289 61 48 chr3 17472916 17473438 -200563720 - L1ME4a LINE L1 -3 6118 5590 378 262 14 64 chr3 17473707 17473848 -200563310 - MIR SINE MIR -118 144 11 624 276 113 0 chr3 17474323 17474544 -200562614 + MIR SINE MIR 11 256 -6 1101 259 71 25 chr3 17476639 17477087 -200560071 - LTR33 LTR ERVL -52 469 1 259 250 48 29 chr3 17477631 17477735 -200559423 - MIR3 SINE MIR -41 167 62 433 217 22 0 chr3 17477907 17477999 -200559159 - MIR SINE MIR -58 150 100 574 304 31 5 chr3 17479037 17479228 -200557930 + MIR SINE MIR 43 238 -24 1875 148 34 17 chr3 17479230 17479528 -200557630 - AluJo SINE Alu -4 308 6 405 304 17 0 chr3 17480055 17480170 -200556988 + MIR3 SINE MIR 42 158 -50 437 214 62 9 chr3 17480236 17480348 -200556810 - MER103 DNA DNA -46 120 3 196 276 0 0 chr3 17480398 17480456 -200556702 + MIR3 SINE MIR 151 208 0 347 67 0 33 chr3 17480861 17480921 -200556237 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 983 217 70 60 chr3 17481960 17482329 -200554829 - MER113 DNA MER1_type? -147 374 2 290 273 40 0 chr3 17482329 17482428 -200554730 - MIR3 SINE MIR -47 161 59 594 234 0 0 chr3 17482663 17482881 -200554277 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 468 0 0 0 chr3 17483041 17483093 -200554065 + (CA)n Simple_repeat Simple_repeat 2 53 0 315 350 56 12 chr3 17483122 17483282 -200553876 + MIR3 SINE MIR 16 182 -26 385 298 63 13 chr3 17483653 17483811 -200553347 + MIR SINE MIR 37 202 -60 641 315 106 17 chr3 17483874 17484547 -200552611 - L2 LINE L2 0 3313 2572 2615 216 17 25 chr3 17484933 17485521 -200551637 + MER82 DNA MER2_type 1 583 -70 290 253 94 6 chr3 17485710 17485868 -200551290 - MIR SINE MIR -70 192 14 3152 71 11 13 chr3 17486338 17486786 -200550372 - L1PA13 LINE L1 0 6163 5717 258 200 83 0 chr3 17486794 17486854 -200550304 + MIR SINE MIR 79 143 -119 242 257 71 82 chr3 17486912 17487096 -200550062 - MIR SINE MIR -50 212 32 642 262 112 5 chr3 17487194 17487408 -200549750 + MIR SINE MIR 13 249 -13 557 241 83 7 chr3 17487548 17487693 -200549465 - MIR SINE MIR -92 170 15 208 322 111 0 chr3 17488174 17488264 -200548894 + MIR SINE MIR 25 124 -84 453 267 154 39 chr3 17488281 17488566 -200548592 + MER102b DNA MER1_type 22 339 -2 180 237 0 0 chr3 17488686 17488724 -200548434 + L2 LINE L2 3267 3304 -9 704 267 26 10 chr3 17489245 17489440 -200547718 + MIR SINE MIR 15 212 -50 331 215 0 0 chr3 17490235 17490300 -200546858 + MLT1L LTR MaLR 327 391 -224 399 267 48 0 chr3 17491336 17491441 -200545717 - Charlie8 DNA MER1_type -2235 182 73 8032 232 65 13 chr3 17492696 17495230 -200541928 + L1MEc LINE L1 35 2657 -3558 625 226 0 30 chr3 17495228 17495392 -200541766 + L1M4 LINE L1 5046 5204 -942 * 1864 179 38 3 chr3 17495471 17495817 -200541341 - MLT1A1 LTR MaLR -7 358 1 749 266 20 23 chr3 17495824 17496130 -200541028 - LTR33 LTR ERVL -125 396 29 310 298 0 39 chr3 17496152 17496256 -200540902 - MER81 DNA DNA -14 100 1 240 289 13 13 chr3 17496286 17496362 -200540796 - MIR SINE MIR -101 161 86 382 335 109 22 chr3 17496951 17497181 -200539977 + L3 LINE CR1 442 691 -886 197 336 10 29 chr3 17497361 17497465 -200539693 + L3 LINE CR1 915 1016 -561 581 306 73 37 chr3 17497468 17497795 -200539363 - MER102b DNA MER1_type -2 339 1 251 296 0 0 chr3 17497999 17498053 -200539105 + (CCCA)n Simple_repeat Simple_repeat 4 57 0 696 164 11 38 chr3 17498053 17498236 -200538922 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 898 244 68 0 chr3 17498264 17498485 -200538673 + MIR SINE MIR 5 240 -22 422 318 54 14 chr3 17498518 17498666 -200538492 - L2 LINE L2 -5 3267 3114 2680 245 81 39 chr3 17499068 17499241 -200537917 + L1MC4 LINE L1 6757 6921 -1121 231 36 0 0 chr3 17499241 17499269 -200537889 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2680 245 81 39 chr3 17499269 17500053 -200537105 + L1MC4 LINE L1 6921 7755 -287 4683 167 38 3 chr3 17500059 17501088 -200536070 + L1MB5 LINE L1 5100 6165 -9 507 219 47 128 chr3 17501097 17501417 -200535741 + L1MC4 LINE L1 7749 8042 0 709 291 52 3 chr3 17501470 17501776 -200535382 + L1MC4 LINE L1 7689 8009 -33 320 278 176 62 chr3 17503732 17503908 -200533250 + MIR SINE MIR 66 261 -1 295 295 168 20 chr3 17503912 17504061 -200533097 - MIR SINE MIR -17 245 75 263 239 261 0 chr3 17504621 17504713 -200532445 - MER5A DNA MER1_type -35 154 39 212 197 0 33 chr3 17505569 17505630 -200531528 + CT-rich Low_complexity Low_complexity 2 60 0 27 62 0 0 chr3 17505784 17505832 -200531326 + AT_rich Low_complexity Low_complexity 1 48 0 241 267 16 0 chr3 17506171 17506241 -200530917 + MIR SINE MIR 84 146 -62 186 200 0 0 chr3 17506548 17506583 -200530575 - MIR SINE MIR -114 148 114 312 247 26 0 chr3 17507872 17507949 -200529209 - MIR SINE MIR -79 183 105 243 0 0 0 chr3 17508039 17508066 -200529092 + (T)n Simple_repeat Simple_repeat 1 27 0 219 200 150 0 chr3 17508270 17508350 -200528808 + MIR3 SINE MIR 110 201 -7 327 254 96 41 chr3 17508951 17509117 -200528041 + MIR SINE MIR 14 183 -61 242 203 40 54 chr3 17510093 17510167 -200526991 - MIR SINE MIR -77 131 59 428 289 67 26 chr3 17512227 17512421 -200524737 - MIR3 SINE MIR -2 206 5 676 158 178 7 chr3 17513757 17513909 -200523249 - Tigger1 DNA MER2_type 0 2418 2241 1829 144 7 4 chr3 17513913 17514184 -200522974 - AluJb SINE Alu -23 289 18 526 153 59 0 chr3 17514185 17514270 -200522888 - MER33 DNA MER1_type -208 116 27 268 277 62 54 chr3 17514763 17514893 -200522265 - MER5A DNA MER1_type -22 167 37 408 241 98 0 chr3 17514996 17515129 -200522029 - L1MD3 LINE L1 -86 7909 7764 * 1006 297 82 5 chr3 17515107 17515524 -200521634 - L1MEc LINE L1 -4189 2207 1759 659 192 0 0 chr3 17515524 17515649 -200521509 - AluJb SINE Alu -9 303 179 2369 120 0 0 chr3 17515719 17516028 -200521130 - AluSx SINE Alu -3 309 1 914 150 0 21 chr3 17516048 17516188 -200520970 - AluJo SINE Alu -175 137 1 448 222 78 101 chr3 17516191 17516438 -200520720 - L1MEc LINE L1 -4640 1756 1516 2272 99 31 0 chr3 17516438 17516730 -200520428 - AluSg SINE Alu -9 301 1 448 222 78 101 chr3 17516730 17516788 -200520370 - L1MEc LINE L1 -4880 1516 1458 * 657 263 160 38 chr3 17516771 17516967 -200520191 - L1MEc LINE L1 -5835 561 390 2431 94 0 0 chr3 17516967 17517274 -200519884 - AluSx SINE Alu -5 307 1 657 263 160 38 chr3 17517274 17517495 -200519663 - L1MEc LINE L1 -6006 390 93 198 0 0 0 chr3 17517513 17517535 -200519623 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 7260 30 9 11 chr3 17517536 17518730 -200518428 - L1PA3 LINE L1 0 6155 4963 582 151 126 17 chr3 17518732 17518851 -200518307 - FLAM_C SINE Alu -1 132 1 1805 146 21 7 chr3 17518858 17519138 -200518020 - AluSx SINE Alu -18 294 11 191 135 19 39 chr3 17520130 17520182 -200516976 - MIR SINE MIR -77 131 81 427 303 74 6 chr3 17520708 17520883 -200516275 - MIR SINE MIR -71 191 5 284 261 81 36 chr3 17521031 17521142 -200516016 - MIR3 SINE MIR -47 161 46 2321 114 0 0 chr3 17521172 17521480 -200515678 + AluSx SINE Alu 1 308 -4 527 0 16 0 chr3 17522324 17522387 -200514771 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2193 82 24 10 chr3 17522387 17522678 -200514480 - AluSx SINE Alu -17 295 1 412 254 49 8 chr3 17523372 17523494 -200513664 - MIR SINE MIR -86 176 50 490 114 18 35 chr3 17524052 17524166 -200512992 + (TCTCCC)n Simple_repeat Simple_repeat 3 114 0 477 221 27 0 chr3 17524285 17524434 -200512724 + CT-rich Low_complexity Low_complexity 3 155 0 301 241 19 37 chr3 17524650 17524758 -200512400 + MIR SINE MIR 32 137 -71 353 270 51 51 chr3 17525169 17525306 -200511852 - L2 LINE L2 0 3272 3136 445 298 175 38 chr3 17525663 17526005 -200511153 + L2 LINE L2 2884 3272 0 207 261 43 65 chr3 17527016 17527108 -200510050 + MIR SINE MIR 103 192 -70 455 276 31 31 chr3 17527115 17527168 -200509990 - MIR SINE MIR 0 262 210 2366 82 3 0 chr3 17527168 17527461 -200509697 - AluSp SINE Alu -4 309 16 455 276 31 31 chr3 17527461 17527570 -200509588 - MIR SINE MIR -51 211 100 220 316 25 0 chr3 17527570 17527649 -200509509 - MIR SINE MIR -70 138 58 180 0 0 0 chr3 17528704 17528724 -200508434 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 305 219 110 103 chr3 17529059 17529205 -200507953 + MIR SINE MIR 17 163 -99 1732 184 97 35 chr3 17529581 17529916 -200507242 + Charlie4a DNA MER1_type 21 393 -1568 866 186 6 0 chr3 17529916 17530072 -200507086 + FRAM SINE Alu 1 157 -9 1732 184 97 35 chr3 17530072 17530192 -200506966 + Charlie4a DNA MER1_type 393 504 -4 214 280 199 15 chr3 17530717 17530854 -200506304 - MIR SINE MIR -89 173 3 222 259 86 0 chr3 17531189 17531270 -200505888 + MIR SINE MIR 58 145 -63 3172 185 41 17 chr3 17532518 17533156 -200504002 - MER6 DNA MER2_type -183 682 30 2704 154 50 21 chr3 17533164 17533632 -200503526 - L1MB7 LINE L1 -259 5925 5439 2319 115 0 10 chr3 17533632 17533944 -200503214 - AluSx SINE Alu -3 309 1 2704 154 50 21 chr3 17533944 17534000 -200503158 - L1MB7 LINE L1 -745 5439 5386 615 335 51 53 chr3 17534704 17534916 -200502242 + HAL1b LINE L1 66 277 -1071 2352 99 7 0 chr3 17534916 17535220 -200501938 + AluSx SINE Alu 1 306 -6 794 122 30 15 chr3 17535224 17535355 -200501803 + FLAM_C SINE Alu 1 133 0 615 335 51 53 chr3 17535355 17535567 -200501591 + HAL1b LINE L1 280 494 -854 1223 206 104 63 chr3 17535568 17536089 -200501069 + L1ME1 LINE L1 5638 6333 -1 284 304 72 0 chr3 17536086 17536224 -200500934 + HAL1b LINE L1 517 664 -684 * 839 109 0 0 chr3 17536285 17536395 -200500763 + AluSx SINE Alu 1 110 -202 239 186 102 17 chr3 17536404 17536463 -200500695 + THE1B LTR MaLR 7 70 -358 1359 151 4 44 chr3 17536575 17536827 -200500331 + THE1B LTR MaLR 122 363 -1 1451 105 0 0 chr3 17536827 17537017 -200500141 + AluSx SINE Alu 107 296 -16 846 139 19 57 chr3 17537018 17537176 -200499982 + AluJo/FRAM SINE Alu 144 295 -17 934 238 106 37 chr3 17537197 17537276 -200499882 + L1MC5 LINE L1 6996 7068 -893 2060 130 51 23 chr3 17537276 17537630 -200499528 - THE1B LTR MaLR 0 364 1 934 238 106 37 chr3 17537630 17537954 -200499204 + L1MC5 LINE L1 7068 7427 -534 267 220 9 73 chr3 17538112 17538221 -200498937 + L1ME3A LINE L1 5960 6061 -109 311 267 67 8 chr3 17540362 17540482 -200496676 - MIR SINE MIR -87 175 49 518 233 60 0 chr3 17540681 17540814 -200496344 + L1MB2 LINE L1 6028 6168 -3 1785 170 45 28 chr3 17541119 17541518 -200495640 - L1MB2 LINE L1 -99 6072 5667 222 292 0 13 chr3 17541566 17541639 -200495519 - MIR SINE MIR -112 96 47 1996 82 56 43 chr3 17541965 17542270 -200494888 - AluSx SINE Alu -3 309 1 590 176 146 24 chr3 17542400 17542565 -200494593 - MER5A DNA MER1_type 0 189 5 198 118 0 0 chr3 17545180 17545214 -200491944 + (T)n Simple_repeat Simple_repeat 1 34 0 364 251 171 33 chr3 17545438 17545772 -200491386 - Tigger8 DNA MER2_type -100 566 187 1528 164 0 45 chr3 17545844 17546131 -200491027 - AluSx SINE Alu -1 311 38 28 29 0 0 chr3 17596643 17596678 -200440480 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 17596809 17596833 -200440325 + AT_rich Low_complexity Low_complexity 1 24 0 284 226 11 32 chr3 17599555 17599648 -200437510 + T-rich Low_complexity Low_complexity 3 93 0 227 31 31 0 chr3 17599902 17599934 -200437224 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 3769 65 2 0 chr3 17599938 17600412 -200436746 - L1PA7 LINE L1 0 6154 5680 2359 94 0 7 chr3 17600412 17600711 -200436447 - AluSx SINE Alu -15 297 1 29 78 0 0 chr3 17600860 17600924 -200436234 + AT_rich Low_complexity Low_complexity 1 64 0 302 321 28 18 chr3 17601532 17601641 -200435517 - MIR3 SINE MIR -16 192 83 403 311 158 21 chr3 17602280 17602848 -200434310 - L2 LINE L2 -219 3053 2362 327 335 71 16 chr3 17603471 17603653 -200433505 + MIR SINE MIR 21 212 -50 254 198 139 0 chr3 17604605 17604691 -200432467 + MIR SINE MIR 40 137 -71 418 322 82 28 chr3 17604914 17605169 -200431989 + L2 LINE L2 2836 3104 -168 1329 314 50 69 chr3 17606433 17606927 -200430231 + L3 LINE CR1 766 1241 -336 2251 101 0 10 chr3 17606927 17607235 -200429923 - AluSq SINE Alu -8 305 1 1329 314 50 69 chr3 17607235 17607556 -200429602 + L3 LINE CR1 1241 1566 -11 263 222 283 0 chr3 17607758 17607857 -200429301 + MIR3 SINE MIR 3 129 -79 419 197 13 0 chr3 17607974 17608050 -200429108 - MER81 DNA DNA -37 77 1 316 216 0 102 chr3 17608050 17608138 -200429020 - MER5A DNA MER1_type -102 87 9 431 255 71 35 chr3 17609499 17609640 -200427518 + MER5A DNA MER1_type 35 180 -9 246 310 180 0 chr3 17610129 17610229 -200426929 + MIR SINE MIR 64 181 -81 819 236 109 60 chr3 17610292 17610640 -200426518 - L2 LINE L2 -38 3275 2911 534 284 99 6 chr3 17610771 17610933 -200426225 + MIR SINE MIR 14 190 -72 473 275 69 0 chr3 17611818 17611949 -200425209 + MIR SINE MIR 46 185 -77 239 296 141 37 chr3 17611983 17612118 -200425040 - MIR3 SINE MIR -28 180 32 330 222 56 11 chr3 17613527 17613617 -200423541 - L2 LINE L2 -1 3312 3219 181 214 95 143 chr3 17613951 17614077 -200423081 + L2 LINE L2 3133 3252 -20 669 291 52 3 chr3 17615258 17615564 -200421594 - L1MC4 LINE L1 -33 8009 7689 545 209 48 130 chr3 17615617 17615933 -200421225 - L1MC4 LINE L1 0 8042 7753 4657 165 40 5 chr3 17615946 17616975 -200420183 - L1MB5 LINE L1 -9 6165 5100 2567 242 81 39 chr3 17616981 17617765 -200419393 - L1MC4 LINE L1 -287 7755 6921 231 36 0 0 chr3 17617765 17617793 -200419365 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2567 242 81 39 chr3 17617793 17617966 -200419192 - L1MC4 LINE L1 -1121 6921 6757 375 252 171 8 chr3 17618799 17618922 -200418236 + MIR SINE MIR 21 163 -99 1232 196 46 0 chr3 17618922 17619182 -200417976 + MLT1E1 LTR MaLR 1 272 -382 1062 180 79 4 chr3 17619237 17619465 -200417693 + MLT1E1 LTR MaLR 409 653 -1 282 203 0 0 chr3 17619812 17619871 -200417287 + L1ME LINE L1 5753 5811 -351 669 168 35 0 chr3 17620138 17620251 -200416907 + L2 LINE L2 3197 3313 0 210 313 38 12 chr3 17620648 17620728 -200416430 + MIR SINE MIR 63 144 -64 2267 177 34 10 chr3 17620991 17621409 -200415749 + MSTA LTR MaLR 1 428 0 186 43 0 0 chr3 17621664 17621687 -200415471 + (CTCA)n Simple_repeat Simple_repeat 4 26 0 307 241 38 13 chr3 17621690 17621769 -200415389 - L2 LINE L2 -9 3263 3183 686 267 65 36 chr3 17621772 17622019 -200415139 - MIR SINE MIR -1 261 8 358 322 19 53 chr3 17622019 17622227 -200414931 - L2 LINE L2 -87 3185 2985 469 299 89 11 chr3 17622547 17622747 -200414411 + MIR SINE MIR 46 260 -2 28 48 0 0 chr3 17623282 17623324 -200413834 + AT_rich Low_complexity Low_complexity 1 42 0 266 263 220 34 chr3 17623324 17623442 -200413716 - MIR SINE MIR -109 153 14 915 254 40 0 chr3 17623812 17624040 -200413118 + MIR SINE MIR 2 238 -24 5422 124 34 6 chr3 17624200 17625046 -200412112 - L1MC1 LINE L1 -15 6318 5449 431 266 82 58 chr3 17625051 17625258 -200411900 - L1ME4a LINE L1 -296 5825 5614 189 0 0 0 chr3 17625367 17625388 -200411770 + (TG)n Simple_repeat Simple_repeat 1 21 0 222 222 0 0 chr3 17625714 17625768 -200411390 + CT-rich Low_complexity Low_complexity 2 55 0 644 265 39 94 chr3 17625786 17626161 -200410997 - L2 LINE L2 -40 3232 2888 563 254 12 12 chr3 17626461 17626634 -200410524 + L1ME2 LINE L1 5798 5970 -194 910 269 163 15 chr3 17626798 17627319 -200409839 + L1MC4 LINE L1 7445 8042 0 434 312 85 0 chr3 17627467 17627656 -200409502 - MLT1K LTR MaLR -23 565 361 197 272 86 37 chr3 17627812 17627893 -200409265 - MIR SINE MIR -147 115 31 577 217 6 6 chr3 17628046 17628077 -200409081 + CT-rich Low_complexity Low_complexity 2 32 -135 2030 151 0 22 chr3 17628077 17628396 -200408762 - AluJb SINE Alu 0 312 1 577 217 6 6 chr3 17628396 17628530 -200408628 + CT-rich Low_complexity Low_complexity 31 167 0 435 256 38 71 chr3 17628762 17628973 -200408185 - MIR SINE MIR -38 224 21 259 232 158 0 chr3 17630026 17630121 -200407037 - MIR SINE MIR -62 146 37 190 266 202 65 chr3 17631955 17632203 -200404955 - L2 LINE L2 -24 3248 2967 738 225 30 55 chr3 17633108 17633308 -200403850 - MIR SINE MIR -58 204 10 184 338 26 0 chr3 17633629 17633706 -200403452 - MIR SINE MIR -73 189 111 581 280 13 19 chr3 17633772 17633929 -200403229 - MIR SINE MIR -94 168 13 528 214 0 0 chr3 17634160 17634328 -200402830 + (TG)n Simple_repeat Simple_repeat 1 168 0 597 217 0 0 chr3 17634372 17634552 -200402606 + (TG)n Simple_repeat Simple_repeat 1 180 0 620 230 86 86 chr3 17635383 17635687 -200401471 - L1ME3A LINE L1 -8 6162 5859 594 215 98 0 chr3 17635684 17635847 -200401311 - L1ME3A LINE L1 -727 5435 5257 * 1098 262 19 22 chr3 17637320 17637633 -200399525 - MLT1I LTR MaLR 0 409 98 473 144 144 0 chr3 17637899 17638003 -200399155 + MER103 DNA DNA 2 120 -46 624 204 32 81 chr3 17638040 17638226 -200398932 + MER5B DNA MER1_type 1 177 -1 290 309 43 21 chr3 17638606 17638700 -200398458 + L2 LINE L2 3161 3256 -16 219 284 46 55 chr3 17639278 17639387 -200397771 - MER5A DNA MER1_type 0 189 82 1678 219 73 2 chr3 17639475 17639926 -200397232 + LTR16C LTR ERVL 1 483 -8 363 268 16 32 chr3 17640358 17640481 -200396677 + Charlie8 DNA MER1_type 92 212 -2205 283 355 43 48 chr3 17641174 17641405 -200395753 + L3 LINE CR1 760 989 -588 1286 253 80 6 chr3 17641811 17642175 -200394983 + LTR16C LTR ERVL 88 478 -13 1233 283 77 46 chr3 17642265 17643389 -200393769 + L1MC4a LINE L1 4741 5873 -248 755 171 20 0 chr3 17643389 17643541 -200393617 - L1MB7 LINE L1 0 6184 6030 1233 283 77 46 chr3 17643541 17643583 -200393575 + L1MC4a LINE L1 5873 5912 -209 258 116 0 0 chr3 17643590 17643633 -200393525 + (CA)n Simple_repeat Simple_repeat 2 44 0 379 282 113 60 chr3 17643756 17643882 -200393276 - L2 LINE L2 -435 2879 2761 1137 179 20 0 chr3 17643882 17644083 -200393075 + MER3 DNA MER1_type 5 209 0 379 282 113 60 chr3 17644083 17644389 -200392769 - L2 LINE L2 -553 2761 2424 353 267 30 10 chr3 17644748 17644849 -200392309 + L2 LINE L2 3211 3313 0 1035 63 0 14 chr3 17645369 17645511 -200391647 + L1PA5 LINE L1 6015 6154 0 606 192 120 48 chr3 17645683 17645850 -200391308 - MIR SINE MIR -1 261 83 360 303 127 7 chr3 17646096 17646238 -200390920 + MIR SINE MIR 92 250 -12 1720 120 25 104 chr3 17646542 17646868 -200390290 + AluYb8 SINE Alu 1 300 -18 2037 182 14 6 chr3 17647287 17647649 -200389509 - MLT1A1 LTR MaLR 0 365 1 315 224 0 0 chr3 17647664 17647740 -200389418 + (TG)n Simple_repeat Simple_repeat 1 76 0 185 367 50 27 chr3 17647755 17648014 -200389144 - L2 LINE L2 -338 2976 2712 397 284 25 53 chr3 17649129 17649350 -200387808 + MIR SINE MIR 18 232 -30 320 304 90 37 chr3 17649460 17649758 -200387400 + MLT1I LTR MaLR 68 428 -18 331 267 0 13 chr3 17649779 17649854 -200387304 - L2 LINE L2 -15 3298 3225 216 346 25 12 chr3 17650336 17650417 -200386741 - L2 LINE L2 -2 3311 3230 341 323 87 0 chr3 17651276 17651403 -200385755 - MIR SINE MIR -55 153 16 254 320 54 14 chr3 17652110 17652257 -200384901 - MIR3 SINE MIR -17 191 39 222 242 32 16 chr3 17652724 17652848 -200384310 + (CACAC)n Simple_repeat Simple_repeat 3 128 0 238 97 0 0 chr3 17652897 17652928 -200384230 + (A)n Simple_repeat Simple_repeat 1 31 0 377 217 0 0 chr3 17652941 17653001 -200384157 + polypurine Low_complexity Low_complexity 3 62 0 298 256 12 23 chr3 17653196 17653282 -200383876 + MIR3 SINE MIR 92 176 -32 332 253 75 124 chr3 17653438 17653624 -200383534 - MER5A DNA MER1_type -6 183 7 180 250 23 0 chr3 17654018 17654062 -200383096 - L2 LINE L2 -13 3259 3215 207 305 0 0 chr3 17654101 17654183 -200382975 + MIR SINE MIR 130 211 -51 281 224 60 0 chr3 17654328 17654395 -200382763 + L2 LINE L2 2917 2987 -285 1105 163 38 14 chr3 17654517 17654726 -200382432 - MER20 DNA MER1_type 0 219 6 350 392 20 7 chr3 17654747 17654895 -200382263 + L2 LINE L2 3123 3272 0 382 309 0 10 chr3 17654908 17655005 -200382153 - MIR3 SINE MIR -98 110 15 239 317 166 7 chr3 17655095 17655240 -200381918 - MIR SINE MIR -35 227 60 252 333 46 41 chr3 17655465 17655876 -200381282 + L1MEd LINE L1 511 923 -5196 * 384 227 55 0 chr3 17655865 17655975 -200381183 - L1MD3 LINE L1 -1 7994 7879 836 240 0 6 chr3 17656498 17656673 -200380485 + MLT1G1 LTR MaLR 1 174 -421 1134 158 0 30 chr3 17656678 17656881 -200380277 + Tigger2a DNA MER2_type 1 197 -237 1275 98 0 6 chr3 17656884 17657048 -200380110 - AluSg/x SINE Alu -17 295 133 1334 113 86 0 chr3 17657048 17657269 -200379889 + Tigger2a DNA MER2_type 195 434 0 722 231 23 33 chr3 17657273 17657634 -200379524 + MLT1G1 LTR MaLR 140 593 0 801 220 54 11 chr3 17658067 17658253 -200378905 - MIR SINE MIR -40 222 29 1820 191 25 27 chr3 17658490 17658660 -200378498 - MLT1A1 LTR MaLR 0 365 196 2755 90 98 5 chr3 17658660 17659070 -200378088 + LTR7 LTR ERV1 1 448 -2 1820 191 25 27 chr3 17659070 17659265 -200377893 - MLT1A1 LTR MaLR -169 196 1 400 282 0 8 chr3 17659315 17659439 -200377719 + L1ME3A LINE L1 4904 5026 -1120 1613 209 74 19 chr3 17659458 17659879 -200377279 + L1ME3A LINE L1 5718 6161 -9 376 223 96 81 chr3 17659935 17660132 -200377026 + L1MB7 LINE L1 5264 5463 -2345 5602 254 55 43 chr3 17660134 17660229 -200376929 + L1MEc LINE L1 10 102 -6294 291 85 0 0 chr3 17660229 17660276 -200376882 + (CA)n Simple_repeat Simple_repeat 2 48 0 5602 254 55 43 chr3 17660276 17661776 -200375382 + L1MEc LINE L1 102 1646 -4750 3350 184 37 18 chr3 17661776 17662076 -200375082 + L1MB7 LINE L1 5493 5786 -398 2513 162 18 0 chr3 17662076 17662465 -200374693 + MSTD LTR MaLR 1 396 0 3350 184 37 18 chr3 17662465 17662842 -200374316 + L1MB7 LINE L1 5786 6183 -1 5602 254 55 43 chr3 17662842 17663605 -200373553 + L1MEc LINE L1 1646 2398 -3998 3301 36 0 0 chr3 17663988 17664377 -200372781 - L1PA5 LINE L1 -7 6147 5759 349 45 0 0 chr3 17664378 17664422 -200372736 + L1PA5 LINE L1 5703 5746 -408 348 244 168 8 chr3 17664675 17664794 -200372364 - MIR SINE MIR -115 147 10 3233 236 53 52 chr3 17664900 17665213 -200371945 + L1MC4 LINE L1 6859 7170 -872 1842 139 10 33 chr3 17665213 17665514 -200371644 + AluJo SINE Alu 1 294 -18 3233 236 53 52 chr3 17665514 17666222 -200370936 + L1MC4 LINE L1 7170 7881 -161 237 398 82 17 chr3 17666898 17667129 -200370029 - L2 LINE L2 -1 3271 3026 559 288 6 6 chr3 17667390 17667550 -200369608 - MIR SINE MIR 0 262 103 193 304 240 0 chr3 17668074 17668199 -200368959 - MIR SINE MIR -11 251 97 807 271 152 27 chr3 17668214 17668616 -200368542 + L2 LINE L2 2861 3312 -1 537 44 0 0 chr3 17668801 17668869 -200368289 + (CAT)n Simple_repeat Simple_repeat 1 68 0 501 275 14 7 chr3 17668943 17669081 -200368077 - MIR SINE MIR -113 149 11 899 199 58 6 chr3 17669112 17669283 -200367875 - MER5A DNA MER1_type -9 180 1 336 189 0 0 chr3 17669881 17669955 -200367203 + CT-rich Low_complexity Low_complexity 1 74 0 807 284 126 25 chr3 17670382 17670893 -200366265 + L2 LINE L2 2677 3255 -58 219 88 0 0 chr3 17670918 17670952 -200366206 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 180 288 101 36 chr3 17671000 17671139 -200366019 - MIR SINE MIR -75 187 40 341 195 27 60 chr3 17672417 17672489 -200364669 + (TTATA)n Simple_repeat Simple_repeat 2 75 -105 211 71 48 0 chr3 17672489 17672531 -200364627 + (TATAA)n Simple_repeat Simple_repeat 5 48 0 341 195 27 60 chr3 17672531 17672643 -200364515 + (TTATA)n Simple_repeat Simple_repeat 75 180 0 310 138 26 101 chr3 17672560 17672749 -200364409 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 192 224 0 0 chr3 17673123 17673190 -200363968 + A-rich Low_complexity Low_complexity 1 67 0 426 280 63 21 chr3 17673321 17673510 -200363648 - MER117 DNA MER1_type 0 197 1 403 242 105 17 chr3 17673560 17673689 -200363469 - MIR SINE MIR -62 146 22 677 306 23 31 chr3 17674733 17674994 -200362164 - MIR SINE MIR -2 260 2 313 345 17 11 chr3 17675172 17675346 -200361812 + MER117 DNA MER1_type 6 180 -17 266 179 291 0 chr3 17675709 17675827 -200361331 - MIR SINE MIR -80 182 23 251 200 0 18 chr3 17675870 17675925 -200361233 + MER5B DNA MER1_type 119 172 -6 421 302 102 8 chr3 17675935 17676199 -200360959 - MIR SINE MIR -19 243 8 314 200 104 43 chr3 17676204 17676319 -200360839 + L1ME2 LINE L1 6041 6162 -2 480 229 49 33 chr3 17676561 17676683 -200360475 + L2 LINE L2 3147 3270 -2 982 166 13 0 chr3 17677126 17677283 -200359875 + FRAM SINE Alu 2 160 -6 426 221 55 19 chr3 17677737 17677865 -200359293 + MIR SINE MIR 60 191 -62 334 297 70 14 chr3 17677985 17678165 -200358993 + MIR SINE MIR 12 256 -6 375 250 30 0 chr3 17678675 17678775 -200358383 - MER5A DNA MER1_type -83 106 4 618 260 110 0 chr3 17679486 17679640 -200357518 - MER5B DNA MER1_type -6 172 2 2557 180 5 0 chr3 17680656 17681078 -200356080 - MSTB LTR MaLR 0 426 3 190 183 49 12 chr3 17681816 17681898 -200355260 + CT-rich Low_complexity Low_complexity 2 86 0 459 265 15 22 chr3 17682181 17682317 -200354841 - L2 LINE L2 0 3272 3138 274 318 120 19 chr3 17682859 17683117 -200354041 + L1MC/D LINE L1 5519 5802 -2006 292 250 217 0 chr3 17683152 17683244 -200353914 - MIR3 SINE MIR -8 200 89 724 213 45 93 chr3 17683530 17683747 -200353411 - MER113 DNA MER1_type? -191 330 104 1661 123 77 0 chr3 17683747 17684007 -200353151 + AluJb SINE Alu 1 280 -32 306 0 0 0 chr3 17684007 17684041 -200353117 + (TAA)n Simple_repeat Simple_repeat 2 35 0 724 213 45 93 chr3 17684041 17684156 -200353002 - MER113 DNA MER1_type? -415 106 13 1123 264 140 5 chr3 17684543 17685207 -200351951 - L2 LINE L2 0 3313 2565 402 296 22 15 chr3 17685524 17685659 -200351499 + L2 LINE L2 3137 3272 0 228 247 0 0 chr3 17685674 17685759 -200351399 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 1434 134 11 22 chr3 17685795 17685822 -200351336 - L1MA9 LINE L1 -17 6161 6135 638 153 9 0 chr3 17685822 17685933 -200351225 - L1MA9 LINE L1 -5 6307 6196 1434 134 11 22 chr3 17685933 17686171 -200350987 - L1MA9 LINE L1 -43 6135 5893 210 328 0 0 chr3 17686622 17686680 -200350478 - MIR SINE MIR -59 149 92 371 246 70 18 chr3 17686697 17686811 -200350347 - L2 LINE L2 -218 3054 2935 215 336 44 26 chr3 17686861 17686974 -200350184 - L2 LINE L2 -468 2846 2732 826 222 109 27 chr3 17687010 17687231 -200349927 + MIR SINE MIR 4 242 -20 210 320 39 39 chr3 17687299 17687402 -200349756 - L2 LINE L2 -606 2708 2606 1103 209 33 9 chr3 17687402 17687612 -200349546 + MER58A DNA MER1_type 8 222 -2 222 227 187 13 chr3 17688391 17688466 -200348692 + MIR SINE MIR 58 145 -117 566 206 44 37 chr3 17688777 17688913 -200348245 - MIR SINE MIR -56 152 16 479 326 62 6 chr3 17689216 17689394 -200347764 + MIR SINE MIR 15 202 -60 936 302 86 62 chr3 17690530 17691401 -200345757 + L2 LINE L2 1880 2771 -543 309 143 20 0 chr3 17691406 17691455 -200345703 - MER3 DNA MER1_type 0 209 160 683 198 41 0 chr3 17691464 17691585 -200345573 - FLAM_C SINE Alu -16 127 2 684 208 84 7 chr3 17691586 17691740 -200345418 - MER3 DNA MER1_type -43 166 1 270 328 148 15 chr3 17691740 17691968 -200345190 + L2 LINE L2 2769 3023 -249 331 109 0 31 chr3 17691977 17692041 -200345117 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 2039 122 71 40 chr3 17692041 17692394 -200344764 + THE1B LTR MaLR 1 364 0 5195 77 20 10 chr3 17692394 17693087 -200344071 + THE1B-int LTR MaLR 1 700 -880 4323 96 2 0 chr3 17693073 17693635 -200343523 + THE1B-int LTR MaLR 1018 1580 0 * 2103 135 72 29 chr3 17693635 17693984 -200343174 + THE1B LTR MaLR 1 364 0 913 131 17 0 chr3 17693998 17694173 -200342985 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 3267 173 41 0 chr3 17694913 17695498 -200341660 + L1MB3 LINE L1 5573 6181 -2 309 314 73 0 chr3 17696017 17696141 -200341017 - MIR SINE MIR -21 241 109 731 315 14 0 chr3 17696397 17696619 -200340539 - MIR SINE MIR -15 247 23 403 269 106 14 chr3 17696628 17696769 -200340389 + L2 LINE L2 3116 3269 -3 291 259 159 59 chr3 17697117 17697287 -200339871 - MER5A DNA MER1_type -1 188 2 559 291 42 12 chr3 17697697 17697862 -200339296 + MER5A DNA MER1_type 20 189 0 375 243 29 0 chr3 17697883 17697995 -200339163 + MER5A DNA MER1_type 4 119 -70 745 233 157 80 chr3 17698959 17699566 -200337592 - L2 LINE L2 -26 3287 2625 324 279 27 0 chr3 17699600 17699711 -200337447 + L2 LINE L2 2896 3009 -263 40233 53 4 1 chr3 17699886 17705628 -200331530 + L1PA5 LINE L1 399 6158 0 195 274 20 0 chr3 17705632 17705683 -200331475 + MIR SINE MIR 97 148 -114 215 104 83 42 chr3 17706016 17706064 -200331094 - MIR SINE MIR -78 130 81 353 299 174 43 chr3 17706146 17706330 -200330828 + MIR SINE MIR 50 257 -5 258 105 0 0 chr3 17706775 17706813 -200330345 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 427 285 0 83 chr3 17706942 17707047 -200330111 - L2 LINE L2 0 3313 3222 493 258 15 8 chr3 17707047 17707179 -200329979 + MER94 DNA DNA 1 133 -1 427 285 0 83 chr3 17707179 17707217 -200329941 - L2 LINE L2 -91 3222 3182 335 263 23 4 chr3 17707223 17707359 -200329799 - MIR SINE MIR -10 252 57 278 305 67 19 chr3 17707500 17707605 -200329553 - L2 LINE L2 -206 3066 2957 717 209 127 6 chr3 17708416 17708574 -200328584 + MER45A DNA AcHobo 1 177 -1 476 266 50 65 chr3 17708656 17708764 -200328394 - MIR SINE MIR -6 256 151 2633 206 39 0 chr3 17708764 17709299 -200327859 - MER74A LTR ERVL -2 556 1 476 266 50 65 chr3 17709299 17709389 -200327769 - MIR SINE MIR -111 151 61 673 264 35 22 chr3 17710446 17710673 -200326485 + MIR SINE MIR 31 260 -2 216 195 0 0 chr3 17711388 17711429 -200325729 + L2 LINE L2 3270 3310 -3 235 271 0 0 chr3 17711841 17711889 -200325269 + polypyrimidine Low_complexity Low_complexity 3 50 0 1236 263 59 28 chr3 17711913 17712304 -200324854 + MLT1I LTR MaLR 6 408 -1 259 222 246 48 chr3 17712659 17712826 -200324332 + L3 LINE CR1 1274 1473 -104 2057 173 34 8 chr3 17712979 17713361 -200323797 - MSTD LTR MaLR 0 396 5 315 301 26 7 chr3 17713385 17713538 -200323620 - HAL1b LINE L1 -14 1334 1179 655 287 20 15 chr3 17713605 17713800 -200323358 - L1ME LINE L1 -312 5809 5614 330 262 57 33 chr3 17714059 17714181 -200322977 - MIR SINE MIR -30 232 108 356 273 125 0 chr3 17714532 17714660 -200322498 - MLT1L LTR MaLR -52 563 420 500 224 48 8 chr3 17714733 17714858 -200322300 - MLT1L LTR MaLR -317 298 169 234 360 45 9 chr3 17715013 17715124 -200322034 + L2 LINE L2 3138 3252 -20 189 107 0 0 chr3 17715132 17715160 -200321998 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 457 274 97 10 chr3 17715488 17715679 -200321479 - MIR SINE MIR -14 248 40 498 269 39 8 chr3 17715872 17716002 -200321156 + MIR SINE MIR 20 153 -109 1605 234 66 80 chr3 17717146 17717522 -200319636 - MLT1H LTR MaLR 0 549 180 2036 99 43 127 chr3 17717522 17717917 -200319241 + THE1B LTR MaLR 3 364 0 1605 234 66 80 chr3 17717917 17718052 -200319106 - MLT1H LTR MaLR -369 180 45 338 312 55 30 chr3 17718237 17718439 -200318719 + L1MD2 LINE L1 5406 5612 -509 2356 191 63 39 chr3 17718441 17719008 -200318150 + L1MD2 LINE L1 5766 6346 -13 658 248 0 0 chr3 17719152 17719277 -200317881 - L2 LINE L2 0 3313 3189 413 233 60 9 chr3 17719505 17719621 -200317537 + L2 LINE L2 3180 3301 -12 261 234 141 0 chr3 17720960 17721046 -200316112 + MIR SINE MIR 49 157 -51 333 343 9 0 chr3 17721743 17721851 -200315307 - MIR SINE MIR -97 165 57 394 233 0 0 chr3 17721997 17722070 -200315088 - L2 LINE L2 -11 3302 3230 313 240 27 0 chr3 17722405 17722480 -200314678 + MIR SINE MIR 78 154 -108 453 62 0 0 chr3 17722501 17722566 -200314592 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 231 360 70 0 chr3 17723577 17723663 -200313495 - MIR SINE MIR -63 199 108 298 253 0 53 chr3 17724865 17724960 -200312198 + MIR SINE MIR 118 207 -55 2079 155 0 0 chr3 17725103 17725406 -200311752 - AluSx SINE Alu -7 305 3 629 294 36 4 chr3 17725625 17725848 -200311310 - MIR SINE MIR 0 262 35 228 204 0 0 chr3 17726030 17726074 -200311084 + MIR SINE MIR 108 151 -111 250 235 62 12 chr3 17726235 17726316 -200310842 + MIR SINE MIR 166 250 -12 2490 72 0 0 chr3 17726321 17726614 -200310544 - AluY SINE Alu -18 293 1 225 154 0 0 chr3 17726920 17726959 -200310199 + A-rich Low_complexity Low_complexity 1 39 0 425 281 110 0 chr3 17727278 17727442 -200309716 - MER91A DNA MER1_type -5 191 10 222 37 0 0 chr3 17727444 17727471 -200309687 + (CA)n Simple_repeat Simple_repeat 1 27 0 278 230 0 68 chr3 17727801 17727875 -200309283 - MIR SINE MIR -70 192 124 273 320 16 16 chr3 17728250 17728375 -200308783 - MARNA DNA Mariner -114 472 348 1015 259 108 28 chr3 17728481 17728906 -200308252 - MLT1K LTR MaLR -4 584 126 712 115 0 69 chr3 17729049 17729179 -200307979 + FRAM SINE Alu 26 146 -30 405 265 9 0 chr3 17729179 17729287 -200307871 - L1MCa LINE L1 -1339 6983 1995 396 255 0 66 chr3 17729214 17729320 -200307838 + L1MC4 LINE L1 6614 6712 -1330 * 511 269 163 29 chr3 17729699 17730048 -200307110 - MER113 DNA MER1_type? -125 396 1 267 319 130 32 chr3 17730369 17730585 -200306573 + MIR SINE MIR 20 256 -6 433 302 133 44 chr3 17731198 17731701 -200305457 + L2 LINE L2 2240 2787 -527 581 284 147 4 chr3 17731857 17732082 -200305076 + Charlie8 DNA MER1_type 9 265 -2152 346 316 26 0 chr3 17732522 17732636 -200304522 - MIR SINE MIR -29 233 117 1357 212 3 35 chr3 17732837 17732926 -200304232 + AluJo SINE Alu 33 123 -189 2375 105 0 0 chr3 17732926 17733221 -200303937 - AluSx SINE Alu -17 295 1 1357 212 3 35 chr3 17733221 17733419 -200303739 + AluJo SINE Alu 123 311 -1 423 245 46 58 chr3 17733449 17733625 -200303533 + MIR SINE MIR 42 214 -48 267 237 158 0 chr3 17734067 17734143 -200303015 + L2 LINE L2 3179 3266 -6 297 0 0 0 chr3 17734153 17734186 -200302972 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 741 93 0 0 chr3 17734185 17734292 -200302866 + (GA)n Simple_repeat Simple_repeat 2 108 0 185 178 22 0 chr3 17734438 17734483 -200302675 + MIR SINE MIR 70 115 -147 1090 141 0 12 chr3 17735551 17735714 -200301444 + FRAM SINE Alu 2 162 -14 301 398 47 21 chr3 17735923 17736202 -200300956 + L2 LINE L2 2985 3270 -2 375 280 47 23 chr3 17737280 17737429 -200299729 - L1MC4 LINE L1 -1306 7016 1995 471 311 89 26 chr3 17739026 17739216 -200297942 + MIR SINE MIR 59 260 -2 1303 288 104 18 chr3 17739495 17740093 -200297065 + L2 LINE L2 1792 2440 -874 1558 273 71 53 chr3 17740119 17740819 -200296339 + MER21B LTR ERV1 25 737 -126 1021 264 190 10 chr3 17740835 17741548 -200295610 + L2 LINE L2 2458 3313 0 449 271 15 41 chr3 17741819 17742000 -200295158 + MIR SINE MIR 19 192 -62 456 299 85 24 chr3 17742321 17742615 -200294543 - L2 LINE L2 -419 2895 2584 196 208 42 0 chr3 17742669 17742717 -200294441 - L2 LINE L2 -831 2483 2434 1962 168 54 0 chr3 17743416 17743786 -200293372 + MLT1B LTR MaLR 1 390 0 719 289 61 48 chr3 17744017 17744539 -200292619 - L1ME4a LINE L1 -3 6118 5590 378 262 14 64 chr3 17744808 17744949 -200292209 - MIR SINE MIR -118 144 11 624 276 113 0 chr3 17745424 17745645 -200291513 + MIR SINE MIR 11 256 -6 1101 259 71 25 chr3 17747740 17748188 -200288970 - LTR33 LTR ERVL -52 469 1 259 250 48 29 chr3 17748732 17748836 -200288322 - MIR3 SINE MIR -41 167 62 433 217 22 0 chr3 17749008 17749100 -200288058 - MIR SINE MIR -58 150 100 574 304 31 5 chr3 17750138 17750329 -200286829 + MIR SINE MIR 43 238 -24 1875 148 34 17 chr3 17750331 17750629 -200286529 - AluJo SINE Alu -4 308 6 405 304 17 0 chr3 17751156 17751271 -200285887 + MIR3 SINE MIR 42 158 -50 437 214 62 9 chr3 17751337 17751449 -200285709 - MER103 DNA DNA -46 120 3 196 276 0 0 chr3 17751499 17751557 -200285601 + MIR3 SINE MIR 151 208 0 347 67 0 33 chr3 17751962 17752022 -200285136 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 983 217 70 60 chr3 17753061 17753430 -200283728 - MER113 DNA MER1_type? -147 374 2 290 273 40 0 chr3 17753430 17753529 -200283629 - MIR3 SINE MIR -47 161 59 594 234 0 0 chr3 17753764 17753982 -200283176 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 468 0 0 0 chr3 17754142 17754194 -200282964 + (CA)n Simple_repeat Simple_repeat 2 53 0 315 350 56 12 chr3 17754223 17754383 -200282775 + MIR3 SINE MIR 16 182 -26 385 298 63 13 chr3 17754754 17754912 -200282246 + MIR SINE MIR 37 202 -60 641 315 106 17 chr3 17754975 17755648 -200281510 - L2 LINE L2 0 3313 2572 2615 216 17 25 chr3 17756034 17756622 -200280536 + MER82 DNA MER2_type 1 583 -70 290 253 94 6 chr3 17756811 17756969 -200280189 - MIR SINE MIR -70 192 14 3152 71 11 13 chr3 17757439 17757887 -200279271 - L1PA13 LINE L1 0 6163 5717 258 200 83 0 chr3 17757895 17757955 -200279203 + MIR SINE MIR 79 143 -119 242 257 71 82 chr3 17758013 17758197 -200278961 - MIR SINE MIR -50 212 32 642 262 112 5 chr3 17758295 17758509 -200278649 + MIR SINE MIR 13 249 -13 557 241 83 7 chr3 17758649 17758794 -200278364 - MIR SINE MIR -92 170 15 208 322 111 0 chr3 17759275 17759365 -200277793 + MIR SINE MIR 25 124 -84 457 261 150 42 chr3 17759382 17759669 -200277489 + MER102b DNA MER1_type 22 339 -2 180 237 0 0 chr3 17759789 17759827 -200277331 + L2 LINE L2 3267 3304 -9 704 267 26 10 chr3 17760348 17760543 -200276615 + MIR SINE MIR 15 212 -50 331 215 0 0 chr3 17761338 17761403 -200275755 + MLT1L LTR MaLR 327 391 -224 399 267 48 0 chr3 17762439 17762544 -200274614 - Charlie8 DNA MER1_type -2235 182 73 8155 230 65 13 chr3 17763799 17766333 -200270825 + L1MEc LINE L1 35 2657 -3558 625 226 0 30 chr3 17766331 17766495 -200270663 + L1M4 LINE L1 5046 5204 -942 * 857 173 73 17 chr3 17766574 17766753 -200270405 - MLT1A1 LTR MaLR -7 358 170 24 0 0 0 chr3 17767144 17767168 -200269990 + GC_rich Low_complexity Low_complexity 1 24 0 225 94 0 0 chr3 17767401 17767433 -200269725 + (CCG)n Simple_repeat Simple_repeat 3 34 0 279 241 43 0 chr3 17767453 17767569 -200269589 + (CCG)n Simple_repeat Simple_repeat 3 123 0 * 308 270 26 26 chr3 17767491 17767643 -200269515 + C-rich Low_complexity Low_complexity 4 155 0 586 315 26 39 chr3 17769651 17769959 -200267199 - Charlie8 DNA MER1_type -2073 344 41 251 340 19 0 chr3 17770193 17770296 -200266862 + MIR SINE MIR 45 149 -59 213 39 0 0 chr3 17770299 17770325 -200266833 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 17771405 17771427 -200265731 + AT_rich Low_complexity Low_complexity 1 22 0 1759 172 3 3 chr3 17971738 17972023 -200065135 - AluJb SINE Alu -27 285 1 2434 82 3 13 chr3 17972029 17972345 -200064813 - AluSp SINE Alu 0 313 1 261 149 21 0 chr3 17972352 17972399 -200064759 + L1MD1 LINE L1 6182 6229 -13 325 229 119 37 chr3 17972490 17972599 -200064559 - L2 LINE L2 -8 3305 3188 217 214 71 0 chr3 17972726 17972782 -200064376 + MIR SINE MIR 196 255 -7 2400 85 3 0 chr3 17972985 17973290 -200063868 + AluSq SINE Alu 1 306 -7 310 247 12 12 chr3 17973582 17973663 -200063495 - MER5A DNA MER1_type -84 105 25 690 318 8 13 chr3 17973698 17973934 -200063224 + MIR SINE MIR 28 262 0 2284 113 6 3 chr3 17974140 17974451 -200062707 - AluSx SINE Alu 0 312 1 337 213 43 32 chr3 17974473 17974567 -200062591 - MER117 DNA MER1_type -47 150 56 185 331 150 24 chr3 17974604 17974731 -200062427 - MIR3 SINE MIR -48 160 18 1776 171 0 4 chr3 17975231 17975505 -200061653 + AluJb SINE Alu 1 273 -39 838 170 0 22 chr3 17975505 17975767 -200061391 + GA-rich Low_complexity Low_complexity 1 256 0 223 245 0 20 chr3 17975767 17975816 -200061342 + polypurine Low_complexity Low_complexity 1 48 0 838 165 90 66 chr3 17975954 17976166 -200060992 + MER20 DNA MER1_type 1 217 -2 219 284 15 15 chr3 17977099 17977166 -200059992 + MER5B DNA MER1_type 2 68 -110 330 269 21 11 chr3 17977881 17977974 -200059184 + L2 LINE L2 3179 3272 0 223 365 52 9 chr3 17979076 17979191 -200057967 + MIR SINE MIR 16 135 -73 1877 156 0 10 chr3 17979934 17980241 -200056917 - AluJo SINE Alu -8 304 1 196 260 83 42 chr3 17981181 17981277 -200055881 - L2 LINE L2 -64 3208 3109 2447 73 3 10 chr3 17981292 17981640 -200055518 - AluSp SINE Alu 0 346 1 2507 57 3 3 chr3 17981891 17982188 -200054970 + AluY SINE Alu 1 297 -14 311 262 29 19 chr3 17982224 17982327 -200054831 + MIR SINE MIR 51 154 -108 201 189 38 0 chr3 17982669 17982722 -200054436 + (TTG)n Simple_repeat Simple_repeat 3 57 0 24 0 0 0 chr3 17982838 17982862 -200054296 + AT_rich Low_complexity Low_complexity 1 24 0 2079 133 0 3 chr3 17983438 17983782 -200053376 - AluSx SINE Alu 0 312 1 385 307 70 35 chr3 17984134 17984362 -200052796 + MLT1K LTR MaLR 345 580 -8 545 242 47 56 chr3 17984644 17984859 -200052299 + MLT1L LTR MaLR 195 407 -208 2147 132 3 0 chr3 17985447 17985758 -200051400 + AluSx SINE Alu 1 312 0 339 69 0 69 chr3 17985896 17985954 -200051204 - MADE1 DNA Mariner -26 54 1 2076 106 48 0 chr3 17985980 17986272 -200050886 + AluSx SINE Alu 1 306 -6 620 286 17 6 chr3 17986368 17986543 -200050615 + MIR3 SINE MIR 21 197 -11 412 162 0 0 chr3 17986930 17986998 -200050160 - Alu SINE Alu -5 307 240 2804 26 0 0 chr3 17987112 17987423 -200049735 - AluY SINE Alu 0 311 1 526 304 90 29 chr3 17987695 17987979 -200049179 - L2 LINE L2 0 3272 2962 2503 47 10 7 chr3 17987979 17988280 -200048878 + AluY SINE Alu 1 302 -9 526 304 90 29 chr3 17988280 17988341 -200048817 - L2 LINE L2 -310 2962 2906 606 308 145 6 chr3 17988342 17988660 -200048498 - L2 LINE L2 -513 2801 2440 1471 186 90 4 chr3 17989574 17989853 -200047305 + AluJb SINE Alu 1 303 -9 235 306 192 29 chr3 17989886 17990131 -200047027 + MARNA DNA Mariner 125 409 -177 807 151 66 0 chr3 17990133 17990285 -200046873 - FRAM SINE Alu -15 161 1 288 319 26 9 chr3 17990721 17990837 -200046321 + L2 LINE L2 3193 3310 -3 551 220 57 0 chr3 17990988 17991129 -200046029 - MER5A DNA MER1_type -32 157 9 189 0 0 0 chr3 17991307 17991328 -200045830 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2260 101 0 3 chr3 17991386 17991683 -200045475 + AluSx SINE Alu 12 307 -5 2996 142 12 8 chr3 17992224 17992739 -200044419 + L1MB3 LINE L1 5660 6176 -7 2292 196 88 70 chr3 17992756 17992898 -200044260 + L1ME2 LINE L1 5429 5567 -597 2432 56 7 13 chr3 17992898 17993201 -200043957 + AluY SINE Alu 1 301 -10 2292 196 88 70 chr3 17993201 17993512 -200043646 + L1ME2 LINE L1 5567 5871 -293 1736 159 52 4 chr3 17993512 17993815 -200043343 - AluJo SINE Alu 0 316 1 2292 196 88 70 chr3 17993815 17993947 -200043211 + L1ME2 LINE L1 5871 5999 -165 2125 122 3 0 chr3 17993947 17994241 -200042917 - AluSx SINE Alu -17 295 1 2292 196 88 70 chr3 17994241 17994365 -200042793 + L1ME2 LINE L1 5999 6154 -10 1956 131 17 14 chr3 17994370 17994667 -200042491 + AluJo SINE Alu 5 302 -10 1095 176 75 24 chr3 17994842 17995097 -200042061 + ORSL DNA AcHobo 6 273 -2 2330 73 0 0 chr3 17995223 17995511 -200041647 + AluY SINE Alu 24 311 0 211 375 0 0 chr3 17995691 17995755 -200041403 - L2 LINE L2 -3 3269 3206 263 287 0 21 chr3 17995790 17995884 -200041274 - MIR3 SINE MIR -108 100 9 26 30 0 0 chr3 17996176 17996209 -200040949 + AT_rich Low_complexity Low_complexity 1 33 0 5886 142 77 39 chr3 17996296 17996899 -200040259 - Tigger3b DNA MER2_type -1797 1231 652 2264 95 3 0 chr3 17996899 17997193 -200039965 - AluSg SINE Alu -15 295 1 5886 142 77 39 chr3 17997193 17997775 -200039383 - Tigger3b DNA MER2_type -2376 652 1 27 0 0 0 chr3 17997845 17997872 -200039286 + AT_rich Low_complexity Low_complexity 1 27 0 607 108 0 0 chr3 17997908 17997991 -200039167 - AluJb SINE Alu -35 277 195 2105 117 0 17 chr3 17998240 17998538 -200038620 + AluSx SINE Alu 1 293 -19 296 235 0 0 chr3 17998881 17998949 -200038209 - MER5A DNA MER1_type -83 106 39 1052 185 95 18 chr3 17998984 17999206 -200037952 + MER8 DNA MER2_type 1 239 0 186 179 51 0 chr3 18000206 18000245 -200036913 - L2 LINE L2 -2128 1186 1146 2123 246 154 43 chr3 18000530 18001283 -200035875 + HAL1 LINE L1 661 1568 -939 2448 90 7 0 chr3 18001283 18001593 -200035565 + AluSx SINE Alu 1 312 0 2123 246 154 43 chr3 18001593 18001902 -200035256 + HAL1 LINE L1 1568 1841 -666 398 243 69 58 chr3 18001953 18002142 -200035016 - MIR SINE MIR -26 236 46 2222 114 0 13 chr3 18002611 18002926 -200034232 + AluSx SINE Alu 1 311 -1 2527 53 0 26 chr3 18003657 18003995 -200033163 + AluY SINE Alu 1 330 0 32 26 0 0 chr3 18004474 18004513 -200032645 + AT_rich Low_complexity Low_complexity 1 39 0 1726 172 14 17 chr3 18004829 18005126 -200032032 - AluJb SINE Alu -16 296 1 1695 101 141 25 chr3 18005210 18005487 -200031671 + AluSx SINE Alu 1 309 -3 223 231 64 13 chr3 18005645 18005723 -200031435 - L2 LINE L2 -310 3003 2922 1743 147 3 42 chr3 18005835 18005979 -200031179 + AluSx SINE Alu 1 130 -182 2450 91 0 3 chr3 18005979 18006287 -200030871 + AluSx SINE Alu 1 307 -5 1743 147 3 42 chr3 18006287 18006428 -200030730 + AluSx SINE Alu 130 275 -37 383 313 91 5 chr3 18006513 18006711 -200030447 + L3 LINE CR1 1339 1553 -24 2488 110 3 29 chr3 18006783 18006803 -200030355 + L1P5 LINE L1 5421 5440 -714 2008 94 83 0 chr3 18006803 18007079 -200030079 + AluSx SINE Alu 1 299 -13 2488 110 3 29 chr3 18007079 18007432 -200029726 + L1P5 LINE L1 5440 5784 -370 1391 137 24 0 chr3 18007432 18007637 -200029521 + AluSx SINE Alu 59 268 -44 1969 150 7 0 chr3 18007789 18008075 -200029083 + AluSx SINE Alu 4 291 -21 1930 163 0 20 chr3 18008237 18008538 -200028620 - AluJo SINE Alu -17 295 1 243 0 0 0 chr3 18008588 18008615 -200028543 + (TG)n Simple_repeat Simple_repeat 2 28 0 3141 139 29 0 chr3 18008689 18009058 -200028100 - L1PA14 LINE L1 -1 6160 5770 2321 101 0 0 chr3 18009058 18009354 -200027804 - AluSg SINE Alu -14 296 1 3141 139 29 0 chr3 18009354 18009500 -200027658 - L1PA14 LINE L1 -391 5770 5630 650 188 8 0 chr3 18009500 18009633 -200027525 + L1MB3 LINE L1 5198 5331 -815 549 176 0 0 chr3 18009633 18009718 -200027440 + FRAM SINE Alu 71 155 -21 4609 142 61 7 chr3 18009726 18010544 -200026614 + L1MB3 LINE L1 5320 6181 -2 496 284 60 40 chr3 18010661 18010911 -200026247 - MER112 DNA MER1_type -5 255 1 313 265 68 56 chr3 18011044 18011293 -200025865 - L1M4 LINE L1 -1487 4659 4408 848 162 0 7 chr3 18011325 18011467 -200025691 - FLAM_C SINE Alu -2 141 1 517 287 144 50 chr3 18011509 18012254 -200024904 - L1M4 LINE L1 -1810 4336 3522 308 285 81 49 chr3 18012335 18012581 -200024577 - L1M4 LINE L1 -2745 3401 3148 2169 99 7 14 chr3 18012594 18012888 -200024270 + AluSx SINE Alu 1 292 -20 261 194 24 10 chr3 18012916 18012979 -200024179 + L1MA8 LINE L1 5994 6059 -253 308 304 168 20 chr3 18013294 18013544 -200023614 - HAL1 LINE L1 -1409 1098 812 243 235 49 37 chr3 18014177 18014258 -200022900 - HAL1 LINE L1 -2413 94 13 189 0 0 0 chr3 18015011 18015032 -200022126 + (TTG)n Simple_repeat Simple_repeat 2 22 0 412 294 9 0 chr3 18015154 18015260 -200021898 + Charlie8 DNA MER1_type 103 209 -2208 701 101 74 81 chr3 18015260 18015418 -200021740 + MER63 DNA MER1_type 4 1651 -37 210 309 151 0 chr3 18015623 18015762 -200021396 + L3 LINE CR1 1050 1209 -368 1829 170 0 3 chr3 18016742 18017030 -200020128 + AluJb SINE Alu 1 287 -25 1862 91 4 0 chr3 18017155 18017397 -200019761 - AluSg/x SINE Alu 0 312 70 380 71 18 0 chr3 18017400 18017456 -200019702 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 235 241 126 0 chr3 18017496 18017583 -200019575 - MIR SINE MIR -70 192 95 303 98 0 0 chr3 18017708 18017749 -200019409 + Alu SINE Alu 1 41 -261 2168 122 10 0 chr3 18017749 18018053 -200019105 + AluSx SINE Alu 5 311 -1 2392 97 0 3 chr3 18018059 18018370 -200018788 + AluSg SINE Alu 1 310 0 993 140 27 0 chr3 18018955 18019105 -200018053 + AluJb SINE Alu 137 290 -22 2032 132 28 0 chr3 18019484 18019773 -200017385 - AluSx SINE Alu -15 297 1 563 237 0 6 chr3 18019789 18019962 -200017196 + CT-rich Low_complexity Low_complexity 2 173 0 246 340 19 19 chr3 18019968 18020071 -200017087 - L2 LINE L2 -26 3287 3185 780 293 37 28 chr3 18020177 18020596 -200016562 - L2 LINE L2 -169 3144 2713 2229 126 0 0 chr3 18020596 18020905 -200016253 - AluSx SINE Alu -3 309 1 780 293 37 28 chr3 18020905 18020966 -200016192 - L2 LINE L2 -600 2713 2654 873 127 6 73 chr3 18020971 18021104 -200016054 - LTR34 LTR ERV1 -542 157 35 2469 61 0 10 chr3 18021104 18021401 -200015757 - AluY SINE Alu -17 294 1 873 127 6 73 chr3 18021401 18021432 -200015726 - LTR34 LTR ERV1 -664 35 4 922 204 104 12 chr3 18021465 18021705 -200015453 - MLT1J2 LTR MaLR -123 327 66 397 288 70 41 chr3 18021798 18022041 -200015117 - L2 LINE L2 -830 2484 2235 382 200 129 43 chr3 18022217 18022357 -200014801 - L2 LINE L2 -4 3309 3158 2376 69 3 47 chr3 18022360 18022680 -200014478 + AluY SINE Alu 1 306 -5 2036 136 7 0 chr3 18022687 18022973 -200014185 + AluJo SINE Alu 4 291 -21 1722 170 0 4 chr3 18023002 18023267 -200013891 + AluJb SINE Alu 45 308 -4 722 260 12 54 chr3 18023342 18023600 -200013558 - L2 LINE L2 -263 3050 2804 275 316 8 8 chr3 18024698 18024815 -200012343 + LTR67 LTR ERVL 435 551 -6 2380 70 3 0 chr3 18024890 18025225 -200011933 - AluSp SINE Alu 0 336 1 560 311 42 42 chr3 18025835 18026028 -200011130 + MIR SINE MIR 13 205 -57 615 220 119 6 chr3 18026341 18026509 -200010649 + MER5A DNA MER1_type 3 189 0 242 332 16 47 chr3 18026521 18026724 -200010434 + L2 LINE L2 2773 2961 -311 437 191 10 13 chr3 18026935 18027035 -200010123 + MLT1J LTR MaLR 63 199 -265 1198 134 0 0 chr3 18027131 18027303 -200009855 + AluSg/x SINE Alu 135 306 -4 339 276 71 0 chr3 18027482 18027580 -200009578 + L2 LINE L2 3167 3271 -1 185 0 40 0 chr3 18027683 18027708 -200009450 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 196 329 27 14 chr3 18027810 18027883 -200009275 + L2 LINE L2 2714 2787 -527 787 269 20 0 chr3 18028348 18028549 -200008609 + MIR SINE MIR 1 205 -57 2199 123 10 3 chr3 18028742 18029042 -200008116 + AluSq SINE Alu 1 302 -11 363 192 40 139 chr3 18029415 18029452 -200007706 + L1MC4 LINE L1 7782 7821 -221 2478 84 0 0 chr3 18029452 18029750 -200007408 - AluSg1 SINE Alu -11 298 1 363 192 40 139 chr3 18029750 18029863 -200007295 + L1MC4 LINE L1 7821 7917 -125 472 265 14 115 chr3 18030977 18031135 -200006023 - MER112 DNA MER1_type 0 260 88 1703 162 3 30 chr3 18031135 18031437 -200005721 - AluJo SINE Alu -10 302 9 472 265 14 115 chr3 18031437 18031515 -200005643 - MER112 DNA MER1_type -172 88 55 1804 150 0 20 chr3 18031515 18031809 -200005349 - AluJo SINE Alu -24 288 1 472 265 14 115 chr3 18031809 18031858 -200005300 - MER112 DNA MER1_type -205 55 3 1937 131 3 37 chr3 18032624 18032921 -200004237 + AluSx SINE Alu 6 292 -20 1901 164 3 20 chr3 18033927 18034225 -200002933 + AluSx SINE Alu 1 293 -19 221 284 55 64 chr3 18034960 18035069 -200002089 + L3 LINE CR1 1012 1119 -458 2381 167 60 0 chr3 18035477 18035879 -200001279 + MSTB LTR MaLR 1 426 0 341 243 153 21 chr3 18036003 18036148 -200001010 - MIR SINE MIR -62 146 30 2042 123 0 60 chr3 18036730 18037046 -200000112 + AluSx SINE Alu 1 297 -15 451 150 0 0 chr3 18037079 18037159 -199999999 + FLAM_C SINE Alu 62 141 -2 1052 94 0 0 chr3 18038369 18038497 -199998661 + AluSq/x SINE Alu 6 133 -180 2453 86 0 6 chr3 18038501 18038816 -199998342 + AluSp SINE Alu 1 313 0 238 211 145 13 chr3 18039047 18039123 -199998035 + MER103 DNA DNA 3 88 -78 1910 41 5 0 chr3 18040119 18040340 -199996818 + AluY SINE Alu 77 298 -13 1830 153 3 42 chr3 18041447 18041755 -199995403 + AluJb SINE Alu 12 307 -5 1714 164 3 33 chr3 18041974 18042278 -199994880 + AluJo SINE Alu 5 299 -13 555 200 54 0 chr3 18042459 18042589 -199994569 + MIR SINE MIR 56 192 -70 242 323 117 49 chr3 18042677 18043035 -199994123 - L2 LINE L2 -194 3078 2707 1934 149 10 7 chr3 18043182 18043483 -199993675 + AluSx SINE Alu 1 302 -10 2296 108 0 3 chr3 18043558 18043863 -199993295 + AluSg SINE Alu 1 304 -6 2589 135 47 0 chr3 18044258 18044665 -199992493 - MSTB LTR MaLR 0 426 1 2294 108 3 0 chr3 18045220 18045516 -199991642 + AluSx SINE Alu 1 297 -15 2167 134 0 10 chr3 18045525 18045660 -199991498 + AluJb SINE Alu 1 136 -176 1942 84 42 90 chr3 18045660 18045970 -199991188 + AluY SINE Alu 1 295 -16 2167 134 0 10 chr3 18045970 18046139 -199991019 + AluJb SINE Alu 136 302 -10 184 350 0 0 chr3 18046595 18046655 -199990503 - L2 LINE L2 -1 3271 3212 * 203 275 55 83 chr3 18046635 18046744 -199990414 + MIR SINE MIR 59 164 -98 212 297 242 11 chr3 18046985 18047076 -199990082 - MIR SINE MIR -81 127 16 251 28 28 0 chr3 18047957 18047993 -199989165 + (TA)n Simple_repeat Simple_repeat 2 38 0 996 132 0 0 chr3 18048810 18048946 -199988212 + AluSq/x SINE Alu 1 136 -176 230 159 0 0 chr3 18048946 18048990 -199988168 + A-rich Low_complexity Low_complexity 1 44 0 2578 47 7 0 chr3 18049255 18049552 -199987606 + AluY SINE Alu 1 299 -12 2370 97 3 0 chr3 18049733 18050032 -199987126 - AluSx SINE Alu -12 300 1 3250 213 9 8 chr3 18050035 18050420 -199986738 + MER82 DNA MER2_type 8 396 -257 2498 81 7 0 chr3 18050420 18050728 -199986430 + AluSq SINE Alu 1 310 -3 3250 213 9 8 chr3 18050728 18050986 -199986172 + MER82 DNA MER2_type 396 652 -1 509 187 0 9 chr3 18051476 18051583 -199985575 - MER82 DNA MER2_type -170 483 378 732 120 14 78 chr3 18051897 18052039 -199985119 - FLAM_C SINE Alu 0 133 1 298 236 149 40 chr3 18052198 18052372 -199984786 - MIR SINE MIR -38 224 32 225 301 86 55 chr3 18052702 18052865 -199984293 - MIR3 SINE MIR -31 177 10 369 314 157 0 chr3 18056324 18056464 -199980694 + MIR SINE MIR 21 182 -80 232 290 80 12 chr3 18057017 18057179 -199979979 + L1MB8 LINE L1 5769 5941 -237 1288 127 5 39 chr3 18057237 18057297 -199979861 + AluSg/x SINE Alu 79 140 -172 2179 105 21 0 chr3 18057297 18057582 -199979576 + AluSg SINE Alu 1 291 -19 1288 127 5 39 chr3 18057582 18057726 -199979432 + AluSg/x SINE Alu 140 276 -36 245 29 0 29 chr3 18057727 18057762 -199979396 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2096 153 0 3 chr3 18057906 18058219 -199978939 + AluJo SINE Alu 1 312 0 285 230 46 0 chr3 18058446 18058533 -199978625 + L1MC5 LINE L1 7771 7861 -100 225 0 0 0 chr3 18058628 18058653 -199978505 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2342 104 10 0 chr3 18058663 18058970 -199978188 - AluSx SINE Alu -2 310 1 2171 112 0 60 chr3 18058972 18059303 -199977855 - AluSx SINE Alu -1 311 1 186 43 0 0 chr3 18060017 18060040 -199977118 + (TTC)n Simple_repeat Simple_repeat 2 24 0 2352 103 0 0 chr3 18060042 18060334 -199976824 - AluSq SINE Alu -21 292 1 207 203 0 149 chr3 18060657 18060731 -199976427 + L2 LINE L2 3209 3271 -1 2191 130 7 0 chr3 18061057 18061365 -199975793 + AluSg SINE Alu 1 310 0 2336 88 3 0 chr3 18061376 18061689 -199975469 + AluSx SINE Alu 1 314 0 412 341 71 62 chr3 18061792 18062229 -199974929 + L2 LINE L2 2830 3270 -2 617 225 81 17 chr3 18062876 18063049 -199974109 + MIR SINE MIR 79 262 0 2539 81 3 0 chr3 18063136 18063445 -199973713 - AluSp SINE Alu -3 310 1 590 329 24 0 chr3 18063445 18063652 -199973506 + MIR SINE MIR 39 250 -12 306 235 276 6 chr3 18063861 18064031 -199973127 - MIR SINE MIR -8 254 39 2120 101 52 3 chr3 18065030 18065317 -199971841 + AluSx SINE Alu 1 301 -11 1658 179 29 32 chr3 18065358 18065671 -199971487 + AluJo SINE Alu 1 312 0 2217 98 0 44 chr3 18066271 18066586 -199970572 - AluY SINE Alu -10 301 1 1742 145 7 31 chr3 18066590 18066879 -199970279 - AluJb SINE Alu -24 288 7 2017 128 0 52 chr3 18067074 18067402 -199969756 + AluJo SINE Alu 1 311 -1 279 211 0 0 chr3 18067418 18067470 -199969688 + LTR30 LTR ERV1 1 52 -670 1444 129 179 150 chr3 18067470 18067961 -199969197 + LTR12 LTR ERV1 100 581 -133 189 277 123 0 chr3 18067970 18068035 -199969123 + L2 LINE L2 3186 3258 -14 2317 113 0 0 chr3 18068636 18068936 -199968222 + AluSx SINE Alu 1 300 -12 1878 151 0 18 chr3 18069417 18069702 -199967456 + AluJo SINE Alu 1 280 -32 2551 59 10 0 chr3 18069831 18070138 -199967020 + AluY SINE Alu 1 310 -1 564 214 75 75 chr3 18070653 18070813 -199966345 + MIR SINE MIR 2 164 -98 2450 96 0 0 chr3 18070813 18071116 -199966042 + AluSx SINE Alu 1 303 -9 564 214 75 75 chr3 18071116 18071156 -199966002 + MIR SINE MIR 163 202 -60 1336 145 0 0 chr3 18071349 18071542 -199965616 + AluSx SINE Alu 1 193 -119 1206 128 6 0 chr3 18071558 18071753 -199965405 + AluY SINE Alu 112 307 0 1913 152 0 0 chr3 18071852 18072128 -199965030 + AluJb SINE Alu 1 276 -36 2467 64 7 7 chr3 18072236 18072531 -199964627 + AluY SINE Alu 3 297 -14 2517 88 0 0 chr3 18073016 18073324 -199963834 + AluSx SINE Alu 3 310 -2 263 129 129 48 chr3 18073739 18073801 -199963357 - MIR SINE MIR -187 75 9 232 324 0 0 chr3 18073833 18073901 -199963257 + L2 LINE L2 3204 3271 -1 1869 115 80 3 chr3 18074127 18074413 -199962745 + AluSq SINE Alu 1 308 -5 1861 149 7 10 chr3 18074496 18074791 -199962367 - AluJb SINE Alu -18 294 1 417 289 35 7 chr3 18075020 18075162 -199961996 - MIR SINE MIR -69 193 48 2001 129 26 7 chr3 18075340 18075643 -199961515 - AluJb SINE Alu -1 311 3 2606 58 0 0 chr3 18075833 18076141 -199961017 - AluY SINE Alu -3 308 1 516 266 34 44 chr3 18076652 18076881 -199960277 - MIR SINE MIR -1 261 32 2229 118 3 0 chr3 18077053 18077350 -199959808 - AluSx SINE Alu -14 298 1 1767 167 6 16 chr3 18077506 18077817 -199959341 - AluJb SINE Alu -4 308 1 37 0 0 0 chr3 18077866 18077903 -199959255 + AT_rich Low_complexity Low_complexity 1 37 0 1621 179 10 13 chr3 18077917 18078218 -199958940 - AluJo SINE Alu -12 300 1 928 131 0 38 chr3 18078227 18078387 -199958771 - L1MD1 LINE L1 0 6242 6089 2285 106 0 0 chr3 18078425 18078718 -199958440 - AluSx SINE Alu -19 293 1 1200 182 27 141 chr3 18078730 18078976 -199958182 - L1MD1 LINE L1 -445 5739 5576 2337 88 3 0 chr3 18078976 18079272 -199957886 - AluSg SINE Alu -13 297 1 1200 182 27 141 chr3 18079272 18079482 -199957676 - L1MD1 LINE L1 -608 5576 5344 1773 181 3 3 chr3 18079488 18079787 -199957371 - AluJb SINE Alu -13 299 1 300 362 31 39 chr3 18080094 18080351 -199956807 - L2 LINE L2 -86 3186 2932 1714 122 4 4 chr3 18080464 18080701 -199956457 - AluSx SINE Alu -37 275 39 180 0 0 0 chr3 18080705 18080725 -199956433 + (T)n Simple_repeat Simple_repeat 1 20 0 761 233 15 68 chr3 18080808 18081014 -199956144 - MER58A DNA MER1_type -28 196 2 327 167 0 30 chr3 18082848 18082914 -199954244 - Alu SINE Alu -6 295 232 2467 61 0 3 chr3 18082939 18083232 -199953926 - AluSq SINE Alu -21 292 1 24 0 0 0 chr3 18083234 18083258 -199953900 + AT_rich Low_complexity Low_complexity 1 24 0 2533 161 117 13 chr3 18083259 18083409 -199953749 - L1PB4 LINE L1 -10 6146 6013 2200 106 0 34 chr3 18083409 18083730 -199953428 - AluY SINE Alu -1 310 1 2533 161 117 13 chr3 18083730 18084120 -199953038 - L1PB4 LINE L1 -143 6013 5550 392 297 57 31 chr3 18084141 18084303 -199952855 - MIR SINE MIR -38 224 55 2179 139 0 0 chr3 18084303 18084606 -199952552 - AluSx SINE Alu -9 303 1 392 297 57 31 chr3 18084606 18084635 -199952523 - MIR SINE MIR -207 55 28 29 0 0 0 chr3 18084723 18084752 -199952406 + AT_rich Low_complexity Low_complexity 1 29 0 809 153 0 0 chr3 18084752 18084870 -199952288 - FLAM_C SINE Alu -25 118 1 2362 97 7 0 chr3 18085157 18085467 -199951691 + AluSx SINE Alu 1 312 0 1577 155 71 76 chr3 18085932 18086221 -199950937 - MLT1A1 LTR MaLR 0 365 77 2321 81 7 3 chr3 18086221 18086519 -199950639 - AluSg SINE Alu -11 299 1 1577 155 71 76 chr3 18086519 18086596 -199950562 - MLT1A1 LTR MaLR -288 77 1 497 172 2 16 chr3 18087015 18087116 -199950042 + L1P5 LINE L1 5697 5791 -360 508 193 37 37 chr3 18087118 18087227 -199949931 + MER7A DNA MER2_type 1 107 -239 21 0 0 0 chr3 18087348 18087369 -199949789 + AT_rich Low_complexity Low_complexity 1 21 0 2553 50 0 17 chr3 18087369 18087670 -199949488 - AluY SINE Alu -15 296 1 722 222 0 0 chr3 18087678 18087804 -199949354 - FLAM_A SINE Alu -7 126 1 1484 163 15 15 chr3 18087804 18088068 -199949090 + MER7A DNA MER2_type 74 337 0 314 167 15 30 chr3 18088086 18088152 -199949006 + Tigger5 DNA MER2_type 2254 2318 -5 2681 151 64 4 chr3 18088157 18088642 -199948516 + L1MA9 LINE L1 5798 6311 -1 2353 168 151 118 chr3 18088797 18088864 -199948294 - L1MB7 LINE L1 -9 6175 6112 2270 112 0 0 chr3 18088864 18089160 -199947998 + AluSx SINE Alu 1 296 -16 2353 168 151 118 chr3 18089160 18089589 -199947569 - L1MB7 LINE L1 -72 6112 5699 1469 142 29 16 chr3 18089589 18089835 -199947323 - AluJo SINE Alu -24 288 40 2353 168 151 118 chr3 18089835 18090292 -199946866 - L1MB7 LINE L1 -485 5699 5178 2035 150 63 11 chr3 18090296 18090662 -199946496 + MSTB1 LTR MaLR 1 385 -47 1072 176 45 9 chr3 18090661 18090882 -199946276 - MSTB1 LTR MaLR -200 232 4 * 698 344 129 24 chr3 18090907 18091783 -199945375 + L2 LINE L2 2060 3035 -237 640 235 150 5 chr3 18091822 18092035 -199945123 + MIR SINE MIR 1 244 -18 2165 123 0 0 chr3 18092805 18093138 -199944020 + AluSx SINE Alu 1 333 0 354 246 113 21 chr3 18093143 18093285 -199943873 + MIR3 SINE MIR 42 196 -12 2059 156 0 3 chr3 18093616 18093924 -199943234 + AluJb SINE Alu 1 307 -5 858 176 93 32 chr3 18095114 18095330 -199941828 + MIR SINE MIR 13 241 -21 511 261 73 0 chr3 18095365 18095530 -199941628 + ERVL LTR ERVL 5150 5326 -438 2212 104 3 16 chr3 18095573 18095881 -199941277 + AluSx SINE Alu 9 312 0 1277 103 0 16 chr3 18096140 18096325 -199940833 - AluSg/x SINE Alu 0 312 131 249 267 86 48 chr3 18096472 18096577 -199940581 + LTR50 LTR ERVL 39 147 -648 2233 97 0 0 chr3 18096672 18096976 -199940182 - AluSc SINE Alu 0 304 1 1708 164 0 14 chr3 18096978 18097271 -199939887 - AluJb SINE Alu -23 289 1 275 167 4 0 chr3 18097413 18097469 -199939689 - FLAM SINE Alu -1 132 84 225 0 0 0 chr3 18097611 18097636 -199939522 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 270 0 0 0 chr3 18097639 18097669 -199939489 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2254 104 0 0 chr3 18097675 18097955 -199939203 - AluSg SINE Alu -30 280 1 1545 138 42 12 chr3 18098004 18098244 -199938914 - AluJo SINE Alu -63 249 3 957 230 127 28 chr3 18098307 18098697 -199938461 - MLT1F1 LTR MaLR -102 447 1 463 221 26 0 chr3 18098822 18098935 -199938223 + LTR33A LTR ERVL 408 523 0 420 293 96 0 chr3 18098998 18099186 -199937972 - MIR SINE MIR -31 231 26 259 311 30 15 chr3 18099375 18099507 -199937651 + MIR3 SINE MIR 11 144 -64 1465 172 42 19 chr3 18099680 18099941 -199937217 - AluJo SINE Alu -45 267 1 2423 102 0 3 chr3 18100006 18100320 -199936838 + AluSq SINE Alu 1 313 0 422 310 76 0 chr3 18100456 18100614 -199936544 - MIR SINE MIR -87 175 6 235 244 61 122 chr3 18100917 18101229 -199935929 + MLT1K LTR MaLR 135 427 -161 370 292 35 0 chr3 18102514 18102627 -199934531 + L2 LINE L2 3150 3266 -6 541 159 138 43 chr3 18103640 18103778 -199933380 + MIR3 SINE MIR 19 169 -39 2493 242 96 25 chr3 18103987 18104144 -199933014 + L1ME3A LINE L1 5053 5197 -973 2179 106 0 3 chr3 18104144 18104437 -199932721 + AluSc SINE Alu 13 304 -5 2493 242 96 25 chr3 18104437 18105297 -199931861 + L1ME3A LINE L1 5197 6145 -25 454 265 26 0 chr3 18105344 18105461 -199931697 - L2 LINE L2 -2 3270 3151 1816 136 49 7 chr3 18105501 18105788 -199931370 - AluJo SINE Alu -11 301 3 212 340 211 12 chr3 18106630 18107057 -199930101 + L2 LINE L2 2349 2860 -454 234 265 15 0 chr3 18107658 18107726 -199929432 - MIR SINE MIR -70 192 124 6060 148 6 12 chr3 18108119 18110025 -199927133 + L1PA13 LINE L1 4247 6163 0 1052 183 5 48 chr3 18110285 18110493 -199926665 + AluJo SINE Alu 1 199 -113 294 295 201 7 chr3 18110643 18110792 -199926366 - MIR SINE MIR -78 184 7 4968 196 25 130 chr3 18110989 18112238 -199924920 + L1M2c LINE L1 2088 3467 -3321 1304 167 0 39 chr3 18112238 18112471 -199924687 + AluJo SINE Alu 87 310 -2 4968 196 25 130 chr3 18112471 18112700 -199924458 + L1M2c LINE L1 3467 3718 -3070 1591 155 54 32 chr3 18112700 18112977 -199924181 - AluJo SINE Alu -29 283 1 4968 196 25 130 chr3 18112977 18113290 -199923868 + L1M2c LINE L1 3718 4062 -2726 1551 204 17 13 chr3 18113290 18113589 -199923569 + AluJb SINE Alu 1 300 -12 4968 196 25 130 chr3 18113589 18114341 -199922817 + L1M2c LINE L1 4062 4570 -2218 2014 138 14 0 chr3 18114343 18114619 -199922539 + AluSx SINE Alu 3 282 -30 779 125 0 59 chr3 18114619 18114745 -199922413 + AluSg/x SINE Alu 167 286 -26 3633 126 41 48 chr3 18114745 18115430 -199921728 + L1PB4 LINE L1 5476 6155 -1 926 174 39 57 chr3 18115624 18115906 -199921252 - L1MC5 LINE L1 -44 7917 7641 1622 117 133 11 chr3 18116220 18116348 -199920810 - AluJb SINE Alu -6 296 185 2122 121 20 3 chr3 18116348 18116653 -199920505 - AluSx SINE Alu -2 310 1 1622 117 133 11 chr3 18116653 18116788 -199920370 - AluJb SINE Alu -117 185 1 877 143 0 15 chr3 18116790 18116923 -199920235 - FLAM_C SINE Alu -2 131 1 263 344 100 28 chr3 18117086 18117193 -199919965 + L2 LINE L2 3075 3202 -70 2579 106 22 6 chr3 18117193 18117551 -199919607 + THE1B LTR MaLR 1 364 0 263 344 100 28 chr3 18117551 18117623 -199919535 + L2 LINE L2 3202 3267 -5 320 299 0 0 chr3 18117648 18117735 -199919423 + L1MD3 LINE L1 5484 5570 -592 2407 217 72 40 chr3 18117742 18118534 -199918624 + HAL1 LINE L1 990 1806 -701 693 281 46 18 chr3 18118591 18118872 -199918286 + HAL1 LINE L1 2150 2438 -69 185 342 95 13 chr3 18119379 18119537 -199917621 + MIR3 SINE MIR 1 171 -37 210 209 23 0 chr3 18119901 18119944 -199917214 + L2 LINE L2 3224 3267 -5 1725 158 24 10 chr3 18120075 18120372 -199916786 - AluJo SINE Alu -11 301 1 205 234 21 0 chr3 18121775 18121822 -199915336 - MIR SINE MIR -129 79 32 22 35 0 0 chr3 18122090 18122119 -199915039 + AT_rich Low_complexity Low_complexity 1 29 0 1260 226 7 36 chr3 18122133 18122439 -199914719 + AluJb SINE Alu 1 297 -15 292 238 98 24 chr3 18123000 18123164 -199913994 + L1MD3 LINE L1 5844 6019 -1976 * 797 182 223 8 chr3 18123032 18123274 -199913884 + L1MB7 LINE L1 5878 6171 -13 2205 109 0 0 chr3 18123278 18123563 -199913595 - AluSx SINE Alu -11 301 17 277 257 31 2 chr3 18123563 18123671 -199913487 + ERVL LTR ERVL 2227 2377 -2658 784 361 15 3 chr3 18123755 18124090 -199913068 + ERVL LTR ERVL 4728 5066 -698 221 315 0 55 chr3 18124361 18124434 -199912724 - L2 LINE L2 -480 2834 2766 530 233 108 124 chr3 18124446 18124599 -199912559 + HAL1 LINE L1 575 724 -1783 2263 128 0 0 chr3 18124599 18124903 -199912255 + AluSx SINE Alu 1 304 -8 530 233 108 124 chr3 18124903 18125007 -199912151 + HAL1 LINE L1 724 828 -1679 927 109 0 8 chr3 18125019 18125147 -199912011 + FLAM_C SINE Alu 2 128 -5 490 154 39 0 chr3 18125176 18125280 -199911878 + (TATG)n Simple_repeat Simple_repeat 1 108 0 228 159 0 0 chr3 18125280 18125324 -199911834 - LTR66 LTR ERVL -172 438 395 234 174 0 0 chr3 18125325 18125371 -199911787 + (CA)n Simple_repeat Simple_repeat 2 47 0 2081 141 0 7 chr3 18126156 18126462 -199910696 + AluSx SINE Alu 1 304 -8 206 261 196 22 chr3 18126514 18126606 -199910552 + MIR3 SINE MIR 11 118 -90 205 340 0 29 chr3 18126674 18126777 -199910381 + MIR SINE MIR 104 203 -59 192 306 100 44 chr3 18126934 18127114 -199910044 - L2 LINE L2 -265 3007 2818 2256 90 10 0 chr3 18127898 18128187 -199908971 - AluSx SINE Alu -20 292 1 466 311 44 22 chr3 18129206 18129389 -199907769 + MIR SINE MIR 75 261 -1 220 329 54 47 chr3 18129841 18129990 -199907168 + L2 LINE L2 2598 2747 -567 1969 143 3 7 chr3 18130067 18130368 -199906790 - AluSx SINE Alu -12 300 1 1575 127 88 60 chr3 18130522 18130806 -199906352 + AluSx SINE Alu 3 294 -18 1290 115 5 30 chr3 18130883 18131083 -199906075 - AluSq SINE Alu 0 313 119 2363 82 23 0 chr3 18131332 18131638 -199905520 - AluSp SINE Alu 0 313 1 458 283 142 32 chr3 18131916 18131972 -199905186 + MIR SINE MIR 20 68 -194 2034 125 14 0 chr3 18131972 18132288 -199904870 - AluSq SINE Alu 0 320 1 458 283 142 32 chr3 18132288 18132449 -199904709 + MIR SINE MIR 68 262 0 2759 200 71 20 chr3 18132513 18132558 -199904600 + L1MB4 LINE L1 4404 4445 -1701 1665 193 0 0 chr3 18132558 18132866 -199904292 + AluJb SINE Alu 8 315 0 2759 200 71 20 chr3 18132866 18133518 -199903640 + L1MB4 LINE L1 4445 5139 -1007 2090 124 0 7 chr3 18134195 18134517 -199902641 + AluSx SINE Alu 1 320 0 1271 145 53 42 chr3 18135082 18135112 -199902046 + L1MB4 LINE L1 5106 5134 -1046 2334 106 0 0 chr3 18135112 18135413 -199901745 + AluSc SINE Alu 1 301 -8 1271 145 53 42 chr3 18135413 18135603 -199901555 + L1MB4 LINE L1 5134 5330 -850 1895 173 0 3 chr3 18135603 18135909 -199901249 + AluSx SINE Alu 1 305 -7 1271 145 53 42 chr3 18135909 18136056 -199901102 + L1MB4 LINE L1 5330 5474 -706 1081 129 0 12 chr3 18136057 18136220 -199900938 + FRAM SINE Alu 1 153 -23 43 35 0 0 chr3 18136220 18136277 -199900881 + AT_rich Low_complexity Low_complexity 1 57 0 3904 157 16 25 chr3 18136277 18136595 -199900563 + L1MB4 LINE L1 5478 5798 -382 2107 98 22 0 chr3 18136595 18136909 -199900249 + AluSx SINE Alu 1 320 0 3904 157 16 25 chr3 18136909 18137298 -199899860 + L1MB4 LINE L1 5798 6179 -1 258 292 0 22 chr3 18137298 18137387 -199899771 + L1MC/D LINE L1 5811 5897 -1911 23 0 0 0 chr3 18137579 18137602 -199899556 + AT_rich Low_complexity Low_complexity 1 23 0 1783 147 4 4 chr3 18137751 18138070 -199899088 - AluJb SINE Alu 0 312 23 211 182 91 0 chr3 18138272 18138316 -199898842 + L2 LINE L2 3221 3268 -4 1110 129 99 0 chr3 18138435 18138606 -199898552 + AluSg/x SINE Alu 116 303 -7 2200 103 10 3 chr3 18138606 18138907 -199898251 + AluY SINE Alu 1 303 -8 284 191 168 53 chr3 18139548 18139679 -199897479 + MIR SINE MIR 75 220 -42 601 339 150 28 chr3 18139690 18140969 -199896189 + L2 LINE L2 1630 3084 -188 25 0 0 0 chr3 18141967 18141992 -199895166 + AT_rich Low_complexity Low_complexity 1 25 0 2295 74 0 3 chr3 18142159 18142469 -199894689 + AluSq SINE Alu 1 309 0 205 244 0 0 chr3 18142575 18142616 -199894542 - MIR SINE MIR -138 70 30 510 276 92 54 chr3 18143820 18144081 -199893077 + L3 LINE CR1 625 895 -682 1944 125 0 49 chr3 18144640 18144968 -199892190 + AluSx SINE Alu 1 312 0 2210 122 46 24 chr3 18144979 18145308 -199891850 + MER1B DNA MER1_type 2 337 0 819 167 21 7 chr3 18145389 18145533 -199891625 + FRAM SINE Alu 1 146 -30 1742 183 0 31 chr3 18145806 18145941 -199891217 + AluJo SINE Alu 1 139 -173 1959 132 38 0 chr3 18145941 18146228 -199890930 + AluSq SINE Alu 1 298 -15 1742 183 0 31 chr3 18146228 18146414 -199890744 + AluJo SINE Alu 139 312 0 274 98 24 0 chr3 18146417 18146458 -199890700 + LTR56 LTR ERV1 347 388 -57 37322 90 7 8 chr3 18146516 18151648 -199885510 + L1P LINE L1 11 5138 -1008 228 97 0 0 chr3 18151750 18151781 -199885377 - Alu SINE Alu -269 32 2 2255 112 3 3 chr3 18151826 18152129 -199885029 + AluSq SINE Alu 1 303 -10 1270 295 57 45 chr3 18152480 18152559 -199884599 - LTR67 LTR ERVL -7 550 473 2062 132 7 0 chr3 18152559 18152855 -199884303 + AluSx SINE Alu 1 298 -14 1270 295 57 45 chr3 18152855 18153284 -199883874 - LTR67 LTR ERVL -84 473 36 1896 138 13 30 chr3 18153296 18153601 -199883557 + AluJo SINE Alu 2 301 -11 2099 220 36 13 chr3 18153614 18154083 -199883075 + L1MD2 LINE L1 5669 6148 -211 3105 162 147 5 chr3 18154153 18154726 -199882432 + MER44D DNA MER2_type 71 596 -9 974 164 61 119 chr3 18154728 18154951 -199882207 + MLT1A1 LTR MaLR 46 250 -115 2426 80 7 0 chr3 18154951 18155252 -199881906 - AluSg SINE Alu -7 303 1 974 164 61 119 chr3 18155252 18155321 -199881837 + MLT1A1 LTR MaLR 250 321 -44 317 137 20 0 chr3 18155326 18155377 -199881781 + Alu SINE Alu 1 52 -250 234 196 0 0 chr3 18155477 18155523 -199881635 - L1MC4 LINE L1 -1339 6703 6658 252 0 0 0 chr3 18155523 18155551 -199881607 + (CA)n Simple_repeat Simple_repeat 2 29 0 947 205 0 0 chr3 18155551 18155712 -199881446 + AluJo SINE Alu 125 285 -27 574 239 49 74 chr3 18155760 18156212 -199880946 + HAL1 LINE L1 853 1347 -1160 1737 177 13 10 chr3 18156212 18156522 -199880636 + AluJb SINE Alu 1 311 -1 574 239 49 74 chr3 18156522 18156557 -199880601 + HAL1 LINE L1 1347 1381 -1126 2048 239 75 76 chr3 18156574 18157505 -199879653 + HAL1 LINE L1 1561 2490 -17 1802 145 3 39 chr3 18158013 18158323 -199878835 + AluJb SINE Alu 1 299 -13 627 153 127 0 chr3 18159785 18159903 -199877255 + MER94 DNA DNA 1 133 -1 2465 63 0 7 chr3 18160146 18160445 -199876713 + AluY SINE Alu 1 297 -14 299 321 0 0 chr3 18160615 18160699 -199876459 + L1ME LINE L1 5491 5574 -547 454 310 44 0 chr3 18160778 18160936 -199876222 - MIR SINE MIR -10 252 88 277 270 93 2 chr3 18160936 18161053 -199876105 + L1ME LINE L1 5660 5786 -376 809 153 0 0 chr3 18161144 18161262 -199875896 + FLAM_C SINE Alu 1 118 -25 375 266 97 0 chr3 18161393 18161506 -199875652 - MIR SINE MIR -52 210 87 285 287 37 37 chr3 18162003 18162111 -199875047 + L2 LINE L2 3161 3268 -4 255 265 133 0 chr3 18162539 18162637 -199874521 + MIR SINE MIR 85 195 -67 3204 115 36 6 chr3 18162640 18163110 -199874048 - MER1A DNA MER1_type 0 529 46 240 242 48 16 chr3 18163298 18163360 -199873798 - L2 LINE L2 -5 3267 3204 1896 144 107 3 chr3 18163361 18163688 -199873470 + MER46B DNA MER2_type 1 236 0 727 220 10 25 chr3 18163815 18164015 -199873143 - L1MB8 LINE L1 -2 6176 5980 201 300 43 29 chr3 18164035 18164105 -199873053 - L2 LINE L2 -2 3270 3200 3407 156 46 50 chr3 18164112 18164785 -199872373 - L1MB8 LINE L1 -206 5972 5297 2363 99 0 3 chr3 18164785 18165087 -199872071 - AluSx SINE Alu -11 301 1 3407 156 46 50 chr3 18165087 18165176 -199871982 - L1MB8 LINE L1 -881 5297 5209 1159 125 0 28 chr3 18165184 18165360 -199871798 - AluSg/x SINE Alu -5 305 135 2105 128 3 3 chr3 18165360 18165658 -199871500 - AluSx SINE Alu -14 298 1 375 191 0 0 chr3 18165663 18165731 -199871427 - L1M4 LINE L1 -854 5292 5225 1239 123 0 0 chr3 18165731 18165902 -199871256 - AluSx SINE Alu -21 289 119 606 127 0 0 chr3 18165902 18165981 -199871177 - AluSc SINE Alu -21 288 210 1112 118 0 0 chr3 18165981 18166125 -199871033 - AluSq/x SINE Alu -168 144 1 415 257 121 83 chr3 18166214 18166553 -199870605 - L2 LINE L2 -4 3309 2958 617 234 6 35 chr3 18166591 18166762 -199870396 + MIR SINE MIR 6 171 -91 605 82 21 41 chr3 18167320 18167417 -199869741 - FRAM SINE Alu -13 163 69 226 280 13 27 chr3 18167575 18167650 -199869508 + L1MC/D LINE L1 5681 5754 -2054 231 200 139 127 chr3 18167724 18167783 -199869375 - MIR SINE MIR 0 262 205 1909 143 17 0 chr3 18167783 18168084 -199869074 + AluJo SINE Alu 1 306 -6 231 200 139 127 chr3 18168084 18168189 -199868969 - MIR SINE MIR -57 205 96 660 241 47 31 chr3 18168258 18168449 -199868709 + MIR SINE MIR 48 241 -21 197 229 24 72 chr3 18168474 18168557 -199868601 + L2 LINE L2 2871 2949 -323 2030 132 19 16 chr3 18168823 18169134 -199868024 - AluSx SINE Alu 0 312 1 189 147 0 0 chr3 18169152 18169186 -199867972 + (A)n Simple_repeat Simple_repeat 1 34 0 29 0 0 0 chr3 18169201 18169230 -199867928 + AT_rich Low_complexity Low_complexity 1 29 0 789 152 9 119 chr3 18170620 18170700 -199866458 + L1MC4 LINE L1 7856 7943 -99 942 180 37 37 chr3 18170700 18170889 -199866269 + MER5A DNA MER1_type 1 189 0 789 152 9 119 chr3 18170889 18171018 -199866140 + L1MC4 LINE L1 7943 8042 0 24 0 0 0 chr3 18171691 18171715 -199865443 + AT_rich Low_complexity Low_complexity 1 24 0 271 267 111 11 chr3 18171879 18171969 -199865189 + MIR SINE MIR 7 105 -157 1404 168 53 76 chr3 18172123 18172427 -199864731 + AluJb SINE Alu 1 297 -15 424 278 117 0 chr3 18172479 18172631 -199864527 + MIR SINE MIR 38 214 -48 704 264 86 0 chr3 18172688 18172862 -199864296 - MER5A DNA MER1_type 0 189 1 270 250 156 0 chr3 18172867 18172931 -199864227 - L1ME LINE L1 -552 5612 5539 908 246 57 36 chr3 18173739 18174073 -199863085 - MER2 DNA MER2_type -1 343 3 271 315 62 15 chr3 18174106 18174236 -199862922 - MIR SINE MIR -56 152 17 198 214 0 24 chr3 18175271 18175313 -199861845 - MIR SINE MIR -136 72 32 603 100 45 27 chr3 18175379 18175489 -199861669 + L1MB8 LINE L1 6067 6178 0 1794 169 23 10 chr3 18175491 18175792 -199861366 + AluJb SINE Alu 1 305 -7 2139 104 3 7 chr3 18176231 18176518 -199860640 - AluSx SINE Alu -26 286 1 181 250 0 0 chr3 18177287 18177327 -199859831 - L2 LINE L2 -11 3261 3222 264 300 50 17 chr3 18177331 18177451 -199859707 - MIR SINE MIR -89 173 50 2015 131 20 23 chr3 18177515 18177821 -199859337 - AluSx SINE Alu -7 305 1 309 356 52 30 chr3 18177850 18177985 -199859173 - MIR3 SINE MIR -61 147 10 2230 117 0 0 chr3 18177994 18178294 -199858864 - AluSx SINE Alu -12 300 1 475 214 58 0 chr3 18178483 18178586 -199858572 - L1ME3 LINE L1 -1 6161 6053 2416 209 82 43 chr3 18179458 18179742 -199857416 - MER21B LTR ERV1 -60 803 532 1960 140 0 13 chr3 18179742 18180049 -199857109 - AluSx SINE Alu -9 303 1 2416 209 82 43 chr3 18180049 18180443 -199856715 - MER21B LTR ERV1 -331 532 98 2197 180 39 142 chr3 18181082 18181768 -199855390 + LTR8A LTR ERV1 34 633 -94 2167 120 0 7 chr3 18181768 18182067 -199855091 - AluSx SINE Alu -15 297 1 2197 180 39 142 chr3 18182067 18182154 -199855004 + LTR8A LTR ERV1 633 727 0 260 200 123 0 chr3 18182220 18182285 -199854873 + MER5C DNA MER1_type 247 319 -5 * 351 285 62 42 chr3 18182283 18182427 -199854731 - MIR3 SINE MIR -41 167 21 2170 145 0 0 chr3 18182606 18182910 -199854248 - AluJb SINE Alu -6 306 3 381 246 167 9 chr3 18183327 18183441 -199853717 + MIR SINE MIR 16 147 -61 312 229 12 24 chr3 18183494 18183577 -199853581 - MER117 DNA MER1_type -55 142 61 311 209 3 171 chr3 18183589 18183652 -199853506 + MER5A DNA MER1_type 10 82 -96 2229 66 7 24 chr3 18183652 18183941 -199853217 + AluSq SINE Alu 17 300 -13 311 209 3 171 chr3 18183941 18183955 -199853203 + MER5A DNA MER1_type 82 97 -81 1840 151 45 3 chr3 18183955 18184246 -199852912 + AluJb SINE Alu 5 307 -5 311 209 3 171 chr3 18184246 18184312 -199852846 + MER5A DNA MER1_type 97 116 -62 751 207 17 35 chr3 18184779 18184953 -199852205 + MER5A DNA MER1_type 18 188 -1 2131 81 74 0 chr3 18184983 18185266 -199851892 + AluSq SINE Alu 1 304 -9 682 223 101 45 chr3 18185916 18186163 -199850995 - MIR SINE MIR 0 262 2 785 193 0 30 chr3 18187558 18187724 -199849434 + MER5B DNA MER1_type 3 163 -15 491 244 35 0 chr3 18188677 18188792 -199848366 - L1MB5 LINE L1 0 6174 6056 290 295 74 8 chr3 18189297 18189419 -199847739 - MIR SINE MIR -61 147 18 533 256 46 72 chr3 18189930 18189992 -199847166 - MIR SINE MIR 0 262 200 1571 118 184 8 chr3 18189992 18190247 -199846911 - AluSg1 SINE Alu -7 302 3 533 256 46 72 chr3 18190247 18190446 -199846712 - MIR SINE MIR -62 200 8 334 257 97 38 chr3 18190863 18191100 -199846058 - L1ME4a LINE L1 -104 6017 5767 200 61 61 0 chr3 18191132 18191165 -199845993 + CT-rich Low_complexity Low_complexity 2 36 0 2227 92 0 3 chr3 18191167 18191459 -199845699 - AluSx SINE Alu -3 309 19 642 267 143 5 chr3 18191466 18191676 -199845482 - L1ME4a LINE L1 -2037 5771 5533 263 28 28 0 chr3 18192487 18192523 -199844635 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 2080 147 3 6 chr3 18192526 18192839 -199844319 - AluJb SINE Alu 0 312 1 794 241 30 5 chr3 18192890 18193093 -199844065 + MIR SINE MIR 43 250 -12 327 348 43 7 chr3 18193188 18193329 -199843829 - MIR SINE MIR -50 212 67 216 315 55 14 chr3 18193579 18193652 -199843506 + L2 LINE L2 3159 3234 -38 248 313 15 0 chr3 18193792 18193859 -199843299 - L2 LINE L2 -219 3053 2986 572 264 74 0 chr3 18194047 18194210 -199842948 + MIR SINE MIR 21 195 -67 564 246 15 0 chr3 18194482 18194616 -199842542 + MER103 DNA DNA 11 146 -20 2499 108 113 17 chr3 18195027 18195436 -199841722 + MER83 LTR ERV1 1 448 0 6897 133 12 22 chr3 18195445 18195577 -199841581 - LTR49-int LTR ERV1 -1033 5298 5166 1589 179 20 13 chr3 18195577 18195878 -199841280 - AluJo SINE Alu -9 303 1 6897 133 12 22 chr3 18195878 18196762 -199840396 - LTR49-int LTR ERV1 -1165 5166 4292 2015 125 50 0 chr3 18196762 18197059 -199840099 - AluSx SINE Alu 0 312 1 6897 133 12 22 chr3 18197059 18197192 -199839966 - LTR49-int LTR ERV1 -2039 4292 4159 1259 238 143 46 chr3 18197259 18197671 -199839487 + MER21B LTR ERV1 330 781 -82 3277 214 32 61 chr3 18197764 18198210 -199838948 - L1ME1 LINE L1 -25 6421 5964 1946 105 27 90 chr3 18198210 18198543 -199838615 - AluSx SINE Alu 0 312 1 2304 107 10 0 chr3 18198549 18198849 -199838309 - AluSg SINE Alu -7 303 1 3277 214 32 61 chr3 18198849 18199924 -199837234 - L1ME1 LINE L1 -487 5959 4931 757 189 0 0 chr3 18199950 18200082 -199837076 - FRAM SINE Alu -5 171 40 538 229 6 45 chr3 18200106 18200285 -199836873 - L1ME1 LINE L1 -1499 4927 4756 * 542 227 13 47 chr3 18200272 18200422 -199836736 - L1ME1 LINE L1 -4813 1613 1469 276 183 9 104 chr3 18200429 18200544 -199836614 - L1ME1 LINE L1 -5069 1357 1254 369 62 0 0 chr3 18200572 18200620 -199836538 + (CA)n Simple_repeat Simple_repeat 1 48 0 30 69 0 0 chr3 18200659 18200717 -199836441 + AT_rich Low_complexity Low_complexity 1 58 0 419 221 88 51 chr3 18200721 18200898 -199836260 + L1ME1 LINE L1 5907 6161 -5 1651 124 0 70 chr3 18200940 18201213 -199835945 + AluSx SINE Alu 1 254 -58 365 103 5 23 chr3 18202560 18202773 -199834385 + AluSx SINE Alu 1 293 -8 202 234 0 0 chr3 18203203 18203250 -199833908 + T-rich Low_complexity Low_complexity 1 47 0 7344 47 8 0 chr3 18203516 18204978 -199832180 - L1PA6 LINE L1 -1 6153 4689 1161 124 96 0 chr3 18205174 18205352 -199831806 + AluSg/x SINE Alu 118 312 0 2021 122 10 3 chr3 18205356 18205652 -199831506 + AluY SINE Alu 1 298 -13 246 191 168 53 chr3 18206292 18206423 -199830735 + MIR SINE MIR 75 220 -42 285 342 151 25 chr3 18206434 18207696 -199829462 + L2 LINE L2 1630 3069 -203 25 0 0 0 chr3 18208713 18208738 -199828420 + AT_rich Low_complexity Low_complexity 1 25 0 373 132 0 5 chr3 18208903 18208963 -199828195 + Alu SINE Alu 2 52 -247 1979 122 0 49 chr3 18209425 18209753 -199827405 + AluSx SINE Alu 1 312 0 2069 125 46 24 chr3 18209764 18210093 -199827065 + MER1B DNA MER1_type 2 337 0 782 160 21 7 chr3 18210174 18210318 -199826840 + FRAM SINE Alu 1 146 -30 1748 183 0 31 chr3 18210591 18210726 -199826432 + AluJo SINE Alu 1 139 -173 1955 136 38 0 chr3 18210726 18211013 -199826145 + AluSq SINE Alu 1 298 -15 1748 183 0 31 chr3 18211013 18211199 -199825959 + AluJo SINE Alu 139 312 0 275 98 24 0 chr3 18211202 18211243 -199825915 + LTR56 LTR ERV1 347 388 -57 33153 93 7 8 chr3 18211301 18215906 -199821252 + L1P LINE L1 11 4612 -1534 17783 67 5 12 chr3 18216028 18218419 -199818739 + L1P3 LINE L1 1504 3868 -2593 995 208 12 8 chr3 18218533 18218774 -199818384 - L1MC1 LINE L1 -103 6230 5989 961 265 23 10 chr3 18218797 18219099 -199818059 - L1MD3 LINE L1 -18 7977 7672 1285 193 98 28 chr3 18221102 18221387 -199815771 + AluJo SINE Alu 1 305 -7 203 335 30 0 chr3 18222825 18222989 -199814169 + (CA)n Simple_repeat Simple_repeat 1 169 0 1003 201 54 0 chr3 18223172 18223376 -199813782 - MER58A DNA MER1_type 0 224 10 2646 222 30 39 chr3 18223421 18224123 -199813035 - L1MB7 LINE L1 0 6184 5489 531 234 0 14 chr3 18224764 18224905 -199812253 - MIR SINE MIR -115 147 9 187 294 111 33 chr3 18225082 18225235 -199811923 + L2 LINE L2 2898 3062 -210 511 221 0 0 chr3 18229274 18229387 -199807771 - L1MA7 LINE L1 -6 6285 6173 825 240 39 27 chr3 18229387 18229645 -199807513 + L1MA7 LINE L1 5895 6155 -136 218 292 0 45 chr3 18231432 18231521 -199805637 - MIR SINE MIR -113 149 65 253 242 15 0 chr3 18231648 18231714 -199805444 + L2 LINE L2 3205 3271 -1 1912 91 0 4 chr3 18232503 18232745 -199804413 + AluSx SINE Alu 58 298 -14 7443 127 48 31 chr3 18232745 18235014 -199802144 + L1MA3 LINE L1 3782 6077 -228 2240 121 3 0 chr3 18235014 18235311 -199801847 - AluSx SINE Alu -14 298 1 7443 127 48 31 chr3 18235311 18235518 -199801640 + L1MA3 LINE L1 6077 6279 -26 2182 125 0 3 chr3 18235518 18235821 -199801337 - AluSx SINE Alu -5 307 6 2268 93 0 59 chr3 18235990 18236314 -199800844 - AluY SINE Alu -5 306 2 574 260 41 7 chr3 18237391 18237537 -199799621 - MIR SINE MIR -108 154 4 13581 56 4 12 chr3 18237616 18240251 -199796907 - L1PA5 LINE L1 -2 6152 3532 19702 74 4 23 chr3 18240251 18243121 -199794037 + L1PA5 LINE L1 737 3553 -2593 1045 203 12 8 chr3 18243235 18243476 -199793682 - L1MC1 LINE L1 -103 6230 5989 970 265 23 10 chr3 18243499 18243801 -199793357 - L1MD3 LINE L1 -18 7977 7672 1380 190 99 25 chr3 18245804 18246088 -199791070 + AluJo SINE Alu 1 305 -7 203 335 30 0 chr3 18247526 18247690 -199789468 + (CA)n Simple_repeat Simple_repeat 1 169 0 974 201 54 0 chr3 18247974 18248178 -199788980 - MER58A DNA MER1_type 0 224 10 2620 222 30 39 chr3 18248223 18248925 -199788233 - L1MB7 LINE L1 0 6184 5489 590 227 0 14 chr3 18249566 18249707 -199787451 - MIR SINE MIR -115 147 9 511 221 0 0 chr3 18252290 18252403 -199784755 - L1MA7 LINE L1 -6 6285 6173 825 240 39 27 chr3 18252403 18252661 -199784497 + L1MA7 LINE L1 5895 6155 -136 218 292 0 45 chr3 18254449 18254538 -199782620 - MIR SINE MIR -113 149 65 241 231 31 0 chr3 18254665 18254730 -199782428 + L2 LINE L2 3205 3271 -1 541 204 0 0 chr3 18257411 18257524 -199779634 - L1MA7 LINE L1 -6 6285 6173 756 251 35 27 chr3 18257524 18257783 -199779375 + L1MA7 LINE L1 5895 6155 -136 226 282 0 47 chr3 18258606 18258691 -199778467 - MIR SINE MIR -117 145 65 748 303 138 23 chr3 18260322 18261044 -199776114 - L2 LINE L2 0 3313 2503 2012 143 78 104 chr3 18261214 18261725 -199775433 + LTR8A LTR ERV1 230 727 0 5501 53 33 116 chr3 18261747 18262647 -199774511 + LTR12 LTR ERV1 1 826 0 398 264 107 6 chr3 18263418 18263596 -199773562 + L1MC4a LINE L1 5706 5901 -1907 2397 105 3 0 chr3 18263633 18263937 -199773221 - AluSp SINE Alu -8 305 1 3956 236 49 24 chr3 18264073 18264854 -199772304 - L1MCb LINE L1 -4851 1194 580 2192 107 21 0 chr3 18264854 18265145 -199772013 - AluY SINE Alu -12 299 3 3956 236 49 24 chr3 18265145 18265735 -199771423 - L1MCb LINE L1 -5465 580 7 814 233 8 25 chr3 18265759 18265999 -199771159 - L1M4 LINE L1 -1676 4470 4235 1955 150 27 0 chr3 18266013 18266307 -199770851 - AluJo SINE Alu -2 310 9 389 183 39 12 chr3 18266333 18266419 -199770739 + AluS SINE Alu 1 74 -228 457 160 13 0 chr3 18266534 18266609 -199770549 - AluJ/FLAM SINE Alu -234 78 3 1245 216 61 42 chr3 18266616 18266643 -199770515 - L1M4 LINE L1 -1907 4239 4214 1625 183 63 3 chr3 18266643 18266927 -199770231 + AluJo SINE Alu 1 301 -11 1245 216 61 42 chr3 18266927 18267260 -199769898 - L1M4 LINE L1 -1932 4214 3872 751 240 34 2 chr3 18267247 18267479 -199769679 - L1PBa LINE L1 -4216 2325 1849 * 321 284 11 11 chr3 18267849 18267944 -199769214 - MLT1K LTR MaLR -337 251 157 450 320 102 15 chr3 18268141 18268497 -199768661 + MLT1J2 LTR MaLR 20 409 0 666 225 67 11 chr3 18268503 18268681 -199768477 + MER5A DNA MER1_type 1 188 -1 290 74 0 19 chr3 18269437 18269491 -199767667 - L1MB4 LINE L1 0 6180 6128 24 22 0 43 chr3 18269491 18269507 -199767651 + AT_rich Low_complexity Low_complexity 1 16 -28 1377 146 163 0 chr3 18269507 18269753 -199767405 + AluJo SINE Alu 2 287 -15 24 22 0 43 chr3 18269753 18269782 -199767376 + AT_rich Low_complexity Low_complexity 16 44 0 816 250 62 5 chr3 18269823 18270031 -199767127 - AluJo SINE Alu -92 220 1 3271 148 17 9 chr3 18270031 18270687 -199766471 - L1MB3 LINE L1 -41 6142 5397 1476 207 16 0 chr3 18270689 18271118 -199766040 - L1MB3 LINE L1 -1085 5061 4560 240 250 6 68 chr3 18271363 18271514 -199765644 + GA-rich Low_complexity Low_complexity 2 142 -24 2012 136 79 20 chr3 18271514 18271919 -199765239 - MSTB1 LTR MaLR -3 429 1 240 250 6 68 chr3 18271919 18271943 -199765215 + GA-rich Low_complexity Low_complexity 142 166 0 1163 266 40 31 chr3 18272067 18272645 -199764513 - HERV16 LTR ERVL -3027 1969 1369 2123 143 0 0 chr3 18272645 18272939 -199764219 - AluSx SINE Alu -18 294 1 1163 266 40 31 chr3 18272939 18273119 -199764039 - HERV16 LTR ERVL -3627 1369 1192 743 201 31 122 chr3 18273119 18273373 -199763785 + MLT2B1 LTR ERVL 290 520 0 2071 255 112 36 chr3 18273376 18273814 -199763344 - HERV16 LTR ERVL -3829 1167 764 2293 104 16 0 chr3 18273814 18274122 -199763036 - AluSq SINE Alu 0 313 1 2071 255 112 36 chr3 18274122 18274503 -199762655 - HERV16 LTR ERVL -4232 764 280 1303 187 149 31 chr3 18274503 18274920 -199762238 + MLT1C LTR MaLR 1 466 -1 2071 255 112 36 chr3 18274920 18274937 -199762221 - HERV16 LTR ERVL -4716 280 266 2293 106 0 0 chr3 18274938 18275230 -199761928 - AluSg SINE Alu -18 292 1 316 261 92 92 chr3 18275273 18275439 -199761719 - MIR SINE MIR -28 234 66 1942 165 0 10 chr3 18275439 18275742 -199761416 + AluJb SINE Alu 12 311 -1 316 261 92 92 chr3 18275742 18275782 -199761376 - MIR SINE MIR -195 67 28 6196 42 5 0 chr3 18275798 18276541 -199760617 + L1PA4 LINE L1 5406 6152 -3 267 103 0 0 chr3 18276567 18276606 -199760552 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 356 297 94 0 chr3 18276999 18277127 -199760031 - L1ME4a LINE L1 -21 6100 5961 23 33 0 0 chr3 18277149 18277179 -199759979 + AT_rich Low_complexity Low_complexity 1 30 0 307 143 95 24 chr3 18277260 18277344 -199759814 - L1ME4a LINE L1 -1 6120 6031 2224 163 70 2 chr3 18277355 18277754 -199759404 - MSTB LTR MaLR 0 426 1 25 51 0 0 chr3 18277792 18277831 -199759327 + AT_rich Low_complexity Low_complexity 1 39 0 1921 144 7 7 chr3 18277833 18278132 -199759026 - AluJb SINE Alu -13 299 1 253 331 31 39 chr3 18278168 18278298 -199758860 + MIR SINE MIR 28 156 -106 180 374 22 0 chr3 18278277 18278368 -199758790 + L2 LINE L2 3168 3260 -12 * 2063 136 0 34 chr3 18278465 18278644 -199758514 - AluJb SINE Alu 0 312 147 2081 142 3 0 chr3 18278644 18278947 -199758211 - AluSx SINE Alu -8 304 1 2063 136 0 34 chr3 18278947 18279090 -199758068 - AluJb SINE Alu -165 147 1 394 197 0 0 chr3 18279218 18279289 -199757869 - MER5A DNA MER1_type -117 72 2 215 254 197 28 chr3 18280149 18280291 -199756867 - MIR SINE MIR -14 248 83 1652 143 0 22 chr3 18280346 18280619 -199756539 - AluJo SINE Alu -3 309 43 310 238 115 16 chr3 18280820 18280942 -199756216 + MIR SINE MIR 74 207 -55 1763 174 13 25 chr3 18281035 18281351 -199755807 - AluJb SINE Alu 0 312 1 408 254 73 55 chr3 18281562 18281727 -199755431 - MIR SINE MIR -55 207 40 1025 170 111 73 chr3 18281915 18282203 -199754955 - L1ME1 LINE L1 -3 6163 5865 2430 76 7 3 chr3 18282576 18282878 -199754280 + AluSp SINE Alu 1 303 -10 313 210 0 0 chr3 18283126 18283188 -199753970 + MER91B DNA MER1_type 2 63 -127 820 302 86 29 chr3 18283334 18284102 -199753056 - L2 LINE L2 -219 3053 2252 222 319 14 0 chr3 18284346 18284418 -199752740 + L2 LINE L2 3191 3263 -9 258 286 41 51 chr3 18284448 18284546 -199752612 - MARNA DNA Mariner -14 572 476 422 339 59 4 chr3 18284606 18284860 -199752298 + L1ME LINE L1 5122 5389 -757 2038 146 0 0 chr3 18284874 18285168 -199751990 + AluSx SINE Alu 5 298 -14 1584 166 42 7 chr3 18285280 18285563 -199751595 - AluJb SINE Alu -19 293 1 475 238 20 14 chr3 18285577 18285724 -199751434 + L1ME LINE L1 5593 5740 -381 424 268 109 46 chr3 18285891 18286130 -199751028 + MARNA DNA Mariner 135 388 -198 491 257 59 0 chr3 18288378 18288514 -199748644 - MER63C DNA MER1_type -600 330 187 2272 113 6 3 chr3 18288514 18288825 -199748333 - AluSp SINE Alu -1 312 1 5589 125 4 2 chr3 18288831 18289654 -199747504 - L1PA15 LINE L1 0 6165 5342 424 306 63 27 chr3 18289654 18289876 -199747282 + MIR SINE MIR 21 250 -12 269 253 149 40 chr3 18290191 18290365 -199746793 + MER117 DNA MER1_type 1 193 -4 692 181 88 76 chr3 18290378 18290487 -199746671 + MER5C DNA MER1_type 2 108 -216 7570 29 0 0 chr3 18290487 18291613 -199745545 - L1PA5 LINE L1 -4 6150 5020 692 181 88 76 chr3 18291613 18291752 -199745406 + MER5C DNA MER1_type 108 253 -71 180 0 0 0 chr3 18292745 18292765 -199744393 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 332 344 7 19 chr3 18292877 18293031 -199744127 - MIR3 SINE MIR -24 184 33 278 219 55 0 chr3 18293602 18293675 -199743483 + MLT1L LTR MaLR 1 77 -538 245 246 14 14 chr3 18293790 18293859 -199743299 + MLT1J LTR MaLR 229 297 -214 2235 250 114 27 chr3 18294113 18295036 -199742122 + L1ME3A LINE L1 4146 4987 -1183 1073 172 22 44 chr3 18295036 18295263 -199741895 + L1MB8 LINE L1 5957 6178 0 2235 250 114 27 chr3 18295263 18295984 -199741174 + L1ME3A LINE L1 4987 5945 -225 807 159 22 7 chr3 18296018 18296156 -199741002 + FRAM SINE Alu 13 152 -24 659 203 68 21 chr3 18296161 18296353 -199740805 + L1ME3A LINE L1 5965 6165 -5 953 261 17 0 chr3 18296371 18296609 -199740549 + MIR SINE MIR 21 262 0 2249 127 3 0 chr3 18296759 18297075 -199740083 - 7SLRNA srpRNA srpRNA -3 317 1 427 251 89 45 chr3 18298178 18298357 -199738801 + MIR SINE MIR 49 235 -27 2178 84 22 0 chr3 18298903 18299201 -199737957 - AluSc SINE Alu 0 304 1 565 211 113 0 chr3 18299387 18299529 -199737629 + MER5B DNA MER1_type 1 158 -20 393 228 0 0 chr3 18299579 18299671 -199737487 + MER5A DNA MER1_type 15 106 -83 181 267 0 0 chr3 18299724 18299769 -199737389 + MIR SINE MIR 117 161 -101 * 340 249 28 57 chr3 18299760 18299937 -199737221 + MER5A DNA MER1_type 18 189 0 406 284 157 0 chr3 18300067 18300201 -199736957 - MIR SINE MIR -95 167 13 586 262 36 86 chr3 18300318 18300654 -199736504 - L2 LINE L2 -5 3267 2949 2240 140 85 18 chr3 18300868 18301269 -199735889 + MSTA LTR MaLR 1 428 0 213 132 0 0 chr3 18301418 18301456 -199735702 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 255 264 0 55 chr3 18301622 18301713 -199735445 - MLT1I LTR MaLR -1 408 323 2411 158 29 7 chr3 18301737 18302193 -199734965 - L1MB7 LINE L1 -10 6174 5709 433 261 82 39 chr3 18302313 18302520 -199734638 - MLT1J2 LTR MaLR -215 235 20 1809 167 3 7 chr3 18302790 18303095 -199734063 + AluJb SINE Alu 1 304 -8 21 57 0 0 chr3 18303279 18303314 -199733844 + AT_rich Low_complexity Low_complexity 1 35 0 765 193 0 0 chr3 18303315 18303434 -199733724 - FLAM_A SINE Alu -14 119 1 679 269 148 40 chr3 18303474 18303853 -199733305 + MLT1J LTR MaLR 14 433 -78 183 341 24 12 chr3 18304098 18304183 -199732975 + MIR SINE MIR 12 97 -165 669 182 97 0 chr3 18304242 18304407 -199732751 - MIR SINE MIR -31 231 51 335 374 26 5 chr3 18304671 18304866 -199732292 - MIR SINE MIR -17 245 47 221 291 87 0 chr3 18305175 18305278 -199731880 + MIR SINE MIR 36 147 -61 753 193 6 88 chr3 18305402 18305583 -199731575 + FRAM SINE Alu 1 158 -18 1683 189 10 7 chr3 18305607 18305908 -199731250 + AluJo SINE Alu 5 306 -6 541 240 194 34 chr3 18306000 18306325 -199730833 + MLT1J LTR MaLR 110 486 -25 180 0 0 0 chr3 18307402 18307422 -199729736 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 2047 108 17 7 chr3 18307422 18307705 -199729453 - AluJb SINE Alu -26 286 1 1174 170 67 13 chr3 18308012 18308236 -199728922 - MER46A DNA MER2_type 0 236 1 336 294 16 8 chr3 18308382 18308508 -199728650 - L1ME LINE L1 -302 5819 5693 489 278 182 12 chr3 18308539 18308837 -199728321 - MLT1L LTR MaLR -19 544 142 2219 91 3 41 chr3 18308859 18309177 -199727981 - AluSx SINE Alu -6 306 1 244 359 119 6 chr3 18309584 18309743 -199727415 + MIR SINE MIR 34 210 -52 1904 165 6 19 chr3 18309812 18310128 -199727030 - AluJo SINE Alu 0 312 1 390 293 99 31 chr3 18310181 18310372 -199726786 + MER63A DNA MER1_type 3 206 -4 925 291 53 18 chr3 18310417 18310585 -199726573 - MLT1K LTR MaLR -72 516 355 2067 127 0 29 chr3 18310585 18310901 -199726257 - AluSx SINE Alu -5 307 1 925 291 53 18 chr3 18310901 18311148 -199726010 - MLT1K LTR MaLR -233 355 36 2671 176 52 2 chr3 18311148 18311603 -199725555 + MLT2B1 LTR ERVL 1 484 -36 491 31 15 0 chr3 18311603 18311668 -199725490 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 2671 176 52 2 chr3 18311668 18311707 -199725451 + MLT2B1 LTR ERVL 484 520 0 305 317 150 6 chr3 18312099 18312266 -199724892 - MIR SINE MIR -16 246 56 2056 145 57 8 chr3 18312493 18312560 -199724598 + MLT1B LTR MaLR 1 63 -327 2498 74 0 0 chr3 18312560 18312857 -199724301 + AluSg SINE Alu 12 308 -2 2056 145 57 8 chr3 18312857 18313161 -199723997 + MLT1B LTR MaLR 63 390 0 862 115 0 43 chr3 18313199 18313338 -199723820 - FLAM_C SINE Alu 0 133 1 1188 200 0 0 chr3 18313358 18313597 -199723561 + AluJb SINE Alu 73 311 0 230 254 18 0 chr3 18313779 18313834 -199723324 - L1MC/D LINE L1 -1901 5907 5852 671 300 6 0 chr3 18314235 18314415 -199722743 - MIR3 SINE MIR -9 199 19 635 258 26 0 chr3 18314508 18314663 -199722495 + MIR SINE MIR 19 177 -85 298 281 9 88 chr3 18314678 18314792 -199722366 - MER91C DNA MER1_type -35 105 1 185 121 0 0 chr3 18314834 18314867 -199722291 + MIR SINE MIR 229 261 -1 400 246 113 0 chr3 18314967 18315109 -199722049 - L1ME4a LINE L1 -3 6118 5961 1549 128 120 8 chr3 18315166 18315424 -199721734 + AluJo SINE Alu 1 287 -25 865 263 38 0 chr3 18315466 18315679 -199721479 + MIR SINE MIR 8 228 -34 269 351 29 11 chr3 18315703 18315877 -199721281 - L1ME4a LINE L1 -2012 5796 5620 1571 213 32 52 chr3 18316090 18316532 -199720626 + MER113 DNA MER1_type? 1 433 -88 740 266 5 37 chr3 18316697 18316915 -199720243 - MIR SINE MIR -51 211 1 365 190 13 13 chr3 18317212 18317291 -199719867 - MIR SINE MIR -94 114 36 277 195 244 0 chr3 18317395 18317477 -199719681 - MIR SINE MIR -98 164 63 181 273 18 18 chr3 18317509 18317564 -199719594 - MIR SINE MIR -133 75 21 464 174 69 142 chr3 18317806 18318015 -199719143 - MLT1G1 LTR MaLR -5 525 288 * 639 250 17 56 chr3 18318010 18318131 -199719027 - MLT1G1 LTR MaLR -422 173 60 2023 133 10 0 chr3 18318131 18318432 -199718726 + AluSg SINE Alu 1 304 -6 639 250 17 56 chr3 18318432 18318490 -199718668 - MLT1G1 LTR MaLR -535 60 1 860 230 84 59 chr3 18319113 18319286 -199717872 - LTR16C LTR ERVL -93 398 212 2243 42 0 4 chr3 18319286 18319548 -199717610 + AluY SINE Alu 32 292 -19 860 230 84 59 chr3 18319548 18319696 -199717462 - LTR16C LTR ERVL -279 212 69 503 254 9 0 chr3 18319737 18319847 -199717311 + MER81 DNA DNA 4 114 0 814 106 0 53 chr3 18319937 18320069 -199717089 + L1MB7 LINE L1 6044 6168 -16 410 215 0 0 chr3 18320079 18320158 -199717000 + L1M4 LINE L1 4781 4859 -1287 663 236 32 25 chr3 18320173 18320330 -199716828 - MLT1D LTR MaLR -347 158 1 445 205 170 0 chr3 18320333 18320445 -199716713 - MIR SINE MIR -118 144 14 526 310 6 6 chr3 18320743 18320914 -199716244 + MIR SINE MIR 20 190 -72 506 270 31 13 chr3 18321341 18321500 -199715658 - MIR SINE MIR -11 251 90 1216 307 141 4 chr3 18321811 18322306 -199714852 - MLT1K LTR MaLR -2 586 24 437 302 58 23 chr3 18322627 18322799 -199714359 + MLT1J2 LTR MaLR 273 450 0 1966 94 68 0 chr3 18322812 18323115 -199714043 + AluSg SINE Alu 1 321 0 676 295 50 96 chr3 18323174 18323259 -199713899 - LTR67 LTR ERVL -2 555 468 1977 114 0 14 chr3 18323259 18323540 -199713618 + AluSx SINE Alu 27 303 -9 676 295 50 96 chr3 18323540 18323935 -199713223 - LTR67 LTR ERVL -89 468 97 265 156 16 16 chr3 18324242 18324306 -199712852 + MER5A DNA MER1_type 31 94 -95 517 272 146 13 chr3 18324322 18324480 -199712678 - MER5A DNA MER1_type -7 182 4 196 326 66 41 chr3 18324480 18324673 -199712485 - L2 LINE L2 -699 2615 2418 387 216 80 74 chr3 18325385 18325561 -199711597 - MIR SINE MIR -49 213 37 225 267 33 67 chr3 18326273 18326363 -199710795 + MIR SINE MIR 40 127 -81 249 139 0 0 chr3 18327644 18327687 -199709471 + (A)n Simple_repeat Simple_repeat 1 43 0 382 291 29 0 chr3 18327688 18327791 -199709367 + MIR SINE MIR 47 152 -56 671 272 59 28 chr3 18328081 18328324 -199708834 + MIR SINE MIR 18 262 0 236 319 14 0 chr3 18328448 18328517 -199708641 - L2 LINE L2 -16 3297 3228 1512 149 47 70 chr3 18328801 18329102 -199708056 - AluJo SINE Alu -1 311 18 252 312 128 32 chr3 18329191 18329316 -199707842 - L2 LINE L2 -2 3270 3134 1903 178 0 0 chr3 18329351 18329654 -199707504 - AluJo SINE Alu -9 303 1 514 213 74 111 chr3 18329825 18330069 -199707089 - MLT1K LTR MaLR 0 588 354 822 321 92 7 chr3 18330106 18330529 -199706629 + LTR16B LTR ERVL 1 459 -5 1310 275 45 19 chr3 18330536 18330700 -199706458 + LTR16B LTR ERVL 22 180 -284 818 186 8 0 chr3 18330700 18330824 -199706334 - FLAM_A SINE Alu -8 125 1 1310 275 45 19 chr3 18330824 18331085 -199706073 + LTR16B LTR ERVL 180 458 -6 1907 173 7 0 chr3 18331085 18331380 -199705778 + AluJb SINE Alu 1 297 -15 1826 175 13 0 chr3 18331680 18331988 -199705170 + AluJb SINE Alu 1 312 0 688 281 31 5 chr3 18333107 18333303 -199703855 - MIR SINE MIR -22 240 40 2058 140 17 70 chr3 18333663 18334082 -199703076 + MER57A LTR ERV1 7 372 -1 385 295 104 60 chr3 18334127 18335040 -199702118 - L1M4 LINE L1 -824 5322 4370 446 286 147 83 chr3 18335639 18335905 -199701253 - L2 LINE L2 -17 3255 2973 1344 275 43 18 chr3 18335921 18336258 -199700900 + LTR16C LTR ERVL 89 439 -52 16436 112 24 33 chr3 18336258 18338696 -199698462 - Tigger1 DNA MER2_type -1 2417 1 1344 275 43 18 chr3 18338696 18338751 -199698407 + LTR16C LTR ERVL 439 491 0 325 278 53 20 chr3 18338766 18338917 -199698241 - L2 LINE L2 -303 2969 2814 216 273 0 0 chr3 18339542 18339619 -199697539 + CT-rich Low_complexity Low_complexity 4 80 0 303 312 37 28 chr3 18339621 18339730 -199697428 - L2 LINE L2 -40 3232 3123 371 341 119 6 chr3 18339889 18340065 -199697093 - MIR SINE MIR -19 243 48 388 311 54 7 chr3 18340300 18340448 -199696710 + MIR SINE MIR 50 204 -58 353 295 54 0 chr3 18341145 18341274 -199695884 + MIR SINE MIR 125 260 -2 918 108 39 8 chr3 18341434 18341564 -199695594 - AluJb SINE Alu -16 296 163 191 275 110 55 chr3 18341569 18341678 -199695480 - MIR SINE MIR -116 146 32 376 307 119 11 chr3 18341743 18341919 -199695239 - MIR SINE MIR -34 228 34 372 319 148 14 chr3 18342659 18342869 -199694289 + MIR SINE MIR 25 262 0 342 246 0 88 chr3 18343135 18343249 -199693909 - MIR3 SINE MIR -35 173 70 343 284 64 46 chr3 18343514 18343661 -199693497 - MIR SINE MIR -67 141 32 269 366 69 0 chr3 18343971 18344072 -199693086 - MIR SINE MIR -85 123 16 191 288 108 81 chr3 18345156 18345267 -199691891 - L2 LINE L2 -23 3249 3136 210 342 26 0 chr3 18345329 18345405 -199691753 - L2 LINE L2 -33 3239 3162 2392 79 3 0 chr3 18345914 18346206 -199690952 + AluSp SINE Alu 1 293 -20 287 362 121 24 chr3 18346321 18346528 -199690630 - L2 LINE L2 -14 3258 3032 275 302 50 115 chr3 18346551 18346872 -199690286 + L2 LINE L2 2941 3240 -32 335 258 121 16 chr3 18347108 18347232 -199689926 - MIR SINE MIR -44 218 82 507 134 0 0 chr3 18347767 18347849 -199689309 + (TG)n Simple_repeat Simple_repeat 2 83 0 346 268 122 98 chr3 18348173 18348778 -199688380 + L1M2 LINE L1 468 1374 -5475 438 289 50 16 chr3 18350547 18350668 -199686490 - MIR SINE MIR -136 126 2 200 298 192 10 chr3 18352305 18352409 -199684749 - L2 LINE L2 -11 3261 3139 477 263 171 7 chr3 18352440 18352592 -199684566 + MER5A DNA MER1_type 12 188 -1 494 311 147 11 chr3 18353184 18353361 -199683797 - MIR3 SINE MIR -6 202 2 355 307 35 35 chr3 18353497 18353611 -199683547 - MIR3 SINE MIR -89 119 6 1959 141 24 3 chr3 18353822 18354120 -199683038 + AluSx SINE Alu 1 304 -8 379 305 19 19 chr3 18354575 18354680 -199682478 + MIR3 SINE MIR 82 186 -22 183 376 88 8 chr3 18355631 18355756 -199681402 + MIR SINE MIR 2 136 -126 * 243 329 79 0 chr3 18355749 18355825 -199681333 - L2 LINE L2 -3 3310 3229 232 245 32 43 chr3 18355826 18355920 -199681238 + MIR SINE MIR 120 212 -50 813 200 0 7 chr3 18357139 18357274 -199679884 - AluJo SINE Alu -177 135 2 357 343 78 24 chr3 18357274 18357609 -199679549 + L2 LINE L2 2036 2388 -926 566 357 80 52 chr3 18357633 18358264 -199678894 + L2 LINE L2 2618 3258 -14 301 277 95 36 chr3 18360442 18360579 -199676579 + MIR SINE MIR 3 147 -61 2178 106 17 0 chr3 18360582 18360875 -199676283 + AluSx SINE Alu 1 298 -14 520 183 263 66 chr3 18361253 18361466 -199675692 - MIR SINE MIR 0 262 8 227 294 203 7 chr3 18361552 18361695 -199675463 + MIR SINE MIR 82 252 -10 585 251 18 35 chr3 18361976 18362147 -199675011 - MIR SINE MIR -47 215 48 226 257 98 98 chr3 18362114 18362379 -199674779 - L2 LINE L2 -158 3114 2850 * 232 186 0 0 chr3 18362692 18362735 -199674423 + MIR SINE MIR 108 150 -112 255 322 100 27 chr3 18363737 18363921 -199673237 - MIR SINE MIR -35 173 10 304 273 13 67 chr3 18364785 18364935 -199672223 - L2 LINE L2 -55 3258 3117 489 172 86 11 chr3 18365510 18365603 -199671555 + AluJo SINE Alu 36 135 -177 1895 148 0 42 chr3 18365790 18366101 -199671057 + AluSx SINE Alu 1 298 -14 298 262 159 0 chr3 18366154 18366261 -199670897 + L2 LINE L2 3186 3309 -4 2269 94 0 7 chr3 18366404 18366715 -199670443 - AluSc SINE Alu 0 309 1 964 132 0 0 chr3 18366726 18366855 -199670303 - FLAM_C SINE Alu -4 129 1 246 257 80 35 chr3 18367073 18367186 -199669972 + MIR SINE MIR 94 211 -51 21 0 0 0 chr3 18367204 18367225 -199669933 + AT_rich Low_complexity Low_complexity 1 21 0 336 320 47 47 chr3 18367666 18367922 -199669236 - L2 LINE L2 -541 2773 2518 2015 236 55 54 chr3 18368007 18368160 -199668998 - L1ME3A LINE L1 -13 6157 6006 2111 88 0 11 chr3 18368160 18368434 -199668724 - AluSg SINE Alu -6 304 34 2015 236 55 54 chr3 18368434 18368938 -199668220 - L1ME3A LINE L1 -164 6006 5496 1828 167 37 45 chr3 18368938 18369315 -199667843 - MLT1A2 LTR MaLR 0 374 1 2015 236 55 54 chr3 18369315 18369344 -199667814 - L1ME3A LINE L1 -674 5496 5469 298 315 54 34 chr3 18369416 18369565 -199667593 - MIR SINE MIR -15 247 96 226 330 45 11 chr3 18370035 18370123 -199667035 + MIR3 SINE MIR 68 158 -50 189 265 73 0 chr3 18370458 18370526 -199666632 + L3b LINE CR1 1175 1247 -336 434 273 162 15 chr3 18371613 18371798 -199665360 - MIR SINE MIR -48 214 5 222 206 0 0 chr3 18371958 18372026 -199665132 + T-rich Low_complexity Low_complexity 1 68 0 38529 32 26 2 chr3 18372026 18377334 -199659824 - L1PA2 LINE L1 -137 6018 578 698 25 0 0 chr3 18377301 18377381 -199659777 - L1PA2 LINE L1 -6048 98 19 * 4489 157 16 35 chr3 18377531 18378459 -199658699 - L1MB7 LINE L1 -19 6165 5255 1807 183 69 19 chr3 18378463 18378840 -199658318 - MSTD LTR MaLR 0 396 1 7159 209 18 48 chr3 18378860 18379396 -199657762 - MSTD-int LTR MaLR -29 1706 1155 3972 178 31 23 chr3 18379396 18380173 -199656985 - LTR39 LTR ERV1 0 783 1 7159 209 18 48 chr3 18380173 18381395 -199655763 - MSTD-int LTR MaLR -580 1155 2 1691 152 42 115 chr3 18381396 18381823 -199655335 - MSTD LTR MaLR 0 396 1 6057 181 34 25 chr3 18381827 18383324 -199653834 - L1MB7 LINE L1 -895 5251 3741 216 0 0 0 chr3 18383564 18383588 -199653570 + (T)n Simple_repeat Simple_repeat 1 24 0 1802 52 0 0 chr3 18384441 18384653 -199652505 - AluY SINE Alu -6 305 94 185 303 63 49 chr3 18385619 18385761 -199651397 + L2 LINE L2 2608 2751 -563 380 323 39 2 chr3 18386256 18386411 -199650747 - MIR SINE MIR -50 212 44 1138 212 44 26 chr3 18386666 18387006 -199650152 + MLT1C LTR MaLR 59 404 -63 1559 200 13 29 chr3 18387027 18387342 -199649816 - AluJo SINE Alu -2 310 1 256 196 0 0 chr3 18387368 18387424 -199649734 + MLT1C LTR MaLR 447 502 -3 464 264 68 14 chr3 18387433 18387581 -199649577 - MIR SINE MIR 0 262 107 193 333 98 29 chr3 18388006 18388108 -199649050 + L2 LINE L2 3197 3305 -8 198 0 0 0 chr3 18388175 18388197 -199648961 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 378 0 0 0 chr3 18388196 18388238 -199648920 + (CA)n Simple_repeat Simple_repeat 1 42 0 619 296 63 0 chr3 18388852 18389041 -199648117 - MIR SINE MIR -4 258 58 252 313 0 36 chr3 18389908 18389991 -199647167 + MIR SINE MIR 1 80 -182 418 306 93 11 chr3 18390018 18390201 -199646957 + L2 LINE L2 3115 3312 -1 1371 293 75 38 chr3 18390235 18391023 -199646135 - L2 LINE L2 -201 3071 2262 793 315 165 24 chr3 18391138 18391720 -199645438 - L2 LINE L2 -1672 1642 978 357 246 0 0 chr3 18391720 18391785 -199645373 - MER5A DNA MER1_type 0 189 125 1878 131 23 36 chr3 18392188 18392493 -199644665 - AluJb SINE Alu -11 301 1 282 196 0 0 chr3 18392592 18392638 -199644520 - MIR SINE MIR -1 261 216 588 294 56 10 chr3 18392684 18392881 -199644277 - MIR SINE MIR -49 213 8 217 300 0 17 chr3 18393090 18393150 -199644008 - L2 LINE L2 -2 3311 3253 1887 132 10 13 chr3 18393253 18393564 -199643594 + AluSx SINE Alu 3 312 0 221 163 0 0 chr3 18393937 18393980 -199643178 + T-rich Low_complexity Low_complexity 1 43 0 1819 86 0 4 chr3 18393984 18394216 -199642942 - AluSq SINE Alu -82 231 1 2188 129 0 0 chr3 18394356 18394658 -199642500 - AluSg SINE Alu -8 302 1 2723 25 0 16 chr3 18394728 18395051 -199642107 - AluYb8 SINE Alu 0 318 1 288 209 30 15 chr3 18395543 18395610 -199641548 - MIR3 SINE MIR -4 204 137 332 236 136 43 chr3 18396140 18396280 -199640878 - MIR SINE MIR -10 252 100 412 265 62 39 chr3 18396986 18397142 -199640016 - MIR SINE MIR -58 204 47 2316 87 0 0 chr3 18397148 18397434 -199639724 + AluSg SINE Alu 1 286 -24 216 0 0 0 chr3 18397437 18397461 -199639697 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 348 270 70 43 chr3 18397529 18397714 -199639444 - HAL1 LINE L1 -291 2216 2027 206 108 54 0 chr3 18397789 18397826 -199639332 + (TTAAA)n Simple_repeat Simple_repeat 4 42 0 24 0 0 0 chr3 18397840 18397864 -199639294 + AT_rich Low_complexity Low_complexity 1 24 0 260 233 67 67 chr3 18397943 18398093 -199639065 - LTR16C LTR ERVL -15 476 327 800 294 91 23 chr3 18398598 18398983 -199638175 - HAL1 LINE L1 -599 1908 1498 345 256 141 34 chr3 18398983 18399460 -199637698 + L1M4 LINE L1 2566 3093 -3053 559 293 29 10 chr3 18399510 18399817 -199637341 - L1M4 LINE L1 -1523 4623 4311 * 715 229 132 49 chr3 18399816 18400165 -199636993 + L1MC5 LINE L1 7148 7525 -436 299 222 39 78 chr3 18400259 18400412 -199636746 + L1ME3 LINE L1 5961 6107 -55 2160 98 0 4 chr3 18401019 18401294 -199635864 + AluSx SINE Alu 1 274 -38 303 49 0 0 chr3 18401294 18401335 -199635823 + (TG)n Simple_repeat Simple_repeat 2 42 0 256 238 59 50 chr3 18401930 18402031 -199635127 + MER5A DNA MER1_type 8 109 -80 5091 125 8 26 chr3 18403053 18403851 -199633307 - LTR39 LTR ERV1 0 783 1 4428 210 50 15 chr3 18403956 18405305 -199631853 + L1MC3 LINE L1 42 1444 -4850 4617 219 55 15 chr3 18405326 18406667 -199630491 + L1MC3 LINE L1 4321 5715 -849 5463 147 37 6 chr3 18406671 18407692 -199629466 + L1MC3 LINE L1 5991 7043 -1160 3213 156 85 7 chr3 18407683 18408364 -199628794 + L1MC3 LINE L1 7276 8009 -194 * 4349 168 47 35 chr3 18408374 18409124 -199628034 + L1MB7 LINE L1 5112 5699 -485 4835 109 16 15 chr3 18409124 18409873 -199627285 + L1PA16 LINE L1 5406 6157 -9 4349 168 47 35 chr3 18409873 18410350 -199626808 + L1MB7 LINE L1 5699 6169 -15 1636 133 71 41 chr3 18410753 18411172 -199625986 - THE1C LTR MaLR 0 428 1 198 309 12 37 chr3 18411553 18411634 -199625524 + L2 LINE L2 1631 1709 -1605 24 0 0 0 chr3 18411753 18411777 -199625381 + AT_rich Low_complexity Low_complexity 1 24 0 1682 178 11 7 chr3 18411784 18412065 -199625093 + AluJb SINE Alu 1 282 -30 237 65 0 0 chr3 18412065 18412096 -199625062 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 1696 226 43 25 chr3 18412206 18412764 -199624394 - HAL1 LINE L1 -853 1654 1087 3386 165 18 45 chr3 18412794 18413253 -199623905 - L1MB8 LINE L1 -47 6131 5662 2304 83 0 20 chr3 18413253 18413554 -199623604 - AluSg SINE Alu -15 295 1 3386 165 18 45 chr3 18413554 18413800 -199623358 - L1MB8 LINE L1 -516 5662 5445 1765 178 26 13 chr3 18413800 18414104 -199623054 - AluJo SINE Alu -1 311 4 3386 165 18 45 chr3 18414104 18414159 -199622999 - L1MB8 LINE L1 -733 5445 5390 2236 215 34 2 chr3 18416111 18416665 -199620493 - L1MB8 LINE L1 -756 5390 4819 1811 284 117 34 chr3 18416663 18417669 -199619489 - HAL1 LINE L1 -1415 1092 3 * 793 284 109 23 chr3 18417688 18418349 -199618809 - L1MB8 LINE L1 -3316 2830 2113 328 315 57 12 chr3 18419092 18419261 -199617897 - MIR SINE MIR -65 197 17 1092 233 4 45 chr3 18419907 18420173 -199616985 - MIR SINE MIR -6 256 2 546 261 149 5 chr3 18420593 18420781 -199616377 - MIR SINE MIR -1 261 47 16785 134 12 3 chr3 18421327 18424901 -199612257 - L1PA10 LINE L1 -9 6159 2557 296 299 57 93 chr3 18425935 18426002 -199611156 + L3 LINE CR1 1305 1373 -204 3001 173 45 2 chr3 18426002 18426539 -199610619 - MER68 LTR ERV1 0 562 3 296 299 57 93 chr3 18426539 18426665 -199610493 + L3 LINE CR1 1373 1491 -86 255 314 58 73 chr3 18426909 18427015 -199610143 - L3 LINE CR1 -140 1437 1332 2215 128 0 0 chr3 18427015 18427319 -199609839 - AluSx SINE Alu -8 304 1 255 314 58 73 chr3 18427319 18427349 -199609809 - L3 LINE CR1 -245 1332 1303 442 327 70 55 chr3 18428012 18428269 -199608889 - L3 LINE CR1 -58 1519 1259 21 36 0 0 chr3 18428345 18428373 -199608785 + AT_rich Low_complexity Low_complexity 1 28 0 10699 197 59 32 chr3 18428418 18429360 -199607798 + L1MA7 LINE L1 2872 3787 -3923 312 91 0 0 chr3 18429360 18429404 -199607754 + (CA)n Simple_repeat Simple_repeat 2 45 0 10699 197 59 32 chr3 18429404 18431548 -199605610 + L1MA7 LINE L1 3787 5872 -1838 1256 164 23 18 chr3 18431548 18431767 -199605391 + AluJb SINE Alu 70 289 -23 10699 197 59 32 chr3 18431767 18433145 -199604013 + L1MA7 LINE L1 5872 7674 -36 2797 79 37 8 chr3 18433145 18433498 -199603660 - THE1B LTR MaLR -1 363 1 10699 197 59 32 chr3 18433498 18433536 -199603622 + L1MA7 LINE L1 7674 7710 0 646 226 0 0 chr3 18433536 18433642 -199603516 + FLAM_A SINE Alu 1 106 -36 21 36 0 0 chr3 18433642 18433670 -199603488 + AT_rich Low_complexity Low_complexity 1 28 0 232 356 85 27 chr3 18433848 18434036 -199603122 + MIR3 SINE MIR 9 207 -1 473 308 0 27 chr3 18434438 18434584 -199602574 + MIR3 SINE MIR 16 157 -51 316 292 22 22 chr3 18435524 18435613 -199601545 - MIR SINE MIR -82 126 38 216 281 64 94 chr3 18436622 18436793 -199600365 + L2 LINE L2 3101 3266 -6 342 291 64 0 chr3 18437035 18437145 -199600013 + MIR3 SINE MIR 87 203 -5 2207 112 10 3 chr3 18437867 18438162 -199598996 - AluSx SINE Alu -15 297 1 200 217 0 109 chr3 18438195 18438287 -199598871 + L2 LINE L2 3153 3234 -79 277 310 77 13 chr3 18438352 18438507 -199598651 - MIR SINE MIR -9 253 89 * 391 270 81 64 chr3 18438480 18438710 -199598448 + MIR SINE MIR 5 233 -29 514 293 224 33 chr3 18438724 18439148 -199598010 - L2 LINE L2 -776 2538 2034 * 1146 284 155 51 chr3 18439131 18439270 -199597888 + L2 LINE L2 1772 1895 -1419 2185 103 0 16 chr3 18439270 18439582 -199597576 + AluY SINE Alu 1 307 -4 1146 284 155 51 chr3 18439582 18440299 -199596859 + L2 LINE L2 1895 2717 -597 2430 192 69 17 chr3 18440598 18441042 -199596116 + L1MEc LINE L1 1172 1649 -4997 5489 41 0 44 chr3 18441042 18441333 -199595825 + L1PA5 LINE L1 5507 5809 -345 2458 87 0 0 chr3 18441333 18441642 -199595516 + AluY SINE Alu 1 309 -2 5489 41 0 44 chr3 18441642 18442028 -199595130 + L1PA5 LINE L1 5809 6154 0 2430 192 69 17 chr3 18442028 18442367 -199594791 + L1MEc LINE L1 1649 1969 -4677 * 3930 218 59 17 chr3 18442365 18442865 -199594293 + L1MB7 LINE L1 2268 2745 -3899 225 0 0 0 chr3 18442865 18442890 -199594268 + (TA)n Simple_repeat Simple_repeat 1 25 0 3930 218 59 17 chr3 18442890 18443689 -199593469 + L1MB7 LINE L1 2745 3622 -3022 2616 52 0 3 chr3 18443691 18443998 -199593160 + AluY SINE Alu 1 306 -5 4579 182 55 27 chr3 18444003 18445657 -199591501 + L1MB7 LINE L1 4948 6663 -19 341 169 26 39 chr3 18446799 18446876 -199590282 + MLT1I LTR MaLR 334 409 0 257 291 13 0 chr3 18446886 18446977 -199590181 + L1MEc LINE L1 1960 2090 -915 981 239 26 4 chr3 18446980 18447206 -199589952 - MIR SINE MIR 0 262 32 216 304 0 0 chr3 18447608 18447664 -199589494 + MER5A DNA MER1_type 128 183 -6 263 261 133 9 chr3 18447906 18448132 -199589026 + L1MEc LINE L1 2628 2881 -3763 810 179 33 20 chr3 18448161 18448312 -199588846 - FRAM SINE Alu -4 172 20 492 277 50 21 chr3 18448354 18448596 -199588562 + L1MEc LINE L1 2961 3209 -3435 2064 108 36 16 chr3 18448602 18448908 -199588250 - AluSx SINE Alu 0 312 1 180 308 58 0 chr3 18449424 18449476 -199587682 + L2 LINE L2 3218 3272 0 1609 159 4 4 chr3 18450110 18450368 -199586790 - AluJb SINE Alu -54 258 1 689 219 0 0 chr3 18450557 18450671 -199586487 - FLAM_C SINE Alu -25 118 5 205 274 32 16 chr3 18451648 18451710 -199585448 + L2 LINE L2 2608 2670 -644 275 262 3 0 chr3 18452336 18452413 -199584745 - MIR SINE MIR -68 140 71 236 209 121 22 chr3 18452651 18452742 -199584416 + LTR16B LTR ERVL 360 459 -5 1158 289 44 19 chr3 18452765 18452914 -199584244 + LTR16B LTR ERVL 38 182 -282 793 194 8 0 chr3 18452914 18453038 -199584120 - FLAM_A SINE Alu -8 125 1 1158 289 44 19 chr3 18453038 18453300 -199583858 + LTR16B LTR ERVL 182 459 -5 1173 195 43 8 chr3 18453301 18453557 -199583601 + AluJo SINE Alu 3 267 -45 516 177 0 21 chr3 18453662 18453758 -199583400 + MER46A DNA MER2_type 143 236 0 1908 121 18 7 chr3 18454068 18454350 -199582808 + AluJb SINE Alu 2 286 -26 428 261 83 44 chr3 18455248 18455428 -199581730 + MIR SINE MIR 49 235 -27 1697 127 14 11 chr3 18456003 18456279 -199580879 - AluSc SINE Alu -32 277 1 427 270 68 14 chr3 18456497 18456645 -199580513 + MIR SINE MIR 107 262 0 1215 220 55 41 chr3 18456654 18456736 -199580422 - MLT1C LTR MaLR -3 621 542 1373 219 13 29 chr3 18456736 18457051 -199580107 + AluJo SINE Alu 1 310 -2 1215 220 55 41 chr3 18457051 18457412 -199579746 - MLT1C LTR MaLR -82 542 59 1519 137 67 11 chr3 18457690 18457960 -199579198 - AluSg SINE Alu -25 285 1 315 289 98 46 chr3 18457979 18458152 -199579006 - MLT1J2 LTR MaLR -6 444 263 338 331 128 12 chr3 18458482 18458654 -199578504 + MLT1K LTR MaLR 39 230 -358 337 357 7 19 chr3 18459515 18459669 -199577489 + MIR3 SINE MIR 33 184 -24 180 0 0 0 chr3 18459781 18459801 -199577357 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 189 146 146 0 chr3 18459809 18459850 -199577308 - MIR SINE MIR -128 134 88 341 347 119 6 chr3 18462661 18462837 -199574321 - MIR SINE MIR -19 243 48 353 329 34 13 chr3 18463072 18463221 -199573937 + MIR SINE MIR 50 201 -61 1651 256 90 31 chr3 18464120 18464267 -199572891 - L1 LINE L1 -3541 4024 3887 288 77 0 0 chr3 18464267 18464306 -199572852 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 1651 256 90 31 chr3 18464306 18465250 -199571908 - L1 LINE L1 -3678 3887 2872 272 340 77 70 chr3 18465399 18465658 -199571500 + L3 LINE CR1 1259 1519 -58 199 255 31 122 chr3 18466413 18466511 -199570647 + L2 LINE L2 3175 3263 -9 * 204 320 60 30 chr3 18466507 18466607 -199570551 + L2 LINE L2 3151 3253 -19 1531 211 3 7 chr3 18467420 18467724 -199569434 - AluJo SINE Alu -9 303 1 1822 152 12 148 chr3 18468061 18468548 -199568610 - Tigger1 DNA MER2_type -1997 421 1 266 154 58 0 chr3 18468551 18468603 -199568555 + LTR16C LTR ERVL 437 491 0 214 273 53 40 chr3 18468622 18468772 -199568386 - L2 LINE L2 -307 2965 2814 1543 196 17 3 chr3 18469592 18469893 -199567265 - AluJb SINE Alu -7 305 1 1582 201 7 0 chr3 18470207 18470485 -199566673 - AluJb SINE Alu -28 284 5 818 248 14 18 chr3 18470488 18470706 -199566452 - LTR16B LTR ERVL -5 459 243 633 217 8 8 chr3 18470756 18470876 -199566282 + FLAM_A SINE Alu 6 125 -17 303 356 63 22 chr3 18471186 18471408 -199565750 - LTR16B LTR ERVL -170 294 64 666 226 6 88 chr3 18472089 18472270 -199564888 + FRAM SINE Alu 1 158 -18 1642 193 10 7 chr3 18472294 18472595 -199564563 + AluJo SINE Alu 5 306 -6 438 231 215 55 chr3 18472687 18473012 -199564146 + MLT1J LTR MaLR 110 486 -25 919 183 59 73 chr3 18474487 18474542 -199562616 + L1M4 LINE L1 5390 5444 -740 1750 174 26 13 chr3 18474542 18474846 -199562312 + AluJo SINE Alu 4 311 -1 919 183 59 73 chr3 18474846 18475079 -199562079 + L1M4 LINE L1 5444 5674 -510 2179 178 121 20 chr3 18475817 18476374 -199560784 - MLT1E2 LTR MaLR 0 624 1 186 202 11 146 chr3 18476374 18476463 -199560695 + L2 LINE L2 3221 3297 -16 225 65 0 0 chr3 18476912 18476943 -199560215 + (TG)n Simple_repeat Simple_repeat 2 32 0 807 167 0 0 chr3 18477532 18477646 -199559512 + FLAM_C SINE Alu 5 118 -25 1500 176 4 4 chr3 18477836 18478086 -199559072 + AluJb SINE Alu 1 250 -62 23 0 0 0 chr3 18478098 18478121 -199559037 + AT_rich Low_complexity Low_complexity 1 23 0 196 283 65 33 chr3 18478189 18478281 -199558877 - MIR SINE MIR -71 137 43 339 275 174 12 chr3 18479122 18479289 -199557869 + MIR SINE MIR 9 202 -60 188 171 49 0 chr3 18479457 18479498 -199557660 + MIR SINE MIR 214 256 -6 193 288 115 58 chr3 18479677 18479816 -199557342 + MIR SINE MIR 2 148 -114 1805 166 10 3 chr3 18479818 18480107 -199557051 + AluJo SINE Alu 3 293 -19 3070 120 263 2 chr3 18480129 18480670 -199556488 - THE1-int LTR MaLR -308 1272 591 2437 68 6 19 chr3 18480639 18480963 -199556195 + THE1B-int LTR MaLR 1261 1580 0 * 2306 107 67 12 chr3 18480963 18481308 -199555850 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 18482229 18482250 -199554908 + AT_rich Low_complexity Low_complexity 1 21 0 227 297 27 63 chr3 18482553 18482664 -199554494 - MIR SINE MIR -66 142 36 183 361 21 21 chr3 18482810 18482907 -199554251 - L2 LINE L2 -185 3087 2991 4461 167 53 22 chr3 18483354 18484520 -199552638 - L1MB5 LINE L1 -6 6168 4969 220 340 14 0 chr3 18485065 18485150 -199552008 - MIR SINE MIR -87 121 36 241 232 30 121 chr3 18485648 18485747 -199551411 + L2 LINE L2 3175 3264 -8 * 242 300 60 30 chr3 18485742 18485842 -199551316 + L2 LINE L2 3151 3253 -19 1723 192 3 7 chr3 18486651 18486959 -199550199 - AluJo SINE Alu -5 307 1 334 252 25 50 chr3 18488052 18488171 -199548987 + MIR SINE MIR 107 222 -40 841 149 8 0 chr3 18488190 18488311 -199548847 + FLAM_C SINE Alu 1 122 -21 258 208 50 0 chr3 18488333 18488415 -199548743 - MIR SINE MIR -65 143 88 1028 187 123 43 chr3 18488665 18488965 -199548193 - MER33 DNA MER1_type 0 324 1 302 371 57 7 chr3 18489250 18489390 -199547768 + L2 LINE L2 3125 3271 -1 524 259 30 0 chr3 18490051 18490186 -199546972 - MIR3 SINE MIR -49 159 21 251 295 21 21 chr3 18490754 18490849 -199546309 + L2 LINE L2 2966 3060 -212 448 340 93 42 chr3 18490936 18491292 -199545866 + L2 LINE L2 2899 3272 0 236 157 118 0 chr3 18491457 18491508 -199545650 - MLT2C1 LTR ERVL 0 397 341 583 158 26 20 chr3 18491511 18491663 -199545495 + GA-rich Low_complexity Low_complexity 3 155 0 2238 180 47 8 chr3 18491670 18492079 -199545079 - MLT2C2 LTR ERVL -46 469 1 995 298 148 20 chr3 18492210 18492697 -199544461 + L1MEd LINE L1 74 622 -5497 861 244 110 48 chr3 18492745 18493395 -199543763 + L1MEd LINE L1 815 1610 -880 683 244 0 0 chr3 18493395 18493526 -199543632 + FLAM_A SINE Alu 1 131 -11 561 215 54 8 chr3 18493574 18493654 -199543504 + AluJo SINE Alu 2 92 -220 1967 131 7 7 chr3 18493654 18493936 -199543222 + AluJb SINE Alu 19 300 -12 561 215 54 8 chr3 18493936 18493985 -199543173 + AluJo SINE Alu 92 137 -175 355 357 132 15 chr3 18494381 18494647 -199542511 + L1ME3A LINE L1 5652 5948 -222 2161 88 50 3 chr3 18494924 18495207 -199541951 - AluSg SINE Alu -14 296 1 418 330 105 19 chr3 18495421 18495745 -199541413 + L3 LINE CR1 1035 1386 -191 195 294 0 59 chr3 18495801 18495886 -199541272 + L3 LINE CR1 1470 1549 -28 733 228 101 13 chr3 18496499 18496736 -199540422 + MIR SINE MIR 5 262 0 1941 144 7 3 chr3 18497861 18498152 -199539006 - AluJb SINE Alu -20 292 1 242 255 117 21 chr3 18498341 18498435 -199538723 + MIR3 SINE MIR 68 170 -38 360 224 58 83 chr3 18498779 18498935 -199538223 - L2 LINE L2 0 3313 3162 303 174 0 71 chr3 18498938 18499036 -199538122 + A-rich Low_complexity Low_complexity 3 93 0 423 275 163 6 chr3 18499242 18499402 -199537756 - MIR SINE MIR -71 191 7 2077 129 46 9 chr3 18499691 18500039 -199537119 + MLT1A2 LTR MaLR 1 361 -13 241 275 0 15 chr3 18500039 18500170 -199536988 + (TG)n Simple_repeat Simple_repeat 1 129 0 2081 215 68 0 chr3 18500170 18500594 -199536564 - MLT2B1 LTR ERVL -67 453 1 700 273 0 44 chr3 18500945 18501128 -199536030 + MER91A DNA MER1_type 1 175 -21 795 181 0 0 chr3 18501885 18502075 -199535083 - FLAM_A SINE Alu 0 190 1 262 299 57 32 chr3 18502225 18502374 -199534784 + MIR SINE MIR 40 187 -67 241 251 42 108 chr3 18503691 18503792 -199533366 + L1MC5 LINE L1 7603 7709 -252 1068 170 60 13 chr3 18503792 18504027 -199533131 + L1MB4 LINE L1 5932 6177 -3 241 251 42 108 chr3 18504027 18504184 -199532974 + L1MC5 LINE L1 7709 7844 -117 279 274 54 113 chr3 18504414 18504600 -199532558 + L2 LINE L2 2987 3161 -111 276 266 0 0 chr3 18506212 18506276 -199530882 + MIR SINE MIR 183 246 -16 402 302 32 16 chr3 18506292 18506418 -199530740 - MIR SINE MIR -62 146 19 1982 151 0 7 chr3 18506872 18507170 -199529988 + AluJo SINE Alu 5 300 -12 440 290 98 81 chr3 18507253 18507650 -199529508 + L1MC4a LINE L1 5521 5924 -1884 253 322 44 0 chr3 18507847 18507937 -199529221 - MIR SINE MIR -148 114 21 239 278 111 9 chr3 18508428 18508536 -199528622 + MIR3 SINE MIR 49 167 -41 341 319 84 24 chr3 18509334 18509575 -199527583 + MIR SINE MIR 8 256 -6 350 333 57 8 chr3 18510348 18510471 -199526687 - MIR SINE MIR -64 144 16 296 308 23 30 chr3 18511308 18511441 -199525717 - MIR SINE MIR -112 150 19 423 277 18 44 chr3 18511489 18511708 -199525450 + MIR3 SINE MIR 4 216 -46 3685 152 9 9 chr3 18513190 18513821 -199523337 - L1PB4 LINE L1 0 6156 5526 2056 128 3 32 chr3 18514643 18514956 -199522202 + AluSx SINE Alu 1 304 -8 734 194 0 0 chr3 18515035 18515159 -199521999 + AluJo SINE Alu 12 135 -177 1594 200 7 0 chr3 18515159 18515444 -199521714 + AluJo SINE Alu 1 287 -25 234 186 0 0 chr3 18515452 18515495 -199521663 + MIR3 SINE MIR 136 178 -30 348 201 153 35 chr3 18516369 18516513 -199520645 - MIR SINE MIR -25 237 77 318 50 0 0 chr3 18517093 18517133 -199520025 + (TG)n Simple_repeat Simple_repeat 2 41 0 298 176 0 0 chr3 18517623 18517674 -199519484 + MIR SINE MIR 113 163 -99 2315 87 3 7 chr3 18517736 18518034 -199519124 + AluY SINE Alu 1 297 -14 240 306 45 32 chr3 18519411 18519568 -199517590 + MIR3 SINE MIR 36 194 -14 428 265 27 34 chr3 18519821 18519968 -199517190 - MIR3 SINE MIR -48 160 15 426 253 81 46 chr3 18520285 18520459 -199516699 + MIR3 SINE MIR 15 194 -14 253 263 137 3 chr3 18520760 18520894 -199516264 + MIR SINE MIR 21 167 -64 230 282 0 59 chr3 18520998 18521083 -199516075 + L2 LINE L2 3231 3310 -3 289 305 150 10 chr3 18523812 18524012 -199513146 + MIR SINE MIR 31 258 -4 260 330 0 31 chr3 18524609 18524706 -199512452 + MIR SINE MIR 20 113 -149 359 0 0 0 chr3 18524935 18524976 -199512182 - 5S rRNA rRNA -79 42 2 204 343 43 14 chr3 18525278 18525418 -199511740 - L2 LINE L2 -220 3052 2909 249 277 18 54 chr3 18525624 18525736 -199511422 + L2 LINE L2 3144 3251 -21 252 351 153 13 chr3 18526354 18526582 -199510576 + L3 LINE CR1 1309 1568 -9 467 324 78 21 chr3 18527892 18528173 -199508985 - L2 LINE L2 -31 3241 2945 203 235 12 35 chr3 18529150 18529235 -199507923 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 2246 109 0 0 chr3 18529665 18529977 -199507181 + AluSx SINE Alu 1 312 0 418 239 172 8 chr3 18530111 18530245 -199506913 + MIR3 SINE MIR 30 185 -23 525 257 99 20 chr3 18530528 18530680 -199506478 - MIR3 SINE MIR -30 178 15 477 202 65 16 chr3 18531240 18531364 -199505794 + MIR3 SINE MIR 51 180 -28 1176 234 87 36 chr3 18532199 18532614 -199504544 + Charlie4a DNA MER1_type 39 474 -34 2412 62 0 7 chr3 18532863 18533171 -199503987 + AluY SINE Alu 1 306 -5 248 338 40 71 chr3 18533351 18533549 -199503609 + L2 LINE L2 3065 3256 -16 1767 143 42 0 chr3 18533699 18533985 -199503173 + AluJb SINE Alu 1 298 -14 2178 92 7 3 chr3 18534880 18535184 -199501974 - AluSc SINE Alu 0 309 5 180 294 206 29 chr3 18535555 18535657 -199501501 - L2 LINE L2 -25 3247 3128 289 385 37 0 chr3 18535797 18535906 -199501252 + MIR SINE MIR 35 147 -61 284 310 70 0 chr3 18536303 18536403 -199500755 - MIR SINE MIR -68 140 34 284 250 12 50 chr3 18536496 18536576 -199500582 - MIR SINE MIR -117 145 69 1048 110 7 13 chr3 18537416 18537570 -199499588 + MSTB1 LTR MaLR 276 428 -4 2468 163 5 0 chr3 18537573 18537978 -199499180 + MSTB1-int LTR MaLR 15 421 -1230 447 281 68 14 chr3 18538636 18538782 -199498376 - MIR3 SINE MIR -37 171 18 239 247 14 55 chr3 18539033 18539106 -199498052 + MIR3 SINE MIR 102 171 -37 293 313 35 26 chr3 18540562 18540677 -199496481 + MIR SINE MIR 30 145 -63 362 254 16 22 chr3 18540726 18540877 -199496281 + MIR SINE MIR 3 132 -76 457 315 14 14 chr3 18541524 18541667 -199495491 + MIR3 SINE MIR 13 155 -53 742 216 47 0 chr3 18542028 18542176 -199494982 + MIR3 SINE MIR 33 187 -21 1246 277 51 31 chr3 18542267 18542759 -199494399 - MER77 LTR ERV1 -6 599 52 191 200 432 11 chr3 18543267 18543362 -199493796 + L2 LINE L2 1443 1577 -1737 1384 274 159 21 chr3 18543376 18543539 -199493619 + L2 LINE L2 1723 1862 -1452 2052 105 21 0 chr3 18543539 18543824 -199493334 + AluSg SINE Alu 1 291 -19 1384 274 159 21 chr3 18543824 18544269 -199492889 + L2 LINE L2 1862 2415 -899 595 302 201 17 chr3 18544301 18544398 -199492760 + L2 LINE L2 2889 2967 -346 2129 84 7 3 chr3 18544398 18544684 -199492474 - AluSc SINE Alu -22 287 1 595 302 201 17 chr3 18544684 18544930 -199492228 + L2 LINE L2 2967 3295 -18 625 195 134 12 chr3 18544933 18545097 -199492061 + MER97c DNA MER1_type? 1 184 -906 786 303 174 31 chr3 18546431 18546949 -199490209 + L3 LINE CR1 982 1573 -4 1173 98 186 0 chr3 18547135 18547329 -199489829 - MER30 DNA MER1_type 0 230 1 298 256 107 74 chr3 18548735 18548856 -199488302 - MIR SINE MIR -114 148 24 222 37 0 0 chr3 18549275 18549302 -199487856 + (A)n Simple_repeat Simple_repeat 1 27 0 357 314 146 11 chr3 18549314 18549499 -199487659 - L3 LINE CR1 -7 1570 1361 275 169 65 52 chr3 18549501 18549578 -199487580 - MIR SINE MIR -101 161 84 389 323 106 22 chr3 18549593 18549819 -199487339 - L3 LINE CR1 -410 1167 923 1867 136 11 0 chr3 18549864 18550150 -199487008 - AluJb SINE Alu -23 289 1 512 272 163 32 chr3 18550843 18551089 -199486069 - L3 LINE CR1 -2 1575 1298 218 301 54 11 chr3 18551444 18551537 -199485621 + MIR SINE MIR 160 256 -6 235 287 157 9 chr3 18556773 18556888 -199480270 - MIR3 SINE MIR -67 141 10 225 94 0 0 chr3 18557359 18557391 -199479767 + (TCC)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chr3 18557673 18557696 -199479462 + (TG)n Simple_repeat Simple_repeat 2 24 0 215 293 132 78 chr3 18558442 18558609 -199478549 - MIR3 SINE MIR -15 193 18 1881 93 34 0 chr3 18559433 18559731 -199477427 + AluSg SINE Alu 2 308 0 300 247 133 52 chr3 18559787 18559953 -199477205 - MIR3 SINE MIR 0 208 34 240 266 0 48 chr3 18561379 18561503 -199475655 + (TG)n Simple_repeat Simple_repeat 2 119 0 1776 204 50 72 chr3 18562318 18562872 -199474286 - MER34 LTR ERV1 0 542 1 200 300 29 29 chr3 18562938 18563008 -199474150 - L2 LINE L2 0 3272 3203 * 895 271 45 20 chr3 18563004 18563248 -199473910 - MIR SINE MIR -10 252 3 700 288 121 21 chr3 18564185 18564525 -199472633 + L1MC4a LINE L1 5454 5809 -361 191 296 19 0 chr3 18564778 18564832 -199472326 - MIR SINE MIR -87 121 67 592 299 85 5 chr3 18564983 18565194 -199471964 + MIR SINE MIR 1 228 -34 314 228 188 34 chr3 18565567 18565716 -199471442 - MARNA DNA Mariner -42 544 373 468 307 56 28 chr3 18565880 18566131 -199471027 - MARNA DNA Mariner -307 279 22 388 321 138 12 chr3 18567261 18567492 -199469666 + L2 LINE L2 2560 2820 -494 397 232 136 27 chr3 18567492 18567658 -199469500 + MIR SINE MIR 2 195 -13 193 118 39 0 chr3 18568885 18568936 -199468222 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 795 153 0 22 chr3 18569637 18569774 -199467384 + AluJo SINE Alu 1 134 -178 2041 106 0 0 chr3 18570116 18570400 -199466758 - AluSc SINE Alu -8 301 18 2227 90 7 0 chr3 18571100 18571399 -199465759 + AluSx SINE Alu 1 301 -11 4926 124 8 0 chr3 18571542 18572265 -199464893 + L1PA16 LINE L1 5429 6157 -9 261 258 32 0 chr3 18573404 18573466 -199463692 - L3 LINE CR1 -2 1575 1512 350 292 98 58 chr3 18573620 18574083 -199463075 + L1M4 LINE L1 2862 3404 -2742 1303 219 58 20 chr3 18574097 18574395 -199462763 - Charlie1b DNA MER1_type -2260 501 130 1973 138 7 0 chr3 18574395 18574692 -199462466 - AluSx SINE Alu -13 299 1 1303 219 58 20 chr3 18574692 18574818 -199462340 - Charlie1b DNA MER1_type -2631 130 10 263 267 100 68 chr3 18574868 18575377 -199461781 + L1M4 LINE L1 3689 4210 -1936 287 303 63 19 chr3 18575470 18575749 -199461409 - L1 LINE L1 -1313 4833 4541 883 189 91 42 chr3 18575778 18576043 -199461115 + L2 LINE L2 3031 3308 -5 1887 118 51 0 chr3 18576133 18576429 -199460729 - AluSx SINE Alu -1 311 1 2018 107 0 4 chr3 18576461 18576741 -199460417 - AluSg SINE Alu -31 279 1 558 277 139 60 chr3 18576755 18577130 -199460028 - L1 LINE L1 -1772 4374 3967 941 309 98 48 chr3 18577279 18577787 -199459371 - L1M4 LINE L1 -1133 5013 4447 808 163 0 0 chr3 18577787 18577910 -199459248 - FLAM_A SINE Alu -10 123 1 941 309 98 48 chr3 18577910 18578225 -199458933 - L1M4 LINE L1 -1699 4447 4149 * 1038 249 103 47 chr3 18578200 18578706 -199458452 - L1M4 LINE L1 -940 5206 4673 855 238 46 19 chr3 18578723 18579046 -199458112 - L1M4 LINE L1 -1543 4603 4272 893 286 40 19 chr3 18579053 18579368 -199457790 - L1MA9 LINE L1 -30 6282 5958 1775 150 34 17 chr3 18579368 18579662 -199457496 - AluJb SINE Alu -13 299 1 950 239 16 3 chr3 18579687 18579948 -199457210 - L1M4 LINE L1 -1107 5039 4776 1705 230 8 44 chr3 18580773 18581247 -199455911 + MLT2B1 LTR ERVL 1 457 -63 207 0 0 0 chr3 18581301 18581324 -199455834 + (TG)n Simple_repeat Simple_repeat 2 24 0 363 278 130 68 chr3 18581594 18581756 -199455402 - MER5B DNA MER1_type -6 172 1 195 234 85 53 chr3 18581842 18581862 -199455296 - MIR SINE MIR 0 262 244 789 148 7 22 chr3 18581862 18581997 -199455161 + FLAM_C SINE Alu 1 133 0 195 234 85 53 chr3 18581997 18582070 -199455088 - MIR SINE MIR -18 244 166 299 301 117 6 chr3 18582096 18582259 -199454899 - MIR SINE MIR -3 259 79 1517 159 31 70 chr3 18582364 18582748 -199454410 - L1ME2 LINE L1 -5 6159 5791 2164 231 54 23 chr3 18582750 18583476 -199453682 - L1M4c LINE L1 -4861 1523 776 2313 57 29 0 chr3 18583477 18583757 -199453401 - AluY SINE Alu -23 288 1 761 237 58 19 chr3 18583825 18584137 -199453021 + L1M4 LINE L1 1964 2287 -4109 2077 120 0 34 chr3 18584197 18584521 -199452637 - AluSp SINE Alu 0 313 1 2140 145 0 0 chr3 18584532 18584835 -199452323 - AluSx SINE Alu -9 303 1 1181 193 30 4 chr3 18584889 18585159 -199451999 + L1M4 LINE L1 5332 5608 -645 * 4404 170 53 59 chr3 18585158 18585199 -199451959 + L1MB4 LINE L1 4274 4314 -1866 1574 149 97 0 chr3 18585199 18585508 -199451650 + MER44D DNA MER2_type 1 609 0 4404 170 53 59 chr3 18585508 18586244 -199450914 + L1MB4 LINE L1 4314 5053 -1127 2446 83 0 0 chr3 18586244 18586546 -199450612 - AluY SINE Alu -9 302 1 4404 170 53 59 chr3 18586546 18587689 -199449469 + L1MB4 LINE L1 5053 6172 -8 2172 99 3 3 chr3 18587777 18588081 -199449077 + AluSx SINE Alu 1 304 -8 783 153 0 22 chr3 18588423 18588560 -199448598 - AluJo SINE Alu -178 134 1 230 122 41 0 chr3 18589263 18589312 -199447846 + (CAAA)n Simple_repeat Simple_repeat 4 54 0 393 231 135 27 chr3 18590545 18590705 -199446453 - MIR SINE MIR -22 186 2 380 321 138 12 chr3 18590705 18590936 -199446222 - L2 LINE L2 -494 2820 2560 1857 185 110 17 chr3 18591564 18592015 -199445143 - MLT1E2 LTR MaLR 0 572 111 2242 104 7 0 chr3 18593453 18593750 -199443408 + AluSx SINE Alu 1 299 -13 265 298 37 16 chr3 18593931 18594119 -199443039 + L1P4 LINE L1 5466 5657 -509 2228 95 7 10 chr3 18594390 18594696 -199442462 + AluSc SINE Alu 5 309 0 337 265 11 76 chr3 18595602 18595722 -199441436 - L1M4 LINE L1 -6363 179 74 2397 63 26 0 chr3 18595722 18596025 -199441133 - AluY SINE Alu 0 311 1 337 265 11 76 chr3 18596025 18596089 -199441069 - L1M4 LINE L1 -6468 74 7 761 237 58 19 chr3 18596093 18596405 -199440753 + L1M4 LINE L1 1964 2287 -4109 2077 120 0 34 chr3 18596465 18596789 -199440369 - AluSp SINE Alu 0 313 1 2140 145 0 0 chr3 18596800 18597103 -199440055 - AluSx SINE Alu -9 303 1 1231 191 26 4 chr3 18597154 18597427 -199439731 + L1M4 LINE L1 5330 5608 -645 * 4382 171 54 59 chr3 18597426 18597467 -199439691 + L1MB4 LINE L1 4274 4314 -1866 1574 149 97 0 chr3 18597467 18597776 -199439382 + MER44D DNA MER2_type 1 609 0 4382 171 54 59 chr3 18597776 18598506 -199438652 + L1MB4 LINE L1 4314 5046 -1134 2446 83 0 0 chr3 18598506 18598808 -199438350 - AluY SINE Alu -9 302 1 4382 171 54 59 chr3 18598808 18599952 -199437206 + L1MB4 LINE L1 5046 6172 -8 1060 95 0 7 chr3 18600040 18600187 -199436971 + AluSq/x SINE Alu 1 146 -167 1758 288 96 43 chr3 18600192 18600270 -199436888 - L1MEc LINE L1 -4487 1909 1837 2053 57 30 50 chr3 18600270 18600569 -199436589 - AluY SINE Alu -18 293 1 1758 288 96 43 chr3 18600569 18600580 -199436578 - L1MEc LINE L1 -4559 1837 1828 2582 40 0 0 chr3 18600580 18600882 -199436276 - AluY SINE Alu -9 302 1 1758 288 96 43 chr3 18600882 18602433 -199434725 - L1MEc LINE L1 -4568 1828 181 1246 53 0 0 chr3 18602433 18602584 -199434574 - AluY SINE Alu 0 311 161 567 232 7 13 chr3 18602585 18602736 -199434422 - L1MEc LINE L1 -6209 187 38 192 77 0 0 chr3 18604807 18604833 -199432325 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1891 138 0 4 chr3 18604842 18605117 -199432041 - AluJo SINE Alu -36 276 3 714 271 36 24 chr3 18605404 18605789 -199431369 + LTR16A LTR ERVL 25 444 -6 2380 131 74 59 chr3 18605886 18606413 -199430745 + MER6A DNA MER2_type 1 535 -70 4714 135 8 5 chr3 18606413 18607846 -199429312 + L1MA4 LINE L1 4582 6020 -280 318 161 99 12 chr3 18607856 18607937 -199429221 + L1MB4 LINE L1 6093 6180 0 495 145 0 0 chr3 18607951 18608027 -199429131 + MER6A DNA MER2_type 524 599 -6 1188 131 35 20 chr3 18608202 18608400 -199428758 - AluJb SINE Alu -26 286 86 22 35 0 0 chr3 18608461 18608490 -199428668 + AT_rich Low_complexity Low_complexity 1 29 0 576 240 25 78 chr3 18608931 18609118 -199428040 - MIR3 SINE MIR -11 197 13 970 224 35 26 chr3 18612076 18612304 -199424854 + MIR SINE MIR 28 257 -5 2404 144 0 15 chr3 18612329 18612725 -199424433 - MLT1B LTR MaLR 0 390 1 278 215 196 28 chr3 18613782 18613889 -199423269 - MIR3 SINE MIR 0 208 84 1926 189 46 9 chr3 18614007 18614472 -199422686 + L1MB2 LINE L1 5715 6195 0 1743 161 22 59 chr3 18614480 18614804 -199422354 + AluJo SINE Alu 1 312 0 186 103 0 0 chr3 18614804 18614833 -199422325 + (GA)n Simple_repeat Simple_repeat 1 29 0 279 0 0 0 chr3 18614846 18614877 -199422281 + (CA)n Simple_repeat Simple_repeat 2 32 0 501 280 71 24 chr3 18617862 18617995 -199419163 - MIR3 SINE MIR -1 207 63 2354 90 0 3 chr3 18617995 18618305 -199418853 + AluSc SINE Alu 1 309 0 501 280 71 24 chr3 18618305 18618339 -199418819 - MIR3 SINE MIR -145 63 32 374 319 77 22 chr3 18618607 18618789 -199418369 + MIR3 SINE MIR 16 207 -1 896 110 51 16 chr3 18619203 18619355 -199417803 + L1PB4 LINE L1 5768 5913 -243 841 83 107 0 chr3 18619355 18619476 -199417682 + L1PB4 LINE L1 6011 6144 -12 896 110 51 16 chr3 18619476 18619508 -199417650 + L1PB4 LINE L1 5913 6144 -12 189 0 0 0 chr3 18620375 18620396 -199416762 + (T)n Simple_repeat Simple_repeat 1 21 0 2534 58 0 3 chr3 18620926 18621236 -199415922 - AluY SINE Alu -2 309 1 259 65 43 0 chr3 18621357 18621403 -199415755 + (CA)n Simple_repeat Simple_repeat 1 48 0 272 154 0 0 chr3 18621511 18621563 -199415595 - HAL1 LINE L1 -142 2365 2314 506 136 0 0 chr3 18621564 18621645 -199415513 - AluSg/x SINE Alu -11 298 218 4211 154 33 25 chr3 18621968 18622845 -199414313 + L1MB4 LINE L1 5297 6180 0 699 159 113 20 chr3 18623300 18623451 -199413707 + MER63 DNA MER1_type 896 1060 0 303 95 0 0 chr3 18625610 18625652 -199411506 + 5S rRNA rRNA 1 42 -79 380 282 98 41 chr3 18625993 18626238 -199410920 + L2 LINE L2 3003 3261 -52 201 312 39 13 chr3 18627068 18627145 -199410013 + L2 LINE L2 3227 3305 -8 363 302 76 6 chr3 18627262 18627434 -199409724 + MIR SINE MIR 21 204 -58 887 252 73 3 chr3 18628278 18628564 -199408594 + L1ME LINE L1 5479 5784 -380 686 144 38 8 chr3 18628590 18628736 -199408422 - L1MD3 LINE L1 0 7995 7632 701 232 61 77 chr3 18628739 18629293 -199407865 + MER51A LTR ERV1 1 640 0 210 296 102 71 chr3 18629717 18629815 -199407343 + L3 LINE CR1 1472 1572 -5 1308 225 65 8 chr3 18630061 18630417 -199406741 - MLT1B-int LTR MaLR -989 382 7 280 205 0 71 chr3 18630439 18630551 -199406607 - MLT1B LTR MaLR -15 375 272 495 261 28 17 chr3 18630959 18631139 -199406019 + HAL1 LINE L1 1621 1802 -705 960 81 0 0 chr3 18631264 18631387 -199405771 + AluY SINE Alu 1 123 -188 195 42 0 0 chr3 18631406 18631430 -199405728 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 886 177 0 6 chr3 18632390 18632565 -199404593 - L1MC/D LINE L1 -623 5619 5446 * 1021 248 18 0 chr3 18632563 18632841 -199404317 + L1MC/D LINE L1 4654 4936 -1210 737 224 125 11 chr3 18632898 18633162 -199403996 + L1MC/D LINE L1 5032 5325 -821 867 212 12 0 chr3 18633167 18633337 -199403821 + FRAM SINE Alu 1 172 -4 372 104 26 26 chr3 18633345 18633422 -199403736 + GA-rich Low_complexity Low_complexity 3 79 0 1360 213 9 14 chr3 18633435 18633782 -199403376 + L1MC/D LINE L1 5363 5707 -535 24 0 0 0 chr3 18633786 18633810 -199403348 + AT_rich Low_complexity Low_complexity 1 24 0 1060 105 0 0 chr3 18633918 18634061 -199403097 + AluSc SINE Alu 138 280 -29 2365 89 0 6 chr3 18634097 18634412 -199402746 + AluSq SINE Alu 1 313 0 259 362 7 13 chr3 18634946 18635098 -199402060 + LTR33 LTR ERVL 1 151 -370 2117 183 13 15 chr3 18636642 18637101 -199400057 + L1M2 LINE L1 4877 5334 -812 2324 164 11 19 chr3 18637118 18637591 -199399567 + L1M2 LINE L1 5301 5771 -520 1391 101 0 0 chr3 18637606 18637794 -199399364 + AluSg SINE Alu 1 188 -122 2531 52 0 3 chr3 18638241 18638551 -199398607 - AluY SINE Alu -2 309 1 46 45 0 0 chr3 18639778 18639845 -199397313 + AT_rich Low_complexity Low_complexity 1 67 0 886 108 8 0 chr3 18640977 18641107 -199396051 + L1PA16 LINE L1 6027 6157 -9 4259 142 36 26 chr3 18641110 18641970 -199395188 - L1MA8 LINE L1 -150 6141 5273 2389 83 0 6 chr3 18644546 18644859 -199392299 + AluY SINE Alu 1 311 0 940 219 92 15 chr3 18646333 18646658 -199390500 - L1ME2 LINE L1 -8 6156 5807 390 264 71 76 chr3 18646672 18646869 -199390289 + L1MC3 LINE L1 7100 7470 -525 861 271 50 85 chr3 18647035 18647518 -199389640 + MLT1K LTR MaLR 123 588 0 1673 167 37 14 chr3 18647701 18648055 -199389103 - L1MA4 LINE L1 0 6300 5939 269 334 141 10 chr3 18648276 18648485 -199388673 - MIR SINE MIR -14 248 18 272 154 0 0 chr3 18649069 18649121 -199388037 - HAL1 LINE L1 -142 2365 2314 2280 100 3 0 chr3 18649122 18649422 -199387736 - AluSq SINE Alu -12 301 1 276 30 0 0 chr3 18649552 18649585 -199387573 + (TG)n Simple_repeat Simple_repeat 2 34 0 815 216 0 0 chr3 18649586 18649734 -199387424 - FRAM SINE Alu -29 147 1 212 0 0 35 chr3 18649734 18649763 -199387395 + (TG)n Simple_repeat Simple_repeat 1 28 0 1062 209 0 0 chr3 18649869 18650065 -199387093 + Tigger7 DNA MER2_type 17 212 -2275 294 125 0 0 chr3 18651263 18651311 -199385847 + (CA)n Simple_repeat Simple_repeat 2 49 0 545 291 39 24 chr3 18652071 18652404 -199384754 - L1MEd LINE L1 -4862 1257 920 298 298 114 32 chr3 18652703 18652861 -199384297 - L2 LINE L2 0 3272 3102 228 35 0 0 chr3 18653128 18653157 -199384001 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 289 311 58 18 chr3 18653230 18653455 -199383703 + L1M4 LINE L1 3897 4130 -2016 3247 221 17 31 chr3 18653597 18654292 -199382866 - L1MC2 LINE L1 -282 6062 5381 2598 90 22 3 chr3 18654292 18654658 -199382500 - THE1C LTR MaLR -2 373 1 3247 221 17 31 chr3 18654658 18655050 -199382108 - L1MC2 LINE L1 -963 5381 4985 647 367 78 35 chr3 18655351 18656481 -199380677 + L2 LINE L2 989 2167 -1147 325 237 0 40 chr3 18656568 18656644 -199380514 + MER45A DNA AcHobo 5 77 -101 1444 146 23 0 chr3 18656698 18656958 -199380200 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr3 18656959 18657027 -199380131 + MER45A DNA AcHobo 100 168 -10 247 214 38 0 chr3 18657237 18657368 -199379790 + (TA)n Simple_repeat Simple_repeat 2 137 0 662 318 34 0 chr3 18657560 18657796 -199379362 + MIR SINE MIR 19 262 0 234 0 0 0 chr3 18657825 18657851 -199379307 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1261 233 64 22 chr3 18658651 18659059 -199378099 + MLT1C LTR MaLR 42 466 -1 1312 251 19 6 chr3 18659060 18659422 -199377736 + MLT1C-int LTR MaLR 1 367 -1004 236 204 0 0 chr3 18660030 18660079 -199377079 + T-rich Low_complexity Low_complexity 1 49 0 2486 118 8 5 chr3 18660571 18660945 -199376213 - THE1C LTR MaLR 0 375 1 21 26 0 26 chr3 18662277 18662303 -199374855 + AT_rich Low_complexity Low_complexity 1 26 -12 4802 92 20 28 chr3 18662303 18662486 -199374672 - L1PB1 LINE L1 -2 6149 5966 3636 107 99 33 chr3 18662486 18662536 -199374622 + LTR12 LTR ERV1 1 46 -642 2395 76 3 0 chr3 18662536 18662838 -199374320 - AluY SINE Alu -8 303 1 3636 107 99 33 chr3 18662838 18663432 -199373726 + LTR12 LTR ERV1 46 688 0 4802 92 20 28 chr3 18663432 18663607 -199373551 - L1PB1 LINE L1 -185 5966 5791 1600 100 4 9 chr3 18663607 18663837 -199373321 - AluY SINE Alu -16 295 67 4802 92 20 28 chr3 18663837 18663855 -199373303 - L1PB1 LINE L1 -360 5791 5774 351 0 0 0 chr3 18663855 18663894 -199373264 + (TG)n Simple_repeat Simple_repeat 2 40 0 4802 92 20 28 chr3 18663894 18664254 -199372904 - L1PB1 LINE L1 -377 5774 5417 21 26 0 26 chr3 18664254 18664266 -199372892 + AT_rich Low_complexity Low_complexity 26 38 0 270 0 0 0 chr3 18664373 18664403 -199372755 + (CA)n Simple_repeat Simple_repeat 1 30 0 2774 16 0 0 chr3 18665871 18666175 -199370983 - AluYa5 SINE Alu -7 304 1 279 0 0 0 chr3 18666204 18666235 -199370923 + (A)n Simple_repeat Simple_repeat 1 31 0 1422 165 0 0 chr3 18666518 18666736 -199370422 - AluJo SINE Alu -14 298 81 220 380 10 10 chr3 18667043 18667143 -199370015 + L2 LINE L2 2642 2741 -573 238 302 10 21 chr3 18667201 18667297 -199369861 - L2 LINE L2 -1 3271 3177 1159 248 26 0 chr3 18668217 18668528 -199368630 - L1MB7 LINE L1 -456 5722 5404 1550 195 25 42 chr3 18668532 18668963 -199368195 + L1MB7 LINE L1 5752 6175 -9 21 57 0 0 chr3 18671490 18671525 -199365633 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 18671591 18671620 -199365538 + AT_rich Low_complexity Low_complexity 1 29 0 220 226 75 0 chr3 18672982 18673035 -199364123 + MIR SINE MIR 90 146 -116 2123 105 7 3 chr3 18675765 18676051 -199361107 + AluSp SINE Alu 1 287 -26 25 51 0 0 chr3 18676051 18676090 -199361068 + AT_rich Low_complexity Low_complexity 1 39 0 2184 131 0 10 chr3 18676793 18677106 -199360052 + AluSx SINE Alu 1 310 -2 523 173 273 13 chr3 18677124 18677274 -199359884 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr3 18677746 18677774 -199359384 + AT_rich Low_complexity Low_complexity 1 28 0 361 268 160 11 chr3 18677901 18678284 -199358874 + L1ME4a LINE L1 5678 6115 -6 21 36 0 0 chr3 18678376 18678404 -199358754 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 18678813 18678835 -199358323 + AT_rich Low_complexity Low_complexity 1 22 0 2875 7 0 0 chr3 18678841 18679151 -199358007 + AluYa5 SINE Alu 1 310 -1 207 0 0 0 chr3 18679226 18679249 -199357909 + (CA)n Simple_repeat Simple_repeat 2 24 0 1981 152 7 0 chr3 18679650 18679953 -199357205 - AluJb SINE Alu -3 309 5 399 252 65 9 chr3 18679979 18680086 -199357072 - L2 LINE L2 -4 3309 3197 38 22 0 0 chr3 18680517 18680562 -199356596 + AT_rich Low_complexity Low_complexity 1 45 0 1234 171 39 12 chr3 18683099 18683356 -199353802 + L1MB5 LINE L1 5911 6174 0 291 283 42 17 chr3 18683765 18683885 -199353273 + MER5C DNA MER1_type 2 124 -200 2256 107 0 13 chr3 18684027 18684325 -199352833 - AluSx SINE Alu -18 294 1 235 346 12 0 chr3 18684355 18684436 -199352722 - L2 LINE L2 -38 3234 3153 602 288 96 5 chr3 18684468 18684687 -199352471 + L3 LINE CR1 1335 1573 -4 215 136 0 153 chr3 18685489 18685548 -199351610 + L2 LINE L2 3264 3313 0 180 176 0 0 chr3 18685835 18685869 -199351289 + CT-rich Low_complexity Low_complexity 4 37 0 227 344 0 24 chr3 18685895 18686020 -199351138 + CT-rich Low_complexity Low_complexity 1 122 0 327 256 26 0 chr3 18686429 18686507 -199350651 + L2 LINE L2 3223 3302 -11 181 228 18 70 chr3 18686459 18686516 -199350642 + MIR SINE MIR 209 262 0 * 617 242 169 29 chr3 18686785 18686884 -199350274 - MIR SINE MIR -2 260 176 2179 149 0 20 chr3 18686884 18687227 -199349931 - MER1B DNA MER1_type 0 337 2 617 242 169 29 chr3 18687227 18687363 -199349795 - MIR SINE MIR -86 176 1 2556 40 0 7 chr3 18687639 18687942 -199349216 + AluY SINE Alu 1 301 -10 207 341 102 21 chr3 18688663 18688907 -199348251 - L2 LINE L2 -1005 2309 2031 1762 164 73 0 chr3 18688907 18689194 -199347964 + AluJb SINE Alu 1 308 -4 207 341 102 21 chr3 18689194 18689274 -199347884 - L2 LINE L2 -1283 2031 1959 559 193 146 10 chr3 18689295 18689487 -199347671 - MER63 DNA MER1_type -37 1023 806 1577 178 7 43 chr3 18689631 18689935 -199347223 - AluJb SINE Alu -15 297 5 2421 85 0 0 chr3 18689958 18690265 -199346893 - AluYa5 SINE Alu -4 307 1 297 0 0 0 chr3 18690295 18690328 -199346830 + (A)n Simple_repeat Simple_repeat 1 33 0 1945 121 0 0 chr3 18690609 18690873 -199346285 - AluJo SINE Alu -14 298 35 2520 219 73 55 chr3 18692733 18692877 -199344281 + L1MC4a LINE L1 6629 6769 -1039 1325 184 4 0 chr3 18692877 18693111 -199344047 + MER46A DNA MER2_type 1 235 -1 2520 219 73 55 chr3 18693111 18693498 -199343660 + L1MC4a LINE L1 6769 7148 -660 2106 120 11 0 chr3 18693498 18693782 -199343376 + AluSq SINE Alu 1 287 -26 252 0 0 0 chr3 18693782 18693810 -199343348 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2520 219 73 55 chr3 18693810 18694331 -199342827 + L1MC4a LINE L1 7148 7676 -132 3275 130 47 0 chr3 18694331 18694883 -199342275 - L1MA5 LINE L1 -2 6298 5721 2520 219 73 55 chr3 18694883 18695011 -199342147 + L1MC4a LINE L1 7676 7800 -8 1209 113 79 29 chr3 18695876 18696116 -199341042 + L1MB3 LINE L1 5930 6181 -2 1641 183 0 0 chr3 18697472 18697740 -199339418 - AluJo SINE Alu -7 305 38 21 71 0 0 chr3 18697948 18697990 -199339168 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr3 18698420 18698456 -199338702 + AT_rich Low_complexity Low_complexity 1 36 0 219 292 62 0 chr3 18699445 18699510 -199337648 - MIR SINE MIR -110 152 84 291 157 0 0 chr3 18699708 18699759 -199337399 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1769 153 13 16 chr3 18700097 18700404 -199336754 + AluJb SINE Alu 1 306 -6 185 325 157 0 chr3 18701338 18701421 -199335737 + L2 LINE L2 3198 3293 -20 204 302 222 28 chr3 18701825 18702113 -199335045 - L2 LINE L2 -2 3311 2968 1789 168 0 14 chr3 18702291 18702609 -199334549 - AluJo SINE Alu 0 314 1 485 335 33 9 chr3 18702985 18703197 -199333961 - MIR SINE MIR -9 253 37 2024 130 0 0 chr3 18703524 18703800 -199333358 + AluSx SINE Alu 25 300 -12 301 267 10 69 chr3 18704016 18704117 -199333041 + MIR3 SINE MIR 86 180 -28 398 288 51 8 chr3 18704346 18704464 -199332694 + L2 LINE L2 3190 3312 -1 2126 93 3 56 chr3 18704511 18704646 -199332512 + AluSx SINE Alu 4 145 -167 2134 111 7 0 chr3 18704646 18704945 -199332213 + AluSq SINE Alu 3 303 0 2126 93 3 56 chr3 18704945 18705129 -199332029 + AluSx SINE Alu 145 307 -5 1065 246 64 25 chr3 18706327 18706734 -199330424 - HAL1 LINE L1 -426 2081 1659 292 275 0 2 chr3 18706766 18706867 -199330291 - L1MC4 LINE L1 0 8042 7896 261 0 0 0 chr3 18706887 18706916 -199330242 + (CA)n Simple_repeat Simple_repeat 2 30 0 1256 237 101 46 chr3 18706975 18707600 -199329558 - L1MC4 LINE L1 -294 7748 7090 849 160 0 18 chr3 18707600 18707832 -199329326 + (TCCA)n Simple_repeat Simple_repeat 1 227 0 1077 294 138 53 chr3 18707867 18709064 -199328094 - HAL1 LINE L1 -1206 1301 4 196 344 16 0 chr3 18709529 18709590 -199327568 - L2 LINE L2 -1 3312 3251 271 199 69 20 chr3 18710366 18710467 -199326691 + L1ME LINE L1 5490 5590 -574 270 314 37 0 chr3 18710477 18710630 -199326528 + L1ME4a LINE L1 5415 5582 -584 391 282 110 29 chr3 18710658 18710967 -199326191 - HAL1b LINE L1 -770 578 245 2427 77 0 0 chr3 18712682 18712982 -199324176 - AluY SINE Alu -11 300 1 216 0 0 0 chr3 18713225 18713249 -199323909 + (A)n Simple_repeat Simple_repeat 1 24 0 713 208 8 0 chr3 18713255 18713385 -199323773 + FLAM_A SINE Alu 1 131 -2 1281 170 0 4 chr3 18713387 18713634 -199323524 + L1MA7 LINE L1 3516 3761 -2385 438 76 0 45 chr3 18713634 18713700 -199323458 + Alu SINE Alu 234 296 -14 7014 158 44 4 chr3 18713700 18715680 -199321478 + L1MA7 LINE L1 3919 5980 -311 2372 124 22 10 chr3 18715680 18716082 -199321076 + L1PA16 LINE L1 5752 6158 -8 27 29 0 0 chr3 18716373 18716407 -199320751 + AT_rich Low_complexity Low_complexity 1 34 0 1755 108 32 25 chr3 18716411 18716727 -199320431 + L1MA7 LINE L1 5974 6291 0 24 0 0 0 chr3 18716761 18716785 -199320373 + AT_rich Low_complexity Low_complexity 1 24 0 596 297 43 9 chr3 18716831 18717158 -199320000 + L1ME4a LINE L1 5556 5893 -228 334 226 37 55 chr3 18717178 18717290 -199319868 + L1ME4a LINE L1 5950 6060 -61 2594 62 0 0 chr3 18717290 18717598 -199319560 + AluY SINE Alu 1 308 -3 334 226 37 55 chr3 18717598 18717649 -199319509 + L1ME4a LINE L1 6060 6110 -11 390 377 16 21 chr3 18717791 18717982 -199319176 + L2 LINE L2 2782 2971 -343 651 178 30 11 chr3 18719733 18719999 -199317159 - L1MA9 LINE L1 -22 6290 5924 679 167 40 0 chr3 18719999 18720100 -199317058 - MSTA LTR MaLR 0 428 323 902 69 21 35 chr3 18720100 18720245 -199316913 + MER30 DNA MER1_type 1 143 -87 279 0 0 0 chr3 18720245 18720276 -199316882 + (TG)n Simple_repeat Simple_repeat 2 32 0 2550 72 56 8 chr3 18720679 18721022 -199316136 - L1PB1 LINE L1 -2 6149 5824 411 21 0 0 chr3 18721022 18721070 -199316088 + (TG)n Simple_repeat Simple_repeat 2 49 0 270 0 0 0 chr3 18721069 18721099 -199316059 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 2550 72 56 8 chr3 18721070 18721130 -199316028 - L1PB1 LINE L1 -327 5824 5757 1453 136 6 71 chr3 18721130 18721271 -199315887 - L1PB1 LINE L1 -687 5464 5315 2385 74 0 7 chr3 18721271 18721568 -199315590 - AluSc SINE Alu -14 295 1 1453 136 6 71 chr3 18721568 18721924 -199315234 - L1PB1 LINE L1 -836 5315 4987 797 96 0 0 chr3 18721925 18722029 -199315129 + MER30 DNA MER1_type 127 230 0 607 121 174 23 chr3 18722029 18722160 -199314998 - MSTA LTR MaLR -93 335 185 1047 97 143 0 chr3 18723277 18723452 -199313706 - MSTA LTR MaLR -228 200 1 852 121 0 0 chr3 18723455 18723587 -199313571 - L1MA9 LINE L1 -387 5925 5794 180 0 0 0 chr3 18723587 18723607 -199313551 + (TATG)n Simple_repeat Simple_repeat 3 22 0 1851 151 3 18 chr3 18723608 18723946 -199313212 + L1M2 LINE L1 5451 5783 -529 2078 116 0 10 chr3 18724296 18724588 -199312570 - AluSq SINE Alu -24 289 1 22 0 0 0 chr3 18724589 18724611 -199312547 + AT_rich Low_complexity Low_complexity 1 22 0 2872 176 9 18 chr3 18724621 18725190 -199311968 + L1MB7 LINE L1 5621 6184 0 1740 206 48 7 chr3 18725201 18725720 -199311438 + L1MC3 LINE L1 7301 7908 -87 554 235 72 7 chr3 18725722 18725875 -199311283 + MIR SINE MIR 100 262 0 2521 47 0 3 chr3 18726228 18726529 -199310629 + AluY SINE Alu 1 300 -11 756 140 58 23 chr3 18726595 18726766 -199310392 - MER53 DNA DNA -12 177 1 2023 127 7 0 chr3 18726797 18727080 -199310078 + AluSx SINE Alu 7 291 -21 1749 121 36 78 chr3 18727139 18727445 -199309713 + AluJb SINE Alu 1 293 -19 270 217 33 0 chr3 18728050 18728110 -199309048 + GA-rich Low_complexity Low_complexity 4 65 0 771 107 8 8 chr3 18728219 18728341 -199308817 - L1MA1 LINE L1 0 6302 6181 360 0 0 0 chr3 18728384 18728424 -199308734 + (TC)n Simple_repeat Simple_repeat 1 40 0 233 313 0 0 chr3 18729289 18729337 -199307821 + L2 LINE L2 3231 3278 -35 2251 90 0 53 chr3 18729480 18729802 -199307356 + AluSx SINE Alu 1 305 -7 33 56 0 0 chr3 18733123 18733177 -199303981 + AT_rich Low_complexity Low_complexity 1 54 0 311 164 74 57 chr3 18733437 18733559 -199303599 - L1ME4a LINE L1 -1 6120 5997 2055 86 0 4 chr3 18733608 18733863 -199303295 - AluSc SINE Alu -12 297 44 1698 110 0 13 chr3 18733862 18734098 -199303060 - AluSp SINE Alu -80 233 1 * 200 59 29 0 chr3 18734134 18734168 -199302990 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2323 113 7 0 chr3 18734216 18734526 -199302632 - AluSx SINE Alu 0 312 1 182 196 52 113 chr3 18735431 18735528 -199301630 + L2 LINE L2 3173 3263 -9 22 35 0 0 chr3 18735828 18735857 -199301301 + AT_rich Low_complexity Low_complexity 1 29 0 2367 74 0 0 chr3 18736333 18736632 -199300526 - AluY SINE Alu -12 299 1 583 235 109 80 chr3 18736705 18736943 -199300215 + MIR SINE MIR 8 252 -10 243 0 0 0 chr3 18737407 18737434 -199299724 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1768 152 22 4 chr3 18737487 18737757 -199299401 - AluJo SINE Alu -35 277 3 490 292 88 95 chr3 18737775 18738049 -199299109 + L2 LINE L2 2987 3258 -14 2359 91 3 0 chr3 18738752 18739050 -199298108 + AluSq SINE Alu 1 299 -14 853 113 0 0 chr3 18739232 18739347 -199297811 - Alu SINE Alu -11 299 185 2274 106 0 0 chr3 18739558 18739861 -199297297 - AluSc SINE Alu -6 303 1 246 224 20 0 chr3 18739993 18740042 -199297116 - L2 LINE L2 0 3313 3264 225 269 77 0 chr3 18740008 18740060 -199297098 - MIR SINE MIR -10 252 197 * 1498 157 94 31 chr3 18740633 18741060 -199296098 + AluJo SINE Alu 1 445 0 331 350 209 6 chr3 18741084 18741247 -199295911 - MER91A DNA MER1_type 0 196 1 2049 136 30 104 chr3 18741357 18741455 -199295703 - L1MB7 LINE L1 -3 6181 6077 2315 94 3 3 chr3 18741455 18741762 -199295396 + AluSp SINE Alu 1 307 -6 2049 136 30 104 chr3 18741762 18741975 -199295183 - L1MB7 LINE L1 -107 6077 5926 2168 103 0 3 chr3 18741975 18742267 -199294891 - AluSg SINE Alu -11 299 9 2049 136 30 104 chr3 18742267 18742520 -199294638 - L1MB7 LINE L1 -258 5926 5656 201 230 0 0 chr3 18742588 18742662 -199294496 + T-rich Low_complexity Low_complexity 1 74 0 2436 75 3 3 chr3 18743849 18744154 -199293004 - AluSp SINE Alu -8 305 1 23 0 0 0 chr3 18744156 18744179 -199292979 + AT_rich Low_complexity Low_complexity 1 23 0 1466 101 3 221 chr3 18744179 18744546 -199292612 - AluSx SINE Alu -14 288 2 562 231 41 103 chr3 18744588 18744831 -199292327 - L2 LINE L2 -3 3310 3083 321 358 33 40 chr3 18744902 18745053 -199292105 - L2 LINE L2 -2 3270 3121 382 214 97 13 chr3 18745633 18745787 -199291371 + L1MC5 LINE L1 7734 7900 -61 224 236 0 0 chr3 18746313 18746368 -199290790 + (TA)n Simple_repeat Simple_repeat 1 55 0 516 72 0 0 chr3 18746368 18746437 -199290721 + (TG)n Simple_repeat Simple_repeat 2 70 0 537 153 0 0 chr3 18746440 18746525 -199290633 - FRAM SINE Alu -25 151 67 413 188 62 31 chr3 18746532 18746628 -199290530 - MIR SINE MIR -108 154 56 490 229 55 37 chr3 18747219 18747437 -199289721 - AluSq SINE Alu -1 312 91 2046 103 50 17 chr3 18747555 18747857 -199289301 - AluSx SINE Alu 0 312 1 428 248 40 10 chr3 18749025 18749126 -199288032 + L2 LINE L2 3169 3272 0 449 220 104 54 chr3 18749145 18749386 -199287772 + MER112 DNA MER1_type 1 253 -3 3953 164 65 44 chr3 18749596 18749823 -199287335 + L1MB7 LINE L1 4941 5162 -1022 734 195 0 0 chr3 18749823 18749979 -199287179 + FLAM_A SINE Alu 2 157 0 3953 164 65 44 chr3 18749979 18750233 -199286925 + L1MB7 LINE L1 5162 5409 -775 1466 143 5 5 chr3 18750233 18750456 -199286702 + AluJo SINE Alu 81 303 -9 3953 164 65 44 chr3 18750456 18751111 -199286047 + L1MB7 LINE L1 5409 6107 -77 2105 106 31 3 chr3 18751111 18751403 -199285755 - AluSx SINE Alu -12 300 1 3953 164 65 44 chr3 18751403 18751483 -199285675 + L1MB7 LINE L1 6107 6184 0 1813 154 0 46 chr3 18751486 18751811 -199285347 + AluJb SINE Alu 1 310 -2 32 75 0 0 chr3 18752914 18752981 -199284177 + GC_rich Low_complexity Low_complexity 1 67 0 663 196 15 8 chr3 18803937 18804070 -199233088 - MER94 DNA DNA 0 134 1 289 325 74 48 chr3 18804675 18804906 -199232252 + L3b LINE CR1 1150 1386 -197 375 294 29 77 chr3 18805498 18805668 -199231490 - MIR3 SINE MIR -6 202 41 1280 194 94 7 chr3 18805698 18806007 -199231151 - MER2 DNA MER2_type -6 339 4 248 288 25 12 chr3 18806276 18806356 -199230802 + MIR SINE MIR 46 126 -82 213 231 115 0 chr3 18807185 18807237 -199229921 - MIR SINE MIR -101 107 50 204 321 33 60 chr3 18807445 18807629 -199229529 - L2 LINE L2 -236 3036 2858 953 317 71 14 chr3 18807674 18808192 -199228966 - L2 LINE L2 -576 2738 2191 1908 143 10 10 chr3 18808902 18809196 -199227962 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 18809298 18809321 -199227837 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 473 295 118 13 chr3 18809368 18809570 -199227588 - MIR SINE MIR -25 237 19 664 162 0 0 chr3 18809617 18809728 -199227430 - AluJb SINE Alu -11 301 191 2174 128 0 6 chr3 18810374 18810686 -199226472 - AluSx SINE Alu -2 310 1 248 233 200 33 chr3 18810717 18810837 -199226321 + MIR SINE MIR 72 211 -51 1242 225 24 30 chr3 18811215 18811548 -199225610 + L1MB7 LINE L1 5853 6183 -1 462 292 12 24 chr3 18811660 18811821 -199225337 + MIR3 SINE MIR 21 180 -28 21 0 0 0 chr3 18812464 18812485 -199224673 + AT_rich Low_complexity Low_complexity 1 21 0 2373 89 0 0 chr3 18812957 18813250 -199223908 + AluSg SINE Alu 1 293 -17 682 235 60 125 chr3 18813466 18813581 -199223577 + L1MC4 LINE L1 7030 7151 -891 2064 141 0 3 chr3 18813581 18813878 -199223280 + AluJb SINE Alu 3 298 -14 682 235 60 125 chr3 18813878 18814526 -199222632 + L1MC4 LINE L1 7151 7737 -305 257 279 108 13 chr3 18814679 18814837 -199222321 + L1ME4a LINE L1 5938 6110 -11 361 175 278 0 chr3 18815483 18815580 -199221578 + MIR SINE MIR 51 174 -88 339 278 40 53 chr3 18815854 18815915 -199221243 + MIR SINE MIR 103 163 -99 2139 134 0 0 chr3 18815915 18816214 -199220944 - AluSx SINE Alu -13 299 1 339 278 40 53 chr3 18816214 18816303 -199220855 + MIR SINE MIR 163 251 -11 550 257 7 29 chr3 18817592 18817732 -199219426 + MIR3 SINE MIR 30 166 -42 323 273 114 114 chr3 18818455 18818631 -199218527 - MIR3 SINE MIR -17 191 16 1890 156 0 7 chr3 18818695 18818990 -199218168 - AluJo SINE Alu -18 294 2 23 54 0 0 chr3 18819003 18819040 -199218118 + AT_rich Low_complexity Low_complexity 1 37 0 811 134 0 31 chr3 18819126 18819253 -199217905 + AluSg/x SINE Alu 169 291 -19 656 171 0 0 chr3 18819259 18819370 -199217788 + FLAM_A SINE Alu 1 111 -31 27 0 0 0 chr3 18819373 18819400 -199217758 + AT_rich Low_complexity Low_complexity 1 27 0 260 327 84 9 chr3 18821200 18821307 -199215851 + L2 LINE L2 3196 3310 -3 204 128 77 0 chr3 18821559 18821598 -199215560 - MIR SINE MIR -5 257 216 * 225 81 81 0 chr3 18821564 18821601 -199215557 - L2 LINE L2 -16 3256 3217 325 326 0 0 chr3 18821644 18821733 -199215425 + L2 LINE L2 3184 3272 0 224 348 77 39 chr3 18824164 18824319 -199212839 + L2 LINE L2 3080 3240 -32 229 317 0 0 chr3 18824330 18824390 -199212768 - MIR3 SINE MIR -33 175 116 308 284 123 0 chr3 18826275 18826421 -199210737 + MIR SINE MIR 41 203 -59 2364 79 0 29 chr3 18826519 18826835 -199210323 + AluY SINE Alu 1 307 -4 1865 158 0 10 chr3 18827191 18827489 -199209669 - AluJb SINE Alu -17 295 1 267 360 87 26 chr3 18828765 18829018 -199208140 + L2 LINE L2 2791 3057 -215 919 279 82 47 chr3 18829043 18829806 -199207352 + L2 LINE L2 2520 3313 0 997 209 61 15 chr3 18830494 18830778 -199206380 - MER93a LTR ERV1 -60 342 1 256 224 122 31 chr3 18830795 18830893 -199206265 - MARNA DNA Mariner -236 350 244 2240 103 3 0 chr3 18831354 18831656 -199205502 - AluSx SINE Alu -9 303 1 267 360 87 26 chr3 18832932 18833185 -199203973 + L2 LINE L2 2791 3057 -215 919 279 82 47 chr3 18833210 18833973 -199203185 + L2 LINE L2 2520 3313 0 186 326 31 71 chr3 18835187 18835285 -199201873 + L2 LINE L2 2990 3083 -189 2056 134 10 0 chr3 18835886 18836192 -199200966 - AluSx SINE Alu -3 309 1 770 157 8 15 chr3 18836397 18836531 -199200627 - FLAM_C SINE Alu -10 133 1 426 167 152 80 chr3 18836704 18836842 -199200316 - L1ME3A LINE L1 -3 6167 6020 3538 249 81 24 chr3 18836843 18838457 -199198701 - L1ME3A LINE L1 -193 5977 4457 1940 140 0 7 chr3 18838457 18838777 -199198381 + AluSx SINE Alu 2 319 0 3538 249 81 24 chr3 18838777 18839000 -199198158 - L1ME3A LINE L1 -1713 4457 4248 186 43 0 0 chr3 18839000 18839023 -199198135 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3538 249 81 24 chr3 18839023 18839129 -199198029 - L1ME3A LINE L1 -1922 4248 3916 1574 162 66 11 chr3 18839153 18839425 -199197733 - AluJb SINE Alu -25 287 1 1620 134 0 8 chr3 18839860 18840133 -199197025 + AluSx SINE Alu 49 319 0 812 227 68 65 chr3 18840155 18840356 -199196802 - L1M4 LINE L1 -1922 4224 4020 186 43 0 0 chr3 18840356 18840379 -199196779 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 812 227 68 65 chr3 18840379 18840485 -199196673 - L1M4 LINE L1 -2126 4020 3916 1574 162 66 11 chr3 18840509 18840781 -199196377 - AluJb SINE Alu -25 287 1 7540 197 37 20 chr3 18841444 18842510 -199194648 - L1MC1 LINE L1 0 6333 5287 2165 138 15 6 chr3 18842510 18842844 -199194314 - MER1B DNA MER1_type 0 337 1 7540 197 37 20 chr3 18842844 18843138 -199194020 - L1MC1 LINE L1 -1046 5287 4999 240 35 0 0 chr3 18843138 18843167 -199193991 + (TTA)n Simple_repeat Simple_repeat 3 31 0 7540 197 37 20 chr3 18843167 18844798 -199192360 - L1MC1 LINE L1 -1334 4999 3287 1622 169 0 83 chr3 18845128 18845442 -199191716 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr3 18845448 18845475 -199191683 + AT_rich Low_complexity Low_complexity 1 27 0 2369 103 0 0 chr3 18845732 18846044 -199191114 - AluSx SINE Alu 0 312 1 314 314 16 16 chr3 18846109 18846230 -199190928 + MIR SINE MIR 56 176 -86 2388 201 108 58 chr3 18846686 18846772 -199190386 - HAL1 LINE L1 -109 2398 2318 1818 171 0 0 chr3 18846772 18847059 -199190099 + AluJb SINE Alu 1 287 -25 2388 201 108 58 chr3 18847059 18847896 -199189262 - HAL1 LINE L1 -189 2318 1429 189 353 0 69 chr3 18847992 18848094 -199189064 + L3b LINE CR1 1203 1297 -286 417 223 69 39 chr3 18848185 18848315 -199188843 - MER103 DNA DNA -25 141 8 345 276 154 16 chr3 18848405 18848528 -199188630 + L3b LINE CR1 1375 1514 -69 532 267 68 0 chr3 18848658 18848804 -199188354 - MIR SINE MIR 0 262 107 348 260 142 47 chr3 18849261 18849430 -199187728 + MIR3 SINE MIR 17 201 -7 188 205 26 0 chr3 18849766 18849805 -199187353 + L2 LINE L2 3265 3304 -9 724 308 19 35 chr3 18849866 18850126 -199187032 + MIR SINE MIR 2 257 -5 282 335 89 63 chr3 18851235 18851551 -199185607 - L2 LINE L2 -48 3224 2901 1544 154 16 87 chr3 18851759 18851879 -199185279 + L1MC2 LINE L1 5989 6116 -228 2211 114 7 0 chr3 18851879 18852186 -199184972 + AluSx SINE Alu 1 309 -3 1544 154 16 87 chr3 18852186 18852435 -199184723 + L1MC2 LINE L1 6116 6332 -12 21 0 0 0 chr3 18852520 18852541 -199184617 + AT_rich Low_complexity Low_complexity 1 21 0 704 187 0 0 chr3 18852667 18852790 -199184368 + FLAM_C SINE Alu 1 123 -20 225 0 0 0 chr3 18852808 18852833 -199184325 + (GA)n Simple_repeat Simple_repeat 1 25 0 2283 103 3 0 chr3 18853511 18853811 -199183347 - AluSp SINE Alu -12 301 1 366 271 12 0 chr3 18854128 18854213 -199182945 + MIR SINE MIR 66 151 -111 337 307 0 0 chr3 18854352 18854440 -199182718 - L2 LINE L2 -4 3268 3181 220 194 32 16 chr3 18854815 18854877 -199182281 + T-rich Low_complexity Low_complexity 3 65 0 27 62 0 0 chr3 18855077 18855125 -199182033 + AT_rich Low_complexity Low_complexity 1 48 0 5445 110 30 93 chr3 18855315 18856525 -199180633 + L1MA9 LINE L1 5143 6263 -49 2228 102 6 10 chr3 18856554 18856867 -199180291 - AluSx SINE Alu 0 312 1 227 109 109 0 chr3 18856867 18856922 -199180236 + L1MA9 LINE L1 6252 6312 0 234 156 0 0 chr3 18857704 18857749 -199179409 + CT-rich Low_complexity Low_complexity 2 46 0 24 32 0 0 chr3 18858498 18858529 -199178629 + AT_rich Low_complexity Low_complexity 1 31 0 214 243 86 14 chr3 18858651 18858721 -199178437 - MIR SINE MIR -109 153 79 699 195 0 0 chr3 18859144 18859267 -199177891 - FRAM SINE Alu -16 160 38 275 298 129 32 chr3 18859349 18859473 -199177685 - MIR3 SINE MIR -38 170 35 249 33 0 0 chr3 18859476 18859506 -199177652 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 313 240 103 69 chr3 18859555 18859730 -199177428 - MIR SINE MIR -58 204 24 183 307 40 40 chr3 18860137 18860212 -199176946 - MIR SINE MIR -6 256 182 240 154 0 154 chr3 18860225 18860250 -199176908 + MIR3 SINE MIR 124 151 -57 1818 162 0 7 chr3 18860250 18860534 -199176624 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr3 18860537 18860568 -199176590 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 240 154 0 154 chr3 18860568 18860603 -199176555 + MIR3 SINE MIR 153 178 -30 198 307 53 0 chr3 18860719 18860794 -199176364 + MIR3 SINE MIR 121 199 -9 218 288 30 15 chr3 18862029 18862095 -199175063 - MIR SINE MIR -14 248 182 976 196 98 0 chr3 18862197 18862401 -199174757 + Charlie1 DNA MER1_type 1 224 -2537 654 187 0 0 chr3 18862402 18862525 -199174633 + Charlie1 DNA MER1_type 2625 2747 -14 768 160 102 16 chr3 18863984 18864171 -199172987 - LTR37B LTR ERV1 -55 413 211 6878 71 9 0 chr3 18864171 18865366 -199171792 - L1PA6 LINE L1 0 6154 4957 257 266 37 34 chr3 18866173 18866435 -199170723 + L1MEd LINE L1 788 1072 -5081 236 311 11 0 chr3 18866701 18866791 -199170367 + L1MEd LINE L1 1048 1138 -4981 343 277 122 5 chr3 18866841 18867029 -199170129 + HAL1 LINE L1 1365 1574 -933 1855 162 0 19 chr3 18867061 18867375 -199169783 + AluSx SINE Alu 1 308 -4 806 303 143 8 chr3 18867562 18868038 -199169120 + L1ME2 LINE L1 5412 5951 -213 1881 142 3 35 chr3 18868090 18868406 -199168752 - AluJb SINE Alu -6 306 1 234 235 39 0 chr3 18868533 18868584 -199168574 - MIR SINE MIR -59 149 97 816 271 58 96 chr3 18868616 18869180 -199167978 - L2 LINE L2 -46 3267 2253 501 273 97 30 chr3 18869841 18870006 -199167152 - MIR3 SINE MIR -17 191 16 198 0 0 0 chr3 18870646 18870668 -199166490 + (T)n Simple_repeat Simple_repeat 1 22 0 2201 128 0 0 chr3 18873564 18873869 -199163289 - AluSx SINE Alu -1 311 7 23 0 0 0 chr3 18873882 18873905 -199163253 + AT_rich Low_complexity Low_complexity 1 23 0 1941 164 0 3 chr3 18873928 18874233 -199162925 + AluJb SINE Alu 1 304 -8 337 223 287 0 chr3 18874354 18874448 -199162710 - FLAM_A SINE Alu -12 121 1 2362 68 0 0 chr3 18874832 18875160 -199161998 - AluY SINE Alu 0 328 1 1010 178 0 17 chr3 18876890 18877070 -199160088 + FRAM SINE Alu 1 176 0 433 152 11 11 chr3 18877072 18877164 -199159994 + GA-rich Low_complexity Low_complexity 4 95 0 1405 174 92 32 chr3 18877170 18877452 -199159706 + AluJo SINE Alu 1 299 -13 539 305 12 24 chr3 18878238 18878402 -199158756 - MIR3 SINE MIR -21 187 26 211 229 0 0 chr3 18878733 18878781 -199158377 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 259 288 0 0 chr3 18879587 18879646 -199157512 + L2 LINE L2 3250 3308 -5 186 301 184 7 chr3 18879884 18880020 -199157138 - L2 LINE L2 -5 3308 3149 1054 184 15 5 chr3 18880266 18880462 -199156696 + MER2 DNA MER2_type 1 198 -147 1205 121 0 0 chr3 18880462 18880628 -199156530 + AluJb SINE Alu 1 166 -146 652 137 0 0 chr3 18881007 18881136 -199156022 - AluJo SINE Alu 0 339 211 1182 196 0 10 chr3 18881195 18881399 -199155759 - AluJo SINE Alu -104 208 7 1360 156 0 26 chr3 18881536 18881767 -199155391 - AluJo SINE Alu -87 225 1 476 218 0 0 chr3 18881785 18881863 -199155295 + MER2 DNA MER2_type 268 345 0 375 272 107 0 chr3 18881969 18882072 -199155086 - L2 LINE L2 -27 3286 3173 2054 119 3 3 chr3 18882633 18882919 -199154239 + AluSx SINE Alu 1 286 -26 582 83 0 0 chr3 18882847 18882920 -199154238 + AluSg/x SINE Alu 213 306 0 190 0 0 0 chr3 18882920 18882941 -199154217 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 205 237 0 0 chr3 18883000 18883038 -199154120 - L2 LINE L2 -90 3182 3145 230 196 0 0 chr3 18883641 18883687 -199153471 - L2 LINE L2 -237 3035 2990 1625 105 0 0 chr3 18884644 18884873 -199152285 - AluSg/x SINE Alu -5 305 77 265 263 139 34 chr3 18885168 18885263 -199151895 + MIR3 SINE MIR 20 132 -76 2160 78 0 7 chr3 18885263 18885572 -199151586 - AluSc SINE Alu 0 307 1 265 263 139 34 chr3 18885572 18885619 -199151539 + MIR3 SINE MIR 132 173 -35 552 273 0 8 chr3 18886065 18886186 -199150972 - MIR SINE MIR -59 149 30 697 174 56 25 chr3 18886670 18886831 -199150327 - FRAM SINE Alu -1 175 10 185 348 87 26 chr3 18887153 18887268 -199149890 + L2 LINE L2 3150 3271 -1 231 293 191 20 chr3 18889717 18889864 -199147294 + MIR3 SINE MIR 37 208 0 452 236 51 67 chr3 18890763 18890941 -199146217 + MER69A DNA AcHobo 1 175 -2 2131 80 13 35 chr3 18891639 18891950 -199145208 + AluSq SINE Alu 1 304 -9 704 163 0 59 chr3 18892443 18892578 -199144580 + FLAM_C SINE Alu 1 127 -6 25 75 0 0 chr3 18892578 18892631 -199144527 + AT_rich Low_complexity Low_complexity 1 53 0 243 339 46 28 chr3 18893402 18893511 -199143647 - MIR SINE MIR -76 132 22 22 35 0 0 chr3 18894039 18894068 -199143090 + AT_rich Low_complexity Low_complexity 1 29 0 2014 139 3 0 chr3 18894209 18894518 -199142640 + AluSx SINE Alu 1 310 -2 214 137 0 39 chr3 18895519 18895570 -199141588 + (TTTTC)n Simple_repeat Simple_repeat 3 51 0 664 137 0 0 chr3 18895983 18896112 -199141046 - AluJo SINE Alu 0 339 211 1104 196 0 10 chr3 18896171 18896375 -199140783 - AluJo SINE Alu -104 208 7 951 273 70 0 chr3 18896665 18896907 -199140251 - MIR SINE MIR 0 262 4 2350 96 0 0 chr3 18897043 18897356 -199139802 - AluSq SINE Alu 0 313 1 1775 113 44 22 chr3 18897566 18897876 -199139282 - AluSg SINE Alu 0 318 3 45 34 0 0 chr3 18897902 18897961 -199139197 + AT_rich Low_complexity Low_complexity 1 59 0 216 278 0 0 chr3 18898180 18898234 -199138924 + (CATA)n Simple_repeat Simple_repeat 3 56 0 209 278 19 19 chr3 18900241 18900295 -199136863 + L2 LINE L2 3217 3270 -2 661 319 4 62 chr3 18900312 18900588 -199136570 - MIR SINE MIR 0 262 3 2066 140 0 6 chr3 18900709 18901023 -199136135 + AluJo SINE Alu 1 312 0 410 247 237 21 chr3 18902872 18903058 -199134100 + MIR SINE MIR 31 256 -6 225 276 0 52 chr3 18904671 18904787 -199132371 + A-rich Low_complexity Low_complexity 1 110 0 596 274 85 33 chr3 18904831 18905043 -199132115 - MIR SINE MIR -26 236 14 * 797 209 43 12 chr3 18905030 18905193 -199131965 + MER5B DNA MER1_type 11 178 0 300 303 52 42 chr3 18905667 18905826 -199131332 - MIR SINE MIR -69 193 21 304 300 62 23 chr3 18907007 18907137 -199130021 - MIR3 SINE MIR -10 198 64 661 182 23 15 chr3 18907547 18907679 -199129479 + FLAM_C SINE Alu 1 133 0 201 288 51 0 chr3 18908441 18908500 -199128658 - L2 LINE L2 -70 3202 3141 649 289 83 45 chr3 18908519 18908761 -199128397 + MIR SINE MIR 1 251 -11 277 348 16 71 chr3 18908855 18909108 -199128050 - L2 LINE L2 -218 3054 2816 532 286 177 38 chr3 18909313 18909769 -199127389 + L1M4 LINE L1 2809 3200 -2946 1708 165 25 0 chr3 18909769 18910054 -199127104 + AluJo SINE Alu 1 292 -20 532 286 177 38 chr3 18910054 18911033 -199126125 + L1M4 LINE L1 3200 4443 -1703 2202 115 0 0 chr3 18911367 18911679 -199125479 + AluSx SINE Alu 1 312 0 269 153 0 17 chr3 18912538 18912597 -199124561 + CT-rich Low_complexity Low_complexity 2 59 0 1256 185 80 0 chr3 18913001 18913277 -199123881 + AluJo SINE Alu 2 299 -13 1297 84 90 0 chr3 18913855 18913998 -199123160 + MER107 DNA MER1_type 3 166 -31 195 42 0 0 chr3 18913998 18914022 -199123136 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1297 84 90 0 chr3 18914022 18914056 -199123102 + MER107 DNA MER1_type 166 196 -1 180 304 128 20 chr3 18915970 18916072 -199121086 - L2 LINE L2 -18 3254 3142 222 346 77 0 chr3 18916372 18916476 -199120682 - L3 LINE CR1 -48 1529 1418 2256 105 0 0 chr3 18916839 18917143 -199120015 + AluSx SINE Alu 1 304 -8 267 289 13 0 chr3 18917156 18917232 -199119926 + MIR SINE MIR 186 262 0 566 314 39 39 chr3 18917251 18917480 -199119678 + MIR SINE MIR 28 256 -6 268 261 34 23 chr3 18918106 18918194 -199118964 + MIR SINE MIR 53 141 -67 276 254 99 0 chr3 18918232 18918303 -199118855 + MIR SINE MIR 114 191 -71 276 254 154 85 chr3 18918333 18918463 -199118695 - MIR SINE MIR -68 140 1 551 284 48 24 chr3 18918480 18918688 -199118470 + MIR SINE MIR 1 213 -49 266 234 219 31 chr3 18918823 18918951 -199118207 + MIR3 SINE MIR 43 194 -14 1053 266 99 27 chr3 18919588 18920072 -199117086 - LTR33 LTR ERVL -2 519 1 194 267 99 20 chr3 18920105 18920206 -199116952 - MIR SINE MIR -142 120 12 21 71 0 0 chr3 18920463 18920505 -199116653 + AT_rich Low_complexity Low_complexity 1 42 0 195 354 94 44 chr3 18920868 18921049 -199116109 - L2 LINE L2 -10 3262 3073 * 387 299 85 17 chr3 18921033 18921210 -199115948 + MIR SINE MIR 29 217 -45 399 308 130 43 chr3 18921376 18922133 -199115025 - L2 LINE L2 -190 3082 2245 266 253 133 0 chr3 18922375 18922458 -199114700 - MIR SINE MIR -70 192 99 236 277 8 92 chr3 18922965 18923095 -199114063 + MIR SINE MIR 111 229 -33 222 62 0 0 chr3 18923736 18923768 -199113390 + (TC)n Simple_repeat Simple_repeat 2 33 0 230 374 61 10 chr3 18923872 18923971 -199113187 - L2 LINE L2 -1 3271 3168 1454 249 59 32 chr3 18924068 18924509 -199112649 + LTR16C LTR ERVL 36 488 -3 203 369 78 0 chr3 18924589 18924675 -199112483 - L2 LINE L2 -25 3247 3150 1672 126 81 35 chr3 18924675 18924960 -199112198 + AluSg SINE Alu 1 298 -12 203 369 78 0 chr3 18924960 18924976 -199112182 - L2 LINE L2 -122 3150 3137 243 146 0 0 chr3 18924976 18925017 -199112141 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1889 155 10 0 chr3 18925027 18925331 -199111827 + AluJb SINE Alu 1 307 -5 378 177 21 10 chr3 18925342 18925438 -199111720 + GA-rich Low_complexity Low_complexity 4 100 0 479 299 58 102 chr3 18925440 18925591 -199111567 - L2 LINE L2 -113 3159 3003 2183 105 0 0 chr3 18925591 18925895 -199111263 - AluSx SINE Alu -8 304 1 479 299 58 102 chr3 18925895 18926087 -199111071 - L2 LINE L2 -269 3003 2831 867 194 61 0 chr3 18926176 18926341 -199110817 + FAM SINE Alu 1 175 0 454 161 46 8 chr3 18926363 18926493 -199110665 + GA-rich Low_complexity Low_complexity 4 138 0 366 95 18 28 chr3 18926660 18926735 -199110423 - Alu SINE Alu -251 50 1 319 355 24 24 chr3 18926735 18926901 -199110257 - L2 LINE L2 -276 2996 2831 867 194 61 0 chr3 18926990 18927155 -199110003 + FAM SINE Alu 1 175 0 201 256 0 0 chr3 18927159 18927198 -199109960 + polypurine Low_complexity Low_complexity 3 41 0 806 103 16 54 chr3 18927198 18927383 -199109775 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 675 115 68 0 chr3 18927383 18927531 -199109627 + GA-rich Low_complexity Low_complexity 2 159 0 804 87 22 54 chr3 18927538 18927723 -199109435 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 1846 123 28 3 chr3 18928194 18928479 -199108679 + AluJo SINE Alu 5 296 -16 460 253 32 26 chr3 18928668 18928822 -199108336 - MIR SINE MIR -43 219 65 448 291 75 20 chr3 18928948 18929147 -199108011 - MLT1K LTR MaLR -343 245 36 452 203 17 34 chr3 18929243 18929361 -199107797 - LTR33 LTR ERVL -7 514 399 774 241 132 34 chr3 18929392 18929687 -199107471 - LTR33 LTR ERVL -197 324 1 1384 179 108 14 chr3 18930361 18930385 -199106773 - MLT1F LTR MaLR -211 331 311 1642 212 50 16 chr3 18930385 18930762 -199106396 + MLT1B LTR MaLR 1 390 0 1384 179 108 14 chr3 18930762 18931034 -199106124 - MLT1F LTR MaLR -231 311 7 289 267 100 0 chr3 18931473 18931563 -199105595 - MIR3 SINE MIR -23 185 87 536 312 35 20 chr3 18931573 18931775 -199105383 - MIR SINE MIR -10 252 48 447 220 40 90 chr3 18932250 18932427 -199104731 - MIR3 SINE MIR -12 196 29 349 353 53 11 chr3 18932536 18932723 -199104435 + MIR SINE MIR 2 196 -66 765 148 23 0 chr3 18932725 18932853 -199104305 + FLAM_A SINE Alu 2 132 -1 611 109 10 0 chr3 18932936 18933037 -199104121 - L1MA8 LINE L1 -1 6290 6189 511 265 40 13 chr3 18933273 18933424 -199103734 + MIR SINE MIR 36 190 -72 480 293 26 47 chr3 18933579 18933811 -199103347 - MIR SINE MIR -16 246 20 242 177 242 0 chr3 18933830 18933892 -199103266 + L2 LINE L2 3194 3270 -2 558 289 83 45 chr3 18934734 18934976 -199102182 + MIR SINE MIR 1 251 -11 217 348 16 71 chr3 18935070 18935323 -199101835 - L2 LINE L2 -218 3054 2816 557 258 77 35 chr3 18935560 18935936 -199101222 + L1M4 LINE L1 2853 3244 -2902 1822 165 25 0 chr3 18935981 18936266 -199100892 + AluJo SINE Alu 1 292 -20 648 286 92 40 chr3 18936742 18937245 -199099913 + L1M4 LINE L1 3915 4443 -1703 2071 122 10 0 chr3 18937579 18937873 -199099285 + AluSx SINE Alu 1 297 -15 378 0 0 0 chr3 18937873 18937915 -199099243 + (TG)n Simple_repeat Simple_repeat 1 42 0 2210 96 0 34 chr3 18938492 18938814 -199098344 + AluY SINE Alu 1 311 0 368 252 35 35 chr3 18938814 18938929 -199098229 - MIR SINE MIR -123 139 25 587 179 207 90 chr3 18939965 18940255 -199096903 - MER33 DNA MER1_type 0 324 1 534 133 0 0 chr3 18940282 18940365 -199096793 + AluY SINE Alu 217 299 -12 2389 83 3 3 chr3 18940902 18941204 -199095954 + AluY SINE Alu 1 302 -9 187 241 69 0 chr3 18941253 18941311 -199095847 + MIR SINE MIR 91 152 -110 3427 123 31 0 chr3 18941603 18942084 -199095074 + MER1A DNA MER1_type 34 529 0 2366 88 7 0 chr3 18942510 18942815 -199094343 - AluSx SINE Alu -3 309 3 447 309 90 5 chr3 18942851 18943039 -199094119 - L1MEc LINE L1 -6098 298 95 207 0 0 0 chr3 18943041 18943064 -199094094 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1161 226 89 43 chr3 18943112 18943262 -199093896 - L1MEc LINE L1 -5222 1174 1032 2082 123 0 0 chr3 18943262 18943559 -199093599 - AluSp SINE Alu 0 302 6 1161 226 89 43 chr3 18943559 18943899 -199093259 - L1MEc LINE L1 -5364 1032 660 1143 163 69 0 chr3 18943936 18944138 -199093020 - AluJo SINE Alu -12 300 85 2366 92 3 13 chr3 18944138 18944452 -199092706 - AluSp SINE Alu -2 311 1 1088 116 29 6 chr3 18944670 18944842 -199092316 + MER47A DNA MER2_type 70 245 -121 850 117 17 0 chr3 18944845 18944965 -199092193 + AluSg/x SINE Alu 179 300 -12 304 156 0 0 chr3 18944968 18945013 -199092145 + MER47A DNA MER2_type 322 366 0 291 303 103 7 chr3 18945041 18945196 -199091962 - MIR SINE MIR -73 189 20 2204 103 0 32 chr3 18945818 18946129 -199091029 - AluSg SINE Alu -9 301 1 192 40 0 0 chr3 18947547 18947572 -199089586 + (A)n Simple_repeat Simple_repeat 1 25 0 289 279 72 9 chr3 18947644 18947755 -199089403 + MIR SINE MIR 24 141 -67 1919 151 3 3 chr3 18948143 18948435 -199088723 + AluSx SINE Alu 2 293 -19 2062 122 0 23 chr3 18948442 18948746 -199088412 + AluSx SINE Alu 1 297 -15 2197 90 13 20 chr3 18949229 18949529 -199087629 + AluSq SINE Alu 1 298 -15 2001 130 0 33 chr3 18950648 18950949 -199086209 - AluSg SINE Alu -19 291 1 1742 142 54 0 chr3 18950953 18951241 -199085917 - AluSx SINE Alu 0 310 9 1692 171 0 18 chr3 18951242 18951528 -199085630 - AluJo SINE Alu -10 302 22 306 239 25 0 chr3 18951528 18951608 -199085550 - L1M4c LINE L1 -4556 1826 1689 * 3525 138 75 3 chr3 18951603 18952212 -199084946 + L1MC1 LINE L1 5453 6105 -228 318 133 0 50 chr3 18952213 18952273 -199084885 + AluJo SINE Alu 87 143 -159 * 1677 116 4 4 chr3 18952265 18952507 -199084651 + MER50 LTR ERV1 493 734 0 374 124 49 0 chr3 18952584 18952656 -199084502 - MER4-int LTR ERV1 -989 5609 5545 563 121 0 0 chr3 18952866 18952949 -199084209 - AluS SINE Alu -228 84 2 21 0 0 0 chr3 18953229 18953250 -199083908 + AT_rich Low_complexity Low_complexity 1 21 0 239 196 0 36 chr3 18953821 18953877 -199083281 - L2 LINE L2 -26 3287 3234 2323 92 0 0 chr3 18954436 18954720 -199082438 + AluSx SINE Alu 11 294 -18 1297 155 18 0 chr3 18954721 18954940 -199082218 - L1PA14 LINE L1 -17 6144 5922 662 200 21 14 chr3 18955043 18955188 -199081970 + AluSc SINE Alu 154 299 -10 3235 166 21 25 chr3 18955189 18955821 -199081337 + L1MB7 LINE L1 5482 6110 -74 2166 103 0 63 chr3 18955883 18956202 -199080956 - AluSx SINE Alu -13 299 1 394 83 83 0 chr3 18956205 18956265 -199080893 + L1MB7 LINE L1 6114 6178 -6 1455 149 42 54 chr3 18957035 18957147 -199080011 + L1MB3 LINE L1 5553 5665 -515 2127 97 14 3 chr3 18957147 18957435 -199079723 + AluSq SINE Alu 1 291 -22 1455 149 42 54 chr3 18957435 18957605 -199079553 + L1MB3 LINE L1 5665 5836 -344 2085 107 14 3 chr3 18957605 18957896 -199079262 + AluSx SINE Alu 1 294 -18 1455 149 42 54 chr3 18957896 18957957 -199079201 + L1MB3 LINE L1 5836 5896 -284 2267 112 0 22 chr3 18958935 18959249 -199077909 - AluSx SINE Alu -5 307 1 308 232 89 35 chr3 18959328 18959497 -199077661 - L1MC5 LINE L1 -169 7873 7603 317 158 122 33 chr3 18959516 18959648 -199077510 - FLAM_C SINE Alu -10 123 1 288 174 0 0 chr3 18960337 18960383 -199076775 + Alu SINE Alu 1 46 -257 223 268 14 0 chr3 18960722 18960793 -199076365 + T-rich Low_complexity Low_complexity 3 74 0 1235 164 5 19 chr3 18960963 18961171 -199075987 - AluJb SINE Alu -107 205 1 1535 173 76 14 chr3 18961194 18961483 -199075675 - AluJo SINE Alu -3 309 3 289 213 39 8 chr3 18962676 18962756 -199074402 + L1MC/D LINE L1 5409 5490 -684 2198 104 7 20 chr3 18962756 18963055 -199074103 + AluSx SINE Alu 1 295 -17 289 213 39 8 chr3 18963055 18963066 -199074092 + L1MC/D LINE L1 5490 5499 -675 2032 136 17 0 chr3 18963381 18963682 -199073476 - AluSx SINE Alu -6 306 1 207 0 0 0 chr3 18964875 18964898 -199072260 + (A)n Simple_repeat Simple_repeat 1 23 0 280 288 72 9 chr3 18964970 18965081 -199072077 + MIR SINE MIR 24 141 -67 2049 138 3 0 chr3 18965469 18965760 -199071398 + AluSx SINE Alu 2 293 -19 2080 121 0 23 chr3 18965767 18966073 -199071085 + AluSx SINE Alu 1 299 -13 2232 90 10 20 chr3 18966557 18966857 -199070301 + AluSq SINE Alu 1 297 -16 1549 161 57 11 chr3 18967976 18968255 -199068903 - AluSg SINE Alu -18 292 1 481 245 77 13 chr3 18968489 18968673 -199068485 + L1ME3A LINE L1 5959 6162 -2 683 91 0 83 chr3 18968685 18968739 -199068419 - L1MA3 LINE L1 0 6305 6265 2451 76 13 0 chr3 18968739 18969041 -199068117 - AluSq SINE Alu -7 306 1 683 91 0 83 chr3 18969041 18969107 -199068051 - L1MA3 LINE L1 -40 6265 6195 854 195 0 0 chr3 18969122 18969295 -199067863 + AluJb SINE Alu 134 306 0 1841 148 4 0 chr3 18969425 18969689 -199067469 + AluJo SINE Alu 1 265 -47 262 198 136 12 chr3 18970040 18970121 -199067037 - MIR3 SINE MIR -10 198 108 2016 113 3 40 chr3 18970191 18970330 -199066828 + AluSq SINE Alu 1 144 -169 2772 35 0 0 chr3 18970330 18970641 -199066517 + AluY SINE Alu 1 311 0 2016 113 3 40 chr3 18970641 18970802 -199066356 + AluSq SINE Alu 144 290 -23 2071 130 0 32 chr3 18971091 18971406 -199065752 - AluSg SINE Alu -5 305 1 1786 145 52 0 chr3 18971410 18971706 -199065452 - AluSx SINE Alu 0 310 1 1700 171 0 17 chr3 18971708 18971995 -199065163 - AluJo SINE Alu -9 303 22 306 239 25 0 chr3 18971995 18972075 -199065083 - L1M4c LINE L1 -4556 1826 1689 * 3700 130 74 2 chr3 18972070 18972679 -199064479 + L1MC1 LINE L1 5453 6105 -228 318 133 0 50 chr3 18972680 18972740 -199064418 + AluJo SINE Alu 87 143 -159 * 1677 116 4 4 chr3 18972732 18972974 -199064184 + MER50 LTR ERV1 493 734 0 523 92 2 0 chr3 18973069 18973144 -199064014 - MER4-int LTR ERV1 -989 5609 5545 980 100 27 20 chr3 18973196 18973346 -199063812 + MER50-int LTR ERV1 6969 7119 -86 22 0 0 0 chr3 18973352 18973374 -199063784 + AT_rich Low_complexity Low_complexity 1 22 0 2153 122 0 7 chr3 18973376 18973671 -199063487 + AluSx SINE Alu 3 295 -17 281 204 53 76 chr3 18973803 18973817 -199063341 + L1ME3 LINE L1 2202 2215 -4181 2126 114 7 26 chr3 18973817 18974123 -199063035 + AluSx SINE Alu 1 300 -12 281 204 53 76 chr3 18974123 18974201 -199062957 + L1ME3 LINE L1 2215 2293 -4103 2184 104 7 3 chr3 18974201 18974489 -199062669 + AluSg1 SINE Alu 1 289 -20 281 204 53 76 chr3 18974489 18974527 -199062631 + L1ME3 LINE L1 2293 2330 -4066 232 260 96 10 chr3 18975805 18975909 -199061249 - MIR SINE MIR -46 216 104 220 314 59 29 chr3 18976662 18976764 -199060394 - MIR SINE MIR -63 145 41 263 270 43 26 chr3 18976948 18977063 -199060095 - MIR3 SINE MIR -32 176 60 246 162 206 0 chr3 18977099 18977167 -199059991 + MER103 DNA DNA 12 93 -73 259 267 53 0 chr3 18978126 18978201 -199058957 + MIR SINE MIR 113 191 -71 * 414 228 92 71 chr3 18978196 18978380 -199058778 - MIR SINE MIR 0 262 75 833 140 0 0 chr3 18979588 18979702 -199057456 + FLAM_C SINE Alu 6 119 -24 21 0 0 0 chr3 18979854 18979875 -199057283 + AT_rich Low_complexity Low_complexity 1 21 0 1658 191 126 55 chr3 18979976 18980501 -199056657 - MER68 LTR ERV1 0 562 1 3475 121 31 0 chr3 18980654 18981135 -199056023 + MER1A DNA MER1_type 34 529 0 2460 82 3 0 chr3 18981561 18981866 -199055292 - AluSx SINE Alu -2 310 5 1619 159 62 38 chr3 18981900 18982190 -199054968 + AluJo SINE Alu 1 297 -15 2535 241 56 32 chr3 18982191 18983071 -199054087 + L1ME3 LINE L1 3571 4471 -1744 213 109 0 55 chr3 18983616 18983671 -199053487 + (TA)n Simple_repeat Simple_repeat 2 53 0 340 106 0 0 chr3 18983671 18983718 -199053440 - MER4E LTR ERV1 -69 697 651 645 248 122 17 chr3 18983737 18983975 -199053183 + L1MC4a LINE L1 5732 5994 -1814 2237 89 3 10 chr3 18984179 18984483 -199052675 + AluSx SINE Alu 1 302 -10 723 221 39 24 chr3 18984590 18984901 -199052257 + L1ME3 LINE L1 4544 6117 -122 784 129 187 0 chr3 18984994 18985133 -199052025 + FRAM SINE Alu 1 162 -14 348 144 31 62 chr3 18985133 18985230 -199051928 + L1ME3 LINE L1 6114 6207 -24 303 264 300 0 chr3 18985246 18985356 -199051802 - L2 LINE L2 -556 2758 2616 1130 53 0 13 chr3 18985374 18985524 -199051634 + AluSp/q SINE Alu 155 302 -11 287 282 86 8 chr3 18986864 18986981 -199050177 - MIR SINE MIR -33 229 104 252 324 57 29 chr3 18987734 18987839 -199049319 - MIR SINE MIR -63 145 38 308 270 43 26 chr3 18988020 18988135 -199049023 - MIR3 SINE MIR -32 176 60 247 162 206 0 chr3 18988171 18988239 -199048919 + MER103 DNA DNA 12 93 -73 293 267 53 0 chr3 18989198 18989273 -199047885 + MIR SINE MIR 113 191 -71 * 485 228 92 71 chr3 18989268 18989452 -199047706 - MIR SINE MIR 0 262 75 198 0 0 0 chr3 18989631 18989653 -199047505 + (A)n Simple_repeat Simple_repeat 1 22 0 201 314 43 14 chr3 18990331 18990401 -199046757 - MIR SINE MIR -90 118 47 817 152 0 30 chr3 18990663 18990795 -199046363 + FLAM_C SINE Alu 6 133 -10 21 0 0 0 chr3 18990929 18990950 -199046208 + AT_rich Low_complexity Low_complexity 1 21 0 1698 189 126 55 chr3 18991051 18991576 -199045582 - MER68 LTR ERV1 0 562 1 3422 118 31 6 chr3 18991729 18992213 -199044945 + MER1A DNA MER1_type 34 529 0 2407 62 0 3 chr3 18992639 18992948 -199044210 - AluY SINE Alu -3 308 1 1536 131 39 50 chr3 18992948 18993118 -199044040 - L1MB3 LINE L1 -352 5831 5664 2097 94 10 0 chr3 18993118 18993406 -199043752 - AluSq SINE Alu -22 291 1 1536 131 39 50 chr3 18993406 18993517 -199043641 - L1MB3 LINE L1 -519 5664 5553 3530 157 8 8 chr3 18993761 18994373 -199042785 - L1MB8 LINE L1 0 6178 5567 288 243 53 74 chr3 18994438 18994627 -199042531 - L1MC5 LINE L1 -542 7419 7235 254 29 88 0 chr3 18994644 18994678 -199042480 - L1M4 LINE L1 -1225 4921 4885 1872 156 0 13 chr3 18994685 18995000 -199042158 - AluJb SINE Alu -1 311 1 1431 183 66 3 chr3 18995023 18995312 -199041846 - AluJo SINE Alu -3 309 3 470 308 101 17 chr3 18995348 18995538 -199041620 - L1MEc LINE L1 -6098 298 83 207 0 0 0 chr3 18995538 18995561 -199041597 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 470 308 101 17 chr3 18995561 18995607 -199041551 - L1MEc LINE L1 -6313 83 42 1212 220 69 40 chr3 18995609 18995761 -199041397 - L1MEc LINE L1 -5218 1178 1032 2082 101 0 0 chr3 18995761 18996058 -199041100 - AluSq SINE Alu 0 302 6 1212 220 69 40 chr3 18996058 18996326 -199040832 - L1MEc LINE L1 -5364 1032 745 1066 163 69 0 chr3 18996434 18996636 -199040522 - AluJo SINE Alu -12 300 85 2243 92 3 13 chr3 18996636 18996951 -199040207 - AluSp SINE Alu -1 312 1 1079 116 29 6 chr3 18997169 18997341 -199039817 + MER47A DNA MER2_type 70 245 -121 803 117 17 0 chr3 18997344 18997464 -199039694 + AluSg/x SINE Alu 179 300 -12 303 156 0 0 chr3 18997467 18997512 -199039646 + MER47A DNA MER2_type 322 366 0 363 297 103 7 chr3 18997540 18997695 -199039463 - MIR SINE MIR -73 189 20 204 333 19 0 chr3 18997902 18997956 -199039202 + L2 LINE L2 3205 3259 -13 1938 103 30 30 chr3 18998319 18998620 -199038538 - AluSg SINE Alu -9 301 1 2217 92 0 20 chr3 18999766 19000069 -199037089 + AluSq SINE Alu 12 308 -5 1918 119 54 0 chr3 19000275 19000569 -199036589 - AluSg SINE Alu 0 310 1 448 286 118 70 chr3 19000809 19001166 -199035992 - L1ME3 LINE L1 -196 5966 5593 1978 107 14 3 chr3 19001754 19002045 -199035113 - AluSx SINE Alu -18 294 1 1661 155 0 38 chr3 19002403 19002719 -199034439 + AluJb SINE Alu 1 304 -8 22 0 0 0 chr3 19002752 19002774 -199034384 + AT_rich Low_complexity Low_complexity 1 22 0 2284 88 0 0 chr3 19002774 19003070 -199034088 + AluY SINE Alu 1 296 -15 783 195 0 0 chr3 19003073 19003201 -199033957 - AluJo/FLAM SINE Alu -174 128 1 234 243 214 19 chr3 19003381 19003484 -199033674 + L2 LINE L2 3150 3272 0 236 323 47 0 chr3 19004275 19004370 -199032788 + MIR SINE MIR 64 163 -60 349 253 13 0 chr3 19004548 19004627 -199032531 + MIR SINE MIR 166 245 -17 232 227 130 64 chr3 19004706 19004818 -199032340 - MIR SINE MIR -42 220 87 2355 174 29 13 chr3 19004867 19005322 -199031836 - L1MB7 LINE L1 -208 5976 5515 369 0 0 0 chr3 19005352 19005393 -199031765 + (TG)n Simple_repeat Simple_repeat 2 42 0 1420 113 18 5 chr3 19005394 19005615 -199031543 - L1PA8 LINE L1 -10 6162 5939 192 205 26 0 chr3 19006023 19006062 -199031096 - L2 LINE L2 -43 3270 3231 1837 112 46 30 chr3 19006096 19006401 -199030757 - AluJb SINE Alu -2 310 1 311 281 52 10 chr3 19006468 19006564 -199030594 - L1ME LINE L1 -5019 1063 964 1494 243 121 56 chr3 19006579 19006842 -199030316 - L1ME LINE L1 -5220 850 606 2297 81 0 3 chr3 19006842 19007139 -199030019 - AluSq SINE Alu -17 296 1 1494 243 121 56 chr3 19007139 19007472 -199029686 - L1ME LINE L1 -5464 606 186 1966 125 14 0 chr3 19007472 19007768 -199029390 - AluSx SINE Alu -1 311 12 1494 243 121 56 chr3 19007768 19007962 -199029196 - L1ME LINE L1 -5884 186 6 198 0 0 0 chr3 19008021 19008043 -199029115 + (T)n Simple_repeat Simple_repeat 1 22 0 302 253 0 81 chr3 19008252 19008339 -199028819 - L2 LINE L2 -7 3265 3186 1927 114 35 7 chr3 19008340 19008629 -199028529 - AluSx SINE Alu -15 297 1 617 138 147 17 chr3 19008981 19009097 -199028061 + FLAM_C SINE Alu 1 131 -2 2011 107 0 21 chr3 19009632 19009921 -199027237 - AluSx SINE Alu -29 283 1 273 136 0 0 chr3 19010359 19010403 -199026755 + Charlie4 DNA MER1_type 1864 1907 -54 296 247 103 41 chr3 19010799 19010896 -199026262 + MIR SINE MIR 82 184 -78 27 0 0 0 chr3 19012770 19012797 -199024361 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr3 19012928 19012948 -199024210 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 21 57 0 0 chr3 19015565 19015600 -199021558 + AT_rich Low_complexity Low_complexity 1 35 0 1924 145 17 0 chr3 19015996 19016293 -199020865 - AluSx SINE Alu -10 302 1 1038 157 68 36 chr3 19017019 19017268 -199019890 - AluJo SINE Alu -55 257 1 1609 151 83 88 chr3 19017315 19017487 -199019671 + L1MB7 LINE L1 5736 5907 -277 1844 181 27 0 chr3 19017487 19017825 -199019333 - MER7A DNA MER2_type 0 346 2 1609 151 83 88 chr3 19017825 19017938 -199019220 + L1MB7 LINE L1 5907 6019 -165 2278 158 41 14 chr3 19017938 19018356 -199018802 + MSTB1 LTR MaLR 4 432 0 1609 151 83 88 chr3 19018356 19018501 -199018657 + L1MB7 LINE L1 6019 6165 -19 1325 164 12 12 chr3 19018696 19018940 -199018218 + AluJo SINE Alu 50 293 -19 2128 112 0 10 chr3 19018946 19019251 -199017907 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 19019260 19019285 -199017873 + AT_rich Low_complexity Low_complexity 1 25 0 1852 154 3 3 chr3 19019485 19019784 -199017374 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 19020135 19020163 -199016995 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 800 160 84 0 chr3 19021084 19021215 -199015943 - AluJb SINE Alu -14 298 157 426 226 128 49 chr3 19021602 19021766 -199015392 - MIR SINE MIR -52 210 34 2331 68 0 16 chr3 19021890 19022198 -199014960 - AluY SINE Alu -8 303 1 1960 112 39 3 chr3 19022254 19022539 -199014619 - AluSx SINE Alu -17 295 1 232 303 40 0 chr3 19022542 19022618 -199014540 - L3 LINE CR1 -162 1415 1337 897 112 0 0 chr3 19022945 19023070 -199014088 - FLAM_A SINE Alu 0 142 18 276 329 228 10 chr3 19023726 19024024 -199013134 - L3 LINE CR1 -631 946 584 254 250 279 10 chr3 19024124 19024228 -199012930 + L3 LINE CR1 1254 1385 -192 1546 156 11 25 chr3 19024250 19024526 -199012632 - AluJo SINE Alu -36 276 5 233 333 33 22 chr3 19024535 19024625 -199012533 + L3 LINE CR1 1378 1468 -109 523 290 208 8 chr3 19024660 19025034 -199012124 + L2 LINE L2 2753 3211 -102 1837 148 10 3 chr3 19025034 19025332 -199011826 - AluJb SINE Alu -12 300 1 2231 110 3 0 chr3 19025343 19025652 -199011506 - AluSx SINE Alu -2 310 1 2399 58 0 0 chr3 19026062 19026356 -199010802 - AluY SINE Alu -17 294 1 1823 135 7 14 chr3 19026791 19027079 -199010079 + AluJb SINE Alu 1 286 -26 1686 158 26 29 chr3 19027158 19027469 -199009689 - AluJb SINE Alu -2 310 1 1894 134 40 3 chr3 19027613 19027912 -199009246 + AluJo SINE Alu 1 310 -2 180 182 0 0 chr3 19028474 19028507 -199008651 + MIR3 SINE MIR 162 194 -14 1626 92 0 0 chr3 19029803 19030020 -199007138 - AluSx SINE Alu -95 217 1 305 262 94 34 chr3 19030302 19030451 -199006707 - MIR3 SINE MIR -1 207 50 30 59 0 0 chr3 19030802 19030853 -199006305 + AT_rich Low_complexity Low_complexity 1 51 0 1027 173 0 45 chr3 19031563 19031765 -199005393 - AluJo SINE Alu -69 243 51 906 225 12 0 chr3 19032223 19032396 -199004762 - FAM SINE Alu 0 175 1 297 0 0 0 chr3 19034409 19034442 -199002716 + (TG)n Simple_repeat Simple_repeat 2 34 0 1701 142 39 3 chr3 19034454 19034736 -199002422 - AluSx SINE Alu -20 292 1 2118 82 30 36 chr3 19035696 19035865 -199001293 - AluSx SINE Alu -9 303 135 1186 47 13 0 chr3 19035865 19036014 -199001144 - L1PA4 LINE L1 0 6155 6005 2118 82 30 36 chr3 19036014 19036149 -199001009 - AluSx SINE Alu -177 135 1 1997 145 0 0 chr3 19036525 19036829 -199000329 + AluJb SINE Alu 2 305 -7 2212 102 3 0 chr3 19036829 19037132 -199000026 + AluSc SINE Alu 1 304 -5 552 289 116 31 chr3 19038553 19038778 -198998380 - MIR SINE MIR 0 262 19 830 159 0 0 chr3 19038813 19038939 -198998219 - FLAM_C SINE Alu -7 126 1 1310 207 17 14 chr3 19040364 19040654 -198996504 - AluJo SINE Alu 0 312 22 1795 42 0 0 chr3 19040658 19040873 -198996285 + AluY SINE Alu 82 296 -15 353 277 0 0 chr3 19041342 19041425 -198995733 + L1ME LINE L1 5733 5815 -306 2373 80 0 0 chr3 19041525 19041827 -198995331 + AluSq SINE Alu 1 302 -11 22 0 0 0 chr3 19043370 19043392 -198993766 + AT_rich Low_complexity Low_complexity 1 22 0 336 271 139 0 chr3 19043413 19043564 -198993594 + L1MC5 LINE L1 7720 7891 -70 1398 206 25 0 chr3 19043608 19043884 -198993274 - AluJb SINE Alu -29 283 1 345 256 17 128 chr3 19044176 19044348 -198992810 - MER5B DNA MER1_type 0 178 26 258 105 0 0 chr3 19044396 19044434 -198992724 + (CAG)n Simple_repeat Simple_repeat 2 39 0 1994 97 3 10 chr3 19044928 19045217 -198991941 + AluSg SINE Alu 1 287 -23 313 329 43 21 chr3 19045283 19045423 -198991735 - MIR SINE MIR -117 145 3 1641 141 6 56 chr3 19046087 19046268 -198990890 - AluJb SINE Alu -8 304 144 1941 134 7 7 chr3 19046268 19046573 -198990585 - AluSx SINE Alu -7 305 1 1641 141 6 56 chr3 19046573 19046711 -198990447 - AluJb SINE Alu -168 144 1 1990 108 46 23 chr3 19046762 19047067 -198990091 + AluSx SINE Alu 1 312 0 226 309 81 49 chr3 19048070 19048123 -198989035 - MIR SINE MIR -66 142 92 2231 60 0 0 chr3 19048123 19048430 -198988728 + AluY SINE Alu 2 308 0 1985 133 0 3 chr3 19048440 19048742 -198988416 + AluSq SINE Alu 1 301 -12 226 309 81 49 chr3 19048742 19048799 -198988359 - MIR SINE MIR -124 84 16 2268 89 0 0 chr3 19048959 19049261 -198987897 + AluY SINE Alu 1 302 -9 1903 98 29 11 chr3 19049295 19049593 -198987565 - AluSc SINE Alu 0 303 1 1583 176 3 24 chr3 19049637 19049927 -198987231 - AluJo SINE Alu -20 292 9 231 0 266 0 chr3 19050054 19050118 -198987040 + (CAGTT)n Simple_repeat Simple_repeat 2 82 0 409 286 176 24 chr3 19050235 19050445 -198986713 - MIR SINE MIR 0 262 21 420 300 61 22 chr3 19050694 19050924 -198986234 + L1ME LINE L1 5551 5789 -332 546 283 128 13 chr3 19051571 19051797 -198985361 + L2 LINE L2 2885 3136 -177 846 129 0 23 chr3 19052040 19052172 -198984986 + FLAM_C SINE Alu 2 130 -3 23 0 0 0 chr3 19052217 19052240 -198984918 + AT_rich Low_complexity Low_complexity 1 23 0 482 179 0 0 chr3 19052244 19052322 -198984836 - FLAM SINE Alu -14 129 52 2320 59 10 13 chr3 19052674 19052978 -198984180 + AluY SINE Alu 1 303 -8 187 235 196 0 chr3 19055094 19055145 -198982013 + L2 LINE L2 3230 3290 -23 * 196 174 22 65 chr3 19055113 19055159 -198981999 + L2 LINE L2 3217 3260 -12 1806 169 0 7 chr3 19055195 19055490 -198981668 + AluJo SINE Alu 1 293 -19 1694 115 84 0 chr3 19055496 19055781 -198981377 + AluSg SINE Alu 1 307 0 241 308 95 53 chr3 19055838 19056007 -198981151 + L2 LINE L2 2679 2854 -460 714 284 42 21 chr3 19057095 19057334 -198979824 - MIR SINE MIR -2 260 17 330 329 21 14 chr3 19057356 19057496 -198979662 + MIR3 SINE MIR 14 154 -54 1757 147 3 7 chr3 19057545 19057831 -198979327 + AluJb SINE Alu 1 285 -27 827 195 0 12 chr3 19057864 19058033 -198979125 + L1MB7 LINE L1 6007 6173 -11 285 300 80 0 chr3 19058203 19058303 -198978855 + L2 LINE L2 3206 3313 0 302 277 98 27 chr3 19058342 19058454 -198978704 + L2 LINE L2 3151 3270 -2 248 196 0 20 chr3 19058534 19058585 -198978573 - LTR67 LTR ERVL 0 557 508 1891 114 0 0 chr3 19059439 19059702 -198977456 + AluSx SINE Alu 1 263 -49 407 228 177 32 chr3 19059756 19059914 -198977244 - MIR SINE MIR -62 200 20 190 279 132 0 chr3 19059929 19059997 -198977161 + MIR3 SINE MIR 78 154 -54 216 236 6 35 chr3 19060874 19060932 -198976226 + MIR SINE MIR 95 154 -61 2379 65 0 3 chr3 19061041 19061349 -198975809 - AluY SINE Alu -4 307 1 305 296 74 22 chr3 19061349 19061484 -198975674 + MIR3 SINE MIR 64 205 -3 225 320 120 51 chr3 19061865 19062298 -198974860 + L2 LINE L2 2652 3113 -159 920 128 0 7 chr3 19062304 19062445 -198974713 - AluJb SINE Alu -172 140 1 1361 119 5 5 chr3 19063228 19063438 -198973720 - AluJb SINE Alu -4 308 99 3383 167 21 41 chr3 19064166 19064242 -198972916 + L1MB7 LINE L1 5413 5489 -695 2133 109 3 3 chr3 19064242 19064545 -198972613 + AluSx SINE Alu 1 303 -9 3383 167 21 41 chr3 19064545 19065180 -198971978 + L1MB7 LINE L1 5489 6110 -74 2054 103 0 62 chr3 19065242 19065563 -198971595 - AluSx SINE Alu -11 301 1 400 82 66 0 chr3 19065566 19065627 -198971531 + L1MB7 LINE L1 6114 6178 -6 408 273 251 0 chr3 19066133 19066316 -198970842 - MIR SINE MIR 0 262 34 473 205 9 0 chr3 19066651 19066763 -198970395 + GA-rich Low_complexity Low_complexity 1 113 0 2056 86 65 0 chr3 19066997 19067289 -198969869 - AluSx SINE Alu -1 311 1 2277 90 0 6 chr3 19067400 19067712 -198969446 + AluSg SINE Alu 1 310 0 193 322 147 0 chr3 19067816 19067959 -198969199 - MIR SINE MIR 0 262 99 2058 124 0 0 chr3 19068254 19068552 -198968606 + AluSx SINE Alu 1 298 -14 214 300 127 32 chr3 19068729 19068949 -198968209 - L2 LINE L2 -69 3203 2963 261 301 79 4 chr3 19069018 19069170 -198967988 - MIR SINE MIR -55 153 35 255 228 22 76 chr3 19069566 19069658 -198967500 + MIR SINE MIR 65 151 -57 478 259 42 35 chr3 19069880 19070108 -198967050 - MIR3 SINE MIR -25 237 11 595 341 18 27 chr3 19070451 19070674 -198966484 - MIR SINE MIR -40 222 2 411 213 74 9 chr3 19070696 19070804 -198966354 + MER5B DNA MER1_type 1 115 -63 424 239 69 11 chr3 19071322 19071474 -198965684 - L1MC/D LINE L1 -916 5443 5313 1684 148 0 11 chr3 19071907 19072184 -198964974 - AluJb SINE Alu -34 278 5 395 314 131 21 chr3 19072863 19073146 -198964012 + L2 LINE L2 2848 3161 -111 455 220 107 94 chr3 19073232 19073391 -198963767 + MIR3 SINE MIR 4 164 -44 321 259 136 5 chr3 19073667 19073812 -198963346 + MIR SINE MIR 25 185 -77 253 265 132 29 chr3 19073887 19074023 -198963135 + MIR SINE MIR 91 240 -22 614 262 14 0 chr3 19074880 19075034 -198962124 + MIR SINE MIR 39 193 -60 1263 176 0 0 chr3 19076174 19076390 -198960768 + AluJo SINE Alu 85 300 -12 289 214 12 71 chr3 19076414 19076498 -198960660 - L1ME LINE L1 -356 5814 5736 1136 134 0 0 chr3 19076499 19076671 -198960487 - FRAM SINE Alu -7 169 1 2228 110 0 0 chr3 19076867 19077175 -198959983 - AluSx SINE Alu -1 311 4 485 308 31 13 chr3 19077178 19077337 -198959821 + MIR SINE MIR 61 222 -40 264 161 113 0 chr3 19077567 19077629 -198959529 + MIR SINE MIR 119 187 -75 195 309 106 16 chr3 19077927 19078115 -198959043 + L2 LINE L2 2725 2929 -385 2083 109 13 16 chr3 19078336 19078649 -198958509 - AluSx SINE Alu 0 312 1 416 277 208 0 chr3 19078731 19078890 -198958268 + MIR SINE MIR 58 249 -13 340 207 126 0 chr3 19078898 19078985 -198958173 - MER53 DNA DNA 0 189 92 3415 162 41 25 chr3 19079058 19079699 -198957459 - MER82 DNA MER2_type -1 652 2 189 0 0 0 chr3 19079713 19079734 -198957424 + (TG)n Simple_repeat Simple_repeat 2 22 0 530 196 62 84 chr3 19079771 19079941 -198957217 + L1MC5 LINE L1 7688 7853 -108 2150 102 3 3 chr3 19079941 19080236 -198956922 - AluSp SINE Alu -18 295 1 530 196 62 84 chr3 19080236 19080290 -198956868 + L1MC5 LINE L1 7853 7907 -54 201 162 0 0 chr3 19080366 19080403 -198956755 + T-rich Low_complexity Low_complexity 1 37 0 465 331 41 0 chr3 19080452 19080624 -198956534 + MIR3 SINE MIR 24 202 -6 2051 96 0 30 chr3 19080909 19081212 -198955946 + AluSx SINE Alu 1 294 -18 459 296 62 6 chr3 19081257 19081419 -198955739 - L2 LINE L2 -183 3089 2919 240 301 79 10 chr3 19081670 19081803 -198955355 - MIR SINE MIR -63 145 5 246 345 0 0 chr3 19082777 19082864 -198954294 - MIR SINE MIR -19 243 157 335 227 57 23 chr3 19083272 19083360 -198953798 + MIR SINE MIR 108 198 -64 277 210 32 0 chr3 19083401 19083463 -198953695 - MER5B DNA MER1_type -63 115 52 1047 161 62 13 chr3 19083684 19083962 -198953196 - MER2 DNA MER2_type 0 345 2 2618 183 67 17 chr3 19084352 19084931 -198952227 - L1MB7 LINE L1 0 6184 5577 234 244 128 13 chr3 19084933 19085011 -198952147 - MIR3 SINE MIR -54 154 68 220 227 164 27 chr3 19086645 19086755 -198950403 + MIR SINE MIR 19 143 -65 660 258 131 10 chr3 19086812 19087010 -198950148 - MIR SINE MIR -29 233 12 848 252 47 8 chr3 19088397 19088651 -198948507 - L1MB7 LINE L1 0 6184 5921 2188 133 0 3 chr3 19088805 19089107 -198948051 - AluSx SINE Alu -11 301 1 1717 174 75 3 chr3 19089561 19089882 -198947276 - MER2 DNA MER2_type 0 344 1 860 205 60 10 chr3 19090536 19090736 -198946422 + L1MC4a LINE L1 5408 5617 -2191 2363 202 42 8 chr3 19090746 19091246 -198945912 - L1MB5 LINE L1 -167 6007 5491 2416 84 0 0 chr3 19091262 19091558 -198945600 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr3 19091580 19091604 -198945554 + AT_rich Low_complexity Low_complexity 1 24 0 1246 205 12 0 chr3 19091620 19091879 -198945279 - L1MB5 LINE L1 -970 5176 4915 765 240 47 34 chr3 19091878 19092111 -198945047 + L1MC4a LINE L1 5600 5835 -1973 * 23 24 0 24 chr3 19092186 19092212 -198944946 + AT_rich Low_complexity Low_complexity 1 27 -13 1908 125 0 53 chr3 19092212 19092516 -198944642 - AluSx SINE Alu -24 288 1 23 24 0 24 chr3 19092516 19092530 -198944628 + AT_rich Low_complexity Low_complexity 27 40 0 2386 105 0 0 chr3 19092659 19092964 -198944194 + AluSx SINE Alu 1 305 -7 1624 169 0 4 chr3 19093091 19093346 -198943812 - AluJb SINE Alu -58 254 1 236 245 0 0 chr3 19093421 19093474 -198943684 - MLT1H LTR MaLR -13 536 484 194 321 92 9 chr3 19093538 19093647 -198943511 - MIR3 SINE MIR -45 163 46 329 273 145 29 chr3 19094034 19094206 -198942952 + MER117 DNA MER1_type 6 197 0 1316 195 30 34 chr3 19095593 19095891 -198941267 - MLT1C LTR MaLR 0 467 171 241 73 0 109 chr3 19095909 19095964 -198941194 - L1MA4 LINE L1 -11 6289 6241 374 181 79 0 chr3 19095964 19096062 -198941096 - MLT1C LTR MaLR -221 169 52 874 139 16 0 chr3 19096746 19096875 -198940283 - FLAM_C SINE Alu -12 131 1 345 321 28 0 chr3 19097133 19097242 -198939916 - L2 LINE L2 -35 3237 3126 322 282 67 26 chr3 19097289 19097484 -198939674 - MIR SINE MIR -1 261 59 350 315 139 14 chr3 19097505 19097721 -198939437 - MIR SINE MIR -7 255 13 373 243 195 38 chr3 19098468 19098653 -198938505 - MIR SINE MIR 0 262 49 459 212 34 25 chr3 19099036 19099154 -198938004 - MIR SINE MIR -83 179 61 419 107 333 0 chr3 19099445 19099520 -198937638 - U6 snRNA snRNA -7 100 1 2003 116 40 7 chr3 19100079 19100381 -198936777 + AluSx SINE Alu 1 312 0 231 61 0 0 chr3 19100484 19100517 -198936641 + (T)n Simple_repeat Simple_repeat 1 33 0 437 228 55 55 chr3 19100564 19100607 -198936551 - L1ME4a LINE L1 -16 6105 6063 2255 121 3 0 chr3 19100607 19100914 -198936244 + AluSc SINE Alu 1 308 -1 437 228 55 55 chr3 19100914 19101015 -198936143 - L1ME4a LINE L1 -57 6064 5961 24 0 0 0 chr3 19101784 19101808 -198935350 + AT_rich Low_complexity Low_complexity 1 24 0 1374 157 4 30 chr3 19102115 19102350 -198934808 + AluJo SINE Alu 1 229 -83 1755 141 74 0 chr3 19102554 19102823 -198934335 + AluJo SINE Alu 1 289 -23 2284 104 17 0 chr3 19103322 19103620 -198933538 + AluSx SINE Alu 1 303 -9 902 205 6 0 chr3 19103635 19103801 -198933357 + AluJb SINE Alu 137 303 -9 389 206 0 41 chr3 19103902 19103999 -198933159 - L1MB8 LINE L1 -1 6177 6085 1629 173 0 0 chr3 19104128 19104377 -198932781 + AluJb SINE Alu 1 249 -63 2317 82 0 0 chr3 19104728 19105032 -198932126 + AluSg SINE Alu 1 304 0 498 248 24 16 chr3 19105033 19105158 -198932000 - MER3 DNA MER1_type -71 138 13 462 276 46 7 chr3 19105179 19105331 -198931827 + MIR SINE MIR 98 255 -7 273 314 0 0 chr3 19105411 19105481 -198931677 - L2 LINE L2 -15 3298 3229 230 267 128 0 chr3 19105551 19105637 -198931521 + L2 LINE L2 3217 3313 0 995 180 0 11 chr3 19106673 19106851 -198930307 - FRAM SINE Alu -8 168 1 2058 150 3 0 chr3 19107009 19107316 -198929842 - AluSx SINE Alu -4 308 1 827 136 0 0 chr3 19108910 19109028 -198928130 - 5S rRNA rRNA -1 120 3 259 263 127 25 chr3 19109233 19109351 -198927807 + L1P LINE L1 4883 5012 -1134 1952 161 0 0 chr3 19109386 19109678 -198927480 - AluJb SINE Alu -15 297 6 239 196 0 36 chr3 19110231 19110287 -198926871 + L2 LINE L2 3234 3287 -26 21 0 0 0 chr3 19110858 19110879 -198926279 + AT_rich Low_complexity Low_complexity 1 21 0 591 108 0 0 chr3 19111161 19111244 -198925914 + AluS SINE Alu 2 84 -228 253 286 214 0 chr3 19111342 19111468 -198925690 - MIR SINE MIR -109 153 1 343 320 300 2 chr3 19111811 19112301 -198924857 - L2 LINE L2 -23 3290 2637 593 120 54 0 chr3 19112529 19112621 -198924537 + U6 snRNA snRNA 8 104 -3 * 1253 181 127 39 chr3 19112619 19112957 -198924201 - Charlie1b DNA MER1_type -155 368 1 2374 67 7 10 chr3 19113959 19114259 -198922899 + AluY SINE Alu 1 299 -12 378 0 0 0 chr3 19114263 19114305 -198922853 + (TG)n Simple_repeat Simple_repeat 1 42 0 2244 81 0 36 chr3 19114882 19115191 -198921967 + AluY SINE Alu 1 298 -13 394 244 35 35 chr3 19115191 19115306 -198921852 - MIR SINE MIR -123 139 25 615 175 203 89 chr3 19116342 19116633 -198920525 - MER33 DNA MER1_type 0 324 1 558 121 0 0 chr3 19116660 19116743 -198920415 + AluY SINE Alu 217 299 -12 2351 89 3 3 chr3 19117280 19117582 -198919576 + AluY SINE Alu 1 302 -9 194 262 49 0 chr3 19117631 19117692 -198919466 + MIR SINE MIR 91 154 -108 528 297 10 62 chr3 19117716 19117819 -198919339 - MIR SINE MIR -15 247 159 2101 116 3 3 chr3 19117819 19118113 -198919045 - AluY SINE Alu -17 294 1 528 297 10 62 chr3 19118113 19118218 -198918940 - MIR SINE MIR -103 159 50 2494 110 0 21 chr3 19118303 19118324 -198918834 - L1PA14 LINE L1 -2 6159 6139 2327 93 14 0 chr3 19118324 19118614 -198918544 + AluSx SINE Alu 1 294 -18 2494 110 0 21 chr3 19118614 19118965 -198918193 - L1PA14 LINE L1 -22 6139 5795 582 262 48 27 chr3 19119011 19119198 -198917960 - L2 LINE L2 -6 3307 3117 468 157 95 48 chr3 19119209 19119250 -198917908 + MER44D DNA MER2_type 44 82 -2409 1957 150 7 0 chr3 19119250 19119544 -198917614 + AluSx SINE Alu 2 297 -15 2483 72 13 0 chr3 19119546 19119853 -198917305 + AluY SINE Alu 1 311 0 468 157 95 48 chr3 19119853 19119955 -198917203 + MER44D DNA MER2_type 82 467 -142 186 167 0 0 chr3 19120050 19120086 -198917072 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 264 283 57 38 chr3 19120747 19120906 -198916252 - MIR SINE MIR -35 227 66 2293 115 0 19 chr3 19121340 19121654 -198915504 - AluSx SINE Alu -2 310 3 311 256 87 29 chr3 19121736 19121908 -198915250 - L1MC4 LINE L1 -169 7873 7692 824 128 15 15 chr3 19121908 19122041 -198915117 - AluJo SINE Alu -173 139 7 1312 198 116 75 chr3 19122097 19122537 -198914621 - MLT1C LTR MaLR -4 463 6 418 260 120 41 chr3 19122543 19122556 -198914602 - L1MC4 LINE L1 -413 7629 7618 2229 125 0 3 chr3 19122556 19122860 -198914298 - AluSx SINE Alu -9 303 1 418 260 120 41 chr3 19122860 19123088 -198914070 - L1MC4 LINE L1 -424 7618 7369 233 222 49 49 chr3 19123267 19123348 -198913810 - L1MD3 LINE L1 -855 7140 7060 1833 151 13 38 chr3 19123361 19123679 -198913479 - AluJb SINE Alu 0 312 3 909 153 0 0 chr3 19123680 19123811 -198913347 - Tigger3(Golem) DNA MER2_type -2852 177 47 2526 137 59 23 chr3 19123848 19123873 -198913285 + Tigger3(Golem) DNA MER2_type 2540 2563 -466 755 154 0 0 chr3 19123873 19123990 -198913168 + FLAM_C SINE Alu 1 117 -16 2526 137 59 23 chr3 19123990 19124437 -198912721 + Tigger3(Golem) DNA MER2_type 2563 3029 0 308 302 63 63 chr3 19124739 19124928 -198912230 - MIR3 SINE MIR -13 195 7 939 9 0 0 chr3 19125260 19125365 -198911793 - AluYa5/8 SINE Alu -2 308 204 312 263 54 46 chr3 19125431 19125623 -198911535 - MLT1J1 LTR MaLR -7 443 243 * 476 252 19 0 chr3 19125618 19125725 -198911433 - MLT1J1 LTR MaLR -337 109 1 1688 181 3 0 chr3 19126255 19126542 -198910616 + AluJb SINE Alu 1 288 -24 2407 86 0 7 chr3 19127001 19127303 -198909855 + AluSg1 SINE Alu 1 300 -9 347 274 43 8 chr3 19128130 19128247 -198908911 - MIR SINE MIR -107 155 35 802 166 114 36 chr3 19128578 19128711 -198908447 - MER6B DNA MER2_type -656 209 55 2190 112 67 14 chr3 19128711 19129067 -198908091 - THE1C LTR MaLR 0 375 1 802 166 114 36 chr3 19129067 19129126 -198908032 - MER6B DNA MER2_type -810 55 2 198 235 51 71 chr3 19130783 19130881 -198906277 + MIR3 SINE MIR 112 207 -1 1862 155 16 29 chr3 19131195 19131505 -198905653 + AluJb SINE Alu 1 306 -6 306 291 45 0 chr3 19132214 19132348 -198904810 + MIR SINE MIR 53 192 -70 2258 57 4 11 chr3 19132361 19132642 -198904516 + AluY SINE Alu 23 301 -10 1080 110 43 0 chr3 19132643 19132807 -198904351 + AluSg/x SINE Alu 133 303 -9 2187 81 0 0 chr3 19133366 19133624 -198903534 - AluSq SINE Alu -29 284 27 385 266 91 15 chr3 19133659 19133849 -198903309 + MIR SINE MIR 37 239 -23 180 0 0 0 chr3 19134072 19134092 -198903066 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2275 94 0 10 chr3 19134537 19134835 -198902323 + AluSq SINE Alu 1 295 -18 1613 158 52 7 chr3 19134972 19135244 -198901914 + AluJb SINE Alu 27 310 -2 437 296 148 0 chr3 19135471 19135633 -198901525 + MIR SINE MIR 2 187 -75 1233 192 103 12 chr3 19136043 19136372 -198900786 - MER93a LTR ERV1 0 402 1 266 224 122 31 chr3 19136389 19136487 -198900671 - MARNA DNA Mariner -236 350 244 2291 109 0 0 chr3 19136948 19137251 -198899907 - AluSx SINE Alu -9 303 1 2395 104 3 0 chr3 19137593 19137902 -198899256 - AluSp SINE Alu -3 310 1 2213 108 7 19 chr3 19138409 19138716 -198898442 + AluSx SINE Alu 1 303 -9 2032 136 17 0 chr3 19139034 19139335 -198897823 - AluSx SINE Alu -6 306 1 192 40 0 0 chr3 19140528 19140553 -198896605 + (A)n Simple_repeat Simple_repeat 1 25 0 289 279 72 9 chr3 19140625 19140736 -198896422 + MIR SINE MIR 24 141 -67 2021 141 3 0 chr3 19141124 19141415 -198895743 + AluSx SINE Alu 2 293 -19 2062 122 0 23 chr3 19141422 19141726 -198895432 + AluSx SINE Alu 1 297 -15 2242 90 10 20 chr3 19142210 19142511 -198894647 + AluSq SINE Alu 1 298 -15 1549 161 57 11 chr3 19143630 19143909 -198893249 - AluSg SINE Alu -18 292 1 481 245 77 13 chr3 19144143 19144327 -198892831 + L1ME3A LINE L1 5959 6162 -2 316 130 0 0 chr3 19144339 19144393 -198892765 - L1MA3 LINE L1 0 6305 6252 2344 100 0 19 chr3 19144393 19144704 -198892454 - AluSx SINE Alu -7 305 1 274 136 0 0 chr3 19145142 19145186 -198891972 + Charlie4 DNA MER1_type 1864 1907 -54 252 247 103 41 chr3 19145582 19145679 -198891479 + MIR SINE MIR 82 184 -78 27 0 0 0 chr3 19147553 19147580 -198889578 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr3 19147711 19147731 -198889427 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 21 57 0 0 chr3 19150348 19150383 -198886775 + AT_rich Low_complexity Low_complexity 1 35 0 2047 145 17 0 chr3 19150779 19151076 -198886082 - AluSx SINE Alu -10 302 1 1152 149 123 29 chr3 19151783 19152059 -198885099 - AluJo SINE Alu 0 302 1 1619 146 83 88 chr3 19152106 19152278 -198884880 + L1MB7 LINE L1 5736 5907 -277 1893 175 27 0 chr3 19152278 19152616 -198884542 - MER7A DNA MER2_type 0 346 2 1619 146 83 88 chr3 19152616 19152729 -198884429 + L1MB7 LINE L1 5907 6019 -165 2267 158 41 14 chr3 19152729 19153147 -198884011 + MSTB1 LTR MaLR 4 432 0 1619 146 83 88 chr3 19153147 19153292 -198883866 + L1MB7 LINE L1 6019 6165 -19 1416 164 12 12 chr3 19153487 19153731 -198883427 + AluJo SINE Alu 50 293 -19 2255 112 0 10 chr3 19153737 19154042 -198883116 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 19154051 19154076 -198883082 + AT_rich Low_complexity Low_complexity 1 25 0 1967 154 3 3 chr3 19154276 19154575 -198882583 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 19154926 19154954 -198882204 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 27 0 0 0 chr3 19155625 19155652 -198881506 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr3 19155745 19155767 -198881391 + AT_rich Low_complexity Low_complexity 1 22 0 1725 145 74 0 chr3 19155965 19156234 -198880924 + AluJo SINE Alu 1 289 -23 2127 101 18 0 chr3 19156733 19157034 -198880124 + AluSx SINE Alu 1 306 0 347 241 11 11 chr3 19157035 19157122 -198880036 - Charlie5 DNA MER1_type -2521 91 5 458 276 46 7 chr3 19157181 19157333 -198879825 + MIR SINE MIR 98 255 -7 273 314 0 0 chr3 19157413 19157483 -198879675 - L2 LINE L2 -15 3298 3229 230 267 128 0 chr3 19157552 19157638 -198879520 + L2 LINE L2 3217 3313 0 995 180 0 11 chr3 19158674 19158852 -198878306 - FRAM SINE Alu -8 168 1 2080 146 3 0 chr3 19159010 19159318 -198877840 - AluSx SINE Alu -3 309 1 850 127 0 0 chr3 19160912 19161030 -198876128 - 5S rRNA rRNA -1 120 3 259 263 127 25 chr3 19161236 19161354 -198875804 + L1P LINE L1 4883 5012 -1134 828 192 46 9 chr3 19161389 19161608 -198875550 - AluJb SINE Alu -13 299 73 1764 130 4 29 chr3 19161722 19161828 -198875330 + AluSx SINE Alu 31 138 -174 2103 127 13 3 chr3 19161828 19162135 -198875023 + AluSx SINE Alu 1 310 -2 1764 130 4 29 chr3 19162135 19162305 -198874853 + AluSx SINE Alu 138 300 -12 907 130 0 8 chr3 19162399 19162530 -198874628 + FRAM SINE Alu 28 157 -19 680 115 34 115 chr3 19162802 19162950 -198874208 + AluJo SINE Alu 1 136 -176 2270 109 0 3 chr3 19163555 19163859 -198873299 - AluSc SINE Alu -6 303 1 2402 84 16 0 chr3 19164910 19165218 -198871940 - AluSq SINE Alu 0 313 1 868 158 11 92 chr3 19165769 19165953 -198871205 - AluJb SINE Alu -9 303 135 423 0 0 0 chr3 19165956 19166003 -198871155 + (TG)n Simple_repeat Simple_repeat 2 48 0 1186 103 0 27 chr3 19166150 19166334 -198870824 - AluY SINE Alu -17 294 116 1089 75 0 8 chr3 19166375 19166508 -198870650 - AluYb8 SINE Alu -186 132 1 2028 106 40 7 chr3 19166520 19166795 -198870363 - AluSq SINE Alu -23 290 7 2017 168 0 0 chr3 19166884 19167193 -198869965 + AluJb SINE Alu 1 309 -3 12366 48 6 5 chr3 19167294 19169606 -198867552 - L1PA5 LINE L1 0 6154 3844 1456 175 0 12 chr3 19169751 19170008 -198867150 + AluJb SINE Alu 43 296 -16 667 173 0 65 chr3 19170284 19170423 -198866735 + FLAM_C SINE Alu 1 130 -3 2163 78 32 11 chr3 19170494 19170776 -198866382 - AluSx SINE Alu -24 288 1 3638 160 17 8 chr3 19170798 19171436 -198865722 + L1MB4 LINE L1 5477 6120 -60 2051 147 0 0 chr3 19172113 19172406 -198864752 + AluSq SINE Alu 9 301 -12 2180 89 20 10 chr3 19172879 19173171 -198863987 + AluSp SINE Alu 1 295 -18 343 171 66 0 chr3 19173171 19173247 -198863911 - L1MB8 LINE L1 -57 6121 6041 228 35 0 0 chr3 19173248 19173277 -198863881 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 538 169 0 0 chr3 19174018 19174107 -198863051 - AluJ/FLAM SINE Alu -222 90 2 1740 175 3 7 chr3 19174384 19174681 -198862477 - AluJb SINE Alu -16 296 1 1026 112 35 231 chr3 19174683 19174850 -198862308 - Tigger2 DNA MER2_type -2175 543 345 2092 142 0 0 chr3 19174850 19175145 -198862013 - AluSx SINE Alu -17 295 1 1026 112 35 231 chr3 19175145 19175192 -198861966 - Tigger2 DNA MER2_type -2373 345 419 1855 108 59 35 chr3 19175192 19175479 -198861679 - AluSx SINE Alu -18 294 1 1026 112 35 231 chr3 19175479 19175610 -198861548 - Tigger2 DNA MER2_type -2298 420 265 2232 112 0 0 chr3 19175610 19175904 -198861254 - AluSg SINE Alu -16 294 1 1168 143 0 0 chr3 19175906 19176081 -198861077 - AluSg/x SINE Alu -7 305 131 398 19 0 19 chr3 19176081 19176133 -198861025 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2175 106 3 0 chr3 19176135 19176417 -198860741 - AluSq SINE Alu -30 283 1 2039 102 0 63 chr3 19176478 19176793 -198860365 - AluSx SINE Alu -17 295 1 182 289 0 0 chr3 19177370 19177422 -198859736 + MIR SINE MIR 204 255 -7 1463 159 24 75 chr3 19177811 19177971 -198859187 - AluJb SINE Alu -19 293 153 2369 93 0 3 chr3 19177971 19178281 -198858877 - AluSg SINE Alu -1 309 1 1463 159 24 75 chr3 19178281 19178415 -198858743 - AluJb SINE Alu -159 153 14 288 0 0 0 chr3 19178524 19178556 -198858602 + (TG)n Simple_repeat Simple_repeat 1 32 0 1616 175 4 7 chr3 19178561 19178830 -198858328 - AluJo SINE Alu -44 268 1 2366 97 3 0 chr3 19179003 19179313 -198857845 - AluSp SINE Alu -2 311 1 973 176 19 0 chr3 19179388 19179547 -198857611 - AluSg/x SINE Alu -18 292 131 1662 179 29 4 chr3 19180516 19180827 -198856331 - AluJb SINE Alu 0 318 1 2564 57 0 0 chr3 19180831 19181131 -198856027 - AluY SINE Alu -11 300 1 1505 152 5 0 chr3 19181243 19181460 -198855698 - AluSx SINE Alu -92 220 3 560 167 70 0 chr3 19181787 19181901 -198855257 + FAM SINE Alu 29 150 -35 1941 97 93 14 chr3 19182063 19182341 -198854817 + AluSq SINE Alu 1 300 -13 25 0 0 0 chr3 19182352 19182377 -198854781 + AT_rich Low_complexity Low_complexity 1 25 0 1516 195 0 14 chr3 19182384 19182681 -198854477 + AluJo SINE Alu 1 293 -19 2314 113 7 0 chr3 19182822 19183131 -198854027 + AluSx SINE Alu 2 312 0 2015 103 39 14 chr3 19183917 19184198 -198852960 + AluSq SINE Alu 1 288 -25 555 174 0 0 chr3 19184259 19184345 -198852813 + AluJ/FLAM SINE Alu 2 87 -225 1228 153 20 15 chr3 19184345 19184541 -198852617 + AluJo SINE Alu 21 217 -95 1465 199 30 0 chr3 19184857 19185123 -198852035 - AluSx SINE Alu -38 274 1 22 35 0 0 chr3 19185253 19185282 -198851876 + AT_rich Low_complexity Low_complexity 1 29 0 349 214 179 21 chr3 19185536 19185676 -198851482 - MIR SINE MIR -20 242 81 1768 165 13 16 chr3 19185859 19186162 -198850996 - AluJo SINE Alu -10 302 1 619 248 239 18 chr3 19186389 19186870 -198850288 - L2 LINE L2 0 3313 2717 1460 124 5 10 chr3 19186890 19187099 -198850059 - AluSg/x SINE Alu -18 292 85 816 179 35 7 chr3 19187119 19187264 -198849894 + AluJb SINE Alu 3 151 -161 219 186 34 34 chr3 19187288 19187347 -198849811 - L2 LINE L2 -1017 2297 2239 193 244 61 130 chr3 19187340 19187396 -198849762 + MIR SINE MIR 133 180 -82 * 1352 57 0 6 chr3 19187396 19187700 -198849458 + AluY SINE Alu 1 303 0 193 244 61 130 chr3 19187700 19187757 -198849401 + MIR SINE MIR 180 239 -23 387 363 41 7 chr3 19187758 19187904 -198849254 + MER91A DNA MER1_type 14 164 -32 27 49 0 0 chr3 19188084 19188125 -198849033 + AT_rich Low_complexity Low_complexity 1 41 0 2104 101 14 0 chr3 19188125 19188421 -198848737 + AluSq SINE Alu 1 300 -13 521 190 30 0 chr3 19188813 19188913 -198848245 + U13 snRNA snRNA 1 103 -1 401 233 22 11 chr3 19188945 19189035 -198848123 + HAL1 LINE L1 446 536 -1971 543 271 18 18 chr3 19189120 19189290 -198847868 + HAL1 LINE L1 744 913 -1594 1478 154 20 43 chr3 19189299 19189598 -198847560 + AluJb SINE Alu 21 312 0 949 247 211 36 chr3 19189600 19189733 -198847425 + HAL1 LINE L1 1296 1404 -1103 2203 85 13 7 chr3 19189733 19190040 -198847118 + AluSq SINE Alu 1 309 -4 949 247 211 36 chr3 19190040 19190225 -198846933 + HAL1 LINE L1 1404 1555 -952 2042 108 7 13 chr3 19190225 19190530 -198846628 - AluSx SINE Alu -9 303 1 949 247 211 36 chr3 19190530 19190680 -198846478 + HAL1 LINE L1 1555 1847 -660 240 233 27 27 chr3 19190763 19190836 -198846322 + GA-rich Low_complexity Low_complexity 4 76 0 347 280 25 3 chr3 19190970 19191120 -198846038 - MER113 DNA MER1_type? 0 521 316 1927 138 24 0 chr3 19191130 19191428 -198845730 + AluSx SINE Alu 8 312 0 2040 124 3 0 chr3 19191434 19191740 -198845418 + AluSq SINE Alu 1 307 -6 2373 62 0 0 chr3 19191771 19192063 -198845095 + AluY SINE Alu 1 292 -19 2187 110 0 0 chr3 19192083 19192384 -198844774 + AluSx SINE Alu 1 301 -11 255 196 89 0 chr3 19192385 19192441 -198844717 + AluSp SINE Alu 136 196 -107 524 158 32 21 chr3 19192441 19192536 -198844622 + FLAM_C SINE Alu 35 130 -13 1979 149 0 3 chr3 19192603 19192911 -198844247 + AluJb SINE Alu 1 307 -5 271 373 0 0 chr3 19193068 19193170 -198843988 + MIR SINE MIR 141 242 -20 896 132 14 0 chr3 19193452 19193596 -198843562 - AluSx SINE Alu -118 194 49 1753 126 8 0 chr3 19193690 19193951 -198843207 + AluSx SINE Alu 42 304 -8 576 282 69 46 chr3 19193964 19194329 -198842829 + L2 LINE L2 2734 3311 -2 798 97 132 0 chr3 19194836 19194950 -198842208 + AluSq/x SINE Alu 5 133 -179 901 47 0 0 chr3 19195016 19195123 -198842035 - L1P LINE L1 -2280 3866 3760 930 196 41 5 chr3 19195290 19195510 -198841648 - MER50 LTR ERV1 -14 720 493 289 172 0 17 chr3 19195502 19195560 -198841598 - AluJo SINE Alu -159 143 87 * 2045 138 105 5 chr3 19195561 19195932 -198841226 - L1MC1 LINE L1 -228 6105 5698 932 167 139 0 chr3 19195937 19196152 -198841006 - L1MB8 LINE L1 -140 6038 5794 1003 194 38 0 chr3 19196157 19196368 -198840790 - Tigger7 DNA MER2_type -1 2490 2272 2194 106 3 0 chr3 19196369 19196680 -198840478 + AluSp SINE Alu 1 312 -1 2077 96 0 0 chr3 19197214 19197494 -198839664 + AluSx SINE Alu 21 300 -12 1604 158 0 55 chr3 19198352 19198662 -198838496 - AluJb SINE Alu -19 293 1 1728 122 4 0 chr3 19198743 19198990 -198838168 + AluSg SINE Alu 1 248 -62 1889 135 13 10 chr3 19199470 19199781 -198837377 + AluSx SINE Alu 1 312 0 818 140 0 44 chr3 19199952 19200088 -198837070 + FLAM_C SINE Alu 2 131 -2 1633 151 3 43 chr3 19200093 19200417 -198836741 + AluJo SINE Alu 2 312 0 23 0 0 0 chr3 19200435 19200458 -198836700 + AT_rich Low_complexity Low_complexity 1 23 0 262 278 176 56 chr3 19200637 19200853 -198836305 + L2 LINE L2 2837 3078 -194 191 280 133 0 chr3 19202580 19202655 -198834503 + MIR SINE MIR 55 139 -123 374 335 42 11 chr3 19202784 19202975 -198834183 + L1ME LINE L1 5599 5795 -326 2289 74 0 0 chr3 19203057 19203356 -198833802 + AluSx SINE Alu 14 312 0 1283 87 0 6 chr3 19203361 19203533 -198833625 + AluSp SINE Alu 131 301 -12 2122 92 3 23 chr3 19203538 19203676 -198833482 + AluSx SINE Alu 1 140 -172 2419 60 0 0 chr3 19203676 19203975 -198833183 + AluY SINE Alu 1 299 -12 2122 92 3 23 chr3 19203975 19204142 -198833016 + AluSx SINE Alu 140 300 -12 191 299 234 0 chr3 19204253 19204360 -198832798 - L2 LINE L2 -22 3291 3160 1249 200 43 37 chr3 19204369 19204669 -198832489 + AluJo SINE Alu 1 302 0 957 98 0 0 chr3 19204736 19204869 -198832289 + AluY SINE Alu 1 133 -178 2465 52 0 10 chr3 19204886 19205194 -198831964 + AluY SINE Alu 1 305 -6 1994 101 25 0 chr3 19205251 19205556 -198831602 + AluSp SINE Alu 1 312 0 270 184 197 0 chr3 19205557 19205633 -198831525 + MIR SINE MIR 136 226 -36 * 785 279 40 8 chr3 19205626 19205873 -198831285 + MIR SINE MIR 8 262 0 2670 10 0 0 chr3 19206076 19206375 -198830783 + AluY SINE Alu 11 309 -2 2412 156 66 0 chr3 19206434 19206890 -198830268 - L1MB5 LINE L1 0 6174 5689 2216 112 0 0 chr3 19207068 19207372 -198829786 + AluSx SINE Alu 1 304 -8 2390 68 0 10 chr3 19207383 19207691 -198829467 + AluY SINE Alu 1 305 -6 238 265 0 44 chr3 19207849 19207917 -198829241 - MIR SINE MIR -149 113 49 1430 177 0 4 chr3 19207966 19208215 -198828943 + AluJo SINE Alu 11 258 -54 2193 87 7 0 chr3 19208234 19208532 -198828626 + AluSp SINE Alu 1 300 -13 1048 265 146 10 chr3 19208543 19208954 -198828204 - L2 LINE L2 -19 3294 2828 334 281 69 50 chr3 19209158 19209196 -198827962 - L2 LINE L2 -239 3033 2997 2941 150 87 48 chr3 19209196 19209633 -198827525 - LTR26E LTR ERV1 0 622 154 1684 159 10 17 chr3 19209633 19209934 -198827224 + AluJb SINE Alu 1 299 -13 2941 150 87 48 chr3 19209934 19210095 -198827063 - LTR26E LTR ERV1 -468 154 1 334 281 69 50 chr3 19210095 19210216 -198826942 - L2 LINE L2 -275 2997 2871 1722 129 3 28 chr3 19210484 19210770 -198826388 + AluSx SINE Alu 1 279 -33 345 315 0 22 chr3 19211035 19211124 -198826034 - L1MC4 LINE L1 -1342 6700 6614 1570 178 3 21 chr3 19211206 19211492 -198825666 - AluJo SINE Alu -31 281 1 861 295 38 26 chr3 19211584 19211930 -198825228 - L1ME LINE L1 -374 5747 5398 2036 95 50 0 chr3 19211933 19212216 -198824942 - AluSx SINE Alu -15 297 1 1093 91 0 62 chr3 19212408 19212584 -198824574 + AluSg SINE Alu 14 178 -132 4628 127 19 19 chr3 19213053 19213825 -198823333 - LTR5 LTR ERVK 0 969 198 486 151 0 0 chr3 19213985 19214058 -198823100 - AluS SINE Alu -235 77 5 1449 140 0 0 chr3 19214173 19214395 -198822763 + AluSg/x SINE Alu 83 304 -6 1069 165 90 5 chr3 19214395 19214607 -198822551 + AluSx SINE Alu 1 230 -82 1811 119 4 0 chr3 19214646 19214906 -198822252 - AluSx SINE Alu -11 301 41 295 233 0 14 chr3 19214910 19214983 -198822175 + MLT1C LTR MaLR 66 137 -330 1432 181 0 24 chr3 19215010 19215297 -198821861 - AluJb SINE Alu -32 280 1 807 252 94 0 chr3 19215319 19215573 -198821585 + MLT1C LTR MaLR 190 467 0 1137 415 0 29 chr3 19215738 19216049 -198821109 + AluJb SINE Alu 1 302 0 732 215 7 7 chr3 19216050 19216185 -198820973 - MER5A DNA MER1_type -52 137 3 2325 80 0 0 chr3 19216335 19216635 -198820523 - AluY SINE Alu -11 300 1 261 315 14 0 chr3 19216704 19216777 -198820381 - L1ME LINE L1 -476 5645 5572 1608 147 4 12 chr3 19216802 19217061 -198820097 - AluSq SINE Alu -56 257 1 243 143 0 24 chr3 19217061 19217103 -198820055 + MSTA LTR MaLR 388 428 0 317 138 17 0 chr3 19217103 19217161 -198819997 - HSMAR2 DNA Mariner -1242 60 2 1047 192 22 14 chr3 19217161 19217396 -198819762 - L1M4 LINE L1 -451 5713 5470 1254 221 61 0 chr3 19217794 19218088 -198819070 - AluJb SINE Alu 0 312 1 1334 224 14 0 chr3 19218191 19218472 -198818686 + AluJo SINE Alu 3 287 -25 1615 125 4 47 chr3 19218554 19218647 -198818511 + AluSx SINE Alu 34 129 -183 1749 126 63 0 chr3 19218647 19218916 -198818242 + AluSx SINE Alu 1 286 -26 1615 125 4 47 chr3 19218916 19218933 -198818225 + AluSx SINE Alu 129 145 -167 2265 52 42 0 chr3 19218933 19219220 -198817938 + AluY SINE Alu 1 299 -12 1615 125 4 47 chr3 19219220 19219387 -198817771 + AluSx SINE Alu 145 300 -12 200 383 0 0 chr3 19219498 19219558 -198817600 - L2 LINE L2 -22 3291 3232 547 233 100 104 chr3 19219717 19219996 -198817162 + MER45C DNA AcHobo 102 379 -574 1272 221 144 89 chr3 19220026 19220381 -198816777 + MER45C DNA AcHobo 448 782 -799 1985 127 6 19 chr3 19220381 19220697 -198816461 - AluSx SINE Alu 0 312 1 1272 221 144 89 chr3 19220697 19220719 -198816439 + MER45C DNA AcHobo 782 801 -780 2248 98 0 3 chr3 19220719 19221024 -198816134 - AluSx SINE Alu -8 304 1 1272 221 144 89 chr3 19221024 19221083 -198816075 + MER45C DNA AcHobo 801 909 -44 886 142 0 7 chr3 19221083 19221224 -198815934 - FLAM_C SINE Alu -3 140 1 2269 93 0 7 chr3 19221236 19221538 -198815620 - AluSg SINE Alu -10 300 1 392 132 0 0 chr3 19221539 19221592 -198815566 + MER45C DNA AcHobo 901 953 0 360 327 9 0 chr3 19221823 19221933 -198815225 - MLT1H1 LTR MaLR -250 305 195 683 100 18 9 chr3 19222097 19222207 -198814951 + AluSp/q SINE Alu 199 309 -4 990 229 134 42 chr3 19222207 19222392 -198814766 + HAL1 LINE L1 1481 1648 -859 2042 108 7 13 chr3 19222392 19222697 -198814461 - AluSx SINE Alu -9 303 1 990 229 134 42 chr3 19222697 19222847 -198814311 + HAL1 LINE L1 1648 1847 -660 240 233 27 27 chr3 19222930 19223003 -198814155 + GA-rich Low_complexity Low_complexity 4 76 0 347 280 25 3 chr3 19223137 19223287 -198813871 - MER113 DNA MER1_type? 0 521 316 1927 138 24 0 chr3 19223297 19223595 -198813563 + AluSx SINE Alu 8 312 0 1994 134 3 0 chr3 19223601 19223900 -198813258 + AluSx SINE Alu 1 300 -12 1745 139 0 55 chr3 19224758 19225068 -198812090 - AluJb SINE Alu -19 293 1 1287 93 6 6 chr3 19225073 19225255 -198811903 - AluSp SINE Alu -12 301 120 24 0 0 0 chr3 19225255 19225279 -198811879 + AT_rich Low_complexity Low_complexity 1 24 0 2096 110 7 3 chr3 19225981 19226290 -198810868 + AluSx SINE Alu 1 310 -2 963 141 6 24 chr3 19226290 19226460 -198810698 + AluSg/x SINE Alu 134 300 -12 852 130 0 8 chr3 19226554 19226685 -198810473 + FRAM SINE Alu 28 157 -19 685 115 34 115 chr3 19226957 19227105 -198810053 + AluJo SINE Alu 1 136 -176 2143 109 0 3 chr3 19227710 19228014 -198809144 - AluSc SINE Alu -6 303 1 2285 90 0 0 chr3 19229064 19229375 -198807783 - AluY SINE Alu 0 311 1 975 119 0 0 chr3 19229377 19229511 -198807647 - AluSq/x SINE Alu -179 134 1 308 200 15 15 chr3 19229511 19229576 -198807582 + MLT1H1 LTR MaLR 489 553 -2 538 273 14 0 chr3 19229578 19229717 -198807441 - LTR33 LTR ERVL -379 142 2 749 313 197 8 chr3 19229722 19230204 -198806954 - L2 LINE L2 -808 2506 1934 790 103 86 0 chr3 19230205 19230321 -198806837 + AluJb SINE Alu 2 127 -185 213 39 0 0 chr3 19230324 19230350 -198806808 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 969 258 27 27 chr3 19230464 19230759 -198806399 + L1ME LINE L1 5319 5613 -557 874 273 73 11 chr3 19230772 19231047 -198806111 - LTR16A LTR ERVL -12 438 147 2007 79 4 0 chr3 19231421 19231686 -198805472 + AluSg SINE Alu 28 293 -17 371 267 96 7 chr3 19231770 19231905 -198805253 + MIR SINE MIR 116 262 0 2128 97 10 0 chr3 19231992 19232282 -198804876 + AluSp SINE Alu 1 293 -20 2426 50 0 10 chr3 19232347 19232645 -198804513 + AluY SINE Alu 4 298 -13 1848 143 3 3 chr3 19233003 19233297 -198803861 + AluSx SINE Alu 1 294 -18 2156 90 0 0 chr3 19233303 19233606 -198803552 + AluY SINE Alu 2 304 0 2028 87 3 51 chr3 19233611 19233923 -198803235 + AluSx SINE Alu 1 297 -15 29 28 0 0 chr3 19234017 19234053 -198803105 + AT_rich Low_complexity Low_complexity 1 36 0 294 239 35 35 chr3 19234421 19234534 -198802624 - MLT1K LTR MaLR -29 559 447 1019 113 0 0 chr3 19234591 19234750 -198802408 - AluY SINE Alu -10 301 143 310 195 146 168 chr3 19235222 19235319 -198801839 - MER5A DNA MER1_type -1 188 90 1982 137 0 0 chr3 19235319 19235612 -198801546 - AluSx SINE Alu -19 293 1 310 195 146 168 chr3 19235612 19235623 -198801535 - MER5A DNA MER1_type -99 90 80 186 43 0 0 chr3 19235623 19235646 -198801512 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2147 68 0 0 chr3 19235650 19235929 -198801229 - AluY SINE Alu -32 279 1 310 195 146 168 chr3 19235929 19235999 -198801159 - MER5A DNA MER1_type -112 77 8 250 284 114 0 chr3 19236032 19236120 -198801038 + MIR SINE MIR 73 170 -92 895 128 0 0 chr3 19236162 19236295 -198800863 + AluJb SINE Alu 1 133 -179 2195 79 0 0 chr3 19236296 19236586 -198800572 + AluY SINE Alu 1 290 -21 1908 89 58 21 chr3 19236610 19236901 -198800257 + AluY SINE Alu 1 302 -9 2058 126 0 0 chr3 19236907 19237208 -198799950 + AluSx SINE Alu 1 301 -11 181 211 0 0 chr3 19237231 19237269 -198799889 + L2 LINE L2 3223 3260 -12 545 205 9 27 chr3 19237654 19237766 -198799392 + MIR SINE MIR 20 129 -133 * 640 292 99 10 chr3 19237757 19237959 -198799199 - MIR SINE MIR -41 221 2 934 142 34 0 chr3 19238042 19238190 -198798968 - FRAM SINE Alu -1 175 23 189 195 0 0 chr3 19238219 19238260 -198798898 + T-rich Low_complexity Low_complexity 1 41 0 561 65 0 0 chr3 19238284 19238363 -198798795 - L1PA8 LINE L1 -21 6140 6034 708 229 7 0 chr3 19238370 19238510 -198798648 - FLAM_C SINE Alu -1 142 2 448 133 0 0 chr3 19238510 19238591 -198798567 + AluJ/FRAM SINE Alu 223 303 0 668 329 24 12 chr3 19238594 19238843 -198798315 + MIR SINE MIR 1 252 -10 2312 119 0 3 chr3 19239042 19239353 -198797805 + AluSx SINE Alu 1 310 -2 210 320 82 65 chr3 19239802 19240096 -198797062 - L2 LINE L2 -54 3218 2920 1190 184 124 145 chr3 19240116 19240654 -198796504 + MLT1F LTR MaLR 16 542 0 402 269 167 30 chr3 19240838 19241072 -198796086 + MLT1K LTR MaLR 73 338 -250 2286 98 10 3 chr3 19241082 19241387 -198795771 - AluSx SINE Alu -5 307 1 1059 76 0 0 chr3 19241421 19241553 -198795605 + AluY SINE Alu 1 132 -179 1234 104 0 22 chr3 19241594 19241777 -198795381 + AluY SINE Alu 116 294 -17 886 186 68 77 chr3 19241892 19241924 -198795234 + AluJb SINE Alu 86 117 -195 441 0 0 0 chr3 19241924 19241973 -198795185 + (CA)n Simple_repeat Simple_repeat 2 50 0 886 186 68 77 chr3 19241973 19242160 -198794998 + AluJb SINE Alu 117 303 -9 1396 89 28 0 chr3 19242711 19242891 -198794267 + AluSq SINE Alu 1 185 -128 473 232 174 25 chr3 19243110 19243348 -198793810 + MLT1H1 LTR MaLR 275 522 -33 268 286 0 11 chr3 19243360 19243451 -198793707 + MLT1H1-int LTR MaLR 1 90 -1645 2037 154 12 0 chr3 19243496 19243829 -198793329 - LTR26B LTR ERV1 -1 530 191 2470 70 0 3 chr3 19243829 19244128 -198793030 - AluSx SINE Alu -14 298 1 1312 96 0 0 chr3 19244138 19244304 -198792854 - AluSp SINE Alu -8 305 140 700 63 0 4 chr3 19244309 19244454 -198792704 - LTR26B LTR ERV1 -327 204 4 262 301 89 56 chr3 19244455 19244619 -198792539 + MLT1H1-int LTR MaLR 309 487 -884 2433 86 3 0 chr3 19244619 19244922 -198792236 - AluSp SINE Alu -9 304 1 262 301 89 56 chr3 19244922 19245026 -198792132 + MLT1H1-int LTR MaLR 487 586 -785 807 214 0 36 chr3 19245127 19245295 -198791863 + FRAM SINE Alu 2 163 -13 2207 122 0 3 chr3 19245642 19245936 -198791222 - AluSg SINE Alu -15 295 3 285 254 75 40 chr3 19246299 19246472 -198790686 + MLT1H1-int LTR MaLR 1556 1734 -1 435 228 91 158 chr3 19246473 19246989 -198790169 + MLT1H1 LTR MaLR 1 550 -5 180 0 0 0 chr3 19246989 19247009 -198790149 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1897 156 11 0 chr3 19247016 19247161 -198789997 - AluSx SINE Alu -27 285 143 2410 92 0 0 chr3 19247161 19247467 -198789691 - AluY SINE Alu -5 306 1 1897 156 11 0 chr3 19247467 19247603 -198789555 - AluSx SINE Alu -169 143 1 435 228 91 158 chr3 19247603 19247668 -198789490 + MLT1H1 LTR MaLR 485 553 -2 508 266 14 0 chr3 19247670 19247809 -198789349 - LTR33 LTR ERVL -379 142 2 426 246 122 2 chr3 19248036 19248209 -198788949 + MIR SINE MIR 2 204 -58 1942 151 3 3 chr3 19248228 19248519 -198788639 - AluJb SINE Alu -21 291 1 610 194 24 77 chr3 19248648 19248699 -198788459 - MIR SINE MIR -10 252 200 2538 34 45 0 chr3 19248699 19248990 -198788168 - AluY SINE Alu -7 304 1 610 194 24 77 chr3 19248990 19249108 -198788050 - MIR SINE MIR -62 200 92 605 193 42 0 chr3 19249179 19249298 -198787860 - FLAM_A SINE Alu -9 124 1 387 269 55 80 chr3 19249301 19249544 -198787614 - L1MC/D LINE L1 -743 5403 5249 2015 122 27 0 chr3 19249544 19249839 -198787319 - AluSq SINE Alu -10 303 1 387 269 55 80 chr3 19249839 19249988 -198787170 - L1MC/D LINE L1 -897 5249 5098 2032 96 60 7 chr3 19250060 19250341 -198786817 - AluSg SINE Alu -14 296 1 2576 65 0 0 chr3 19250346 19250655 -198786503 - AluY SINE Alu -2 309 1 961 128 0 0 chr3 19250656 19250789 -198786369 - AluJb SINE Alu -179 133 1 251 284 114 0 chr3 19250831 19250919 -198786239 - MIR SINE MIR -92 170 73 333 199 149 149 chr3 19250952 19251022 -198786136 + MER5A DNA MER1_type 8 77 -112 2270 74 0 0 chr3 19251022 19251329 -198785829 + AluY SINE Alu 1 307 0 333 199 149 149 chr3 19251329 19251340 -198785818 + MER5A DNA MER1_type 77 87 -102 2123 137 0 0 chr3 19251340 19251633 -198785525 + AluSx SINE Alu 1 293 -19 333 199 149 149 chr3 19251633 19251730 -198785428 + MER5A DNA MER1_type 86 188 -1 621 207 9 0 chr3 19252096 19252207 -198784951 + MER81 DNA DNA 3 114 0 540 242 27 34 chr3 19252258 19252407 -198784751 + MER5B DNA MER1_type 1 148 -30 297 0 0 0 chr3 19252408 19252441 -198784717 + (TG)n Simple_repeat Simple_repeat 2 34 0 2207 100 0 0 chr3 19252442 19252721 -198784437 - AluSx SINE Alu -33 279 1 28 0 0 0 chr3 19252728 19252756 -198784402 + AT_rich Low_complexity Low_complexity 1 28 0 338 232 14 0 chr3 19252775 19252844 -198784314 + L2 LINE L2 3232 3301 -12 339 266 19 19 chr3 19252844 19252998 -198784160 + L1ME4a LINE L1 5968 6121 0 191 333 0 26 chr3 19253660 19253738 -198783420 + MIR3 SINE MIR 112 187 -21 522 330 176 9 chr3 19254103 19254558 -198782600 - L2 LINE L2 -850 2464 1934 822 103 86 0 chr3 19254558 19254675 -198782483 + AluJb SINE Alu 1 127 -185 213 39 0 0 chr3 19254678 19254704 -198782454 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 941 263 22 22 chr3 19254818 19255092 -198782066 + L1ME LINE L1 5319 5585 -577 788 276 73 11 chr3 19255126 19255401 -198781757 - LTR16A LTR ERVL -12 438 147 1683 181 36 26 chr3 19255573 19255983 -198781175 - AluJo SINE Alu 0 413 1 761 320 71 43 chr3 19256088 19256650 -198780508 - ERVL LTR ERVL -439 5325 4748 194 0 39 0 chr3 19256846 19256872 -198780286 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1746 154 28 21 chr3 19256874 19257160 -198779998 - AluSx SINE Alu -24 288 1 447 301 53 73 chr3 19258062 19258404 -198778754 - ERVL LTR ERVL -1140 4624 4290 24 0 0 0 chr3 19258404 19258428 -198778730 + AT_rich Low_complexity Low_complexity 1 24 0 1140 341 61 31 chr3 19258452 19259639 -198777519 - ERVL LTR ERVL -1339 4146 3007 1377 201 29 4 chr3 19259644 19259922 -198777236 + AluSq SINE Alu 1 285 -28 669 87 0 78 chr3 19259983 19260086 -198777072 - AluSg SINE Alu -214 96 2 2276 77 0 46 chr3 19260098 19260421 -198776737 - AluY SINE Alu -3 308 1 1299 102 0 0 chr3 19260431 19260597 -198776561 - AluSp SINE Alu -8 305 140 700 63 0 4 chr3 19260602 19260747 -198776411 - LTR26B LTR ERV1 -327 204 4 251 298 78 59 chr3 19260748 19260912 -198776246 + MLT1-int LTR MaLR 309 481 -890 2324 102 3 3 chr3 19260912 19261216 -198775942 - AluSp SINE Alu -9 304 1 251 298 78 59 chr3 19261216 19261306 -198775852 + MLT1-int LTR MaLR 481 568 -803 3116 62 14 39 chr3 19262632 19263071 -198774087 + SVA Other Other 5 432 -954 1272 78 0 0 chr3 19263071 19263224 -198773934 - AluSg SINE Alu -157 153 1 180 111 0 0 chr3 19263686 19263713 -198773445 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 752 172 39 0 chr3 19263743 19263871 -198773287 + FRAM SINE Alu 23 155 -21 632 292 99 10 chr3 19263975 19264177 -198772981 + MIR SINE MIR 2 221 -41 526 214 9 27 chr3 19264168 19264280 -198772878 - MIR SINE MIR -133 129 20 * 181 211 0 0 chr3 19264665 19264703 -198772455 - L2 LINE L2 -12 3260 3223 2205 126 0 3 chr3 19264726 19265028 -198772130 - AluSx SINE Alu -11 301 1 433 96 14 0 chr3 19265028 19265101 -198772057 + L1MB7 LINE L1 6111 6184 0 457 265 45 8 chr3 19265833 19265965 -198771193 - MIR3 SINE MIR -12 196 60 252 143 0 0 chr3 19266064 19266106 -198771052 - MIR SINE MIR -174 88 47 1021 155 14 0 chr3 19266912 19267060 -198770098 - FRAM SINE Alu -18 158 9 260 378 41 0 chr3 19267066 19267164 -198769994 + L2 LINE L2 3136 3237 -35 533 250 100 6 chr3 19267172 19267332 -198769826 - MIR SINE MIR -1 261 87 2211 104 0 19 chr3 19267332 19267648 -198769510 + AluSg SINE Alu 1 310 0 2119 136 6 22 chr3 19267991 19268339 -198768819 - AluJb SINE Alu 0 343 1 1101 76 0 0 chr3 19268364 19268495 -198768663 - AluSg SINE Alu -179 131 1 29 0 0 0 chr3 19268502 19268531 -198768627 + AT_rich Low_complexity Low_complexity 1 29 0 2145 120 0 14 chr3 19268537 19268829 -198768329 - AluSx SINE Alu -24 288 1 463 178 9 9 chr3 19269472 19269579 -198767579 + CT-rich Low_complexity Low_complexity 4 110 0 272 275 90 39 chr3 19269935 19270074 -198767084 - L1MC5 LINE L1 -105 7856 7699 2142 133 3 0 chr3 19270074 19270367 -198766791 - AluSx SINE Alu -18 294 1 272 275 90 39 chr3 19270367 19270460 -198766698 - L1MC5 LINE L1 -262 7699 7612 271 189 44 22 chr3 19270708 19270798 -198766360 + MER113 DNA MER1_type? 8 99 -422 2450 57 13 3 chr3 19270800 19271100 -198766058 - AluY SINE Alu -8 303 1 813 191 28 51 chr3 19271104 19271282 -198765876 - MER5A DNA MER1_type -9 180 7 393 284 89 35 chr3 19271315 19271484 -198765674 - L3 LINE CR1 -99 1478 1301 978 161 63 74 chr3 19271643 19271711 -198765447 - MER33 DNA MER1_type -2307 278 211 1715 168 13 30 chr3 19271711 19272014 -198765144 + AluJo SINE Alu 1 298 -14 978 161 63 74 chr3 19272014 19272241 -198764917 - MER33 DNA MER1_type -2374 211 1 1493 224 11 35 chr3 19272461 19272726 -198764432 - L1M4 LINE L1 -743 5403 5133 2293 97 0 0 chr3 19272726 19273044 -198764114 + AluSc SINE Alu 1 309 0 1493 224 11 35 chr3 19273044 19273187 -198763971 - L1M4 LINE L1 -1013 5133 5004 1803 162 53 3 chr3 19273187 19273471 -198763687 - AluSx SINE Alu -14 298 1 1493 224 11 35 chr3 19273471 19273512 -198763646 - L1M4 LINE L1 -1142 5004 4964 2263 93 3 40 chr3 19273560 19273884 -198763274 - AluSx SINE Alu 0 312 1 2289 90 0 0 chr3 19273889 19274192 -198762966 - AluY SINE Alu 0 304 2 2020 139 3 3 chr3 19274198 19274492 -198762666 - AluSx SINE Alu -18 294 1 2490 60 0 10 chr3 19274850 19275148 -198762010 - AluY SINE Alu -13 298 4 2270 97 10 0 chr3 19275213 19275503 -198761655 - AluSp SINE Alu -20 293 1 1426 40 12 0 chr3 19275744 19275917 -198761241 + AluY SINE Alu 128 302 -9 263 239 35 35 chr3 19275974 19276087 -198761071 + MLT1K LTR MaLR 447 559 -29 29 28 0 0 chr3 19276455 19276491 -198760667 + AT_rich Low_complexity Low_complexity 1 36 0 2430 64 3 3 chr3 19276585 19276880 -198760278 - AluY SINE Alu -16 295 1 514 293 108 14 chr3 19276880 19277172 -198759986 + L2 LINE L2 2924 3243 -70 996 168 15 30 chr3 19277195 19277398 -198759760 - MER3 DNA MER1_type 0 209 10 2362 68 20 7 chr3 19277464 19277757 -198759401 - AluY SINE Alu -14 297 1 1827 163 0 14 chr3 19277759 19278054 -198759104 - AluJb SINE Alu -21 291 1 931 207 5 11 chr3 19278134 19278322 -198758836 - MER20 DNA MER1_type 0 219 33 934 239 31 28 chr3 19278508 19278797 -198758361 + AluSx SINE Alu 2 291 -11 261 197 0 0 chr3 19278802 19278878 -198758280 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 2289 106 0 0 chr3 19279013 19279305 -198757853 + AluSx SINE Alu 21 312 0 22 0 0 0 chr3 19279624 19279646 -198757512 + GC_rich Low_complexity Low_complexity 1 22 0 234 326 21 11 chr3 19279972 19280067 -198757091 - Charlie8 DNA MER1_type -2301 116 21 265 234 0 0 chr3 19281058 19281122 -198756036 + L1ME4a LINE L1 5683 5746 -2062 244 281 74 25 chr3 19281394 19281515 -198755643 + L1ME4a LINE L1 5979 6105 -16 2199 112 3 16 chr3 19281591 19281903 -198755255 + AluSx SINE Alu 1 308 -4 1671 153 66 20 chr3 19281908 19282396 -198754762 + L1MB3 LINE L1 5577 6143 -40 2216 120 0 13 chr3 19282396 19282705 -198754453 + AluSx SINE Alu 1 305 -7 502 204 0 0 chr3 19282719 19282812 -198754346 + FLAM_A SINE Alu 16 108 -34 2136 112 16 7 chr3 19282812 19283115 -198754043 - AluSq SINE Alu -7 306 1 671 82 48 0 chr3 19283180 19283327 -198753831 + GA-rich Low_complexity Low_complexity 1 154 0 2497 70 0 0 chr3 19286126 19286425 -198750733 + AluY SINE Alu 1 299 -12 184 154 39 0 chr3 19286735 19286787 -198750371 + CT-rich Low_complexity Low_complexity 2 55 0 791 216 39 39 chr3 19287155 19287363 -198749795 + MIR SINE MIR 51 258 -4 2332 96 0 7 chr3 19287507 19287809 -198749349 - AluSx SINE Alu -4 308 9 182 297 55 41 chr3 19287901 19288046 -198749112 + L2 LINE L2 2824 2970 -302 852 224 175 32 chr3 19288076 19288103 -198749055 - L2 LINE L2 0 3313 3291 1963 147 17 0 chr3 19288103 19288395 -198748763 + AluJo SINE Alu 1 297 -15 852 224 175 32 chr3 19288395 19288805 -198748353 - L2 LINE L2 -22 3291 2795 911 149 34 0 chr3 19288927 19289075 -198748083 - FRAM SINE Alu -1 175 23 198 191 0 0 chr3 19289104 19289146 -198748012 + T-rich Low_complexity Low_complexity 1 42 0 546 80 0 0 chr3 19289166 19289245 -198747913 - L1PA8 LINE L1 -21 6140 6034 715 227 7 0 chr3 19289252 19289393 -198747765 - FLAM_C SINE Alu 0 143 2 448 133 0 0 chr3 19289393 19289474 -198747684 + AluJ/FRAM SINE Alu 223 303 0 684 325 24 12 chr3 19289477 19289726 -198747432 + MIR SINE MIR 1 252 -10 2044 121 10 13 chr3 19289925 19290223 -198746935 + AluSx SINE Alu 1 297 -15 579 234 62 45 chr3 19291018 19291204 -198745954 + MIR SINE MIR 4 195 -62 270 0 0 0 chr3 19291204 19291234 -198745924 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2138 112 3 7 chr3 19291240 19291535 -198745623 - AluY SINE Alu -17 294 1 2057 147 55 24 chr3 19291535 19291956 -198745202 + L1MC3 LINE L1 5397 5830 -1955 2742 133 171 20 chr3 19292000 19292549 -198744609 - MER67B LTR ERV1 -22 639 8 231 36 0 0 chr3 19292550 19292578 -198744580 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 2148 114 10 0 chr3 19292597 19292886 -198744272 - AluSq SINE Alu -21 292 1 2275 82 0 3 chr3 19292923 19293215 -198743943 - AluY SINE Alu -20 291 1 2122 190 11 25 chr3 19293216 19293659 -198743499 + L1MC3 LINE L1 5845 6281 -1504 834 224 140 89 chr3 19293661 19294156 -198743002 - MER66A LTR ERV1 -10 601 104 2929 180 47 0 chr3 19294156 19294712 -198742446 + L1MC3 LINE L1 6276 6857 -928 270 0 0 0 chr3 19294712 19294742 -198742416 + (CA)n Simple_repeat Simple_repeat 2 31 0 820 191 0 7 chr3 19294851 19294987 -198742171 - AluJo SINE Alu -177 135 1 581 254 213 1 chr3 19295107 19295420 -198741738 + MLT1G1 LTR MaLR 1 336 -254 385 83 0 273 chr3 19295618 19295672 -198741486 - MER45 DNA AcHobo 0 1581 1514 2432 89 0 7 chr3 19295672 19295974 -198741184 + AluSg SINE Alu 1 300 -10 385 83 0 273 chr3 19295974 19295986 -198741172 - MER45 DNA AcHobo -67 1514 1501 917 125 0 22 chr3 19295986 19296122 -198741036 + FLAM_C SINE Alu 1 133 0 385 83 0 273 chr3 19296122 19296186 -198740972 - MER45 DNA AcHobo -80 1501 1486 2446 88 0 7 chr3 19296186 19296493 -198740665 + AluSx SINE Alu 1 305 -7 343 207 16 107 chr3 19296493 19296614 -198740544 - MIR SINE MIR -108 154 45 1758 134 90 7 chr3 19296614 19296891 -198740267 + AluJb SINE Alu 1 300 -12 267 254 0 0 chr3 19297077 19297132 -198740026 - Tigger5 DNA MER2_type 0 2323 2269 274 172 250 0 chr3 19297167 19297231 -198739927 - Tigger5 DNA MER2_type -2243 80 1 581 296 39 17 chr3 19297365 19297595 -198739563 - MIR SINE MIR -7 255 21 387 241 200 14 chr3 19298023 19298168 -198738990 + MIR SINE MIR 19 190 -72 262 288 0 12 chr3 19298214 19298294 -198738864 + MIR SINE MIR 184 262 0 230 277 15 15 chr3 19298285 19298350 -198738808 - MIR SINE MIR -63 145 81 * 2320 109 3 0 chr3 19298386 19298690 -198738468 - AluSx SINE Alu -5 307 3 1511 184 139 17 chr3 19298700 19299053 -198738105 + MSTD LTR MaLR 1 396 0 746 0 0 0 chr3 19299075 19299160 -198737998 - L1PA6 LINE L1 -6 6148 6064 943 120 0 8 chr3 19299170 19299295 -198737863 - FLAM_C SINE Alu -9 124 1 1293 184 60 183 chr3 19299297 19299406 -198737752 + L1MC4 LINE L1 6118 6239 -1569 1845 115 30 54 chr3 19299406 19299567 -198737591 - AluSx SINE Alu -19 293 141 2621 43 0 7 chr3 19299567 19299872 -198737286 - AluY SINE Alu -8 303 1 1845 115 30 54 chr3 19299872 19300006 -198737152 - AluSx SINE Alu -171 141 5 1293 184 60 183 chr3 19300006 19300712 -198736446 + L1MC4 LINE L1 6239 6777 -1031 396 247 47 13 chr3 19300981 19301131 -198736027 - MLT1H LTR MaLR -316 233 79 2544 172 40 4 chr3 19301454 19301955 -198735203 - L1MB4 LINE L1 -6 6174 5656 2023 161 7 0 chr3 19301955 19302265 -198734893 - AluJo SINE Alu 0 312 1 528 175 0 35 chr3 19302333 19302447 -198734711 + AluJb SINE Alu 203 312 0 893 147 0 0 chr3 19302461 19302590 -198734568 + FLAM_A SINE Alu 8 136 -6 236 324 14 0 chr3 19302637 19302711 -198734447 + MIR SINE MIR 110 184 -78 202 220 77 5 chr3 19303990 19304099 -198733059 - MIR SINE MIR -14 248 86 1530 145 139 3 chr3 19305680 19305983 -198731175 - MER4E LTR ERV1 -8 758 415 288 69 0 69 chr3 19305996 19306054 -198731104 - MER4B LTR ERV1 -556 54 1 445 265 121 28 chr3 19306368 19306583 -198730575 + MLT1K LTR MaLR 340 574 -14 649 254 117 76 chr3 19306649 19307043 -198730115 - MLT1J LTR MaLR -3 508 99 299 306 48 127 chr3 19307081 19307515 -198729643 - L2 LINE L2 -925 2389 1990 2209 99 0 62 chr3 19307521 19307843 -198729315 + AluSx SINE Alu 2 303 -9 241 224 30 60 chr3 19308009 19308076 -198729082 - MIR SINE MIR -98 164 100 463 291 0 4 chr3 19308268 19308404 -198728754 + MIR SINE MIR 19 151 -65 2300 107 10 3 chr3 19308498 19308806 -198728352 + AluSx SINE Alu 1 310 -2 244 270 203 27 chr3 19308952 19309100 -198728058 - MIR SINE MIR -7 255 82 231 209 0 0 chr3 19309480 19309523 -198727635 - MIR SINE MIR -2 260 218 2315 80 10 3 chr3 19309529 19309831 -198727327 - AluY SINE Alu -7 304 1 2049 143 0 10 chr3 19309958 19310266 -198726892 - AluJb SINE Alu -7 305 1 1974 145 3 3 chr3 19310426 19310716 -198726442 + AluJb SINE Alu 1 290 -22 390 286 75 41 chr3 19310724 19310808 -198726350 + HAL1b LINE L1 1191 1284 -64 1979 147 0 27 chr3 19310808 19311107 -198726051 + AluSq SINE Alu 2 292 -21 390 286 75 41 chr3 19311107 19311169 -198725989 + HAL1b LINE L1 1284 1342 -6 208 331 57 40 chr3 19311912 19312036 -198725122 - MIR SINE MIR -70 192 67 559 241 61 50 chr3 19312449 19312678 -198724480 + L1ME4a LINE L1 5856 6090 -31 2167 141 3 0 chr3 19312678 19312990 -198724168 - AluSq SINE Alu 0 313 1 559 241 61 50 chr3 19312990 19313022 -198724136 + L1ME4a LINE L1 6090 6120 -1 191 262 0 0 chr3 19313094 19313136 -198724022 + MIR SINE MIR 212 253 -9 626 283 16 21 chr3 19313224 19313415 -198723743 + MIR SINE MIR 71 260 -2 2330 87 3 0 chr3 19313925 19314223 -198722935 - AluY SINE Alu -12 299 1 1009 112 0 8 chr3 19314226 19314360 -198722798 - AluJb SINE Alu -179 133 1 294 95 0 0 chr3 19314361 19314403 -198722755 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 231 292 0 0 chr3 19315405 19315470 -198721688 - MER58 DNA MER1_type 0 2420 2356 192 40 0 0 chr3 19315486 19315511 -198721647 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1841 184 18 21 chr3 19315513 19315898 -198721260 + MER65C LTR ERV1 78 461 0 261 261 0 46 chr3 19315930 19315995 -198721163 - MER58 DNA MER1_type -166 58 1 242 229 0 0 chr3 19316398 19316446 -198720712 + L1M4 LINE L1 4284 4331 -1815 2385 77 0 7 chr3 19316452 19316750 -198720408 - AluY SINE Alu -15 296 1 250 315 14 0 chr3 19316819 19316892 -198720266 - L1ME LINE L1 -476 5645 5572 1826 129 96 7 chr3 19316904 19317175 -198719983 - AluSq SINE Alu -18 295 1 238 289 145 0 chr3 19317242 19317318 -198719840 - L2 LINE L2 0 3272 3186 221 167 0 0 chr3 19317316 19317352 -198719806 - MIR SINE MIR -83 179 144 * 61 37 0 0 chr3 19317354 19317436 -198719722 + AT_rich Low_complexity Low_complexity 1 82 0 292 195 12 69 chr3 19317437 19317475 -198719683 - MIR SINE MIR -64 144 120 2053 143 0 7 chr3 19317475 19317775 -198719383 + AluSx SINE Alu 1 298 -14 292 195 12 69 chr3 19317775 19317816 -198719342 - MIR SINE MIR -88 120 78 2279 116 7 7 chr3 19318066 19318376 -198718782 - AluJo SINE Alu -1 311 2 200 268 29 0 chr3 19318623 19318698 -198718460 + MIR SINE MIR 106 143 -65 1349 279 45 20 chr3 19318698 19318825 -198718333 + HERV16 LTR ERVL 2323 2445 -2551 2186 128 48 31 chr3 19318825 19319183 -198717975 + THE1B LTR MaLR 1 364 0 1349 279 45 20 chr3 19319183 19319495 -198717663 + HERV16 LTR ERVL 2445 2773 -2223 2497 81 0 7 chr3 19319534 19319844 -198717314 + AluY SINE Alu 1 308 -3 1681 135 45 28 chr3 19319848 19320136 -198717022 + L1PA16 LINE L1 5869 6161 -5 2189 78 12 72 chr3 19320311 19320630 -198716528 + AluSq SINE Alu 2 301 -12 1061 270 146 10 chr3 19320641 19321052 -198716106 - L2 LINE L2 -19 3294 2828 1439 159 40 0 chr3 19321294 19321545 -198715613 - LTR26B LTR ERV1 0 531 271 2728 102 151 118 chr3 19321782 19322680 -198714478 + pTR5 LTR ERV1 1206 2438 0 199 262 49 16 chr3 19323477 19323538 -198713620 + MIR SINE MIR 61 123 -85 389 266 8 40 chr3 19323781 19323905 -198713253 + MIR SINE MIR 24 143 -65 283 299 11 0 chr3 19323969 19324056 -198713102 + L1ME4a LINE L1 5186 5273 -873 2565 57 0 0 chr3 19324063 19324359 -198712799 - AluY SINE Alu -15 296 1 405 263 18 0 chr3 19324359 19324473 -198712685 + L1ME4a LINE L1 5685 5800 -559 6768 63 21 9 chr3 19324752 19325597 -198711561 + SVA Other Other 532 1386 0 279 0 0 0 chr3 19325606 19325637 -198711521 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2327 107 3 0 chr3 19326021 19326321 -198710837 - AluSp SINE Alu -12 301 1 246 267 0 0 chr3 19326500 19326575 -198710583 + L1ME4a LINE L1 6046 6120 -1 596 280 93 6 chr3 19326825 19327062 -198710096 - MIR SINE MIR 0 262 4 2320 140 22 0 chr3 19327125 19327481 -198709677 - THE1B LTR MaLR 0 364 1 9087 98 42 44 chr3 19327481 19328969 -198708189 - THE1B-int LTR MaLR 0 1580 97 459 61 15 0 chr3 19328969 19329035 -198708123 - THE1B-int LTR MaLR -1427 153 87 1711 161 99 28 chr3 19329035 19329605 -198707553 + MER51B LTR ERV1 1 376 -1 544 96 24 0 chr3 19329605 19329688 -198707470 - THE1B-int LTR MaLR -1495 85 1 2203 144 28 3 chr3 19329688 19330043 -198707115 - THE1B LTR MaLR 0 364 1 1245 218 8 11 chr3 19330559 19330820 -198706338 - AluJo SINE Alu -52 260 1 2178 121 0 3 chr3 19331210 19331507 -198705651 - AluSq SINE Alu -17 296 1 881 222 248 4 chr3 19331507 19331773 -198705385 - L1ME LINE L1 -542 5624 5294 242 178 0 0 chr3 19331776 19331821 -198705337 - Alu SINE Alu -8 293 249 1005 153 0 25 chr3 19331821 19331984 -198705174 + AluJo/FRAM SINE Alu 146 304 -8 357 113 38 38 chr3 19331998 19332078 -198705080 + HsTC2 DNA Tc2 3 82 -1816 902 145 0 0 chr3 19332084 19332208 -198704950 + FLAM_C SINE Alu 6 129 -14 2545 67 0 0 chr3 19332216 19332516 -198704642 + AluY SINE Alu 1 300 -11 1593 117 113 0 chr3 19332530 19332804 -198704354 + Tigger3(Golem) DNA MER2_type 2722 3026 -3 506 227 36 0 chr3 19332941 19333051 -198704107 + MIR SINE MIR 60 173 -89 2439 67 0 0 chr3 19333154 19333459 -198703699 - AluY SINE Alu 0 305 1 876 203 68 0 chr3 19333592 19333769 -198703389 - MER5A DNA MER1_type 0 189 1 585 227 147 90 chr3 19334050 19334167 -198702991 + MER102a DNA MER1_type 1 110 -1307 2321 116 0 0 chr3 19334167 19334470 -198702688 + AluSx SINE Alu 1 303 -9 585 227 147 90 chr3 19334470 19334482 -198702676 + MER102a DNA MER1_type 110 120 -1297 2145 128 20 0 chr3 19334482 19334788 -198702370 + AluSx SINE Alu 1 312 0 585 227 147 90 chr3 19334788 19334957 -198702201 + MER102a DNA MER1_type 120 317 -13 679 147 0 0 chr3 19335536 19335631 -198701527 - AluJ/FLAM SINE Alu -216 96 2 23 33 0 0 chr3 19335634 19335664 -198701494 + AT_rich Low_complexity Low_complexity 1 30 0 249 325 157 0 chr3 19335871 19336023 -198701135 + MIR3 SINE MIR 8 181 -63 359 283 92 17 chr3 19337145 19337318 -198699840 - Charlie8 DNA MER1_type -2129 288 103 1098 83 0 0 chr3 19337325 19337458 -198699700 + AluSc SINE Alu 1 133 -176 2040 138 3 7 chr3 19337458 19337754 -198699404 + AluSq SINE Alu 1 295 -18 944 290 118 7 chr3 19337929 19338343 -198698815 - LTR16B LTR ERVL -4 460 1 233 266 16 126 chr3 19338370 19338618 -198698540 + L2 LINE L2 2690 2899 -373 2425 60 10 10 chr3 19338618 19338920 -198698238 - AluSq SINE Alu -11 302 1 233 266 16 126 chr3 19338920 19338996 -198698162 + L2 LINE L2 2899 2982 -290 1154 163 72 0 chr3 19339244 19339453 -198697705 - L1M3 LINE L1 -397 5786 5563 22 35 0 0 chr3 19339849 19339878 -198697280 + AT_rich Low_complexity Low_complexity 1 29 0 1879 128 40 47 chr3 19339883 19340179 -198696979 + AluSx SINE Alu 3 296 -16 2193 105 0 3 chr3 19340181 19340477 -198696681 + AluY SINE Alu 1 295 -16 2506 145 71 67 chr3 19340477 19340798 -198696360 - L1MB3 LINE L1 -11 6172 5847 1978 176 0 0 chr3 19340798 19341110 -198696048 - AluJb SINE Alu 0 312 1 2506 145 71 67 chr3 19341110 19341396 -198695762 - L1MB3 LINE L1 -336 5847 5563 23 0 0 0 chr3 19341402 19341425 -198695733 + AT_rich Low_complexity Low_complexity 1 23 0 586 208 156 87 chr3 19341516 19341604 -198695554 + LTR50 LTR ERVL 471 551 -244 2370 57 0 11 chr3 19341604 19341933 -198695225 - AluY SINE Alu 0 327 2 198 0 0 0 chr3 19341933 19341955 -198695203 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2265 96 3 0 chr3 19341956 19342238 -198694920 - AluSx SINE Alu -29 283 1 2413 91 0 0 chr3 19342244 19342540 -198694618 - AluY SINE Alu -15 296 1 586 208 156 87 chr3 19342540 19342729 -198694429 + LTR50 LTR ERVL 555 779 -16 1033 188 0 0 chr3 19342831 19343001 -198694157 - AluJb SINE Alu -3 309 140 496 192 0 0 chr3 19343001 19343074 -198694084 - AluS SINE Alu -238 74 2 647 220 43 105 chr3 19343147 19343336 -198693822 - MIR SINE MIR -2 260 83 2138 116 3 0 chr3 19343336 19343646 -198693512 + AluSq SINE Alu 11 313 0 647 220 43 105 chr3 19343646 19343685 -198693473 - MIR SINE MIR -179 83 43 1050 119 94 5 chr3 19343907 19344108 -198693050 + L1MA8 LINE L1 6053 6271 -20 1549 201 3 28 chr3 19344108 19344427 -198692731 - AluJo SINE Alu -1 311 1 465 207 47 35 chr3 19345248 19345415 -198691743 + MIR SINE MIR 9 143 -65 611 274 86 5 chr3 19345515 19345701 -198691457 - MIR SINE MIR -55 207 7 761 185 23 0 chr3 19346109 19346239 -198690919 - FLAM_A SINE Alu 0 133 1 2424 93 0 3 chr3 19346364 19346664 -198690494 - AluSx SINE Alu -13 299 1 1848 169 0 29 chr3 19347086 19347394 -198689764 - AluJo SINE Alu -13 299 1 23 33 0 0 chr3 19347396 19347426 -198689732 + AT_rich Low_complexity Low_complexity 1 30 0 191 261 11 45 chr3 19347602 19347690 -198689468 - L2 LINE L2 -1110 2204 2120 * 253 323 157 0 chr3 19347633 19347785 -198689373 + MIR SINE MIR 8 181 -63 359 283 92 17 chr3 19348907 19349080 -198688078 - Charlie8 DNA MER1_type -2129 288 103 2261 109 0 0 chr3 19349087 19349380 -198687778 + AluSc SINE Alu 1 293 -16 269 250 24 0 chr3 19349394 19349478 -198687680 - HsTC2 DNA Tc2 -2 1896 1811 1763 30 0 0 chr3 19349623 19349820 -198687338 + AluY SINE Alu 101 297 -14 996 168 15 30 chr3 19349886 19350089 -198687069 + MER3 DNA MER1_type 10 209 0 534 281 97 51 chr3 19350112 19350404 -198686754 - L2 LINE L2 -70 3243 2933 2547 53 3 3 chr3 19350404 19350706 -198686452 + AluY SINE Alu 1 302 -9 534 281 97 51 chr3 19350706 19350744 -198686414 - L2 LINE L2 -380 2933 2898 2623 43 3 0 chr3 19350756 19351056 -198686102 + AluY SINE Alu 1 301 -10 290 181 69 55 chr3 19351104 19351195 -198685963 + MIR3 SINE MIR 95 196 -35 2163 120 10 7 chr3 19351310 19351609 -198685549 - AluSx SINE Alu -12 300 1 671 82 48 0 chr3 19351674 19351821 -198685337 + GA-rich Low_complexity Low_complexity 1 154 0 328 275 101 40 chr3 19352356 19352505 -198684653 - L1ME3A LINE L1 -8 6162 6005 562 231 266 8 chr3 19352592 19352768 -198684390 + L2 LINE L2 2886 3015 -298 2150 103 59 0 chr3 19352768 19353058 -198684100 - AluSq SINE Alu -6 307 1 562 231 266 8 chr3 19353058 19353137 -198684021 + L2 LINE L2 3015 3207 -106 931 207 5 11 chr3 19353138 19353326 -198683832 - MER20 DNA MER1_type 0 219 33 2158 113 3 3 chr3 19353510 19353801 -198683357 + AluSx SINE Alu 1 291 -21 261 197 0 0 chr3 19353806 19353882 -198683276 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 2289 106 0 0 chr3 19354017 19354309 -198682849 + AluSx SINE Alu 21 312 0 330 282 18 59 chr3 19354341 19354511 -198682647 + L2 LINE L2 1761 1923 -1391 683 254 18 0 chr3 19354519 19354688 -198682470 + L1MEc LINE L1 50 221 -6175 549 189 92 67 chr3 19354708 19354832 -198682326 + MLT1A2 LTR MaLR 1 131 -259 2518 72 0 3 chr3 19354832 19355136 -198682022 + AluY SINE Alu 1 303 -8 549 189 92 67 chr3 19355136 19355175 -198681983 + MLT1A2 LTR MaLR 131 168 -222 776 252 14 32 chr3 19355175 19355393 -198681765 + AluJo SINE Alu 81 294 -18 835 171 0 25 chr3 19355440 19355598 -198681560 + MLT1A2 LTR MaLR 189 342 -32 1169 155 0 27 chr3 19355598 19355785 -198681373 - AluJo SINE Alu -9 303 122 603 289 35 20 chr3 19355808 19356009 -198681149 + L1MEc LINE L1 254 457 -5939 1204 137 0 6 chr3 19356075 19356250 -198680908 - AluSg/x SINE Alu -5 305 132 2281 104 14 0 chr3 19356250 19356420 -198680738 - AluSq SINE Alu -12 301 124 183 80 0 0 chr3 19356420 19356445 -198680713 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2281 104 14 0 chr3 19356445 19356571 -198680587 - AluSq SINE Alu -189 124 1 326 304 48 126 chr3 19356573 19357010 -198680148 + L2 LINE L2 1987 2389 -925 657 249 119 79 chr3 19357048 19357442 -198679716 + MLT1J LTR MaLR 99 508 -3 491 321 88 10 chr3 19357508 19357804 -198679354 - MLT1K LTR MaLR -14 574 256 373 246 79 0 chr3 19357805 19357919 -198679239 - MLT1H LTR MaLR -1 548 426 316 342 11 31 chr3 19357919 19358189 -198678969 + GA-rich Low_complexity Low_complexity 1 264 0 396 247 47 13 chr3 19358190 19358340 -198678818 - MLT1H LTR MaLR -316 233 79 2569 170 40 4 chr3 19358663 19359168 -198677990 - L1MB4 LINE L1 -6 6174 5652 523 42 28 0 chr3 19359170 19359242 -198677916 - AluY SINE Alu -6 304 231 358 20 0 40 chr3 19359245 19359295 -198677863 + AluSq/x SINE Alu 88 135 -167 2205 115 3 7 chr3 19359295 19359591 -198677567 + AluSq SINE Alu 1 295 -18 926 292 118 7 chr3 19359766 19360180 -198676978 - LTR16B LTR ERVL -4 460 1 195 309 29 15 chr3 19360207 19360275 -198676883 + L2 LINE L2 2690 2758 -556 539 195 23 0 chr3 19360453 19360540 -198676618 - AluSp/q SINE Alu -9 304 216 1943 163 0 0 chr3 19360640 19360940 -198676218 + AluJb SINE Alu 9 308 -4 294 95 0 0 chr3 19361826 19361868 -198675290 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 1009 112 0 8 chr3 19361869 19362003 -198675155 + AluJb SINE Alu 1 133 -179 2330 87 3 0 chr3 19362006 19362304 -198674854 + AluY SINE Alu 1 299 -12 752 269 68 17 chr3 19362814 19363048 -198674110 - MIR SINE MIR -2 260 15 191 262 0 0 chr3 19363096 19363138 -198674020 - MIR SINE MIR -9 253 212 559 241 61 50 chr3 19363210 19363242 -198673916 - L1ME4a LINE L1 -1 6120 6090 2167 141 3 0 chr3 19363242 19363554 -198673604 + AluSq SINE Alu 1 313 0 559 241 61 50 chr3 19363554 19363783 -198673375 - L1ME4a LINE L1 -31 6090 5856 427 290 152 37 chr3 19365062 19365124 -198672034 - HAL1b LINE L1 -6 1342 1289 1979 147 0 27 chr3 19365124 19365423 -198671735 - AluSq SINE Alu -21 292 2 427 290 152 37 chr3 19365423 19365515 -198671643 - HAL1b LINE L1 -59 1289 1209 1976 152 3 3 chr3 19365515 19365805 -198671353 - AluJb SINE Alu -22 290 1 427 290 152 37 chr3 19365805 19365866 -198671292 - HAL1b LINE L1 -139 1209 1101 264 86 0 138 chr3 19365904 19365943 -198671215 + MSTB2 LTR MaLR 361 391 -66 2411 106 0 0 chr3 19365943 19366254 -198670904 - AluSx SINE Alu -1 311 1 264 86 0 138 chr3 19366254 19366272 -198670886 + MSTB2 LTR MaLR 391 410 -47 338 232 14 0 chr3 19366308 19366377 -198670781 + L2 LINE L2 3232 3301 -12 358 260 19 19 chr3 19366377 19366531 -198670627 + L1ME4a LINE L1 5968 6121 0 191 333 0 26 chr3 19367193 19367271 -198669887 + MIR3 SINE MIR 112 187 -21 862 188 75 11 chr3 19367381 19367567 -198669591 + MIR SINE MIR 56 253 -9 2418 100 0 3 chr3 19367684 19367993 -198669165 + AluSx SINE Alu 1 308 -4 791 216 39 39 chr3 19368137 19368345 -198668813 - MIR SINE MIR -4 258 51 354 129 0 0 chr3 19368713 19368775 -198668383 + (GGA)n Simple_repeat Simple_repeat 2 63 0 2507 63 0 0 chr3 19369081 19369380 -198667778 - AluY SINE Alu -12 299 1 912 137 8 0 chr3 19370199 19370330 -198666828 - FLAM_C SINE Alu -1 132 1 771 194 0 8 chr3 19370669 19370803 -198666355 - FLAM_A SINE Alu 0 133 1 591 177 223 29 chr3 19370823 19370998 -198666160 - MER20 DNA MER1_type -4 215 7 718 203 34 14 chr3 19371052 19371200 -198665958 + MIR SINE MIR 34 184 -78 2404 74 7 3 chr3 19371336 19371634 -198665524 - AluSg SINE Alu -11 299 1 1021 155 14 0 chr3 19372153 19372301 -198664857 - FRAM SINE Alu -18 158 9 260 378 41 0 chr3 19372307 19372405 -198664753 + L2 LINE L2 3136 3237 -35 533 250 100 6 chr3 19372413 19372573 -198664585 - MIR SINE MIR -1 261 87 2211 104 0 19 chr3 19372573 19372889 -198664269 + AluSg SINE Alu 1 310 0 2149 127 6 22 chr3 19373232 19373579 -198663579 - AluJb SINE Alu 0 342 1 290 253 27 27 chr3 19373590 19373665 -198663493 - MIR SINE MIR -63 145 70 328 254 45 45 chr3 19374002 19374136 -198663022 - MIR SINE MIR -68 194 61 1912 49 0 9 chr3 19374143 19374397 -198662761 + AluY SINE Alu 60 311 0 255 208 62 0 chr3 19374519 19374567 -198662591 + L2 LINE L2 3213 3263 -9 338 338 114 43 chr3 19374571 19374991 -198662167 + L3 LINE CR1 935 1384 -193 566 154 22 22 chr3 19374999 19375135 -198662023 + CT-rich Low_complexity Low_complexity 1 136 0 834 189 0 13 chr3 19375158 19375470 -198661688 - FRAM SINE Alu 0 176 26 821 315 82 16 chr3 19375658 19376109 -198661049 + Charlie7 DNA MER1_type 60 540 -2072 211 219 0 0 chr3 19376362 19376403 -198660755 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 320 188 0 12 chr3 19376782 19376867 -198660291 + CT-rich Low_complexity Low_complexity 1 84 0 236 143 18 0 chr3 19376892 19376948 -198660210 + (CA)n Simple_repeat Simple_repeat 2 58 0 307 293 0 49 chr3 19376999 19377122 -198660036 + MIR SINE MIR 31 141 -67 2290 157 15 34 chr3 19377123 19377245 -198659913 + L1M4 LINE L1 5280 5403 -781 2347 90 3 3 chr3 19377245 19377544 -198659614 + AluSp SINE Alu 3 301 -12 2290 157 15 34 chr3 19377544 19377887 -198659271 + L1M4 LINE L1 5403 5736 -448 1329 105 0 6 chr3 19377887 19378059 -198659099 - AluSx SINE Alu -141 171 1 433 96 14 0 chr3 19378059 19378132 -198659026 + L1MB7 LINE L1 6111 6184 0 458 259 43 14 chr3 19378907 19379046 -198658112 - MIR3 SINE MIR -6 202 60 252 143 0 0 chr3 19379145 19379187 -198657971 - MIR SINE MIR -174 88 47 1080 226 190 26 chr3 19380162 19380850 -198656308 + L2 LINE L2 2463 3292 -21 1989 144 17 0 chr3 19380850 19381142 -198656016 - AluJo SINE Alu -15 297 1 1080 226 190 26 chr3 19381142 19381169 -198655989 + L2 LINE L2 3292 3313 0 2039 159 0 3 chr3 19381430 19381739 -198655419 + AluSx SINE Alu 3 310 -2 1095 141 63 74 chr3 19381846 19382073 -198655085 + MER33 DNA MER1_type 1 211 -2374 1715 168 13 30 chr3 19382073 19382376 -198654782 - AluJo SINE Alu -14 298 1 1095 141 63 74 chr3 19382376 19382444 -198654714 + MER33 DNA MER1_type 211 278 -46 393 284 89 35 chr3 19382603 19382772 -198654386 + L3 LINE CR1 1301 1478 -99 813 191 28 51 chr3 19382805 19382983 -198654175 + MER5A DNA MER1_type 7 180 -9 2567 43 13 3 chr3 19382987 19383288 -198653870 + AluY SINE Alu 1 304 -7 214 233 0 0 chr3 19383294 19383337 -198653821 + MIR SINE MIR 218 260 -2 244 270 203 27 chr3 19383717 19383865 -198653293 + MIR SINE MIR 82 255 -7 2300 107 10 3 chr3 19384011 19384319 -198652839 - AluSx SINE Alu -2 310 1 463 291 0 4 chr3 19384413 19384549 -198652609 - MIR SINE MIR -65 143 19 241 224 30 60 chr3 19384741 19384808 -198652350 + MIR SINE MIR 100 164 -98 2168 104 52 0 chr3 19384974 19385262 -198651896 - AluSx SINE Alu -9 303 1 22 0 0 0 chr3 19385267 19385289 -198651869 + AT_rich Low_complexity Low_complexity 1 22 0 2368 71 20 7 chr3 19385672 19385968 -198651190 - AluY SINE Alu -11 300 1 1660 163 4 14 chr3 19385970 19386246 -198650912 - AluJb SINE Alu -21 291 19 1852 181 34 32 chr3 19386347 19386789 -198650369 - pTR5 LTR ERV1 -1254 1184 742 1108 174 0 20 chr3 19386878 19387073 -198650085 + AluJo SINE Alu 5 195 -117 225 276 153 0 chr3 19387142 19387240 -198649918 - MER113 DNA MER1_type? -31 490 378 875 194 55 0 chr3 19387240 19387405 -198649753 + MIR SINE MIR 3 176 -86 642 228 14 84 chr3 19387441 19387726 -198649432 - MER113 DNA MER1_type? -137 384 120 1406 59 0 0 chr3 19387734 19387904 -198649254 + L1PA11 LINE L1 6002 6171 -3 25 31 0 0 chr3 19387907 19387939 -198649219 + AT_rich Low_complexity Low_complexity 1 32 0 8322 56 4 10 chr3 19387963 19388976 -198648182 + LTR13 LTR ERVK 1 1007 0 2231 118 17 0 chr3 19389005 19389302 -198647856 + AluSx SINE Alu 3 304 -8 271 189 44 22 chr3 19389304 19389394 -198647764 - MER113 DNA MER1_type? -422 99 8 272 279 90 39 chr3 19389642 19389735 -198647423 + L1MC5 LINE L1 7612 7699 -262 2132 133 3 0 chr3 19389735 19390028 -198647130 + AluSx SINE Alu 1 293 -19 272 279 90 39 chr3 19390028 19390167 -198646991 + L1MC5 LINE L1 7699 7856 -105 463 236 5 5 chr3 19390523 19390662 -198646496 + GA-rich Low_complexity Low_complexity 1 139 -480 2350 169 69 5 chr3 19390662 19391095 -198646063 - LOR1b LTR ERV1 0 461 1 463 236 5 5 chr3 19391095 19391142 -198646016 + GA-rich Low_complexity Low_complexity 138 619 0 1538 198 79 5 chr3 19391459 19391897 -198645261 - MLT2B1 LTR ERVL 0 520 2 504 263 102 34 chr3 19392003 19392208 -198644950 - MIR SINE MIR -37 225 7 301 331 75 30 chr3 19392432 19392565 -198644593 + MIR3 SINE MIR 8 146 -62 239 234 0 0 chr3 19393074 19393121 -198644037 - L2 LINE L2 -19 3294 3248 2202 101 59 42 chr3 19393333 19393691 -198643467 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 19393769 19393790 -198643368 + AT_rich Low_complexity Low_complexity 1 21 0 344 250 32 26 chr3 19393806 19393962 -198643196 - L1ME4a LINE L1 -14 6107 5951 230 292 0 0 chr3 19394559 19394624 -198642534 - MER58 DNA MER1_type 0 2420 2356 192 40 0 0 chr3 19394640 19394665 -198642493 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1749 184 18 21 chr3 19394667 19395052 -198642106 + MER65C LTR ERV1 78 461 0 253 261 0 46 chr3 19395084 19395149 -198642009 - MER58 DNA MER1_type -166 58 1 2272 90 0 3 chr3 19395598 19395898 -198641260 - AluY SINE Alu -7 304 6 21 36 0 0 chr3 19395898 19395926 -198641232 + AT_rich Low_complexity Low_complexity 1 28 0 1901 93 0 4 chr3 19395948 19396207 -198640951 + AluY SINE Alu 54 311 0 2429 180 32 30 chr3 19396234 19396296 -198640862 + L1MC3 LINE L1 4941 5001 -1145 1742 162 53 3 chr3 19396296 19396580 -198640578 + AluSx SINE Alu 1 298 -14 2429 180 32 30 chr3 19396580 19396723 -198640435 + L1MC3 LINE L1 5001 5142 -1004 2197 97 0 0 chr3 19396723 19397041 -198640117 - AluSc SINE Alu 0 309 1 2429 180 32 30 chr3 19397041 19397306 -198639852 + L1MC3 LINE L1 5142 4985 -1161 2221 86 20 0 chr3 19397306 19397598 -198639560 - AluSx SINE Alu -14 298 1 2429 180 32 30 chr3 19397598 19398019 -198639139 + L1MC3 LINE L1 4984 5403 -743 2569 137 169 20 chr3 19398063 19398618 -198638540 - MER67B LTR ERV1 -22 639 2 301 274 12 0 chr3 19398760 19398844 -198638314 - MLT1J LTR MaLR -354 157 73 408 302 33 33 chr3 19399437 19399619 -198637539 + Charlie8 DNA MER1_type 1 182 -2235 205 245 306 0 chr3 19400312 19400410 -198636748 - L2 LINE L2 0 3272 3145 913 245 5 0 chr3 19400430 19400618 -198636540 + MIR SINE MIR 14 202 -60 361 211 167 0 chr3 19400658 19400748 -198636410 - L2 LINE L2 -6 3266 3162 326 309 134 7 chr3 19401510 19401659 -198635499 + MIR SINE MIR 35 202 -60 314 289 10 21 chr3 19401663 19401760 -198635398 - L2 LINE L2 -39 3274 3179 181 319 69 26 chr3 19401970 19402086 -198635072 - MIR SINE MIR -70 192 72 1635 161 4 18 chr3 19402224 19402518 -198634640 - AluJo SINE Alu 0 304 15 424 285 95 14 chr3 19402669 19402890 -198634268 + L2 LINE L2 2158 2396 -918 588 100 0 0 chr3 19403101 19403191 -198633967 - AluY SINE Alu 0 312 223 1332 63 0 0 chr3 19403192 19403350 -198633808 - AluY SINE Alu -153 158 1 392 256 20 28 chr3 19403351 19403555 -198633603 + L2 LINE L2 2688 2962 -351 248 280 248 0 chr3 19404303 19404428 -198632730 + L2 LINE L2 3010 3165 -148 1219 211 37 9 chr3 19404430 19404753 -198632405 - L1MB7 LINE L1 -9 6175 5844 400 372 50 35 chr3 19404803 19405257 -198631901 + L2 LINE L2 2817 3312 -1 491 307 78 43 chr3 19406063 19406240 -198630918 + MIR SINE MIR 20 208 -54 2610 49 0 0 chr3 19406240 19406548 -198630610 + AluY SINE Alu 1 308 -3 491 307 78 43 chr3 19406548 19406601 -198630557 + MIR SINE MIR 208 258 -4 272 327 59 39 chr3 19406723 19406876 -198630282 + L2 LINE L2 2896 3051 -262 231 214 0 0 chr3 19407001 19407043 -198630115 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 328 306 58 8 chr3 19407103 19407224 -198629934 + L2 LINE L2 3185 3311 -2 552 214 44 38 chr3 19407988 19408147 -198629011 - MER5A DNA MER1_type -18 171 12 342 296 143 42 chr3 19408641 19408830 -198628328 + MIR SINE MIR 22 229 -33 1007 246 70 56 chr3 19409267 19409624 -198627534 - MLT1K LTR MaLR -144 444 83 185 309 157 31 chr3 19409927 19410118 -198627040 + L3 LINE CR1 1347 1561 -16 409 295 70 0 chr3 19410430 19410630 -198626528 - L2 LINE L2 -288 3025 2812 222 250 0 0 chr3 19410765 19410813 -198626345 + L2 LINE L2 2999 3046 -267 591 332 60 7 chr3 19411997 19412295 -198624863 - L2 LINE L2 -2 3311 2998 218 303 15 0 chr3 19412639 19412705 -198624453 + L2 LINE L2 3201 3267 -5 299 326 90 14 chr3 19412987 19413131 -198624027 - L2 LINE L2 0 3313 3159 1743 182 10 75 chr3 19413132 19413157 -198624001 - L1MB7 LINE L1 -18 6166 6141 2388 65 0 10 chr3 19413157 19413467 -198623691 - AluY SINE Alu -4 307 1 1743 182 10 75 chr3 19413467 19413809 -198623349 - L1MB7 LINE L1 -43 6141 5835 1733 148 14 31 chr3 19413809 19414099 -198623059 - AluJb SINE Alu -23 289 5 1743 182 10 75 chr3 19414099 19414209 -198622949 - L1MB7 LINE L1 -349 5835 5719 187 320 51 0 chr3 19414472 19414550 -198622608 - L2 LINE L2 -1384 1930 1849 534 271 118 50 chr3 19414573 19414956 -198622202 - L2 LINE L2 -351 2963 2555 1581 206 88 29 chr3 19415360 19415734 -198621424 + MSTD LTR MaLR 1 396 0 311 243 103 0 chr3 19415734 19415841 -198621317 - MER113 DNA MER1_type? -337 184 67 291 164 73 0 chr3 19415924 19415979 -198621179 - MIR SINE MIR -55 153 95 665 315 156 8 chr3 19416393 19416777 -198620381 - L2 LINE L2 0 3313 2873 291 293 80 17 chr3 19417162 19417310 -198619848 - MIR SINE MIR -52 156 3 257 309 200 36 chr3 19417925 19418145 -198619013 - L3 LINE CR1 -10 1567 1312 395 288 25 0 chr3 19418148 19418266 -198618892 + MIR SINE MIR 62 182 -80 351 383 158 8 chr3 19418315 19418681 -198618477 - L3 LINE CR1 -226 1351 931 548 241 85 0 chr3 19418847 19418988 -198618170 + L2 LINE L2 3119 3271 -1 323 339 45 0 chr3 19419513 19419625 -198617533 - L2 LINE L2 -4 3309 3193 271 306 45 36 chr3 19419623 19419734 -198617424 - MIR SINE MIR -29 233 122 * 505 228 41 28 chr3 19419900 19420045 -198617113 - MIR3 SINE MIR -59 149 3 528 340 130 20 chr3 19420206 19420762 -198616396 - L2 LINE L2 0 3272 2637 302 285 248 7 chr3 19421129 19421266 -198615892 - MIR SINE MIR -35 227 58 210 286 83 12 chr3 19421300 19421384 -198615774 - MER91C DNA MER1_type -30 110 21 413 350 51 0 chr3 19421453 19421670 -198615488 - MIR SINE MIR -14 248 21 502 259 108 67 chr3 19421796 19421828 -198615330 - L1ME4a LINE L1 -34 6087 6058 1594 220 0 0 chr3 19421828 19422133 -198615025 + AluJo SINE Alu 1 305 -7 502 259 108 67 chr3 19422133 19422517 -198614641 - L1ME4a LINE L1 -63 6058 5654 223 378 67 0 chr3 19423049 19423303 -198613855 + L2 LINE L2 2520 2790 -524 372 357 21 0 chr3 19423321 19423464 -198613694 + L2 LINE L2 2914 3059 -213 268 340 20 0 chr3 19425865 19425965 -198611193 + L1ME4a LINE L1 5846 5947 -223 995 138 88 0 chr3 19426207 19426366 -198610792 + FAM SINE Alu 2 174 -1 226 257 27 0 chr3 19426437 19426511 -198610647 + L1ME4a LINE L1 5940 6015 -106 205 229 98 0 chr3 19427911 19427971 -198609187 + MIR3 SINE MIR 102 167 -41 209 316 173 42 chr3 19427971 19428139 -198609019 + MIR SINE MIR 3 192 -70 461 262 41 0 chr3 19428445 19428567 -198608591 + MIR3 SINE MIR 37 163 -45 400 246 232 7 chr3 19428720 19428862 -198608296 + MIR SINE MIR 13 186 -76 186 226 75 0 chr3 19428885 19428938 -198608220 - MIR SINE MIR -87 175 119 352 296 176 39 chr3 19429016 19429351 -198607807 + L2 LINE L2 2842 3222 -91 254 368 56 0 chr3 19429508 19429652 -198607506 - MIR SINE MIR -89 173 22 27 0 0 0 chr3 19429784 19429811 -198607347 + GC_rich Low_complexity Low_complexity 1 27 0 292 256 37 12 chr3 19432057 19432139 -198605019 - MIR SINE MIR -73 189 106 422 259 43 0 chr3 19432243 19432359 -198604799 - MER5B DNA MER1_type -48 130 10 432 235 45 30 chr3 19433019 19433151 -198604007 - MIR SINE MIR -50 212 79 513 269 61 9 chr3 19434569 19434781 -198602377 - L2 LINE L2 -214 3058 2836 362 263 30 0 chr3 19436277 19436376 -198600782 + MIR SINE MIR 41 142 -66 240 308 42 49 chr3 19436494 19436637 -198600521 - L2 LINE L2 0 3313 3172 233 231 0 0 chr3 19437128 19437180 -198599978 - L1M2 LINE L1 -488 5824 5773 * 3286 187 32 6 chr3 19437174 19437884 -198599274 - L1MB3 LINE L1 -41 6142 5414 840 318 88 12 chr3 19438597 19439087 -198598071 + MER20B DNA MER1_type 207 733 -50 820 226 39 81 chr3 19439115 19439447 -198597711 + L1MD2 LINE L1 6041 6358 -1 421 290 57 0 chr3 19440929 19441053 -198596105 + MIR SINE MIR 68 198 -64 234 0 0 0 chr3 19441170 19441196 -198595962 + (GGGAA)n Simple_repeat Simple_repeat 1 26 0 377 248 28 21 chr3 19441426 19441571 -198595587 - MLT1K LTR MaLR -356 232 87 345 378 52 12 chr3 19443181 19443353 -198593805 + MIR SINE MIR 68 246 -16 216 343 57 0 chr3 19443460 19443530 -198593628 + L2 LINE L2 3129 3202 -70 1588 175 31 7 chr3 19443621 19443913 -198593245 - AluJo SINE Alu -7 305 7 376 327 9 0 chr3 19444847 19444957 -198592201 + MIR SINE MIR 73 183 -79 2187 114 0 0 chr3 19445096 19445402 -198591756 - AluSx SINE Alu -6 306 1 202 333 28 9 chr3 19445679 19445787 -198591371 + MIR SINE MIR 9 119 -89 220 278 15 105 chr3 19446751 19446884 -198590274 - L2 LINE L2 -1803 1511 1391 * 419 212 62 18 chr3 19446814 19446927 -198590231 + MIR SINE MIR 75 192 -70 338 226 86 0 chr3 19447854 19447947 -198589211 + MIR SINE MIR 115 215 -47 253 176 20 0 chr3 19448039 19448090 -198589068 - MIR3 SINE MIR -49 159 108 293 243 27 14 chr3 19448483 19448557 -198588601 - MIR SINE MIR -107 155 81 264 267 37 30 chr3 19449447 19449582 -198587576 + L1ME4a LINE L1 5979 6114 -7 336 349 18 0 chr3 19450101 19450210 -198586948 + L1MD2 LINE L1 5326 5436 -806 2332 283 76 9 chr3 19450617 19451486 -198585672 + L1MD2 LINE L1 5426 6352 -7 243 293 37 12 chr3 19451508 19451590 -198585568 - MER5B DNA MER1_type -94 84 1 196 172 172 0 chr3 19451593 19451651 -198585507 - MIR SINE MIR -58 150 83 634 268 49 32 chr3 19451773 19452019 -198585139 - L1ME3A LINE L1 -4 6166 5917 279 313 0 12 chr3 19452354 19452482 -198584676 + MIR SINE MIR 79 203 -59 808 219 145 26 chr3 19452601 19452829 -198584329 - MIR SINE MIR 0 262 8 272 208 56 0 chr3 19453583 19453655 -198583503 + MIR SINE MIR 187 262 0 186 240 0 0 chr3 19453674 19453724 -198583434 + GA-rich Low_complexity Low_complexity 2 51 0 208 264 0 28 chr3 19453758 19453830 -198583328 - L2 LINE L2 -237 3035 2966 216 378 12 0 chr3 19453852 19453934 -198583224 + MIR SINE MIR 109 191 -71 525 283 7 0 chr3 19455173 19455311 -198581847 - MIR SINE MIR -91 171 33 257 345 36 29 chr3 19455508 19455647 -198581511 + MIR3 SINE MIR 20 159 -49 195 311 198 0 chr3 19456799 19456905 -198580253 + L3 LINE CR1 1371 1497 -80 374 255 301 52 chr3 19457958 19458307 -198578851 - L2 LINE L2 -7 3306 2871 208 277 30 79 chr3 19458329 19458430 -198578728 - MIR SINE MIR -55 207 112 208 322 11 56 chr3 19458416 19458506 -198578652 - MIR3 SINE MIR -110 98 13 193 320 31 41 chr3 19458858 19458955 -198578203 + MIR3 SINE MIR 87 182 -26 991 149 79 60 chr3 19458994 19459209 -198577949 - MER20B DNA MER1_type 0 219 1 200 213 33 49 chr3 19459460 19459521 -198577637 + MIR SINE MIR 108 167 -95 213 317 91 58 chr3 19459693 19459936 -198577222 - L2 LINE L2 -81 3232 2982 329 277 146 7 chr3 19461516 19461653 -198575505 + MIR3 SINE MIR 7 162 -46 388 312 21 16 chr3 19462552 19462741 -198574417 - L2 LINE L2 -227 3045 2856 338 368 85 27 chr3 19462998 19463327 -198573831 - L2 LINE L2 -101 3171 2824 421 340 45 13 chr3 19463374 19463530 -198573628 - MIR SINE MIR -79 183 23 704 110 0 0 chr3 19464482 19464582 -198572576 - L1MA1 LINE L1 0 6302 6203 254 271 12 35 chr3 19464599 19464684 -198572474 - L1MC/D LINE L1 -767 5577 5495 2309 108 24 19 chr3 19464686 19465104 -198572054 - L1MA1 LINE L1 -101 6201 5782 388 242 87 17 chr3 19465111 19465268 -198571890 - L1MC4 LINE L1 -1339 6983 1977 587 336 47 39 chr3 19465278 19465355 -198571803 - L1ME3A LINE L1 -206 5964 5889 2915 145 45 4 chr3 19465355 19465844 -198571314 - L1MB3 LINE L1 -3 6180 5672 587 336 47 39 chr3 19465844 19466254 -198570904 - L1ME3A LINE L1 -281 5889 5473 29 47 0 0 chr3 19466906 19466949 -198570209 + AT_rich Low_complexity Low_complexity 1 43 0 595 229 83 13 chr3 19466949 19467106 -198570052 - MIR SINE MIR -11 251 84 1341 264 140 42 chr3 19467206 19467748 -198569410 - MLT1G1 LTR MaLR 0 595 1 923 179 45 0 chr3 19469233 19469434 -198567724 + MLT1B LTR MaLR 1 210 -180 * 1139 258 136 18 chr3 19469432 19469844 -198567314 + MLT2B1 LTR ERVL 8 481 -39 225 94 0 0 chr3 19469844 19469876 -198567282 + (TA)n Simple_repeat Simple_repeat 2 33 0 1139 258 136 18 chr3 19469876 19469920 -198567238 + MLT2B1 LTR ERVL 481 518 -2 900 156 75 0 chr3 19469922 19470095 -198567063 + MLT1B LTR MaLR 205 390 0 466 170 85 0 chr3 19470217 19470323 -198566835 - MER96B DNA MER1_type? 0 417 303 25 31 0 0 chr3 19470488 19470520 -198566638 + AT_rich Low_complexity Low_complexity 1 32 0 2367 40 0 4 chr3 19470521 19470799 -198566359 + AluY SINE Alu 21 297 -14 896 272 32 49 chr3 19471069 19471446 -198565712 + L1MC4 LINE L1 6258 8042 0 668 262 112 35 chr3 19471525 19471811 -198565347 + L2 LINE L2 3005 3312 -1 291 259 27 80 chr3 19471830 19471942 -198565216 + MIR SINE MIR 33 138 -70 736 225 84 0 chr3 19472225 19472403 -198564755 - MER113 DNA MER1_type? -212 309 117 834 275 69 0 chr3 19472628 19472904 -198564254 - L1MC5 LINE L1 -365 7596 7302 21 36 0 0 chr3 19472914 19472942 -198564216 + AT_rich Low_complexity Low_complexity 1 28 0 1755 158 10 10 chr3 19472985 19473276 -198563882 + AluSx SINE Alu 1 291 -21 728 219 0 0 chr3 19473285 19473413 -198563745 + FLAM_C SINE Alu 5 132 -1 274 243 14 14 chr3 19473643 19473713 -198563445 + (CACG)n Simple_repeat Simple_repeat 2 71 0 218 289 37 67 chr3 19473812 19473937 -198563221 + L3b LINE CR1 1275 1395 -188 594 317 74 16 chr3 19473937 19474180 -198562978 + MIR SINE MIR 4 260 -2 375 252 45 65 chr3 19474342 19474497 -198562661 - MIR SINE MIR -69 193 42 327 341 22 7 chr3 19474459 19474594 -198562564 + MIR3 SINE MIR 23 159 -49 * 232 284 54 14 chr3 19475073 19475147 -198562011 + MIR3 SINE MIR 89 165 -43 290 321 221 28 chr3 19475155 19475404 -198561754 - L2 LINE L2 0 3272 2976 469 278 103 52 chr3 19475423 19475617 -198561541 + Charlie8 DNA MER1_type 39 242 -2175 738 263 114 26 chr3 19475641 19475949 -198561209 + L2 LINE L2 2360 2694 -620 225 0 0 0 chr3 19476490 19476515 -198560643 + (A)n Simple_repeat Simple_repeat 1 25 0 197 154 0 26 chr3 19476938 19476977 -198560181 - L2 LINE L2 -227 3045 3008 359 282 169 16 chr3 19477036 19477355 -198559803 - LTR33 LTR ERVL -67 454 87 239 305 34 90 chr3 19478236 19478413 -198558745 - MIR SINE MIR -17 245 79 280 359 29 0 chr3 19478419 19478522 -198558636 - MIR SINE MIR -71 191 86 996 121 11 6 chr3 19478638 19478812 -198558346 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 975 234 6 0 chr3 19478873 19479187 -198557971 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 416 291 78 107 chr3 19479285 19479556 -198557602 + L3 LINE CR1 1292 1554 -23 182 227 100 7 chr3 19479750 19479849 -198557309 + MIR SINE MIR 33 143 -65 619 311 50 27 chr3 19480219 19480438 -198556720 + MIR SINE MIR 23 246 -16 194 310 70 0 chr3 19481627 19481727 -198555431 + MIR SINE MIR 79 185 -77 503 251 204 24 chr3 19481757 19481968 -198555190 + MIR SINE MIR 13 261 -1 375 171 0 0 chr3 19482404 19482480 -198554678 + CT-rich Low_complexity Low_complexity 1 76 0 1080 152 30 0 chr3 19482544 19482708 -198554450 + FAM SINE Alu 1 169 -6 293 320 25 16 chr3 19484181 19484303 -198552855 + MIR SINE MIR 23 145 -117 251 260 29 58 chr3 19484446 19484550 -198552608 + MIR SINE MIR 13 113 -149 261 273 42 109 chr3 19485165 19485330 -198551828 - L3 LINE CR1 -125 1452 1299 211 356 107 13 chr3 19485393 19485542 -198551616 - L3 LINE CR1 -408 1169 1007 214 333 86 17 chr3 19485701 19485818 -198551340 - MIR SINE MIR -19 243 119 529 282 75 39 chr3 19485980 19486235 -198550923 - L2 LINE L2 -10 3303 3040 1709 197 93 17 chr3 19486235 19486642 -198550516 + L1MB8 LINE L1 5741 6178 0 296 284 191 38 chr3 19486649 19487046 -198550112 - L2 LINE L2 -265 3048 2592 265 266 0 13 chr3 19488141 19488220 -198548938 - MIR SINE MIR -80 182 105 330 292 77 23 chr3 19488943 19489073 -198548085 + MIR SINE MIR 54 190 -72 604 287 58 22 chr3 19489556 19489779 -198547379 - L2 LINE L2 0 3313 3083 2095 73 11 0 chr3 19490144 19490419 -198546739 + AluSx SINE Alu 30 307 -5 182 294 47 24 chr3 19490421 19490506 -198546652 + MIR SINE MIR 39 125 -137 800 254 45 9 chr3 19490508 19490728 -198546430 - MLT1K LTR MaLR -4 584 357 212 256 0 0 chr3 19490733 19490776 -198546382 + L2 LINE L2 3214 3256 -16 297 278 43 108 chr3 19490800 19491077 -198546081 - L2 LINE L2 -29 3243 2985 391 278 119 20 chr3 19491813 19492029 -198545129 + MIR SINE MIR 24 262 0 25 31 0 0 chr3 19492038 19492070 -198545088 + AT_rich Low_complexity Low_complexity 1 32 0 545 248 122 45 chr3 19492656 19492902 -198544256 - MLT1K LTR MaLR -2 586 322 769 252 93 18 chr3 19492931 19493157 -198544001 - MLT1K LTR MaLR -332 256 14 570 270 74 12 chr3 19493280 19493443 -198543715 - MIR SINE MIR -88 174 2 249 159 0 0 chr3 19493691 19493735 -198543423 + (CA)n Simple_repeat Simple_repeat 2 45 0 346 280 11 0 chr3 19494114 19494207 -198542951 + MIR SINE MIR 49 142 -66 474 240 34 4 chr3 19494339 19494507 -198542651 + MIR SINE MIR 20 191 -65 191 264 199 69 chr3 19494651 19494928 -198542230 - L2 LINE L2 -34 3279 2967 190 302 0 0 chr3 19495388 19495441 -198541717 - MIR3 SINE MIR -14 194 142 393 307 78 20 chr3 19495759 19495912 -198541246 - MIR SINE MIR -64 198 37 244 226 51 0 chr3 19496343 19496408 -198540750 + MIR SINE MIR 87 148 -60 286 240 70 37 chr3 19496725 19496964 -198540194 - MLT1H LTR MaLR 0 549 216 379 258 178 19 chr3 19497061 19497274 -198539884 - MLT1H LTR MaLR -292 257 11 519 248 39 0 chr3 19497654 19497783 -198539375 - MER3 DNA MER1_type -4 205 72 229 233 221 12 chr3 19499011 19499097 -198538061 + L2 LINE L2 3208 3311 -2 1079 214 61 51 chr3 19499324 19499736 -198537422 - L1MC4 LINE L1 -3 8039 7624 3948 182 38 32 chr3 19499741 19500093 -198537065 - L1MB7 LINE L1 -13 6171 5823 727 125 62 23 chr3 19500093 19500221 -198536937 - FLAM_C SINE Alu 0 133 1 3948 182 38 32 chr3 19500221 19500804 -198536354 - L1MB7 LINE L1 -361 5823 5232 846 205 0 0 chr3 19500818 19500974 -198536184 - FRAM SINE Alu -8 168 13 1581 179 11 37 chr3 19500984 19501284 -198535874 - L1MB7 LINE L1 -940 5206 4917 2004 120 0 43 chr3 19501284 19501610 -198535548 - AluSx SINE Alu 0 312 1 1581 179 11 37 chr3 19501610 19501688 -198535470 - L1MB7 LINE L1 -1229 4917 4838 2019 119 0 32 chr3 19502129 19502440 -198534718 + AluSx SINE Alu 4 304 -8 362 327 62 19 chr3 19502444 19502606 -198534552 + MIR SINE MIR 90 258 -4 233 341 127 8 chr3 19502765 19502891 -198534267 - L2 LINE L2 -34 3238 3098 366 245 77 43 chr3 19503080 19503288 -198533870 - L1MC/D LINE L1 -2334 5474 5260 233 323 30 10 chr3 19503421 19503520 -198533638 - L2 LINE L2 -527 2787 2687 236 275 44 0 chr3 19504039 19504130 -198533028 - L3 LINE CR1 -108 1469 1375 273 313 67 47 chr3 19504145 19504295 -198532863 - MIR3 SINE MIR -21 187 35 24 0 0 0 chr3 19504735 19504759 -198532399 + AT_rich Low_complexity Low_complexity 1 24 0 536 260 8 8 chr3 19504759 19504882 -198532276 - FLAM_C SINE Alu -9 124 2 462 197 63 175 chr3 19504887 19505006 -198532152 - L1MC4a LINE L1 -1873 5935 5851 1936 163 0 3 chr3 19505006 19505319 -198531839 - AluJb SINE Alu 0 312 1 462 197 63 175 chr3 19505319 19505422 -198531736 - L1MC4a LINE L1 -1957 5851 5738 724 134 63 0 chr3 19505467 19505594 -198531564 + MER7A DNA MER2_type 2 134 -212 1280 132 15 0 chr3 19505689 19505893 -198531265 + MER7A DNA MER2_type 124 330 -6 278 236 45 0 chr3 19506165 19506254 -198530904 - L1MC4a LINE L1 -1883 5925 5833 562 302 75 20 chr3 19506402 19506707 -198530451 - L1MC4a LINE L1 -2232 5576 5255 289 279 7 93 chr3 19506910 19507050 -198530108 - MIR SINE MIR -54 208 81 1578 159 70 4 chr3 19507219 19507490 -198529668 - AluJo SINE Alu -23 289 1 472 221 168 0 chr3 19507806 19507955 -198529203 + MIR SINE MIR 52 225 -37 290 217 123 9 chr3 19508081 19508187 -198528971 - MIR3 SINE MIR -86 122 5 228 279 0 0 chr3 19508683 19508751 -198528407 + MIR SINE MIR 79 146 -116 23 33 0 0 chr3 19509135 19509165 -198527993 + GC_rich Low_complexity Low_complexity 1 30 0 45 104 0 0 chr3 19509206 19509370 -198527788 + GC_rich Low_complexity Low_complexity 1 164 0 22 70 0 0 chr3 19509398 19509441 -198527717 + GC_rich Low_complexity Low_complexity 1 43 0 320 284 35 0 chr3 19511142 19511258 -198525900 - MIR SINE MIR -58 150 31 189 0 0 0 chr3 19511491 19511512 -198525646 + (CCCTG)n Simple_repeat Simple_repeat 4 24 0 194 329 71 0 chr3 19512931 19513001 -198524157 + L2 LINE L2 3141 3215 -57 253 207 17 35 chr3 19513040 19513098 -198524060 + L3 LINE CR1 1393 1449 -128 229 288 0 0 chr3 19513505 19513571 -198523587 + MIR SINE MIR 82 147 -61 542 207 76 35 chr3 19513821 19513966 -198523192 + MIR SINE MIR 34 184 -78 631 226 22 39 chr3 19514087 19514268 -198522890 - L2 LINE L2 0 3313 3136 383 248 124 31 chr3 19514367 19514496 -198522662 + MIR3 SINE MIR 47 187 -21 530 282 36 60 chr3 19514758 19514948 -198522210 - L1ME3A LINE L1 -173 6001 5827 2221 106 0 3 chr3 19514948 19515260 -198521898 - AluSx SINE Alu -1 311 1 530 282 36 60 chr3 19515260 19515419 -198521739 - L1ME3A LINE L1 -347 5827 5666 499 296 108 18 chr3 19515451 19515933 -198521225 - L1ME3A LINE L1 -668 5502 4971 242 275 50 25 chr3 19516878 19516958 -198520200 - MIR SINE MIR -78 184 103 256 325 20 66 chr3 19517267 19517418 -198519740 + MIR SINE MIR 119 262 0 2579 45 0 0 chr3 19518268 19518576 -198518582 + AluY SINE Alu 1 308 -3 400 305 104 7 chr3 19518908 19519062 -198518096 + MER91A DNA MER1_type 11 179 -17 392 307 107 13 chr3 19519530 19519755 -198517403 - L2 LINE L2 0 3272 3027 181 360 40 0 chr3 19520427 19520527 -198516631 + MIR SINE MIR 27 130 -132 180 206 0 0 chr3 19520527 19520561 -198516597 + L2 LINE L2 3221 3254 -18 399 288 9 0 chr3 19520870 19520981 -198516177 + Charlie1 DNA MER1_type 59 170 -2591 555 188 86 8 chr3 19521023 19521151 -198516007 + Charlie1 DNA MER1_type 2624 2761 0 578 231 60 17 chr3 19522072 19522258 -198514900 - MIR SINE MIR -62 146 2 263 237 54 11 chr3 19522347 19522440 -198514718 - MLT1K LTR MaLR -8 580 484 444 247 115 11 chr3 19523121 19523295 -198513863 + MIR SINE MIR 51 242 -20 286 344 31 49 chr3 19523555 19523718 -198513440 - MER113 DNA MER1_type? -40 481 322 523 239 53 11 chr3 19524049 19524237 -198512921 - MER113 DNA MER1_type? -199 322 127 328 328 8 8 chr3 19524439 19524561 -198512597 + L2 LINE L2 2932 3053 -219 2164 89 3 29 chr3 19524658 19524974 -198512184 - AluSg SINE Alu -2 308 1 352 198 12 35 chr3 19525016 19525102 -198512056 - MER5A DNA MER1_type -105 84 1 420 333 58 0 chr3 19525112 19525283 -198511875 + MIR SINE MIR 20 200 -62 1734 167 0 35 chr3 19526025 19526336 -198510822 - AluJo SINE Alu -12 300 1 323 307 203 0 chr3 19526593 19526756 -198510402 - L2 LINE L2 0 3313 3118 409 240 78 16 chr3 19527294 19527423 -198509735 - MIR SINE MIR -70 192 56 594 256 107 14 chr3 19527536 19527751 -198509407 + MIR SINE MIR 6 240 -22 507 247 168 16 chr3 19527772 19527962 -198509196 + MIR SINE MIR 1 219 -43 261 335 71 13 chr3 19528236 19528391 -198508767 - MIR SINE MIR -19 243 80 248 324 39 10 chr3 19529521 19529623 -198507535 + MIR3 SINE MIR 87 191 -17 828 65 0 0 chr3 19529644 19529751 -198507407 - L1MA3 LINE L1 0 6305 6199 333 317 38 38 chr3 19529952 19530138 -198507020 - L2 LINE L2 -194 3078 2893 373 274 0 28 chr3 19530676 19530782 -198506376 + MIR3 SINE MIR 91 193 -15 1121 192 0 10 chr3 19531068 19531276 -198505882 - AluJb SINE Alu -20 292 87 1578 109 35 0 chr3 19531337 19531596 -198505562 - AluSx SINE Alu 0 312 55 313 124 4 89 chr3 19531649 19531727 -198505431 - Alu SINE Alu -5 297 238 334 323 105 8 chr3 19531804 19532052 -198505106 - L1MC4a LINE L1 -1907 5901 5630 887 236 16 6 chr3 19532256 19532438 -198504720 - MER58A DNA MER1_type -40 184 1 222 275 87 0 chr3 19533276 19533345 -198503813 - MIR SINE MIR -97 165 91 1073 200 18 11 chr3 19533913 19534260 -198502898 - L1P5 LINE L1 -612 5539 5191 259 298 0 48 chr3 19534861 19534965 -198502193 + MIR SINE MIR 113 211 -51 239 223 0 64 chr3 19535409 19535503 -198501655 + C-rich Low_complexity Low_complexity 2 89 0 183 234 0 0 chr3 19535572 19535649 -198501509 + C-rich Low_complexity Low_complexity 4 80 0 574 207 35 0 chr3 19537424 19537540 -198499618 - L2 LINE L2 -20 3293 3174 220 189 0 0 chr3 19538535 19538572 -198498586 + (TG)n Simple_repeat Simple_repeat 1 37 0 326 288 107 37 chr3 19538639 19538807 -198498351 + MIR SINE MIR 5 184 -67 243 0 0 0 chr3 19539063 19539090 -198498068 + (TG)n Simple_repeat Simple_repeat 2 28 0 306 217 0 0 chr3 19539559 19539619 -198497539 - L2 LINE L2 -1 3271 3212 351 325 83 8 chr3 19539658 19539778 -198497380 + MIR SINE MIR 21 149 -113 266 260 10 70 chr3 19541064 19541164 -198495994 + MIR SINE MIR 168 261 -1 244 310 28 0 chr3 19541319 19541390 -198495768 + MIR3 SINE MIR 109 181 -27 774 255 53 53 chr3 19541399 19541646 -198495512 + MIR SINE MIR 4 250 -12 263 321 80 18 chr3 19542376 19542488 -198494670 + MIR SINE MIR 32 150 -112 206 351 70 9 chr3 19542682 19542796 -198494362 - MIR SINE MIR -55 207 87 203 273 0 0 chr3 19543178 19543222 -198493936 + L2 LINE L2 3251 3294 -19 182 401 29 22 chr3 19544257 19544394 -198492764 + L2 LINE L2 2256 2393 -921 215 125 0 0 chr3 19544583 19544615 -198492543 + L2 LINE L2 3206 3237 -35 502 305 73 0 chr3 19544866 19545017 -198492141 - MIR SINE MIR -22 240 79 482 263 8 49 chr3 19545272 19545464 -198491694 + MIR SINE MIR 2 178 -58 829 168 65 0 chr3 19545465 19545650 -198491508 + L1MC1 LINE L1 6107 6303 -30 292 330 19 0 chr3 19546513 19546619 -198490539 - MIR SINE MIR -63 145 38 571 335 64 4 chr3 19547229 19547480 -198489678 - Charlie8 DNA MER1_type -2141 276 11 211 321 66 29 chr3 19548277 19548414 -198488744 + MIR3 SINE MIR 8 149 -59 583 294 43 13 chr3 19548613 19548844 -198488314 - L2 LINE L2 0 3313 3076 180 318 16 16 chr3 19550335 19550398 -198486760 + L2 LINE L2 1375 1437 -1877 195 344 57 13 chr3 19550425 19550582 -198486576 + L2 LINE L2 1631 1794 -1520 516 281 180 19 chr3 19550583 19551201 -198485957 - L2 LINE L2 -294 3019 2268 1798 146 3 72 chr3 19551914 19552249 -198484909 - AluSx SINE Alu 0 312 1 1438 193 10 30 chr3 19552272 19552444 -198484714 - AluJo SINE Alu -23 289 124 2244 90 0 13 chr3 19552444 19552743 -198484415 + AluY SINE Alu 1 295 -16 1438 193 10 30 chr3 19552743 19552865 -198484293 - AluJo SINE Alu -188 124 1 777 176 8 0 chr3 19552879 19553004 -198484154 - FLAM_C SINE Alu -17 126 1 335 315 52 37 chr3 19553122 19553289 -198483869 + MIR SINE MIR 18 189 -60 191 333 14 14 chr3 19553683 19553752 -198483406 - L3 LINE CR1 -526 1051 983 217 319 90 52 chr3 19554192 19554346 -198482812 + MIR SINE MIR 7 177 -58 632 239 60 50 chr3 19555139 19555357 -198481801 - MIR SINE MIR -3 259 40 510 303 196 38 chr3 19555984 19556301 -198480857 - L3 LINE CR1 -19 1558 1192 496 225 110 6 chr3 19556350 19556523 -198480635 + MER117 DNA MER1_type 7 197 0 356 344 134 16 chr3 19556564 19556750 -198480408 - L3 LINE CR1 -507 1070 863 394 266 77 24 chr3 19556757 19556926 -198480232 - L1ME LINE L1 -322 5799 5622 255 277 0 43 chr3 19557502 19557596 -198479562 - L1ME LINE L1 -563 5558 5469 193 323 30 30 chr3 19557904 19558003 -198479155 - L2 LINE L2 -790 2524 2426 251 380 60 7 chr3 19559240 19559390 -198477768 - MIR3 SINE MIR -32 176 19 351 337 118 17 chr3 19560158 19560346 -198476812 + MIR SINE MIR 9 208 -41 1150 235 104 3 chr3 19560348 19560693 -198476465 - MLT1B LTR MaLR 0 390 11 2396 63 0 3 chr3 19560770 19561069 -198476089 - AluY SINE Alu -13 298 1 515 315 43 30 chr3 19561131 19561366 -198475792 - L2 LINE L2 -4 3309 3072 414 312 112 36 chr3 19563378 19563654 -198473504 - L2 LINE L2 0 3313 3017 267 250 13 40 chr3 19565566 19565642 -198471516 + MIR3 SINE MIR 106 179 -29 577 258 20 7 chr3 19565721 19565888 -198471270 - MIR SINE MIR -58 150 12 2336 91 0 0 chr3 19566157 19566455 -198470703 + AluSx SINE Alu 1 298 -14 625 321 51 4 chr3 19569674 19569911 -198467247 + MIR SINE MIR 15 262 0 251 270 14 0 chr3 19570125 19570199 -198466959 - L1ME LINE L1 -506 5656 5582 377 271 16 16 chr3 19570590 19570712 -198466446 + MIR SINE MIR 21 142 -120 188 369 31 11 chr3 19570850 19571031 -198466127 - MIR SINE MIR -3 259 5 296 367 51 6 chr3 19571380 19571538 -198465620 + L3 LINE CR1 1391 1555 -22 189 366 0 24 chr3 19571872 19571954 -198465204 - MIR SINE MIR -28 234 155 317 305 122 24 chr3 19572311 19572524 -198464634 + L3 LINE CR1 1344 1577 0 411 220 40 0 chr3 19572611 19572711 -198464447 - MLT1K LTR MaLR 0 588 485 724 248 0 0 chr3 19573076 19573209 -198463949 + FLAM_A SINE Alu 1 133 0 271 309 36 18 chr3 19573802 19573912 -198463246 + MIR SINE MIR 28 139 -123 224 208 183 0 chr3 19573904 19574011 -198463147 + L2 LINE L2 2922 3061 -252 * 382 355 113 5 chr3 19574138 19574324 -198462834 - MIR SINE MIR -52 210 5 301 196 18 0 chr3 19574413 19574469 -198462689 + L2 LINE L2 3256 3312 -1 254 286 48 9 chr3 19574497 19574602 -198462556 - MLT1I LTR MaLR -242 167 59 570 225 33 13 chr3 19576063 19576214 -198460944 - Charlie8 DNA MER1_type -2225 192 39 2035 137 3 0 chr3 19577058 19577358 -198459800 - AluSx SINE Alu -11 301 1 808 261 26 13 chr3 19581659 19581885 -198455273 + MIR SINE MIR 10 238 -24 378 268 33 0 chr3 19582463 19582602 -198454556 - MLT1J LTR MaLR -278 186 63 448 291 72 52 chr3 19583267 19583573 -198453585 + MER113 DNA MER1_type? 111 422 -99 189 0 0 0 chr3 19584547 19584568 -198452590 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1792 136 0 21 chr3 19584568 19584854 -198452304 - AluJb SINE Alu -32 280 1 209 360 35 0 chr3 19584893 19584979 -198452179 + L3 LINE CR1 1160 1248 -329 339 338 20 13 chr3 19585192 19585343 -198451815 - MIR3 SINE MIR -34 174 23 26 0 0 0 chr3 19585543 19585569 -198451589 + AT_rich Low_complexity Low_complexity 1 26 0 3930 195 20 0 chr3 19585605 19586309 -198450849 + L1MC1 LINE L1 5616 6333 0 514 344 100 17 chr3 19586484 19586845 -198450313 - L1MC4a LINE L1 -1910 5898 5508 308 273 148 8 chr3 19587120 19587248 -198449910 - MIR SINE MIR -70 192 47 343 336 28 0 chr3 19587305 19587412 -198449746 + MIR SINE MIR 117 226 -36 248 123 247 27 chr3 19589330 19589403 -198447755 + MIR SINE MIR 46 134 -128 621 291 92 46 chr3 19590108 19590609 -198446549 - MLT1K LTR MaLR -63 525 2 1430 12 0 0 chr3 19590688 19590851 -198446307 - AluYb8 SINE Alu -1 317 155 383 288 169 0 chr3 19590892 19591069 -198446089 + MIR SINE MIR 22 228 -34 229 323 81 0 chr3 19592152 19592276 -198444882 + MIR SINE MIR 36 169 -93 404 283 169 22 chr3 19593131 19593315 -198443843 + Charlie8 DNA MER1_type 1 211 -2206 1095 223 38 0 chr3 19596231 19596442 -198440716 - MER20 DNA MER1_type 0 219 1 309 82 0 0 chr3 19600693 19600742 -198436416 + (T)n Simple_repeat Simple_repeat 1 49 0 195 42 0 0 chr3 19602176 19602200 -198434958 + (CCA)n Simple_repeat Simple_repeat 2 25 0 261 75 0 0 chr3 19602894 19602934 -198434224 + (TA)n Simple_repeat Simple_repeat 1 40 0 296 365 153 6 chr3 19607413 19608093 -198429065 + L2 LINE L2 1901 2680 -634 1445 164 53 4 chr3 19608093 19608356 -198428802 - AluJb SINE Alu -36 276 1 251 288 9 27 chr3 19609039 19609150 -198428008 + MER103 DNA DNA 1 109 -57 1071 163 24 14 chr3 19609935 19610144 -198427014 + AluJb SINE Alu 85 295 -17 215 269 6 50 chr3 19610421 19610603 -198426555 + G-rich Low_complexity Low_complexity 4 177 0 2307 233 19 42 chr3 19611446 19612013 -198425145 + MLT2B3 LTR ERVL 1 554 0 1226 311 118 62 chr3 19612641 19613469 -198423689 + L1M4 LINE L1 2199 3255 -2891 2101 136 0 3 chr3 19613469 19613779 -198423379 + AluSx SINE Alu 1 309 -3 1226 311 118 62 chr3 19613779 19614185 -198422973 + L1M4 LINE L1 3255 3637 -2509 303 174 16 36 chr3 19614591 19614673 -198422485 - AluJ/FLAM SINE Alu -242 60 5 504 343 171 0 chr3 19614673 19614867 -198422291 + L1M4 LINE L1 4210 4369 -1777 1657 182 17 3 chr3 19614867 19615164 -198421994 + AluJo SINE Alu 1 301 -11 504 343 171 0 chr3 19615164 19615278 -198421880 + L1M4 LINE L1 4369 4571 -1575 396 364 48 0 chr3 19615406 19615571 -198421587 + L1M4 LINE L1 4742 4914 -1232 287 239 11 22 chr3 19615979 19616071 -198421087 - LTR41 LTR ERVL -666 107 17 715 229 0 8 chr3 19616589 19616720 -198420438 - FRAM SINE Alu -46 130 1 892 329 38 11 chr3 19616883 19617354 -198419804 - ERVL LTR ERVL -699 5065 4582 313 315 92 15 chr3 19617356 19617486 -198419672 - L1MC4a LINE L1 -1605 6203 6064 22 56 0 0 chr3 19617965 19618001 -198419157 + AT_rich Low_complexity Low_complexity 1 36 0 199 253 46 81 chr3 19618217 19618304 -198418854 + MIR3 SINE MIR 91 174 -34 4029 136 87 48 chr3 19618755 19620017 -198417141 - pTR5 LTR ERV1 -143 2295 741 1000 204 52 126 chr3 19620451 19620693 -198416465 - MLT1B LTR MaLR 0 390 191 2212 94 3 0 chr3 19620693 19620990 -198416168 - AluSx SINE Alu -14 298 1 1000 204 52 126 chr3 19620990 19621168 -198415990 - MLT1B LTR MaLR -199 191 1 827 218 0 0 chr3 19621211 19621353 -198415805 - FRAM SINE Alu -19 157 16 1186 199 53 115 chr3 19621390 19621645 -198415513 + L1MB4 LINE L1 5668 5869 -311 1634 176 49 0 chr3 19621645 19621929 -198415229 + AluJo SINE Alu 1 298 -14 1186 199 53 115 chr3 19621929 19622223 -198414935 + L1MB4 LINE L1 5869 6180 0 2256 109 0 13 chr3 19622457 19622770 -198414388 + AluSx SINE Alu 2 310 -2 330 359 62 0 chr3 19623238 19623366 -198413792 - MER5B DNA MER1_type -40 138 3 3295 98 35 8 chr3 19623569 19624049 -198413109 + LTR15 LTR ERV1 1 493 0 360 0 0 0 chr3 19624916 19624956 -198412202 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 297 27 14 chr3 19625238 19625312 -198411846 - L2 LINE L2 -333 2980 2906 254 273 91 9 chr3 19627128 19627238 -198409920 - L2 LINE L2 -171 3142 3024 231 287 35 11 chr3 19627553 19627640 -198409518 - L3 LINE CR1 -355 1222 1134 180 317 58 48 chr3 19627774 19627878 -198409280 + MIR3 SINE MIR 97 201 -7 229 279 29 0 chr3 19628857 19628925 -198408233 - L2 LINE L2 -2 3311 3242 673 257 36 28 chr3 19631003 19631252 -198405906 - L1MA7 LINE L1 -146 6145 5895 578 216 18 0 chr3 19631252 19631363 -198405795 + L1MA7 LINE L1 6173 6285 -6 6184 103 66 10 chr3 19633995 19634898 -198402260 - LTR13 LTR ERVK 0 954 1 289 286 171 6 chr3 19635184 19635359 -198401799 - L2 LINE L2 -171 3142 2939 199 322 35 11 chr3 19635524 19635611 -198401547 - L3 LINE CR1 -355 1222 1134 2482 55 3 0 chr3 19635977 19636285 -198400873 - AluY SINE Alu -2 309 1 1042 192 138 100 chr3 19637183 19637637 -198399521 - LTR10B LTR ERV1 -5 542 63 2433 42 0 0 chr3 19637637 19637944 -198399214 - AluY SINE Alu 0 307 1 1042 192 138 100 chr3 19637944 19638010 -198399148 - LTR10B LTR ERV1 -484 63 1 216 306 0 47 chr3 19638200 19638285 -198398873 + MIR SINE MIR 65 145 -117 2285 95 0 0 chr3 19639411 19639716 -198397442 - AluY SINE Alu -6 305 1 261 0 0 0 chr3 19646569 19646598 -198390560 + (A)n Simple_repeat Simple_repeat 1 29 0 766 203 0 0 chr3 19646611 19646739 -198390419 + FLAM_C SINE Alu 2 129 -14 459 310 58 0 chr3 19647352 19647507 -198389651 + MIR SINE MIR 21 184 -78 250 238 16 16 chr3 19647902 19647965 -198389193 + MIR SINE MIR 200 262 0 307 293 73 14 chr3 19648430 19648594 -198388564 + MIR SINE MIR 29 207 -55 2340 69 10 3 chr3 19649518 19649824 -198387334 - AluSp SINE Alu -5 308 1 194 286 0 18 chr3 19650175 19650231 -198386927 - L2 LINE L2 -8 3264 3210 438 320 67 22 chr3 19650345 19650501 -198386657 + L1ME4a LINE L1 5567 5737 -384 2257 113 0 3 chr3 19650501 19650812 -198386346 + AluSq SINE Alu 1 310 -3 438 320 67 22 chr3 19650812 19650880 -198386278 + L1ME4a LINE L1 5737 5801 -320 317 182 15 0 chr3 19650941 19651010 -198386148 - L1MD1 LINE L1 -40 8002 6116 283 280 0 40 chr3 19651638 19651738 -198385420 - MIR SINE MIR -132 130 35 7071 52 16 9 chr3 19652160 19653688 -198383470 + SVA Other Other 5 1386 0 279 0 0 0 chr3 19653697 19653728 -198383430 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 362 316 43 32 chr3 19653957 19654112 -198383046 + L1ME4a LINE L1 5933 6092 -29 2200 107 3 0 chr3 19654112 19654412 -198382746 - AluSp SINE Alu -12 301 1 362 316 43 32 chr3 19654412 19654443 -198382715 + L1ME4a LINE L1 6092 6121 0 246 267 0 0 chr3 19654591 19654666 -198382492 + L1ME4a LINE L1 6046 6120 -1 583 277 93 6 chr3 19654919 19655153 -198382005 - MIR SINE MIR -3 259 4 2400 132 22 0 chr3 19655216 19655572 -198381586 - THE1B LTR MaLR 0 364 1 9249 98 42 44 chr3 19655572 19657059 -198380099 - THE1B-int LTR MaLR 0 1580 97 456 61 15 0 chr3 19657059 19657125 -198380033 - THE1B-int LTR MaLR -1427 153 87 1729 161 99 28 chr3 19657125 19657695 -198379463 + MER51B LTR ERV1 1 376 -1 550 96 24 0 chr3 19657695 19657778 -198379380 - THE1B-int LTR MaLR -1495 85 1 2233 144 28 3 chr3 19657778 19658133 -198379025 - THE1B LTR MaLR 0 364 1 1051 223 8 12 chr3 19658652 19658903 -198378255 - AluJo SINE Alu -52 260 11 745 204 0 0 chr3 19658914 19659046 -198378112 - FLAM_C SINE Alu -1 132 1 892 246 234 8 chr3 19659348 19659436 -198377722 - L1P4 LINE L1 -458 5716 5649 2054 121 0 3 chr3 19659436 19659733 -198377425 - AluSq SINE Alu -17 296 1 892 246 234 8 chr3 19659733 19659999 -198377159 - L1P4 LINE L1 -525 5649 5294 1757 180 0 0 chr3 19660002 19660296 -198376862 - AluJo SINE Alu -18 294 1 543 175 0 35 chr3 19660364 19660478 -198376680 + AluJb SINE Alu 203 312 0 845 147 0 0 chr3 19660492 19660621 -198376537 + FLAM_A SINE Alu 8 136 -6 226 324 14 0 chr3 19660668 19660742 -198376416 + MIR SINE MIR 110 184 -78 190 220 77 5 chr3 19662021 19662130 -198375028 - MIR SINE MIR -14 248 86 1541 148 139 3 chr3 19663718 19664021 -198373137 - MER4E LTR ERV1 -8 758 415 288 194 0 45 chr3 19664025 19664092 -198373066 - MER4D LTR ERV1 -808 64 1 1830 169 3 0 chr3 19664298 19664600 -198372558 - AluSx SINE Alu -9 303 1 766 206 24 35 chr3 19664603 19664773 -198372385 - FAM SINE Alu -7 168 1 256 309 74 0 chr3 19666221 19666302 -198370856 + MIR SINE MIR 111 197 -65 1309 158 65 15 chr3 19667307 19667567 -198369591 - AluJb SINE Alu -21 291 19 552 126 58 39 chr3 19667780 19667883 -198369275 - AluSg/x SINE Alu -15 294 190 354 217 178 38 chr3 19669603 19669760 -198367398 + MIR SINE MIR 13 191 -71 662 227 117 0 chr3 19669762 19669925 -198367233 - MER46C DNA MER2_type 0 338 157 516 161 11 0 chr3 19669937 19670024 -198367134 + MER2 DNA MER2_type 1 88 -257 365 250 155 0 chr3 19670040 19670156 -198367002 - MER46C DNA MER2_type -199 139 6 210 313 0 30 chr3 19670615 19670682 -198366476 - L2 LINE L2 0 3313 3249 492 253 131 15 chr3 19670883 19671083 -198366075 + MIR SINE MIR 28 251 -11 390 283 71 47 chr3 19671542 19671754 -198365404 - Charlie8 DNA MER1_type -2180 237 21 274 234 0 0 chr3 19672745 19672809 -198364349 + L1ME4a LINE L1 5683 5746 -2062 259 281 74 25 chr3 19673081 19673202 -198363956 + L1ME4a LINE L1 5979 6105 -16 2200 106 0 13 chr3 19673278 19673590 -198363568 + AluSx SINE Alu 1 308 -4 1693 175 65 19 chr3 19673595 19674083 -198363075 + L1MB3 LINE L1 5577 6143 -40 2220 98 0 13 chr3 19674083 19674388 -198362770 + AluSx SINE Alu 1 301 -11 1129 137 17 0 chr3 19674726 19674901 -198362257 - AluJb SINE Alu -14 298 121 489 277 9 95 chr3 19675491 19675594 -198361564 - MIR SINE MIR -13 249 175 2222 98 0 10 chr3 19675594 19675899 -198361259 + AluSc SINE Alu 1 302 -7 489 277 9 95 chr3 19675899 19676026 -198361132 - MIR SINE MIR -87 175 39 1670 121 68 8 chr3 19676035 19676300 -198360858 + AluJb SINE Alu 23 303 -9 277 254 0 0 chr3 19676484 19676539 -198360619 - Tigger5 DNA MER2_type 0 2323 2269 286 172 250 0 chr3 19676574 19676638 -198360520 - Tigger5 DNA MER2_type -2243 80 1 609 287 39 17 chr3 19676771 19677001 -198360157 - MIR SINE MIR -7 255 21 352 241 200 14 chr3 19677429 19677574 -198359584 + MIR SINE MIR 19 190 -72 259 288 0 12 chr3 19677620 19677700 -198359458 + MIR SINE MIR 184 262 0 216 259 17 0 chr3 19677698 19677756 -198359402 - MIR SINE MIR -124 138 80 * 2195 109 3 0 chr3 19677792 19678096 -198359062 - AluSx SINE Alu -5 307 3 1571 184 139 17 chr3 19678106 19678459 -198358699 + MSTD LTR MaLR 1 396 0 754 0 0 0 chr3 19678481 19678566 -198358592 - L1PA6 LINE L1 -6 6148 6064 929 120 0 8 chr3 19678576 19678701 -198358457 - FLAM_C SINE Alu -9 124 1 3361 194 75 93 chr3 19678703 19678812 -198358346 + L1MC4 LINE L1 6118 6227 -1815 1730 115 30 54 chr3 19678812 19678973 -198358185 - AluSx SINE Alu -19 293 141 2489 43 0 7 chr3 19678973 19679278 -198357880 - AluY SINE Alu -8 303 1 1730 115 30 54 chr3 19679278 19679412 -198357746 - AluSx SINE Alu -171 141 5 3361 194 75 93 chr3 19679412 19680143 -198357015 + L1MC4 LINE L1 6227 6933 -1109 1602 167 14 21 chr3 19680143 19680431 -198356727 + AluJb SINE Alu 15 300 -12 3361 194 75 93 chr3 19680431 19680933 -198356225 + L1MC4 LINE L1 6933 7442 -600 213 284 14 27 chr3 19680974 19681048 -198356110 + MIR SINE MIR 175 247 -15 1102 166 0 0 chr3 19681308 19681477 -198355681 - AluSq SINE Alu -11 302 134 2308 87 0 0 chr3 19681477 19681776 -198355382 - AluSx SINE Alu -13 299 1 338 252 195 8 chr3 19681780 19681903 -198355255 - MIR SINE MIR -115 147 2 291 271 25 66 chr3 19682253 19682430 -198354728 - MIR SINE MIR -63 145 10 253 261 38 0 chr3 19683006 19683101 -198354057 - MIR SINE MIR -31 177 80 902 146 0 7 chr3 19684442 19684586 -198352572 - FLAM_C SINE Alu 0 143 1 231 270 157 11 chr3 19687020 19687109 -198350049 - MIR SINE MIR -80 182 81 480 333 25 0 chr3 19687742 19687901 -198349257 - MIR SINE MIR -14 248 86 367 342 50 6 chr3 19688242 19688403 -198348755 - MIR SINE MIR -70 192 25 351 288 79 7 chr3 19688993 19689132 -198348026 + MIR SINE MIR 35 183 -79 436 274 32 14 chr3 19689864 19690040 -198347118 + MIR SINE MIR 38 219 -43 2610 17 0 0 chr3 19690043 19690337 -198346821 + AluYb8 SINE Alu 20 313 -5 1173 137 0 0 chr3 19690337 19690512 -198346646 + AluSg/x SINE Alu 132 306 -4 2143 108 9 22 chr3 19690519 19690835 -198346323 + AluSx SINE Alu 1 312 0 2115 97 0 39 chr3 19690846 19691156 -198346002 + AluSg SINE Alu 1 298 -12 950 277 183 44 chr3 19691281 19691740 -198345418 + MER115 DNA AcHobo 3 525 -168 556 242 199 5 chr3 19691755 19691941 -198345217 + L1ME1 LINE L1 5928 6149 -17 322 271 52 0 chr3 19691954 19692050 -198345108 + MER115 DNA AcHobo 513 613 -80 180 326 53 0 chr3 19692993 19693088 -198344070 + L2 LINE L2 2658 2757 -557 284 224 106 64 chr3 19693337 19693436 -198343722 - L2 LINE L2 -24 3248 3146 261 294 104 50 chr3 19693432 19693653 -198343505 + L2 LINE L2 2313 2545 -769 * 197 325 86 57 chr3 19693784 19694190 -198342968 + L2 LINE L2 2830 3247 -25 355 237 15 74 chr3 19694789 19694924 -198342234 + MLT1J LTR MaLR 99 225 -286 335 257 35 44 chr3 19695084 19695197 -198341961 + MIR SINE MIR 25 136 -126 978 152 11 42 chr3 19695673 19695864 -198341294 - MER5A DNA MER1_type -4 185 1 428 247 173 56 chr3 19695875 19696037 -198341121 + MER5A DNA MER1_type 4 184 -5 632 219 71 47 chr3 19696056 19696225 -198340933 - MER5B DNA MER1_type -5 173 1 253 272 82 89 chr3 19696234 19696392 -198340766 + MER5B DNA MER1_type 2 158 -20 199 191 40 143 chr3 19696375 19696396 -198340762 + L2 LINE L2 681 703 -2611 * 1481 175 90 0 chr3 19696396 19696664 -198340494 - AluJo SINE Alu -6 306 15 199 191 40 143 chr3 19696664 19696768 -198340390 + L2 LINE L2 703 793 -2521 1720 254 112 35 chr3 19696781 19697140 -198340018 + MER20B DNA MER1_type 40 370 -413 2349 123 0 0 chr3 19697140 19697450 -198339708 + AluSx SINE Alu 1 310 -2 1720 254 112 35 chr3 19697450 19697778 -198339380 + MER20B DNA MER1_type 370 780 -3 264 234 62 0 chr3 19697987 19698051 -198339107 + MER5B DNA MER1_type 111 178 0 2245 99 0 32 chr3 19698243 19698556 -198338602 - AluSq SINE Alu -10 303 1 1468 221 115 17 chr3 19698560 19698968 -198338190 + LTR16C LTR ERVL 41 488 -3 259 196 0 0 chr3 19699308 19699354 -198337804 - LTR16C LTR ERVL -11 480 435 1593 116 81 149 chr3 19699355 19699436 -198337722 + Tigger3(Golem) DNA MER2_type 1 86 -2942 2133 112 0 10 chr3 19699436 19699739 -198337419 + AluY SINE Alu 1 300 -11 1593 116 81 149 chr3 19699739 19700027 -198337131 + Tigger3(Golem) DNA MER2_type 86 3025 -3 506 227 36 0 chr3 19700164 19700274 -198336884 + MIR SINE MIR 60 173 -89 2341 78 3 0 chr3 19700377 19700681 -198336477 - AluY SINE Alu 0 305 1 426 333 79 11 chr3 19700814 19700991 -198336167 - MER5A DNA MER1_type 0 189 1 342 231 120 0 chr3 19701273 19701381 -198335777 + Charlie8 DNA MER1_type 1 121 -2296 2262 121 0 3 chr3 19701390 19701695 -198335463 + AluSx SINE Alu 1 304 -8 2159 123 6 19 chr3 19701717 19702033 -198335125 + AluSx SINE Alu 1 312 0 990 270 175 11 chr3 19702033 19702388 -198334770 - MER45C DNA AcHobo -93 860 448 880 223 67 57 chr3 19702520 19702803 -198334355 - MER45C DNA AcHobo -667 286 1 2347 103 0 7 chr3 19702830 19703132 -198334026 - AluSx SINE Alu -12 300 1 244 291 82 55 chr3 19703189 19703299 -198333859 - MIR SINE MIR -97 165 53 868 138 36 7 chr3 19703322 19703460 -198333698 + AluJb SINE Alu 121 262 -50 272 27 27 0 chr3 19703461 19703498 -198333660 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1132 83 0 0 chr3 19703498 19703631 -198333527 + AluY SINE Alu 1 133 -178 2601 52 0 10 chr3 19703648 19703955 -198333203 + AluY SINE Alu 1 304 -7 266 194 97 65 chr3 19703991 19704012 -198333146 + MIR SINE MIR 131 150 -112 2134 106 25 0 chr3 19704012 19704323 -198332835 + AluSp SINE Alu 1 313 0 266 194 97 65 chr3 19704323 19704394 -198332764 + MIR SINE MIR 150 226 -36 * 683 286 44 16 chr3 19704387 19704635 -198332523 + MIR SINE MIR 8 262 0 2752 17 0 0 chr3 19704838 19705136 -198332022 + AluY SINE Alu 11 308 -3 1402 180 75 0 chr3 19705195 19705500 -198331658 - L1MB5 LINE L1 0 6174 5847 1111 172 72 0 chr3 19705756 19705965 -198331193 - L1MB5 LINE L1 -397 5786 5563 22 35 0 0 chr3 19706361 19706390 -198330768 + AT_rich Low_complexity Low_complexity 1 29 0 1879 128 40 47 chr3 19706395 19706691 -198330467 + AluSx SINE Alu 3 296 -16 2153 92 50 0 chr3 19706693 19706974 -198330184 + AluSg SINE Alu 1 295 -15 849 292 48 15 chr3 19706977 19707309 -198329849 + L1ME LINE L1 5398 5740 -381 1743 182 3 20 chr3 19707411 19707708 -198329450 + AluJo SINE Alu 1 292 -20 394 296 0 0 chr3 19707708 19707796 -198329362 - L1MC4 LINE L1 -1340 6702 6615 * 396 324 9 0 chr3 19707781 19707892 -198329266 + L1MC4 LINE L1 6614 6725 -1317 1402 221 61 0 chr3 19708183 19708477 -198328681 - AluJb SINE Alu 0 312 1 1458 228 14 0 chr3 19708580 19708861 -198328297 + AluJo SINE Alu 3 287 -25 640 130 11 0 chr3 19708943 19709035 -198328123 + AluJb SINE Alu 34 126 -186 1968 172 0 3 chr3 19709036 19709344 -198327814 + AluSg SINE Alu 1 307 -3 706 214 8 8 chr3 19709346 19709477 -198327681 - MER5A DNA MER1_type -56 133 3 2469 80 0 0 chr3 19709627 19709927 -198327231 - AluY SINE Alu -11 300 1 250 315 14 0 chr3 19709996 19710069 -198327089 - L1ME LINE L1 -476 5645 5572 1826 129 96 7 chr3 19710081 19710352 -198326806 - AluSq SINE Alu -18 295 1 238 289 145 0 chr3 19710419 19710495 -198326663 - L2 LINE L2 0 3272 3186 221 167 0 0 chr3 19710493 19710529 -198326629 - MIR SINE MIR -83 179 144 * 61 37 0 0 chr3 19710531 19710613 -198326545 + AT_rich Low_complexity Low_complexity 1 82 0 292 195 12 69 chr3 19710614 19710652 -198326506 - MIR SINE MIR -64 144 120 2053 143 0 7 chr3 19710652 19710952 -198326206 + AluSx SINE Alu 1 298 -14 292 195 12 69 chr3 19710952 19710993 -198326165 - MIR SINE MIR -88 120 78 2279 116 7 7 chr3 19711243 19711553 -198325605 - AluJo SINE Alu -1 311 2 200 268 29 0 chr3 19711800 19711875 -198325283 + MIR SINE MIR 106 143 -65 1349 279 45 20 chr3 19711875 19712002 -198325156 + HERV16 LTR ERVL 2323 2445 -2551 2186 128 48 31 chr3 19712002 19712360 -198324798 + THE1B LTR MaLR 1 364 0 1349 279 45 20 chr3 19712360 19712672 -198324486 + HERV16 LTR ERVL 2445 2773 -2223 2519 74 0 7 chr3 19712711 19713021 -198324137 + AluY SINE Alu 1 308 -3 1681 135 45 28 chr3 19713025 19713313 -198323845 + L1PA16 LINE L1 5869 6161 -5 2237 83 9 74 chr3 19713488 19713814 -198323344 + AluSq SINE Alu 2 306 -7 23 33 0 0 chr3 19713843 19713873 -198323285 + AT_rich Low_complexity Low_complexity 1 30 0 1129 152 0 0 chr3 19714146 19714311 -198322847 - AluJb SINE Alu -16 296 132 268 193 239 0 chr3 19714321 19714409 -198322749 + L1ME3 LINE L1 6052 6160 -2 1936 117 30 0 chr3 19714420 19714686 -198322472 + AluSx SINE Alu 1 274 -38 189 74 0 0 chr3 19714698 19714725 -198322433 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 608 308 72 21 chr3 19714824 19715103 -198322055 - L2 LINE L2 -829 2485 2193 1259 247 29 50 chr3 19715103 19715166 -198321992 + L1ME3 LINE L1 5472 5535 -627 1972 160 13 0 chr3 19715166 19715472 -198321686 - AluJb SINE Alu -2 310 1 1259 247 29 50 chr3 19715472 19715656 -198321502 + L1ME3 LINE L1 5535 5721 -441 2203 130 0 0 chr3 19715656 19715957 -198321201 + AluSq SINE Alu 1 301 -12 1259 247 29 50 chr3 19715957 19716206 -198320952 + L1ME3 LINE L1 5721 5945 -217 835 128 35 35 chr3 19716206 19716347 -198320811 + AluJo SINE Alu 6 146 -166 2355 95 0 0 chr3 19716347 19716641 -198320517 + AluSx SINE Alu 1 294 -18 1918 192 55 101 chr3 19716641 19717236 -198319922 - L1MC4a LINE L1 -180 7628 7068 2050 177 0 0 chr3 19717236 19717546 -198319612 - AluJb SINE Alu -2 310 1 1918 192 55 101 chr3 19717546 19717642 -198319516 - L1MC4a LINE L1 -740 7068 6969 862 137 0 30 chr3 19717644 19717775 -198319383 + AluJb SINE Alu 1 127 -185 441 0 0 0 chr3 19719170 19719219 -198317939 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5582 170 38 142 chr3 19719241 19719769 -198317389 - L1MC4a LINE L1 -831 6977 6396 2265 110 3 0 chr3 19719769 19720068 -198317090 - AluSx SINE Alu -12 300 1 5582 170 38 142 chr3 19720068 19720882 -198316276 - L1MC4a LINE L1 -1412 6396 5702 889 198 64 0 chr3 19720882 19721054 -198316104 - AluJb SINE Alu -12 300 118 5582 170 38 142 chr3 19721054 19721453 -198315705 - L1MC4a LINE L1 -2106 5702 5263 * 6199 144 96 76 chr3 19721426 19721660 -198315498 - L1MC3 LINE L1 0 7785 7557 2412 95 0 9 chr3 19721660 19721975 -198315183 - AluSx SINE Alu 0 312 1 6199 144 96 76 chr3 19721975 19722053 -198315105 - L1MC3 LINE L1 -228 7557 7482 2289 113 24 34 chr3 19722053 19722432 -198314726 - THE1C LTR MaLR 0 375 1 6199 144 96 76 chr3 19722432 19722727 -198314431 - L1MC3 LINE L1 -303 7482 7194 335 286 0 0 chr3 19722727 19722818 -198314340 - MLT1F1 LTR MaLR -442 125 35 6199 144 96 76 chr3 19722818 19723042 -198314116 - L1MC3 LINE L1 -591 7194 6976 423 0 0 0 chr3 19723042 19723089 -198314069 + (TG)n Simple_repeat Simple_repeat 2 48 0 6199 144 96 76 chr3 19723089 19723645 -198313513 - L1MC3 LINE L1 -809 6976 6276 1142 201 137 90 chr3 19723645 19724112 -198313046 + MER41B LTR ERV1 113 601 -34 2122 190 11 25 chr3 19724144 19724587 -198312571 - L1MC3 LINE L1 -1504 6281 5845 2275 82 0 3 chr3 19724588 19724880 -198312278 + AluY SINE Alu 1 291 -20 2198 120 10 0 chr3 19724917 19725218 -198311940 + AluSq SINE Alu 1 304 -9 249 33 0 0 chr3 19725218 19725248 -198311910 + (GGGGA)n Simple_repeat Simple_repeat 1 30 0 2761 137 169 20 chr3 19725248 19725803 -198311355 + MER67B LTR ERV1 2 639 -22 2614 162 39 25 chr3 19725847 19726268 -198310890 - L1MC3 LINE L1 -743 5403 5396 2318 86 20 0 chr3 19726268 19726560 -198310598 + AluSx SINE Alu 1 298 -14 2614 162 39 25 chr3 19726560 19726823 -198310335 - L1MC3 LINE L1 -750 5396 5138 2190 108 0 3 chr3 19726825 19727120 -198310038 + AluSc SINE Alu 1 294 -15 273 146 0 0 chr3 19727120 19727161 -198309997 - AluJo/FLAM SINE Alu -180 122 82 1141 197 5 23 chr3 19727163 19727381 -198309777 - AluJo SINE Alu -98 214 1 328 307 49 40 chr3 19727499 19727666 -198309492 + MIR SINE MIR 18 189 -60 1062 184 10 15 chr3 19729143 19729349 -198307809 + AluSg/x SINE Alu 96 300 -10 2517 67 0 0 chr3 19729351 19729648 -198307510 + AluY SINE Alu 1 297 -14 996 168 15 30 chr3 19729714 19729917 -198307241 + MER3 DNA MER1_type 10 209 0 534 287 97 51 chr3 19729940 19730232 -198306926 - L2 LINE L2 -70 3243 2933 2547 53 3 3 chr3 19730232 19730534 -198306624 + AluY SINE Alu 1 302 -9 534 287 97 51 chr3 19730534 19730572 -198306586 - L2 LINE L2 -380 2933 2898 2226 111 0 3 chr3 19730584 19730882 -198306276 + AluSc SINE Alu 1 297 -12 776 272 183 44 chr3 19731007 19731466 -198305692 + MER115 DNA AcHobo 3 525 -168 527 237 199 5 chr3 19731481 19731667 -198305491 + L1ME1 LINE L1 5928 6149 -17 312 271 52 0 chr3 19731680 19731776 -198305382 + MER115 DNA AcHobo 513 613 -80 284 223 106 64 chr3 19733068 19733162 -198303996 - L2 LINE L2 -29 3243 3146 236 290 104 50 chr3 19733158 19733379 -198303779 + L2 LINE L2 2313 2545 -769 * 197 325 86 57 chr3 19733510 19733916 -198303242 + L2 LINE L2 2830 3247 -25 355 237 15 74 chr3 19734515 19734650 -198302508 + MLT1J LTR MaLR 99 225 -286 335 257 35 44 chr3 19734810 19734923 -198302235 + MIR SINE MIR 25 136 -126 978 152 11 42 chr3 19735399 19735590 -198301568 - MER5A DNA MER1_type -4 185 1 428 247 173 56 chr3 19735601 19735763 -198301395 + MER5A DNA MER1_type 4 184 -5 632 219 71 47 chr3 19735782 19735951 -198301207 - MER5B DNA MER1_type -5 173 1 253 272 82 89 chr3 19735960 19736118 -198301040 + MER5B DNA MER1_type 2 158 -20 199 191 40 143 chr3 19736101 19736122 -198301036 + L2 LINE L2 681 703 -2611 * 1481 175 90 0 chr3 19736122 19736390 -198300768 - AluJo SINE Alu -6 306 15 199 191 40 143 chr3 19736390 19736494 -198300664 + L2 LINE L2 703 793 -2521 1720 254 112 35 chr3 19736507 19736866 -198300292 + MER20B DNA MER1_type 40 370 -413 2349 123 0 0 chr3 19736866 19737176 -198299982 + AluSx SINE Alu 1 310 -2 1720 254 112 35 chr3 19737176 19737504 -198299654 + MER20B DNA MER1_type 370 780 -3 264 234 62 0 chr3 19737713 19737777 -198299381 + MER5B DNA MER1_type 111 178 0 2055 125 0 32 chr3 19737969 19738282 -198298876 - AluSq SINE Alu -10 303 1 1478 221 115 17 chr3 19738286 19738694 -198298464 + LTR16C LTR ERVL 41 488 -3 259 196 0 0 chr3 19739034 19739080 -198298078 - LTR16C LTR ERVL -11 480 435 1593 116 81 149 chr3 19739081 19739162 -198297996 + Tigger3(Golem) DNA MER2_type 1 86 -2942 2561 56 0 10 chr3 19739162 19739465 -198297693 + AluY SINE Alu 1 300 -11 1593 116 81 149 chr3 19739465 19739753 -198297405 + Tigger3(Golem) DNA MER2_type 86 3025 -3 506 227 36 0 chr3 19739890 19740000 -198297158 + MIR SINE MIR 60 173 -89 2439 67 0 0 chr3 19740103 19740408 -198296750 - AluY SINE Alu 0 305 1 876 203 68 0 chr3 19740541 19740718 -198296440 - MER5A DNA MER1_type 0 189 1 585 227 147 90 chr3 19740999 19741116 -198296042 + MER102a DNA MER1_type 1 110 -1307 2321 116 0 0 chr3 19741116 19741419 -198295739 + AluSx SINE Alu 1 303 -9 585 227 147 90 chr3 19741419 19741431 -198295727 + MER102a DNA MER1_type 110 120 -1297 2145 128 20 0 chr3 19741431 19741737 -198295421 + AluSx SINE Alu 1 312 0 585 227 147 90 chr3 19741737 19741906 -198295252 + MER102a DNA MER1_type 120 317 -13 183 294 31 150 chr3 19742505 19742798 -198294360 + L2 LINE L2 2966 3223 -49 391 374 5 15 chr3 19743031 19743226 -198293932 + MIR SINE MIR 5 197 -65 216 279 0 16 chr3 19743660 19743721 -198293437 + L3b LINE CR1 1453 1512 -71 312 279 161 7 chr3 19743783 19743980 -198293178 + MIR SINE MIR 23 247 -15 216 323 149 29 chr3 19743963 19744239 -198292919 - L2 LINE L2 -11 3261 2953 * 720 269 11 34 chr3 19744270 19744490 -198292668 - MIR SINE MIR -12 250 33 383 238 51 75 chr3 19744617 19744786 -198292372 + MIR SINE MIR 19 183 -25 368 212 61 68 chr3 19744797 19744929 -198292229 + MIR3 SINE MIR 76 206 -2 2347 91 30 0 chr3 19746284 19746582 -198290576 + AluSx SINE Alu 1 307 -5 2236 129 0 10 chr3 19747077 19747388 -198289770 + AluSx SINE Alu 1 308 -4 238 253 115 0 chr3 19748315 19748402 -198288756 - HAL1 LINE L1 -1047 1460 1364 2250 97 0 52 chr3 19748747 19749076 -198288082 + AluSx SINE Alu 1 312 0 698 254 23 9 chr3 19749580 19749797 -198287361 - L1MC5 LINE L1 -36 7925 7706 392 167 0 33 chr3 19750801 19750891 -198286267 - AluJ/FRAM SINE Alu 0 302 216 198 297 68 0 chr3 19751321 19751395 -198285763 + L2 LINE L2 3160 3238 -34 349 317 62 21 chr3 19751571 19751716 -198285442 - MIR SINE MIR -22 240 90 2363 72 0 13 chr3 19751722 19752027 -198285131 - AluY SINE Alu -10 301 1 2157 208 32 11 chr3 19752027 19752551 -198284607 - L1MB3 LINE L1 -41 6142 5608 978 89 37 113 chr3 19753227 19753553 -198283605 - AluSx SINE Alu -1 301 1 1413 105 18 5 chr3 19753555 19753774 -198283384 - L1P5 LINE L1 -467 5687 5466 225 274 27 0 chr3 19753774 19753847 -198283311 + MIR SINE MIR 91 165 -97 194 266 147 0 chr3 19754823 19754932 -198282226 - MIR SINE MIR -83 179 55 286 327 92 33 chr3 19755879 19756032 -198281126 + L3 LINE CR1 1407 1568 -9 271 308 0 0 chr3 19757741 19757832 -198279326 + MIR SINE MIR 80 170 -92 310 266 101 69 chr3 19758198 19758386 -198278772 - MLT1J LTR MaLR -295 216 23 2266 92 0 3 chr3 19758805 19759099 -198278059 + AluSg SINE Alu 1 293 -17 277 146 0 0 chr3 19759099 19759140 -198278018 - AluJo/FLAM SINE Alu -180 122 82 1153 197 5 23 chr3 19759142 19759360 -198277798 - AluJo SINE Alu -98 214 1 300 311 51 37 chr3 19759489 19759645 -198277513 + MIR SINE MIR 30 189 -60 283 193 0 36 chr3 19760149 19760232 -198276926 + L1PB3 LINE L1 6069 6148 -6 183 211 96 0 chr3 19760330 19760382 -198276776 - MIR SINE MIR -88 174 118 2054 119 20 14 chr3 19760558 19760852 -198276306 - AluSx SINE Alu -16 296 1 310 189 40 0 chr3 19760852 19760926 -198276232 - L1M4 LINE L1 -1228 4918 4842 1705 168 3 18 chr3 19761373 19761678 -198275480 + AluJb SINE Alu 4 304 0 213 333 0 53 chr3 19762130 19762244 -198274914 + L2 LINE L2 3126 3233 -39 284 287 139 8 chr3 19762248 19762370 -198274788 - MIR SINE MIR -60 202 65 418 143 71 10 chr3 19762764 19762862 -198274296 - L1MA1 LINE L1 -417 5885 5782 366 228 89 0 chr3 19762862 19762941 -198274217 - L1MC4 LINE L1 -1344 6698 6613 309 212 45 0 chr3 19762905 19762971 -198274187 + L1MCa LINE L1 1996 2064 -4362 * 237 81 0 0 chr3 19762977 19763014 -198274144 - L1MA1 LINE L1 -508 5789 5753 597 316 55 51 chr3 19763038 19763117 -198274041 - L1ME3A LINE L1 -206 5964 5887 2563 153 43 6 chr3 19763117 19763608 -198273550 - L1MB3 LINE L1 -3 6180 5672 597 316 55 51 chr3 19763608 19764018 -198273140 - L1ME3A LINE L1 -283 5887 5473 584 228 82 19 chr3 19764719 19764877 -198272281 - MIR SINE MIR -11 251 84 1046 264 140 42 chr3 19764978 19765520 -198271638 - MLT1G1 LTR MaLR 0 595 1 181 317 0 61 chr3 19766562 19766644 -198270514 - L2 LINE L2 -2901 413 337 1833 171 96 10 chr3 19767039 19767424 -198269734 + MSTA LTR MaLR 11 428 0 2378 87 10 0 chr3 19767443 19767743 -198269415 - AluSx SINE Alu -9 303 1 380 224 21 18 chr3 19767744 19767902 -198269256 - L1ME LINE L1 -343 5821 5666 464 305 72 15 chr3 19767939 19768359 -198268799 - L1ME LINE L1 -673 5497 5056 914 219 108 8 chr3 19770721 19770981 -198266177 + L1M4 LINE L1 3840 4125 -2021 963 126 0 0 chr3 19770984 19771127 -198266031 - AluSg/x SINE Alu -3 307 165 863 245 93 41 chr3 19771131 19771572 -198265586 + L1M4 LINE L1 4130 4593 -1553 1984 167 11 30 chr3 19771578 19771944 -198265214 + MLT1A1 LTR MaLR 7 365 0 475 284 9 27 chr3 19772382 19772604 -198264554 + L1 LINE L1 3946 4163 -1983 328 319 81 29 chr3 19772820 19773093 -198264065 - L2 LINE L2 -194 3119 2833 305 243 27 0 chr3 19773112 19773186 -198263972 - MIR SINE MIR -108 154 79 349 253 0 11 chr3 19773612 19773703 -198263455 + L1MEd LINE L1 960 1049 -5070 848 252 156 3 chr3 19774520 19774822 -198262336 + MLT1F1 LTR MaLR 103 450 -117 1628 214 74 5 chr3 19775359 19775766 -198261392 + L1MB7 LINE L1 5741 6175 -9 32 67 0 0 chr3 19776176 19776236 -198260922 + AT_rich Low_complexity Low_complexity 1 60 0 183 139 0 0 chr3 19776454 19776490 -198260668 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 401 273 24 8 chr3 19776495 19776621 -198260537 - L1MC4 LINE L1 -1339 6703 6614 399 314 0 19 chr3 19776529 19776634 -198260524 + L1MC4 LINE L1 6614 6716 -1326 * 325 277 87 95 chr3 19776906 19777159 -198259999 - L1 LINE L1 -2814 4034 1655 225 0 0 0 chr3 19777770 19777795 -198259363 + (TA)n Simple_repeat Simple_repeat 2 26 0 1115 203 4 35 chr3 19777795 19778027 -198259131 - AluJo SINE Alu -17 295 71 564 278 137 43 chr3 19781069 19781508 -198255650 - MLT1J LTR MaLR -9 502 23 2310 121 0 0 chr3 19781926 19782239 -198254919 + AluSq SINE Alu 1 313 0 466 295 70 16 chr3 19782409 19782667 -198254491 + L1ME4a LINE L1 5566 5837 -284 402 293 24 69 chr3 19782699 19782831 -198254327 + L2 LINE L2 2334 2451 -863 2332 90 3 7 chr3 19782831 19783150 -198254008 + AluSx SINE Alu 1 312 0 402 293 24 69 chr3 19783150 19783263 -198253895 + L2 LINE L2 2451 2568 -746 218 264 0 11 chr3 19783277 19783368 -198253790 + C-rich Low_complexity Low_complexity 3 92 0 342 0 0 0 chr3 19784682 19784720 -198252438 + (TA)n Simple_repeat Simple_repeat 2 39 0 4317 238 49 53 chr3 19784721 19786186 -198250972 + L1 LINE L1 2488 3947 -2199 2137 126 0 41 chr3 19786186 19786504 -198250654 + AluSx SINE Alu 7 311 -1 4317 238 49 53 chr3 19786504 19786721 -198250437 + L1 LINE L1 3947 4163 -1983 317 278 111 38 chr3 19786856 19787209 -198249949 - L2 LINE L2 -38 3275 2833 305 243 27 0 chr3 19787228 19787302 -198249856 - MIR SINE MIR -108 154 79 416 234 19 9 chr3 19787728 19787835 -198249323 + L1MEd LINE L1 960 1067 -5052 209 387 75 0 chr3 19788150 19788243 -198248915 + L2 LINE L2 3170 3269 -3 194 296 22 74 chr3 19788234 19788369 -198248789 - MIR SINE MIR -128 134 7 * 1980 133 0 0 chr3 19788947 19789218 -198247940 + AluSx SINE Alu 25 295 -17 398 248 7 97 chr3 19789346 19789392 -198247766 + MER5A DNA MER1_type 32 81 -108 2169 125 7 0 chr3 19789392 19789680 -198247478 + AluSq SINE Alu 1 290 -23 398 248 7 97 chr3 19789680 19789778 -198247380 + MER5A DNA MER1_type 81 163 -26 218 340 21 64 chr3 19789802 19789943 -198247215 + MIR SINE MIR 58 192 -70 888 135 0 35 chr3 19790563 19790704 -198246454 - AluJo SINE Alu -176 136 1 286 277 78 21 chr3 19792846 19792987 -198244171 - L1MC4a LINE L1 -1815 5993 5845 306 73 0 0 chr3 19794731 19794772 -198242386 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 408 67 0 0 chr3 19795776 19795836 -198241322 + (TG)n Simple_repeat Simple_repeat 2 61 0 624 210 193 8 chr3 19795854 19796097 -198241061 + MLT1F LTR MaLR 185 472 -70 913 252 33 4 chr3 19796148 19796390 -198240768 + LTR42 LTR ERVL 247 495 0 267 276 0 13 chr3 19796392 19796468 -198240690 + MLT1F LTR MaLR 493 567 0 264 352 48 9 chr3 19796559 19796664 -198240494 + L2 LINE L2 3180 3288 -25 445 298 41 41 chr3 19796700 19796871 -198240287 + MIR SINE MIR 23 193 -69 223 244 11 11 chr3 19797254 19797344 -198239814 + (TG)n Simple_repeat Simple_repeat 1 90 0 411 292 188 48 chr3 19797457 19797834 -198239324 - LTR16C LTR ERVL 0 491 62 248 298 145 0 chr3 19798336 19798467 -198238691 + LTR67 LTR ERVL 408 557 0 281 283 169 5 chr3 19798513 19798697 -198238461 - L1ME4a LINE L1 -52 6069 5856 740 330 78 23 chr3 19798742 19799258 -198237900 + L2 LINE L2 2713 3249 -64 2322 96 78 20 chr3 19799332 19799676 -198237482 + THE1B LTR MaLR 1 364 0 8251 79 15 1 chr3 19799676 19800846 -198236312 + THE1B-int LTR MaLR 1 1187 -393 2224 94 3 7 chr3 19801065 19801374 -198235784 + AluSg SINE Alu 2 309 -1 251 239 60 30 chr3 19801457 19801524 -198235634 - MIR SINE MIR -58 150 82 195 362 13 80 chr3 19802594 19802818 -198234340 - L2 LINE L2 -467 2847 2639 316 364 111 10 chr3 19802821 19803019 -198234139 - MIR SINE MIR -4 258 41 246 349 37 0 chr3 19803051 19803160 -198233998 + MIR SINE MIR 64 176 -86 255 245 60 26 chr3 19803939 19804015 -198233143 + MIR3 SINE MIR 78 159 -49 689 229 49 22 chr3 19804017 19804200 -198232958 + MER5A DNA MER1_type 2 189 0 572 284 162 8 chr3 19804583 19805292 -198231866 + L2 LINE L2 2234 3059 -254 409 233 107 13 chr3 19805429 19805584 -198231574 + MIR SINE MIR 59 245 -17 345 307 30 0 chr3 19805752 19805853 -198231305 + MLT1F1 LTR MaLR 6 109 -458 1258 224 27 62 chr3 19805853 19806224 -198230934 - MLT1A1 LTR MaLR 0 365 8 980 218 214 57 chr3 19806223 19806611 -198230547 + MLT1F1 LTR MaLR 100 541 -1 * 1525 234 71 5 chr3 19807046 19807469 -198229689 + L1MB7 LINE L1 5725 6175 -9 485 313 65 9 chr3 19808422 19808639 -198228519 - L2 LINE L2 -1 3312 3084 516 259 98 15 chr3 19808651 19808856 -198228302 - MLT1A1 LTR MaLR 0 365 144 476 267 46 24 chr3 19808949 19809046 -198228112 + L1MEc LINE L1 1298 1391 -5216 2620 155 38 5 chr3 19809046 19809492 -198227666 + LOR1b LTR ERV1 1 461 0 476 267 46 24 chr3 19809492 19809722 -198227436 + L1MEc LINE L1 1391 1833 -4774 339 250 36 0 chr3 19809732 19809816 -198227342 + L1MEc LINE L1 2673 2759 -3667 4254 113 117 78 chr3 19809816 19811217 -198225941 + pTR5 LTR ERV1 66 2438 0 2261 68 0 0 chr3 19811232 19811544 -198225614 + AluY SINE Alu 1 312 0 552 212 101 0 chr3 19811544 19811733 -198225425 + L1MEc LINE L1 2758 2965 -3461 270 306 234 8 chr3 19811756 19811880 -198225278 - L2 LINE L2 0 3272 3121 519 284 25 31 chr3 19812099 19812261 -198224897 + L2 LINE L2 3153 3313 0 341 330 18 37 chr3 19812419 19812637 -198224521 + MLT1K LTR MaLR 3 216 -372 361 294 20 20 chr3 19812684 19812837 -198224321 + (TGGA)n Simple_repeat Simple_repeat 4 156 0 271 172 16 0 chr3 19812845 19812909 -198224249 + L1MEc LINE L1 2983 3047 -3379 2900 251 67 72 chr3 19812911 19813126 -198224032 + L1MEc LINE L1 3137 3352 -3074 2130 113 0 25 chr3 19813126 19813411 -198223747 + AluY SINE Alu 1 279 -32 354 45 0 0 chr3 19813411 19813455 -198223703 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 2130 113 0 25 chr3 19813455 19813488 -198223670 + AluY SINE Alu 279 311 0 2900 251 67 72 chr3 19813488 19813560 -198223598 + L1MEc LINE L1 3352 3423 -3003 1785 127 58 0 chr3 19813560 19813835 -198223323 + AluSg SINE Alu 16 306 -4 2900 251 67 72 chr3 19813835 19813897 -198223261 + L1MEc LINE L1 3423 3484 -2942 291 122 0 0 chr3 19813897 19813946 -198223212 - MER58 DNA MER1_type 0 2420 2372 2900 251 67 72 chr3 19813946 19815077 -198222081 + L1MEc LINE L1 3484 4658 -1768 213 326 143 0 chr3 19815381 19815479 -198221679 + MIR SINE MIR 41 152 -56 288 331 201 14 chr3 19815485 19815778 -198221380 + L2 LINE L2 2965 3312 -1 207 264 139 0 chr3 19815910 19815982 -198221176 - MIR SINE MIR -75 133 52 303 284 98 0 chr3 19816432 19816534 -198220624 + L2 LINE L2 3145 3256 -16 360 158 20 10 chr3 19817202 19817303 -198219855 + CT-rich Low_complexity Low_complexity 2 103 0 270 250 15 0 chr3 19817322 19817390 -198219768 + (TCCA)n Simple_repeat Simple_repeat 3 71 0 314 291 227 0 chr3 19817400 19817510 -198219648 - L2 LINE L2 -13 3259 3125 579 251 23 46 chr3 19817726 19817901 -198219257 + L2 LINE L2 3141 3311 -2 1714 188 28 6 chr3 19817925 19818277 -198218881 - MLT1A1 LTR MaLR 0 365 6 975 218 9 18 chr3 19818664 19818889 -198218269 - MIR SINE MIR -30 232 10 405 296 206 0 chr3 19818902 19819145 -198218013 + MLT1K LTR MaLR 230 522 -66 360 174 174 9 chr3 19819955 19820070 -198217088 + L2 LINE L2 2921 3054 -259 1520 153 80 22 chr3 19820545 19820819 -198216339 + AluJo SINE Alu 13 302 -10 234 0 0 0 chr3 19821721 19821747 -198215411 + (T)n Simple_repeat Simple_repeat 1 26 0 937 53 0 0 chr3 19821747 19821860 -198215298 - AluSq/x SINE Alu -180 133 21 779 237 49 95 chr3 19822199 19822297 -198214861 + MLT1C LTR MaLR 2 103 -364 2571 48 0 10 chr3 19822297 19822611 -198214547 + AluY SINE Alu 1 311 0 779 237 49 95 chr3 19822611 19822963 -198214195 + MLT1C LTR MaLR 103 431 -36 1296 206 31 34 chr3 19824119 19824474 -198212684 - MLT1B LTR MaLR -29 361 8 237 293 78 37 chr3 19824496 19824687 -198212471 + LTR33 LTR ERVL 161 359 -162 1670 241 40 2 chr3 19825039 19825735 -198211423 + L1MD2 LINE L1 4929 5648 -711 863 216 0 5 chr3 19825737 19825931 -198211227 + L1MD2 LINE L1 5769 5961 -398 1381 195 66 18 chr3 19825937 19826270 -198210888 + L1MD2 LINE L1 6010 6358 -1 760 254 117 0 chr3 19826346 19826602 -198210556 + MLT1G3 LTR MaLR 143 428 -102 480 111 0 0 chr3 19826962 19827034 -198210124 + (TG)n Simple_repeat Simple_repeat 1 72 0 187 306 69 0 chr3 19827979 19828051 -198209107 - MIR SINE MIR -99 163 87 213 264 18 117 chr3 19828835 19828998 -198208160 + MIR SINE MIR 3 149 -113 585 98 33 54 chr3 19830116 19830300 -198206858 + (CA)n Simple_repeat Simple_repeat 1 180 0 515 148 40 17 chr3 19830347 19830523 -198206635 + (CA)n Simple_repeat Simple_repeat 1 180 0 336 298 128 21 chr3 19831022 19831163 -198205995 + MIR SINE MIR 66 221 -41 270 352 61 37 chr3 19831290 19831490 -198205668 - MIR SINE MIR -41 221 14 1759 153 35 0 chr3 19831573 19831740 -198205418 - AluJo SINE Alu -12 300 117 207 0 0 0 chr3 19831740 19831763 -198205395 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1759 153 35 0 chr3 19831763 19831883 -198205275 - AluJo SINE Alu -195 117 3 3852 175 51 3 chr3 19832350 19833053 -198204105 + L1MB3 LINE L1 5446 6182 -1 291 343 20 0 chr3 19833127 19833226 -198203932 - MIR SINE MIR -32 230 130 428 263 66 20 chr3 19833229 19833381 -198203777 + LTR33 LTR ERVL 49 207 -314 455 153 10 0 chr3 19833403 19833501 -198203657 + (CA)n Simple_repeat Simple_repeat 2 100 0 335 252 46 23 chr3 19833513 19833644 -198203514 + LTR33 LTR ERVL 338 471 -50 180 237 0 0 chr3 19834075 19834113 -198203045 - L2 LINE L2 -17 3255 3218 2304 84 16 0 chr3 19834953 19835337 -198201821 - AluSq SINE Alu 0 389 1 293 250 7 0 chr3 19835695 19835835 -198201323 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 694 168 10 0 chr3 19835856 19836074 -198201084 + (TCCA)n Simple_repeat Simple_repeat 1 220 0 598 202 11 0 chr3 19836086 19836264 -198200894 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 669 203 0 0 chr3 19836276 19836453 -198200705 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 510 184 19 0 chr3 19836454 19836557 -198200601 + Tigger7 DNA MER2_type 2476 2580 -7 700 221 0 0 chr3 19836568 19836731 -198200427 + L1ME LINE L1 5336 5498 -664 255 314 23 0 chr3 19836754 19836840 -198200318 + L1ME3 LINE L1 6073 6160 -2 216 302 225 22 chr3 19837368 19837782 -198199376 + L2 LINE L2 2268 2765 -549 388 325 155 20 chr3 19837838 19838232 -198198926 + L2 LINE L2 2867 3313 0 327 244 89 22 chr3 19840216 19840306 -198196852 + MIR SINE MIR 34 129 -79 184 387 32 11 chr3 19840358 19840451 -198196707 + MIR SINE MIR 2 96 -166 385 253 61 0 chr3 19841270 19841369 -198195789 + L2 LINE L2 3209 3313 0 188 219 0 24 chr3 19841371 19841412 -198195746 - L2 LINE L2 -94 3219 3180 274 344 49 0 chr3 19841435 19841557 -198195601 - L3 LINE CR1 -86 1491 1364 213 337 74 16 chr3 19841916 19842106 -198195052 + L2 LINE L2 2868 3068 -204 531 215 40 40 chr3 19842251 19842400 -198194758 + MIR SINE MIR 31 179 -83 3085 206 45 37 chr3 19842407 19843779 -198193379 - L1MB8 LINE L1 -169 6009 4629 180 404 10 0 chr3 19843785 19843884 -198193274 - L3 LINE CR1 -730 847 748 347 242 297 12 chr3 19846653 19846996 -198190162 - LTR33 LTR ERVL -66 455 15 859 269 80 12 chr3 19847394 19847732 -198189426 - L1MB7 LINE L1 -64 6120 5760 403 228 98 53 chr3 19847854 19848100 -198189058 + MER113 DNA MER1_type? 6 262 -259 196 260 0 20 chr3 19848295 19848345 -198188813 + MIR3 SINE MIR 160 208 0 250 273 78 0 chr3 19848535 19848612 -198188546 + L2 LINE L2 3188 3270 -2 398 306 148 29 chr3 19849157 19849435 -198187723 + L2 LINE L2 2456 2766 -548 265 179 170 18 chr3 19850391 19850503 -198186655 - MER102a DNA MER1_type -6 324 196 408 174 35 0 chr3 19852247 19852333 -198184825 - L1MB4 LINE L1 -1 6179 6091 2406 168 46 17 chr3 19852333 19852867 -198184291 - L1MB3 LINE L1 -133 6050 5498 186 335 125 13 chr3 19853501 19853653 -198183505 - L3 LINE CR1 -1 1576 1408 433 361 66 0 chr3 19854171 19854398 -198182760 + MIR SINE MIR 2 243 -19 217 336 96 28 chr3 19855785 19856035 -198181123 - L2 LINE L2 -2 3311 3045 2206 80 10 3 chr3 19856108 19856407 -198180751 - AluSx SINE Alu -11 301 1 722 241 23 11 chr3 19856432 19856606 -198180552 + MIR SINE MIR 1 176 -86 460 228 30 0 chr3 19856604 19856705 -198180453 - L2 LINE L2 -1 3312 3209 * 778 124 0 9 chr3 19856720 19856833 -198180325 + FLAM_C SINE Alu 24 135 -8 648 124 33 50 chr3 19857219 19857321 -198179837 + FRAM SINE Alu 57 158 -154 2379 87 3 0 chr3 19857321 19857631 -198179527 + AluSx SINE Alu 1 311 -1 648 124 33 50 chr3 19857631 19857649 -198179509 + FRAM SINE Alu 158 175 -1 434 274 42 10 chr3 19857651 19857851 -198179307 - L2 LINE L2 -86 3227 2712 622 307 117 4 chr3 19858848 19859277 -198177881 + L2 LINE L2 2776 3272 0 297 304 76 35 chr3 19859885 19860056 -198177102 + L2 LINE L2 2889 3066 -247 * 721 237 24 26 chr3 19860028 19860212 -198176946 + MIR SINE MIR 51 235 -27 8201 115 35 11 chr3 19860224 19861490 -198175668 - HSMAR2 DNA Mariner -1 1301 5 205 277 0 0 chr3 19861490 19861537 -198175621 + (TG)n Simple_repeat Simple_repeat 1 47 0 1057 200 177 16 chr3 19861541 19861851 -198175307 - MLT1A2 LTR MaLR 0 374 15 786 313 47 33 chr3 19861989 19862417 -198174741 + MER20B DNA MER1_type 311 744 -39 1765 201 60 0 chr3 19862934 19863385 -198173773 + L1MB3 LINE L1 5706 6183 0 322 344 33 13 chr3 19863385 19863536 -198173622 - MER5A DNA MER1_type -28 161 8 430 299 113 25 chr3 19863997 19864201 -198172957 + MIR SINE MIR 20 241 -21 416 265 0 24 chr3 19864416 19864586 -198172572 + (TG)n Simple_repeat Simple_repeat 1 166 0 181 247 137 0 chr3 19867885 19867958 -198169200 + MIR SINE MIR 63 145 -63 395 218 126 23 chr3 19868533 19868707 -198168451 + L2 LINE L2 2873 3064 -249 1098 253 29 9 chr3 19869914 19870300 -198166858 + L1MB3 LINE L1 5810 6184 0 1649 161 53 27 chr3 19870315 19870614 -198166544 + AluJo SINE Alu 1 307 -5 237 32 0 0 chr3 19871347 19871378 -198165780 - MER103 DNA DNA -83 83 53 419 269 31 0 chr3 19872098 19872228 -198164930 + L1MB3 LINE L1 6041 6174 -9 186 305 17 0 chr3 19872656 19872715 -198164443 - MIR SINE MIR -87 121 62 333 254 82 33 chr3 19872819 19872941 -198164217 + L1ME3A LINE L1 6033 6160 -10 273 269 51 0 chr3 19873061 19873139 -198164019 + GA-rich Low_complexity Low_complexity 4 85 0 274 300 0 73 chr3 19874213 19874323 -198162835 - L2 LINE L2 -1 3312 3211 845 150 0 0 chr3 19874418 19874545 -198162613 - AluSg/x SINE Alu -19 293 167 1345 240 77 52 chr3 19875238 19875703 -198161455 - MLT1H LTR MaLR -16 533 52 2031 130 3 3 chr3 19875703 19876004 -198161154 + AluSx SINE Alu 1 301 -11 1345 240 77 52 chr3 19876004 19876058 -198161100 - MLT1H LTR MaLR -497 52 1 1630 249 23 0 chr3 19876325 19876758 -198160400 + L1MB3 LINE L1 5739 6181 -2 286 370 66 11 chr3 19877770 19877951 -198159207 - L3 LINE CR1 -730 847 657 197 351 26 0 chr3 19878845 19878922 -198158236 + MIR SINE MIR 148 226 -36 446 177 0 0 chr3 19878961 19879040 -198158118 - MIR SINE MIR -105 157 79 249 125 0 0 chr3 19879040 19879080 -198158078 - MIR SINE MIR -144 118 79 278 125 0 0 chr3 19879080 19879120 -198158038 - MIR SINE MIR -144 118 79 454 194 48 0 chr3 19879120 19879223 -198157935 - MIR SINE MIR -144 118 11 2443 68 0 3 chr3 19879381 19879689 -198157469 - AluY SINE Alu -4 307 1 456 194 93 37 chr3 19879821 19879929 -198157229 + MIR SINE MIR 36 149 -59 287 321 21 1 chr3 19880085 19880190 -198156968 + MIR SINE MIR 41 147 -61 1775 105 46 56 chr3 19880633 19880819 -198156339 - AluSx SINE Alu -9 303 120 330 45 0 0 chr3 19880819 19880863 -198156295 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 1775 105 46 56 chr3 19880863 19880982 -198156176 - AluSx SINE Alu -192 120 1 1002 286 135 12 chr3 19880983 19881680 -198155478 + L2 LINE L2 2519 3313 0 4217 174 11 28 chr3 19882237 19882936 -198154222 - L1MB3 LINE L1 -2 6181 5495 2381 84 0 0 chr3 19882936 19883247 -198153911 - AluY SINE Alu 0 311 1 4217 174 11 28 chr3 19883247 19883335 -198153823 - L1MB3 LINE L1 -688 5495 5407 726 235 5 51 chr3 19883356 19883552 -198153606 - MIR SINE MIR -46 216 30 229 283 91 0 chr3 19885025 19885124 -198152034 - MIR SINE MIR -114 148 41 1006 155 0 0 chr3 19885833 19885988 -198151170 - FRAM SINE Alu -13 163 9 636 234 119 35 chr3 19886083 19886284 -198150874 + MER20 DNA MER1_type 1 218 -1 266 102 44 257 chr3 19886371 19886577 -198150581 + L1MB4 LINE L1 6019 6180 0 198 302 47 35 chr3 19886681 19886767 -198150391 - MIR SINE MIR -87 175 89 547 270 37 11 chr3 19887154 19887342 -198149816 + MIR SINE MIR 45 237 -25 2109 182 266 16 chr3 19887937 19888569 -198148589 + L1MC1 LINE L1 5544 6333 0 1762 166 13 19 chr3 19888615 19888929 -198148229 + AluJo SINE Alu 1 312 0 346 343 120 0 chr3 19889106 19889389 -198147769 + L2 LINE L2 2492 2808 -506 266 265 20 41 chr3 19890317 19890415 -198146743 + GA-rich Low_complexity Low_complexity 5 100 0 197 261 54 33 chr3 19890871 19890963 -198146195 - L2 LINE L2 -27 3245 3152 568 266 85 25 chr3 19891388 19891748 -198145410 + LTR16A LTR ERVL 59 457 0 241 271 57 0 chr3 19892633 19892703 -198144455 + MIR SINE MIR 100 173 -89 2265 183 55 36 chr3 19892743 19893208 -198143950 + L1MB3 LINE L1 5610 6090 -93 1546 165 4 8 chr3 19893208 19893491 -198143667 + AluSx SINE Alu 29 310 0 2265 183 55 36 chr3 19893491 19893586 -198143572 + L1MB3 LINE L1 6090 6182 -1 1953 90 19 4 chr3 19893668 19893935 -198143223 - AluSg SINE Alu -19 291 21 225 274 41 0 chr3 19894064 19894137 -198143021 + MIR SINE MIR 77 152 -110 554 198 6 0 chr3 19895016 19895193 -198141965 + CT-rich Low_complexity Low_complexity 1 178 0 996 307 30 30 chr3 19895753 19896186 -198140972 - MLT1J LTR MaLR -78 433 1 220 204 0 0 chr3 19896326 19896370 -198140788 - MIR SINE MIR -96 166 123 2132 162 16 14 chr3 19897220 19897584 -198139574 + MLT1A1 LTR MaLR 1 365 0 2519 61 0 0 chr3 19897822 19898133 -198139025 - AluY SINE Alu 0 311 1 498 288 8 0 chr3 19898429 19898554 -198138604 + MIR SINE MIR 20 145 -117 268 276 29 48 chr3 19898856 19898961 -198138197 - Charlie7 DNA MER1_type -2505 107 5 196 247 21 65 chr3 19899210 19899303 -198137855 - L2 LINE L2 -243 3029 2941 1235 241 33 5 chr3 19900008 19900509 -198136649 + MLT1H1 LTR MaLR 1 547 -8 199 311 107 0 chr3 19900548 19900651 -198136507 - L2 LINE L2 0 3313 3200 2179 210 33 42 chr3 19900862 19901312 -198135846 + L1M4c LINE L1 2214 2667 -3715 2360 88 0 0 chr3 19901312 19901618 -198135540 + AluY SINE Alu 1 306 -5 2179 210 33 42 chr3 19901618 19901728 -198135430 + L1M4c LINE L1 2667 2777 -3605 1748 190 3 0 chr3 19901728 19902039 -198135119 + AluJo SINE Alu 1 312 0 2179 210 33 42 chr3 19902039 19902335 -198134823 + L1M4c LINE L1 2777 3056 -3326 268 288 0 25 chr3 19902427 19902507 -198134651 + MIR SINE MIR 116 193 -69 562 260 34 64 chr3 19903250 19903454 -198133704 - MIR SINE MIR -57 205 8 576 252 77 42 chr3 19903863 19904173 -198132985 + L2 LINE L2 2615 2935 -379 319 279 0 47 chr3 19904165 19904294 -198132864 - MIR SINE MIR -81 181 59 * 598 308 76 13 chr3 19905198 19905435 -198131723 + MIR SINE MIR 2 253 -9 280 218 188 0 chr3 19905751 19905852 -198131306 + L2 LINE L2 2939 3058 -214 2565 61 0 0 chr3 19906295 19906605 -198130553 - AluY SINE Alu -1 310 1 195 320 32 40 chr3 19906712 19906837 -198130321 - MIR SINE MIR -116 146 23 252 59 0 0 chr3 19907324 19907358 -198129800 + (A)n Simple_repeat Simple_repeat 1 34 0 2155 96 0 3 chr3 19908750 19909032 -198128126 + AluSx SINE Alu 1 281 -31 575 302 23 18 chr3 19909040 19909288 -198127870 + MIR SINE MIR 3 250 -12 252 272 86 0 chr3 19909414 19909495 -198127663 - L2 LINE L2 -1 3312 3225 366 276 89 23 chr3 19910212 19910444 -198126714 - MIR SINE MIR 0 262 13 346 264 203 14 chr3 19910842 19910990 -198126168 + MER5A DNA MER1_type 9 184 -5 41 48 0 0 chr3 19912963 19913025 -198124133 + GC_rich Low_complexity Low_complexity 1 62 0 353 300 0 32 chr3 19913088 19913291 -198123867 + C-rich Low_complexity Low_complexity 1 196 0 1390 86 11 0 chr3 19913417 19913603 -198123555 + AluSg/x SINE Alu 116 303 -9 1473 177 95 28 chr3 19913622 19914012 -198123146 - MSTA LTR MaLR 0 428 13 290 340 28 7 chr3 19914981 19915125 -198122033 + L1ME4a LINE L1 5514 5660 -461 324 376 47 27 chr3 19915212 19915361 -198121797 + L1ME4a LINE L1 5771 5922 -199 567 260 130 10 chr3 19915913 19916105 -198121053 + MIR SINE MIR 34 248 -14 570 260 215 10 chr3 19916866 19917066 -198120092 + MIR SINE MIR 2 242 -20 290 236 12 24 chr3 19917337 19917457 -198119701 - MLT1J2 LTR MaLR -77 434 259 400 252 10 0 chr3 19917700 19917803 -198119355 - MLT1J LTR MaLR -335 176 73 408 302 33 33 chr3 19918396 19918578 -198118580 + Charlie8 DNA MER1_type 1 182 -2235 205 245 306 0 chr3 19919271 19919369 -198117789 - L2 LINE L2 0 3272 3145 913 245 5 0 chr3 19919389 19919577 -198117581 + MIR SINE MIR 14 202 -60 361 211 167 0 chr3 19919617 19919707 -198117451 - L2 LINE L2 -6 3266 3162 326 309 134 7 chr3 19920469 19920618 -198116540 + MIR SINE MIR 35 202 -60 314 289 10 21 chr3 19920622 19920719 -198116439 - L2 LINE L2 -39 3274 3179 181 319 69 26 chr3 19920929 19921045 -198116113 - MIR SINE MIR -70 192 72 1649 157 4 18 chr3 19921183 19921477 -198115681 - AluJo SINE Alu 0 304 15 424 285 95 14 chr3 19921628 19921849 -198115309 + L2 LINE L2 2158 2396 -918 518 120 0 0 chr3 19922053 19922128 -198115030 - AluY SINE Alu -15 294 220 1298 57 6 0 chr3 19922129 19922286 -198114872 - AluY SINE Alu -153 158 1 388 316 111 22 chr3 19922287 19922756 -198114402 + L2 LINE L2 2688 3313 0 316 254 45 27 chr3 19923084 19923194 -198113964 - L2 LINE L2 -251 3021 2910 531 243 176 27 chr3 19923345 19923646 -198113512 + L2 LINE L2 2624 2969 -345 220 290 250 0 chr3 19924389 19924513 -198112645 + L2 LINE L2 3010 3164 -149 1219 211 37 9 chr3 19924516 19924839 -198112319 - L1MB7 LINE L1 -9 6175 5844 400 375 47 32 chr3 19924889 19925343 -198111815 + L2 LINE L2 2817 3312 -1 491 307 78 43 chr3 19926149 19926326 -198110832 + MIR SINE MIR 20 208 -54 2596 49 0 0 chr3 19926326 19926633 -198110525 + AluY SINE Alu 1 307 -4 491 307 78 43 chr3 19926633 19926686 -198110472 + MIR SINE MIR 208 258 -4 272 327 59 39 chr3 19926808 19926961 -198110197 + L2 LINE L2 2896 3051 -262 231 214 0 0 chr3 19927086 19927128 -198110030 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 328 306 58 8 chr3 19927188 19927309 -198109849 + L2 LINE L2 3185 3311 -2 545 220 44 38 chr3 19928073 19928232 -198108926 - MER5A DNA MER1_type -18 171 12 342 296 143 42 chr3 19928726 19928915 -198108243 + MIR SINE MIR 22 229 -33 995 258 64 50 chr3 19929352 19929709 -198107449 - MLT1K LTR MaLR -144 444 83 204 304 157 31 chr3 19930012 19930203 -198106955 + L3 LINE CR1 1347 1561 -16 426 285 70 0 chr3 19930515 19930715 -198106443 - L2 LINE L2 -288 3025 2812 184 292 0 0 chr3 19930850 19930898 -198106260 + L2 LINE L2 2999 3046 -267 569 336 60 7 chr3 19932082 19932380 -198104778 - L2 LINE L2 -2 3311 2998 218 303 15 0 chr3 19932724 19932790 -198104368 + L2 LINE L2 3201 3267 -5 299 326 90 14 chr3 19933072 19933216 -198103942 - L2 LINE L2 0 3313 3159 1743 186 12 75 chr3 19933217 19933242 -198103916 - L1MB7 LINE L1 -18 6166 6141 2388 65 0 10 chr3 19933242 19933552 -198103606 - AluY SINE Alu -4 307 1 1743 186 12 75 chr3 19933552 19933894 -198103264 - L1MB7 LINE L1 -43 6141 5846 1733 148 14 31 chr3 19933894 19934184 -198102974 - AluJb SINE Alu -23 289 5 1743 186 12 75 chr3 19934184 19934325 -198102833 - L1MB7 LINE L1 -338 5846 5698 187 320 51 0 chr3 19934557 19934635 -198102523 - L2 LINE L2 -1384 1930 1849 534 271 118 50 chr3 19934658 19935041 -198102117 - L2 LINE L2 -351 2963 2555 1564 209 88 29 chr3 19935445 19935819 -198101339 + MSTD LTR MaLR 1 396 0 311 243 103 0 chr3 19935819 19935926 -198101232 - MER113 DNA MER1_type? -337 184 67 291 164 73 0 chr3 19936009 19936064 -198101094 - MIR SINE MIR -55 153 95 665 315 156 8 chr3 19936478 19936862 -198100296 - L2 LINE L2 0 3313 2873 291 293 80 17 chr3 19937247 19937395 -198099763 - MIR SINE MIR -52 156 3 257 309 200 36 chr3 19938010 19938230 -198098928 - L3 LINE CR1 -10 1567 1312 395 288 25 0 chr3 19938233 19938351 -198098807 + MIR SINE MIR 62 182 -80 320 388 158 8 chr3 19938400 19938766 -198098392 - L3 LINE CR1 -226 1351 931 583 241 62 7 chr3 19938932 19939077 -198098081 + L2 LINE L2 3119 3271 -1 303 348 45 0 chr3 19939602 19939714 -198097444 - L2 LINE L2 -4 3309 3193 270 306 45 36 chr3 19939712 19939823 -198097335 - MIR SINE MIR -29 233 122 * 505 228 41 28 chr3 19939989 19940134 -198097024 - MIR3 SINE MIR -59 149 3 533 338 130 20 chr3 19940295 19940851 -198096307 - L2 LINE L2 0 3272 2637 2012 92 10 39 chr3 19941075 19941381 -198095777 + AluY SINE Alu 7 303 -8 2368 55 0 39 chr3 19941412 19941723 -198095435 + AluY SINE Alu 1 299 -12 362 303 62 62 chr3 19942036 19942244 -198094914 + MIR SINE MIR 55 262 0 254 323 160 10 chr3 19942382 19942670 -198094488 - MER102b DNA MER1_type 0 341 11 804 226 43 0 chr3 19942689 19942853 -198094305 - AluJb SINE Alu -2 310 140 242 331 42 0 chr3 19942894 19943036 -198094122 - MER117 DNA MER1_type -6 191 44 2257 96 7 0 chr3 19943227 19943529 -198093629 - AluY SINE Alu -7 304 1 1194 202 41 8 chr3 19943531 19943979 -198093179 - L1M4 LINE L1 -3705 2677 2214 199 311 107 0 chr3 19944190 19944293 -198092865 + L2 LINE L2 3200 3313 0 1235 241 33 5 chr3 19944332 19944833 -198092325 - MLT1H1 LTR MaLR -8 547 1 196 247 21 65 chr3 19945538 19945631 -198091527 + L2 LINE L2 2941 3029 -243 296 284 28 46 chr3 19945876 19945985 -198091173 + Charlie7 DNA MER1_type 1 107 -2505 498 288 8 0 chr3 19946287 19946412 -198090746 - MIR SINE MIR -117 145 20 2518 58 0 0 chr3 19946708 19947019 -198090139 + AluY SINE Alu 1 311 0 2127 159 16 14 chr3 19947257 19947621 -198089537 - MLT1A1 LTR MaLR 0 365 1 215 204 0 0 chr3 19948469 19948513 -198088645 + MIR SINE MIR 123 166 -96 1110 316 28 28 chr3 19948653 19949086 -198088072 + MLT1J LTR MaLR 1 433 -78 533 203 6 0 chr3 19949645 19949822 -198087336 + GA-rich Low_complexity Low_complexity 1 178 0 1899 87 23 4 chr3 19950919 19951184 -198085974 + AluSg SINE Alu 21 290 -20 446 269 31 0 chr3 19951463 19951593 -198085565 - L1MB3 LINE L1 -9 6174 6041 1758 76 0 13 chr3 19951771 19952008 -198085150 + AluY SINE Alu 74 307 -4 1195 230 20 69 chr3 19952008 19952119 -198085039 + L1M4 LINE L1 2433 2548 -3598 1730 186 3 0 chr3 19952119 19952430 -198084728 + AluJo SINE Alu 1 312 0 1195 230 20 69 chr3 19952430 19952726 -198084432 + L1M4 LINE L1 2548 2820 -3326 262 288 0 25 chr3 19952818 19952898 -198084260 + MIR SINE MIR 116 193 -69 524 260 34 64 chr3 19953641 19953845 -198083313 - MIR SINE MIR -57 205 8 467 261 77 42 chr3 19954254 19954564 -198082594 + L2 LINE L2 2615 2935 -379 298 279 0 47 chr3 19954556 19954685 -198082473 - MIR SINE MIR -81 181 59 * 555 259 122 15 chr3 19955589 19955794 -198081364 + MIR SINE MIR 2 228 -34 278 206 196 0 chr3 19956142 19956239 -198080919 + L2 LINE L2 2939 3054 -218 2137 154 0 3 chr3 19956683 19956995 -198080163 - AluSx SINE Alu -1 311 1 270 0 0 0 chr3 19958396 19958426 -198078732 + (T)n Simple_repeat Simple_repeat 1 30 0 181 291 27 55 chr3 19958929 19959039 -198078119 + MIR SINE MIR 40 146 -116 1613 61 0 0 chr3 19959146 19959342 -198077816 + AluY SINE Alu 1 196 -115 2084 103 7 3 chr3 19959800 19960100 -198077058 - AluSx SINE Alu -11 301 1 2313 58 0 39 chr3 19960189 19960498 -198076660 + AluY SINE Alu 3 299 -12 343 224 122 0 chr3 19960810 19960917 -198076241 + MIR SINE MIR 55 174 -88 325 323 160 10 chr3 19961156 19961444 -198075714 - MER102b DNA MER1_type 0 341 11 787 226 43 0 chr3 19961463 19961627 -198075531 - AluJb SINE Alu -2 310 140 278 331 42 0 chr3 19961668 19961810 -198075348 - MER117 DNA MER1_type -6 191 44 186 43 0 0 chr3 19962002 19962025 -198075133 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2019 108 0 4 chr3 19962025 19962304 -198074854 - AluSg SINE Alu -32 278 1 2045 87 56 0 chr3 19962510 19962796 -198074362 - AluY SINE Alu -8 303 2 526 287 118 4 chr3 19963569 19963775 -198073383 + Charlie2a DNA MER1_type 734 976 -1886 2084 108 7 0 chr3 19963775 19964070 -198073088 - AluSq SINE Alu -16 297 1 526 287 118 4 chr3 19964070 19964117 -198073041 + Charlie2a DNA MER1_type 976 1016 -1846 322 206 98 0 chr3 19965185 19965277 -198071881 + MER5A DNA MER1_type 9 109 -80 689 301 62 55 chr3 19965487 19965889 -198071269 - L2 LINE L2 -2 3270 2866 372 358 12 0 chr3 19965889 19966051 -198071107 - L1ME LINE L1 -329 5792 5629 227 184 0 20 chr3 19966553 19966602 -198070556 + MER53 DNA DNA 101 148 -41 672 265 0 6 chr3 19966787 19966953 -198070205 + MIR SINE MIR 33 197 -65 1949 86 32 4 chr3 19966969 19967248 -198069910 + AluSc SINE Alu 9 295 -14 2175 109 0 3 chr3 19967248 19967551 -198069607 + AluSp SINE Alu 1 302 -11 330 281 22 22 chr3 19967564 19967653 -198069505 - L1MC4 LINE L1 -1339 6703 6615 2330 83 0 0 chr3 19967653 19967953 -198069205 - AluY SINE Alu -11 300 1 610 317 117 0 chr3 19968035 19968335 -198068823 - L2 LINE L2 -97 3216 2882 654 172 94 56 chr3 19968335 19968515 -198068643 - MER53 DNA DNA -2 187 1 326 264 18 45 chr3 19969038 19969148 -198068010 + MIR SINE MIR 41 147 -61 289 336 29 0 chr3 19969636 19969740 -198067418 + MIR3 SINE MIR 88 194 -14 1516 199 2 114 chr3 19969822 19969994 -198067164 + MLT1A1 LTR MaLR 1 105 -260 1604 155 36 4 chr3 19969994 19970299 -198066859 + AluJb SINE Alu 3 316 0 1516 199 2 114 chr3 19970299 19970534 -198066624 + MLT1A1 LTR MaLR 105 365 0 216 272 37 62 chr3 19970823 19970904 -198066254 - MIR SINE MIR -81 181 103 471 228 62 168 chr3 19970949 19971159 -198065999 - MER113 DNA MER1_type? -52 469 238 2154 97 0 0 chr3 19971159 19971437 -198065721 - AluSx SINE Alu -32 280 3 471 228 62 168 chr3 19971437 19971636 -198065522 - MER113 DNA MER1_type? -283 238 124 678 203 0 36 chr3 19971636 19971774 -198065384 + FLAM_A SINE Alu 1 133 0 471 228 62 168 chr3 19971774 19971880 -198065278 - MER113 DNA MER1_type? -397 124 8 334 294 1 0 chr3 19971891 19971976 -198065182 + MIR SINE MIR 64 148 -69 2369 84 0 3 chr3 19972036 19972347 -198064811 - AluY SINE Alu -1 310 1 262 271 12 0 chr3 19972873 19972958 -198064200 - L1MDa LINE L1 -3951 2589 2504 326 265 127 48 chr3 19972959 19973148 -198064010 - L1MDa LINE L1 -4056 2484 2281 258 345 55 12 chr3 19973226 19973391 -198063767 - MIR SINE MIR -22 240 69 229 333 93 20 chr3 19973718 19973868 -198063290 - L2 LINE L2 0 3272 3112 2380 71 0 3 chr3 19973927 19974236 -198062922 + AluSc SINE Alu 1 308 -1 475 297 53 42 chr3 19974612 19974806 -198062352 - L1MC/D LINE L1 -456 5665 5478 2044 110 24 7 chr3 19974821 19975144 -198062014 + AluSp SINE Alu 1 313 0 379 322 30 35 chr3 19975149 19975351 -198061807 - L2 LINE L2 -166 3106 2906 273 369 33 0 chr3 19975522 19975644 -198061514 + MIR SINE MIR 18 143 -65 2520 196 111 6 chr3 19975900 19976405 -198060753 + LTR64 LTR ERVK 1 558 0 617 323 25 39 chr3 19976788 19977067 -198060091 + MER31-int LTR ERV1 349 623 -6135 1627 98 125 68 chr3 19977118 19977413 -198059745 - AluSx SINE Alu 0 312 1 1495 184 47 0 chr3 19977424 19977580 -198059578 - AluJb SINE Alu -21 291 115 198 0 0 0 chr3 19977580 19977602 -198059556 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1495 184 47 0 chr3 19977602 19977723 -198059435 - AluJb SINE Alu -197 115 1 472 241 225 8 chr3 19977953 19978206 -198058952 + MER31-int LTR ERV1 2820 3127 -1809 * 645 227 128 50 chr3 19978193 19978450 -198058708 + MER31-int LTR ERV1 2963 3251 -1685 1759 171 0 10 chr3 19978450 19978748 -198058410 + AluJb SINE Alu 5 299 -13 645 227 128 50 chr3 19978748 19978811 -198058347 + MER31-int LTR ERV1 3251 3308 -1628 2295 175 157 22 chr3 19979237 19979684 -198057474 + LTR64 LTR ERVK 1 521 -37 2203 88 3 0 chr3 19979684 19979978 -198057180 + AluSp SINE Alu 1 295 -18 2295 175 157 22 chr3 19979978 19980022 -198057136 + LTR64 LTR ERVK 521 558 0 271 256 0 49 chr3 19980308 19980390 -198056768 + MLT1H LTR MaLR 127 204 -345 225 220 17 17 chr3 19980590 19980649 -198056509 - Charlie8 DNA MER1_type -2277 140 82 303 172 0 0 chr3 19981032 19981090 -198056068 - L1ME LINE L1 -679 5485 5428 * 1282 198 45 44 chr3 19981089 19981589 -198055569 - L1MB8 LINE L1 0 6178 5680 2173 84 0 7 chr3 19981589 19981902 -198055256 - AluSg SINE Alu 0 311 1 1282 198 45 44 chr3 19981902 19982314 -198054844 - L1MB8 LINE L1 -498 5680 5092 2379 210 36 16 chr3 19982319 19983050 -198054108 - L1ME LINE L1 -738 5436 4693 261 257 57 38 chr3 19983098 19983203 -198053955 - MER20B DNA MER1_type -656 127 21 997 274 118 15 chr3 19983225 19983630 -198053528 + HAL1 LINE L1 1475 1921 -586 201 74 0 0 chr3 19983982 19984009 -198053149 + (GGGAA)n Simple_repeat Simple_repeat 1 27 0 1093 225 61 13 chr3 19984027 19984338 -198052820 - LTR16A LTR ERVL -15 435 110 254 280 92 19 chr3 19986273 19986480 -198050678 + L1M4 LINE L1 2945 3166 -2980 955 81 0 0 chr3 19986754 19986878 -198050280 - FLAM_C SINE Alu -19 124 1 2112 83 10 38 chr3 19986908 19987222 -198049936 - AluY SINE Alu -6 305 1 1651 117 103 34 chr3 19987279 19987570 -198049588 - AluSx SINE Alu 0 312 2 572 239 101 0 chr3 19987702 19987890 -198049268 + MIR SINE MIR 22 228 -34 251 241 69 0 chr3 19988957 19989044 -198048114 - MLT1I LTR MaLR -248 161 69 213 245 206 29 chr3 19989176 19989278 -198047880 - MIR SINE MIR -67 141 22 2373 59 0 0 chr3 19989377 19989667 -198047491 + AluY SINE Alu 1 290 -21 235 0 28 28 chr3 19989670 19989706 -198047452 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 205 255 160 43 chr3 19992460 19992554 -198044604 + MER91C DNA MER1_type 2 106 -34 2260 93 0 0 chr3 19994283 19994583 -198042575 + AluY SINE Alu 1 300 -11 1964 86 19 0 chr3 19994583 19994838 -198042320 + AluY SINE Alu 36 296 -15 187 207 69 103 chr3 19995070 19995157 -198042001 - MIR3 SINE MIR -34 174 91 22 56 0 0 chr3 19995379 19995415 -198041743 + AT_rich Low_complexity Low_complexity 1 36 0 254 283 33 79 chr3 19995830 19995982 -198041176 + L2 LINE L2 2970 3114 -158 237 276 147 26 chr3 19997456 19997572 -198039586 - MIR SINE MIR -111 151 22 559 326 121 0 chr3 19998765 19998980 -198038178 - MIR SINE MIR -6 256 16 180 352 106 14 chr3 19999469 19999611 -198037547 - MIR3 SINE MIR -24 184 30 562 243 79 53 chr3 20000279 20000583 -198036575 - MER113 DNA MER1_type? -209 312 1 689 285 29 5 chr3 20000803 20001010 -198036148 - MER58A DNA MER1_type -1 223 12 257 333 106 0 chr3 20001766 20001898 -198035260 + MIR SINE MIR 113 258 -4 239 294 144 20 chr3 20002179 20002325 -198034833 - MIR3 SINE MIR -25 183 20 340 214 48 24 chr3 20002535 20002619 -198034539 + MER74A LTR ERVL 411 496 -62 237 250 0 0 chr3 20003445 20003493 -198033665 + L2 LINE L2 3216 3263 -9 269 282 39 13 chr3 20003819 20003897 -198033261 + MIR SINE MIR 66 145 -63 313 271 225 0 chr3 20004063 20004214 -198032944 + MIR3 SINE MIR 3 187 -21 281 277 188 58 chr3 20005322 20005614 -198031544 + L2 LINE L2 2938 3267 -5 342 200 74 11 chr3 20005819 20005914 -198031244 - MER5A DNA MER1_type -80 109 9 279 162 7 24 chr3 20006511 20006660 -198030498 + AluJo SINE Alu 82 283 -19 1570 148 0 29 chr3 20007878 20008188 -198028970 + AluY SINE Alu 1 301 -10 2220 242 52 37 chr3 20008192 20008942 -198028216 + L1ME2 LINE L1 2971 3708 -2456 2267 69 0 41 chr3 20008942 20009259 -198027899 - AluSg SINE Alu -6 304 1 2220 242 52 37 chr3 20009259 20010389 -198026769 + L1ME2 LINE L1 3708 4819 -1345 2218 82 0 3 chr3 20010389 20010712 -198026446 - AluSq SINE Alu 0 322 1 2220 242 52 37 chr3 20010712 20011773 -198025385 + L1ME2 LINE L1 4819 6155 -9 180 0 0 0 chr3 20011785 20011805 -198025353 + (CAA)n Simple_repeat Simple_repeat 2 21 0 380 289 53 59 chr3 20012122 20012309 -198024849 - MIR SINE MIR -75 187 2 475 322 192 1 chr3 20012508 20012946 -198024212 - L2 LINE L2 -253 3060 2537 208 252 96 61 chr3 20013363 20013478 -198023680 - MIR3 SINE MIR -3 205 87 684 226 0 7 chr3 20013820 20013957 -198023201 - MER58A DNA MER1_type 0 136 1 246 320 31 0 chr3 20014057 20014154 -198023004 + MIR SINE MIR 30 129 -79 295 311 19 9 chr3 20015038 20015144 -198022014 + MIR SINE MIR 49 155 -107 220 167 28 28 chr3 20015306 20015378 -198021780 + CT-rich Low_complexity Low_complexity 4 75 0 362 300 111 12 chr3 20015379 20015808 -198021350 + L2 LINE L2 2681 3217 -96 180 111 0 0 chr3 20016361 20016388 -198020770 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 198 330 96 0 chr3 20016442 20016536 -198020622 + MIR SINE MIR 103 205 -57 562 144 21 0 chr3 20016538 20016635 -198020523 - MER58A DNA MER1_type 0 224 126 205 291 25 0 chr3 20017329 20017408 -198019750 - MIR SINE MIR -124 138 58 283 242 15 0 chr3 20017521 20017587 -198019571 + MIR SINE MIR 117 183 -79 281 203 0 17 chr3 20018161 20018220 -198018938 + MER58A DNA MER1_type 3 60 -164 394 206 56 63 chr3 20018485 20018611 -198018547 + MER69 DNA AcHobo 1 125 -2401 23 54 0 0 chr3 20018614 20018651 -198018507 + AT_rich Low_complexity Low_complexity 1 37 0 3159 167 27 20 chr3 20018700 20018752 -198018406 - L1MB3 LINE L1 0 6183 6133 2085 106 3 7 chr3 20018752 20019044 -198018114 - AluSc SINE Alu -18 291 1 3159 167 27 20 chr3 20019044 20019577 -198017581 - L1MB3 LINE L1 -50 6133 5594 1076 164 48 0 chr3 20019591 20019780 -198017378 - L1MA5A LINE L1 -4 6293 6096 1680 202 43 60 chr3 20019806 20019937 -198017221 - L1MB3 LINE L1 -591 5580 5448 2042 128 0 0 chr3 20019937 20020233 -198016925 - AluSg SINE Alu -14 296 1 2187 64 51 3 chr3 20020238 20020533 -198016625 - AluSc SINE Alu 0 309 1 1680 202 43 60 chr3 20020533 20021021 -198016137 - L1MB3 LINE L1 -727 5444 4973 189 0 0 0 chr3 20021025 20021046 -198016112 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1072 100 13 7 chr3 20021069 20021219 -198015939 - AluSq/x SINE Alu -162 151 1 892 179 5 47 chr3 20021221 20021411 -198015747 - L1MB3 LINE L1 -1155 4991 4810 703 209 26 13 chr3 20021414 20021567 -198015591 + MER58A DNA MER1_type 43 197 -27 2041 132 0 3 chr3 20023024 20023327 -198013831 - AluSx SINE Alu -9 303 2 366 318 61 41 chr3 20023334 20023579 -198013579 - L1MC4 LINE L1 0 8042 7793 482 283 61 0 chr3 20024326 20024506 -198012652 - MIR SINE MIR -25 237 47 266 276 20 10 chr3 20024626 20024724 -198012434 + MIR SINE MIR 40 138 -124 193 167 93 0 chr3 20025479 20025533 -198011625 - MIR SINE MIR -94 114 56 250 266 169 0 chr3 20025676 20025853 -198011305 - L2 LINE L2 -215 3057 2851 1845 181 29 47 chr3 20025903 20026284 -198010874 - MLT1A2 LTR MaLR 0 374 1 2175 89 0 0 chr3 20027248 20027529 -198009629 - AluSc SINE Alu -28 281 1 217 313 0 12 chr3 20027573 20027656 -198009502 - MIR SINE MIR 0 262 181 2202 93 10 0 chr3 20027656 20027956 -198009202 + AluSx SINE Alu 1 303 -9 1708 168 102 14 chr3 20027975 20028327 -198008831 - MSTA LTR MaLR 0 428 46 208 274 41 0 chr3 20029038 20029111 -198008047 - MIR SINE MIR -110 152 77 1661 127 19 8 chr3 20029244 20029512 -198007646 + AluSg SINE Alu 21 291 -19 316 209 35 0 chr3 20029593 20029679 -198007479 - L1MB3 LINE L1 -1 6182 6094 237 250 0 0 chr3 20030355 20030403 -198006755 + L2 LINE L2 3216 3263 -9 269 282 39 13 chr3 20030729 20030807 -198006351 + MIR SINE MIR 66 145 -63 1958 172 16 19 chr3 20031380 20031746 -198005412 - MLT1A1 LTR MaLR 0 365 1 327 320 39 34 chr3 20032831 20033037 -198004121 - L3 LINE CR1 -28 1549 1343 2270 76 3 16 chr3 20033286 20033589 -198003569 - AluSp SINE Alu -14 299 1 595 297 28 10 chr3 20034207 20034584 -198002574 + LTR16C LTR ERVL 40 491 0 238 327 40 10 chr3 20034584 20034685 -198002473 - L2 LINE L2 -239 3033 2930 415 309 103 30 chr3 20034725 20035200 -198001958 + L1M4 LINE L1 3498 4007 -2139 269 103 0 0 chr3 20035682 20035721 -198001437 - L1ME3 LINE L1 -8 6154 6116 405 304 70 20 chr3 20035909 20036110 -198001048 + MIR SINE MIR 25 235 -27 433 103 0 0 chr3 20036691 20036749 -198000409 - Alu SINE Alu -259 59 2 244 388 27 13 chr3 20036789 20037013 -198000145 - L2 LINE L2 -377 2937 2711 582 299 81 42 chr3 20037585 20037920 -197999238 - L2 LINE L2 -8 3305 2958 302 293 48 32 chr3 20038042 20038230 -197998928 - L1M4 LINE L1 -3432 2714 2524 * 1029 248 30 87 chr3 20038219 20038297 -197998861 + L1M4 LINE L1 3347 3428 -2718 2295 73 0 10 chr3 20038297 20038598 -197998560 + AluY SINE Alu 1 298 -13 1029 248 30 87 chr3 20038598 20038818 -197998340 + L1M4 LINE L1 3428 3659 -2487 862 165 0 0 chr3 20038818 20038951 -197998207 - FLAM_A SINE Alu 0 133 1 1029 248 30 87 chr3 20038951 20039112 -197998046 + L1M4 LINE L1 3659 3780 -2366 2139 150 0 0 chr3 20039112 20039419 -197997739 + AluSx SINE Alu 1 307 -5 1029 248 30 87 chr3 20039419 20039453 -197997705 + L1M4 LINE L1 3780 3814 -2332 199 280 72 48 chr3 20039559 20039684 -197997474 + MIR SINE MIR 65 192 -70 353 279 26 45 chr3 20040482 20040636 -197996522 + MIR3 SINE MIR 2 152 -56 492 260 159 62 chr3 20041584 20041973 -197995185 + LTR33A LTR ERVL 77 503 -20 551 141 0 0 chr3 20042076 20042161 -197994997 - AluSg SINE Alu -224 86 2 658 216 36 30 chr3 20042282 20042449 -197994709 - LTR38 LTR ERV1 -386 170 3 371 257 9 19 chr3 20042755 20042860 -197994298 + MIR SINE MIR 88 191 -71 588 248 55 23 chr3 20042996 20043201 -197993957 - L1ME2 LINE L1 -76 6090 5874 559 243 0 40 chr3 20043201 20043349 -197993809 + FRAM SINE Alu 1 135 -41 457 212 73 36 chr3 20043512 20043649 -197993509 - L1M3 LINE L1 -594 5577 5436 1912 123 0 40 chr3 20043678 20044002 -197993156 - AluSx SINE Alu -1 311 1 1124 202 111 0 chr3 20044078 20044321 -197992837 + LTR48B LTR ERV1 1 270 -374 4092 103 9 4 chr3 20044332 20044883 -197992275 - MER41A LTR ERV1 0 554 1 701 157 45 8 chr3 20044891 20045007 -197992151 - MER41B LTR ERV1 0 635 515 367 146 0 0 chr3 20045007 20045062 -197992096 + Alu SINE Alu 1 55 -253 241 240 130 30 chr3 20045320 20045420 -197991738 - MIR SINE MIR -2 260 151 411 224 28 101 chr3 20047653 20047719 -197989439 + L1M4 LINE L1 4642 4711 -1435 2231 97 0 0 chr3 20047719 20048019 -197989139 + AluSg SINE Alu 1 300 -10 411 224 28 101 chr3 20048019 20048131 -197989027 + L1M4 LINE L1 4711 4807 -1339 2087 115 0 13 chr3 20048143 20048455 -197988703 + AluSx SINE Alu 5 312 0 2001 93 4 4 chr3 20048691 20048969 -197988189 + AluSq SINE Alu 1 278 -35 369 43 0 0 chr3 20048972 20049019 -197988139 + (CA)n Simple_repeat Simple_repeat 1 47 0 669 103 0 10 chr3 20049020 20049117 -197988041 + AluS SINE Alu 1 96 -216 3414 62 0 0 chr3 20049237 20049673 -197987485 - HUERS-P1 LTR ERV1 -646 5617 5182 366 335 0 0 chr3 20049683 20049793 -197987365 + L1MC4 LINE L1 6614 6703 -1339 * 385 194 0 0 chr3 20049731 20049798 -197987360 - L1MC4 LINE L1 -1339 6703 6637 2199 113 0 0 chr3 20049803 20050105 -197987053 - AluSx SINE Alu -10 302 1 321 321 45 0 chr3 20050110 20050222 -197986936 - MIR SINE MIR -62 146 30 236 236 42 28 chr3 20050213 20050285 -197986873 + MIR SINE MIR 118 190 -72 * 1671 78 9 0 chr3 20050794 20051012 -197986146 - AluSx SINE Alu -92 220 1 328 81 0 3 chr3 20051013 20051071 -197986087 - L1M LINE L1 -734 5428 5372 2111 88 0 7 chr3 20051072 20051368 -197985790 - AluY SINE Alu -17 294 1 330 206 35 136 chr3 20051667 20051828 -197985330 + MIR SINE MIR 18 160 -62 218 254 162 0 chr3 20052626 20052719 -197984439 - MIR SINE MIR -69 139 31 1132 180 76 0 chr3 20052946 20053196 -197983962 - L1M3 LINE L1 -359 5824 5556 2207 69 6 47 chr3 20053197 20053515 -197983643 - AluSp SINE Alu -8 305 1 724 183 58 47 chr3 20053516 20053707 -197983451 - Charlie1 DNA MER1_type -572 2189 1997 528 128 0 0 chr3 20053726 20053804 -197983354 - AluJo SINE Alu -8 304 227 952 124 85 13 chr3 20053804 20053957 -197983201 - AluJo SINE Alu -148 164 1 1646 144 3 56 chr3 20054021 20054326 -197982832 + AluJo SINE Alu 1 289 -23 2123 95 28 0 chr3 20054346 20054631 -197982527 + AluSc SINE Alu 1 293 -16 459 260 90 0 chr3 20055551 20055751 -197981407 - L1M4 LINE L1 -2085 4061 3844 2123 107 7 3 chr3 20055753 20056053 -197981105 - AluSg SINE Alu -9 301 1 400 288 71 43 chr3 20056085 20056269 -197980889 + L1ME4a LINE L1 5926 6114 -7 2130 101 7 0 chr3 20056341 20056638 -197980520 + AluSx SINE Alu 1 299 -13 295 314 107 0 chr3 20056674 20056833 -197980325 + L2 LINE L2 3111 3286 -27 460 252 61 0 chr3 20056927 20057058 -197980100 + LTR16A1 LTR ERVL 190 328 -129 1314 98 0 0 chr3 20057158 20057331 -197979827 + AluSq SINE Alu 130 302 -11 189 0 0 0 chr3 20057400 20057421 -197979737 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1699 109 134 0 chr3 20057523 20057798 -197979360 - AluSx SINE Alu 0 312 1 2297 92 0 0 chr3 20057803 20058108 -197979050 - AluY SINE Alu -6 305 1 39 0 0 0 chr3 20058170 20058209 -197978949 + AT_rich Low_complexity Low_complexity 1 39 0 1330 142 14 89 chr3 20058234 20058383 -197978775 - AluJo SINE Alu -44 268 109 2035 96 18 3 chr3 20058383 20058665 -197978493 + AluSq SINE Alu 1 286 -27 261 0 0 0 chr3 20058665 20058694 -197978464 + (CCA)n Simple_repeat Simple_repeat 1 29 0 1330 142 14 89 chr3 20058694 20058705 -197978453 - AluJo SINE Alu -202 110 100 2117 99 0 0 chr3 20058705 20058988 -197978170 + AluSg SINE Alu 1 283 -27 1848 88 12 0 chr3 20058988 20059235 -197977923 + AluSq SINE Alu 43 294 -19 1330 142 14 89 chr3 20059235 20059352 -197977806 - AluJo SINE Alu -210 102 9 274 157 14 14 chr3 20060234 20060304 -197976854 + (CA)n Simple_repeat Simple_repeat 1 70 0 232 345 0 0 chr3 20060395 20060492 -197976666 + MIR SINE MIR 63 160 -48 505 276 176 66 chr3 20060514 20060894 -197976264 + Charlie8 DNA MER1_type 25 446 -1971 1398 122 0 0 chr3 20061641 20061838 -197975320 + AluSg/x SINE Alu 79 275 -37 2275 100 0 6 chr3 20062144 20062455 -197974703 + AluY SINE Alu 1 309 -2 837 240 142 79 chr3 20062620 20062979 -197974179 - MLT1H LTR MaLR 0 549 151 3279 108 101 41 chr3 20062979 20063422 -197973736 - MER4A LTR ERV1 -4 596 109 2091 119 0 0 chr3 20063422 20063740 -197973418 + AluSx SINE Alu 1 318 0 3279 108 101 41 chr3 20063740 20063856 -197973302 - MER4A LTR ERV1 -491 109 1 837 240 142 79 chr3 20063856 20063967 -197973191 - MLT1H LTR MaLR -398 151 49 864 167 17 11 chr3 20063967 20064141 -197973017 + L1M3 LINE L1 5411 5585 -598 511 314 11 11 chr3 20064421 20064612 -197972546 - AluY SINE Alu -119 192 2 22 0 0 0 chr3 20064616 20064638 -197972520 + AT_rich Low_complexity Low_complexity 1 22 0 2284 93 0 3 chr3 20064639 20064939 -197972219 + AluSp SINE Alu 1 299 -14 1933 118 14 7 chr3 20064951 20065248 -197971910 + AluSp SINE Alu 1 299 -14 1367 305 68 31 chr3 20065259 20065863 -197971295 - L1ME3A LINE L1 -50 6120 5495 1651 180 0 7 chr3 20065874 20066174 -197970984 - AluJb SINE Alu -14 298 1 4316 218 24 8 chr3 20066206 20067586 -197969572 - L1MB3 LINE L1 -7 6176 4772 320 292 128 9 chr3 20068141 20068294 -197968864 - MIR SINE MIR -63 145 30 245 186 0 0 chr3 20068660 20068703 -197968455 + L2 LINE L2 2715 2757 -557 425 321 53 5 chr3 20068973 20069163 -197967995 + MIR SINE MIR 14 212 -50 213 255 33 0 chr3 20069394 20069462 -197967696 - MIR SINE MIR -65 143 73 430 293 58 10 chr3 20069987 20070195 -197966963 - L2 LINE L2 -260 3053 2836 199 355 153 0 chr3 20070258 20070447 -197966711 - L2 LINE L2 -619 2695 2478 268 265 36 0 chr3 20071200 20071283 -197965875 - HAL1 LINE L1 -1155 1352 1267 364 240 40 34 chr3 20071805 20072032 -197965126 + (CTCA)n Simple_repeat Simple_repeat 1 228 0 340 319 6 6 chr3 20072040 20072206 -197964952 + (CA)n Simple_repeat Simple_repeat 1 166 0 782 161 0 29 chr3 20072922 20073091 -197964067 - FLAM_C SINE Alu 0 165 1 271 336 22 22 chr3 20073625 20073759 -197963399 - MIR SINE MIR -50 212 79 283 359 70 6 chr3 20078216 20078387 -197958771 - MIR SINE MIR -62 146 11 805 169 131 0 chr3 20078708 20078868 -197958290 + MER5A DNA MER1_type 5 185 -4 183 80 0 0 chr3 20079197 20079222 -197957936 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 782 205 122 0 chr3 20079222 20079378 -197957780 - FAM SINE Alu 0 175 1 224 331 120 23 chr3 20079909 20080084 -197957074 - L3 LINE CR1 -765 812 621 493 231 25 0 chr3 20080218 20080339 -197956819 + L2 LINE L2 3144 3267 -5 1489 201 7 7 chr3 20080667 20080956 -197956202 + AluJb SINE Alu 1 289 -23 2303 70 3 26 chr3 20081318 20081630 -197955528 - AluSc SINE Alu -4 305 1 2301 78 7 0 chr3 20081768 20082064 -197955094 - AluSg SINE Alu -12 298 1 308 197 15 15 chr3 20082191 20082257 -197954901 + MIR SINE MIR 112 177 -85 611 167 0 65 chr3 20082268 20082406 -197954752 + FLAM_A SINE Alu 13 141 -1 219 266 76 0 chr3 20083357 20083436 -197953722 - MIR SINE MIR -75 133 49 2982 153 20 43 chr3 20083478 20084034 -197953124 + L1MB3 LINE L1 5640 6182 -1 655 299 56 23 chr3 20084752 20085056 -197952102 + LTR37A LTR ERV1 34 347 -79 380 250 117 16 chr3 20086458 20086586 -197950572 - MIR3 SINE MIR -49 159 19 247 300 0 0 chr3 20088393 20088453 -197948705 + L2 LINE L2 3228 3287 -26 583 281 24 48 chr3 20089334 20089544 -197947614 - L3 LINE CR1 -2 1575 1371 367 252 27 0 chr3 20090088 20090199 -197946959 + Charlie8 DNA MER1_type 93 206 -2211 4111 234 80 77 chr3 20090253 20091353 -197945805 + L1M4b LINE L1 95 1189 -5666 180 77 0 0 chr3 20091353 20091379 -197945779 + (TG)n Simple_repeat Simple_repeat 2 27 0 4111 234 80 77 chr3 20091379 20091617 -197945541 + L1M4b LINE L1 1189 1425 -5430 452 0 52 0 chr3 20091617 20091675 -197945483 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 4111 234 80 77 chr3 20091675 20091869 -197945289 + L1M4b LINE L1 1425 1627 -5228 2318 68 3 19 chr3 20091869 20092177 -197944981 - AluY SINE Alu -8 303 1 4111 234 80 77 chr3 20092177 20092285 -197944873 + L1M4b LINE L1 1627 1733 -5122 1405 135 27 84 chr3 20092669 20092965 -197944193 - AluJb SINE Alu -21 291 13 817 220 28 16 chr3 20095518 20095700 -197941458 + MER20 DNA MER1_type 30 213 -6 218 254 162 0 chr3 20096193 20096286 -197940872 + MIR SINE MIR 31 139 -69 581 308 28 36 chr3 20096502 20096755 -197940403 + MLT1I LTR MaLR 155 405 -4 312 212 35 136 chr3 20097084 20097245 -197939913 - MIR SINE MIR -62 146 18 2419 74 0 0 chr3 20097544 20097843 -197939315 + AluSg SINE Alu 1 299 -11 190 211 18 53 chr3 20098380 20098437 -197938721 - L2 LINE L2 -21 3251 3197 226 359 167 0 chr3 20098467 20098718 -197938440 + L2 LINE L2 3019 3311 -2 202 331 71 16 chr3 20099163 20099290 -197937868 + MIR SINE MIR 60 193 -69 235 333 0 0 chr3 20099657 20099720 -197937438 + MIR SINE MIR 110 172 -90 281 216 101 65 chr3 20100702 20100841 -197936317 - Charlie8 DNA MER1_type -1914 503 360 297 281 50 62 chr3 20100946 20101106 -197936052 + Charlie8 DNA MER1_type 25 182 -2235 352 311 8 33 chr3 20101267 20101388 -197935770 + MIR SINE MIR 82 199 -27 397 301 88 18 chr3 20101884 20102110 -197935048 + L1ME LINE L1 5520 5761 -360 302 193 0 0 chr3 20102404 20102461 -197934697 + L2 LINE L2 3211 3267 -5 882 193 51 6 chr3 20103416 20103592 -197933566 - MLT1A1 LTR MaLR -180 185 2 866 166 32 6 chr3 20103592 20103747 -197933411 + MLT1A1 LTR MaLR 206 364 -1 362 263 128 13 chr3 20104193 20104349 -197932809 + MIR SINE MIR 77 250 -12 197 347 157 0 chr3 20104381 20104502 -197932656 - MIR SINE MIR -109 153 14 266 317 129 29 chr3 20105259 20105499 -197931659 + L2 LINE L2 3050 3313 0 236 241 12 84 chr3 20105634 20105717 -197931441 - L2 LINE L2 -3 3269 3193 2226 106 3 0 chr3 20105730 20106041 -197931117 + AluSp SINE Alu 2 313 0 453 325 13 0 chr3 20106390 20106541 -197930617 - MIR SINE MIR -1 261 109 2070 124 0 10 chr3 20107314 20107612 -197929546 - AluSx SINE Alu -15 297 3 474 253 19 32 chr3 20107711 20107869 -197929289 - AluSg/x SINE Alu -23 287 132 1776 121 40 4 chr3 20108040 20108312 -197928846 - AluSg SINE Alu -28 282 1 2207 101 7 0 chr3 20108399 20108697 -197928461 - AluSx SINE Alu -12 300 1 739 288 22 18 chr3 20108790 20109064 -197928094 + L1ME LINE L1 5296 5570 -594 1940 139 30 0 chr3 20109079 20109382 -197927776 - AluSq SINE Alu -1 312 1 276 382 7 21 chr3 20109806 20109950 -197927208 - MIR3 SINE MIR -25 183 42 366 252 29 10 chr3 20110264 20110367 -197926791 + MIR SINE MIR 21 125 -83 916 153 32 32 chr3 20110399 20110588 -197926570 + MER53 DNA DNA 1 189 0 490 264 21 14 chr3 20110628 20110768 -197926390 + MIR3 SINE MIR 3 143 -65 1661 130 69 11 chr3 20110834 20111110 -197926048 + AluJb SINE Alu 1 292 -20 260 203 368 15 chr3 20111740 20111873 -197925285 + MLT1K LTR MaLR 387 566 -22 299 250 10 42 chr3 20112643 20112739 -197924419 + MIR SINE MIR 109 201 -61 695 88 0 0 chr3 20112945 20113036 -197924122 - AluS SINE Alu -221 92 2 1089 242 53 22 chr3 20113069 20113126 -197924032 + MER97a DNA MER1_type? 204 258 -636 1690 175 13 10 chr3 20113126 20113434 -197923724 - AluJo SINE Alu -3 309 1 1089 242 53 22 chr3 20113434 20113732 -197923426 + MER97a DNA MER1_type? 258 570 -324 437 234 73 32 chr3 20113744 20113992 -197923166 + MER97c DNA MER1_type? 830 1087 -3 210 128 0 0 chr3 20114241 20114280 -197922878 + (TG)n Simple_repeat Simple_repeat 1 39 0 2120 188 22 71 chr3 20114288 20114780 -197922378 - MLT2B2 LTR ERVL -38 447 3 797 195 19 61 chr3 20115516 20115778 -197921380 + L1MC5 LINE L1 7473 7723 -238 2767 114 24 53 chr3 20115913 20116343 -197920815 + L1MB3 LINE L1 5705 6146 -37 2007 103 0 60 chr3 20116343 20116662 -197920496 + AluSq SINE Alu 1 300 -13 1016 211 0 0 chr3 20116671 20116842 -197920316 + FAM SINE Alu 1 171 -4 2767 114 24 53 chr3 20116842 20116892 -197920266 + L1MB3 LINE L1 6154 6181 -2 498 256 52 6 chr3 20116895 20117067 -197920091 + L1M4 LINE L1 2835 3014 -3132 1388 212 21 153 chr3 20117071 20117496 -197919662 + MLT2B1 LTR ERVL 5 373 -41 1545 180 55 3 chr3 20117526 20117815 -197919343 - MER7A DNA MER2_type -43 303 2 325 93 17 2 chr3 20117815 20117872 -197919286 + MLT2C2 LTR ERVL 415 464 0 320 335 125 45 chr3 20118009 20118233 -197918925 + L3 LINE CR1 1242 1483 -94 1905 142 3 3 chr3 20118311 20118607 -197918551 + AluSq SINE Alu 1 296 -17 733 196 0 8 chr3 20118990 20119123 -197918035 + AluJo/FLAM SINE Alu 2 133 -179 1853 112 0 4 chr3 20119126 20119385 -197917773 + AluSx SINE Alu 1 258 -54 244 315 0 0 chr3 20119402 20119475 -197917683 - L1M2 LINE L1 -754 5537 5465 571 245 0 14 chr3 20120086 20120229 -197916929 - MIR SINE MIR -113 149 9 196 339 48 26 chr3 20120491 20120680 -197916478 + L2 LINE L2 2921 3113 -159 316 230 122 74 chr3 20121047 20121195 -197915963 + MER45C DNA AcHobo 541 695 -258 2941 167 44 34 chr3 20121562 20121708 -197915450 + L1MB3 LINE L1 5465 5608 -575 2238 103 0 3 chr3 20121708 20122010 -197915148 + AluSq SINE Alu 1 301 -12 2941 167 44 34 chr3 20122010 20122312 -197914846 + L1MB3 LINE L1 5608 5925 -258 2371 91 0 0 chr3 20122312 20122619 -197914539 - AluSg SINE Alu -3 307 1 2941 167 44 34 chr3 20122619 20122845 -197914313 + L1MB3 LINE L1 5925 6147 -36 301 86 0 86 chr3 20122838 20122896 -197914262 + L1MA9 LINE L1 5995 6047 -244 * 896 206 6 0 chr3 20123092 20123262 -197913896 - AluJb SINE Alu -5 307 137 1373 148 86 52 chr3 20123705 20123996 -197913162 - AluJo SINE Alu -9 303 3 1708 166 3 13 chr3 20127122 20127423 -197909735 + AluJo SINE Alu 5 302 -10 1997 116 7 3 chr3 20127423 20127717 -197909441 + AluSp SINE Alu 1 295 -18 435 291 83 29 chr3 20129283 20129489 -197907669 + Charlie2a DNA MER1_type 734 927 -1935 1943 106 13 26 chr3 20129489 20129792 -197907366 - AluSq SINE Alu -14 299 1 435 291 83 29 chr3 20129792 20129813 -197907345 + Charlie2a DNA MER1_type 927 945 -1917 2113 81 9 43 chr3 20129813 20130135 -197907023 - AluY SINE Alu 0 311 1 435 291 83 29 chr3 20130135 20130147 -197907011 + Charlie2a DNA MER1_type 945 987 -1875 340 121 229 12 chr3 20130212 20130295 -197906863 - AluSc SINE Alu 0 299 199 300 311 72 31 chr3 20130445 20130638 -197906520 + L1MC4a LINE L1 5793 5993 -1815 1561 164 53 27 chr3 20132782 20133081 -197904077 + AluJo SINE Alu 1 307 -5 222 346 24 44 chr3 20133535 20133740 -197903418 + L2 LINE L2 2921 3121 -151 316 230 122 74 chr3 20134092 20134240 -197902918 + MER45C DNA AcHobo 541 695 -258 267 246 16 0 chr3 20134238 20134299 -197902859 + MER45C DNA AcHobo 892 953 0 * 273 194 65 0 chr3 20134600 20134662 -197902496 - MIR SINE MIR -73 189 124 378 275 37 0 chr3 20135051 20135160 -197901998 + L3 LINE CR1 1356 1468 -109 358 353 46 7 chr3 20136211 20136387 -197900771 + MIR SINE MIR 3 183 -72 180 194 224 15 chr3 20136794 20136861 -197900297 + L3 LINE CR1 1171 1251 -326 258 396 58 7 chr3 20137026 20137180 -197899978 - MIR SINE MIR -53 209 48 232 256 141 33 chr3 20137190 20137311 -197899847 - MER3 DNA MER1_type 0 209 76 831 326 83 12 chr3 20137539 20137962 -197899196 - L1MC4 LINE L1 -155 7887 7435 349 317 29 18 chr3 20138236 20138444 -197898714 + MIR SINE MIR 22 230 -32 186 325 125 8 chr3 20139048 20139168 -197897990 + MER5A DNA MER1_type 34 167 -22 2171 102 0 3 chr3 20139873 20140177 -197896981 + AluSx SINE Alu 1 303 -9 251 289 93 0 chr3 20140647 20140744 -197896414 + L1MD3 LINE L1 7672 7777 -218 310 145 0 32 chr3 20140746 20140808 -197896350 + L1MC2 LINE L1 6272 6331 -13 1565 181 13 26 chr3 20140810 20141119 -197896039 + AluJo SINE Alu 2 306 -6 1156 280 34 9 chr3 20141630 20141955 -197895203 - L1MC1 LINE L1 -1 6332 6000 1709 164 27 65 chr3 20142077 20142444 -197894714 - MLT1A1 LTR MaLR -1 364 12 236 299 134 0 chr3 20143420 20143517 -197893641 - MIR3 SINE MIR -17 191 82 1263 225 101 52 chr3 20143957 20144517 -197892641 + MLT2B2 LTR ERVL 1 517 -3 395 256 214 6 chr3 20144565 20144733 -197892425 - MIR SINE MIR -28 234 32 262 297 20 0 chr3 20144935 20145036 -197892122 - MER113 DNA MER1_type? -405 116 14 427 273 0 0 chr3 20145909 20146008 -197891150 + MIR SINE MIR 63 161 -101 364 220 187 0 chr3 20146114 20146235 -197890923 + FRAM/FAM SINE Alu 1 84 -82 449 333 109 25 chr3 20146684 20146969 -197890189 - L2 LINE L2 0 3313 3005 1193 241 71 38 chr3 20147010 20147403 -197889755 - L1M4 LINE L1 -2236 3910 3501 2069 134 0 0 chr3 20147403 20147701 -197889457 + AluSg SINE Alu 1 298 -12 1193 241 71 38 chr3 20147701 20147731 -197889427 - L1M4 LINE L1 -2645 3501 3473 1070 243 14 25 chr3 20148110 20148386 -197888772 + MLT1A1 LTR MaLR 1 273 -92 193 351 136 7 chr3 20148385 20148539 -197888619 - MIR SINE MIR -12 250 77 * 575 149 0 11 chr3 20148737 20148831 -197888327 - AluSg/x SINE Alu -16 294 202 3430 45 6 57 chr3 20148931 20148972 -197888186 + HUERS-P1 LTR ERV1 5798 5840 -423 2058 128 3 0 chr3 20148972 20149256 -197887902 + AluSx SINE Alu 1 288 -24 210 37 0 0 chr3 20149256 20149283 -197887875 + (CA)n Simple_repeat Simple_repeat 2 28 0 2058 128 3 0 chr3 20149283 20149294 -197887864 + AluSx SINE Alu 288 297 -15 3430 45 6 57 chr3 20149294 20149743 -197887415 + HUERS-P1 LTR ERV1 5840 6263 0 2165 42 76 0 chr3 20149743 20150031 -197887127 + LTR8 LTR ERV1 1 310 -381 441 246 18 0 chr3 20150174 20150284 -197886874 - L2 LINE L2 -17 3255 3144 204 329 123 24 chr3 20150418 20150588 -197886570 + L3 LINE CR1 621 807 -770 1723 108 8 0 chr3 20151272 20151512 -197885646 - AluSx SINE Alu -70 242 1 328 81 0 3 chr3 20151513 20151571 -197885587 - L1M LINE L1 -736 5428 5372 1285 102 77 0 chr3 20151572 20151731 -197885427 - AluY SINE Alu -17 294 116 342 0 0 0 chr3 20151731 20151769 -197885389 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1285 102 77 0 chr3 20151769 20151805 -197885353 - AluY SINE Alu -195 116 84 430 192 26 105 chr3 20151806 20151860 -197885298 - L1M LINE L1 -799 5347 5290 1555 183 3 29 chr3 20151860 20152166 -197884992 - AluJb SINE Alu -2 310 13 430 192 26 105 chr3 20152166 20152290 -197884868 - L1M LINE L1 -856 5290 5209 495 245 22 28 chr3 20152399 20152556 -197884602 - L1MC4 LINE L1 -317 7587 7311 304 335 29 18 chr3 20152827 20153035 -197884123 + MIR SINE MIR 22 230 -32 293 250 0 0 chr3 20153686 20153750 -197883408 + AluS SINE Alu 226 289 -12 248 0 0 30 chr3 20153757 20153790 -197883368 + (CAA)n Simple_repeat Simple_repeat 2 33 0 403 356 120 5 chr3 20155166 20155382 -197881776 + MIR SINE MIR 16 256 -6 2090 124 0 0 chr3 20156273 20156571 -197880587 + AluSx SINE Alu 1 298 -14 1935 94 0 0 chr3 20156571 20156827 -197880331 + AluY SINE Alu 41 296 -15 1458 104 0 5 chr3 20156827 20157028 -197880130 + AluSg SINE Alu 2 201 -109 2462 57 0 10 chr3 20157028 20157342 -197879816 + AluY SINE Alu 1 311 0 418 221 24 24 chr3 20157478 20157605 -197879553 + L1MB3 LINE L1 5941 6067 -116 1405 135 27 84 chr3 20157753 20158049 -197879109 - AluJb SINE Alu -21 291 13 246 219 14 41 chr3 20159227 20159300 -197877858 - MER66A LTR ERV1 -379 99 29 368 221 117 45 chr3 20159316 20159470 -197877688 - L1ME LINE L1 -463 5701 5537 586 112 0 34 chr3 20159472 20159561 -197877597 + AluJ/FLAM SINE Alu 2 87 -225 822 204 79 5 chr3 20159562 20159778 -197877380 - L1ME LINE L1 -616 5548 5317 1662 135 0 121 chr3 20159781 20159985 -197877173 - AluJb SINE Alu -2 300 152 1925 127 14 3 chr3 20159985 20160277 -197876881 - AluSq SINE Alu -18 295 1 1662 135 0 121 chr3 20160277 20160412 -197876746 - AluJb SINE Alu -150 152 2 727 156 75 6 chr3 20160469 20160658 -197876500 - AluSp SINE Alu 0 318 119 262 315 94 7 chr3 20160940 20161089 -197876069 + LTR33A LTR ERVL 1 162 -361 277 246 0 0 chr3 20161295 20161352 -197875806 + LTR33A LTR ERVL 467 523 0 22 35 0 0 chr3 20161428 20161457 -197875701 + AT_rich Low_complexity Low_complexity 1 29 0 1437 159 82 0 chr3 20161613 20161858 -197875300 - AluJo SINE Alu -45 267 3 2643 161 4 28 chr3 20161862 20162370 -197874788 - L1M4 LINE L1 -362 5822 5327 1565 165 7 21 chr3 20162372 20162663 -197874495 - AluSx SINE Alu -13 299 13 351 320 115 0 chr3 20164301 20164457 -197872701 + MIR3 SINE MIR 24 197 -11 343 323 62 12 chr3 20166314 20166475 -197870683 - L3 LINE CR1 -529 1048 880 186 263 0 0 chr3 20166492 20166530 -197870628 + MIR SINE MIR 210 247 -15 283 368 61 36 chr3 20167578 20167855 -197869303 + L3 LINE CR1 1161 1444 -133 282 306 61 0 chr3 20168592 20168690 -197868468 + MER5A DNA MER1_type 1 104 -85 257 311 130 17 chr3 20169230 20169407 -197867751 - L3 LINE CR1 -50 1527 1331 186 291 73 0 chr3 20170358 20170413 -197866745 + L2 LINE L2 3250 3308 -5 731 136 0 0 chr3 20172018 20172128 -197865030 - FRAM SINE Alu -4 172 63 189 0 81 27 chr3 20172510 20172547 -197864611 + A-rich Low_complexity Low_complexity 2 40 0 303 308 58 36 chr3 20172571 20172795 -197864363 + L2 LINE L2 2709 2937 -377 380 250 117 16 chr3 20173257 20173385 -197863773 - MIR3 SINE MIR -49 159 19 225 316 61 0 chr3 20174703 20174817 -197862341 + L1MC5 LINE L1 7714 7834 -127 1672 165 16 13 chr3 20174921 20175042 -197862116 + AluJb SINE Alu 1 120 -192 207 0 0 0 chr3 20175042 20175065 -197862093 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1672 165 16 13 chr3 20175065 20175252 -197861906 + AluJb SINE Alu 120 310 -2 773 258 74 37 chr3 20175314 20175721 -197861437 - MER113 DNA MER1_type? -99 422 1 2028 123 13 0 chr3 20176086 20176386 -197860772 - AluSq SINE Alu -9 304 1 1162 185 65 17 chr3 20176514 20176806 -197860352 - L1MD1 LINE L1 -12 6230 5925 26 0 0 0 chr3 20177112 20177138 -197860020 + GC_rich Low_complexity Low_complexity 1 26 0 1536 131 72 56 chr3 20178189 20178353 -197858805 - AluSx SINE Alu -1 311 151 207 0 0 0 chr3 20178353 20178376 -197858782 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1536 131 72 56 chr3 20178376 20178391 -197858767 - AluSx SINE Alu -161 151 138 1474 71 5 5 chr3 20178391 20178587 -197858571 - AluSq SINE Alu -43 270 75 1536 131 72 56 chr3 20178587 20178712 -197858446 - AluSx SINE Alu -174 138 1 1099 91 0 0 chr3 20178713 20178856 -197858302 - AluSq/x SINE Alu -170 143 1 268 352 49 21 chr3 20179875 20180017 -197857141 - MIR3 SINE MIR -33 175 30 226 287 30 10 chr3 20180557 20180658 -197856500 - LTR16A1 LTR ERVL 0 457 355 2119 89 29 0 chr3 20181926 20182207 -197854951 - AluSc SINE Alu -16 293 5 246 337 132 26 chr3 20182221 20182607 -197854551 - L2 LINE L2 -31 3241 2815 240 297 137 33 chr3 20183191 20183294 -197853864 - MER113 DNA MER1_type? -96 425 334 1095 187 21 21 chr3 20183294 20183535 -197853623 - L1MB3 LINE L1 -2 6181 5941 240 297 137 33 chr3 20183535 20183613 -197853545 - MER113 DNA MER1_type? -187 334 225 812 119 0 0 chr3 20183675 20183793 -197853365 - AluY SINE Alu -4 307 190 225 32 32 0 chr3 20183934 20183965 -197853193 + L1MB3 LINE L1 5443 5474 -697 2034 130 0 3 chr3 20183976 20184301 -197852857 - AluSx SINE Alu 0 324 1 4005 132 28 28 chr3 20184342 20184992 -197852166 + L1MB3 LINE L1 5477 6126 -57 1954 114 0 58 chr3 20184992 20185317 -197851841 + AluSq SINE Alu 1 306 -7 969 222 0 0 chr3 20185320 20185491 -197851667 + FAM SINE Alu 1 171 -4 4005 132 28 28 chr3 20185491 20185541 -197851617 + L1MB3 LINE L1 6127 6181 -2 372 291 52 6 chr3 20185544 20185716 -197851442 + L1M4 LINE L1 2835 3014 -3132 484 178 19 9 chr3 20185720 20185827 -197851331 + MLT2B2 LTR ERVL 5 112 -403 228 336 77 0 chr3 20185998 20186102 -197851056 + L1MC/D LINE L1 5800 5911 -1897 2380 71 0 3 chr3 20186339 20186648 -197850510 - AluSc SINE Alu -1 308 1 182 347 93 20 chr3 20186707 20186857 -197850301 + L2 LINE L2 3112 3272 0 258 345 55 12 chr3 20187184 20187349 -197849809 + MIR SINE MIR 69 240 -22 392 252 0 9 chr3 20187839 20187946 -197849212 - L1M4 LINE L1 -1506 4640 4535 2170 100 3 17 chr3 20187950 20188250 -197848908 + AluSp SINE Alu 3 298 -15 5730 136 169 26 chr3 20188260 20189383 -197847775 + pTR5 LTR ERV1 742 2025 -413 420 224 10 0 chr3 20189383 20189481 -197847677 + LTR30 LTR ERV1 544 642 -80 1286 118 0 0 chr3 20189481 20189667 -197847491 + pTR5 LTR ERV1 66 251 -2187 253 275 28 35 chr3 20189769 20189911 -197847247 + MER66B LTR ERV1 305 445 -41 687 250 35 104 chr3 20189929 20189980 -197847178 + L1ME3 LINE L1 5713 5766 -396 2126 99 0 0 chr3 20189980 20190292 -197846866 + AluSg SINE Alu 1 310 0 687 250 35 104 chr3 20190292 20190423 -197846735 + L1ME3 LINE L1 5766 5904 -258 770 180 6 37 chr3 20190423 20190584 -197846574 - FRAM SINE Alu -10 156 1 687 250 35 104 chr3 20190584 20190776 -197846382 + L1ME3 LINE L1 5904 6062 -100 359 267 9 19 chr3 20190933 20191038 -197846120 - MIR SINE MIR -71 191 88 658 216 36 30 chr3 20191343 20191510 -197845648 + LTR38 LTR ERV1 3 170 -386 2057 107 17 0 chr3 20191630 20191921 -197845237 + AluSg SINE Alu 1 296 -14 2493 65 0 0 chr3 20191921 20192230 -197844928 + AluY SINE Alu 1 309 -2 2000 131 0 10 chr3 20192500 20192812 -197844346 + AluY SINE Alu 1 309 -2 894 121 0 0 chr3 20192950 20193074 -197844084 - AluSq/x SINE Alu -189 124 1 2406 72 3 0 chr3 20193085 20193389 -197843769 - AluSp SINE Alu -8 305 1 273 118 0 0 chr3 20193390 20193441 -197843717 - L1M4 LINE L1 -815 5331 5281 225 232 54 0 chr3 20193457 20193513 -197843645 + MIR SINE MIR 186 244 -18 434 271 46 7 chr3 20193516 20193667 -197843491 - MER112 DNA MER1_type -102 158 2 786 251 71 10 chr3 20193735 20194015 -197843143 + MER46C DNA MER2_type 1 298 -40 1147 232 74 20 chr3 20194015 20194352 -197842806 - LTR48B LTR ERV1 0 644 289 1071 74 7 0 chr3 20194352 20194500 -197842658 + MER41B LTR ERV1 1 149 -486 2559 83 6 14 chr3 20194500 20194861 -197842297 - LTR8 LTR ERV1 0 691 334 31 26 0 0 chr3 20195409 20195447 -197841711 + GC_rich Low_complexity Low_complexity 1 38 0 237 221 29 29 chr3 20195598 20195702 -197841456 + C-rich Low_complexity Low_complexity 5 108 0 23 54 0 0 chr3 20195719 20195756 -197841402 + GC_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 20195849 20195871 -197841287 + GC_rich Low_complexity Low_complexity 1 22 0 321 310 9 0 chr3 20197364 20197477 -197839681 + MIR SINE MIR 36 149 -113 237 224 0 0 chr3 20198114 20198163 -197838995 + L1M2 LINE L1 5489 5537 -763 1929 105 0 0 chr3 20198180 20198438 -197838720 - AluSx SINE Alu -54 258 1 978 188 96 8 chr3 20198439 20198679 -197838479 - L1MB7 LINE L1 -354 5830 5570 870 194 46 25 chr3 20198922 20199118 -197838040 + MER20 DNA MER1_type 20 219 0 2159 120 0 38 chr3 20199288 20199604 -197837554 + AluSq SINE Alu 1 304 -9 1891 147 38 10 chr3 20200980 20201272 -197835886 + AluSx SINE Alu 1 300 -12 355 197 0 0 chr3 20201372 20201443 -197835715 + AluSg/x SINE Alu 209 279 -21 261 0 0 0 chr3 20201444 20201473 -197835685 + (TA)n Simple_repeat Simple_repeat 1 29 0 2042 119 38 3 chr3 20202047 20202340 -197834818 - AluSg SINE Alu -7 303 1 2338 101 7 0 chr3 20202427 20202725 -197834433 - AluSx SINE Alu -12 300 1 681 288 22 18 chr3 20202818 20203092 -197834066 + L1ME LINE L1 5296 5570 -594 2191 141 0 0 chr3 20203107 20203419 -197833739 - AluSq SINE Alu -1 312 1 1098 161 136 13 chr3 20203495 20203731 -197833427 + LTR48B LTR ERV1 1 265 -379 2632 91 14 0 chr3 20203749 20204110 -197833048 - MER41A LTR ERV1 0 554 189 623 206 6 38 chr3 20254154 20254314 -197782844 - L1MC1 LINE L1 -297 6036 5882 886 268 0 9 chr3 20254322 20254546 -197782612 + AluJb SINE Alu 91 312 0 1858 144 19 2 chr3 20254546 20254945 -197782213 - L1MC1 LINE L1 -745 5401 5186 365 304 65 24 chr3 20254976 20255144 -197782014 + MIR SINE MIR 81 255 -7 245 294 103 24 chr3 20256012 20256138 -197781020 - Charlie8 DNA MER1_type -2261 156 21 2061 210 91 14 chr3 20256758 20257056 -197780102 + L1MC3 LINE L1 7171 7445 -340 726 200 0 22 chr3 20257056 20257191 -197779967 + FLAM_C SINE Alu 2 133 0 2061 210 91 14 chr3 20257191 20257463 -197779695 + L1MC3 LINE L1 7445 7785 0 256 331 22 14 chr3 20258324 20258463 -197778695 + L2 LINE L2 2856 2995 -277 439 314 69 40 chr3 20258500 20258847 -197778311 - HERV16 LTR ERVL -4539 457 101 862 273 69 54 chr3 20258849 20259292 -197777866 + MER77 LTR ERV1 292 709 -3 968 243 47 79 chr3 20259292 20259695 -197777463 + MER77-int LTR ERV1 19 408 -3783 349 284 37 9 chr3 20259701 20259810 -197777348 + MER77-int LTR ERV1 327 438 -3753 7032 252 81 69 chr3 20259853 20260837 -197776321 + MER77-int LTR ERV1 1227 2197 -1994 1707 159 65 0 chr3 20260837 20261127 -197776031 - AluJb SINE Alu -3 309 1 7032 252 81 69 chr3 20261127 20262263 -197774895 + MER77-int LTR ERV1 2197 3317 -874 207 0 0 0 chr3 20262263 20262286 -197774872 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2077 88 0 32 chr3 20262286 20262571 -197774587 - AluSx SINE Alu -36 276 1 7032 252 81 69 chr3 20262571 20263091 -197774067 + MER77-int LTR ERV1 3317 3911 -280 2396 81 3 0 chr3 20263091 20263401 -197773757 - AluSp SINE Alu -2 311 1 7032 252 81 69 chr3 20263401 20263630 -197773528 + MER77-int LTR ERV1 3911 4136 -55 235 133 117 33 chr3 20264031 20264091 -197773067 + MER77 LTR ERV1 204 268 -337 279 229 299 7 chr3 20264173 20264317 -197772841 + MER77 LTR ERV1 416 601 -4 180 299 75 0 chr3 20264588 20264655 -197772503 - MIR SINE MIR -117 145 74 308 247 53 9 chr3 20264991 20265128 -197772030 + Charlie8 DNA MER1_type 133 1378 -1039 282 308 51 0 chr3 20265208 20265325 -197771833 + MER112 DNA MER1_type 98 220 -40 258 283 71 0 chr3 20265326 20265425 -197771733 + MIR SINE MIR 24 129 -79 328 284 11 11 chr3 20266733 20266828 -197770330 + MIR SINE MIR 52 146 -62 209 206 43 11 chr3 20266916 20267008 -197770150 + CT-rich Low_complexity Low_complexity 1 95 0 305 190 0 0 chr3 20267158 20267216 -197769942 + MLT1F1 LTR MaLR 234 291 -251 421 243 7 59 chr3 20267260 20267396 -197769762 + MLT1F1 LTR MaLR 430 558 -9 598 286 101 42 chr3 20268047 20268501 -197768657 + L2 LINE L2 2828 3308 -5 273 29 0 0 chr3 20268799 20268833 -197768325 + (TG)n Simple_repeat Simple_repeat 2 35 0 363 360 79 6 chr3 20269041 20269219 -197767939 - MIR SINE MIR -70 192 2 245 289 52 10 chr3 20269358 20269455 -197767703 - MIR SINE MIR -161 101 1 369 0 0 0 chr3 20270213 20270254 -197766904 + (TG)n Simple_repeat Simple_repeat 2 42 0 374 299 112 0 chr3 20270345 20270452 -197766706 - L2 LINE L2 -14 3299 3181 309 386 45 43 chr3 20272079 20272632 -197764526 - L3 LINE CR1 -2 1575 965 207 254 15 15 chr3 20272980 20273047 -197764111 - MIR SINE MIR -63 145 79 537 273 50 0 chr3 20273158 20273297 -197763861 - MIR SINE MIR -88 174 29 252 310 5 49 chr3 20274468 20274652 -197762506 + GA-rich Low_complexity Low_complexity 5 180 0 547 331 95 21 chr3 20276547 20276789 -197760369 - MIR SINE MIR 0 262 3 437 249 190 51 chr3 20276888 20277241 -197759917 + L2 LINE L2 2870 3271 -1 201 260 0 62 chr3 20277502 20277598 -197759560 + (CGGGG)n Simple_repeat Simple_repeat 5 94 0 1183 282 231 7 chr3 20277920 20278923 -197758235 - L2 LINE L2 0 3313 2036 212 314 58 39 chr3 20279477 20279633 -197757525 - L2 LINE L2 -165 3107 2949 289 323 44 13 chr3 20279912 20280070 -197757088 - MIR3 SINE MIR -39 169 7 248 293 0 0 chr3 20280252 20280310 -197756848 - L3 LINE CR1 -106 1471 1414 779 275 25 21 chr3 20280317 20280553 -197756605 - MIR SINE MIR -10 252 16 197 300 23 32 chr3 20281605 20281713 -197755445 - MIR3 SINE MIR -46 162 54 226 351 61 8 chr3 20281857 20281988 -197755170 - MIR3 SINE MIR -56 152 15 518 241 63 46 chr3 20283930 20284104 -197753054 + MER5A DNA MER1_type 13 189 0 330 278 9 19 chr3 20284749 20284857 -197752301 + GA-rich Low_complexity Low_complexity 5 111 0 230 281 12 24 chr3 20285421 20285503 -197751655 - MIR SINE MIR -117 145 65 839 182 0 11 chr3 20286195 20286371 -197750787 + (TGGA)n Simple_repeat Simple_repeat 2 175 0 1089 105 0 0 chr3 20286402 20286564 -197750594 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 903 191 0 0 chr3 20286595 20287005 -197750153 + (TGGA)n Simple_repeat Simple_repeat 1 410 0 201 180 40 20 chr3 20287246 20287296 -197749862 + MIR SINE MIR 77 127 -135 345 266 18 18 chr3 20288305 20288418 -197748740 + MIR SINE MIR 24 136 -72 282 352 84 60 chr3 20288435 20288685 -197748473 - MIR SINE MIR 0 262 7 1047 173 4 0 chr3 20289102 20289618 -197747540 + (TGGA)n Simple_repeat Simple_repeat 1 518 0 372 251 123 57 chr3 20290559 20290770 -197746388 + MLT1J LTR MaLR 229 453 -58 1791 244 91 33 chr3 20290776 20291293 -197745865 + MLT1H LTR MaLR 2 548 -1 303 283 51 43 chr3 20291313 20291451 -197745707 - MIR SINE MIR -16 246 108 2277 68 7 3 chr3 20291457 20291749 -197745409 + AluY SINE Alu 1 293 -18 411 298 140 14 chr3 20291756 20292002 -197745156 + L1MCa LINE L1 1040 3291 -1283 519 212 0 18 chr3 20292252 20292365 -197744793 + MLT1J LTR MaLR 79 189 -322 2924 167 8 14 chr3 20292391 20292883 -197744275 + L1MB3 LINE L1 5692 6180 -3 1567 100 38 128 chr3 20292891 20293240 -197743918 + AluYb8 SINE Alu 1 320 0 907 287 149 12 chr3 20293796 20294306 -197742852 + L2 LINE L2 2737 3309 -4 182 216 29 137 chr3 20294659 20294761 -197742397 - MIR SINE MIR -59 149 59 181 349 75 7 chr3 20294943 20295089 -197742069 + L3 LINE CR1 1207 1362 -215 444 333 44 7 chr3 20295259 20295394 -197741764 + MIR3 SINE MIR 16 155 -53 670 268 155 16 chr3 20296142 20296523 -197740635 + LTR16A1 LTR ERVL 22 455 -2 1969 117 17 82 chr3 20296649 20296852 -197740306 + Tigger2 DNA MER2_type 2334 2549 -169 2234 117 0 0 chr3 20296852 20297160 -197739998 + AluSg SINE Alu 1 308 -2 1969 117 17 82 chr3 20297160 20297185 -197739973 + Tigger2 DNA MER2_type 2549 2574 -144 2186 99 0 3 chr3 20297185 20297479 -197739679 + AluSp SINE Alu 1 293 -20 1969 117 17 82 chr3 20297479 20297661 -197739497 + Tigger2 DNA MER2_type 2574 2718 0 419 355 60 21 chr3 20297696 20297930 -197739228 + L1ME2 LINE L1 5078 5320 -826 1305 146 131 44 chr3 20297939 20298214 -197738944 + AluJb SINE Alu 1 299 -13 381 353 94 63 chr3 20298328 20298849 -197738309 + L1ME2 LINE L1 5537 5919 -243 182 333 18 0 chr3 20299288 20299345 -197737813 + MIR SINE MIR 94 151 -111 7507 40 6 0 chr3 20299514 20300900 -197736258 + L1PA5 LINE L1 4765 6154 0 301 320 92 45 chr3 20300903 20300927 -197736231 + L1M4 LINE L1 4145 4166 -1980 2143 105 3 19 chr3 20300927 20301242 -197735916 + AluSg SINE Alu 1 310 0 301 320 92 45 chr3 20301242 20301935 -197735223 + L1M4 LINE L1 4166 4896 -1250 1355 199 29 0 chr3 20302064 20302336 -197734822 + AluJo SINE Alu 21 300 -12 445 235 101 8 chr3 20302398 20302517 -197734641 + L2 LINE L2 3180 3309 -4 281 352 62 6 chr3 20302709 20302885 -197734273 - L3 LINE CR1 -59 1518 1333 414 195 21 42 chr3 20303114 20303222 -197733936 + L1MA4A LINE L1 6044 6279 -7 2368 82 0 13 chr3 20303222 20303539 -197733619 + AluSq SINE Alu 1 313 0 429 261 34 0 chr3 20304189 20304308 -197732850 + MIR3 SINE MIR 35 157 -51 182 323 194 8 chr3 20304817 20304941 -197732217 + L2 LINE L2 2905 3051 -221 2210 112 3 3 chr3 20305092 20305404 -197731754 - AluSx SINE Alu 0 312 1 2361 80 0 0 chr3 20305770 20306072 -197731086 - AluSx SINE Alu 0 312 11 848 152 0 0 chr3 20306085 20306217 -197730941 - FLAM_C SINE Alu -10 133 2 2210 103 6 3 chr3 20306281 20306593 -197730565 - AluSq SINE Alu 0 313 1 1417 235 162 3 chr3 20306593 20307172 -197729986 - Charlie1 DNA MER1_type -795 1966 1 262 255 41 20 chr3 20307183 20307281 -197729877 + L2 LINE L2 3171 3270 -43 510 313 170 12 chr3 20307423 20307765 -197729393 - L2 LINE L2 -3 3310 2915 330 185 155 55 chr3 20307857 20308057 -197729101 - L2 LINE L2 -100 3213 2994 314 245 78 10 chr3 20308067 20308169 -197728989 - MIR SINE MIR -113 149 41 462 230 20 0 chr3 20308329 20308429 -197728729 - MIR SINE MIR -77 185 84 2291 163 16 69 chr3 20308534 20308598 -197728560 - L1MB7 LINE L1 0 6184 6118 2860 82 3 8 chr3 20308598 20308964 -197728194 + THE1B LTR MaLR 1 364 0 2291 163 16 69 chr3 20308964 20309389 -197727769 - L1MB7 LINE L1 -66 6118 5721 251 278 55 46 chr3 20310226 20310335 -197726823 - MIR3 SINE MIR -51 157 47 478 247 50 21 chr3 20310451 20310646 -197726512 - MIR SINE MIR -15 247 46 431 258 153 59 chr3 20311253 20311678 -197725480 + L2 LINE L2 2632 3101 -212 352 329 75 62 chr3 20311864 20312186 -197724972 + L2 LINE L2 2927 3252 -20 219 377 24 12 chr3 20312204 20312371 -197724787 - MIR SINE MIR -44 218 50 294 280 43 0 chr3 20312480 20312573 -197724585 + MIR SINE MIR 67 163 -99 1842 160 0 0 chr3 20313641 20313951 -197723207 + AluJo SINE Alu 1 310 0 50 18 0 0 chr3 20313951 20314008 -197723150 + AT_rich Low_complexity Low_complexity 1 57 0 1437 172 56 12 chr3 20314008 20314327 -197722831 + L1MB3 LINE L1 5851 6183 0 267 317 24 37 chr3 20314350 20314514 -197722644 + L1MC/D LINE L1 5619 5780 -341 1141 173 9 9 chr3 20314516 20314730 -197722428 + AluJb SINE Alu 83 296 -16 241 279 86 36 chr3 20314733 20314873 -197722285 + L1MC/D LINE L1 5776 5922 -1886 255 331 30 24 chr3 20315752 20315918 -197721240 - MIR SINE MIR -78 184 18 199 255 0 0 chr3 20316272 20316319 -197720839 - MIR SINE MIR -72 136 90 202 240 0 125 chr3 20317088 20317140 -197720018 - MIR SINE MIR -69 193 157 2347 90 0 0 chr3 20317140 20317439 -197719719 - AluSg SINE Alu -11 299 1 202 240 0 125 chr3 20317439 20317482 -197719676 - MIR SINE MIR -105 157 110 1205 186 237 17 chr3 20317712 20318062 -197719096 + MLT1H LTR MaLR 64 490 -59 2334 256 33 17 chr3 20318075 20318547 -197718611 + L1M4 LINE L1 4335 4825 -1321 2157 106 10 10 chr3 20318547 20318859 -197718299 + AluSq SINE Alu 1 312 -1 2334 256 33 17 chr3 20318859 20319148 -197718010 + L1M4 LINE L1 4825 5108 -1038 537 201 67 0 chr3 20319146 20319280 -197717878 + L1ME3 LINE L1 4686 4828 -1318 * 804 115 0 0 chr3 20319285 20319398 -197717760 + AluSq/x SINE Alu 1 113 -200 1687 257 97 19 chr3 20319520 20320243 -197716915 + L1ME3 LINE L1 5170 5951 -211 2121 122 0 0 chr3 20320247 20320543 -197716615 + AluSx SINE Alu 1 296 -16 850 147 0 0 chr3 20320564 20320700 -197716458 + FLAM_C SINE Alu 1 136 -7 642 274 33 9 chr3 20320702 20320917 -197716241 + L1ME3 LINE L1 5941 6160 -2 311 331 41 58 chr3 20320988 20321230 -197715928 + L1MC4 LINE L1 7596 7833 -209 1723 167 10 3 chr3 20322468 20322773 -197714385 - Tigger3b DNA MER2_type 0 1231 925 2611 153 91 53 chr3 20322780 20323362 -197713796 - MER4B LTR ERV1 -6 604 1 * 3502 114 42 91 chr3 20323362 20323700 -197713458 - Tigger3b DNA MER2_type -2100 928 575 2163 111 10 0 chr3 20323700 20324007 -197713151 - AluSx SINE Alu -2 310 1 3502 114 42 91 chr3 20324007 20324064 -197713094 - Tigger3b DNA MER2_type -2453 575 517 1851 133 6 41 chr3 20324064 20324380 -197712778 + AluSx SINE Alu 1 305 -7 3502 114 42 91 chr3 20324380 20324391 -197712767 - Tigger3b DNA MER2_type -2511 517 507 2271 95 0 0 chr3 20324391 20324697 -197712461 + AluSg SINE Alu 2 307 -3 3502 114 42 91 chr3 20324697 20325050 -197712108 - Tigger3b DNA MER2_type -2521 507 205 1078 116 0 52 chr3 20325054 20325250 -197711908 - AluSp SINE Alu 0 310 124 707 168 162 52 chr3 20325250 20325423 -197711735 - Tigger3b DNA MER2_type -1039 192 1 264 313 12 0 chr3 20325920 20326003 -197711155 + L2 LINE L2 2240 2323 -991 328 284 11 0 chr3 20326647 20326742 -197710416 + Charlie8 DNA MER1_type 63 158 -2259 300 211 0 0 chr3 20327122 20327179 -197709979 - Tigger3b DNA MER2_type -1173 58 2 538 309 28 11 chr3 20327475 20327653 -197709505 + MIR SINE MIR 70 250 -12 447 244 69 15 chr3 20328124 20328255 -197708903 - MIR SINE MIR -66 196 59 456 302 27 7 chr3 20328804 20328953 -197708205 - MIR SINE MIR -87 175 24 359 204 45 11 chr3 20329252 20329340 -197707818 + MLT1H LTR MaLR 116 206 -343 528 267 59 7 chr3 20329804 20329939 -197707219 + MLT1H LTR MaLR 209 350 -199 451 225 139 43 chr3 20330318 20330505 -197706653 + L2 LINE L2 3108 3312 -1 261 311 25 0 chr3 20330721 20330840 -197706318 + L1ME3A LINE L1 5729 5850 -314 539 235 162 11 chr3 20330843 20331022 -197706136 + L1ME3A LINE L1 5916 6121 -49 575 333 13 10 chr3 20331087 20331349 -197705809 + L1MC4a LINE L1 5666 5817 -345 1021 209 26 17 chr3 20331387 20331617 -197705541 + Charlie1 DNA MER1_type 1 232 -2529 3364 197 57 27 chr3 20331624 20331806 -197705352 + L1MB7 LINE L1 5382 5557 -627 2259 98 0 0 chr3 20331806 20332102 -197705056 - AluSp SINE Alu -17 296 1 3364 197 57 27 chr3 20332102 20332689 -197704469 + L1MB7 LINE L1 5557 6174 -10 776 231 174 22 chr3 20333290 20333635 -197703523 + L2 LINE L2 2684 2975 -338 2326 63 0 17 chr3 20333635 20333936 -197703222 - AluSx SINE Alu -11 301 6 776 231 174 22 chr3 20333936 20334139 -197703019 + L2 LINE L2 2975 3313 0 195 147 0 0 chr3 20334272 20334306 -197702852 + L2 LINE L2 3016 3049 -223 381 245 71 20 chr3 20335652 20335750 -197701408 + MIR SINE MIR 112 214 -48 242 244 185 67 chr3 20335824 20335959 -197701199 - L2 LINE L2 -9 3263 3113 227 362 161 0 chr3 20336768 20336917 -197700241 - MIR SINE MIR -34 228 56 2099 92 34 0 chr3 20336960 20337255 -197699903 - AluSq SINE Alu -8 305 1 451 313 50 72 chr3 20337274 20337690 -197699468 - L2 LINE L2 -24 3248 2842 200 297 53 42 chr3 20338356 20338503 -197698655 + MIR SINE MIR 5 141 -67 366 243 47 47 chr3 20338700 20338848 -197698310 + Charlie8 DNA MER1_type 73 220 -2197 210 143 0 0 chr3 20339656 20339691 -197697467 + (TCC)n Simple_repeat Simple_repeat 2 36 0 250 336 30 71 chr3 20341946 20342214 -197694944 - L2 LINE L2 -26 3287 3031 309 262 168 16 chr3 20342470 20342661 -197694497 - L2 LINE L2 -731 2583 2364 1579 184 36 0 chr3 20342898 20343176 -197693982 - AluJo SINE Alu -11 301 14 1089 174 14 33 chr3 20343287 20343557 -197693601 + AluSq SINE Alu 18 283 -26 303 28 0 0 chr3 20343557 20343593 -197693565 + (CA)n Simple_repeat Simple_repeat 1 36 0 1927 112 34 7 chr3 20343601 20343896 -197693262 + AluSq SINE Alu 1 303 -10 3764 164 39 70 chr3 20343897 20344015 -197693143 - L1MB2 LINE L1 -29 6142 6022 2224 109 3 0 chr3 20344015 20344326 -197692832 - AluSx SINE Alu 0 312 1 3764 164 39 70 chr3 20344326 20344971 -197692187 - L1MB2 LINE L1 -149 6022 5436 1904 127 0 40 chr3 20344971 20345295 -197691863 - AluSx SINE Alu -1 311 1 3764 164 39 70 chr3 20345295 20345727 -197691431 - L1MB2 LINE L1 -735 5436 4992 605 253 157 64 chr3 20346535 20346943 -197690215 + LTR33A LTR ERVL 77 522 -1 1822 119 72 0 chr3 20346973 20347251 -197689907 - AluSx SINE Alu -14 298 1 298 375 7 21 chr3 20347674 20347818 -197689340 - MIR3 SINE MIR -25 183 42 363 252 29 10 chr3 20348132 20348235 -197688923 + MIR SINE MIR 21 125 -83 916 153 32 32 chr3 20348267 20348456 -197688702 + MER53 DNA DNA 1 189 0 490 264 21 14 chr3 20348496 20348636 -197688522 + MIR3 SINE MIR 3 143 -65 1661 130 69 11 chr3 20348702 20348978 -197688180 + AluJb SINE Alu 1 292 -20 260 203 368 15 chr3 20349608 20349741 -197687417 + MLT1K LTR MaLR 387 566 -22 279 271 10 42 chr3 20350511 20350607 -197686551 + MIR SINE MIR 109 201 -61 2018 119 7 0 chr3 20350704 20350997 -197686161 - AluSp SINE Alu -18 295 1 1815 168 3 16 chr3 20350997 20351300 -197685858 - AluJo SINE Alu -11 301 3 1447 155 86 52 chr3 20354422 20354713 -197682445 + AluJo SINE Alu 3 303 -9 960 206 6 0 chr3 20355156 20355326 -197681832 + AluJb SINE Alu 137 307 -5 238 138 17 0 chr3 20355459 20355517 -197681641 - L1MB3 LINE L1 0 6183 6125 304 81 0 86 chr3 20355522 20355580 -197681578 - L1MA9 LINE L1 -244 6047 5995 3394 154 42 32 chr3 20355587 20355799 -197681359 - L1MB3 LINE L1 -50 6133 5925 2575 82 0 0 chr3 20355799 20356105 -197681053 + AluSg SINE Alu 1 306 -4 3394 154 42 32 chr3 20356105 20356407 -197680751 - L1MB3 LINE L1 -258 5925 5608 2232 102 24 0 chr3 20356407 20356701 -197680457 - AluSq SINE Alu -12 301 1 3394 154 42 32 chr3 20356701 20356901 -197680257 - L1MB3 LINE L1 -575 5608 5411 808 223 153 89 chr3 20356901 20357012 -197680146 + MLT1H LTR MaLR 49 151 -398 3003 108 101 41 chr3 20357012 20357128 -197680030 + MER4A LTR ERV1 1 109 -491 2221 119 0 0 chr3 20357128 20357446 -197679712 - AluSx SINE Alu 0 318 1 3003 108 101 41 chr3 20357446 20357889 -197679269 + MER4A LTR ERV1 109 596 -4 808 223 153 89 chr3 20357889 20358248 -197678910 + MLT1H LTR MaLR 151 549 0 2499 87 0 6 chr3 20358415 20358726 -197678432 - AluY SINE Alu -2 309 1 2652 59 0 0 chr3 20358998 20359304 -197677854 - AluY SINE Alu -5 306 1 2176 107 17 0 chr3 20359304 20359594 -197677564 - AluSg SINE Alu -15 295 1 651 216 36 30 chr3 20359714 20359881 -197677277 - LTR38 LTR ERV1 -386 170 3 355 258 39 77 chr3 20360187 20360369 -197676789 + MIR SINE MIR 88 262 0 930 209 35 99 chr3 20360449 20360640 -197676518 - L1ME3 LINE L1 -100 6062 5860 785 173 0 37 chr3 20360640 20360802 -197676356 + FRAM SINE Alu 1 156 -10 930 209 35 99 chr3 20360802 20360931 -197676227 - L1ME3 LINE L1 -302 5860 5766 2247 89 0 0 chr3 20360931 20361245 -197675913 - AluSg SINE Alu 0 314 1 930 209 35 99 chr3 20361245 20361296 -197675862 - L1ME3 LINE L1 -396 5766 5713 1409 236 17 19 chr3 20361313 20361724 -197675434 - MER66A LTR ERV1 -40 438 29 400 243 130 8 chr3 20361749 20361893 -197675265 - L1ME3 LINE L1 -483 5681 5537 554 112 0 34 chr3 20361895 20361984 -197675174 + AluS SINE Alu 2 87 -226 820 204 79 5 chr3 20361985 20362201 -197674957 - L1ME3 LINE L1 -616 5548 5317 1571 136 0 118 chr3 20362204 20362407 -197674751 - AluJb SINE Alu -2 300 151 2119 116 14 3 chr3 20362407 20362699 -197674459 - AluSq SINE Alu -18 295 1 1571 136 0 118 chr3 20362699 20362834 -197674324 - AluJb SINE Alu -151 151 2 1492 213 133 75 chr3 20362836 20362898 -197674260 - L1ME LINE L1 -689 5477 5420 2398 100 6 0 chr3 20362898 20363209 -197673949 - AluSq SINE Alu 0 313 1 1492 213 133 75 chr3 20363209 20363269 -197673889 - L1ME LINE L1 -746 5420 5365 1474 82 77 0 chr3 20363269 20363428 -197673730 - AluY SINE Alu -17 294 116 612 0 0 0 chr3 20363428 20363496 -197673662 + (TTTTA)n Simple_repeat Simple_repeat 2 69 0 1474 82 77 0 chr3 20363496 20363532 -197673626 - AluY SINE Alu -195 116 84 1492 213 133 75 chr3 20363532 20363587 -197673571 - L1ME LINE L1 -801 5365 5315 1660 183 3 29 chr3 20363587 20363893 -197673265 - AluJb SINE Alu -2 310 13 1492 213 133 75 chr3 20363893 20364121 -197673037 - L1ME LINE L1 -851 5315 5102 2093 105 0 41 chr3 20364121 20364455 -197672703 + AluSx SINE Alu 1 312 0 1492 213 133 75 chr3 20364455 20364693 -197672465 - L1ME LINE L1 -1064 5102 4879 1803 132 0 0 chr3 20364693 20364943 -197672215 - AluSq SINE Alu 0 313 64 1492 213 133 75 chr3 20364943 20365021 -197672137 - L1ME LINE L1 -1287 4879 4807 1900 151 13 10 chr3 20365021 20365319 -197671839 + AluJb SINE Alu 1 299 -13 1492 213 133 75 chr3 20365319 20365432 -197671726 - L1ME LINE L1 -1359 4807 4535 2308 100 3 17 chr3 20365436 20365736 -197671422 + AluSp SINE Alu 3 298 -15 4096 125 19 126 chr3 20365746 20367293 -197669865 + pTR5 LTR ERV1 742 2606 0 2776 234 60 65 chr3 20367294 20367343 -197669815 - L1ME LINE L1 -1613 4533 4485 2431 85 0 16 chr3 20367343 20367659 -197669499 + AluY SINE Alu 1 311 0 2776 234 60 65 chr3 20367659 20368273 -197668885 - L1ME LINE L1 -1661 4485 3869 2270 123 7 0 chr3 20368273 20368575 -197668583 - AluSx SINE Alu -8 304 1 2776 234 60 65 chr3 20368575 20368644 -197668514 - L1ME LINE L1 -2277 3869 3801 2311 114 0 0 chr3 20368644 20368943 -197668215 - AluSx SINE Alu -13 299 1 2776 234 60 65 chr3 20368943 20369104 -197668054 - L1ME LINE L1 -2345 3801 3641 812 165 0 0 chr3 20369104 20369237 -197667921 + FLAM_A SINE Alu 1 133 0 2776 234 60 65 chr3 20369237 20369455 -197667703 - L1ME LINE L1 -2505 3641 3424 2451 70 0 10 chr3 20369455 20369756 -197667402 - AluY SINE Alu -13 298 1 2776 234 60 65 chr3 20369756 20369834 -197667324 - L1ME LINE L1 -2722 3424 3347 590 256 38 101 chr3 20369823 20370090 -197667068 + L1M4 LINE L1 2524 2806 -3340 * 3280 68 11 7 chr3 20370090 20370532 -197666626 + MLT2A1 LTR ERVL 1 444 0 590 256 38 101 chr3 20370532 20370565 -197666593 + L1M4 LINE L1 2806 2840 -3306 2176 131 0 10 chr3 20370565 20370902 -197666256 - AluSx SINE Alu 0 312 1 590 256 38 101 chr3 20370902 20370942 -197666216 + L1M4 LINE L1 2840 2881 -3265 3849 123 28 35 chr3 20370942 20371591 -197665567 + L1MB3 LINE L1 5477 6129 -54 2141 103 0 60 chr3 20371591 20371910 -197665248 + AluSq SINE Alu 1 300 -13 948 211 0 0 chr3 20371919 20372090 -197665068 + FAM SINE Alu 1 171 -4 3849 123 28 35 chr3 20372090 20372140 -197665018 + L1MB3 LINE L1 6137 6181 -2 590 256 38 101 chr3 20372140 20372321 -197664837 + L1M4 LINE L1 2881 3014 -3132 1348 207 21 153 chr3 20372325 20372750 -197664408 + MLT2B1 LTR ERVL 5 373 -41 1538 180 55 3 chr3 20372780 20373069 -197664089 - MER7A DNA MER2_type -43 303 2 328 93 17 2 chr3 20373069 20373126 -197664032 + MLT2C2 LTR ERVL 415 464 0 301 328 132 49 chr3 20373283 20373487 -197663671 + L3 LINE CR1 1263 1483 -94 2236 115 3 3 chr3 20373565 20373861 -197663297 + AluSq SINE Alu 1 296 -17 198 71 0 0 chr3 20373898 20373926 -197663232 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1472 122 14 5 chr3 20374091 20374304 -197662854 - AluSq SINE Alu -29 284 70 1142 220 20 3 chr3 20374480 20374813 -197662345 - L1MC/D LINE L1 -745 5401 5186 246 327 65 24 chr3 20374844 20375012 -197662146 + MIR SINE MIR 81 255 -7 253 294 103 24 chr3 20375881 20376007 -197661151 - Charlie8 DNA MER1_type -2261 156 21 254 235 12 0 chr3 20377664 20377745 -197659413 + (TG)n Simple_repeat Simple_repeat 2 83 0 402 216 43 35 chr3 20378081 20378197 -197658961 - MER103 DNA DNA -19 147 31 357 221 0 0 chr3 20378615 20378683 -197658475 + L1MC4 LINE L1 6636 6703 -1339 336 348 0 0 chr3 20378648 20378737 -197658421 - L1MC4 LINE L1 -1340 6702 6614 * 8222 52 4 25 chr3 20378747 20379403 -197657755 + HUERS-P1 LTR ERV1 5182 5806 -457 2162 130 3 0 chr3 20379403 20379725 -197657433 + AluSx SINE Alu 1 312 0 8222 52 4 25 chr3 20379725 20380174 -197656984 + HUERS-P1 LTR ERV1 5806 6263 0 5105 69 18 7 chr3 20380174 20380858 -197656300 + LTR8 LTR ERV1 1 691 0 1068 74 7 0 chr3 20380858 20381006 -197656152 - MER41B LTR ERV1 -486 149 1 1133 234 69 15 chr3 20381009 20381343 -197655815 + LTR48B LTR ERV1 293 644 0 817 244 71 10 chr3 20381343 20381623 -197655535 - MER46C DNA MER2_type -40 298 1 431 271 46 7 chr3 20381691 20381842 -197655316 + MER112 DNA MER1_type 2 158 -102 246 214 54 0 chr3 20381845 20381901 -197655257 - MIR SINE MIR -18 244 186 2802 148 3 61 chr3 20381917 20381969 -197655189 + L1M4 LINE L1 5281 5334 -850 2524 73 3 0 chr3 20381969 20382272 -197654886 + AluSp SINE Alu 1 304 -9 2802 148 3 61 chr3 20382272 20382283 -197654875 + L1M4 LINE L1 5334 5344 -840 2083 139 0 19 chr3 20382283 20382599 -197654559 + AluSx SINE Alu 1 310 -2 2802 148 3 61 chr3 20382599 20383109 -197654049 + L1M4 LINE L1 5344 5822 -362 1604 150 81 0 chr3 20383111 20383358 -197653800 + AluJo SINE Alu 1 267 -45 22 35 0 0 chr3 20383513 20383542 -197653616 + AT_rich Low_complexity Low_complexity 1 29 0 274 246 0 0 chr3 20383618 20383675 -197653483 - LTR33A LTR ERVL 0 523 467 241 315 94 7 chr3 20383881 20384030 -197653128 - LTR33A LTR ERVL -361 162 1 2163 121 0 3 chr3 20384197 20384502 -197652656 - AluSg1 SINE Alu -5 304 1 381 288 71 43 chr3 20384534 20384718 -197652440 + L1ME4a LINE L1 5926 6114 -7 2405 97 3 0 chr3 20384791 20385102 -197652056 + AluSp SINE Alu 1 312 -1 2239 100 0 19 chr3 20385437 20385747 -197651411 - AluSx SINE Alu -8 304 1 2261 97 10 0 chr3 20386046 20386334 -197650824 - AluSp SINE Alu -22 291 1 1253 246 36 25 chr3 20386355 20386562 -197650596 + MER97c DNA MER1_type? 324 538 -552 2187 115 23 0 chr3 20386562 20386867 -197650291 + AluSp SINE Alu 1 312 -1 1253 246 36 25 chr3 20386867 20387021 -197650137 + MER97c DNA MER1_type? 538 689 -401 211 304 14 0 chr3 20387602 20387671 -197649487 + C-rich Low_complexity Low_complexity 3 72 0 250 318 0 19 chr3 20388066 20388173 -197648985 + CT-rich Low_complexity Low_complexity 4 108 0 347 242 6 0 chr3 20388176 20388354 -197648804 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 344 253 0 20 chr3 20388359 20388458 -197648700 + CT-rich Low_complexity Low_complexity 4 100 0 253 313 130 0 chr3 20388460 20388575 -197648583 - L2 LINE L2 0 3272 3143 307 273 58 36 chr3 20388614 20388753 -197648405 - L2 LINE L2 -237 3035 2894 252 213 33 0 chr3 20389075 20389136 -197648022 + MIR SINE MIR 91 153 -109 295 215 193 44 chr3 20389286 20389421 -197647737 - Charlie8 DNA MER1_type -2180 237 83 3126 125 7 22 chr3 20389646 20390183 -197646975 + L1MB3 LINE L1 5655 6183 0 458 367 75 7 chr3 20390484 20390542 -197646616 - L1M4 LINE L1 -2136 4010 3957 2343 117 3 0 chr3 20390542 20390851 -197646307 - AluSx SINE Alu -2 310 1 458 367 75 7 chr3 20390851 20391097 -197646061 - L1M4 LINE L1 -2189 3957 3685 495 203 93 0 chr3 20392677 20392795 -197644363 - LTR16C LTR ERVL -18 473 345 815 203 14 0 chr3 20392796 20392944 -197644214 + FRAM SINE Alu 1 150 -26 287 306 61 0 chr3 20392948 20393046 -197644112 - LTR16C LTR ERVL -134 357 254 1283 297 58 51 chr3 20393364 20393512 -197643646 - L1ME3A LINE L1 -48 6122 5977 2371 97 0 0 chr3 20393512 20393810 -197643348 - AluSg SINE Alu -12 298 1 1283 297 58 51 chr3 20393810 20394331 -197642827 - L1ME3A LINE L1 -193 5977 5448 227 324 68 10 chr3 20394363 20394468 -197642690 - MIR SINE MIR -66 142 40 291 304 96 9 chr3 20395270 20395385 -197641773 - MIR3 SINE MIR -73 135 11 434 334 14 70 chr3 20395532 20395876 -197641282 - L2 LINE L2 -34 3238 2914 887 263 122 72 chr3 20396110 20396807 -197640351 + L1ME3 LINE L1 5293 6032 -130 249 233 41 14 chr3 20397357 20397430 -197639728 + MLT1K LTR MaLR 152 226 -362 404 266 57 13 chr3 20397522 20397680 -197639478 + MLT1K LTR MaLR 418 582 -6 252 59 0 0 chr3 20397726 20397760 -197639398 + (TG)n Simple_repeat Simple_repeat 1 34 0 346 271 54 42 chr3 20398065 20398231 -197638927 - MIR SINE MIR -18 244 77 389 323 23 0 chr3 20398326 20398456 -197638702 + L2 LINE L2 3134 3266 -6 * 799 244 103 4 chr3 20398454 20398688 -197638470 - MIR SINE MIR 0 262 6 852 254 148 51 chr3 20399966 20400359 -197636799 - LTR16B LTR ERVL -33 431 1 476 177 10 0 chr3 20400998 20401094 -197636064 - AluJ/FRAM SINE Alu 0 312 216 1542 81 49 0 chr3 20401128 20401353 -197635805 - LTR10A LTR ERV1 0 609 326 2101 116 26 26 chr3 20401553 20401864 -197635294 + AluSx SINE Alu 1 311 -1 231 250 0 0 chr3 20401996 20402048 -197635110 - MIR SINE MIR -59 149 98 197 158 26 0 chr3 20402118 20402156 -197635002 + MIR SINE MIR 79 117 -91 413 280 63 14 chr3 20402684 20402827 -197634331 + MIR SINE MIR 113 262 0 827 264 60 37 chr3 20403068 20403450 -197633708 - MLT1K LTR MaLR -32 556 166 234 313 52 0 chr3 20403843 20403958 -197633200 - MLT1J LTR MaLR -292 219 99 677 267 87 42 chr3 20404276 20404564 -197632594 - MER115 DNA AcHobo -331 362 62 388 293 0 64 chr3 20404576 20404716 -197632442 - MER5B DNA MER1_type -2 176 46 212 286 0 0 chr3 20404750 20404799 -197632359 - MER5B DNA MER1_type -129 49 1 535 260 210 5 chr3 20405314 20405514 -197631644 - MIR SINE MIR 0 262 22 628 266 10 69 chr3 20406070 20406123 -197631035 - MIR SINE MIR -2 260 205 2377 139 3 8 chr3 20406123 20406491 -197630667 + MER47A DNA MER2_type 1 366 0 628 266 10 69 chr3 20406491 20406640 -197630518 - MIR SINE MIR -57 205 70 583 268 98 21 chr3 20406681 20406916 -197630242 - L2 LINE L2 -146 3167 2915 257 231 22 45 chr3 20407274 20407408 -197629750 + (CAGAGA)n Simple_repeat Simple_repeat 2 132 0 24 53 0 0 chr3 20407865 20407903 -197629255 + GC_rich Low_complexity Low_complexity 1 38 0 198 71 0 0 chr3 20408029 20408057 -197629101 + (CGGA)n Simple_repeat Simple_repeat 3 30 0 184 229 0 0 chr3 20409516 20409551 -197627607 + MIR SINE MIR 112 146 -62 612 243 108 46 chr3 20409690 20409995 -197627163 + MER102b DNA MER1_type 3 326 -15 227 340 120 40 chr3 20410246 20410446 -197626712 - MIR SINE MIR -34 228 13 653 82 0 0 chr3 20410622 20410707 -197626451 - AluSc SINE Alu -224 85 1 1587 134 25 0 chr3 20410712 20410951 -197626207 - AluJo SINE Alu -12 300 56 572 304 95 3 chr3 20410973 20411256 -197625902 - L2 LINE L2 -548 2766 2458 249 305 57 0 chr3 20411842 20411947 -197625211 - L2 LINE L2 -157 3115 3005 272 274 29 10 chr3 20412231 20412333 -197624825 - MIR SINE MIR -79 129 26 217 301 27 14 chr3 20412942 20413015 -197624143 + MIR SINE MIR 118 191 -71 409 272 20 104 chr3 20413761 20413810 -197623348 + MER113 DNA MER1_type? 75 127 -394 2207 117 3 0 chr3 20413810 20414119 -197623039 - AluSx SINE Alu -2 310 1 409 272 20 104 chr3 20414119 20414310 -197622848 + MER113 DNA MER1_type? 127 288 -233 2443 77 0 0 chr3 20414310 20414620 -197622538 - AluY SINE Alu 0 311 2 409 272 20 104 chr3 20414620 20414676 -197622482 + MER113 DNA MER1_type? 288 347 -174 777 191 60 165 chr3 20415004 20415422 -197621736 - MLT1A2 LTR MaLR 0 374 1 752 236 188 6 chr3 20416239 20416591 -197620567 - MLT1K LTR MaLR -7 581 166 222 321 73 32 chr3 20416637 20416786 -197620372 - MIR SINE MIR -63 145 18 333 245 29 36 chr3 20417082 20417221 -197619937 + (TCTCTG)n Simple_repeat Simple_repeat 4 141 0 755 218 0 0 chr3 20417500 20417679 -197619479 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 584 318 96 21 chr3 20418066 20418450 -197618708 - MLT1K LTR MaLR -7 581 169 878 169 14 0 chr3 20419675 20419823 -197617335 - FRAM SINE Alu -5 171 22 382 373 133 15 chr3 20420294 20420699 -197616459 + L2 LINE L2 2818 3270 -2 403 199 35 99 chr3 20420718 20420859 -197616299 + MIR SINE MIR 38 169 -93 2448 186 35 16 chr3 20421189 20421220 -197615938 - L1MB3 LINE L1 -5 6178 6149 1961 122 31 0 chr3 20421220 20421514 -197615644 - AluSg SINE Alu -7 303 1 2448 186 35 16 chr3 20421514 20421971 -197615187 - L1MB3 LINE L1 -34 6149 5681 391 286 84 28 chr3 20422124 20422514 -197614644 + LTR16A1 LTR ERVL 12 457 0 21 0 0 0 chr3 20423264 20423285 -197613873 + AT_rich Low_complexity Low_complexity 1 21 0 290 291 158 25 chr3 20423325 20423483 -197613675 - MER53 DNA DNA -2 187 9 744 172 0 0 chr3 20424347 20424463 -197612695 + FLAM_C SINE Alu 1 116 -27 245 290 99 56 chr3 20425153 20425315 -197611843 - L3 LINE CR1 -59 1518 1350 429 299 46 23 chr3 20425600 20425774 -197611384 - Charlie8 DNA MER1_type -2236 181 4 1841 140 0 0 chr3 20426253 20426525 -197610633 - AluSx SINE Alu -20 292 21 296 216 54 0 chr3 20426556 20426630 -197610528 - L2 LINE L2 -776 2538 2461 546 269 11 11 chr3 20427076 20427258 -197609900 + L1MC1 LINE L1 5408 5589 -744 1543 130 0 0 chr3 20427259 20427482 -197609676 - AluJb SINE Alu 0 312 90 2732 144 31 14 chr3 20427489 20427933 -197609225 + L1MC1 LINE L1 5882 6333 0 324 316 118 66 chr3 20427962 20428234 -197608924 - L2 LINE L2 -94 3178 2893 259 311 0 0 chr3 20428412 20428515 -197608643 + (CGGGG)n Simple_repeat Simple_repeat 2 104 0 508 260 59 19 chr3 20428558 20428850 -197608308 + Charlie4a DNA MER1_type 25 386 -122 306 271 0 0 chr3 20428897 20429015 -197608143 + (CA)n Simple_repeat Simple_repeat 1 118 0 267 31 0 0 chr3 20429317 20429349 -197607809 + (TG)n Simple_repeat Simple_repeat 2 33 0 334 266 13 0 chr3 20429560 20429639 -197607519 - MIR SINE MIR -107 155 76 206 305 131 4 chr3 20429782 20430027 -197607131 + L2 LINE L2 2721 3021 -251 268 183 100 0 chr3 20430135 20430195 -197606963 + L2 LINE L2 3205 3270 -2 194 358 32 0 chr3 20430949 20431044 -197606114 + MIR SINE MIR 80 177 -85 624 319 109 28 chr3 20431367 20432082 -197605076 + L2 LINE L2 2413 3184 -129 205 229 42 0 chr3 20432151 20432199 -197604959 + MIR SINE MIR 88 137 -71 25 0 0 0 chr3 20433140 20433165 -197603993 + GC_rich Low_complexity Low_complexity 1 25 0 584 266 107 0 chr3 20433743 20433912 -197603246 + MIR SINE MIR 39 225 -37 240 254 30 0 chr3 20434151 20434218 -197602940 + MIR SINE MIR 76 144 -118 248 276 69 26 chr3 20434594 20434710 -197602448 - MIR3 SINE MIR -17 191 71 288 263 233 35 chr3 20435223 20435554 -197601604 - L2 LINE L2 -2 3311 2859 333 297 162 0 chr3 20436097 20436245 -197600913 + MIR SINE MIR 76 247 -15 315 297 79 0 chr3 20436408 20436509 -197600649 - MIR SINE MIR -65 143 35 699 306 64 30 chr3 20537181 20537446 -197499712 + HERV16 LTR ERVL 1229 1502 -3494 1988 132 0 7 chr3 20537467 20537771 -197499387 - AluSx SINE Alu -10 302 1 1171 282 34 8 chr3 20537787 20538142 -197499016 + HERV16 LTR ERVL 2315 2678 -2318 249 324 0 10 chr3 20538252 20538354 -197498804 + AluSp SINE Alu 20 120 -183 270 0 0 0 chr3 20538554 20538584 -197498574 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr3 20538755 20538777 -197498381 + AT_rich Low_complexity Low_complexity 1 22 0 188 65 0 32 chr3 20538937 20538968 -197498190 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2061 91 11 0 chr3 20538970 20539246 -197497912 - AluSg SINE Alu -31 279 1 295 185 0 0 chr3 20539246 20539300 -197497858 - Alu SINE Alu -4 298 245 671 171 0 9 chr3 20539302 20539413 -197497745 - AluJo/FLAM SINE Alu -201 111 2 311 364 13 46 chr3 20539418 20539500 -197497658 + L2 LINE L2 3122 3198 -74 2209 108 3 0 chr3 20539500 20539805 -197497353 - AluSg SINE Alu -4 306 1 311 364 13 46 chr3 20539805 20539873 -197497285 + L2 LINE L2 3198 3267 -5 23 0 0 0 chr3 20540173 20540196 -197496962 + AT_rich Low_complexity Low_complexity 1 23 0 2153 99 3 7 chr3 20540206 20540509 -197496649 + AluSg SINE Alu 1 302 -8 1677 123 0 0 chr3 20540525 20540769 -197496389 + AluSg SINE Alu 54 297 -13 784 60 10 0 chr3 20540971 20541071 -197496087 - AluSc SINE Alu -207 102 2 830 146 8 0 chr3 20541100 20541230 -197495928 + AluSg SINE Alu 2 132 -178 720 135 10 0 chr3 20541229 20541333 -197495825 - AluJo/FLAM SINE Alu -205 107 3 * 433 175 0 12 chr3 20541340 20541420 -197495738 - L1M4 LINE L1 -1034 5112 5034 2205 97 10 0 chr3 20541422 20541732 -197495426 - AluSq SINE Alu 0 313 1 1116 169 9 35 chr3 20541798 20542029 -197495129 + AluJo SINE Alu 85 309 -3 625 158 0 10 chr3 20542033 20542134 -197495024 + LTR44 LTR ERV1 1 100 -419 1477 138 47 25 chr3 20542135 20542411 -197494747 + AluJb SINE Alu 18 299 -13 625 91 11 0 chr3 20542437 20542525 -197494633 + AluY SINE Alu 215 303 -8 2207 91 3 3 chr3 20542530 20542828 -197494330 - AluSp SINE Alu -15 298 1 1772 122 86 118 chr3 20542848 20543063 -197494095 + LTR44 LTR ERV1 101 321 -198 1302 189 44 37 chr3 20543063 20543194 -197493964 + AluJo SINE Alu 2 131 -171 2226 82 14 0 chr3 20543194 20543487 -197493671 + AluSp SINE Alu 1 297 -16 1302 189 44 37 chr3 20543487 20543651 -197493507 + AluJo SINE Alu 131 299 -3 1984 98 0 73 chr3 20543652 20543806 -197493352 + AluSq SINE Alu 2 123 -190 2034 75 7 4 chr3 20543806 20544084 -197493074 + AluY SINE Alu 21 299 -12 1984 98 0 73 chr3 20544084 20544246 -197492912 + AluSq SINE Alu 123 295 -18 1772 122 86 118 chr3 20544246 20544321 -197492837 + LTR44 LTR ERV1 321 397 -122 1933 68 0 36 chr3 20544321 20544600 -197492558 + AluY SINE Alu 34 302 -9 2049 102 20 7 chr3 20544605 20544900 -197492258 + AluSx SINE Alu 1 299 -13 1772 122 86 118 chr3 20544900 20545033 -197492125 + LTR44 LTR ERV1 401 519 0 1616 157 43 33 chr3 20545177 20545322 -197491836 + AluJb SINE Alu 1 143 -169 2307 72 3 0 chr3 20545322 20545615 -197491543 + AluSg SINE Alu 1 294 -16 1616 157 43 33 chr3 20545615 20545768 -197491390 + AluJb SINE Alu 143 302 -10 304 183 0 0 chr3 20545801 20545861 -197491297 - Alu SINE Alu -2 300 241 422 99 49 12 chr3 20545979 20546060 -197491098 + AluSc SINE Alu 206 289 -20 755 133 8 16 chr3 20546075 20546203 -197490955 + L1MB3 LINE L1 5601 5727 -456 816 157 17 47 chr3 20546210 20546382 -197490776 - LTR37A LTR ERV1 -242 184 18 1810 170 99 7 chr3 20546614 20546995 -197490163 + L1MB3 LINE L1 5738 6145 -57 2120 125 0 0 chr3 20547117 20547428 -197489730 + AluSx SINE Alu 1 311 -1 540 196 93 0 chr3 20547570 20547677 -197489481 + FLAM_C SINE Alu 2 118 -25 2772 159 91 8 chr3 20547718 20548233 -197488925 + MER89 LTR ERV1 2 559 0 2439 55 0 0 chr3 20548704 20548997 -197488161 + AluY SINE Alu 1 293 -18 2142 81 10 0 chr3 20549491 20549788 -197487370 + AluSx SINE Alu 5 304 -8 2102 127 3 7 chr3 20549864 20550172 -197486986 + AluSx SINE Alu 1 307 -5 1692 166 7 10 chr3 20550199 20550507 -197486651 + AluJb SINE Alu 1 307 -5 318 261 0 0 chr3 20550523 20550588 -197486570 + L1MC4a LINE L1 5836 5900 -1908 1793 99 40 33 chr3 20550594 20550897 -197486261 + AluSq SINE Alu 1 305 -8 1057 125 0 27 chr3 20551013 20551197 -197485961 - AluSc SINE Alu -11 298 120 605 191 0 0 chr3 20551344 20551449 -197485709 + FRAM SINE Alu 20 124 -52 662 264 278 0 chr3 20551463 20551736 -197485422 - L2 LINE L2 -613 2701 2353 571 284 61 99 chr3 20551736 20552011 -197485147 - L1MEd LINE L1 -5736 383 99 1423 182 17 4 chr3 20552011 20552247 -197484911 + MER8 DNA MER2_type 1 239 0 1916 139 17 0 chr3 20552249 20552544 -197484614 - AluSx SINE Alu -4 308 9 571 284 61 99 chr3 20552544 20552660 -197484498 - L1MEd LINE L1 -6021 98 4 244 284 302 9 chr3 20552898 20553059 -197484099 - L3 LINE CR1 -3 1574 1461 1726 150 13 13 chr3 20553059 20553366 -197483792 + AluJo SINE Alu 1 307 -5 244 284 302 9 chr3 20553366 20553525 -197483633 - L3 LINE CR1 -116 1461 1160 350 346 15 7 chr3 20555393 20555529 -197481629 + L1MEd LINE L1 561 697 -5422 198 71 0 0 chr3 20555535 20555563 -197481595 + (CA)n Simple_repeat Simple_repeat 2 29 0 2149 112 0 0 chr3 20555848 20556143 -197481015 - AluSx SINE Alu -16 296 2 408 118 0 15 chr3 20556143 20556211 -197480947 + L1MB8 LINE L1 6111 6177 -1 849 186 25 25 chr3 20556243 20556404 -197480754 + FRAM SINE Alu 2 162 -4 807 139 0 31 chr3 20556405 20556534 -197480624 + FLAM_C SINE Alu 2 126 -17 1842 118 14 24 chr3 20556560 20556856 -197480302 + AluSx SINE Alu 2 294 -18 1972 124 0 3 chr3 20556864 20557154 -197480004 + AluSg SINE Alu 1 289 -21 318 290 45 26 chr3 20557155 20557310 -197479848 + L1MEd LINE L1 1029 1186 -4933 233 139 12 139 chr3 20557309 20557395 -197479763 + L1M4 LINE L1 3932 4006 -2140 * 411 239 33 11 chr3 20557419 20557511 -197479647 + MER5A DNA MER1_type 3 96 -93 1941 130 6 32 chr3 20557511 20557827 -197479331 - AluSx SINE Alu -4 308 1 1448 215 13 19 chr3 20558075 20558382 -197478776 + MLT1A1 LTR MaLR 1 305 -60 188 35 35 0 chr3 20558383 20558412 -197478746 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1726 75 0 0 chr3 20558412 20558626 -197478532 - AluSg/x SINE Alu -33 279 66 681 108 10 10 chr3 20558726 20558828 -197478330 - AluSq/x SINE Alu -210 103 2 244 259 184 70 chr3 20560963 20561065 -197476093 - Charlie7 DNA MER1_type -1923 689 600 2192 103 3 0 chr3 20561065 20561365 -197475793 - AluSx SINE Alu -11 301 1 244 259 184 70 chr3 20561365 20561463 -197475695 - Charlie7 DNA MER1_type -2012 600 466 609 195 58 190 chr3 20561871 20562188 -197474970 + Charlie7 DNA MER1_type 1428 1785 -827 180 0 0 0 chr3 20562188 20562208 -197474950 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1640 160 7 11 chr3 20562209 20562490 -197474668 - AluJo SINE Alu -32 280 1 609 195 58 190 chr3 20562490 20562586 -197474572 + Charlie7 DNA MER1_type 1784 1788 -824 2242 73 0 10 chr3 20562631 20562934 -197474224 - AluY SINE Alu -11 300 1 1768 93 4 8 chr3 20562940 20563188 -197473970 + AluSp SINE Alu 53 299 -14 254 254 87 8 chr3 20563189 20563315 -197473843 + Charlie7 DNA MER1_type 2429 2564 -48 889 168 13 0 chr3 20563569 20563724 -197473434 - AluSg/x SINE Alu -20 292 136 324 311 49 37 chr3 20563928 20564092 -197473066 + MER5A DNA MER1_type 14 179 -10 2292 91 0 3 chr3 20564649 20564956 -197472202 - AluSp SINE Alu -6 307 2 2007 107 3 35 chr3 20565111 20565421 -197471737 - AluSx SINE Alu -12 300 1 2375 90 3 0 chr3 20565491 20565803 -197471355 - AluSp SINE Alu 0 313 1 607 185 49 90 chr3 20565803 20565993 -197471165 - LTR23-int LTR ERV1 -2673 3590 3394 2048 92 20 26 chr3 20565993 20566296 -197470862 - AluSq SINE Alu -12 301 1 607 185 49 90 chr3 20566296 20566493 -197470665 - LTR23-int LTR ERV1 -2869 3394 1920 2111 108 10 10 chr3 20566642 20566947 -197470211 - AluSx SINE Alu -7 305 1 1564 141 23 59 chr3 20567009 20567314 -197469844 - AluJb SINE Alu -18 294 1 316 197 15 4 chr3 20567376 20567482 -197469676 - LTR23-int LTR ERV1 -3093 1929 1735 1798 154 3 0 chr3 20567577 20567863 -197469295 - AluSx SINE Alu -25 287 1 2157 156 97 0 chr3 20568265 20568655 -197468503 - MSTA LTR MaLR 0 428 1 879 134 49 0 chr3 20568655 20568797 -197468361 - MSTA-int LTR MaLR 0 1651 1503 1487 97 0 0 chr3 20568797 20568992 -197468166 - AluSx SINE Alu -117 195 1 1249 148 29 162 chr3 20569026 20569371 -197467787 + AluJb SINE Alu 4 302 0 2116 101 7 0 chr3 20569377 20569674 -197467484 + AluSq SINE Alu 1 299 -14 257 272 0 0 chr3 20569711 20569792 -197467366 - L1 LINE L1 -2380 3766 3686 815 204 24 0 chr3 20569801 20569968 -197467190 - FRAM SINE Alu -12 164 1 544 180 0 0 chr3 20569968 20570057 -197467101 - L1ME LINE L1 -598 5568 5480 578 113 0 0 chr3 20570057 20570137 -197467021 - AluSg/x SINE Alu -16 294 215 1929 112 14 0 chr3 20570545 20570852 -197466306 - AluSx SINE Alu 0 311 1 1653 180 3 0 chr3 20570900 20571194 -197465964 - AluJo SINE Alu -16 296 2 426 273 88 10 chr3 20571201 20571395 -197465763 - L1ME LINE L1 -298 5823 5615 494 216 0 0 chr3 20571792 20571880 -197465278 + AluJ/FLAM SINE Alu 2 89 -223 333 235 0 59 chr3 20572055 20572157 -197465001 - L1ME LINE L1 -539 5631 5536 416 154 26 0 chr3 20572291 20572369 -197464789 - Charlie5 DNA MER1_type -27 2585 2506 2005 141 0 0 chr3 20572372 20572663 -197464495 - AluSx SINE Alu -21 291 1 1379 195 14 30 chr3 20572663 20572824 -197464334 - AluJo SINE Alu -20 292 137 2038 107 29 0 chr3 20572824 20573105 -197464053 - AluSx SINE Alu -23 289 1 1379 195 14 30 chr3 20573105 20573240 -197463918 - AluJo SINE Alu -175 137 1 1134 129 15 40 chr3 20573287 20573488 -197463670 - AluJo SINE Alu -116 196 1 32 43 0 0 chr3 20573840 20573886 -197463272 + AT_rich Low_complexity Low_complexity 1 46 0 280 371 9 9 chr3 20573977 20574093 -197463065 + MIR SINE MIR 32 147 -115 2277 91 3 3 chr3 20574257 20574564 -197462594 + AluSg SINE Alu 1 307 -3 2194 101 3 0 chr3 20575254 20575561 -197461597 + AluY SINE Alu 1 308 -3 245 108 246 0 chr3 20575671 20575736 -197461422 - Tigger7 DNA MER2_type -142 2445 2365 2122 117 0 16 chr3 20575970 20576287 -197460871 - AluSq SINE Alu -1 312 1 2060 106 3 13 chr3 20576291 20576592 -197460566 - AluSp SINE Alu -15 298 1 1966 108 10 3 chr3 20576791 20577079 -197460079 - AluSp SINE Alu -23 290 1 255 243 271 7 chr3 20577703 20577847 -197459311 - MIR SINE MIR -10 252 71 322 238 133 66 chr3 20577926 20578107 -197459051 - MIR SINE MIR -47 215 23 1323 78 11 0 chr3 20578272 20578452 -197458706 - AluSg/x SINE Alu 0 312 131 2131 99 3 6 chr3 20578453 20578766 -197458392 - AluSx SINE Alu 0 312 1 30 27 0 0 chr3 20579918 20579955 -197457203 + GC_rich Low_complexity Low_complexity 1 37 0 746 146 0 0 chr3 20580443 20580553 -197456605 + AluJb SINE Alu 4 113 -199 27 0 0 0 chr3 20580565 20580592 -197456566 + AT_rich Low_complexity Low_complexity 1 27 0 1741 154 3 16 chr3 20580868 20581174 -197455984 + AluJo SINE Alu 1 302 -10 229 204 0 0 chr3 20581475 20581524 -197455634 + L1MC/D LINE L1 5779 5827 -517 2115 82 4 4 chr3 20581531 20581833 -197455325 + AluSc SINE Alu 1 302 0 2319 57 3 7 chr3 20582113 20582410 -197454748 + AluY SINE Alu 1 296 -15 1061 238 82 27 chr3 20582514 20582926 -197454232 + L1MC4 LINE L1 7608 8042 0 1734 153 24 0 chr3 20582937 20583225 -197453933 + AluJb SINE Alu 4 298 -14 459 192 81 10 chr3 20583431 20583530 -197453628 - MER57A LTR ERV1 -43 360 255 1202 148 148 34 chr3 20584268 20584389 -197452769 + AluJo SINE Alu 2 108 -204 1769 150 28 3 chr3 20584389 20584676 -197452482 + AluJb SINE Alu 1 294 -18 1202 148 148 34 chr3 20584676 20584817 -197452341 + AluJo SINE Alu 108 294 -18 2139 102 10 0 chr3 20584999 20585303 -197451855 + AluSp SINE Alu 5 311 -2 517 244 109 6 chr3 20585314 20585470 -197451688 - MIR SINE MIR -62 200 29 716 179 108 28 chr3 20585470 20585682 -197451476 - Charlie4 DNA MER1_type 0 1961 1733 456 159 0 0 chr3 20585707 20585776 -197451382 + Tigger2 DNA MER2_type 1 69 -2649 * 2286 144 80 12 chr3 20585760 20586183 -197450975 + Tigger2 DNA MER2_type 2267 2718 0 497 153 214 0 chr3 20586193 20586324 -197450834 - Charlie4 DNA MER1_type -1760 201 43 659 203 31 0 chr3 20586398 20586526 -197450632 + FLAM_A SINE Alu 1 132 -1 1721 269 192 25 chr3 20586529 20587096 -197450062 + L2 LINE L2 2137 2608 -705 2010 122 0 0 chr3 20587096 20587390 -197449768 + AluSg SINE Alu 1 294 -16 1721 269 192 25 chr3 20587390 20587703 -197449455 + L2 LINE L2 2608 2867 -446 1911 116 3 35 chr3 20587703 20588013 -197449145 - AluSx SINE Alu -12 300 1 1721 269 192 25 chr3 20588013 20588133 -197449025 + L2 LINE L2 2867 3288 -25 201 361 124 0 chr3 20588176 20588273 -197448885 + L2 LINE L2 3180 3288 -25 553 285 111 19 chr3 20588602 20588831 -197448327 - MIR SINE MIR -21 241 8 230 303 23 68 chr3 20588847 20588979 -197448179 + MIR3 SINE MIR 72 197 -11 1344 200 89 0 chr3 20589057 20589337 -197447821 + AluJo SINE Alu 1 305 -7 791 212 72 1 chr3 20591201 20591417 -197445741 - L1ME LINE L1 -608 5556 5318 1015 185 28 84 chr3 20591420 20591573 -197445585 + MLT1A2 LTR MaLR 5 165 -209 918 108 0 0 chr3 20591573 20591703 -197445455 + L1PB1 LINE L1 6016 6145 -6 1015 185 28 84 chr3 20591703 20591750 -197445408 + MLT1A2 LTR MaLR 165 213 -161 717 174 8 38 chr3 20591750 20591882 -197445276 + AluJo/FLAM SINE Alu 2 129 -173 2321 90 0 3 chr3 20591882 20592193 -197444965 + AluY SINE Alu 1 310 -1 2255 101 0 0 chr3 20592196 20592502 -197444656 + AluSx SINE Alu 1 306 -6 1015 185 28 84 chr3 20592502 20592709 -197444449 + MLT1A2 LTR MaLR 214 372 -2 814 147 10 113 chr3 20592709 20592757 -197444401 - L1M4b LINE L1 -5333 1526 1475 1833 163 7 0 chr3 20592757 20593063 -197444095 + AluSx SINE Alu 1 308 -4 2117 96 10 7 chr3 20593063 20593364 -197443794 + AluSg SINE Alu 1 302 -8 814 147 10 113 chr3 20593364 20593518 -197443640 - L1M4b LINE L1 -5382 1477 1344 1196 54 0 7 chr3 20593520 20593669 -197443489 + AluSg SINE Alu 1 148 -162 198 0 0 0 chr3 20593776 20593798 -197443360 + (T)n Simple_repeat Simple_repeat 1 22 0 736 138 9 0 chr3 20593804 20593941 -197443217 + AluSg/x SINE Alu 177 314 0 2067 130 18 132 chr3 20594036 20594234 -197442924 - LTR23 LTR ERV1 0 437 218 1954 137 10 3 chr3 20594234 20594533 -197442625 + AluSx SINE Alu 1 301 -11 2067 130 18 132 chr3 20594533 20594618 -197442540 - LTR23 LTR ERV1 -219 218 125 1957 126 10 17 chr3 20594618 20594754 -197442404 + AluJb SINE Alu 1 136 -176 1794 114 99 0 chr3 20594754 20595027 -197442131 + AluSx SINE Alu 1 300 -12 1957 126 10 17 chr3 20595027 20595192 -197441966 + AluJb SINE Alu 136 300 -12 2067 130 18 132 chr3 20595192 20595241 -197441917 - LTR23 LTR ERV1 -312 125 72 2230 100 3 3 chr3 20595241 20595550 -197441608 + AluSc SINE Alu 1 309 0 2067 130 18 132 chr3 20595550 20595628 -197441530 - LTR23 LTR ERV1 -365 72 86 1811 161 3 10 chr3 20595628 20595938 -197441220 - AluJb SINE Alu -4 308 1 2067 130 18 132 chr3 20595938 20596016 -197441142 - LTR23 LTR ERV1 -350 87 2 1491 203 7 7 chr3 20596436 20596567 -197440591 + AluJo SINE Alu 1 131 -181 2088 115 6 13 chr3 20596567 20596880 -197440278 + AluY SINE Alu 1 311 0 1491 203 7 7 chr3 20596880 20597039 -197440119 + AluJo SINE Alu 130 291 -21 2037 120 10 3 chr3 20597288 20597587 -197439571 + AluSx SINE Alu 1 301 -11 2039 104 0 0 chr3 20597920 20598198 -197438960 - AluSg SINE Alu -32 278 1 290 248 182 33 chr3 20598268 20598371 -197438787 + MIR SINE MIR 1 126 -136 2042 99 26 10 chr3 20598371 20598674 -197438484 - AluY SINE Alu -3 308 1 290 248 182 33 chr3 20598674 20598691 -197438467 + MIR SINE MIR 126 139 -123 916 108 0 43 chr3 20598996 20599135 -197438023 + FLAM_C SINE Alu 1 133 0 1579 131 55 24 chr3 20599324 20599615 -197437543 + AluJb SINE Alu 1 300 -12 199 241 138 0 chr3 20599743 20599801 -197437357 - MIR3 SINE MIR -5 203 138 824 252 147 22 chr3 20599923 20600068 -197437090 - HAL1 LINE L1 -1606 901 775 873 218 39 0 chr3 20600068 20600247 -197436911 - MER5A DNA MER1_type 0 189 4 824 252 147 22 chr3 20600247 20600517 -197436641 - HAL1 LINE L1 -1731 776 434 238 246 223 40 chr3 20600539 20600714 -197436444 - HAL1 LINE L1 -2159 348 142 562 236 173 11 chr3 20600819 20601010 -197436148 + MIR SINE MIR 25 246 -16 252 0 0 0 chr3 20601010 20601038 -197436120 + (TG)n Simple_repeat Simple_repeat 2 29 0 2069 132 3 0 chr3 20601039 20601342 -197435816 - AluSx SINE Alu -8 304 1 263 288 0 0 chr3 20601368 20601427 -197435731 - HAL1 LINE L1 -2439 68 10 2147 96 7 0 chr3 20601500 20601802 -197435356 + AluSc SINE Alu 1 304 -5 458 246 49 35 chr3 20601821 20601963 -197435195 - MIR3 SINE MIR -50 158 15 777 209 25 12 chr3 20603195 20603358 -197433800 + FRAM SINE Alu 1 165 -1 1108 103 157 0 chr3 20603392 20603577 -197433581 + L1PB4 LINE L1 5941 6154 -2 267 263 85 34 chr3 20603591 20603709 -197433449 - MIR SINE MIR -120 142 19 21 0 0 0 chr3 20604302 20604323 -197432835 + AT_rich Low_complexity Low_complexity 1 21 0 1285 162 19 76 chr3 20604667 20604774 -197432384 + AluJb SINE Alu 2 114 -198 180 0 0 0 chr3 20604774 20604794 -197432364 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1285 162 19 76 chr3 20604794 20605000 -197432158 + AluJb SINE Alu 114 297 -15 696 156 70 70 chr3 20605146 20605332 -197431826 + MER4-int LTR ERV1 3545 3730 -2868 2187 92 10 0 chr3 20605465 20605769 -197431389 - AluSq SINE Alu -6 307 1 207 0 0 0 chr3 20605776 20605799 -197431359 + (T)n Simple_repeat Simple_repeat 1 23 0 544 149 0 106 chr3 20605806 20605947 -197431211 + MER4-int LTR ERV1 3788 3913 -2685 2071 131 0 0 chr3 20605952 20606258 -197430900 + AluSx SINE Alu 6 311 -1 1723 146 0 4 chr3 20606267 20606541 -197430617 + AluJo SINE Alu 1 273 -39 249 33 0 0 chr3 20606560 20606590 -197430568 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1652 171 10 13 chr3 20606621 20606931 -197430227 - AluJo SINE Alu -3 309 1 729 206 80 150 chr3 20606932 20607384 -197429774 + MER4-int LTR ERV1 4091 4515 -1816 280 67 67 22 chr3 20607384 20607429 -197429729 - AluJo SINE Alu -168 134 88 729 206 80 150 chr3 20607429 20607707 -197429451 + MER4-int LTR ERV1 4515 4811 -1520 1036 168 74 5 chr3 20607708 20607911 -197429247 - AluJb SINE Alu -9 303 87 1767 162 3 10 chr3 20607944 20608258 -197428900 + AluJb SINE Alu 1 312 0 1691 167 3 7 chr3 20608473 20608760 -197428398 - AluJb SINE Alu -26 286 1 23 0 0 0 chr3 20608828 20608851 -197428307 + AT_rich Low_complexity Low_complexity 1 23 0 1423 144 125 4 chr3 20608856 20609120 -197428038 + AluSx SINE Alu 2 297 -15 1185 161 3 110 chr3 20609188 20609289 -197427869 + LTR44 LTR ERV1 1 111 -408 2178 145 23 78 chr3 20609289 20609608 -197427550 + L1MA3 LINE L1 5818 6100 -205 1998 124 0 7 chr3 20609608 20609899 -197427259 - AluSx SINE Alu -23 289 1 2178 145 23 78 chr3 20609899 20610095 -197427063 + L1MA3 LINE L1 6100 6305 0 1185 161 3 110 chr3 20610095 20610141 -197427017 + LTR44 LTR ERV1 111 160 -359 1918 142 0 0 chr3 20610141 20610455 -197426703 - AluSx SINE Alu 0 312 1 1185 161 3 110 chr3 20610455 20610597 -197426561 + LTR44 LTR ERV1 160 260 -259 2743 200 132 66 chr3 20610607 20610761 -197426397 - Charlie2a DNA MER1_type -1227 1635 1493 2420 64 0 0 chr3 20610761 20611058 -197426100 - AluSg SINE Alu -13 297 1 2743 200 132 66 chr3 20611058 20611377 -197425781 - Charlie2a DNA MER1_type -1369 1493 1197 1595 193 23 7 chr3 20611377 20611682 -197425476 + AluJb SINE Alu 1 310 -2 2743 200 132 66 chr3 20611682 20611757 -197425401 - Charlie2a DNA MER1_type -1665 1197 1128 2134 111 7 0 chr3 20611757 20612055 -197425103 - AluSg SINE Alu -10 300 1 2743 200 132 66 chr3 20612055 20612653 -197424505 - Charlie2a DNA MER1_type -1734 1128 411 216 0 0 0 chr3 20612659 20612683 -197424475 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 432 0 0 0 chr3 20612682 20612730 -197424428 + (TG)n Simple_repeat Simple_repeat 1 48 0 2305 76 10 0 chr3 20612967 20613269 -197423889 + AluSp SINE Alu 2 306 -7 763 165 9 0 chr3 20613382 20613497 -197423661 + FLAM_C SINE Alu 3 118 -25 33 25 0 0 chr3 20613497 20613537 -197423621 + AT_rich Low_complexity Low_complexity 1 40 0 2023 130 10 0 chr3 20614048 20614347 -197422811 + AluSx SINE Alu 1 302 -10 283 188 104 42 chr3 20615077 20615173 -197421985 - L1ME4a LINE L1 -70 6051 5950 251 283 58 17 chr3 20615314 20615434 -197421724 - L1ME4a LINE L1 -373 5748 5624 976 134 0 0 chr3 20615434 20615576 -197421582 + AluJb SINE Alu 1 142 -170 767 204 79 0 chr3 20615632 20615784 -197421374 + FAM SINE Alu 1 164 -11 1651 164 45 33 chr3 20615794 20616130 -197421028 - MLT1A1 LTR MaLR -25 340 1 462 256 37 104 chr3 20616130 20616318 -197420840 - L1ME4a LINE L1 -136 5985 5836 2145 114 0 0 chr3 20616318 20616608 -197420550 - AluSx SINE Alu -22 290 1 462 256 37 104 chr3 20616608 20616821 -197420337 - L1ME4a LINE L1 -285 5836 5610 1733 173 123 77 chr3 20617002 20617483 -197419675 + MLT1D LTR MaLR 3 505 0 252 0 0 0 chr3 20617566 20617594 -197419564 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2097 195 32 64 chr3 20617997 20618136 -197419022 + MER110 LTR ERV1 3 145 -346 2037 107 0 0 chr3 20618136 20618441 -197418717 + AluSx SINE Alu 1 305 0 2097 195 32 64 chr3 20618441 20618514 -197418644 + MER110 LTR ERV1 145 219 -272 1534 138 119 0 chr3 20618514 20618775 -197418383 + AluJb SINE Alu 6 297 -15 2097 195 32 64 chr3 20618775 20619058 -197418100 + MER110 LTR ERV1 219 484 -7 264 184 0 0 chr3 20619058 20619107 -197418051 - FLAM_A SINE Alu -1 132 84 1241 157 5 37 chr3 20619108 20619325 -197417833 - AluJo SINE Alu -94 218 9 2205 109 0 6 chr3 20619328 20619641 -197417517 - AluSx SINE Alu 0 312 2 2206 98 3 0 chr3 20619792 20620097 -197417061 - AluY SINE Alu -5 306 1 256 293 20 20 chr3 20620100 20620199 -197416959 - L1ME4a LINE L1 -508 5613 5515 894 152 76 149 chr3 20620207 20620301 -197416857 - LTR37A LTR ERV1 0 426 327 2185 110 0 3 chr3 20620301 20620611 -197416547 - AluSx SINE Alu -3 309 1 894 152 76 149 chr3 20620611 20620695 -197416463 - LTR37A LTR ERV1 -99 327 238 738 90 8 37 chr3 20620695 20620829 -197416329 + L1MA4 LINE L1 6171 6300 0 894 152 76 149 chr3 20620829 20621044 -197416114 - LTR37A LTR ERV1 -188 238 61 1096 117 0 23 chr3 20621047 20621218 -197415940 + AluSg/x SINE Alu 137 303 -9 2355 68 0 10 chr3 20621401 20621709 -197415449 + AluSp SINE Alu 1 305 -8 26 50 0 0 chr3 20622013 20622053 -197415105 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr3 20622102 20622125 -197415033 + AT_rich Low_complexity Low_complexity 1 23 0 1917 122 57 3 chr3 20622570 20622866 -197414292 - AluSx SINE Alu 0 312 1 339 340 0 0 chr3 20622880 20622974 -197414184 + (CCCA)n Simple_repeat Simple_repeat 3 96 0 352 183 10 10 chr3 20622987 20623091 -197414067 + (TCCA)n Simple_repeat Simple_repeat 4 107 0 1213 141 8 77 chr3 20623122 20623356 -197413802 + MER20 DNA MER1_type 2 219 0 701 163 16 23 chr3 20623447 20623576 -197413582 - FLAM_C SINE Alu -14 129 2 246 273 0 100 chr3 20623581 20623691 -197413467 + MER5B DNA MER1_type 8 106 -72 2347 93 3 0 chr3 20623771 20624083 -197413075 + AluSp SINE Alu 1 313 0 855 207 35 12 chr3 20624213 20624382 -197412776 - MER5B DNA MER1_type -5 173 1 973 136 28 2 chr3 20624471 20624721 -197412437 - AluSq SINE Alu -6 307 2 263 128 0 0 chr3 20624784 20624831 -197412327 - Alu SINE Alu 0 302 256 1097 82 0 14 chr3 20624836 20624983 -197412175 - AluSq SINE Alu -167 145 1 198 209 0 0 chr3 20625106 20625149 -197412009 + (TG)n Simple_repeat Simple_repeat 2 44 0 224 383 25 8 chr3 20625293 20625413 -197411745 - MIR SINE MIR -67 141 20 28 0 0 0 chr3 20625685 20625713 -197411445 + AT_rich Low_complexity Low_complexity 1 28 0 920 121 0 21 chr3 20625713 20625853 -197411305 + FLAM_C SINE Alu 1 137 -6 217 229 0 0 chr3 20625942 20625990 -197411168 + T-rich Low_complexity Low_complexity 1 48 0 847 173 6 26 chr3 20626046 20626202 -197410956 - AluJo SINE Alu -159 153 1 577 277 117 39 chr3 20626306 20626588 -197410570 - LTR16C LTR ERVL -187 304 1 1737 104 10 78 chr3 20626603 20626912 -197410246 + AluSx SINE Alu 1 288 -24 2090 97 0 53 chr3 20626913 20627234 -197409924 + AluSg SINE Alu 1 304 -6 1091 254 42 17 chr3 20627234 20627559 -197409599 - L2 LINE L2 -282 3031 2696 1755 177 3 0 chr3 20627716 20628027 -197409131 + AluJb SINE Alu 1 312 0 461 278 311 13 chr3 20628043 20628342 -197408816 - L1ME4a LINE L1 -6 6115 5728 446 209 22 0 chr3 20628350 20628441 -197408717 - L1ME4a LINE L1 -509 5612 5520 360 223 53 11 chr3 20629099 20629193 -197407965 + MIR SINE MIR 155 252 -10 1737 176 0 3 chr3 20629223 20629525 -197407633 - AluJo SINE Alu -11 301 1 1687 199 41 28 chr3 20630785 20631147 -197406011 - MLT1A2 LTR MaLR 0 374 8 1925 141 3 3 chr3 20631149 20631448 -197405710 + AluJo SINE Alu 1 299 -13 2182 98 17 0 chr3 20632688 20632985 -197404173 + AluSx SINE Alu 1 302 -10 1926 124 29 10 chr3 20633312 20633618 -197403540 + AluSx SINE Alu 1 312 0 853 264 23 0 chr3 20635122 20635342 -197401816 + MIR SINE MIR 17 241 -21 7996 54 1 0 chr3 20635386 20636351 -197400807 - LTR5 LTR ERVK -3 966 1 1188 144 18 168 chr3 20636897 20637030 -197400128 + MER33 DNA MER1_type 1 152 -2433 2113 135 127 16 chr3 20637030 20637415 -197399743 - MSTA LTR MaLR 0 428 1 1188 144 18 168 chr3 20637415 20637480 -197399678 + MER33 DNA MER1_type 152 225 -2360 1031 181 0 0 chr3 20637480 20637646 -197399512 + FRAM SINE Alu 1 166 0 1188 144 18 168 chr3 20637646 20637827 -197399331 + MER33 DNA MER1_type 225 324 0 225 321 42 54 chr3 20637902 20638070 -197399088 - L2 LINE L2 -213 3059 2894 25 0 0 0 chr3 20638714 20638739 -197398419 + AT_rich Low_complexity Low_complexity 1 25 0 9894 62 5 41 chr3 20638739 20640167 -197396991 - SVA Other Other -9 1377 1 492 293 26 0 chr3 20640206 20640322 -197396836 + MER5A DNA MER1_type 71 189 0 593 266 77 14 chr3 20640485 20640724 -197396434 + L1ME LINE L1 5358 5610 -556 540 250 26 0 chr3 20640914 20641030 -197396128 - MER5A DNA MER1_type 0 189 71 221 213 13 120 chr3 20641084 20641159 -197395999 - MER5A DNA MER1_type -122 67 1 218 336 18 35 chr3 20641159 20641270 -197395888 + MIR SINE MIR 9 117 -145 985 128 14 0 chr3 20641278 20641426 -197395732 - AluSg/x SINE Alu -29 283 134 2084 98 28 0 chr3 20641426 20641712 -197395446 - AluSx SINE Alu -18 294 1 476 289 39 6 chr3 20641712 20641868 -197395290 + MIR SINE MIR 97 257 -5 268 203 69 0 chr3 20642048 20642128 -197395030 + L1ME LINE L1 5698 5781 -340 1754 156 7 3 chr3 20642433 20642734 -197394424 + AluSx SINE Alu 1 302 -10 1998 117 0 26 chr3 20642847 20643155 -197394003 - AluSg SINE Alu -10 300 1 1713 135 20 13 chr3 20643266 20643569 -197393589 - AluJo SINE Alu -5 307 3 400 290 86 6 chr3 20643868 20644030 -197393128 + MIR3 SINE MIR 31 205 -3 2058 121 7 0 chr3 20644306 20644604 -197392554 - AluSx SINE Alu -12 300 1 676 128 0 0 chr3 20645261 20645363 -197391795 + U13 snRNA snRNA 1 102 -2 523 269 71 120 chr3 20645381 20645554 -197391604 - L2 LINE L2 0 3313 3133 783 209 126 0 chr3 20645554 20645736 -197391422 - MER3 DNA MER1_type -3 206 2 523 269 71 120 chr3 20645736 20645825 -197391333 - L2 LINE L2 -180 3133 3041 1808 146 31 0 chr3 20645825 20646112 -197391046 - AluSx SINE Alu -16 296 1 523 269 71 120 chr3 20646112 20646297 -197390861 - L2 LINE L2 -272 3041 2887 227 182 13 91 chr3 20646360 20646437 -197390721 + L1ME LINE L1 5664 5734 -387 2284 91 0 0 chr3 20646442 20646739 -197390419 + AluSx SINE Alu 1 297 -15 1563 169 32 3 chr3 20646852 20647136 -197390022 + AluJo SINE Alu 1 292 -20 2072 119 3 0 chr3 20647146 20647441 -197389717 + AluSq SINE Alu 2 297 -16 497 262 16 0 chr3 20648686 20648808 -197388350 + MIR SINE MIR 23 146 -116 24 0 0 0 chr3 20649311 20649335 -197387823 + AT_rich Low_complexity Low_complexity 1 24 0 466 330 34 11 chr3 20651291 20651467 -197385691 - MIR SINE MIR -79 183 4 526 200 50 61 chr3 20651611 20651791 -197385367 + MIR SINE MIR 4 181 -81 331 250 176 16 chr3 20652882 20653070 -197384088 + L1ME4a LINE L1 5259 5476 -694 311 219 68 82 chr3 20653197 20653343 -197383815 + L1ME4a LINE L1 5636 5779 -342 230 227 67 88 chr3 20653386 20653580 -197383578 - L1MC4 LINE L1 -16 8026 7837 363 258 119 60 chr3 20653583 20653703 -197383455 + L1ME4a LINE L1 5805 5937 -184 1620 173 24 0 chr3 20653703 20653998 -197383160 + AluJo SINE Alu 1 302 -10 363 258 119 60 chr3 20653998 20654028 -197383130 + L1ME4a LINE L1 5937 5964 -157 235 116 0 0 chr3 20654050 20654093 -197383065 + LTR66 LTR ERVL 394 436 -174 236 152 0 0 chr3 20654102 20654148 -197383010 - LTR66 LTR ERVL -171 439 394 183 156 0 0 chr3 20654165 20654197 -197382961 + (TATG)n Simple_repeat Simple_repeat 1 32 0 2399 104 0 0 chr3 20655037 20655344 -197381814 - AluSp SINE Alu -6 307 1 2183 114 7 0 chr3 20655481 20655771 -197381387 - AluSx SINE Alu -16 296 5 1140 137 53 123 chr3 20655775 20655964 -197381194 + LTR37B LTR ERV1 135 289 -179 1828 172 10 10 chr3 20655964 20656272 -197380886 - AluJb SINE Alu -4 308 1 1140 137 53 123 chr3 20656272 20656441 -197380717 + LTR37B LTR ERV1 289 468 0 360 68 0 0 chr3 20656609 20656653 -197380505 + Alu SINE Alu 1 44 -255 21 0 0 0 chr3 20656910 20656931 -197380227 + AT_rich Low_complexity Low_complexity 1 21 0 2302 104 3 0 chr3 20657185 20657483 -197379675 - AluSx SINE Alu -8 304 6 2215 116 0 13 chr3 20657510 20657675 -197379483 - AluSx SINE Alu -14 298 137 2326 84 23 3 chr3 20657675 20657974 -197379184 - AluSc SINE Alu -4 305 1 2215 116 0 13 chr3 20657974 20658110 -197379048 - AluSx SINE Alu -175 137 1 2370 105 0 3 chr3 20658147 20658461 -197378697 - AluSq SINE Alu 0 313 1 1895 159 6 16 chr3 20658765 20659080 -197378078 + AluJo SINE Alu 1 312 0 2044 101 7 4 chr3 20659746 20660023 -197377135 + AluSc SINE Alu 1 278 -31 234 0 0 0 chr3 20660026 20660052 -197377106 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 204 344 16 0 chr3 20660062 20660123 -197377035 - MIR SINE MIR -117 91 30 505 216 24 8 chr3 20660194 20660319 -197376839 + Charlie5 DNA MER1_type 7 133 -2479 * 1932 143 58 0 chr3 20660315 20660678 -197376480 + Charlie5 DNA MER1_type 2241 2624 0 181 326 93 0 chr3 20661150 20661236 -197375922 - MIR3 SINE MIR -1 207 114 2443 97 0 0 chr3 20664180 20664490 -197372668 + AluSx SINE Alu 1 310 -2 201 74 0 0 chr3 20665900 20665927 -197371231 + (TG)n Simple_repeat Simple_repeat 1 27 0 1872 146 0 14 chr3 20665984 20666264 -197370894 - AluJb SINE Alu -18 294 19 617 221 0 8 chr3 20666301 20666423 -197370735 - FLAM_A SINE Alu -4 138 18 1942 150 3 35 chr3 20666454 20666596 -197370562 + AluJb SINE Alu 1 146 -166 2198 108 0 0 chr3 20666596 20666919 -197370239 + AluSx SINE Alu 1 323 0 1942 150 3 35 chr3 20666919 20667088 -197370070 + AluJb SINE Alu 146 303 -9 2071 140 3 13 chr3 20667096 20667404 -197369754 + AluSx SINE Alu 1 305 -7 1968 67 0 4 chr3 20667511 20667777 -197369381 - AluY SINE Alu 0 310 46 1288 171 14 46 chr3 20667844 20668124 -197369034 - AluJb SINE Alu -2 310 40 1460 170 92 3 chr3 20668330 20668612 -197368546 + AluJo SINE Alu 1 307 -5 265 336 25 34 chr3 20668905 20669024 -197368134 + L2 LINE L2 3137 3254 -18 2129 141 0 0 chr3 20669241 20669553 -197367605 - AluJb SINE Alu 0 312 1 222 250 56 0 chr3 20670022 20670094 -197367064 + MIR3 SINE MIR 109 184 -24 241 342 0 43 chr3 20671027 20671188 -197365970 + G-rich Low_complexity Low_complexity 6 159 0 1638 174 25 0 chr3 20671862 20672137 -197365021 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 20672159 20672179 -197364979 + (CA)n Simple_repeat Simple_repeat 1 20 0 2173 119 3 3 chr3 20672231 20672542 -197364616 - AluSx SINE Alu -1 311 1 245 259 188 36 chr3 20672615 20672715 -197364443 + MIR SINE MIR 4 124 -138 2164 99 26 10 chr3 20672715 20673018 -197364140 - AluY SINE Alu -3 308 1 245 259 188 36 chr3 20673018 20673029 -197364129 + MIR SINE MIR 124 132 -130 908 108 0 43 chr3 20673340 20673479 -197363679 + FLAM_C SINE Alu 1 133 0 1957 123 41 17 chr3 20673670 20673963 -197363195 + AluJb SINE Alu 1 300 -12 322 269 90 21 chr3 20674271 20674416 -197362742 - HAL1 LINE L1 -1606 901 747 869 218 39 0 chr3 20674416 20674595 -197362563 - MER5A DNA MER1_type 0 189 4 691 219 76 19 chr3 20674655 20674865 -197362293 - HAL1 LINE L1 -1852 655 434 240 246 223 40 chr3 20674887 20675062 -197362096 - HAL1 LINE L1 -2159 348 142 476 241 173 11 chr3 20675167 20675358 -197361800 + MIR SINE MIR 25 246 -16 216 0 0 0 chr3 20675358 20675382 -197361776 + (TG)n Simple_repeat Simple_repeat 2 25 0 2210 129 3 0 chr3 20675383 20675686 -197361472 - AluSx SINE Alu -8 304 1 265 288 0 0 chr3 20675712 20675771 -197361387 - HAL1 LINE L1 -2439 68 10 2273 96 7 0 chr3 20675844 20676146 -197361012 + AluSc SINE Alu 1 304 -5 406 243 60 39 chr3 20676162 20676307 -197360851 - MIR3 SINE MIR -68 140 15 770 209 25 12 chr3 20677539 20677702 -197359456 + FRAM SINE Alu 1 165 -1 1113 103 157 0 chr3 20677736 20677921 -197359237 + L1PB4 LINE L1 5941 6154 -2 252 221 45 36 chr3 20677931 20678052 -197359106 - MIR SINE MIR -61 147 19 1866 146 10 3 chr3 20678368 20678663 -197358495 - AluJo SINE Alu -15 297 1 935 240 53 0 chr3 20679346 20679554 -197357604 - MER58A DNA MER1_type -1 223 5 2283 83 4 0 chr3 20680110 20680388 -197356770 + AluSq SINE Alu 17 295 -18 3152 107 43 14 chr3 20680415 20680525 -197356633 + L1MB3 LINE L1 5677 5782 -401 2016 151 7 3 chr3 20680525 20680824 -197356334 + AluJb SINE Alu 1 300 -12 3152 107 43 14 chr3 20680824 20681199 -197355959 + L1MB3 LINE L1 5782 6176 -7 922 242 278 0 chr3 20682183 20682546 -197354612 - L2 LINE L2 -27 3286 2823 227 134 60 75 chr3 20682548 20682615 -197354543 + L2 LINE L2 3207 3272 0 1538 152 63 40 chr3 20683395 20683769 -197353389 - AluJo SINE Alu 0 381 1 464 196 20 39 chr3 20683938 20684040 -197353118 + MER5A DNA MER1_type 14 113 -76 217 319 81 16 chr3 20684537 20684722 -197352436 - L2 LINE L2 -228 3044 2848 273 298 61 8 chr3 20685800 20685931 -197351227 - L2 LINE L2 -189 3083 2946 1716 151 95 0 chr3 20685998 20686283 -197350875 + AluJo SINE Alu 1 312 0 2202 195 109 10 chr3 20686546 20687060 -197350098 - L1MD2 LINE L1 -268 6091 5527 877 59 67 0 chr3 20687060 20687179 -197349979 + MLT2D LTR ERVL 1 127 -287 753 179 0 0 chr3 20687183 20687295 -197349863 + FLAM_A SINE Alu 4 115 -27 1657 148 13 52 chr3 20687312 20687445 -197349713 + MLT2C2 LTR ERVL 115 252 -212 1994 160 0 6 chr3 20687445 20687757 -197349401 + AluJb SINE Alu 1 310 -2 1657 148 13 52 chr3 20687757 20687928 -197349230 + MLT2C2 LTR ERVL 252 407 -57 235 202 8 48 chr3 20687961 20688085 -197349073 + CT-rich Low_complexity Low_complexity 1 119 0 225 100 0 0 chr3 20688122 20688152 -197349006 + MLT2C2 LTR ERVL 433 462 -2 233 188 0 0 chr3 20688190 20688254 -197348904 + L1MC4 LINE L1 6640 6703 -1339 296 203 27 0 chr3 20688254 20688328 -197348830 + (TATG)n Simple_repeat Simple_repeat 2 77 0 466 122 265 0 chr3 20688341 20688439 -197348719 - AluJb SINE Alu -178 134 11 2532 182 18 27 chr3 20688458 20688540 -197348618 - L1MD2 LINE L1 -743 5403 5322 2377 100 3 3 chr3 20688540 20688851 -197348307 - AluSp SINE Alu -2 311 1 2532 182 18 27 chr3 20688851 20689539 -197347619 - L1MD2 LINE L1 -824 5322 4745 7977 128 39 32 chr3 20689539 20689697 -197347461 - Tigger2 DNA MER2_type -1 2717 2562 1835 178 3 19 chr3 20689697 20690012 -197347146 - AluJo SINE Alu -2 310 1 7977 128 39 32 chr3 20690012 20690116 -197347042 - Tigger2 DNA MER2_type -156 2562 2460 2348 107 0 0 chr3 20690116 20690416 -197346742 + AluSc SINE Alu 1 300 -9 7977 128 39 32 chr3 20690416 20691514 -197345644 - Tigger2 DNA MER2_type -258 2460 1347 520 259 26 0 chr3 20691514 20691630 -197345528 - FLAM_C SINE Alu -23 120 2 1136 159 150 35 chr3 20691680 20691907 -197345251 - AluJo SINE Alu -24 288 36 548 154 0 11 chr3 20691913 20692004 -197345154 - L1MC1 LINE L1 -13 6320 6231 358 165 3 75 chr3 20692007 20692154 -197345004 - L1M LINE L1 -772 5412 4611 1673 141 12 4 chr3 20692160 20692408 -197344750 + AluJo SINE Alu 25 274 -38 4223 229 92 35 chr3 20692410 20692655 -197344503 - L1MD2 LINE L1 -1696 4450 4221 1967 166 0 3 chr3 20692655 20692963 -197344195 + AluJb SINE Alu 1 307 -5 4223 229 92 35 chr3 20692963 20694214 -197342944 - L1MD2 LINE L1 -1925 4221 2868 1164 241 93 59 chr3 20694358 20694995 -197342163 - L1ME3A LINE L1 -326 5844 5159 2182 113 0 3 chr3 20694995 20695286 -197341872 - AluSx SINE Alu -22 290 1 1164 241 93 59 chr3 20695286 20695445 -197341713 - L1ME3A LINE L1 -1011 5159 5007 831 141 0 83 chr3 20695447 20695603 -197341555 - FLAM_C SINE Alu 0 143 1 590 285 62 10 chr3 20695616 20695904 -197341254 - L1ME3A LINE L1 -1147 4999 4697 225 116 0 70 chr3 20695974 20696017 -197341141 + LTR62 LTR ERVK 614 653 -66 911 142 18 138 chr3 20696156 20696302 -197340856 - L1PA16 LINE L1 0 6156 5994 2423 96 0 0 chr3 20696302 20696604 -197340554 - AluSx SINE Alu -10 302 1 911 142 18 138 chr3 20696604 20696688 -197340470 - L1PA16 LINE L1 -162 5994 5901 9605 47 103 3 chr3 20696688 20697892 -197339266 - SVA Other Other -5 1381 58 258 32 0 0 chr3 20697892 20697923 -197339235 + (AGGGGG)n Simple_repeat Simple_repeat 3 33 0 911 142 18 138 chr3 20697923 20697986 -197339172 - L1PA16 LINE L1 -252 5904 5904 752 300 93 29 chr3 20698231 20698877 -197338281 + L2 LINE L2 2001 2687 -627 1879 85 0 0 chr3 20698927 20699163 -197337995 - AluY SINE Alu -16 295 60 2333 100 0 3 chr3 20699324 20699625 -197337533 + AluSc SINE Alu 1 300 -9 21 0 0 0 chr3 20699766 20699787 -197337371 + AT_rich Low_complexity Low_complexity 1 21 0 278 213 0 0 chr3 20700641 20700688 -197336470 - AluJb SINE Alu -185 117 71 250 250 19 0 chr3 20700673 20700725 -197336433 - AluSp SINE Alu -115 188 136 * 895 141 60 148 chr3 20700731 20700819 -197336339 - L1MD2 LINE L1 0 6359 6265 2626 56 0 0 chr3 20700819 20701122 -197336036 - AluY SINE Alu -8 303 1 1687 192 0 32 chr3 20701125 20701433 -197335725 - AluJo SINE Alu -10 302 5 895 141 60 148 chr3 20701433 20701624 -197335534 - L1MD2 LINE L1 -96 6263 6101 496 297 26 31 chr3 20701727 20701922 -197335236 + MIR SINE MIR 57 250 -12 1167 196 159 4 chr3 20701947 20702212 -197334946 - AluJo SINE Alu 0 304 2 777 143 0 8 chr3 20702413 20702546 -197334612 - FLAM_C SINE Alu 0 133 2 512 284 101 0 chr3 20702606 20702775 -197334383 - L3 LINE CR1 -292 1285 1100 718 279 156 32 chr3 20702935 20703601 -197333557 + HAL1 LINE L1 7 782 -1725 1817 224 87 34 chr3 20703604 20704250 -197332908 + HAL1 LINE L1 840 1519 -988 751 158 8 0 chr3 20704256 20704376 -197332782 + FLAM_C SINE Alu 2 122 -21 300 111 0 0 chr3 20704376 20704421 -197332737 + (TA)n Simple_repeat Simple_repeat 1 45 0 228 209 22 44 chr3 20704426 20704517 -197332641 + L1MC4 LINE L1 6615 6703 -1339 270 176 0 0 chr3 20704520 20704571 -197332587 + (TA)n Simple_repeat Simple_repeat 2 52 0 237 287 0 0 chr3 20704577 20704664 -197332494 + L1MC4 LINE L1 6614 6700 -1342 311 322 0 0 chr3 20704667 20704757 -197332401 + L1MC4 LINE L1 6614 6703 -1339 * 318 311 0 0 chr3 20704677 20704767 -197332391 - L1MC4 LINE L1 -1339 6703 6614 707 184 0 0 chr3 20704807 20704921 -197332237 + FLAM_A SINE Alu 16 129 -13 805 240 96 52 chr3 20704921 20705082 -197332076 + HAL1 LINE L1 1527 1706 -801 2101 122 3 3 chr3 20705082 20705378 -197331780 - AluSq SINE Alu -17 296 1 805 240 96 52 chr3 20705378 20705487 -197331671 + HAL1 LINE L1 1706 1809 -698 633 238 65 9 chr3 20705576 20705790 -197331368 + HAL1 LINE L1 2049 2274 -233 893 216 113 56 chr3 20705802 20705851 -197331307 - MLT1F LTR MaLR 0 593 548 1702 118 75 25 chr3 20705851 20706131 -197331027 - AluSx SINE Alu -18 294 1 893 216 113 56 chr3 20706131 20706550 -197330608 - MLT1F LTR MaLR -45 548 1 358 259 109 109 chr3 20706553 20706727 -197330431 + HAL1 LINE L1 2285 2458 -49 1199 166 0 37 chr3 20708143 20708360 -197328798 + MER3 DNA MER1_type 1 209 0 195 358 104 0 chr3 20708385 20708452 -197328706 - MIR SINE MIR -64 144 71 1630 165 44 34 chr3 20708600 20708897 -197328261 + AluJb SINE Alu 1 300 -12 191 325 50 12 chr3 20709020 20709100 -197328058 - L2 LINE L2 -5 3308 3226 926 127 0 15 chr3 20709153 20709287 -197327871 - AluSq SINE Alu -33 280 149 2137 113 0 11 chr3 20709291 20709614 -197327544 - AluSx SINE Alu 0 320 1 815 244 169 12 chr3 20709648 20710012 -197327146 - L2 LINE L2 -147 3166 2750 339 335 72 20 chr3 20710071 20710223 -197326935 + L1ME4a LINE L1 5714 5873 -248 1708 154 52 11 chr3 20711045 20711340 -197325818 - AluSg SINE Alu 0 306 1 519 60 0 0 chr3 20712242 20712309 -197324849 + (T)n Simple_repeat Simple_repeat 1 67 0 1498 200 33 26 chr3 20712536 20712841 -197324317 + AluJo SINE Alu 1 307 -5 2464 68 0 37 chr3 20713159 20713481 -197323677 - AluY SINE Alu -1 310 1 1192 111 12 0 chr3 20713749 20713920 -197323238 - AluSg/x SINE Alu -7 305 133 2370 115 0 0 chr3 20713920 20714232 -197322926 - AluSx SINE Alu 0 312 1 2361 94 0 10 chr3 20714620 20714927 -197322231 + AluSq SINE Alu 1 304 -9 2238 121 0 0 chr3 20714941 20715248 -197321910 + AluSx SINE Alu 1 307 -5 1567 181 48 48 chr3 20716067 20716377 -197320781 + AluJo SINE Alu 1 310 -2 256 307 61 26 chr3 20716422 20716536 -197320622 - MIR SINE MIR -88 174 57 208 307 95 49 chr3 20716585 20716790 -197320368 + MIR SINE MIR 34 256 -6 1847 137 18 11 chr3 20716858 20717142 -197320016 + AluJb SINE Alu 27 312 0 2558 74 0 0 chr3 20717202 20717513 -197319645 - AluY SINE Alu 0 311 1 192 288 68 14 chr3 20717740 20717813 -197319345 - MIR3 SINE MIR -29 179 103 230 196 201 59 chr3 20718198 20718299 -197318859 - L1ME4a LINE L1 -175 5946 5861 1744 151 97 0 chr3 20718299 20718578 -197318580 - AluJb SINE Alu -6 306 1 230 196 201 59 chr3 20718578 20718695 -197318463 - L1ME4a LINE L1 -260 5861 5697 2247 120 0 3 chr3 20718717 20719018 -197318140 - AluSx SINE Alu -12 300 1 1180 262 119 32 chr3 20719019 20719108 -197318050 - L2 LINE L2 -1515 1799 1719 2012 135 7 16 chr3 20719108 20719412 -197317746 - AluSx SINE Alu -11 301 1 2468 95 0 0 chr3 20719412 20719718 -197317440 - AluSx SINE Alu -6 306 1 1180 262 119 32 chr3 20719718 20720053 -197317105 - L2 LINE L2 -1595 1719 1333 1829 155 13 28 chr3 20720053 20720370 -197316788 + AluSx SINE Alu 1 312 0 180 316 102 49 chr3 20720628 20720872 -197316286 - L2 LINE L2 -173 3099 2843 535 264 75 29 chr3 20722974 20723148 -197314010 - MIR3 SINE MIR -4 204 23 2330 125 0 0 chr3 20723480 20723793 -197313365 - AluSq SINE Alu 0 313 1 338 293 204 0 chr3 20724027 20724184 -197312974 - MIR SINE MIR -13 249 61 2291 105 0 3 chr3 20726525 20726821 -197310337 + AluSx SINE Alu 1 295 -17 1950 156 16 3 chr3 20727198 20727505 -197309653 + AluJo SINE Alu 1 311 -1 205 324 58 72 chr3 20727638 20727765 -197309393 - L2 LINE L2 -11 3261 3135 1656 158 59 7 chr3 20727765 20728037 -197309121 + AluJo SINE Alu 1 286 -26 205 324 58 72 chr3 20728037 20728048 -197309110 - L2 LINE L2 -137 3135 3125 368 256 39 62 chr3 20729019 20729148 -197308010 - MER103 DNA DNA 0 166 41 1769 148 0 79 chr3 20729760 20730090 -197307068 + AluJo SINE Alu 1 304 -8 301 299 142 15 chr3 20731223 20731357 -197305801 + MIR3 SINE MIR 17 167 -41 340 305 52 46 chr3 20735169 20735343 -197301815 - MER5A DNA MER1_type -1 188 14 266 313 140 18 chr3 20735575 20735741 -197301417 - MIR SINE MIR -49 213 30 1542 162 0 0 chr3 20736182 20736416 -197300742 - AluJo SINE Alu -78 234 1 5617 204 70 46 chr3 20736804 20737770 -197299388 - L1MB8 LINE L1 0 6178 5237 2469 75 10 0 chr3 20737770 20738076 -197299082 - AluSc SINE Alu 0 309 1 5617 204 70 46 chr3 20738076 20739757 -197297401 - L1MB8 LINE L1 -941 5237 3476 744 248 130 90 chr3 20740134 20740427 -197296731 + L2 LINE L2 2307 2624 -690 2275 97 0 29 chr3 20740427 20740735 -197296423 + AluSg SINE Alu 1 299 -11 744 248 130 90 chr3 20740735 20740873 -197296285 + L2 LINE L2 2624 2755 -559 2422 87 7 3 chr3 20741025 20741334 -197295824 - AluSx SINE Alu -2 310 1 257 222 28 42 chr3 20741355 20741427 -197295731 - L2 LINE L2 -44 3269 3199 2270 124 0 0 chr3 20741774 20742073 -197295085 - AluSx SINE Alu -13 299 1 247 234 0 0 chr3 20742178 20742225 -197294933 + MER5A DNA MER1_type 9 55 -134 1068 152 24 0 chr3 20742669 20742834 -197294324 + AluJo SINE Alu 1 169 -143 492 230 75 11 chr3 20743359 20743533 -197293625 - L2 LINE L2 -189 3083 2899 205 133 0 0 chr3 20744250 20744280 -197292878 - MIR SINE MIR -118 144 115 1746 148 4 0 chr3 20744853 20745158 -197292000 - AluJb SINE Alu 0 316 11 304 172 203 0 chr3 20745506 20745570 -197291588 - MIR SINE MIR -109 153 77 2657 153 19 19 chr3 20745709 20746135 -197291023 + MSTB LTR MaLR 1 426 0 7000 151 59 40 chr3 20746135 20746242 -197290916 + MSTB-int LTR MaLR 1 104 -1547 2131 129 3 3 chr3 20746242 20746536 -197290622 + AluSx SINE Alu 1 294 -18 7000 151 59 40 chr3 20746536 20746899 -197290259 + MSTB-int LTR MaLR 104 458 -1193 2108 146 0 13 chr3 20746899 20747214 -197289944 - AluSq SINE Alu 0 313 3 7000 151 59 40 chr3 20747214 20748060 -197289098 + MSTB-int LTR MaLR 458 1344 -307 249 96 0 0 chr3 20748060 20748098 -197289060 + AluSx SINE Alu 1 34 -268 1535 199 181 24 chr3 20748107 20748570 -197288588 - LTR10A LTR ERV1 -61 548 13 2152 103 0 14 chr3 20748574 20748685 -197288473 + AluSx SINE Alu 26 137 -175 2310 105 0 10 chr3 20748685 20748991 -197288167 + AluSq SINE Alu 1 303 -10 2152 103 0 14 chr3 20748991 20749161 -197287997 + AluSx SINE Alu 137 303 -9 1564 89 13 188 chr3 20749161 20749363 -197287795 + MSTB-int LTR MaLR 1336 1572 -79 1762 82 0 0 chr3 20749363 20749582 -197287576 - AluSg/x SINE Alu -9 301 83 1564 89 13 188 chr3 20749582 20749675 -197287483 + MSTB-int LTR MaLR 1572 1680 29 1954 155 0 7 chr3 20749675 20749971 -197287187 + AluJb SINE Alu 1 294 -18 2220 105 0 56 chr3 20749974 20750298 -197286860 + AluSq SINE Alu 1 306 -7 1564 89 13 188 chr3 20750298 20750380 -197286778 + MSTB-int LTR MaLR 1556 1651 0 2660 160 17 0 chr3 20750380 20750799 -197286359 + MSTB LTR MaLR 1 426 0 206 246 77 15 chr3 20750799 20750864 -197286294 + MIR3 SINE MIR 99 167 -41 1054 209 22 13 chr3 20751560 20751785 -197285373 + AluJo SINE Alu 1 227 -85 967 160 51 6 chr3 20752274 20752430 -197284728 - AluJo SINE Alu -149 163 1 2418 100 0 0 chr3 20752433 20752743 -197284415 - AluSx SINE Alu -2 310 1 2401 63 0 7 chr3 20752807 20753108 -197284050 + AluY SINE Alu 1 299 -12 196 111 0 56 chr3 20753238 20753274 -197283884 - MIR SINE MIR -112 150 117 4007 154 70 42 chr3 20753285 20753941 -197283217 - L1MB7 LINE L1 0 6184 5547 1802 150 27 31 chr3 20753941 20754235 -197282923 - AluJo SINE Alu -19 293 1 4007 154 70 42 chr3 20754235 20754424 -197282734 - L1MB7 LINE L1 -637 5547 5312 1972 140 21 0 chr3 20754424 20754710 -197282448 - AluSx SINE Alu -20 292 1 4007 154 70 42 chr3 20754710 20754741 -197282417 - L1MB7 LINE L1 -872 5312 5283 200 236 0 36 chr3 20754893 20754948 -197282210 - MIR SINE MIR -112 150 98 2040 142 23 3 chr3 20754948 20755251 -197281907 + AluJo SINE Alu 1 309 -3 2328 112 0 0 chr3 20755255 20755559 -197281599 + AluSx SINE Alu 1 304 -8 258 328 151 8 chr3 20755584 20755822 -197281336 + L3 LINE CR1 1166 1437 -140 2419 75 0 13 chr3 20756109 20756459 -197280699 - AluSq SINE Alu 0 356 11 296 24 0 24 chr3 20756460 20756502 -197280656 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 298 262 13 27 chr3 20756502 20756604 -197280554 + CT-rich Low_complexity Low_complexity 3 180 0 * 611 239 39 0 chr3 20756583 20756713 -197280445 - AluJb SINE Alu 0 312 178 1628 195 17 7 chr3 20756605 20756892 -197280266 - AluJo SINE Alu -22 290 1 1764 98 12 12 chr3 20757042 20757286 -197279872 + AluSx SINE Alu 50 293 -19 744 129 32 0 chr3 20757286 20757410 -197279748 + Tigger1 DNA MER2_type 484 611 -1807 1808 174 44 49 chr3 20757412 20757544 -197279614 - L1M4c LINE L1 -5605 1041 910 1986 160 3 0 chr3 20757544 20757844 -197279314 - AluJb SINE Alu -11 301 1 1808 174 44 49 chr3 20757844 20758118 -197279040 - L1M4c LINE L1 -5736 910 637 355 246 53 9 chr3 20758218 20758332 -197278826 + L1M4c LINE L1 1667 1785 -4599 1946 156 0 31 chr3 20758344 20758520 -197278638 - AluJb SINE Alu -2 310 147 2308 97 3 31 chr3 20758520 20758841 -197278317 - AluSp SINE Alu -1 312 1 1946 156 0 31 chr3 20758841 20758984 -197278174 - AluJb SINE Alu -165 147 1 325 167 83 42 chr3 20758984 20759056 -197278102 - L1M4c LINE L1 -6465 77 3 622 225 62 0 chr3 20759085 20759214 -197277944 - AluJo SINE Alu -175 137 1 323 178 47 116 chr3 20759376 20759419 -197277739 - L1M4c LINE L1 -4688 1696 1652 2300 95 3 3 chr3 20759419 20759724 -197277434 - AluY SINE Alu -6 305 1 323 178 47 116 chr3 20759724 20759767 -197277391 - L1M4c LINE L1 -4732 1652 1619 1931 158 7 10 chr3 20759767 20760077 -197277081 - AluJo SINE Alu -3 309 1 323 178 47 116 chr3 20760077 20760118 -197277040 - L1M4c LINE L1 -4765 1619 1577 2400 84 10 0 chr3 20760122 20760418 -197276740 - AluSx SINE Alu -13 299 1 2018 112 7 7 chr3 20760680 20760966 -197276192 + AluSg SINE Alu 1 286 -24 736 240 51 39 chr3 20760978 20761232 -197275926 + L2 LINE L2 2905 3161 -152 1378 151 77 5 chr3 20761232 20761595 -197275563 - LTR65 LTR ERV1 0 669 224 1629 152 74 115 chr3 20761610 20762096 -197275062 + MER90 LTR ERV1 72 537 -77 1123 173 4 67 chr3 20762196 20762272 -197274886 - AluJb SINE Alu -101 211 132 2387 73 0 10 chr3 20762272 20762572 -197274586 - AluY SINE Alu -14 297 1 1123 173 4 67 chr3 20762572 20762720 -197274438 - AluJb SINE Alu -180 132 1 2338 117 0 0 chr3 20762751 20763050 -197274108 - AluSg SINE Alu -10 300 2 2078 138 17 0 chr3 20763114 20763411 -197273747 - AluSg SINE Alu -7 303 2 321 195 23 11 chr3 20763414 20763501 -197273657 - L1M4 LINE L1 -842 5304 5217 439 20 0 0 chr3 20763634 20763685 -197273473 + AluY SINE Alu 6 56 -254 983 172 10 66 chr3 20763785 20763813 -197273345 + AluSg/x SINE Alu 117 145 -167 2568 54 0 0 chr3 20763813 20764110 -197273048 + AluY SINE Alu 1 297 -14 983 172 10 66 chr3 20764110 20764279 -197272879 + AluSg/x SINE Alu 145 303 -9 352 173 86 0 chr3 20764289 20764370 -197272788 - L1ME LINE L1 -468 5702 5615 443 200 0 21 chr3 20764401 20764496 -197272662 + MER69 DNA AcHobo 2432 2524 -2 322 240 89 24 chr3 20764655 20764787 -197272371 + LTR33A LTR ERVL 50 155 -368 1754 128 4 0 chr3 20765587 20765838 -197271320 - AluSx SINE Alu -19 293 42 1543 273 61 25 chr3 20765846 20766444 -197270714 + L1M4 LINE L1 3622 4250 -1896 1737 162 3 11 chr3 20766444 20766728 -197270430 + AluJo SINE Alu 27 308 -4 1543 273 61 25 chr3 20766728 20766822 -197270336 + L1M4 LINE L1 4250 4339 -1807 792 214 21 16 chr3 20766873 20767065 -197270093 + AluJo SINE Alu 120 312 0 1987 76 0 0 chr3 20767072 20767308 -197269850 + AluSq SINE Alu 1 236 -77 466 231 85 8 chr3 20767371 20767501 -197269657 - L1ME1 LINE L1 -253 5913 5774 224 58 13 142 chr3 20767604 20767759 -197269399 + (TA)n Simple_repeat Simple_repeat 2 136 0 305 116 14 82 chr3 20767828 20767974 -197269184 + (TA)n Simple_repeat Simple_repeat 1 136 0 2141 116 0 0 chr3 20767974 20768259 -197268899 - AluSx SINE Alu -27 285 1 1221 148 76 17 chr3 20768290 20768526 -197268632 + AluJo SINE Alu 41 290 -22 1018 183 0 0 chr3 20768852 20769021 -197268137 + AluJo SINE Alu 127 295 -17 2404 105 0 10 chr3 20769023 20769337 -197267821 + AluSx SINE Alu 1 311 -1 2328 64 7 7 chr3 20769337 20769645 -197267513 + AluY SINE Alu 1 308 0 279 71 0 214 chr3 20771143 20771195 -197265963 + AluJ/FRAM SINE Alu 232 261 -41 1988 141 18 0 chr3 20771195 20771479 -197265679 - AluSx SINE Alu -23 289 1 279 71 0 214 chr3 20771479 20771510 -197265648 + AluJ/FRAM SINE Alu 261 297 -5 2129 180 45 47 chr3 20771510 20771613 -197265545 + L1MB8 LINE L1 5325 5427 -757 2267 106 0 0 chr3 20771613 20771905 -197265253 + AluSg SINE Alu 1 292 -18 2129 180 45 47 chr3 20771905 20772085 -197265073 + L1MB8 LINE L1 5427 5606 -578 1903 129 18 7 chr3 20772085 20772398 -197264760 + AluSx SINE Alu 1 316 0 2129 180 45 47 chr3 20772398 20772473 -197264685 + L1MB8 LINE L1 5606 5680 -504 2132 215 11 9 chr3 20772473 20772915 -197264243 + LTR47B LTR ERVL 1 443 0 2129 180 45 47 chr3 20772915 20773104 -197264054 + L1MB8 LINE L1 5680 5874 -310 943 158 0 7 chr3 20773108 20773247 -197263911 + FAM SINE Alu 13 150 -35 1982 121 0 7 chr3 20773276 20773549 -197263609 + AluSx SINE Alu 1 271 -41 389 311 0 0 chr3 20773556 20773646 -197263512 - L1MC4 LINE L1 -1339 6703 6614 * 395 296 0 0 chr3 20773575 20773663 -197263495 + L1MC4 LINE L1 6615 6702 -1340 539 221 135 0 chr3 20773705 20773922 -197263236 + L1MB8 LINE L1 5902 6166 -17 575 257 47 69 chr3 20773963 20774239 -197262919 - MLT1I LTR MaLR -28 381 112 2333 124 0 0 chr3 20774515 20774821 -197262337 - AluSx SINE Alu -6 306 1 2391 109 0 0 chr3 20774821 20775124 -197262034 - AluSx SINE Alu -8 304 2 381 294 5 64 chr3 20775125 20775312 -197261846 - L1MCc LINE L1 -5578 845 670 1316 151 22 30 chr3 20775588 20775820 -197261338 - AluJb SINE Alu 0 312 83 996 271 57 8 chr3 20775823 20776189 -197260969 - L1MCc LINE L1 -5999 424 41 305 300 58 9 chr3 20776224 20776486 -197260672 + L1M4 LINE L1 5120 5399 -747 1868 162 10 3 chr3 20776486 20776776 -197260382 + AluJo SINE Alu 3 294 -18 2241 121 0 0 chr3 20776951 20777241 -197259917 + AluSx SINE Alu 1 290 -22 393 236 136 61 chr3 20777309 20777573 -197259585 + L1MCb LINE L1 973 1248 -4856 1798 180 0 7 chr3 20777587 20777876 -197259282 + AluJo SINE Alu 1 287 -25 1127 216 98 36 chr3 20777900 20778057 -197259101 + L1MCb LINE L1 2767 2913 -3651 2413 60 0 17 chr3 20778057 20778358 -197258800 + AluY SINE Alu 1 296 -15 1127 216 98 36 chr3 20778358 20778588 -197258570 + L1MCb LINE L1 2913 3178 -3386 889 196 0 7 chr3 20778588 20778741 -197258417 + FRAM SINE Alu 1 146 -30 550 209 37 52 chr3 20778772 20778963 -197258195 + L1MCb LINE L1 3189 3376 -3188 1596 168 0 93 chr3 20778963 20779296 -197257862 + AluJb SINE Alu 1 302 0 1512 109 52 0 chr3 20779361 20779571 -197257587 + AluSc SINE Alu 83 303 -6 1559 167 4 4 chr3 20779572 20779824 -197257334 + AluJo SINE Alu 25 276 -36 1350 22 11 17 chr3 20779839 20780018 -197257140 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 287 175 0 16 chr3 20780027 20780090 -197257068 + GA-rich Low_complexity Low_complexity 2 63 0 669 158 17 85 chr3 20780096 20780227 -197256931 + L1ME LINE L1 5358 5476 -690 2390 91 0 3 chr3 20780227 20780523 -197256635 + AluSq SINE Alu 3 297 -16 669 158 17 85 chr3 20780523 20780568 -197256590 + L1ME LINE L1 5476 5522 -644 699 98 0 10 chr3 20780674 20780776 -197256382 + AluSg/x SINE Alu 206 306 -4 2337 105 0 0 chr3 20780786 20781081 -197256077 + AluSx SINE Alu 1 295 -17 631 157 56 0 chr3 20781092 20781200 -197255958 + AluJb SINE Alu 177 290 -22 2270 109 10 0 chr3 20781216 20781518 -197255640 - AluSx SINE Alu -5 307 3 4785 220 71 67 chr3 20781518 20781570 -197255588 - L1M4b LINE L1 -5253 1606 1556 1906 170 0 13 chr3 20781570 20781876 -197255282 - AluJb SINE Alu -10 302 1 4785 220 71 67 chr3 20781876 20782483 -197254675 - L1M4b LINE L1 -5303 1556 953 2285 119 7 0 chr3 20782483 20782793 -197254365 - AluSx SINE Alu 0 312 1 4785 220 71 67 chr3 20782793 20783626 -197253532 - L1M4b LINE L1 -5906 953 107 180 0 0 0 chr3 20783626 20783646 -197253512 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2257 89 25 0 chr3 20783649 20783931 -197253227 - AluSx SINE Alu -23 289 1 972 185 0 0 chr3 20783935 20784092 -197253066 - FRAM SINE Alu -19 157 1 531 111 0 0 chr3 20784232 20784304 -197252854 + AluS SINE Alu 2 73 -240 222 270 48 0 chr3 20784304 20784367 -197252791 + L2 LINE L2 3242 3307 -6 1768 181 11 0 chr3 20784637 20784924 -197252234 - AluJb SINE Alu -8 304 15 461 289 132 18 chr3 20784953 20785226 -197251932 - LTR16A LTR ERVL -77 373 70 274 251 212 40 chr3 20785292 20785549 -197251609 - L2 LINE L2 -297 3016 2719 529 122 24 0 chr3 20785897 20785979 -197251179 + AluJ/FLAM SINE Alu 5 88 -224 596 180 108 0 chr3 20786079 20786190 -197250968 - FLAM_C SINE Alu -20 123 1 1525 150 0 0 chr3 20786263 20786483 -197250675 + AluSx SINE Alu 49 268 -44 2537 43 10 0 chr3 20786491 20786820 -197250338 + AluY SINE Alu 1 311 0 495 258 26 26 chr3 20788333 20788488 -197248670 - MIR3 SINE MIR 0 208 54 528 16 0 0 chr3 20788565 20788626 -197248532 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 1296 251 151 37 chr3 20788626 20788785 -197248373 - L2 LINE L2 -438 2876 2737 1740 201 10 0 chr3 20788785 20789083 -197248075 - AluJo SINE Alu -11 301 1 1296 251 151 37 chr3 20789083 20789309 -197247849 - L2 LINE L2 -577 2737 2538 2278 124 3 0 chr3 20789309 20789616 -197247542 + AluSq SINE Alu 1 308 -5 1296 251 151 37 chr3 20789616 20789746 -197247412 - L2 LINE L2 -776 2538 2301 1282 98 11 6 chr3 20789780 20789963 -197247195 - MER83-int LTR ERV1 -4089 196 13 3237 103 11 5 chr3 20789964 20790409 -197246749 - MER83 LTR ERV1 0 448 1 854 162 57 72 chr3 20790461 20790726 -197246432 + L1M4 LINE L1 4115 4375 -1771 3082 145 40 23 chr3 20790733 20791058 -197246100 + L1MC1 LINE L1 5523 5864 -469 2310 117 7 0 chr3 20791058 20791367 -197245791 + AluSx SINE Alu 1 311 -1 3082 145 40 23 chr3 20791367 20791614 -197245544 + L1MC1 LINE L1 5864 6105 -228 2110 138 0 0 chr3 20791614 20791910 -197245248 + AluJb SINE Alu 1 296 -16 189 0 0 0 chr3 20791913 20791934 -197245224 + (CA)n Simple_repeat Simple_repeat 2 22 0 987 150 31 171 chr3 20791934 20792007 -197245151 + L1M4 LINE L1 4378 4460 -1686 2333 105 3 0 chr3 20792007 20792302 -197244856 + AluSp SINE Alu 1 296 -17 987 150 31 171 chr3 20792302 20792406 -197244752 + L1M4 LINE L1 4460 4577 -1569 2425 55 3 14 chr3 20792406 20792698 -197244460 + AluY SINE Alu 10 298 -13 987 150 31 171 chr3 20792698 20792740 -197244418 + L1M4 LINE L1 4577 4623 -1523 2036 153 0 7 chr3 20792740 20793041 -197244117 + AluJb SINE Alu 1 299 -13 987 150 31 171 chr3 20793041 20793239 -197243919 + L1M4 LINE L1 4623 4738 -1408 761 150 0 8 chr3 20793260 20793380 -197243778 + AluJo/FLAM SINE Alu 8 126 -186 1066 426 28 3 chr3 20793382 20793695 -197243463 + AluY SINE Alu 2 321 0 1192 151 4 84 chr3 20793777 20794050 -197243108 + AluJb SINE Alu 64 312 0 2178 81 12 59 chr3 20794161 20794481 -197242677 + AluY SINE Alu 1 305 -6 269 268 14 0 chr3 20794498 20794569 -197242589 + MIR SINE MIR 156 227 -35 234 369 16 25 chr3 20794981 20795103 -197242055 + L3 LINE CR1 654 774 -803 555 265 94 26 chr3 20795319 20795651 -197241507 + MER115 DNA AcHobo 123 548 -145 451 332 46 76 chr3 20795840 20796301 -197240857 + L3 LINE CR1 1128 1574 -3 185 290 58 29 chr3 20796734 20796803 -197240355 + MIR3 SINE MIR 86 156 -52 239 328 188 0 chr3 20797396 20797524 -197239634 - L2 LINE L2 0 3313 3162 902 239 39 9 chr3 20797549 20797779 -197239379 + MIR SINE MIR 13 249 -13 2431 99 0 3 chr3 20797780 20798093 -197239065 - AluSx SINE Alu 0 312 1 590 315 98 31 chr3 20798233 20798560 -197238598 - MLT1L LTR MaLR -82 533 185 904 154 0 0 chr3 20798563 20798699 -197238459 + AluJo SINE Alu 1 136 -176 2064 112 14 10 chr3 20798708 20799026 -197238132 + AluSq SINE Alu 1 313 0 234 237 34 0 chr3 20799026 20799085 -197238073 - MLT1L LTR MaLR -423 192 132 665 296 40 10 chr3 20799195 20799394 -197237764 - L2 LINE L2 -257 3056 2852 629 169 63 14 chr3 20799655 20799797 -197237361 - MER3 DNA MER1_type -87 122 21 2138 152 3 0 chr3 20799859 20800169 -197236989 - AluSx SINE Alu -1 311 1 1812 123 0 0 chr3 20800309 20800561 -197236597 - AluSx SINE Alu -19 293 42 2098 99 3 27 chr3 20800724 20801016 -197236142 + AluSg SINE Alu 5 289 -21 257 257 76 100 chr3 20801909 20802119 -197235039 - L2 LINE L2 -127 3145 2941 1945 128 3 44 chr3 20802172 20802311 -197234847 + AluSq SINE Alu 1 144 -169 2416 86 0 7 chr3 20802311 20802614 -197234544 + AluSx SINE Alu 1 301 -11 1945 128 3 44 chr3 20802614 20802794 -197234364 + AluSq SINE Alu 144 307 -6 645 152 0 0 chr3 20803379 20803478 -197233680 + AluJo SINE Alu 36 134 -178 281 345 9 26 chr3 20804014 20804127 -197233031 - MIR SINE MIR -21 241 131 582 125 0 0 chr3 20804167 20804255 -197232903 + HY3 scRNA scRNA 11 98 -3 238 255 51 31 chr3 20804382 20804480 -197232678 - MIR3 SINE MIR -51 157 58 260 265 15 15 chr3 20805104 20805172 -197231986 - L2 LINE L2 -14 3299 3232 2349 96 0 22 chr3 20805203 20805516 -197231642 + AluSx SINE Alu 1 306 -6 1779 174 10 26 chr3 20805629 20805939 -197231219 + AluJb SINE Alu 1 305 -7 189 338 44 0 chr3 20806218 20806286 -197230872 - MIR SINE MIR -55 153 83 863 169 12 24 chr3 20806508 20806674 -197230484 - MER58B DNA MER1_type -11 330 167 2394 51 41 3 chr3 20806697 20806990 -197230168 + AluY SINE Alu 1 304 -7 1933 163 0 13 chr3 20807750 20808057 -197229101 + AluJb SINE Alu 1 303 -9 2266 103 10 0 chr3 20808061 20808362 -197228796 + AluSq SINE Alu 1 304 -9 1661 135 20 20 chr3 20808542 20808699 -197228459 - AluSx SINE Alu -17 295 139 198 0 0 0 chr3 20808699 20808721 -197228437 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2431 71 0 0 chr3 20808721 20809004 -197228154 - AluSp SINE Alu -30 283 1 1661 135 20 20 chr3 20809004 20809090 -197228068 - AluSx SINE Alu -171 141 51 6981 70 5 8 chr3 20809092 20810060 -197227098 - MER11C LTR ERVK 0 1071 18 441 143 29 0 chr3 20810060 20810130 -197227028 - AluS SINE Alu -245 73 2 243 326 91 46 chr3 20810139 20810213 -197226945 + MER5A DNA MER1_type 7 76 -113 2286 122 7 0 chr3 20810213 20810517 -197226641 + AluSq SINE Alu 1 306 -7 243 326 91 46 chr3 20810517 20810617 -197226541 + MER5A DNA MER1_type 76 189 0 939 128 0 0 chr3 20810647 20810780 -197226378 + FLAM_C SINE Alu 1 133 0 25 0 0 0 chr3 20811349 20811374 -197225784 + AT_rich Low_complexity Low_complexity 1 25 0 1061 139 0 0 chr3 20811389 20811540 -197225618 - AluSg/x SINE Alu -24 286 136 244 209 0 0 chr3 20811589 20811632 -197225526 - AluJ/monomer SINE Alu -259 44 2 781 257 23 0 chr3 20811637 20811851 -197225307 - L1M4 LINE L1 -2187 3959 3741 2494 87 0 0 chr3 20811887 20812197 -197224961 - AluY SINE Alu -1 310 1 1224 112 6 0 chr3 20812234 20812395 -197224763 - AluSx SINE Alu -150 162 1 2285 97 28 0 chr3 20812903 20813193 -197223965 - AluSc SINE Alu -11 298 1 1479 167 67 7 chr3 20813624 20813893 -197223265 - AluJo SINE Alu -27 285 1 327 263 0 12 chr3 20815012 20815092 -197222066 + MIR SINE MIR 68 146 -116 2011 78 3 57 chr3 20815386 20815682 -197221476 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr3 20815684 20815706 -197221452 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2389 77 0 3 chr3 20816125 20816425 -197220733 - AluSx SINE Alu -13 299 1 236 310 58 0 chr3 20817092 20817179 -197219979 - L2 LINE L2 -2 3311 3220 369 0 0 0 chr3 20817189 20817230 -197219928 + (TTA)n Simple_repeat Simple_repeat 2 42 0 488 35 0 0 chr3 20817233 20817291 -197219867 - AluSx SINE Alu -28 281 224 1661 128 0 4 chr3 20817392 20817619 -197219539 - AluSx SINE Alu -86 226 1 284 298 39 19 chr3 20818113 20818217 -197218941 + L2 LINE L2 3189 3294 -19 1069 56 0 0 chr3 20818708 20818833 -197218325 - AluSg/x SINE Alu -16 294 170 2376 86 3 13 chr3 20818835 20819139 -197218019 - AluSq SINE Alu -12 301 1 293 330 94 18 chr3 20819839 20820063 -197217095 + L1MEd LINE L1 565 805 -5314 194 359 29 19 chr3 20820333 20820436 -197216722 + L2 LINE L2 2946 3049 -223 333 257 68 0 chr3 20820446 20820520 -197216638 + L1MC4 LINE L1 6614 6692 -1350 2368 103 7 0 chr3 20820522 20820824 -197216334 - AluSx SINE Alu -8 304 1 2536 57 0 0 chr3 20820837 20821134 -197216024 - AluY SINE Alu -14 297 1 390 239 65 77 chr3 20821198 20821353 -197215805 + L2 LINE L2 3143 3295 -18 1743 178 0 3 chr3 20821353 20821645 -197215513 - 7SLRNA srpRNA srpRNA -7 313 23 1875 136 14 34 chr3 20821703 20821998 -197215160 - AluSx SINE Alu -23 289 1 2452 77 0 0 chr3 20822006 20822304 -197214854 - AluSc SINE Alu -11 298 1 1755 191 38 46 chr3 20822334 20822727 -197214431 + MLT1B LTR MaLR 1 390 0 1668 85 0 0 chr3 20822772 20823008 -197214150 + AluSg/x SINE Alu 83 318 0 1668 165 48 7 chr3 20823017 20823312 -197213846 + AluJb SINE Alu 1 306 0 1941 129 7 4 chr3 20824666 20824987 -197212171 - AluSx SINE Alu 0 327 6 1445 159 4 4 chr3 20828868 20829095 -197208063 + AluJb SINE Alu 1 227 -85 501 212 10 0 chr3 20829108 20829207 -197207951 - MER3 DNA MER1_type -109 100 1 183 219 24 0 chr3 20829217 20829258 -197207900 + MIR3 SINE MIR 166 207 -1 655 161 8 17 chr3 20829506 20829615 -197207543 + AluSg/x SINE Alu 185 294 -15 2111 142 0 3 chr3 20829615 20829924 -197207234 + AluSg SINE Alu 1 308 -2 2404 91 13 0 chr3 20829932 20830239 -197206919 + AluSx SINE Alu 1 311 -1 939 216 118 50 chr3 20830249 20830648 -197206510 - L1M4 LINE L1 -1542 4604 4179 * 1312 231 53 42 chr3 20830645 20831300 -197205858 - L1MDb LINE L1 -4959 1581 910 300 338 134 32 chr3 20831337 20831553 -197205605 - L1MDb LINE L1 -5573 957 720 316 342 30 43 chr3 20831830 20832131 -197205027 - L1MDb LINE L1 -6210 330 34 2283 114 0 0 chr3 20832207 20832505 -197204653 - AluSx SINE Alu -14 298 1 1670 170 67 3 chr3 20832719 20833001 -197204157 - AluJb SINE Alu -11 301 2 1656 190 13 20 chr3 20833054 20833354 -197203804 - AluJo SINE Alu -8 304 7 416 188 8 34 chr3 20833384 20833501 -197203657 - L1ME3A LINE L1 -18 6152 6039 2116 130 3 3 chr3 20833602 20833895 -197203263 - AluJb SINE Alu -9 303 11 354 344 151 5 chr3 20833995 20834270 -197202888 + L2 LINE L2 2748 3054 -218 710 167 0 0 chr3 20834467 20834575 -197202583 + FLAM_A SINE Alu 18 125 -17 706 176 30 0 chr3 20834794 20834925 -197202233 + MER5A DNA MER1_type 55 189 0 1526 185 3 28 chr3 20835028 20835315 -197201843 + AluJo SINE Alu 16 295 -17 994 122 0 34 chr3 20835468 20835615 -197201543 + FLAM_C SINE Alu 1 142 -1 391 296 80 23 chr3 20835757 20835933 -197201225 - MIR SINE MIR 0 262 77 2374 75 0 3 chr3 20836293 20836588 -197200570 + AluY SINE Alu 1 294 -17 201 39 0 0 chr3 20836623 20836649 -197200509 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1994 116 12 66 chr3 20836652 20836972 -197200186 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr3 20836977 20836999 -197200159 + AT_rich Low_complexity Low_complexity 1 22 0 507 294 83 53 chr3 20837038 20837249 -197199909 + L1M4 LINE L1 4023 4226 -1920 305 93 19 0 chr3 20837249 20837303 -197199855 + (TA)n Simple_repeat Simple_repeat 2 56 0 507 294 83 53 chr3 20837303 20837520 -197199638 + L1M4 LINE L1 4226 4435 -1711 2353 114 0 0 chr3 20837520 20837828 -197199330 + AluSx SINE Alu 1 308 -4 507 294 83 53 chr3 20837828 20838334 -197198824 + L1M4 LINE L1 4435 4992 -1154 1859 181 3 3 chr3 20838334 20838637 -197198521 + AluJb SINE Alu 7 309 -3 507 294 83 53 chr3 20838637 20838682 -197198476 + L1M4 LINE L1 4992 5034 -1112 2200 106 3 62 chr3 20838691 20839011 -197198147 + AluSx SINE Alu 1 301 -11 1112 82 7 0 chr3 20839112 20839247 -197197911 + AluSq/x SINE Alu 1 136 -176 180 294 52 96 chr3 20839595 20839731 -197197427 + L2 LINE L2 3137 3266 -6 2540 72 0 0 chr3 20839833 20840137 -197197021 + AluY SINE Alu 1 304 -7 1218 69 0 0 chr3 20840213 20840358 -197196800 + AluSq/x SINE Alu 1 145 -168 2260 95 14 0 chr3 20840358 20840653 -197196505 + AluSq SINE Alu 1 299 -14 2308 117 3 0 chr3 20841004 20841312 -197195846 - AluSq SINE Alu -4 309 1 5043 49 15 4 chr3 20841623 20842735 -197194423 - MER11A LTR ERVK 0 1266 1 2253 105 0 22 chr3 20842747 20843062 -197194096 - AluSg SINE Alu -1 309 2 270 303 131 14 chr3 20843734 20843879 -197193279 - MIR3 SINE MIR -18 190 29 2070 148 0 0 chr3 20843959 20844249 -197192909 + AluSx SINE Alu 1 290 -22 798 81 88 29 chr3 20844310 20844446 -197192712 - L1MB3 LINE L1 -9 6174 6031 1848 74 0 4 chr3 20844760 20844990 -197192168 + AluSq SINE Alu 84 312 -1 834 303 166 15 chr3 20845085 20845626 -197191532 + L2 LINE L2 2127 2749 -565 1915 119 19 47 chr3 20845626 20845946 -197191212 + AluSx SINE Alu 1 311 -1 379 235 59 0 chr3 20845946 20846031 -197191127 + L2 LINE L2 3214 3303 -10 1209 167 32 23 chr3 20846039 20846210 -197190948 - AluJb SINE Alu -5 307 132 2397 99 0 6 chr3 20846210 20846523 -197190635 - AluSx SINE Alu -1 311 1 1209 167 32 23 chr3 20846523 20846572 -197190586 - AluJb SINE Alu -180 132 85 2714 185 50 70 chr3 20846622 20847373 -197189785 + L1 LINE L1 3791 4556 -1590 1730 109 0 0 chr3 20847373 20847594 -197189564 - AluSg/x SINE Alu -7 305 85 2714 185 50 70 chr3 20847594 20847692 -197189466 + L1 LINE L1 4556 4655 -1491 1805 187 0 7 chr3 20847692 20847992 -197189166 + AluJo SINE Alu 1 298 -14 2714 185 50 70 chr3 20847992 20848060 -197189098 + L1 LINE L1 4655 4630 -1516 2361 100 7 7 chr3 20848060 20848369 -197188789 + AluSc SINE Alu 1 309 0 2714 185 50 70 chr3 20848369 20848506 -197188652 + L1 LINE L1 4629 4767 -1379 210 239 101 87 chr3 20848609 20848637 -197188521 + MIR SINE MIR 123 149 -113 2205 102 0 26 chr3 20848637 20848950 -197188208 + AluSx SINE Alu 1 305 -7 210 239 101 87 chr3 20848950 20849059 -197188099 + MIR SINE MIR 149 262 0 2331 94 0 17 chr3 20849296 20849594 -197187564 + AluSc SINE Alu 1 293 -16 2628 50 0 0 chr3 20849594 20849890 -197187268 + AluY SINE Alu 1 297 -14 256 310 65 60 chr3 20849909 20850109 -197187049 - MIR SINE MIR -49 213 13 268 282 134 40 chr3 20850223 20850462 -197186696 + MIR SINE MIR 2 262 0 231 36 0 0 chr3 20850509 20850537 -197186621 + (T)n Simple_repeat Simple_repeat 1 28 0 4460 73 9 4 chr3 20850544 20851105 -197186053 + LTR6A LTR ERV1 1 564 0 2108 112 4 0 chr3 20851105 20851383 -197185775 - AluSx SINE Alu -33 279 1 2515 62 0 10 chr3 20851399 20851704 -197185454 - AluY SINE Alu -9 302 1 1444 196 53 14 chr3 20851856 20852137 -197185021 + AluJo SINE Alu 1 292 -20 2586 172 99 68 chr3 20852147 20852212 -197184946 + LTR8A LTR ERV1 2 64 -663 2262 97 23 0 chr3 20852212 20852511 -197184647 - AluSp SINE Alu -7 306 1 2586 172 99 68 chr3 20852511 20852830 -197184328 + LTR8A LTR ERV1 64 372 -355 2583 77 0 0 chr3 20852830 20853141 -197184017 - AluY SINE Alu 0 311 1 2586 172 99 68 chr3 20853141 20853459 -197183699 + LTR8A LTR ERV1 372 727 0 1679 165 49 3 chr3 20853602 20853887 -197183271 + AluSx SINE Alu 1 298 -14 2082 120 3 20 chr3 20853888 20854187 -197182971 + AluSx SINE Alu 1 294 -18 1511 165 62 28 chr3 20854770 20855061 -197182097 + AluJo SINE Alu 5 305 -7 2525 65 0 40 chr3 20855065 20855388 -197181770 - AluY SINE Alu 0 311 2 231 331 81 15 chr3 20855922 20856058 -197181100 + MIR SINE MIR 117 261 -1 1387 128 22 13 chr3 20856259 20856486 -197180672 - AluJo SINE Alu -83 229 1 207 0 0 0 chr3 20856560 20856583 -197180575 + (CCCGG)n Simple_repeat Simple_repeat 4 26 0 258 116 0 0 chr3 20856800 20856843 -197180315 + (CCG)n Simple_repeat Simple_repeat 3 45 0 1910 131 0 7 chr3 20857848 20858154 -197179004 - AluJo SINE Alu -8 304 1 2376 71 0 0 chr3 20858372 20858683 -197178475 - AluY SINE Alu 0 311 1 226 318 47 0 chr3 20859097 20859182 -197177976 - MIR SINE MIR -108 154 66 387 336 68 32 chr3 20859317 20859537 -197177621 - MIR SINE MIR -16 246 19 2362 76 3 0 chr3 20859567 20859868 -197177290 - AluSp SINE Alu -11 302 1 374 228 84 30 chr3 20860139 20860182 -197176976 + Charlie7 DNA MER1_type 2400 2439 -173 2643 10 0 3 chr3 20860182 20860515 -197176643 - AluYb8 SINE Alu 0 332 1 1652 134 73 14 chr3 20860523 20860798 -197176360 - AluSx SINE Alu -11 301 11 374 228 84 30 chr3 20860798 20860946 -197176212 + Charlie7 DNA MER1_type 2445 2612 0 1204 103 0 6 chr3 20860996 20861161 -197175997 + AluSx SINE Alu 1 164 -148 22 0 0 0 chr3 20861406 20861428 -197175730 + AT_rich Low_complexity Low_complexity 1 22 0 321 256 68 83 chr3 20861541 20861674 -197175484 - L1MC5 LINE L1 -26 7935 7805 2180 97 7 3 chr3 20861786 20862085 -197175073 - AluSq SINE Alu -12 301 2 652 106 11 0 chr3 20862881 20862975 -197174183 - THE1B LTR MaLR -72 292 198 1816 147 27 3 chr3 20863008 20863301 -197173857 + AluSx SINE Alu 1 300 -12 1936 128 10 0 chr3 20863312 20863601 -197173557 - AluSx SINE Alu -20 292 1 669 164 0 0 chr3 20863601 20863723 -197173435 - L1MB4 LINE L1 -39 6141 6020 6815 46 7 1 chr3 20863725 20864913 -197172245 + L1PA5 LINE L1 4932 6126 -28 1883 178 38 99 chr3 20864915 20865040 -197172118 - L1MB4 LINE L1 -721 5462 5331 1731 174 16 10 chr3 20865040 20865344 -197171814 - AluJb SINE Alu -6 306 1 1883 178 38 99 chr3 20865344 20865545 -197171613 - L1MB4 LINE L1 -852 5331 5119 1707 172 3 28 chr3 20865545 20865864 -197171294 - AluJo SINE Alu -1 311 1 1883 178 38 99 chr3 20865864 20866199 -197170959 - L1MB4 LINE L1 -1064 5119 4810 353 140 0 0 chr3 20866308 20866358 -197170800 - Alu SINE Alu -252 50 1 777 158 84 91 chr3 20866362 20866520 -197170638 + L1MB5 LINE L1 4849 5006 -1140 1690 157 20 20 chr3 20866520 20866820 -197170338 - AluJo SINE Alu -12 300 1 777 158 84 91 chr3 20866820 20866946 -197170212 + L1MB5 LINE L1 5006 5131 -1015 2158 102 3 0 chr3 20867009 20867303 -197169855 + AluSg SINE Alu 1 295 -15 2129 110 3 3 chr3 20867307 20867606 -197169552 + AluSc SINE Alu 1 299 -10 1951 118 11 7 chr3 20867614 20867901 -197169257 + AluSx SINE Alu 5 292 -20 2145 105 10 3 chr3 20867936 20868240 -197168918 + AluSq SINE Alu 1 306 -7 855 155 18 12 chr3 20868241 20868409 -197168749 + L1MB5 LINE L1 5660 5828 -346 2009 109 39 0 chr3 20868409 20868693 -197168465 + AluSq SINE Alu 1 295 -18 1728 166 3 7 chr3 20868706 20869001 -197168157 + AluSx SINE Alu 1 294 -18 245 315 11 11 chr3 20869669 20869758 -197167400 - MLT1K LTR MaLR -496 92 4 330 26 0 0 chr3 20870165 20870204 -197166954 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 396 0 0 0 chr3 20870203 20870247 -197166911 + (TG)n Simple_repeat Simple_repeat 2 45 0 199 255 0 20 chr3 20871228 20871279 -197165879 + L3 LINE CR1 1518 1567 -10 711 148 90 0 chr3 20871476 20871598 -197165560 + FLAM_C SINE Alu 1 133 0 1101 186 9 36 chr3 20871982 20872202 -197164956 - AluJo SINE Alu -7 305 92 2276 96 0 0 chr3 20872281 20872584 -197164574 + AluSc SINE Alu 1 303 -6 1677 162 38 3 chr3 20872602 20872892 -197164266 - AluJb SINE Alu -12 300 1 2078 128 0 0 chr3 20874058 20874354 -197162804 - AluSx SINE Alu -16 296 1 489 163 0 0 chr3 20874359 20874439 -197162719 + Tigger5 DNA MER2_type 2244 2323 0 221 167 14 97 chr3 20874439 20874511 -197162647 + MIR SINE MIR 197 262 0 2231 89 0 16 chr3 20874646 20874949 -197162209 - AluSx SINE Alu -14 298 1 479 172 71 10 chr3 20874966 20875065 -197162093 - MER41B LTR ERV1 -88 547 443 2234 224 21 101 chr3 20875289 20875726 -197161432 + L1ME3 LINE L1 5327 5798 -364 1848 128 14 20 chr3 20875726 20876022 -197161136 - AluJb SINE Alu -18 294 1 2062 95 61 0 chr3 20876029 20876323 -197160835 - AluSp SINE Alu -1 312 1 2234 224 21 101 chr3 20876323 20876786 -197160372 + L1ME3 LINE L1 5804 6162 0 1861 143 19 10 chr3 20876823 20877131 -197160027 - AluJb SINE Alu -1 311 1 1655 168 14 7 chr3 20877422 20877714 -197159444 - AluJo SINE Alu -18 294 1 23 33 0 0 chr3 20877716 20877746 -197159412 + AT_rich Low_complexity Low_complexity 1 30 0 1139 123 0 6 chr3 20877795 20877957 -197159201 + AluSq SINE Alu 1 161 -152 456 19 0 0 chr3 20877962 20878015 -197159143 + (TG)n Simple_repeat Simple_repeat 2 54 0 192 186 116 0 chr3 20878175 20878218 -197158940 + L3 LINE CR1 1528 1575 -2 2178 100 3 0 chr3 20878634 20878925 -197158233 - AluSq SINE Alu -21 292 1 2140 107 0 7 chr3 20879594 20879894 -197157264 - AluSx SINE Alu -12 300 3 382 270 223 19 chr3 20880263 20880474 -197156684 - MLT1K LTR MaLR -5 583 330 907 148 59 24 chr3 20880649 20880818 -197156340 + FRAM SINE Alu 1 175 -1 1064 184 79 57 chr3 20881013 20881137 -197156021 + L1MC4 LINE L1 6860 6980 -805 2284 74 10 16 chr3 20881137 20881448 -197155710 - AluSc SINE Alu 0 309 1 1064 184 79 57 chr3 20881448 20882145 -197155013 + L1MC4 LINE L1 6980 7619 -166 333 164 30 0 chr3 20882146 20882213 -197154945 - L1MC3 LINE L1 -1608 6177 6109 237 349 79 16 chr3 20883428 20883554 -197153604 - MIR SINE MIR -108 154 21 871 194 11 6 chr3 20883623 20883798 -197153360 - MER58A DNA MER1_type -4 220 45 455 127 0 0 chr3 20883802 20883865 -197153293 + AluJo SINE Alu 84 146 -166 1196 144 88 48 chr3 20883865 20884115 -197153043 + AluJb SINE Alu 34 293 -19 557 235 30 62 chr3 20884193 20884426 -197152732 - LTR45 LTR ERV1 0 620 352 2287 45 10 3 chr3 20886745 20887065 -197150093 + AluY SINE Alu 1 311 0 240 310 18 9 chr3 20888223 20888336 -197148822 + (TG)n Simple_repeat Simple_repeat 2 115 0 1790 137 0 0 chr3 20889787 20890049 -197147109 + AluJb SINE Alu 1 262 -50 256 247 26 0 chr3 20894837 20894914 -197142244 + G-rich Low_complexity Low_complexity 2 80 0 205 200 17 26 chr3 20895589 20895704 -197141454 + C-rich Low_complexity Low_complexity 5 118 0 2828 0 0 0 chr3 20896615 20896925 -197140233 + AluYa5 SINE Alu 1 310 -1 545 178 50 0 chr3 20898087 20898188 -197138970 - MIR SINE MIR -53 209 104 216 67 0 0 chr3 20902857 20902887 -197134271 + (CTGGGG)n Simple_repeat Simple_repeat 6 35 0 24 0 0 0 chr3 20909109 20909133 -197128025 + AT_rich Low_complexity Low_complexity 1 24 0 1819 106 75 0 chr3 20909133 20909388 -197127770 - AluSg SINE Alu -36 274 1 837 161 15 0 chr3 20909461 20909591 -197127567 - AluJb SINE Alu -179 133 2 303 266 48 100 chr3 20909592 20909712 -197127446 + L1ME4a LINE L1 5616 5741 -380 1584 207 13 13 chr3 20909712 20910016 -197127142 + AluJo SINE Alu 1 304 -8 303 266 48 100 chr3 20910016 20910189 -197126969 + L1ME4a LINE L1 5741 5884 -237 2485 50 7 7 chr3 20910189 20910488 -197126670 + AluY SINE Alu 1 299 -12 1396 99 0 0 chr3 20910535 20910706 -197126452 + AluSx SINE Alu 1 171 -141 2115 127 0 0 chr3 20910846 20911149 -197126009 + AluSx SINE Alu 1 303 0 250 184 114 53 chr3 20911694 20911808 -197125350 + MER113 DNA MER1_type? 1 121 -400 2009 144 0 26 chr3 20911919 20912225 -197124933 + AluJb SINE Alu 1 298 -14 2387 67 3 0 chr3 20912225 20912553 -197124605 + AluY SINE Alu 1 329 0 2328 114 0 0 chr3 20912553 20912861 -197124297 + AluSp SINE Alu 2 309 -4 296 206 32 95 chr3 20913097 20913223 -197123935 - MIR3 SINE MIR -1 207 90 1791 163 31 0 chr3 20913316 20913610 -197123548 + AluJo SINE Alu 1 303 -9 229 278 14 14 chr3 20913615 20913687 -197123471 - MIR3 SINE MIR -48 160 89 2825 173 125 10 chr3 20913982 20914560 -197122598 + L1M4c LINE L1 8 651 -5733 1930 173 3 0 chr3 20914561 20914861 -197122297 + AluJb SINE Alu 1 301 -11 2791 113 27 44 chr3 20915145 20915581 -197121577 + Tigger1 DNA MER2_type 24 453 -1965 1466 174 10 69 chr3 20915581 20915886 -197121272 - AluJo SINE Alu -14 298 12 2791 113 27 44 chr3 20915886 20915925 -197121233 + Tigger1 DNA MER2_type 453 491 -1927 2242 126 0 3 chr3 20915936 20916238 -197120920 - AluSx SINE Alu -11 301 1 708 161 8 0 chr3 20917891 20918021 -197119137 + FLAM_C SINE Alu 1 131 -2 312 231 160 58 chr3 20918328 20918484 -197118674 + L1MC5 LINE L1 7349 7520 -441 1220 177 68 32 chr3 20918486 20918735 -197118423 + AluJb SINE Alu 1 258 -54 180 0 0 0 chr3 20918743 20918763 -197118395 + (TAA)n Simple_repeat Simple_repeat 2 21 0 333 288 64 8 chr3 20918876 20919001 -197118157 + L1MC4 LINE L1 7759 7890 -152 2253 127 0 0 chr3 20919077 20919384 -197117774 + AluSx SINE Alu 1 307 -5 1311 179 120 18 chr3 20919396 20919670 -197117488 + AluJo SINE Alu 3 304 -8 205 191 21 0 chr3 20919987 20920034 -197117124 + (CAA)n Simple_repeat Simple_repeat 1 48 0 1739 167 10 27 chr3 20920043 20920342 -197116816 + AluJo SINE Alu 1 294 -18 1791 184 7 0 chr3 20920344 20920632 -197116526 + AluJo SINE Alu 1 290 -22 787 250 52 35 chr3 20920994 20921236 -197115922 - MIR SINE MIR -14 248 7 1671 179 29 15 chr3 20921254 20921563 -197115595 - AluJo SINE Alu 0 317 5 535 165 0 10 chr3 20921567 20921664 -197115494 - FLAM_C SINE Alu -11 132 37 824 190 63 0 chr3 20922278 20922436 -197114722 - AluJo/FRAM SINE Alu -10 302 135 1829 104 0 0 chr3 20922436 20922667 -197114491 - AluSg/x SINE Alu -9 303 73 2541 66 0 3 chr3 20922667 20922971 -197114187 - AluY SINE Alu -7 304 1 1217 163 9 40 chr3 20922974 20923201 -197113957 - AluJo SINE Alu -92 220 1 198 233 41 55 chr3 20923211 20923284 -197113874 + MIR SINE MIR 124 195 -67 1974 111 49 59 chr3 20923360 20923565 -197113593 + L1MA3 LINE L1 5887 6088 -217 2235 113 3 0 chr3 20923565 20923865 -197113293 + AluSq SINE Alu 1 301 -12 1974 111 49 59 chr3 20923865 20924047 -197113111 + L1MA3 LINE L1 6088 6270 -35 270 26 0 0 chr3 20924042 20924080 -197113078 - L1MA1 LINE L1 -2 6300 6263 * 1219 195 25 12 chr3 20924086 20924327 -197112831 + AluJb SINE Alu 63 306 -6 376 289 76 41 chr3 20924328 20924525 -197112633 - MIR SINE MIR -57 205 2 1644 152 30 43 chr3 20924942 20925245 -197111913 - AluJo SINE Alu -13 299 1 2274 125 0 3 chr3 20926064 20926367 -197110791 + AluSx SINE Alu 1 302 -10 363 201 119 90 chr3 20926792 20926845 -197110313 + L2 LINE L2 3176 3226 -87 1944 159 3 3 chr3 20926845 20927135 -197110023 - AluSx SINE Alu -22 290 1 363 201 119 90 chr3 20927135 20927215 -197109943 + L2 LINE L2 3226 3313 0 2385 85 0 0 chr3 20927356 20927651 -197109507 + AluY SINE Alu 17 311 0 452 241 165 6 chr3 20927653 20927811 -197109347 + L1ME LINE L1 295 477 -5919 1395 189 108 0 chr3 20927818 20928141 -197109017 + L1ME LINE L1 4044 4401 -1814 2448 92 0 0 chr3 20928142 20928445 -197108713 + AluSc SINE Alu 1 303 -6 457 159 26 80 chr3 20928446 20928559 -197108599 + L1ME LINE L1 5399 5505 -730 1090 104 0 0 chr3 20928560 20928695 -197108463 + AluSq/x SINE Alu 1 135 -177 2376 95 3 0 chr3 20928695 20928991 -197108167 + AluSp SINE Alu 1 297 -16 2464 48 42 0 chr3 20929281 20929570 -197107588 - AluY SINE Alu -10 301 1 244 253 0 27 chr3 20930169 20930244 -197106914 - L2 LINE L2 0 3313 3241 2603 68 3 0 chr3 20930770 20931080 -197106078 + AluY SINE Alu 1 311 0 2335 86 3 0 chr3 20931156 20931448 -197105710 + AluSp SINE Alu 21 313 0 868 87 8 31 chr3 20933570 20933697 -197103461 + AluSg/x SINE Alu 167 290 -20 391 270 56 72 chr3 20933717 20934021 -197103137 - L2 LINE L2 -639 2675 2377 2123 127 3 16 chr3 20934087 20934402 -197102756 + AluJb SINE Alu 2 312 0 1740 141 47 10 chr3 20934565 20934946 -197102212 + L1MB3 LINE L1 5688 6139 -44 2169 133 3 0 chr3 20934952 20935254 -197101904 + AluSx SINE Alu 1 303 -9 1002 167 23 0 chr3 20935878 20936052 -197101106 - MLT1B LTR MaLR 0 390 213 459 131 20 91 chr3 20936055 20936154 -197101004 - MLT1B LTR MaLR -298 92 1 249 306 41 0 chr3 20936426 20936524 -197100634 - MIR3 SINE MIR -22 186 85 2100 85 3 25 chr3 20936551 20936834 -197100324 + AluSx SINE Alu 34 310 -2 1584 243 48 50 chr3 20936869 20937521 -197099637 - L2 LINE L2 -1 3312 2683 839 254 35 66 chr3 20937848 20937974 -197099184 + L1ME LINE L1 4571 4699 -1447 1876 179 7 0 chr3 20937974 20938275 -197098883 - AluJo SINE Alu -9 303 1 839 254 35 66 chr3 20938275 20938542 -197098616 + L1ME LINE L1 4699 4952 -1194 602 172 33 46 chr3 20938565 20938716 -197098442 + MLT1C LTR MaLR 1 149 -318 2123 116 3 7 chr3 20938717 20939019 -197098139 + AluSg SINE Alu 1 301 -9 1622 191 110 23 chr3 20939019 20939490 -197097668 + L1MC4 LINE L1 7125 7636 -406 1588 124 68 0 chr3 20939554 20939803 -197097355 - MER1B DNA MER1_type -1 338 73 1349 169 10 119 chr3 20939804 20939962 -197097196 + L1MC4 LINE L1 6125 5963 -279 2068 125 35 0 chr3 20939962 20940250 -197096908 + AluSq SINE Alu 1 298 -15 1349 169 10 119 chr3 20940250 20940504 -197096654 + L1MC4 LINE L1 5962 6242 0 637 271 127 9 chr3 20940505 20940902 -197096256 + L1ME LINE L1 5177 5623 -547 343 200 25 83 chr3 20942809 20942859 -197094299 + MIR SINE MIR 47 98 -164 2232 79 3 38 chr3 20942859 20943183 -197093975 - AluSq SINE Alu 0 314 1 343 200 25 83 chr3 20943183 20943251 -197093907 + MIR SINE MIR 98 159 -103 305 208 139 5 chr3 20943383 20943485 -197093673 - MIR SINE MIR -68 140 45 249 269 224 32 chr3 20943816 20943972 -197093186 - MLT1K LTR MaLR -22 566 381 351 0 0 0 chr3 20994179 20994187 -197042971 + (TG)n Simple_repeat Simple_repeat 1 47 0 351 0 0 0 chr3 20994187 20994226 -197042932 + (TG)n Simple_repeat Simple_repeat 2 40 0 2212 120 7 0 chr3 20994244 20994544 -197042614 - AluSx SINE Alu -10 302 1 534 266 53 19 chr3 20994801 20995008 -197042150 - L1ME3A LINE L1 0 6170 5957 208 293 189 28 chr3 20995230 20995336 -197041822 + MIR SINE MIR 30 152 -110 1817 142 0 50 chr3 20995585 20995908 -197041250 - AluJo SINE Alu -5 307 1 831 159 8 0 chr3 20997168 20997300 -197039858 + FLAM_C SINE Alu 1 133 -10 2337 102 0 7 chr3 20997755 20998060 -197039098 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr3 20998092 20998122 -197039036 + AT_rich Low_complexity Low_complexity 1 30 0 857 148 8 0 chr3 20998477 20998605 -197038553 + FLAM_C SINE Alu 1 129 -14 2225 126 0 0 chr3 20998750 20999051 -197038107 + AluSq SINE Alu 2 302 -11 2101 132 0 13 chr3 21000306 21000610 -197036548 - AluSx SINE Alu -12 300 1 1025 233 56 69 chr3 21000719 21001096 -197036062 + L1ME3A LINE L1 5519 5890 -280 1713 176 0 4 chr3 21001099 21001378 -197035780 + AluJb SINE Alu 1 278 -34 209 211 0 0 chr3 21001614 21001652 -197035506 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 721 192 0 0 chr3 21001652 21001777 -197035381 - AluJo SINE Alu -178 134 10 2164 110 7 0 chr3 21001791 21002082 -197035076 - AluSc SINE Alu -16 293 1 2528 74 0 3 chr3 21002331 21002643 -197034515 - AluY SINE Alu 0 311 1 1222 99 153 15 chr3 21002853 21003055 -197034103 + MER30 DNA MER1_type 1 230 0 23 0 0 0 chr3 21003072 21003095 -197034063 + AT_rich Low_complexity Low_complexity 1 23 0 499 181 0 0 chr3 21003736 21003830 -197033328 + FLAM_A SINE Alu 42 135 -7 26 0 0 0 chr3 21004188 21004214 -197032944 + AT_rich Low_complexity Low_complexity 1 26 0 787 173 0 15 chr3 21004548 21004681 -197032477 + FLAM_C SINE Alu 3 133 0 678 196 81 48 chr3 21004783 21004992 -197032166 - MER20 DNA MER1_type 0 219 4 21 0 0 0 chr3 21005178 21005199 -197031959 + AT_rich Low_complexity Low_complexity 1 21 0 872 221 52 27 chr3 21005210 21005510 -197031648 - L1 LINE L1 -1483 4663 4345 675 193 0 0 chr3 21006100 21006214 -197030944 - FLAM_A SINE Alu -19 114 1 460 242 60 33 chr3 21006214 21006429 -197030729 - L1 LINE L1 -1746 4400 4180 186 150 0 0 chr3 21006429 21006469 -197030689 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2858 13 0 3 chr3 21006618 21006929 -197030229 + AluYb8 SINE Alu 1 310 -8 190 326 0 23 chr3 21007204 21007290 -197029868 - MIR SINE MIR -79 183 100 1450 188 52 24 chr3 21007607 21007895 -197029263 + AluJo SINE Alu 3 298 -14 808 283 66 68 chr3 21008013 21008567 -197028591 - L2 LINE L2 -50 3263 2705 1669 187 11 7 chr3 21008568 21008852 -197028306 - AluJb SINE Alu -27 285 1 298 171 0 23 chr3 21008804 21008873 -197028285 - Alu SINE Alu -255 47 1 1814 170 6 10 chr3 21009030 21009341 -197027817 - AluJo SINE Alu -2 310 1 22 56 0 0 chr3 21009538 21009574 -197027584 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr3 21009574 21009598 -197027560 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2197 71 0 0 chr3 21009600 21009880 -197027278 - AluY SINE Alu -31 280 1 377 240 0 31 chr3 21009880 21009976 -197027182 - L1MC4 LINE L1 -150 7892 7800 1654 180 0 23 chr3 21011181 21011486 -197025672 + AluJo SINE Alu 1 298 -14 1366 196 6 55 chr3 21011756 21011930 -197025228 - AluJo SINE Alu -16 296 142 2239 64 54 0 chr3 21011930 21012225 -197024933 - AluY SINE Alu 0 311 1 1366 196 6 55 chr3 21012225 21012361 -197024797 - AluJo SINE Alu -170 142 1 1947 138 13 0 chr3 21013147 21013451 -197023707 + AluSx SINE Alu 1 308 -4 395 268 189 31 chr3 21013451 21013462 -197023696 + MLT1D LTR MaLR 207 215 -290 243 0 0 0 chr3 21013462 21013489 -197023669 + (CA)n Simple_repeat Simple_repeat 2 28 0 395 268 189 31 chr3 21013489 21013704 -197023454 + MLT1D LTR MaLR 215 479 -26 1877 127 18 0 chr3 21013704 21013988 -197023170 + AluSq SINE Alu 1 289 -24 395 268 189 31 chr3 21013988 21014014 -197023144 + MLT1D LTR MaLR 479 500 -5 763 296 56 5 chr3 21014027 21014243 -197022915 - MIR SINE MIR -27 235 9 448 288 16 16 chr3 21015093 21015218 -197021940 - MIR SINE MIR -118 144 20 468 99 0 0 chr3 21015577 21015648 -197021510 + (GA)n Simple_repeat Simple_repeat 2 72 0 225 94 0 0 chr3 21015710 21015742 -197021416 + (T)n Simple_repeat Simple_repeat 1 32 0 1470 91 0 14 chr3 21016288 21016496 -197020662 - AluSq SINE Alu -5 308 104 1038 88 7 0 chr3 21016496 21016633 -197020525 + AluSc SINE Alu 31 168 -141 689 197 8 0 chr3 21016733 21016850 -197020308 - FLAM_C SINE Alu -15 118 1 494 159 45 89 chr3 21016850 21016961 -197020197 - HsTC2 DNA Tc2 -17 1881 1777 1985 95 3 46 chr3 21016961 21017266 -197019892 - AluSg1 SINE Alu -17 292 1 494 159 45 89 chr3 21017266 21017311 -197019847 - HsTC2 DNA Tc2 -121 1777 1732 700 216 5 79 chr3 21017317 21017418 -197019740 - HsTC2 DNA Tc2 -1722 176 94 862 138 0 36 chr3 21017418 21017556 -197019602 + FLAM_A SINE Alu 1 133 0 700 216 5 79 chr3 21017556 21017644 -197019514 - HsTC2 DNA Tc2 -1804 94 1 260 383 20 34 chr3 21019493 21019642 -197017516 - MIR SINE MIR -80 182 36 2297 94 0 0 chr3 21021104 21021412 -197015746 + AluY SINE Alu 1 308 -3 1074 69 0 0 chr3 21021590 21021721 -197015437 + AluSq/x SINE Alu 1 131 -181 2368 69 10 7 chr3 21022375 21022680 -197014478 - AluSp SINE Alu -7 306 1 2190 97 3 3 chr3 21022895 21023203 -197013955 - AluSq SINE Alu -5 308 1 227 189 0 19 chr3 21023592 21023645 -197013513 + CT-rich Low_complexity Low_complexity 1 52 0 225 0 0 91 chr3 21024754 21024798 -197012360 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 23 54 0 0 chr3 21024903 21024940 -197012218 + GC_rich Low_complexity Low_complexity 1 37 0 41 96 0 0 chr3 21025093 21025218 -197011940 + GC_rich Low_complexity Low_complexity 1 125 0 251 128 39 13 chr3 21025264 21025342 -197011816 + (CCG)n Simple_repeat Simple_repeat 3 82 0 27 0 0 0 chr3 21025359 21025386 -197011772 + GC_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 21027201 21027230 -197009928 + AT_rich Low_complexity Low_complexity 1 29 0 2042 89 24 3 chr3 21027289 21027580 -197009578 - AluSx SINE Alu -15 297 1 1950 167 82 22 chr3 21028206 21028608 -197008550 + MSTB LTR MaLR 1 426 0 357 312 121 17 chr3 21028625 21028798 -197008360 - MIR SINE MIR -54 208 18 2113 94 7 3 chr3 21029303 21029600 -197007558 - AluSp SINE Alu -15 298 1 327 340 69 32 chr3 21030787 21031034 -197006124 + L2 LINE L2 3053 3308 -5 347 150 0 0 chr3 21031098 21031158 -197006000 + MER5A DNA MER1_type 1 60 -129 919 213 0 0 chr3 21031158 21031332 -197005826 + AluJo SINE Alu 121 294 -18 735 463 134 4 chr3 21031337 21031590 -197005568 - AluSg SINE Alu -14 286 1 196 321 21 79 chr3 21035078 21035218 -197001940 + L2 LINE L2 3179 3310 -3 230 370 9 37 chr3 21035554 21035662 -197001496 - MIR3 SINE MIR -27 181 77 21 0 0 0 chr3 21037845 21037866 -196999292 + AT_rich Low_complexity Low_complexity 1 21 0 1838 135 14 7 chr3 21037976 21038272 -196998886 - AluSx SINE Alu -3 309 12 1413 219 24 21 chr3 21038643 21038977 -196998181 - MER58B DNA MER1_type -6 335 1 1164 174 5 23 chr3 21039036 21039254 -196997904 - AluJo SINE Alu -15 297 84 1903 140 3 26 chr3 21039258 21039565 -196997593 - AluSx SINE Alu -12 300 1 1832 108 79 0 chr3 21039631 21039910 -196997248 - AluSx SINE Alu -11 301 1 2076 116 17 0 chr3 21040321 21040614 -196996544 + AluSq SINE Alu 1 298 -15 844 230 104 11 chr3 21041369 21041656 -196995502 - L1MD2 LINE L1 -364 5995 5682 2139 82 10 7 chr3 21041687 21042006 -196995152 + AluSq SINE Alu 4 323 0 377 230 168 80 chr3 21042261 21042535 -196994623 + L1MC5 LINE L1 7299 7596 -365 2471 40 0 3 chr3 21042609 21042905 -196994253 + AluY SINE Alu 1 295 -16 341 216 31 21 chr3 21042988 21043085 -196994073 + L1MC5 LINE L1 7832 7929 -32 533 341 75 43 chr3 21043799 21044236 -196992922 - L3 LINE CR1 -65 1512 1062 761 201 197 18 chr3 21044691 21044965 -196992193 + MER33 DNA MER1_type 1 323 -1 254 297 0 14 chr3 21046358 21046432 -196990726 - L3 LINE CR1 -547 1030 958 1914 84 113 0 chr3 21046773 21047047 -196990111 - AluSx SINE Alu -7 305 1 1379 278 85 34 chr3 21047982 21048749 -196988409 + L2 LINE L2 2512 3313 0 2115 96 0 0 chr3 21049069 21049378 -196987780 - AluSq SINE Alu 0 309 1 2220 98 0 0 chr3 21049845 21050140 -196987018 - AluSq SINE Alu -18 295 1 226 262 48 36 chr3 21050751 21050835 -196986323 + MIR SINE MIR 159 243 -19 251 303 56 45 chr3 21050912 21051001 -196986157 - MIR SINE MIR -11 251 162 294 322 63 58 chr3 21051158 21051332 -196985826 + MLT1F LTR MaLR 12 186 -356 1474 175 3 38 chr3 21051654 21051968 -196985190 + AluJo SINE Alu 1 303 -9 186 237 0 68 chr3 21052740 21052799 -196984359 - L2 LINE L2 -75 3238 3184 206 207 37 98 chr3 21053257 21053339 -196983819 + L3 LINE CR1 1403 1479 -98 2027 123 3 3 chr3 21053575 21053876 -196983282 + AluSx SINE Alu 1 301 -11 3496 158 14 23 chr3 21054264 21054414 -196982744 + L1PA16 LINE L1 5522 5672 -494 2337 91 0 0 chr3 21054414 21054722 -196982436 + AluSc SINE Alu 1 308 -1 3496 158 14 23 chr3 21054722 21055222 -196981936 + L1PA16 LINE L1 5672 6166 0 198 0 0 0 chr3 21056529 21056551 -196980607 + (T)n Simple_repeat Simple_repeat 1 22 0 496 167 0 59 chr3 21056588 21056690 -196980468 - FLAM_A SINE Alu -41 101 6 1918 136 3 7 chr3 21057401 21057709 -196979449 + AluSx SINE Alu 1 307 -5 615 237 116 58 chr3 21057721 21058117 -196979041 + HAL1 LINE L1 1368 1786 -721 1232 158 133 65 chr3 21058161 21058439 -196978719 + AluSx SINE Alu 1 297 -5 331 257 48 9 chr3 21058444 21058549 -196978609 + L1MC5 LINE L1 7806 7914 -47 782 153 8 0 chr3 21058574 21058692 -196978466 + AluSq/x SINE Alu 2 120 -193 22 35 0 0 chr3 21058696 21058725 -196978433 + AT_rich Low_complexity Low_complexity 1 29 0 1947 133 3 24 chr3 21061017 21061311 -196975847 + AluSq SINE Alu 1 288 -25 441 0 0 0 chr3 21061339 21061388 -196975770 + (TG)n Simple_repeat Simple_repeat 2 50 0 517 204 0 106 chr3 21061612 21061744 -196975414 - FLAM_A SINE Alu -15 118 1 1839 107 0 0 chr3 21061980 21062213 -196974945 + AluSx SINE Alu 1 233 -79 916 198 24 6 chr3 21062532 21062699 -196974459 + AluJb SINE Alu 121 290 -22 2035 138 0 14 chr3 21062707 21063004 -196974154 + AluSx SINE Alu 1 293 -19 232 204 197 21 chr3 21063057 21063199 -196973959 + Tigger8 DNA MER2_type 326 492 -174 2204 90 0 0 chr3 21063235 21063512 -196973646 + AluSg SINE Alu 13 289 -21 225 336 32 40 chr3 21063684 21063809 -196973349 - MIR3 SINE MIR -41 167 44 2111 224 96 48 chr3 21063817 21063925 -196973233 + L1MB5 LINE L1 2211 2312 -3834 1821 143 3 21 chr3 21063925 21064235 -196972923 + AluJb SINE Alu 1 305 0 2111 224 96 48 chr3 21064235 21064808 -196972350 + L1MB5 LINE L1 2312 2964 -3182 2024 99 3 51 chr3 21064808 21065120 -196972038 + AluSq SINE Alu 1 297 -16 2111 224 96 48 chr3 21065120 21065488 -196971670 + L1MB5 LINE L1 2964 3313 -2833 277 83 62 0 chr3 21065516 21065564 -196971594 - L1MB7 LINE L1 -3 6181 6131 1605 215 39 2 chr3 21065565 21066006 -196971152 - L1MB7 LINE L1 -16 6168 5712 1042 208 43 111 chr3 21066003 21066130 -196971028 + L1MB5 LINE L1 3359 3493 -2653 * 2171 128 0 0 chr3 21066130 21066428 -196970730 + AluSg SINE Alu 1 298 -12 1042 208 43 111 chr3 21066428 21066785 -196970373 + L1MB5 LINE L1 3493 3810 -2336 893 192 47 10 chr3 21066853 21067046 -196970112 + L1MC1 LINE L1 6134 6333 0 2979 204 49 39 chr3 21067060 21067456 -196969702 + L1MB5 LINE L1 5324 5715 -459 2588 62 0 0 chr3 21067456 21067761 -196969397 + AluY SINE Alu 1 305 -6 2979 204 49 39 chr3 21067761 21068207 -196968951 + L1MB5 LINE L1 5715 6174 0 1322 89 0 12 chr3 21069287 21069456 -196967702 - AluSg/x SINE Alu -15 297 131 2068 115 30 13 chr3 21070225 21070530 -196966628 + AluSx SINE Alu 3 312 0 510 246 0 12 chr3 21070530 21070701 -196966457 + GA-rich Low_complexity Low_complexity 2 170 0 1277 167 0 14 chr3 21071029 21071244 -196965914 + AluJb SINE Alu 85 296 -16 889 246 79 30 chr3 21072209 21072514 -196964644 + Charlie1a DNA MER1_type 16 335 -1120 1796 152 37 3 chr3 21072656 21072952 -196964206 + AluJb SINE Alu 1 306 -6 1970 129 41 0 chr3 21073248 21073542 -196963616 + AluSx SINE Alu 1 306 -6 2342 59 31 3 chr3 21074560 21074850 -196962308 - AluY SINE Alu -13 298 1 1206 137 0 32 chr3 21075118 21075332 -196961826 - AluSg/x SINE Alu 0 303 96 1435 181 24 27 chr3 21075447 21075740 -196961418 + AluSx SINE Alu 1 292 -20 520 184 10 10 chr3 21075754 21075857 -196961301 + AluSq/x SINE Alu 4 106 -207 873 159 0 0 chr3 21075959 21076091 -196961067 - AluJb SINE Alu -180 132 1 851 216 43 4 chr3 21076150 21076405 -196960753 + L1M4 LINE L1 4904 5168 -978 1602 173 18 11 chr3 21076431 21076709 -196960449 + AluJo SINE Alu 1 280 -32 2094 131 3 0 chr3 21076710 21077000 -196960158 - AluSx SINE Alu -19 293 3 321 135 0 0 chr3 21077015 21077067 -196960091 + (A)n Simple_repeat Simple_repeat 1 52 0 609 319 101 14 chr3 21077306 21077654 -196959504 + MLT1H1 LTR MaLR 142 519 -36 277 293 0 10 chr3 21077668 21077767 -196959391 + MLT1H1-int LTR MaLR 4 101 -1270 1628 184 10 7 chr3 21078290 21078578 -196958580 - AluJo SINE Alu -23 289 1 240 223 29 58 chr3 21078627 21078730 -196958428 - L1M4 LINE L1 -4898 1644 1545 1750 114 42 19 chr3 21079138 21079401 -196957757 - AluSx SINE Alu -20 292 24 943 257 120 46 chr3 21079986 21080475 -196956683 + MLT1H1 LTR MaLR 50 555 0 1658 120 65 105 chr3 21080643 21080994 -196956164 - MER1B DNA MER1_type 0 337 1 1553 197 0 7 chr3 21081338 21081617 -196955541 + AluJo SINE Alu 2 278 -34 323 211 11 0 chr3 21081633 21081723 -196955435 + GA-rich Low_complexity Low_complexity 2 92 0 839 163 0 0 chr3 21082867 21082996 -196954162 - FLAM_C SINE Alu -4 129 1 742 184 0 0 chr3 21083088 21083213 -196953945 + AluJb SINE Alu 1 125 -187 628 278 72 12 chr3 21083753 21084084 -196953074 - L1MEc LINE L1 -4579 1682 1332 331 200 0 0 chr3 21084221 21084286 -196952872 - AluJ/FLAM SINE Alu -211 91 27 319 321 42 37 chr3 21084299 21084446 -196952712 - L1MEc LINE L1 -4885 1185 1035 827 147 0 37 chr3 21084446 21084582 -196952576 - FLAM_C SINE Alu -2 131 1 319 321 42 37 chr3 21084582 21084624 -196952534 - L1MEc LINE L1 -5035 1035 995 304 270 101 11 chr3 21084651 21084829 -196952329 - L1MEc LINE L1 -5069 1001 808 2158 105 7 3 chr3 21085213 21085507 -196951651 + AluSg SINE Alu 1 295 -15 2066 116 0 14 chr3 21086656 21086948 -196950210 - AluSx SINE Alu -24 288 1 21 0 0 0 chr3 21086949 21086970 -196950188 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 29 chr3 21087083 21087094 -196950064 + AT_rich Low_complexity Low_complexity 1 11 -22 1881 155 48 0 chr3 21087094 21087385 -196949773 - AluSx SINE Alu -7 305 1 23 0 0 29 chr3 21087385 21087407 -196949751 + AT_rich Low_complexity Low_complexity 11 33 0 663 184 8 8 chr3 21087418 21087543 -196949615 + AluJb SINE Alu 2 126 -186 196 161 32 16 chr3 21087549 21087611 -196949547 + A-rich Low_complexity Low_complexity 4 66 0 574 285 45 32 chr3 21088199 21088420 -196948738 - MIR SINE MIR -26 236 13 381 182 26 0 chr3 21088700 21088777 -196948381 + AluSg/x SINE Alu 219 297 -3 2311 122 0 0 chr3 21089127 21089439 -196947719 + AluSx SINE Alu 1 312 0 929 176 0 108 chr3 21089555 21089805 -196947353 + AluJb SINE Alu 90 312 0 2590 49 0 7 chr3 21090089 21090396 -196946762 - AluYa5 SINE Alu -6 305 1 23 0 0 0 chr3 21091579 21091602 -196945556 + AT_rich Low_complexity Low_complexity 1 23 0 1121 187 123 30 chr3 21091619 21091644 -196945514 - AluJo SINE Alu -9 293 272 1760 73 0 0 chr3 21091644 21091862 -196945296 + AluY SINE Alu 84 301 -10 1121 187 123 30 chr3 21091862 21092104 -196945054 - AluJo SINE Alu -30 272 1 2353 80 0 13 chr3 21092580 21092893 -196944265 - AluY SINE Alu -2 309 1 1251 152 0 0 chr3 21093028 21093206 -196943952 + AluSg/x SINE Alu 117 294 -16 522 199 0 43 chr3 21093561 21093669 -196943489 - Charlie1 DNA MER1_type -5 2756 2654 1814 192 49 0 chr3 21093669 21094018 -196943140 - MER47A DNA MER2_type 0 366 1 522 199 0 43 chr3 21094018 21094050 -196943108 - Charlie1 DNA MER1_type -107 2654 2622 * 575 219 33 13 chr3 21094048 21094199 -196942959 - Charlie1 DNA MER1_type -2541 220 67 214 243 117 39 chr3 21094572 21094675 -196942483 - L3 LINE CR1 -322 1255 1145 943 108 0 0 chr3 21095038 21095167 -196941991 - FLAM_C SINE Alu -4 129 1 253 222 16 0 chr3 21095195 21095258 -196941900 + FLAM_A SINE Alu 69 132 -1 504 213 0 41 chr3 21095644 21095766 -196941392 - FRAM SINE Alu -16 160 44 1074 176 38 86 chr3 21095892 21096159 -196940999 - AluJb SINE Alu -15 297 44 2103 133 0 0 chr3 21096397 21096698 -196940460 + AluSx SINE Alu 1 301 -11 1548 185 3 55 chr3 21096699 21097007 -196940151 - AluJo SINE Alu -20 292 1 1373 211 39 3 chr3 21097011 21097296 -196939862 - AluJo SINE Alu -6 296 2 395 251 66 33 chr3 21097663 21097906 -196939252 - L1ME3A LINE L1 -270 5900 5650 183 188 0 0 chr3 21097909 21097941 -196939217 + MER5C DNA MER1_type 1 32 -292 1433 194 86 0 chr3 21098139 21098294 -196938864 - AluJb SINE Alu -10 302 162 185 0 40 0 chr3 21098294 21098319 -196938839 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1433 194 86 0 chr3 21098319 21098441 -196938717 - AluJb SINE Alu -150 162 1 240 59 0 0 chr3 21098582 21098616 -196938542 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2072 115 0 0 chr3 21098617 21098896 -196938262 - AluSx SINE Alu -32 280 2 441 254 193 33 chr3 21098903 21099116 -196938042 - L1ME3A LINE L1 -751 5395 5149 1462 189 8 11 chr3 21099135 21099400 -196937758 + AluJo SINE Alu 5 268 -44 599 355 81 24 chr3 21099504 21099692 -196937466 - L1ME3A LINE L1 -1768 4378 4202 1831 175 7 0 chr3 21099692 21100000 -196937158 - AluJb SINE Alu -2 310 1 599 355 81 24 chr3 21100000 21100267 -196936891 - L1ME3A LINE L1 -1944 4202 3897 489 271 64 61 chr3 21100435 21100996 -196936162 - L1ME3A LINE L1 -2467 3679 3117 251 281 22 22 chr3 21101149 21101288 -196935870 - L1ME3A LINE L1 -3330 2816 2678 396 0 0 0 chr3 21101445 21101489 -196935669 + (TTGG)n Simple_repeat Simple_repeat 2 45 0 2002 127 0 7 chr3 21101489 21101773 -196935385 - AluSg SINE Alu -28 282 1 21 36 0 0 chr3 21102007 21102035 -196935123 + AT_rich Low_complexity Low_complexity 1 28 0 689 250 122 44 chr3 21102049 21102369 -196934789 - L1ME3A LINE L1 -26 6144 5800 2418 81 7 3 chr3 21102813 21103120 -196934038 + AluY SINE Alu 1 308 -3 366 228 96 32 chr3 21103167 21103417 -196933741 + L1M4 LINE L1 3745 4010 -2136 390 258 159 34 chr3 21103542 21103775 -196933383 + L1M4 LINE L1 4224 4485 -1661 858 288 66 22 chr3 21103784 21104239 -196932919 + L1M4 LINE L1 4635 5109 -1037 262 181 12 72 chr3 21104604 21104770 -196932388 + (TATATG)n Simple_repeat Simple_repeat 5 160 0 2114 141 0 19 chr3 21105599 21105912 -196931246 - AluSx SINE Alu -5 307 1 1992 125 3 16 chr3 21106620 21106924 -196930234 + AluSx SINE Alu 1 300 -12 985 156 82 130 chr3 21107562 21107701 -196929457 + AluJo SINE Alu 1 145 -167 1546 168 31 31 chr3 21107701 21107987 -196929171 - AluJo SINE Alu -26 286 1 1857 131 0 55 chr3 21107994 21108322 -196928836 - AluSx SINE Alu -2 310 1 985 156 82 130 chr3 21108322 21108444 -196928714 + AluJo SINE Alu 151 257 -55 21 36 0 0 chr3 21108472 21108500 -196928658 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 21108588 21108613 -196928545 + AT_rich Low_complexity Low_complexity 1 25 0 2380 77 0 7 chr3 21108887 21109186 -196927972 - AluY SINE Alu -14 297 1 346 115 16 0 chr3 21109205 21109266 -196927892 - MER50 LTR ERV1 -174 560 499 1815 172 0 0 chr3 21109722 21110013 -196927145 + AluJo SINE Alu 1 291 -21 2397 80 0 10 chr3 21110130 21110431 -196926727 + AluSc SINE Alu 2 299 -10 21 36 0 0 chr3 21110831 21110859 -196926299 + AT_rich Low_complexity Low_complexity 1 28 0 275 238 109 0 chr3 21110921 21111022 -196926136 - MIR SINE MIR -12 250 139 1504 129 0 0 chr3 21111257 21111459 -196925699 - AluSx SINE Alu -110 202 1 1869 174 0 3 chr3 21112116 21112420 -196924738 + AluSx SINE Alu 1 303 -9 372 207 180 9 chr3 21112438 21112549 -196924609 + L1 LINE L1 4195 4324 -1822 1579 191 0 30 chr3 21112679 21112983 -196924175 + AluJo SINE Alu 1 295 -17 1761 117 0 119 chr3 21113162 21113528 -196923630 - AluJo SINE Alu 0 325 1 888 161 0 0 chr3 21113890 21114027 -196923131 - AluJo SINE Alu -175 137 1 1966 165 0 0 chr3 21114066 21114363 -196922795 + AluSx SINE Alu 1 297 -15 2267 105 0 0 chr3 21114491 21114802 -196922356 + AluSx SINE Alu 1 311 0 2253 100 0 3 chr3 21115122 21115411 -196921747 + AluSx SINE Alu 1 288 -24 205 290 0 0 chr3 21116153 21116222 -196920936 - L3 LINE CR1 -890 687 619 2375 86 3 0 chr3 21117038 21117373 -196919785 + AluSp SINE Alu 1 336 0 359 314 33 33 chr3 21117619 21117829 -196919329 - MIR SINE MIR -32 230 21 2192 83 14 0 chr3 21118128 21118457 -196918701 + AluY SINE Alu 1 333 0 1178 182 147 23 chr3 21118518 21118776 -196918382 - AluJb SINE Alu -8 294 5 1999 142 3 0 chr3 21119169 21119458 -196917700 + AluSx SINE Alu 1 290 -22 1255 181 0 5 chr3 21119682 21119905 -196917253 + AluSg/x SINE Alu 85 306 0 1407 312 129 21 chr3 21119945 21120887 -196916271 + L2 LINE L2 1847 2890 -424 2208 108 10 10 chr3 21121221 21121527 -196915631 + AluSx SINE Alu 1 306 -6 435 241 152 0 chr3 21121922 21122034 -196915124 + FLAM_A SINE Alu 1 129 -4 729 222 59 82 chr3 21122319 21122650 -196914508 + L1MC5 LINE L1 7306 7628 -333 2184 122 0 10 chr3 21122650 21122954 -196914204 - AluJb SINE Alu -11 301 1 729 222 59 82 chr3 21122954 21123010 -196914148 + L1MC5 LINE L1 7628 7684 -277 822 167 118 48 chr3 21123021 21123249 -196913909 + AluJo SINE Alu 63 306 -6 2003 122 40 0 chr3 21123249 21123527 -196913631 + AluSx SINE Alu 1 289 -23 238 254 64 9 chr3 21123545 21123655 -196913503 + L1MC5 LINE L1 7709 7824 -137 * 794 139 63 57 chr3 21123646 21123804 -196913354 + L1PB1 LINE L1 5993 6151 0 37 0 0 0 chr3 21123976 21124013 -196913145 + AT_rich Low_complexity Low_complexity 1 37 0 2227 76 14 7 chr3 21124013 21124301 -196912857 - AluY SINE Alu -21 290 1 2179 128 7 3 chr3 21124306 21124611 -196912547 - AluSq SINE Alu -7 306 1 1859 167 0 31 chr3 21124611 21124927 -196912231 - AluSx SINE Alu -5 307 1 2240 110 0 7 chr3 21125119 21125420 -196911738 - AluSq SINE Alu -13 300 2 2050 260 99 12 chr3 21125440 21126079 -196911079 - MER44D DNA MER2_type -1 604 39 21 36 0 0 chr3 21126081 21126109 -196911049 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 21126232 21126254 -196910904 + AT_rich Low_complexity Low_complexity 1 22 0 2077 114 4 4 chr3 21126256 21126537 -196910621 + AluSg1 SINE Alu 1 281 -28 188 33 0 33 chr3 21126545 21126575 -196910583 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1574 191 30 20 chr3 21127382 21127685 -196909473 + AluJb SINE Alu 1 306 -6 805 238 0 6 chr3 21128274 21128446 -196908712 - AluJo SINE Alu -140 172 2 464 291 0 28 chr3 21128448 21128589 -196908569 - FRAM SINE Alu -22 154 18 2449 86 0 0 chr3 21128656 21128959 -196908199 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr3 21129241 21129262 -196907896 + AT_rich Low_complexity Low_complexity 1 21 0 207 307 44 44 chr3 21129383 21129497 -196907661 + L3 LINE CR1 985 1098 -479 1388 170 4 13 chr3 21129607 21129837 -196907321 + AluJo SINE Alu 2 229 -83 511 276 0 0 chr3 21130753 21130869 -196906289 + FLAM_A SINE Alu 1 116 -17 186 43 0 0 chr3 21130873 21130896 -196906262 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2225 124 0 0 chr3 21132010 21132309 -196904849 + AluSq SINE Alu 1 299 -14 2103 119 3 0 chr3 21132397 21132683 -196904475 + AluSx SINE Alu 2 288 -24 1834 80 13 0 chr3 21133419 21133645 -196903513 + AluSg SINE Alu 1 229 -81 856 212 10 56 chr3 21133645 21133843 -196903315 + AluJo SINE Alu 90 278 -34 1902 175 0 0 chr3 21134344 21134641 -196902517 - AluJb SINE Alu -15 297 1 2122 139 3 0 chr3 21134997 21135299 -196901859 + AluSx SINE Alu 1 303 -9 585 252 8 0 chr3 21135740 21135863 -196901295 + MLT1A1 LTR MaLR 19 142 -223 652 229 0 14 chr3 21135863 21136003 -196901155 + FRAM SINE Alu 1 136 -40 1950 121 20 7 chr3 21136165 21136463 -196900695 + AluSx SINE Alu 3 304 -8 1960 151 0 7 chr3 21136466 21136757 -196900401 + AluSx SINE Alu 5 293 -19 2116 112 0 11 chr3 21136768 21137091 -196900067 + AluSx SINE Alu 1 320 0 327 250 0 23 chr3 21137091 21137179 -196899979 + L1M4 LINE L1 2648 2733 -3413 346 203 145 100 chr3 21137704 21137945 -196899213 + L1MC4 LINE L1 7779 8030 -12 2301 104 0 3 chr3 21137968 21138276 -196898882 + AluSx SINE Alu 1 307 -5 652 159 0 48 chr3 21138318 21138444 -196898714 + FLAM_C SINE Alu 24 143 0 2092 121 0 7 chr3 21138512 21138817 -196898341 + AluSg SINE Alu 1 303 0 946 206 20 53 chr3 21139215 21139462 -196897696 + AluJb SINE Alu 1 239 -73 1882 134 65 0 chr3 21139779 21140070 -196897088 + AluSg SINE Alu 1 310 0 2296 77 16 19 chr3 21140147 21140458 -196896700 + AluSq SINE Alu 1 310 -3 213 196 10 108 chr3 21140867 21140925 -196896233 - MIR SINE MIR -50 212 167 2421 75 0 0 chr3 21140925 21141218 -196895940 - AluSc SINE Alu -16 293 1 213 196 10 108 chr3 21141218 21141261 -196895897 - MIR SINE MIR -95 167 121 281 236 34 0 chr3 21141269 21141358 -196895800 + L1MEd LINE L1 13 104 -6015 402 144 27 16 chr3 21141496 21141599 -196895559 - AluS SINE Alu -239 62 1 306 233 58 34 chr3 21141834 21141921 -196895237 + L1MB3 LINE L1 5942 6030 -145 609 195 0 16 chr3 21141941 21142064 -196895094 + FLAM_C SINE Alu 22 142 -1 1705 140 53 4 chr3 21142074 21142338 -196894820 + AluSx SINE Alu 22 298 -14 36 0 0 0 chr3 21142375 21142411 -196894747 + AT_rich Low_complexity Low_complexity 1 36 0 1610 184 0 21 chr3 21142411 21142694 -196894464 + AluJb SINE Alu 1 277 -35 189 0 0 0 chr3 21142703 21142724 -196894434 + (CA)n Simple_repeat Simple_repeat 2 22 0 324 48 0 0 chr3 21142757 21142799 -196894359 + (GA)n Simple_repeat Simple_repeat 2 43 0 2404 76 0 0 chr3 21142843 21143134 -196894024 + AluY SINE Alu 11 301 -10 2295 91 13 10 chr3 21143187 21143495 -196893663 + AluY SINE Alu 1 309 -2 591 115 0 21 chr3 21143511 21143607 -196893551 - AluSp/q SINE Alu 0 313 220 225 0 0 0 chr3 21143776 21143801 -196893357 + (A)n Simple_repeat Simple_repeat 1 25 0 694 247 12 6 chr3 21143823 21143989 -196893169 + FAM SINE Alu 2 168 -7 1855 121 89 11 chr3 21143989 21144269 -196892889 + AluSq SINE Alu 1 302 -11 597 145 237 93 chr3 21144289 21144362 -196892796 + L1MB2 LINE L1 5727 5788 -393 2193 106 0 7 chr3 21144362 21144654 -196892504 - AluSg SINE Alu -20 290 1 2050 131 0 10 chr3 21144656 21144953 -196892205 - AluSx SINE Alu -18 294 1 597 145 237 93 chr3 21144953 21145110 -196892048 + L1MB2 LINE L1 5788 5990 -191 * 626 222 118 0 chr3 21145105 21145249 -196891909 - L1MB3 LINE L1 -229 5954 5794 585 227 16 15 chr3 21145251 21145407 -196891751 + L1MB2 LINE L1 6005 6162 -6 1100 89 0 20 chr3 21145954 21146100 -196891058 + AluSq/x SINE Alu 1 143 -169 2112 108 4 4 chr3 21146104 21146382 -196890776 + AluSg SINE Alu 3 280 -30 339 220 0 0 chr3 21147073 21147132 -196890026 + AluJ/FRAM SINE Alu 221 279 -23 444 37 0 0 chr3 21147132 21147186 -196889972 + (CA)n Simple_repeat Simple_repeat 1 54 0 1482 153 4 4 chr3 21147189 21147418 -196889740 + AluJb SINE Alu 71 299 -13 2099 110 31 0 chr3 21147423 21147715 -196889443 + AluSc SINE Alu 1 301 -8 487 280 76 16 chr3 21147715 21147955 -196889203 + L1M4c LINE L1 1535 1879 -884 2139 111 9 19 chr3 21147955 21148270 -196888888 + AluSx SINE Alu 1 312 0 487 280 76 16 chr3 21148270 21148301 -196888857 + L1M4c LINE L1 1879 1907 -856 312 180 0 16 chr3 21148459 21148520 -196888638 - MLT1L LTR MaLR 0 615 556 2165 93 73 0 chr3 21148522 21148811 -196888347 + AluSx SINE Alu 1 310 -2 2357 93 0 7 chr3 21148824 21149126 -196888032 + AluSq SINE Alu 8 307 -6 1837 137 20 13 chr3 21149196 21149495 -196887663 + AluSx SINE Alu 1 301 -11 542 228 104 89 chr3 21149496 21149545 -196887613 + L1MC4 LINE L1 7531 7578 -464 2028 133 3 7 chr3 21149545 21149846 -196887312 + AluSx SINE Alu 1 300 -12 542 228 104 89 chr3 21149846 21149874 -196887284 + L1MC4 LINE L1 7578 7604 -438 1496 213 0 20 chr3 21149874 21150015 -196887143 + AluJo SINE Alu 1 143 -169 2166 117 0 0 chr3 21150015 21150321 -196886837 + AluSx SINE Alu 1 306 0 1496 213 0 20 chr3 21150321 21150478 -196886680 + AluJo SINE Alu 143 294 -18 542 228 104 89 chr3 21150478 21150658 -196886500 + L1MC4 LINE L1 7604 7793 -249 1841 119 101 0 chr3 21150978 21151246 -196885912 - AluSx SINE Alu -17 295 1 255 241 0 17 chr3 21151664 21151722 -196885436 + MARNA DNA Mariner 251 307 -279 1126 117 0 0 chr3 21151804 21151949 -196885209 + AluSq/x SINE Alu 1 145 -168 2565 66 0 0 chr3 21151949 21152251 -196884907 + AluY SINE Alu 1 302 -9 779 188 0 0 chr3 21152343 21152476 -196884682 - FLAM_C SINE Alu 0 133 1 2497 55 3 7 chr3 21152762 21153070 -196884088 - AluY SINE Alu -4 307 1 1624 114 0 0 chr3 21153172 21153391 -196883767 - AluSc SINE Alu -2 307 89 2357 66 0 7 chr3 21153404 21153707 -196883451 - AluY SINE Alu 0 311 11 763 100 0 0 chr3 21153707 21153807 -196883351 - AluSg/x SINE Alu -79 233 134 2260 109 3 0 chr3 21153807 21154111 -196883047 - AluSp SINE Alu -7 306 2 2222 109 0 7 chr3 21154266 21154569 -196882589 - AluSg SINE Alu -9 301 1 618 159 0 37 chr3 21154575 21154720 -196882438 - AluSg/x SINE Alu 0 310 189 590 238 63 0 chr3 21154763 21154906 -196882252 + AluSg/x SINE Alu 76 227 -83 2177 111 7 0 chr3 21154909 21155198 -196881960 - AluSx SINE Alu -21 291 1 1597 164 0 103 chr3 21155201 21155370 -196881788 - AluJb SINE Alu -12 300 115 2558 54 0 0 chr3 21155370 21155664 -196881494 - AluY SINE Alu -17 294 1 1597 164 0 103 chr3 21155664 21155685 -196881473 - AluJb SINE Alu -197 115 93 2461 90 0 0 chr3 21155685 21155997 -196881161 - AluSx SINE Alu 0 312 1 1597 164 0 103 chr3 21155997 21156135 -196881023 - AluJb SINE Alu -219 93 5 649 200 0 0 chr3 21156140 21156255 -196880903 + MER58A DNA MER1_type 42 156 0 2461 92 0 0 chr3 21156304 21156607 -196880551 - AluSc SINE Alu -6 303 1 2269 117 3 3 chr3 21156607 21156916 -196880242 - AluSq SINE Alu -4 309 1 297 221 0 0 chr3 21156921 21156989 -196880169 + Charlie2 DNA MER1_type 1817 1884 -978 1855 157 27 0 chr3 21157011 21157311 -196879847 - AluSx SINE Alu -4 308 1 411 190 13 0 chr3 21157322 21157401 -196879757 - FLAM_A SINE Alu -22 120 41 647 243 169 23 chr3 21157428 21157729 -196879429 - L1ME2 LINE L1 -10 6154 5810 358 167 0 0 chr3 21157743 21157803 -196879355 - L1ME2 LINE L1 -833 5313 5254 877 157 13 7 chr3 21157803 21157956 -196879202 - AluSq SINE Alu -16 297 144 2042 111 57 3 chr3 21158190 21158487 -196878671 + AluSq SINE Alu 1 313 0 1433 156 70 30 chr3 21158545 21158749 -196878409 - AluJb SINE Alu 0 330 109 180 0 0 0 chr3 21158749 21158769 -196878389 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1433 156 70 30 chr3 21158769 21158883 -196878275 - AluJb SINE Alu -221 109 1 21 57 0 0 chr3 21158910 21158945 -196878213 + AT_rich Low_complexity Low_complexity 1 35 0 1855 151 20 3 chr3 21158977 21159269 -196877889 + AluJo SINE Alu 1 297 -15 279 226 157 35 chr3 21159281 21159396 -196877762 + MIR SINE MIR 117 245 -17 210 239 65 0 chr3 21159368 21159414 -196877744 + L2 LINE L2 3222 3270 -2 * 658 140 0 18 chr3 21159416 21159530 -196877628 + FRAM SINE Alu 65 176 0 1932 115 15 0 chr3 21160428 21160698 -196876460 - AluSx SINE Alu 0 312 39 304 196 0 76 chr3 21160852 21160944 -196876214 - L2 LINE L2 -1 3312 3228 25 31 0 0 chr3 21161718 21161750 -196875408 + GC_rich Low_complexity Low_complexity 1 32 0 223 295 9 19 chr3 21161985 21162090 -196875068 + (CCG)n Simple_repeat Simple_repeat 2 105 0 208 302 11 44 chr3 21162037 21162219 -196874939 + C-rich Low_complexity Low_complexity 3 178 0 * 228 299 248 6 chr3 21162854 21163011 -196874147 + L2 LINE L2 3119 3313 0 1443 152 47 19 chr3 21163070 21163326 -196873832 + AluJb SINE Alu 33 295 -17 304 116 0 0 chr3 21163450 21163493 -196873665 + MER4E LTR ERV1 652 694 -72 21 0 0 0 chr3 21163495 21163516 -196873642 + AT_rich Low_complexity Low_complexity 1 21 0 2195 100 3 10 chr3 21163538 21163829 -196873329 + AluSg SINE Alu 1 289 -21 1183 210 91 30 chr3 21163830 21164256 -196872902 - L1MC4 LINE L1 0 8042 7501 403 210 161 0 chr3 21164262 21164405 -196872753 - L1MC4 LINE L1 -597 7445 7280 587 192 0 48 chr3 21164405 21164530 -196872628 - AluJb SINE Alu -6 306 188 2609 71 0 0 chr3 21164553 21164861 -196872297 + AluY SINE Alu 1 308 -3 2123 115 7 7 chr3 21164870 21165165 -196871993 + AluSp SINE Alu 1 295 -18 2043 112 3 40 chr3 21165185 21165320 -196871838 + AluSx SINE Alu 1 139 -173 2125 119 0 13 chr3 21165320 21165622 -196871536 + AluSx SINE Alu 1 298 -14 2043 112 3 40 chr3 21165622 21165789 -196871369 + AluSx SINE Alu 139 292 -20 293 243 13 1 chr3 21165872 21165961 -196871197 - L1MC4 LINE L1 -1288 6537 6432 2186 112 10 10 chr3 21166139 21166271 -196870887 + AluSx SINE Alu 1 132 -180 2212 130 0 0 chr3 21166271 21166578 -196870580 + AluSg SINE Alu 1 307 -3 2186 112 10 10 chr3 21166578 21166741 -196870417 + AluSx SINE Alu 131 296 -16 1472 182 54 11 chr3 21166750 21167030 -196870128 + AluJb SINE Alu 1 292 -20 1814 157 3 46 chr3 21167084 21167267 -196869891 - AluJb SINE Alu -2 310 121 225 108 0 0 chr3 21167267 21167304 -196869854 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2188 84 7 11 chr3 21167304 21167584 -196869574 - AluY SINE Alu -32 279 1 1814 157 3 46 chr3 21167584 21167729 -196869429 - AluJb SINE Alu -189 123 1 452 223 36 54 chr3 21167799 21167923 -196869235 - L1M4 LINE L1 -2537 3609 3487 2230 125 3 0 chr3 21167923 21168220 -196868938 - AluSx SINE Alu -14 298 1 452 223 36 54 chr3 21168220 21168261 -196868897 - L1M4 LINE L1 -2659 3487 3447 1128 154 0 0 chr3 21168265 21168434 -196868724 - AluSc SINE Alu -9 300 132 2401 88 0 31 chr3 21168434 21168754 -196868404 - AluSp SINE Alu -3 310 1 1633 185 3 14 chr3 21168766 21169058 -196868100 - AluJo SINE Alu -13 299 11 1229 156 120 58 chr3 21169070 21169232 -196867926 - MER74A LTR ERVL -250 308 121 2453 72 0 10 chr3 21169232 21169538 -196867620 - AluY SINE Alu -8 303 1 1229 156 120 58 chr3 21169538 21169650 -196867508 - MER74A LTR ERVL -437 121 17 868 179 49 19 chr3 21169892 21169907 -196867251 + AluSg/x SINE Alu 119 132 -178 2056 156 0 0 chr3 21169907 21170208 -196866950 + AluSx SINE Alu 1 301 -11 868 179 49 19 chr3 21170208 21170354 -196866804 + AluSg/x SINE Alu 132 285 -25 2125 105 17 0 chr3 21170367 21170663 -196866495 + AluY SINE Alu 1 301 -10 1163 260 70 52 chr3 21170692 21170723 -196866435 + L1ME LINE L1 4992 5021 -1149 2085 117 0 29 chr3 21170723 21170857 -196866301 + AluSg SINE Alu 1 137 -173 2297 113 3 0 chr3 21170857 21171166 -196865992 + AluSg SINE Alu 1 310 0 2085 117 0 29 chr3 21171166 21171339 -196865819 + AluSg SINE Alu 137 299 -11 1163 260 70 52 chr3 21171339 21171398 -196865760 + L1ME LINE L1 5021 5077 -1093 2526 76 3 0 chr3 21171398 21171702 -196865456 + AluSp SINE Alu 1 305 -8 1163 260 70 52 chr3 21171702 21171771 -196865387 + L1ME LINE L1 5077 5143 -1027 616 284 98 0 chr3 21171771 21171975 -196865183 + MER58A DNA MER1_type 1 224 0 1163 260 70 52 chr3 21171975 21172115 -196865043 + L1ME LINE L1 5143 5279 -891 1782 183 10 10 chr3 21172115 21172427 -196864731 + AluJo SINE Alu 1 312 0 1163 260 70 52 chr3 21172427 21172641 -196864517 + L1ME LINE L1 5279 5488 -682 2294 101 0 25 chr3 21172641 21172958 -196864200 + AluY SINE Alu 1 309 -2 1163 260 70 52 chr3 21172958 21173251 -196863907 + L1ME LINE L1 5488 5812 -358 1299 208 0 4 chr3 21173289 21173530 -196863628 - AluJo SINE Alu -35 277 38 448 229 25 34 chr3 21173572 21173690 -196863468 + AluJb SINE Alu 179 295 -17 450 184 68 150 chr3 21173691 21173838 -196863320 + MER58B DNA MER1_type 177 311 -30 29 0 0 0 chr3 21173857 21173886 -196863272 + AT_rich Low_complexity Low_complexity 1 29 0 1938 116 70 7 chr3 21173899 21174184 -196862974 + AluSx SINE Alu 1 303 -9 2195 114 7 0 chr3 21174184 21174483 -196862675 + AluSx SINE Alu 1 301 -11 571 279 65 4 chr3 21174517 21174746 -196862412 + L1MC5 LINE L1 7637 7879 -82 478 173 36 45 chr3 21174746 21174856 -196862302 - LTR40a LTR ERVL 0 519 411 198 0 0 0 chr3 21174856 21174878 -196862280 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 1227 180 19 0 chr3 21174895 21175106 -196862052 + AluJb SINE Alu 83 297 -15 2144 126 7 0 chr3 21175107 21175408 -196861750 + AluSx SINE Alu 2 304 -8 705 222 0 47 chr3 21175408 21175579 -196861579 + AluJo/FRAM SINE Alu 137 299 -3 2154 113 13 10 chr3 21175627 21175929 -196861229 - AluSx SINE Alu -9 303 1 765 184 63 76 chr3 21175973 21176196 -196860962 + MLT1B LTR MaLR 1 220 -170 1644 175 4 11 chr3 21176208 21176476 -196860682 - AluJb SINE Alu -38 274 9 2282 122 0 0 chr3 21176488 21176799 -196860359 - AluSx SINE Alu -1 311 1 1584 180 6 42 chr3 21176799 21176917 -196860241 - AluJb SINE Alu -9 303 182 2391 100 3 0 chr3 21176917 21177216 -196859942 - AluSg SINE Alu -10 300 1 1584 180 6 42 chr3 21177216 21177408 -196859750 - AluJb SINE Alu -130 182 4 2202 96 11 0 chr3 21177489 21177801 -196859357 - AluSp SINE Alu 0 315 1 1974 161 3 3 chr3 21177821 21178125 -196859033 + AluJb SINE Alu 1 304 -8 2023 142 7 3 chr3 21178526 21178822 -196858336 + AluSx SINE Alu 1 297 -15 2236 90 20 10 chr3 21179433 21179732 -196857426 - AluSq SINE Alu -11 302 1 23 68 0 0 chr3 21180923 21180967 -196856191 + GC_rich Low_complexity Low_complexity 1 44 0 2301 85 0 0 chr3 21181759 21182061 -196855097 + AluSq SINE Alu 1 302 0 420 237 127 29 chr3 21182195 21182368 -196854790 + MIR SINE MIR 7 196 -66 2229 98 0 7 chr3 21183019 21183327 -196853831 - AluSx SINE Alu 0 306 1 1563 150 44 44 chr3 21183486 21183621 -196853537 - AluSx SINE Alu -18 294 160 2324 104 0 3 chr3 21183621 21183928 -196853230 - AluSg SINE Alu -4 306 1 2310 102 0 3 chr3 21183930 21184224 -196852934 - AluSg SINE Alu -10 300 8 1563 150 44 44 chr3 21184224 21184379 -196852779 - AluSx SINE Alu -152 160 1 2296 101 3 10 chr3 21184385 21184691 -196852467 - AluSp SINE Alu -6 307 4 1935 154 3 20 chr3 21184697 21185002 -196852156 - AluJo SINE Alu -12 300 1 2316 111 0 3 chr3 21185054 21185361 -196851797 - AluSx SINE Alu -6 306 1 1637 82 23 14 chr3 21185364 21185583 -196851575 - AluSq SINE Alu -4 309 89 2582 58 0 10 chr3 21185716 21186028 -196851130 - AluY SINE Alu -2 309 1 2101 113 0 17 chr3 21187437 21187738 -196849420 - AluSx SINE Alu -16 296 1 335 346 79 26 chr3 21187770 21187998 -196849160 + L2 LINE L2 3024 3263 -9 1456 128 8 12 chr3 21188011 21188262 -196848896 - MSTA LTR MaLR 0 428 179 2041 118 10 7 chr3 21188266 21188562 -196848596 + AluSx SINE Alu 1 297 -15 211 338 73 59 chr3 21188749 21188953 -196848205 - L2 LINE L2 -35 3237 3031 2189 103 0 3 chr3 21189001 21189308 -196847850 - AluSc SINE Alu 0 306 1 2463 80 0 3 chr3 21189361 21189660 -196847498 - AluSc SINE Alu -11 298 1 543 229 93 0 chr3 21189710 21189850 -196847308 - L1MC5 LINE L1 -67 7894 7742 2638 71 0 0 chr3 21189989 21190300 -196846858 - AluSx SINE Alu 0 312 2 854 173 0 0 chr3 21190457 21190590 -196846568 - AluJb SINE Alu -179 133 1 28 48 0 0 chr3 21190938 21190980 -196846178 + GC_rich Low_complexity Low_complexity 1 42 0 290 392 0 0 chr3 21192611 21192769 -196844389 + G-rich Low_complexity Low_complexity 1 158 0 348 411 0 0 chr3 21192796 21192964 -196844194 + G-rich Low_complexity Low_complexity 1 168 0 24 0 0 0 chr3 21192995 21193019 -196844139 + GC_rich Low_complexity Low_complexity 1 24 0 611 198 0 0 chr3 21193166 21193277 -196843881 - AluJb SINE Alu -200 112 2 620 136 0 9 chr3 21193287 21193397 -196843761 + FLAM_C SINE Alu 32 140 -3 539 175 0 61 chr3 21193489 21193603 -196843555 - AluJb SINE Alu -205 107 1 25 31 0 0 chr3 21193606 21193638 -196843520 + AT_rich Low_complexity Low_complexity 1 32 0 1778 159 17 10 chr3 21193695 21193985 -196843173 - AluJo SINE Alu -20 292 1 1305 221 14 18 chr3 21194021 21194302 -196842856 - AluJo SINE Alu -32 280 1 201 155 17 35 chr3 21194380 21194438 -196842720 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2385 97 3 0 chr3 21194936 21195245 -196841913 + AluSp SINE Alu 1 310 -3 2290 111 0 0 chr3 21195702 21195999 -196841159 - AluSx SINE Alu -15 297 1 289 105 0 0 chr3 21196047 21196085 -196841073 + MER4E LTR ERV1 667 704 -75 1654 163 10 49 chr3 21196250 21196557 -196840601 + AluJb SINE Alu 1 295 -17 1675 65 19 14 chr3 21196869 21197084 -196840074 + AluY SINE Alu 1 216 -95 27 92 0 0 chr3 21197765 21197841 -196839317 + GC_rich Low_complexity Low_complexity 1 76 0 270 227 0 0 chr3 21197864 21197939 -196839219 + A-rich Low_complexity Low_complexity 1 75 0 2101 113 0 17 chr3 21199244 21199545 -196837613 - AluSx SINE Alu -16 296 1 335 346 79 26 chr3 21199577 21199805 -196837353 + L2 LINE L2 3024 3263 -9 1456 128 8 12 chr3 21199818 21200069 -196837089 - MSTA LTR MaLR 0 428 179 2214 113 3 3 chr3 21200073 21200373 -196836785 + AluSx SINE Alu 1 300 -12 1182 101 19 0 chr3 21200374 21200533 -196836625 + AluY SINE Alu 136 297 -14 189 0 0 0 chr3 21201069 21201090 -196836068 + (T)n Simple_repeat Simple_repeat 1 21 0 2116 93 45 45 chr3 21201320 21201632 -196835526 + AluSx SINE Alu 1 312 0 643 193 9 0 chr3 21201650 21201764 -196835394 + FLAM_C SINE Alu 3 117 -26 1808 99 0 0 chr3 21201775 21201997 -196835161 - AluY SINE Alu -89 222 1 183 100 0 0 chr3 21202012 21202042 -196835116 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 802 184 0 0 chr3 21202065 21202201 -196834957 - AluJo SINE Alu -176 136 1 243 0 0 0 chr3 21202902 21202929 -196834229 + (A)n Simple_repeat Simple_repeat 1 27 0 2494 73 0 0 chr3 21203531 21203833 -196833325 - AluSc SINE Alu -7 302 1 22 0 0 0 chr3 21204086 21204108 -196833050 + AT_rich Low_complexity Low_complexity 1 22 0 2364 98 0 3 chr3 21207208 21207503 -196829655 + AluSx SINE Alu 1 294 -18 1969 149 0 34 chr3 21208086 21208124 -196829034 - AluSx SINE Alu 0 312 274 225 0 0 0 chr3 21208124 21208149 -196829009 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1969 149 0 34 chr3 21208149 21208433 -196828725 - AluSx SINE Alu -38 274 1 2235 106 7 10 chr3 21208444 21208746 -196828412 - AluSp SINE Alu -12 301 1 2056 123 7 7 chr3 21208792 21209076 -196828082 - AluSx SINE Alu -28 284 1 866 221 26 40 chr3 21209094 21209320 -196827838 - MER58A DNA MER1_type -1 223 1 1962 133 29 80 chr3 21209489 21209682 -196827476 - THE1B LTR MaLR 0 364 163 2303 127 0 0 chr3 21209682 21209989 -196827169 + AluSg SINE Alu 1 307 -3 2520 90 0 0 chr3 21209989 21210300 -196826858 + AluY SINE Alu 1 311 0 1962 133 29 80 chr3 21210300 21210482 -196826676 - THE1B LTR MaLR -199 165 7 2563 81 0 0 chr3 21210532 21210839 -196826319 - AluSc SINE Alu -2 307 1 543 229 93 0 chr3 21210889 21211029 -196826129 - L1MC5 LINE L1 -67 7894 7742 2638 71 0 0 chr3 21211168 21211479 -196825679 - AluSx SINE Alu 0 312 2 854 173 0 0 chr3 21211636 21211769 -196825389 - AluJb SINE Alu -179 133 1 28 48 0 0 chr3 21212117 21212159 -196824999 + GC_rich Low_complexity Low_complexity 1 42 0 2197 73 16 35 chr3 21213614 21213930 -196823228 - AluSq SINE Alu -3 310 1 1543 152 0 31 chr3 21215020 21215310 -196821848 - AluJo SINE Alu -3 309 29 1850 157 0 0 chr3 21215364 21215663 -196821495 + AluJo SINE Alu 9 307 -5 1653 64 0 0 chr3 21215668 21215870 -196821288 + AluY SINE Alu 1 202 -109 304 159 0 0 chr3 21215875 21215929 -196821229 + AluY SINE Alu 253 299 -9 252 0 0 0 chr3 21216466 21216494 -196820664 + (TA)n Simple_repeat Simple_repeat 2 29 0 2055 113 3 0 chr3 21216516 21216809 -196820349 - AluSq SINE Alu -5 308 15 1705 120 36 29 chr3 21217002 21217311 -196819847 - AluY SINE Alu 0 311 1 1802 128 7 10 chr3 21217315 21217605 -196819553 - AluJb SINE Alu -23 289 1 2007 173 86 18 chr3 21217791 21218173 -196818985 - MSTB LTR MaLR -18 408 1 924 125 0 22 chr3 21218385 21218521 -196818637 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr3 21218629 21218659 -196818499 + (T)n Simple_repeat Simple_repeat 1 30 0 831 128 8 15 chr3 21218787 21218920 -196818238 - FLAM_C SINE Alu -1 132 1 180 0 0 0 chr3 21219063 21219083 -196818075 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 513 188 119 0 chr3 21219083 21219184 -196817974 - FLAM_A SINE Alu -29 113 1 248 244 0 0 chr3 21219288 21219333 -196817825 + MER20 DNA MER1_type 1 45 -174 1798 173 0 10 chr3 21219335 21219647 -196817511 - AluJb SINE Alu 0 312 4 897 119 8 0 chr3 21219828 21219962 -196817196 - AluSq/x SINE Alu -176 136 2 2021 123 3 3 chr3 21220048 21220348 -196816810 - AluSg SINE Alu -10 300 1 234 0 0 0 chr3 21221471 21221497 -196815661 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1235 213 13 43 chr3 21221655 21221955 -196815203 + AluJo SINE Alu 1 291 -21 2146 93 17 10 chr3 21222220 21222522 -196814636 - AluSp SINE Alu -9 304 1 1773 250 60 19 chr3 21222656 21223176 -196813982 - MER74B LTR ERVL -27 595 55 2141 84 10 35 chr3 21223282 21223593 -196813565 - AluSg SINE Alu -7 303 1 1109 139 5 39 chr3 21224683 21224891 -196812267 - AluJo SINE Alu -3 309 109 1535 128 0 4 chr3 21224993 21225220 -196811938 - AluSx SINE Alu -85 227 2 2021 123 3 3 chr3 21225306 21225606 -196811552 - AluSg SINE Alu -10 300 1 234 0 0 0 chr3 21226729 21226755 -196810403 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1235 213 13 43 chr3 21226913 21227213 -196809945 + AluJo SINE Alu 1 291 -21 2146 93 17 10 chr3 21227478 21227780 -196809378 - AluSp SINE Alu -9 304 1 1773 250 60 19 chr3 21227914 21228434 -196808724 - MER74B LTR ERVL -27 595 55 698 50 0 59 chr3 21228527 21228628 -196808530 - AluSg/x SINE Alu 0 312 218 226 209 0 0 chr3 21228628 21228671 -196808487 + Alu SINE Alu 252 294 -7 3366 177 88 45 chr3 21228681 21228716 -196808442 + L1MB2 LINE L1 5281 5313 -858 2050 112 13 10 chr3 21228716 21229028 -196808130 + AluSq SINE Alu 1 313 0 3366 177 88 45 chr3 21229028 21229653 -196807505 + L1MB2 LINE L1 5313 5909 -262 1247 174 55 0 chr3 21229653 21229871 -196807287 - MER30 DNA MER1_type 0 230 1 3366 177 88 45 chr3 21229871 21229958 -196807200 + L1MB2 LINE L1 5909 5991 -180 1308 169 115 32 chr3 21229958 21230237 -196806921 + AluJb SINE Alu 1 302 0 3366 177 88 45 chr3 21230237 21230339 -196806819 + L1MB2 LINE L1 5991 6169 -2 698 252 87 14 chr3 21230334 21230552 -196806606 + L1MB7 LINE L1 5814 6047 -137 * 12398 150 52 18 chr3 21230696 21230807 -196806351 - Tigger1 DNA MER2_type 0 2418 2312 1913 126 44 0 chr3 21230807 21231100 -196806058 + AluSx SINE Alu 1 306 -6 1444 186 31 21 chr3 21231110 21231401 -196805757 + AluJo SINE Alu 1 294 -18 12398 150 52 18 chr3 21231401 21231488 -196805670 - Tigger1 DNA MER2_type -114 2304 2221 2055 114 3 3 chr3 21231488 21231787 -196805371 + AluSq SINE Alu 1 299 -14 12398 150 52 18 chr3 21231787 21233729 -196803429 - Tigger1 DNA MER2_type -197 2221 182 2146 98 7 0 chr3 21233729 21234035 -196803123 + AluSg SINE Alu 1 308 -2 12398 150 52 18 chr3 21234035 21234167 -196802991 - Tigger1 DNA MER2_type -2236 182 56 674 177 57 38 chr3 21234200 21234358 -196802800 + AluJo SINE Alu 4 164 -148 776 98 115 8 chr3 21234376 21234498 -196802660 + AluSg SINE Alu 2 136 -174 2016 69 83 4 chr3 21234506 21234783 -196802375 + AluY SINE Alu 1 299 -12 248 244 44 44 chr3 21234802 21234892 -196802266 - L1MC4 LINE L1 -1339 6703 6614 189 195 0 0 chr3 21234892 21234933 -196802225 + (TA)n Simple_repeat Simple_repeat 2 42 0 2071 89 18 0 chr3 21235676 21235957 -196801201 - AluSc SINE Alu -23 286 1 599 165 9 37 chr3 21236272 21236381 -196800777 + FLAM_C SINE Alu 2 107 -36 1510 159 64 0 chr3 21236390 21236673 -196800485 + AluSx SINE Alu 1 301 -11 609 157 0 82 chr3 21236675 21236809 -196800349 + FRAM SINE Alu 1 40 0 2257 57 0 7 chr3 21237307 21237589 -196799569 + AluY SINE Alu 12 291 -20 193 29 59 0 chr3 21237592 21237626 -196799532 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 1695 175 3 22 chr3 21238013 21238328 -196798830 + AluJo SINE Alu 1 309 -3 2160 113 0 0 chr3 21238555 21238857 -196798301 - AluY SINE Alu -9 302 1 1064 117 0 0 chr3 21238857 21239002 -196798156 - AluSq/x SINE Alu -167 145 1 2038 84 0 30 chr3 21239548 21239891 -196797267 - AluY SINE Alu 0 334 1 2232 89 3 0 chr3 21240332 21240625 -196796533 + AluSg SINE Alu 1 294 -16 238 235 82 24 chr3 21241162 21241247 -196795911 + MIR SINE MIR 169 258 -4 1332 192 0 42 chr3 21241255 21241562 -196795596 - AluJo SINE Alu -18 294 1 232 224 20 20 chr3 21241605 21241654 -196795504 - MIR SINE MIR -213 49 1 1687 133 34 31 chr3 21241811 21242104 -196795054 - AluSx SINE Alu -18 294 1 2162 112 0 10 chr3 21242110 21242423 -196794735 - AluSg SINE Alu 0 310 1 1051 98 7 0 chr3 21242423 21242566 -196794592 - AluSg SINE Alu -166 144 1 434 62 0 0 chr3 21242739 21242804 -196794354 + Alu SINE Alu 241 305 -5 880 200 101 82 chr3 21242819 21243393 -196793765 + L1MC5 LINE L1 7153 7737 -224 847 189 51 46 chr3 21243396 21243592 -196793566 + Tigger2a DNA MER2_type 4 200 -234 792 179 0 0 chr3 21243692 21243809 -196793349 - FLAM_C SINE Alu -15 118 2 355 54 0 54 chr3 21244159 21244215 -196792943 + Alu SINE Alu 248 300 0 1654 176 14 0 chr3 21244522 21244811 -196792347 - AluJb SINE Alu -19 293 1 2137 107 3 0 chr3 21245460 21245759 -196791399 + AluSx SINE Alu 1 300 -12 1484 92 0 14 chr3 21246108 21246315 -196790843 - AluSq SINE Alu -52 261 58 23 0 0 0 chr3 21246396 21246419 -196790739 + AT_rich Low_complexity Low_complexity 1 23 0 1898 114 47 7 chr3 21246913 21247210 -196789948 + AluSq SINE Alu 1 309 -4 1509 174 8 4 chr3 21247358 21247623 -196789535 + AluSx SINE Alu 1 266 -46 1496 191 14 7 chr3 21248094 21248382 -196788776 + AluJb SINE Alu 1 290 -22 621 211 0 0 chr3 21248427 21248531 -196788627 + FLAM_A SINE Alu 9 112 -30 1361 114 5 5 chr3 21248654 21248856 -196788302 - AluSp SINE Alu -9 304 103 2135 93 6 13 chr3 21248966 21249279 -196787879 - AluY SINE Alu 0 311 1 1757 141 28 14 chr3 21249536 21249819 -196787339 + AluSx SINE Alu 1 290 -22 300 91 0 0 chr3 21249819 21249863 -196787295 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 1805 122 50 4 chr3 21249870 21250148 -196787010 + AluSx SINE Alu 1 291 -21 1146 226 7 17 chr3 21250183 21250480 -196786678 + AluJo SINE Alu 6 299 -13 1682 135 4 8 chr3 21251196 21251463 -196785695 - AluSq SINE Alu -11 302 37 2021 113 3 13 chr3 21251701 21252002 -196785156 - AluSg SINE Alu -12 298 1 25 0 0 0 chr3 21252074 21252099 -196785059 + AT_rich Low_complexity Low_complexity 1 25 0 344 119 0 49 chr3 21252353 21252476 -196784682 + AluYa5 SINE Alu 92 287 -14 1925 111 45 0 chr3 21252490 21252779 -196784379 - AluY SINE Alu -9 302 1 1223 225 10 10 chr3 21252883 21253176 -196783982 - AluJb SINE Alu -19 293 1 1821 94 16 0 chr3 21253236 21253492 -196783666 - AluY SINE Alu -15 296 37 2419 182 65 17 chr3 21253604 21253825 -196783333 - L1MA9 LINE L1 -182 6130 5921 1982 139 0 0 chr3 21253825 21254128 -196783030 - AluSx SINE Alu -9 303 1 2419 182 65 17 chr3 21254128 21254195 -196782963 - L1MA9 LINE L1 -391 5921 5859 1735 155 35 0 chr3 21254195 21254485 -196782673 - AluJo SINE Alu -12 300 1 2419 182 65 17 chr3 21254485 21254718 -196782440 - L1MA9 LINE L1 -453 5859 5583 2171 108 0 16 chr3 21254718 21254896 -196782262 - AluSx SINE Alu -1 311 139 2118 98 20 0 chr3 21254896 21255193 -196781965 - AluSp SINE Alu -10 303 1 2171 108 0 16 chr3 21255193 21255330 -196781828 - AluSx SINE Alu -173 139 1 1008 98 0 0 chr3 21255334 21255467 -196781691 - AluSq/x SINE Alu -179 133 1 755 163 54 0 chr3 21255468 21255615 -196781543 - L1MA9 LINE L1 -1899 4247 4093 842 238 28 0 chr3 21255615 21255796 -196781362 + MER20 DNA MER1_type 33 218 -1 1804 118 0 64 chr3 21255850 21256163 -196780995 - AluSx SINE Alu -19 293 1 1999 99 22 0 chr3 21256237 21256536 -196780622 - AluSg SINE Alu 0 305 1 323 143 16 0 chr3 21256538 21256601 -196780557 - L1M3 LINE L1 -687 5493 5430 2022 106 0 0 chr3 21257226 21257508 -196779650 + AluSg SINE Alu 21 302 -8 366 296 37 12 chr3 21257990 21258152 -196779006 - L1M4 LINE L1 -1494 4652 4487 25 0 0 0 chr3 21258238 21258263 -196778895 + AT_rich Low_complexity Low_complexity 1 25 0 943 158 0 0 chr3 21258592 21258766 -196778392 - AluJb SINE Alu 0 307 134 2310 75 3 35 chr3 21259001 21259319 -196777839 - AluSp SINE Alu -5 308 1 240 59 0 0 chr3 21259394 21259428 -196777730 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 1777 119 22 0 chr3 21259428 21259697 -196777461 - AluSq SINE Alu -35 278 4 2335 83 0 3 chr3 21259710 21260022 -196777136 - AluY SINE Alu 0 311 1 1709 161 31 0 chr3 21260088 21260379 -196776779 + AluJb SINE Alu 1 300 -12 2069 193 35 88 chr3 21261794 21262444 -196774714 + LTR6A LTR ERV1 1 564 0 282 379 71 32 chr3 21263181 21263433 -196773725 + L3 LINE CR1 617 858 -719 1717 184 14 10 chr3 21263433 21263727 -196773431 - AluJo SINE Alu -17 295 1 282 379 71 32 chr3 21263727 21263941 -196773217 + L3 LINE CR1 858 1101 -476 199 375 25 0 chr3 21264360 21264440 -196772718 - L2 LINE L2 -222 3050 2969 2234 104 3 0 chr3 21264913 21265212 -196771946 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 21267952 21267974 -196769184 + GC_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 21268284 21268307 -196768851 + (GGCTG)n Simple_repeat Simple_repeat 4 26 0 1840 132 103 0 chr3 21276152 21276425 -196760733 - AluSx SINE Alu -11 301 1 191 206 59 59 chr3 21276844 21276912 -196760246 + L2 LINE L2 3192 3259 -13 2182 108 0 36 chr3 21277412 21277718 -196759440 - AluSx SINE Alu -17 295 1 2286 93 38 0 chr3 21277722 21278013 -196759145 - AluSp SINE Alu -11 302 1 449 34 17 0 chr3 21278287 21278346 -196758812 + (TG)n Simple_repeat Simple_repeat 2 61 0 579 144 14 149 chr3 21278479 21278526 -196758632 + L1MA9 LINE L1 6089 6141 -171 2253 96 14 0 chr3 21278526 21278817 -196758341 - AluSq SINE Alu -14 299 5 579 144 14 149 chr3 21278817 21278838 -196758320 + L1MA9 LINE L1 6141 6163 -149 1821 169 0 41 chr3 21278838 21279158 -196758000 - AluJb SINE Alu -5 307 1 579 144 14 149 chr3 21279158 21279303 -196757855 + L1MA9 LINE L1 6163 6274 -38 779 140 0 29 chr3 21279317 21279453 -196757705 + FLAM_C SINE Alu 2 133 0 2112 151 0 10 chr3 21279463 21279774 -196757384 + AluSx SINE Alu 1 308 -4 439 198 119 10 chr3 21279929 21280030 -196757128 + FLAM_A SINE Alu 1 112 -30 180 0 0 0 chr3 21280031 21280051 -196757107 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 1335 157 17 34 chr3 21280527 21280762 -196756396 - AluJb SINE Alu -77 235 5 255 343 34 14 chr3 21280776 21280922 -196756236 + L2 LINE L2 2934 3082 -190 2354 83 10 13 chr3 21281183 21281485 -196755673 + AluY SINE Alu 1 301 -10 550 185 0 0 chr3 21281486 21281578 -196755580 + AluJ/FLAM SINE Alu 2 93 -219 2275 108 3 0 chr3 21281578 21281875 -196755283 + AluSp SINE Alu 1 298 -15 210 91 0 0 chr3 21282368 21282401 -196754757 + (C)n Simple_repeat Simple_repeat 1 33 0 232 94 38 19 chr3 21282582 21282635 -196754523 + (CACCC)n Simple_repeat Simple_repeat 3 56 0 2120 89 43 0 chr3 21282821 21283102 -196754056 + AluSq SINE Alu 1 293 -20 1307 157 30 34 chr3 21283134 21283369 -196753789 - AluJb SINE Alu -77 235 2 260 207 147 96 chr3 21283897 21284148 -196753010 + L1MC4 LINE L1 7779 8042 0 2241 108 0 3 chr3 21284161 21284466 -196752692 + AluSx SINE Alu 1 304 -8 2074 133 0 7 chr3 21284467 21284760 -196752398 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr3 21284798 21284821 -196752337 + AT_rich Low_complexity Low_complexity 1 23 0 2364 106 0 10 chr3 21285240 21285552 -196751606 + AluSc SINE Alu 1 309 0 803 135 8 0 chr3 21285587 21285713 -196751445 - FLAM_C SINE Alu -6 127 1 2296 101 3 10 chr3 21285719 21286025 -196751133 - AluSp SINE Alu -6 307 4 1935 154 3 20 chr3 21286031 21286336 -196750822 - AluJo SINE Alu -12 300 1 2316 111 0 3 chr3 21286388 21286695 -196750463 - AluSx SINE Alu -6 306 1 1637 82 23 14 chr3 21286698 21286917 -196750241 - AluSq SINE Alu -4 309 89 2534 64 0 10 chr3 21287050 21287362 -196749796 - AluY SINE Alu -2 309 1 655 152 0 0 chr3 21287976 21288081 -196749077 + AluSg/x SINE Alu 194 298 -14 852 170 0 0 chr3 21288083 21288218 -196748940 - AluJo SINE Alu -177 135 1 2124 114 3 7 chr3 21288222 21288512 -196748646 - AluJb SINE Alu -23 289 1 1929 173 86 18 chr3 21288698 21289080 -196748078 - MSTB LTR MaLR -18 408 1 881 125 0 22 chr3 21289292 21289428 -196747730 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr3 21289537 21289567 -196747591 + (T)n Simple_repeat Simple_repeat 1 30 0 792 128 8 15 chr3 21289695 21289828 -196747330 - FLAM_C SINE Alu -1 132 1 180 0 0 0 chr3 21289971 21289991 -196747167 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 489 188 119 0 chr3 21289991 21290092 -196747066 - FLAM_A SINE Alu -29 113 1 247 231 0 103 chr3 21290196 21290243 -196746915 + MER20 DNA MER1_type 1 39 -180 2370 125 0 0 chr3 21290243 21290555 -196746603 - AluSx SINE Alu 0 312 1 247 231 0 103 chr3 21290555 21290585 -196746573 + MER20 DNA MER1_type 39 70 -149 * 282 221 0 0 chr3 21290560 21290628 -196746530 + Charlie2 DNA MER1_type 1817 1884 -978 1897 156 24 0 chr3 21290650 21290945 -196746213 - AluSx SINE Alu -4 308 7 412 190 13 0 chr3 21290961 21291040 -196746118 - FLAM_A SINE Alu -13 120 41 613 261 166 13 chr3 21291067 21291374 -196745784 - L1ME2 LINE L1 -10 6154 5801 344 167 0 0 chr3 21291382 21291442 -196745716 - L1ME2 LINE L1 -833 5313 5254 731 170 0 21 chr3 21291442 21291583 -196745575 - AluSg/x SINE Alu -16 294 157 398 98 0 0 chr3 21291583 21291644 -196745514 + Alu SINE Alu 240 300 -1 1502 195 10 13 chr3 21291649 21291952 -196745206 + AluSq SINE Alu 1 302 -11 2292 101 3 7 chr3 21292143 21292450 -196744708 + AluSg SINE Alu 1 306 -4 207 189 0 0 chr3 21292597 21292650 -196744508 + T-rich Low_complexity Low_complexity 1 53 0 727 113 0 0 chr3 21292650 21292756 -196744402 - AluSq/x SINE Alu -206 107 2 2313 78 24 0 chr3 21292764 21293057 -196744101 - AluSg SINE Alu -8 302 3 951 84 0 0 chr3 21293066 21293185 -196743973 - AluY SINE Alu -7 304 186 1759 75 121 0 chr3 21293185 21293424 -196743734 - AluSx SINE Alu -44 268 1 298 180 0 16 chr3 21293426 21293487 -196743671 + MLT1L LTR MaLR 556 615 0 461 313 65 6 chr3 21293645 21293676 -196743482 - L1M4c LINE L1 -856 1887 1859 2182 111 9 19 chr3 21293676 21293991 -196743167 - AluSx SINE Alu 0 312 1 461 313 65 6 chr3 21293991 21294231 -196742927 - L1M4c LINE L1 -884 1859 1535 2130 110 31 0 chr3 21294231 21294523 -196742635 - AluSc SINE Alu -8 301 1 1507 153 4 4 chr3 21294528 21294757 -196742401 - AluJb SINE Alu -13 299 71 444 37 0 0 chr3 21294760 21294814 -196742344 + (TG)n Simple_repeat Simple_repeat 1 54 0 481 238 0 0 chr3 21294814 21294915 -196742243 - AluJb SINE Alu -33 279 179 1480 117 0 0 chr3 21295172 21295368 -196741790 + AluSg/x SINE Alu 109 304 -8 1959 99 3 48 chr3 21295377 21295692 -196741466 + AluSg SINE Alu 1 302 0 2121 115 37 0 chr3 21295716 21296011 -196741147 + AluSx SINE Alu 1 306 -6 620 200 0 0 chr3 21296060 21296175 -196740983 - MER58A DNA MER1_type 0 156 42 862 152 0 22 chr3 21296180 21296318 -196740840 + AluJb SINE Alu 5 139 -173 2497 90 0 0 chr3 21296318 21296630 -196740528 + AluSx SINE Alu 1 312 0 2560 55 0 0 chr3 21296651 21296943 -196740215 + AluY SINE Alu 1 292 -19 1767 114 0 74 chr3 21297043 21297341 -196739817 + AluSg SINE Alu 27 302 -8 2321 113 0 0 chr3 21297391 21297691 -196739467 + AluSx SINE Alu 1 300 -12 1797 161 10 7 chr3 21297845 21298137 -196739021 + AluSx SINE Alu 1 293 -19 258 164 0 0 chr3 21298248 21298303 -196738855 + (TA)n Simple_repeat Simple_repeat 1 55 0 2245 115 3 0 chr3 21298303 21298599 -196738559 - AluSp SINE Alu -16 297 1 2307 91 7 0 chr3 21298610 21298906 -196738252 - AluY SINE Alu -13 298 1 257 273 128 23 chr3 21298906 21299078 -196738080 + L1MC5 LINE L1 7721 7910 -51 2408 103 3 0 chr3 21299095 21299405 -196737753 - AluSp SINE Alu -2 311 1 294 50 0 0 chr3 21300028 21300068 -196737090 + (TG)n Simple_repeat Simple_repeat 1 40 0 819 213 138 22 chr3 21300121 21300346 -196736812 - AluJb SINE Alu -22 290 40 1523 134 26 105 chr3 21300389 21300526 -196736632 + AluYb8 SINE Alu 1 102 -216 2416 78 0 3 chr3 21300526 21300822 -196736336 + AluY SINE Alu 3 297 -14 1523 134 26 105 chr3 21300822 21300989 -196736169 + AluYb8 SINE Alu 102 281 -37 234 73 24 24 chr3 21300990 21301031 -196736127 - Alu SINE Alu -177 125 85 220 288 18 54 chr3 21302153 21302190 -196734968 + GA-rich Low_complexity Low_complexity 1 38 -697 2207 108 3 0 chr3 21302190 21302516 -196734642 + AluSg SINE Alu 3 329 0 220 288 18 54 chr3 21302516 21302605 -196734553 + GA-rich Low_complexity Low_complexity 38 129 -606 2227 118 0 0 chr3 21302605 21302892 -196734266 + AluSg SINE Alu 1 287 -23 220 288 18 54 chr3 21302892 21302916 -196734242 + GA-rich Low_complexity Low_complexity 129 735 0 311 250 60 0 chr3 21307493 21307577 -196729581 - L2 LINE L2 -2 3270 3182 2425 98 0 0 chr3 21308305 21308612 -196728546 - AluY SINE Alu -2 309 3 201 304 120 0 chr3 21309138 21309230 -196727928 + MIR3 SINE MIR 96 198 -10 201 322 145 7 chr3 21309749 21309901 -196727257 + MIR3 SINE MIR 36 208 0 329 304 35 9 chr3 21310199 21310314 -196726844 + MIR3 SINE MIR 37 154 -54 2366 90 0 3 chr3 21310322 21310623 -196726535 + AluSx SINE Alu 6 305 -7 325 140 0 0 chr3 21311612 21311662 -196725496 - MER66A LTR ERV1 -142 336 287 26 0 0 0 chr3 21312049 21312075 -196725083 + AT_rich Low_complexity Low_complexity 1 26 0 2474 81 7 0 chr3 21312248 21312556 -196724602 - AluYa5 SINE Alu -1 310 1 22 35 0 0 chr3 21312710 21312739 -196724419 + AT_rich Low_complexity Low_complexity 1 29 0 1950 117 81 0 chr3 21313029 21313302 -196723856 - AluSc SINE Alu -14 295 1 852 264 101 47 chr3 21314419 21314672 -196722486 + L1MC4a LINE L1 5177 4912 -1234 2134 127 7 0 chr3 21314672 21314963 -196722195 - AluSx SINE Alu -19 293 1 852 264 101 47 chr3 21314963 21315485 -196721673 + L1MC4a LINE L1 4911 5403 -743 679 213 131 123 chr3 21315556 21315742 -196721416 - L1MD2 LINE L1 -21 6338 6155 192 40 0 0 chr3 21315742 21315767 -196721391 + (TG)n Simple_repeat Simple_repeat 2 26 0 679 213 131 123 chr3 21315767 21315804 -196721354 - L1MD2 LINE L1 -204 6155 6120 257 77 0 51 chr3 21315804 21315843 -196721315 - Alu SINE Alu -244 59 23 679 213 131 123 chr3 21315843 21315993 -196721165 - L1MD2 LINE L1 -239 6120 5923 * 1073 222 89 25 chr3 21315974 21316233 -196720925 - L1MDb LINE L1 -2015 4525 4241 2129 81 30 50 chr3 21316233 21316531 -196720627 - AluY SINE Alu -19 292 1 1073 222 89 25 chr3 21316531 21316586 -196720572 - L1MDb LINE L1 -2299 4241 4191 1433 197 48 24 chr3 21316589 21316884 -196720274 - AluJo SINE Alu -6 306 5 1374 221 106 17 chr3 21316888 21317305 -196719853 - L1MDb LINE L1 -3369 3171 2718 1386 159 8 16 chr3 21317315 21317560 -196719598 + AluJo SINE Alu 23 265 -47 318 50 0 0 chr3 21317572 21317612 -196719546 + (TA)n Simple_repeat Simple_repeat 1 40 0 407 253 48 7 chr3 21317615 21317761 -196719397 - L1MDb LINE L1 -3945 2776 2625 1386 170 27 0 chr3 21317787 21318010 -196719148 - AluJo SINE Alu -83 229 1 3981 193 45 94 chr3 21318010 21318103 -196719055 - L1MDb LINE L1 -3923 2617 2521 2256 115 0 10 chr3 21318103 21318416 -196718742 + AluSq SINE Alu 1 310 -3 3981 193 45 94 chr3 21318416 21318721 -196718437 - L1MDb LINE L1 -4019 2521 2203 790 158 8 8 chr3 21318721 21318848 -196718310 - FLAM_A SINE Alu -6 127 1 3981 193 45 94 chr3 21318848 21318922 -196718236 - L1MDb LINE L1 -4337 2203 2127 2035 138 0 13 chr3 21318922 21319220 -196717938 - AluSx SINE Alu -18 294 1 3981 193 45 94 chr3 21319220 21319346 -196717812 - L1MDb LINE L1 -4413 2127 1996 2196 80 24 7 chr3 21319346 21319634 -196717524 - AluSp SINE Alu -20 293 1 3981 193 45 94 chr3 21319634 21320549 -196716609 - L1MDb LINE L1 -4544 1996 1175 619 288 116 5 chr3 21320553 21320751 -196716407 - L1MDb LINE L1 -5511 1032 813 765 236 36 68 chr3 21321266 21321359 -196715799 - L1MDb LINE L1 -6236 307 213 719 175 0 0 chr3 21321359 21321473 -196715685 + FLAM_C SINE Alu 5 118 -15 312 70 0 0 chr3 21321475 21321518 -196715640 + (CAAT)n Simple_repeat Simple_repeat 3 45 0 765 236 36 68 chr3 21321518 21321703 -196715455 - L1MDb LINE L1 -6331 212 34 2540 62 0 0 chr3 21321831 21322135 -196715023 - AluY SINE Alu -7 304 1 1711 193 0 7 chr3 21322405 21322710 -196714448 - AluJb SINE Alu -9 303 1 7206 138 111 94 chr3 21323131 21324798 -196712360 + pTR5 LTR ERV1 743 2438 0 248 100 0 40 chr3 21328774 21328824 -196708334 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr3 21329868 21329890 -196707268 + AT_rich Low_complexity Low_complexity 1 22 0 2531 72 0 3 chr3 21330409 21330715 -196706443 + AluY SINE Alu 1 305 -6 1865 154 17 3 chr3 21330852 21331144 -196706014 + AluJb SINE Alu 1 296 -16 279 293 120 33 chr3 21331323 21331473 -196705685 + MIR3 SINE MIR 31 193 -15 2480 63 3 0 chr3 21332356 21332658 -196704500 + AluSp SINE Alu 1 303 -10 365 298 8 33 chr3 21333059 21333180 -196703978 - MIR SINE MIR -60 148 31 2153 116 3 0 chr3 21333242 21333534 -196703624 - AluSx SINE Alu -19 293 1 2149 99 0 45 chr3 21333765 21334078 -196703080 + AluSg SINE Alu 1 299 -11 2396 85 0 0 chr3 21334330 21334625 -196702533 + AluSc SINE Alu 1 295 -14 1526 174 23 52 chr3 21334773 21335078 -196702080 + AluJo SINE Alu 1 296 -16 1273 112 0 32 chr3 21335361 21335548 -196701610 - AluSq SINE Alu -132 181 1 2077 101 22 0 chr3 21336566 21336871 -196700287 + AluSx SINE Alu 1 311 0 1525 183 8 0 chr3 21337536 21337798 -196699360 + AluJb SINE Alu 35 298 -14 1913 160 21 0 chr3 21337986 21338273 -196698885 + AluJb SINE Alu 1 293 -19 2482 93 0 0 chr3 21338502 21338812 -196698346 + AluSg SINE Alu 1 310 0 2563 57 0 0 chr3 21339362 21339662 -196697496 + AluY SINE Alu 1 300 -11 332 244 163 49 chr3 21340214 21340337 -196696821 + MIR SINE MIR 20 156 -106 1874 86 21 4 chr3 21340435 21340678 -196696480 - AluSx SINE Alu -21 291 45 1898 141 0 28 chr3 21340790 21341080 -196696078 - AluSx SINE Alu -30 282 1 22 35 0 0 chr3 21341860 21341889 -196695269 + AT_rich Low_complexity Low_complexity 1 29 0 197 33 33 0 chr3 21346917 21346947 -196690211 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 415 287 160 7 chr3 21348402 21348552 -196688606 - MER5A DNA MER1_type 0 189 17 282 361 19 38 chr3 21348542 21348700 -196688458 - MIR3 SINE MIR -12 196 42 * 2324 93 0 13 chr3 21348726 21349039 -196688119 + AluSx SINE Alu 1 309 -3 2744 16 0 7 chr3 21349043 21349380 -196687778 + AluYb8 SINE Alu 1 318 0 692 209 30 32 chr3 21349383 21349526 -196687632 + L1ME LINE L1 5182 5328 -838 2255 93 7 10 chr3 21349526 21349826 -196687332 + AluY SINE Alu 1 299 -12 692 209 30 32 chr3 21349826 21349948 -196687210 + L1ME LINE L1 5328 5449 -717 573 171 195 30 chr3 21350155 21350319 -196686839 - LTR41 LTR ERVL -582 191 1 809 169 0 14 chr3 21350510 21350652 -196686506 - FLAM_C SINE Alu -3 140 1 2192 113 3 3 chr3 21351711 21352004 -196685154 + AluSx SINE Alu 3 295 -17 238 261 29 0 chr3 21352469 21352538 -196684620 - L2 LINE L2 -1529 1785 1715 2439 70 3 10 chr3 21352556 21352857 -196684301 - AluSp SINE Alu -14 299 1 309 279 96 0 chr3 21353595 21353699 -196683459 + L2 LINE L2 3196 3309 -4 182 241 37 19 chr3 21353732 21353786 -196683372 + L3 LINE CR1 1518 1572 -5 1612 186 25 0 chr3 21353916 21354195 -196682963 + AluJb SINE Alu 1 286 -26 24 0 0 0 chr3 21354283 21354307 -196682851 + AT_rich Low_complexity Low_complexity 1 24 0 2283 97 0 7 chr3 21354610 21354910 -196682248 + AluY SINE Alu 1 298 -13 1092 169 0 0 chr3 21354910 21355076 -196682082 + AluJb SINE Alu 137 302 -10 983 220 15 100 chr3 21355077 21355418 -196681740 - L1ME1 LINE L1 -5 6161 5850 1305 116 11 11 chr3 21355419 21355608 -196681550 + AluJo SINE Alu 113 301 -11 674 213 12 62 chr3 21355612 21355772 -196681386 + FAM SINE Alu 1 152 -33 4307 165 46 7 chr3 21355784 21356590 -196680568 + L1MB7 LINE L1 5348 6184 0 718 94 57 0 chr3 21356598 21356704 -196680454 + HY1 scRNA scRNA 1 112 0 1556 192 0 55 chr3 21356718 21357030 -196680128 + AluJb SINE Alu 1 295 -17 1521 177 31 31 chr3 21357132 21357420 -196679738 - AluJb SINE Alu -24 288 1 371 102 0 0 chr3 21357522 21357571 -196679587 - Alu SINE Alu -7 293 245 206 219 0 0 chr3 21357729 21357770 -196679388 + G-rich Low_complexity Low_complexity 5 45 0 345 273 111 6 chr3 21357943 21358115 -196679043 - L1MC5 LINE L1 -51 7910 7721 2206 117 3 0 chr3 21358115 21358413 -196678745 + AluSg SINE Alu 1 299 -11 2054 112 18 0 chr3 21358413 21358688 -196678470 - AluSx SINE Alu -31 281 1 983 109 0 14 chr3 21358688 21358826 -196678332 - AluSq/x SINE Alu -177 136 1 293 254 156 95 chr3 21358829 21359207 -196677951 - L1MC5 LINE L1 -476 7485 7085 1649 165 63 3 chr3 21359274 21359559 -196677599 + AluJb SINE Alu 1 302 -10 2484 48 3 7 chr3 21360628 21360919 -196676239 - AluY SINE Alu -20 291 2 2188 117 0 7 chr3 21361000 21361298 -196675860 - AluSg SINE Alu -14 296 1 180 200 0 0 chr3 21361518 21361548 -196675610 + MIR SINE MIR 116 145 -63 234 0 0 0 chr3 21361607 21361633 -196675525 + (TTG)n Simple_repeat Simple_repeat 2 27 0 27 29 0 0 chr3 21361641 21361675 -196675483 + AT_rich Low_complexity Low_complexity 1 34 0 2186 112 7 0 chr3 21361675 21361961 -196675197 - AluSq SINE Alu -25 288 1 483 51 0 0 chr3 21361961 21362020 -196675138 - AluSq/x SINE Alu -177 136 78 1268 175 0 5 chr3 21362020 21362231 -196674927 - AluSx SINE Alu -100 212 3 1858 175 3 7 chr3 21362236 21362539 -196674619 - AluJo SINE Alu -7 305 4 1924 143 36 0 chr3 21362566 21362846 -196674312 + AluJb SINE Alu 1 290 -22 1625 165 47 26 chr3 21363003 21363428 -196673730 + MER34B LTR ERV1 35 565 0 2234 113 0 7 chr3 21363628 21363937 -196673221 - AluSc SINE Alu -2 307 1 2127 99 0 45 chr3 21364189 21364502 -196672656 - AluSg SINE Alu -11 299 1 259 367 48 14 chr3 21365057 21365204 -196671954 - MIR3 SINE MIR -23 185 34 414 267 105 35 chr3 21365305 21365397 -196671761 + Charlie8 DNA MER1_type 47 131 -2286 1743 162 28 7 chr3 21365397 21365687 -196671471 + AluJb SINE Alu 1 296 -16 414 267 105 35 chr3 21365687 21365766 -196671392 + Charlie8 DNA MER1_type 131 230 -2187 2021 142 0 0 chr3 21365844 21366126 -196671032 + AluSx SINE Alu 1 282 -30 2252 89 3 3 chr3 21366327 21366618 -196670540 + AluSg1 SINE Alu 1 291 -18 1795 153 3 10 chr3 21366694 21366982 -196670176 + AluJb SINE Alu 1 286 -26 2090 106 10 3 chr3 21366989 21367281 -196669877 + AluSx SINE Alu 1 294 -18 1990 113 35 0 chr3 21367551 21367835 -196669323 + AluY SINE Alu 1 294 -17 237 115 94 0 chr3 21367835 21367931 -196669227 + (TA)n Simple_repeat Simple_repeat 2 106 0 782 206 0 22 chr3 21367940 21368076 -196669082 + FLAM_C SINE Alu 1 133 0 1304 161 10 87 chr3 21368137 21368348 -196668810 + L1MC3 LINE L1 6684 6867 -918 2182 127 0 0 chr3 21368348 21368655 -196668503 + AluSx SINE Alu 1 307 -5 1304 161 10 87 chr3 21368655 21368742 -196668416 + L1MC3 LINE L1 6867 6959 -826 5995 50 16 42 chr3 21369995 21371319 -196665839 + SVA Other Other 1 1123 -263 312 94 0 0 chr3 21371319 21371372 -196665786 + (TAAAAA)n Simple_repeat Simple_repeat 2 54 0 1778 137 0 4 chr3 21371375 21371631 -196665527 + AluSg SINE Alu 54 308 -2 390 188 232 29 chr3 21371746 21371884 -196665274 + L1ME1 LINE L1 5996 6161 -5 1602 178 42 0 chr3 21371931 21372218 -196664940 + AluJo SINE Alu 1 299 -13 534 259 30 148 chr3 21372224 21372415 -196664743 + ERVL LTR ERVL 1204 1355 -4409 2303 110 0 0 chr3 21372415 21372716 -196664442 + AluSx SINE Alu 5 305 -7 534 259 30 148 chr3 21372716 21372794 -196664364 + ERVL LTR ERVL 1355 1441 -4323 440 188 12 0 chr3 21372814 21372894 -196664264 - MER58B DNA MER1_type 0 341 261 381 377 14 0 chr3 21372947 21373093 -196664065 + ERVL LTR ERVL 1497 1644 -4120 4947 284 38 23 chr3 21373448 21374024 -196663134 + ERVL LTR ERVL 2172 2738 -3026 417 39 0 0 chr3 21374024 21374075 -196663083 + (CA)n Simple_repeat Simple_repeat 1 51 0 4947 284 38 23 chr3 21374075 21375762 -196661396 + ERVL LTR ERVL 2738 4516 -1248 1997 133 3 10 chr3 21375768 21376062 -196661096 - AluSx SINE Alu -20 292 1 849 153 0 15 chr3 21376073 21376204 -196660954 - FLAM_C SINE Alu -14 129 1 2724 266 103 9 chr3 21376204 21377054 -196660104 + ERVL LTR ERVL 4504 5433 -331 1166 118 0 0 chr3 21377114 21377275 -196659883 - AluSg/x SINE Alu -18 292 132 2379 91 0 0 chr3 21377275 21377571 -196659587 - AluSc SINE Alu -10 299 4 1791 128 56 14 chr3 21377776 21378064 -196659094 + AluSx SINE Alu 1 300 -12 1929 74 0 23 chr3 21378067 21378323 -196658835 + AluY SINE Alu 1 250 -61 1459 178 127 50 chr3 21378517 21378751 -196658407 + Charlie1 DNA MER1_type 2264 2479 -282 2185 101 0 36 chr3 21378751 21379059 -196658099 + AluSg SINE Alu 1 297 -13 1459 178 127 50 chr3 21379059 21379240 -196657918 + Charlie1 DNA MER1_type 2479 2711 -50 1018 167 0 44 chr3 21379633 21379813 -196657345 - FAM SINE Alu 0 175 4 305 238 131 25 chr3 21379961 21380083 -196657075 + L1MC4 LINE L1 7904 8038 -4 1641 178 16 13 chr3 21380083 21380386 -196656772 + AluJo SINE Alu 1 304 -8 1764 158 15 0 chr3 21380585 21380857 -196656301 + AluSx SINE Alu 1 276 -36 2283 109 0 0 chr3 21381285 21381587 -196655571 + AluSg SINE Alu 1 302 -8 345 235 113 75 chr3 21382115 21382328 -196654830 + L1MC5 LINE L1 7603 7823 -138 1834 98 4 0 chr3 21382330 21382566 -196654592 + AluSx SINE Alu 1 237 -75 322 293 81 24 chr3 21382683 21382806 -196654352 + L2 LINE L2 3143 3272 0 25 0 0 0 chr3 21382957 21382982 -196654176 + AT_rich Low_complexity Low_complexity 1 25 0 1329 130 39 10 chr3 21382982 21383189 -196653969 - AluJb SINE Alu -15 297 85 2332 87 0 29 chr3 21383189 21383501 -196653657 - AluY SINE Alu -8 303 1 330 253 67 86 chr3 21383753 21383901 -196653257 - MIR3 SINE MIR -17 191 39 2348 100 3 0 chr3 21383901 21384211 -196652947 - AluSq SINE Alu 0 313 3 330 253 67 86 chr3 21384211 21384230 -196652928 - MIR3 SINE MIR -169 39 21 2047 130 17 3 chr3 21384459 21384759 -196652399 - AluSq SINE Alu -9 304 1 228 207 9 135 chr3 21384782 21384893 -196652265 - MLT1K LTR MaLR -158 430 334 24 53 0 0 chr3 21384899 21384937 -196652221 + AT_rich Low_complexity Low_complexity 1 38 0 951 227 37 29 chr3 21384954 21385227 -196651931 - AluSq SINE Alu -13 300 26 1883 139 0 28 chr3 21385328 21385616 -196651542 - AluSx SINE Alu -32 280 1 1402 205 95 5 chr3 21386433 21386877 -196650281 + Charlie2 DNA MER1_type 2378 2861 -1 1965 147 0 23 chr3 21387112 21387419 -196649739 - AluSx SINE Alu -11 301 2 1446 176 28 38 chr3 21387435 21387589 -196649569 - AluJo SINE Alu -25 287 133 243 0 0 0 chr3 21387589 21387616 -196649542 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2225 92 0 3 chr3 21387617 21387901 -196649257 - AluSx SINE Alu -27 285 3 1446 176 28 38 chr3 21387901 21388034 -196649124 - AluJo SINE Alu -178 134 1 735 144 0 24 chr3 21388042 21388167 -196648991 - L1MC3 LINE L1 -805 6980 6859 1057 174 31 0 chr3 21389009 21389170 -196647988 + FAM SINE Alu 1 166 -9 917 215 155 76 chr3 21389323 21389568 -196647590 + L1M4 LINE L1 4475 4699 -1447 1917 126 0 11 chr3 21389568 21389846 -196647312 + AluSx SINE Alu 1 275 -37 917 215 155 76 chr3 21389846 21390098 -196647060 + L1M4 LINE L1 4699 5011 -1135 653 278 110 8 chr3 21390252 21390515 -196646643 + MER66A LTR ERV1 189 478 0 601 172 25 14 chr3 21390634 21390779 -196646379 + LTR41 LTR ERVL 590 766 -7 275 253 0 55 chr3 21391540 21391631 -196645527 - MIR SINE MIR -106 156 71 1764 267 106 46 chr3 21391793 21392745 -196644413 - L2 LINE L2 -2 3311 2298 3921 177 56 32 chr3 21393020 21394240 -196642918 - L1MB3 LINE L1 -163 6137 4931 1323 186 39 36 chr3 21394240 21394387 -196642771 - AluJo SINE Alu -30 282 132 2418 87 3 3 chr3 21394387 21394698 -196642460 - AluY SINE Alu 0 311 1 1323 186 39 36 chr3 21394698 21394830 -196642328 - AluJo SINE Alu -180 132 2 3921 177 56 32 chr3 21394830 21395173 -196641985 - L1MB3 LINE L1 -1369 4931 4598 2198 82 7 0 chr3 21395206 21395512 -196641646 + AluSx SINE Alu 1 308 0 2023 144 7 0 chr3 21395522 21395821 -196641337 + AluSq SINE Alu 1 301 -12 1783 157 28 3 chr3 21395832 21396119 -196641039 + AluJo SINE Alu 1 294 -18 3123 228 49 14 chr3 21396273 21397197 -196639961 + L1M4 LINE L1 2490 3445 -2701 2043 116 6 42 chr3 21397278 21397589 -196639569 + AluSq SINE Alu 1 300 -13 769 65 0 0 chr3 21397935 21398027 -196639131 + AluY SINE Alu 204 295 -16 484 321 26 41 chr3 21398031 21398299 -196638859 + LTR16C LTR ERVL 195 458 -33 2316 92 3 25 chr3 21398357 21398673 -196638485 + AluSp SINE Alu 1 309 -4 2300 95 0 22 chr3 21398681 21398996 -196638162 + AluSq SINE Alu 1 308 -5 2684 52 0 0 chr3 21400756 21401066 -196636092 + AluY SINE Alu 1 310 -1 208 250 0 0 chr3 21401412 21401452 -196635706 + polypurine Low_complexity Low_complexity 2 41 0 2130 113 10 0 chr3 21402300 21402591 -196634567 + AluSx SINE Alu 1 294 -18 2501 71 0 0 chr3 21403949 21404246 -196632912 - AluSx SINE Alu -15 297 1 2081 137 7 0 chr3 21406465 21406771 -196630387 - AluSq SINE Alu -4 309 2 186 133 0 0 chr3 21406889 21406919 -196630239 + (T)n Simple_repeat Simple_repeat 1 30 0 1573 223 57 60 chr3 21406939 21407625 -196629533 - L1M LINE L1 -744 5402 4716 2101 106 0 17 chr3 21407625 21407917 -196629241 - AluSx SINE Alu -25 287 1 1573 223 57 60 chr3 21407917 21407972 -196629186 - L1M LINE L1 -1430 4716 4662 1891 148 3 28 chr3 21407972 21408289 -196628869 - AluJo SINE Alu -3 309 1 1573 223 57 60 chr3 21408289 21408407 -196628751 - L1M LINE L1 -1484 4662 4562 276 256 199 39 chr3 21409066 21409325 -196627833 + L1ME LINE L1 5450 5758 -406 736 194 104 0 chr3 21409447 21409548 -196627610 + AluJo SINE Alu 19 139 -173 216 0 0 0 chr3 21409548 21409572 -196627586 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 736 194 104 0 chr3 21409572 21409604 -196627554 + AluJo SINE Alu 139 166 -146 26 0 0 0 chr3 21409612 21409638 -196627520 + AT_rich Low_complexity Low_complexity 1 26 0 2005 126 20 3 chr3 21409644 21409937 -196627221 + AluSx SINE Alu 1 298 -14 505 240 106 23 chr3 21409939 21410156 -196627002 + Charlie2 DNA MER1_type 2076 2310 -552 2198 101 17 3 chr3 21410159 21410456 -196626702 + AluSx SINE Alu 1 301 -11 1272 185 31 39 chr3 21410468 21410754 -196626404 - AluJo SINE Alu -28 284 1 261 350 0 12 chr3 21410757 21410837 -196626321 + MIR SINE MIR 47 125 -83 2142 118 20 16 chr3 21411907 21412211 -196624947 - AluSx SINE Alu -7 305 1 813 71 27 0 chr3 21412762 21412874 -196624284 + Charlie1 DNA MER1_type 2165 2279 -482 465 192 0 13 chr3 21412874 21412952 -196624206 + AluJ/FLAM SINE Alu 2 78 -234 2225 114 0 3 chr3 21412953 21413252 -196623906 - AluSq SINE Alu -15 298 1 2231 90 7 10 chr3 21413771 21414070 -196623088 + AluSc SINE Alu 1 298 -11 251 260 0 0 chr3 21414176 21414226 -196622932 - MER5A DNA MER1_type -105 84 35 846 133 51 32 chr3 21414450 21414608 -196622550 + FAM SINE Alu 11 171 -14 1054 182 5 3 chr3 21414642 21414847 -196622311 + AluJb SINE Alu 119 309 -3 565 202 334 25 chr3 21415288 21415605 -196621553 + L2 LINE L2 2154 2568 -746 1292 240 108 28 chr3 21415605 21415818 -196621340 - MLT1F LTR MaLR -124 418 223 2385 65 0 7 chr3 21415818 21416111 -196621047 - AluSc SINE Alu -18 291 1 1292 240 108 28 chr3 21416111 21416284 -196620874 - MLT1F LTR MaLR -319 223 1 181 264 81 58 chr3 21416299 21416386 -196620772 + L2 LINE L2 2023 2111 -1203 626 152 0 0 chr3 21416415 21416514 -196620644 + AluJb SINE Alu 208 306 -6 320 224 71 12 chr3 21416514 21416599 -196620559 + L1MB7 LINE L1 5777 5866 -318 466 273 87 6 chr3 21416736 21416908 -196620250 - L2 LINE L2 -1868 1446 1261 2256 107 7 0 chr3 21418354 21418662 -196618496 + AluSx SINE Alu 1 310 -2 1745 128 56 69 chr3 21418896 21419058 -196618100 - AluSx SINE Alu -12 300 142 2168 67 4 4 chr3 21419058 21419327 -196617831 - AluSq SINE Alu -39 274 6 1745 128 56 69 chr3 21419327 21419468 -196617690 - AluSx SINE Alu -170 142 1 29 47 0 0 chr3 21419528 21419571 -196617587 + AT_rich Low_complexity Low_complexity 1 43 0 2143 80 0 14 chr3 21419961 21420280 -196616878 - AluY SINE Alu 0 315 1 829 254 31 5 chr3 21421183 21421407 -196615751 + L2 LINE L2 2244 2473 -841 972 263 233 12 chr3 21421408 21421552 -196615606 - L2 LINE L2 -1396 1918 1807 2567 64 0 0 chr3 21421552 21421863 -196615295 + AluY SINE Alu 1 311 0 972 263 233 12 chr3 21421863 21422228 -196614930 - L2 LINE L2 -1507 1807 1296 2109 116 13 7 chr3 21422447 21422748 -196614410 - AluSg SINE Alu -7 303 1 839 142 0 17 chr3 21422775 21422895 -196614263 + FLAM_C SINE Alu 10 127 -16 245 231 31 15 chr3 21423889 21423954 -196613204 - MER5A DNA MER1_type -1 188 123 840 174 0 47 chr3 21423960 21424109 -196613049 + AluJo SINE Alu 2 143 -169 1052 202 46 85 chr3 21425025 21425303 -196611855 + AluJo SINE Alu 1 267 -35 2389 66 0 23 chr3 21425303 21425608 -196611550 - AluSq SINE Alu -13 300 3 1052 202 46 85 chr3 21425608 21425636 -196611522 + AluJo SINE Alu 267 295 -7 21 36 0 0 chr3 21426049 21426077 -196611081 + AT_rich Low_complexity Low_complexity 1 28 0 943 154 0 13 chr3 21426077 21426233 -196610925 - AluJb SINE Alu -24 288 135 2224 113 0 38 chr3 21426253 21426345 -196610813 + HSMAR2 DNA Mariner 4 98 -1204 1564 126 0 0 chr3 21426345 21426560 -196610598 + AluSg/x SINE Alu 85 299 -13 2224 113 0 38 chr3 21426560 21426813 -196610345 + HSMAR2 DNA Mariner 98 336 -966 1067 203 11 0 chr3 21426818 21426995 -196610163 + FAM SINE Alu 1 43 -6 4862 105 42 29 chr3 21426995 21427809 -196609349 + HSMAR2 DNA Mariner 339 1120 -182 246 139 0 0 chr3 21427809 21427845 -196609313 + Alu SINE Alu 2 37 -265 26 0 0 0 chr3 21428265 21428291 -196608867 + AT_rich Low_complexity Low_complexity 1 26 0 2183 98 3 0 chr3 21428318 21428604 -196608554 + AluSg SINE Alu 11 297 -13 550 154 29 0 chr3 21428772 21428876 -196608282 - HSMAR2 DNA Mariner -16 1286 1180 2265 122 0 0 chr3 21428876 21429188 -196607970 - AluSx SINE Alu 0 312 1 1040 297 88 22 chr3 21429301 21429792 -196607366 + L1MCc LINE L1 19 541 -5882 1124 252 110 23 chr3 21430072 21430375 -196606783 + L1MCc LINE L1 977 1252 -5650 279 0 0 0 chr3 21430375 21430406 -196606752 + (CA)n Simple_repeat Simple_repeat 2 32 0 1124 252 110 23 chr3 21430406 21431011 -196606147 + L1MCc LINE L1 1252 2013 -4889 * 2539 210 105 26 chr3 21431001 21431341 -196605817 + L1MCc LINE L1 3690 4002 -2939 279 0 0 0 chr3 21431341 21431372 -196605786 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2539 210 105 26 chr3 21431372 21431849 -196605309 + L1MCc LINE L1 4002 4572 -2369 249 253 27 27 chr3 21432640 21432715 -196604443 - MIR SINE MIR -59 149 75 2421 97 50 6 chr3 21433147 21433488 -196603670 + L1PA14 LINE L1 5806 6161 0 2248 93 6 34 chr3 21433564 21433885 -196603273 + AluSq SINE Alu 1 312 -1 510 213 65 46 chr3 21433933 21434041 -196603117 + FLAM_A SINE Alu 1 110 -32 2247 219 75 67 chr3 21434099 21434758 -196602400 - L1MC4 LINE L1 -37 8005 7353 1628 157 0 75 chr3 21434758 21434920 -196602238 - AluJb SINE Alu -18 294 121 2236 93 14 0 chr3 21434920 21435209 -196601949 - AluSx SINE Alu -19 293 1 2058 108 47 7 chr3 21435212 21435508 -196601650 - AluSx SINE Alu -4 308 1 1628 157 0 75 chr3 21435508 21435659 -196601499 - AluJb SINE Alu -193 119 1 2247 219 75 67 chr3 21435659 21435780 -196601378 - L1MC4 LINE L1 -689 7353 7218 767 213 7 33 chr3 21435913 21436063 -196601095 + AluJo SINE Alu 2 147 -165 252 0 0 0 chr3 21436240 21436268 -196600890 + (A)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr3 21437349 21437377 -196599781 + AT_rich Low_complexity Low_complexity 1 28 0 1696 119 0 4 chr3 21437585 21437821 -196599337 - AluSx SINE Alu -77 235 1 789 125 0 0 chr3 21437894 21438006 -196599152 - AluSp/q SINE Alu -10 303 192 672 182 30 172 chr3 21438075 21438278 -196598880 + FAM SINE Alu 2 175 0 1626 183 3 43 chr3 21438299 21438622 -196598536 + AluJo SINE Alu 1 310 -2 1867 161 14 0 chr3 21438624 21438910 -196598248 + AluSx SINE Alu 5 294 -18 27 49 0 0 chr3 21438910 21438951 -196598207 + AT_rich Low_complexity Low_complexity 1 41 0 396 0 0 0 chr3 21438980 21439024 -196598134 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2284 107 0 0 chr3 21439202 21439500 -196597658 + AluY SINE Alu 1 298 -13 2970 103 23 21 chr3 21439715 21440151 -196597007 + MLT2A1 LTR ERVL 1 437 -7 43778 71 17 8 chr3 21440165 21441106 -196596052 + HERVL-A1-A1 LTR ERVL 1 931 -4723 2326 88 0 3 chr3 21441106 21441402 -196595756 + AluSg SINE Alu 1 295 -15 43778 71 17 8 chr3 21441402 21443706 -196593452 + HERVL-A1-A1 LTR ERVL 931 3211 -2443 2190 82 7 0 chr3 21443706 21443975 -196593183 - AluSc SINE Alu -16 293 23 43778 71 17 8 chr3 21443975 21445109 -196592049 + HERVL-A1-A1 LTR ERVL 3211 4333 -1321 2298 88 0 14 chr3 21445109 21445429 -196591729 - AluSx SINE Alu 0 312 1 43778 71 17 8 chr3 21445429 21446647 -196590511 + HERVL-A1-A1 LTR ERVL 4333 5654 0 3120 83 57 5 chr3 21446647 21447069 -196590089 + MLT2A1 LTR ERVL 1 444 0 1833 109 0 86 chr3 21447293 21447597 -196589561 + AluSx SINE Alu 21 298 -14 1635 181 81 16 chr3 21447933 21448424 -196588734 + LTR27 LTR ERV1 3 501 0 312 255 128 0 chr3 21449488 21449582 -196587576 + MIR3 SINE MIR 67 172 -36 24 0 0 0 chr3 21449729 21449753 -196587405 + AT_rich Low_complexity Low_complexity 1 24 0 1353 154 0 5 chr3 21450489 21450697 -196586461 + AluJb SINE Alu 87 293 -19 2154 123 0 13 chr3 21452806 21453108 -196584050 - AluSx SINE Alu -14 298 1 210 71 0 0 chr3 21453501 21453529 -196583629 + (T)n Simple_repeat Simple_repeat 1 28 0 2182 121 6 85 chr3 21453873 21454237 -196582921 - MER1B DNA MER1_type 0 337 3 2283 94 3 26 chr3 21454546 21454855 -196582303 + AluSc SINE Alu 1 302 -7 1664 168 11 25 chr3 21455085 21455371 -196581787 + AluJo SINE Alu 1 282 -30 33 25 0 0 chr3 21455431 21455471 -196581687 + AT_rich Low_complexity Low_complexity 1 40 0 1494 190 40 13 chr3 21455632 21455932 -196581226 + AluJo SINE Alu 1 308 -4 1083 92 0 0 chr3 21456081 21456211 -196580947 - AluSq/x SINE Alu -178 134 5 223 313 34 88 chr3 21456215 21456362 -196580796 + L2 LINE L2 3116 3254 -18 1035 189 6 0 chr3 21456819 21456988 -196580170 - FAM SINE Alu -1 174 5 500 232 0 0 chr3 21457207 21457302 -196579856 - LTR16A1 LTR ERVL 0 457 363 535 219 37 88 chr3 21457327 21457367 -196579791 + L1M4 LINE L1 4541 4581 -1565 2364 97 0 7 chr3 21457367 21457675 -196579483 - AluSg SINE Alu -4 306 1 535 219 37 88 chr3 21457675 21457849 -196579309 + L1M4 LINE L1 4581 4744 -1402 244 230 81 14 chr3 21457851 21457925 -196579233 + MER116 DNA Mariner 2 80 0 198 0 0 0 chr3 21458014 21458036 -196579122 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 604 262 111 5 chr3 21458037 21458243 -196578915 + L1M4 LINE L1 4797 5025 -1121 315 217 0 0 chr3 21458361 21458421 -196578737 + FLAM_A SINE Alu 47 106 -27 340 241 101 70 chr3 21458463 21458638 -196578520 + HAL1 LINE L1 1482 1665 -842 2113 94 0 30 chr3 21458638 21458937 -196578221 + AluSc SINE Alu 1 290 -19 340 241 101 70 chr3 21458937 21458960 -196578198 + HAL1 LINE L1 1665 1686 -821 2318 95 0 3 chr3 21460058 21460362 -196576796 + AluSc SINE Alu 1 303 -6 467 259 133 30 chr3 21460409 21460767 -196576391 + MLT1J2 LTR MaLR 34 450 0 290 241 231 9 chr3 21460767 21460875 -196576283 - MIR3 SINE MIR -42 166 35 659 163 0 0 chr3 21460978 21461076 -196576082 - AluJb SINE Alu -9 303 206 1360 232 0 4 chr3 21461489 21461761 -196575397 + AluJo SINE Alu 10 280 -32 220 167 0 33 chr3 21461764 21461824 -196575334 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2197 116 0 0 chr3 21461832 21462135 -196575023 + AluSx SINE Alu 1 303 -9 2415 93 0 3 chr3 21462160 21462470 -196574688 + AluSx SINE Alu 1 309 -3 290 281 61 0 chr3 21462538 21462620 -196574538 + L3 LINE CR1 1020 1106 -471 651 221 159 12 chr3 21462625 21462788 -196574370 + LTR41 LTR ERVL 1 187 -586 1797 109 8 8 chr3 21463278 21463590 -196573568 + AluSc SINE Alu 26 337 0 192 97 0 0 chr3 21664375 21664406 -196372752 + (ATG)n Simple_repeat Simple_repeat 3 33 0 412 289 100 75 chr3 21664767 21665277 -196371881 + L2 LINE L2 2727 3267 -5 1013 98 0 0 chr3 21665826 21665969 -196371189 - AluY SINE Alu -4 307 165 437 298 64 7 chr3 21666034 21666175 -196370983 + L2 LINE L2 3122 3270 -2 254 250 11 33 chr3 21666277 21666369 -196370789 + MLT1K LTR MaLR 449 538 -50 453 173 45 116 chr3 21666370 21666547 -196370611 + L1ME2 LINE L1 5669 5831 -333 692 240 15 56 chr3 21666547 21666743 -196370415 + MLT1B LTR MaLR 1 188 -186 202 200 0 0 chr3 21666744 21666779 -196370379 + C-rich Low_complexity Low_complexity 2 36 0 923 226 20 5 chr3 21666790 21666989 -196370169 + MLT1B LTR MaLR 189 390 0 1372 93 21 10 chr3 21667087 21667135 -196370023 - MER107 DNA MER1_type -1 196 150 237 65 0 0 chr3 21667135 21667166 -196369992 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1372 93 21 10 chr3 21667166 21667311 -196369847 - MER107 DNA MER1_type -47 150 1 1998 317 78 36 chr3 21667319 21667985 -196369173 - LTR8A LTR ERV1 0 727 34 659 261 40 22 chr3 21667991 21668016 -196369142 + L1ME2 LINE L1 5927 5950 -214 2343 53 0 0 chr3 21668016 21668323 -196368835 + AluY SINE Alu 1 307 0 659 261 40 22 chr3 21668323 21668522 -196368636 + L1ME2 LINE L1 5950 6156 -8 493 290 12 0 chr3 21668767 21668929 -196368229 + GA-rich Low_complexity Low_complexity 2 165 0 319 259 0 0 chr3 21670395 21670476 -196366682 + MIR SINE MIR 55 135 -127 221 221 10 0 chr3 21670904 21671008 -196366150 + (TG)n Simple_repeat Simple_repeat 2 106 0 299 126 35 11 chr3 21671188 21671275 -196365883 + (TG)n Simple_repeat Simple_repeat 2 90 0 210 277 12 0 chr3 21671294 21671377 -196365781 + (TG)n Simple_repeat Simple_repeat 2 85 0 287 366 66 36 chr3 21671493 21671796 -196365362 + L2 LINE L2 2988 3299 -14 239 316 72 36 chr3 21671803 21671942 -196365216 - L2 LINE L2 -27 3245 3102 200 244 139 23 chr3 21672117 21672203 -196364955 + MIR SINE MIR 5 100 -162 3864 153 70 9 chr3 21672274 21672973 -196364185 - Tigger3(Golem) DNA MER2_type -4 3025 2284 504 262 9 0 chr3 21672973 21673080 -196364078 - Tigger3(Golem) DNA MER2_type -2921 108 1 620 238 13 7 chr3 21673081 21673167 -196363991 - MIR SINE MIR -24 238 149 1677 175 0 38 chr3 21673167 21673487 -196363671 - AluJb SINE Alu -2 310 3 620 238 13 7 chr3 21673487 21673551 -196363607 - MIR SINE MIR -113 149 87 230 204 0 0 chr3 21674194 21674210 -196362948 - L2 LINE L2 -1 3312 3264 233 91 0 0 chr3 21674210 21674243 -196362915 - MIR SINE MIR -11 251 219 262 284 84 0 chr3 21674325 21674420 -196362738 + MIR SINE MIR 14 116 -146 252 320 39 0 chr3 21674469 21674572 -196362586 + L2 LINE L2 3004 3110 -162 438 291 64 41 chr3 21674585 21674757 -196362401 - MIR3 SINE MIR -16 192 17 439 295 13 20 chr3 21674774 21674923 -196362235 + MIR SINE MIR 3 150 -58 639 227 68 17 chr3 21675038 21675214 -196361944 + MIR SINE MIR 60 244 -18 261 176 59 12 chr3 21675408 21675493 -196361665 + Charlie7 DNA MER1_type 2450 2538 -74 292 331 84 7 chr3 21675588 21675730 -196361428 - MIR SINE MIR -35 227 75 483 170 0 0 chr3 21675840 21675940 -196361218 + (CA)n Simple_repeat Simple_repeat 2 101 0 2745 242 170 5 chr3 21676421 21677257 -196359901 - L1MDa LINE L1 -5341 1199 226 809 92 9 0 chr3 21677587 21677696 -196359462 + FRAM SINE Alu 50 159 -17 203 292 28 0 chr3 21677972 21678044 -196359114 - L2 LINE L2 -291 2981 2908 2116 172 7 63 chr3 21678162 21678574 -196358584 - MLT1B LTR MaLR -1 389 1 198 337 109 11 chr3 21678580 21678755 -196358403 - L2 LINE L2 -579 2735 2544 341 206 76 0 chr3 21678935 21679027 -196358131 + L1MDa LINE L1 1646 1744 -4796 293 300 3 10 chr3 21679110 21679243 -196357915 - L1P LINE L1 -2471 3675 3543 2927 182 30 17 chr3 21679301 21679900 -196357258 - L1ME1 LINE L1 -93 6073 5467 199 284 136 12 chr3 21680713 21680794 -196356364 - MIR SINE MIR -102 106 16 232 186 0 68 chr3 21681067 21681126 -196356032 - L2 LINE L2 -2 3270 3216 278 305 34 42 chr3 21681181 21681299 -196355859 + MIR SINE MIR 135 251 -11 387 278 161 22 chr3 21681389 21681569 -196355589 + MIR SINE MIR 2 206 -56 230 238 155 0 chr3 21681572 21681656 -196355502 + MLT1H LTR MaLR 8 104 -445 737 246 89 59 chr3 21681766 21682199 -196354959 - L1ME2 LINE L1 -144 6020 5579 684 194 14 58 chr3 21682202 21682341 -196354817 + FLAM_A SINE Alu 1 133 0 180 222 37 49 chr3 21682808 21682889 -196354269 - L2 LINE L2 -283 2989 2910 577 332 5 5 chr3 21682939 21683129 -196354029 - MIR SINE MIR -28 234 45 511 261 59 15 chr3 21683820 21684023 -196353135 - MER102a DNA MER1_type 0 330 119 180 0 0 0 chr3 21684023 21684043 -196353115 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1111 188 0 20 chr3 21684045 21684247 -196352911 - AluJb SINE Alu -30 282 85 338 281 30 30 chr3 21684247 21684382 -196352776 - MER102a DNA MER1_type -194 136 2 372 247 79 18 chr3 21684386 21684550 -196352608 - MIR SINE MIR -63 145 15 973 267 4 4 chr3 21684737 21684977 -196352181 + MIR SINE MIR 18 257 -5 2240 97 3 0 chr3 21684978 21685278 -196351880 + AluSp SINE Alu 1 301 -12 335 260 60 10 chr3 21685292 21685392 -196351766 - L2 LINE L2 -8 3305 3201 2309 75 23 0 chr3 21686298 21686604 -196350554 - AluSq SINE Alu 0 313 1 204 40 0 0 chr3 21686674 21686699 -196350459 + (GA)n Simple_repeat Simple_repeat 2 26 0 708 277 55 18 chr3 21686845 21687065 -196350093 - MIR SINE MIR -1 261 34 228 200 0 0 chr3 21687417 21687467 -196349691 + (TG)n Simple_repeat Simple_repeat 2 51 0 38 0 0 0 chr3 21687490 21687528 -196349630 + GC_rich Low_complexity Low_complexity 1 38 0 423 0 0 0 chr3 21688037 21688084 -196349074 + (TG)n Simple_repeat Simple_repeat 1 47 0 226 276 0 20 chr3 21688233 21688331 -196348827 + (TG)n Simple_repeat Simple_repeat 1 96 0 21 36 0 0 chr3 21688876 21688904 -196348254 + AT_rich Low_complexity Low_complexity 1 28 0 252 370 0 0 chr3 21688995 21689087 -196348071 + MIR SINE MIR 45 136 -72 479 269 17 8 chr3 21689593 21689712 -196347446 + MIR SINE MIR 25 144 -118 790 154 27 34 chr3 21689718 21689867 -196347291 - MLT2B3 LTR ERVL -274 280 133 258 273 13 13 chr3 21689927 21690004 -196347154 + MIR SINE MIR 151 227 -35 195 69 0 0 chr3 21690007 21690036 -196347122 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr3 21690070 21690093 -196347065 + (CAT)n Simple_repeat Simple_repeat 3 25 0 581 260 91 0 chr3 21690240 21690394 -196346764 - MIR SINE MIR -2 260 93 482 277 8 8 chr3 21690400 21690530 -196346628 - LTR67 LTR ERVL 0 557 428 2538 152 36 10 chr3 21690854 21691269 -196345889 - MSTB LTR MaLR 0 426 1 334 200 36 91 chr3 21691348 21691458 -196345700 - MLT1H LTR MaLR 0 549 446 * 2434 143 133 11 chr3 21691453 21691895 -196345263 - MLT2B3 LTR ERVL -58 496 1 539 269 93 16 chr3 21692001 21692183 -196344975 + MLT1L LTR MaLR 420 615 0 326 235 20 31 chr3 21692253 21692351 -196344807 - MIR SINE MIR -152 110 14 312 244 33 0 chr3 21692718 21692808 -196344350 + MER117 DNA MER1_type 1 93 -104 361 301 68 8 chr3 21692904 21693037 -196344121 + MIR3 SINE MIR 37 177 -31 394 222 16 48 chr3 21693902 21694028 -196343130 - MER5A DNA MER1_type -24 165 44 186 224 119 45 chr3 21694122 21694189 -196342969 - L3 LINE CR1 -136 1441 1370 841 138 0 0 chr3 21694463 21694586 -196342572 + FLAM_C SINE Alu 1 123 -20 341 270 20 0 chr3 21694699 21694799 -196342359 + MIR SINE MIR 42 143 -65 360 350 42 0 chr3 21695404 21695547 -196341611 + MIR SINE MIR 109 257 -5 1876 112 40 4 chr3 21695561 21695837 -196341321 + L1PB3 LINE L1 5867 6152 -2 529 189 101 162 chr3 21696321 21696649 -196340509 + MLT1K LTR MaLR 207 514 -74 359 305 51 0 chr3 21697121 21697239 -196339919 - MIR3 SINE MIR -76 132 9 274 289 22 0 chr3 21697329 21697419 -196339739 - L2 LINE L2 -250 3022 2931 807 262 87 0 chr3 21697468 21697674 -196339484 - MIR SINE MIR -19 243 20 3029 138 34 19 chr3 21698004 21698475 -196338683 + MER66A LTR ERV1 1 478 0 237 167 19 37 chr3 21698745 21698799 -196338359 - MIR SINE MIR -21 241 189 1044 167 5 30 chr3 21698810 21699008 -196338150 + AluJo SINE Alu 1 193 -119 3272 162 20 20 chr3 21699008 21699618 -196337540 - LTR5 LTR ERVK 0 969 360 288 200 0 0 chr3 21699723 21699793 -196337365 + GA-rich Low_complexity Low_complexity 2 71 0 898 95 0 0 chr3 21700185 21700311 -196336847 - L1MC/D LINE L1 -668 5665 5540 975 254 29 32 chr3 21700562 21700616 -196336542 - MER113 DNA MER1_type? -155 366 313 5610 126 51 5 chr3 21700616 21700703 -196336455 - L1MC1 LINE L1 -1 6332 6250 2882 129 19 2 chr3 21700703 21701122 -196336036 + MSTA LTR MaLR 1 426 -2 5610 126 51 5 chr3 21701122 21701878 -196335280 - L1MC1 LINE L1 -83 6250 5450 975 254 29 32 chr3 21701878 21702138 -196335020 - MER113 DNA MER1_type? -208 313 53 312 297 73 6 chr3 21702763 21702928 -196334230 + LTR16A1 LTR ERVL 193 368 -89 362 286 108 31 chr3 21703002 21703289 -196333869 - L2 LINE L2 -999 2315 2007 507 226 76 45 chr3 21704256 21704596 -196332562 - LTR23 LTR ERV1 -59 378 4 1481 240 66 33 chr3 21704632 21705119 -196332039 - MER90 LTR ERV1 -72 503 1 301 167 106 0 chr3 21705281 21705347 -196331811 - L1ME3 LINE L1 -66 6096 6024 259 289 133 15 chr3 21705392 21705527 -196331631 - L1ME3 LINE L1 -225 5941 5791 667 283 11 0 chr3 21705688 21705872 -196331286 + L1MC1 LINE L1 5053 5238 -908 1872 140 10 16 chr3 21706001 21706309 -196330849 + AluJo SINE Alu 1 306 -6 339 313 9 9 chr3 21706377 21706489 -196330669 - MIR SINE MIR -71 191 80 227 315 67 0 chr3 21707170 21707259 -196329899 + MIR SINE MIR 21 115 -147 227 309 209 0 chr3 21707410 21707520 -196329638 - L2 LINE L2 -2 3270 3138 213 350 111 20 chr3 21707940 21708237 -196328921 - L2 LINE L2 -29 3243 2920 894 284 108 27 chr3 21708435 21708878 -196328280 + L2 LINE L2 2830 3308 -5 323 346 44 6 chr3 21709472 21709654 -196327504 + L1MC1 LINE L1 5637 5825 -1983 256 312 46 28 chr3 21709982 21710091 -196327067 + MIR SINE MIR 35 145 -63 345 281 52 0 chr3 21710123 21710219 -196326939 + MER91C DNA MER1_type 38 138 -2 540 266 35 55 chr3 21710663 21710808 -196326350 + MIR SINE MIR 62 203 -59 1650 149 28 14 chr3 21710808 21711097 -196326061 + AluJo SINE Alu 4 296 -16 540 266 35 55 chr3 21711097 21711150 -196326008 + MIR SINE MIR 203 256 -6 1009 204 38 8 chr3 21711362 21711602 -196325556 + L1MC1 LINE L1 6004 6250 -83 426 262 136 22 chr3 21712770 21712996 -196324162 + MIR SINE MIR 7 247 -15 381 281 148 0 chr3 21713080 21713208 -196323950 + MIR SINE MIR 116 262 0 208 258 74 61 chr3 21713789 21713952 -196323206 + L2 LINE L2 2469 2633 -681 2434 227 122 82 chr3 21714099 21714430 -196322728 - MER69B DNA AcHobo -1339 1187 871 351 44 0 0 chr3 21714430 21714475 -196322683 + (CA)n Simple_repeat Simple_repeat 2 46 0 2434 227 122 82 chr3 21714475 21715285 -196321873 - MER69B DNA AcHobo -1655 871 1 359 219 133 19 chr3 21715285 21715390 -196321768 + MIR SINE MIR 116 232 -30 5267 113 20 75 chr3 21715390 21715805 -196321353 - Tigger1 DNA MER2_type 0 2418 1982 2228 120 3 0 chr3 21715805 21716106 -196321052 + AluSc SINE Alu 2 303 -6 5267 113 20 75 chr3 21716106 21716685 -196320473 - Tigger1 DNA MER2_type -436 1982 1479 6987 97 136 123 chr3 21716688 21718361 -196318797 - pTR5 LTR ERV1 0 2438 743 9076 122 21 18 chr3 21718361 21719082 -196318076 - Tigger1 DNA MER2_type -936 1482 765 2173 113 3 0 chr3 21719082 21719398 -196317760 + AluSx SINE Alu 1 317 0 9076 122 21 18 chr3 21719398 21720152 -196317006 - Tigger1 DNA MER2_type -1653 765 1 195 300 50 0 chr3 21720396 21720456 -196316702 - L3 LINE CR1 -99 1478 1416 829 271 146 10 chr3 21720850 21721284 -196315874 - L2 LINE L2 -59 3254 2754 368 281 73 0 chr3 21721755 21721851 -196315307 - MER91B DNA MER1_type -3 187 85 249 83 0 0 chr3 21722714 21722750 -196314408 + (CA)n Simple_repeat Simple_repeat 2 37 0 508 264 135 7 chr3 21722969 21723117 -196314041 + L3 LINE CR1 1375 1541 -36 189 222 0 0 chr3 21723113 21723149 -196314009 - L2 LINE L2 -20 3252 3217 * 505 236 90 28 chr3 21723165 21723343 -196313815 + MER117 DNA MER1_type 3 191 -6 386 239 215 23 chr3 21723354 21723484 -196313674 - MIR SINE MIR -105 157 3 2133 113 10 0 chr3 21724564 21724857 -196312301 + AluSx SINE Alu 1 296 -16 304 28 0 0 chr3 21726059 21726095 -196311063 - MER4A LTR ERV1 -75 589 554 2433 89 10 3 chr3 21726991 21727304 -196309854 - LTR5 LTR ERVK -654 315 1 310 148 56 0 chr3 21727305 21727357 -196309801 + AluJb SINE Alu 190 244 -58 3024 55 23 39 chr3 21727357 21727795 -196309363 + LTR7 LTR ERV1 1 431 -19 442 138 0 0 chr3 21727795 21727860 -196309298 + AluJb SINE Alu 225 289 -23 335 215 15 0 chr3 21727869 21727934 -196309224 - MIR SINE MIR -78 184 119 2059 110 13 41 chr3 21728160 21728293 -196308865 + AluSx SINE Alu 2 137 -175 2250 109 3 10 chr3 21728293 21728604 -196308554 + AluSc SINE Alu 1 309 0 2059 110 13 41 chr3 21728604 21728787 -196308371 + AluSx SINE Alu 137 309 -3 370 310 223 13 chr3 21728810 21729200 -196307958 + L1MC4a LINE L1 5419 5890 -1918 3738 219 51 47 chr3 21729210 21729260 -196307898 + L1MD2 LINE L1 5122 5170 -1189 1893 149 7 7 chr3 21729260 21729555 -196307603 + AluJo SINE Alu 1 295 -17 3738 219 51 47 chr3 21729555 21730718 -196306440 + L1MD2 LINE L1 5170 6347 -12 2192 150 40 6 chr3 21731003 21731356 -196305802 - MLT1A1 LTR MaLR 0 365 1 333 0 0 0 chr3 21731548 21731585 -196305573 + (CA)n Simple_repeat Simple_repeat 2 38 0 380 233 118 21 chr3 21731701 21731889 -196305269 - MIR SINE MIR -19 243 27 524 293 62 5 chr3 21732310 21732573 -196304585 + L1ME3A LINE L1 5724 6002 -168 200 286 36 36 chr3 21732654 21732738 -196304420 + MIR SINE MIR 108 191 -71 242 289 0 78 chr3 21733155 21733245 -196303913 + MIR3 SINE MIR 82 164 -44 1499 208 17 7 chr3 21733917 21734206 -196302952 - AluJo SINE Alu -12 300 9 281 252 48 48 chr3 21734662 21734765 -196302393 - L1ME LINE L1 -521 5643 5541 867 239 132 31 chr3 21734913 21735366 -196301792 - MLT1G1 LTR MaLR 0 595 10 2474 104 109 3 chr3 21735618 21736004 -196301154 - MSTA LTR MaLR 0 428 2 268 256 78 56 chr3 21736287 21736377 -196300781 - L2 LINE L2 -186 3086 2995 806 154 19 39 chr3 21736377 21736533 -196300625 + AluJb SINE Alu 38 190 -122 3899 132 37 55 chr3 21736533 21737258 -196299900 + MER50 LTR ERV1 1 712 -22 703 146 18 0 chr3 21737261 21737371 -196299787 + AluJb SINE Alu 190 301 -11 281 267 103 27 chr3 21738995 21739141 -196298017 + L1ME4a LINE L1 5733 5889 -232 635 285 131 23 chr3 21739222 21739767 -196297391 + L2 LINE L2 2388 3036 -236 1176 264 82 9 chr3 21740195 21740536 -196296622 + MLT1K LTR MaLR 215 580 -8 2353 286 62 26 chr3 21741506 21741646 -196295512 + L1ME3 LINE L1 3901 4035 -2111 180 0 0 0 chr3 21741646 21741666 -196295492 + (CA)n Simple_repeat Simple_repeat 1 20 0 2353 286 62 26 chr3 21741666 21742678 -196294480 + L1ME3 LINE L1 4035 5094 -1052 559 224 59 46 chr3 21742683 21742776 -196294382 + L1ME3 LINE L1 5209 5299 -863 1828 167 3 22 chr3 21742776 21743087 -196294071 + AluJb SINE Alu 1 305 -7 559 224 59 46 chr3 21743087 21743248 -196293910 + L1ME3 LINE L1 5299 5470 -692 628 294 78 36 chr3 21743276 21743633 -196293525 + LTR16A LTR ERVL 76 447 -3 1297 226 83 92 chr3 21743645 21744308 -196292850 + L1ME3 LINE L1 5506 6162 0 197 250 0 0 chr3 21744342 21744382 -196292776 - MIR SINE MIR -1 261 222 261 0 0 0 chr3 21744414 21744443 -196292715 + (CA)n Simple_repeat Simple_repeat 1 29 0 410 297 11 0 chr3 21744470 21744645 -196292513 + (CA)n Simple_repeat Simple_repeat 2 178 0 261 239 29 145 chr3 21744906 21744977 -196292181 - L2 LINE L2 -555 2759 2710 1983 156 0 9 chr3 21744977 21745292 -196291866 + AluJb SINE Alu 1 312 0 261 239 29 145 chr3 21745292 21745358 -196291800 - L2 LINE L2 -604 2710 2638 848 158 0 0 chr3 21745704 21745837 -196291321 - FLAM_A SINE Alu 0 133 1 531 242 87 34 chr3 21745837 21746101 -196291057 + MER102b DNA MER1_type 63 340 -1 683 275 143 45 chr3 21746121 21746461 -196290697 + L1ME3 LINE L1 5477 5869 -293 231 114 0 0 chr3 21746461 21746496 -196290662 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 683 275 143 45 chr3 21746496 21746581 -196290577 + L1ME3 LINE L1 5869 5944 -218 37 69 0 0 chr3 21746752 21746824 -196290334 + AT_rich Low_complexity Low_complexity 1 72 0 2011 160 0 3 chr3 21746824 21747131 -196290027 + AluJb SINE Alu 1 306 -6 2175 239 46 75 chr3 21747167 21747329 -196289829 - L1ME2 LINE L1 -32 6132 5967 1903 114 3 42 chr3 21747329 21747644 -196289514 - AluSx SINE Alu 0 308 5 2175 239 46 75 chr3 21747644 21748354 -196288804 - L1ME2 LINE L1 -197 5967 5238 2328 110 0 0 chr3 21748354 21748662 -196288496 - AluSx SINE Alu -4 308 1 2175 239 46 75 chr3 21748662 21748727 -196288431 - L1ME2 LINE L1 -926 5238 5173 330 26 0 0 chr3 21748727 21748766 -196288392 + (CA)n Simple_repeat Simple_repeat 2 40 0 2175 239 46 75 chr3 21748766 21749094 -196288064 - L1ME2 LINE L1 -991 5173 4891 1242 145 16 57 chr3 21749094 21749342 -196287816 + AluJo SINE Alu 1 238 -74 312 281 47 31 chr3 21749480 21749608 -196287550 - L2 LINE L2 -24 3248 3119 238 239 0 0 chr3 21749695 21749741 -196287417 + L3 LINE CR1 892 937 -640 668 306 125 4 chr3 21750623 21750904 -196286254 - L2 LINE L2 -2 3270 2956 407 245 71 5 chr3 21751008 21751162 -196285996 + MIR SINE MIR 14 171 -61 387 260 177 21 chr3 21751871 21752063 -196285095 - MIR SINE MIR -13 249 28 210 282 154 0 chr3 21752073 21752190 -196284968 - MIR3 SINE MIR -29 179 45 312 239 77 34 chr3 21752533 21752650 -196284508 + MLT1K LTR MaLR 167 288 -300 302 301 68 28 chr3 21752912 21753088 -196284070 - MLT1L LTR MaLR -221 394 212 729 0 0 0 chr3 21753125 21753206 -196283952 + (TTTTA)n Simple_repeat Simple_repeat 1 81 0 1803 162 0 14 chr3 21753206 21753490 -196283668 - AluJo SINE Alu -32 280 1 532 211 102 0 chr3 21754168 21754296 -196282862 + MIR SINE MIR 109 249 -13 751 133 0 0 chr3 21754325 21754430 -196282728 - FLAM_A SINE Alu -13 129 25 1513 217 65 5 chr3 21755004 21755373 -196281785 - MLT1J2 LTR MaLR -22 428 38 380 364 6 6 chr3 21755431 21755593 -196281565 + L2 LINE L2 2625 2786 -528 781 220 70 5 chr3 21756031 21756217 -196280941 + MER63A DNA MER1_type 3 200 -10 500 283 17 0 chr3 21756230 21756376 -196280782 - MIR SINE MIR -42 166 14 249 302 0 31 chr3 21756387 21756483 -196280675 + L2 LINE L2 2965 3057 -215 239 167 21 21 chr3 21757142 21757190 -196279968 - MIR SINE MIR -65 143 96 211 235 15 29 chr3 21757181 21757249 -196279909 + L2 LINE L2 2938 3004 -309 * 473 323 56 5 chr3 21757319 21757514 -196279644 + MIR SINE MIR 50 254 -8 184 301 26 92 chr3 21758234 21758387 -196278771 - MIR3 SINE MIR -34 174 32 1646 144 41 0 chr3 21759031 21759302 -196277856 + AluJo SINE Alu 21 302 -10 2835 158 17 30 chr3 21759643 21759957 -196277201 + L1MB8 LINE L1 5647 5953 -225 1479 195 152 83 chr3 21759957 21760556 -196276602 - LTR48B LTR ERV1 0 644 5 2835 158 17 30 chr3 21760556 21760780 -196276378 + L1MB8 LINE L1 5953 6178 0 1355 222 74 15 chr3 21760797 21761202 -196275956 - MLT1C LTR MaLR -5 462 34 259 70 93 0 chr3 21761349 21761392 -196275766 - L2 LINE L2 -210 3062 3016 419 294 40 0 chr3 21761403 21761529 -196275629 + MER94 DNA DNA 3 133 -1 251 224 0 53 chr3 21761563 21761639 -196275519 - L2 LINE L2 -285 2987 2916 275 49 24 0 chr3 21762135 21762176 -196274982 + (TG)n Simple_repeat Simple_repeat 2 43 0 1016 270 146 33 chr3 21762556 21763096 -196274062 + L2 LINE L2 2034 2634 -680 653 203 0 7 chr3 21763298 21763451 -196273707 + GA-rich Low_complexity Low_complexity 4 155 0 4184 237 55 20 chr3 21763592 21763753 -196273405 + L1MDa LINE L1 2452 2606 -3934 2201 60 45 0 chr3 21763753 21764050 -196273108 + AluY SINE Alu 1 309 0 4184 237 55 20 chr3 21764050 21765376 -196271782 + L1MDa LINE L1 2606 4004 -2536 1208 221 39 66 chr3 21765377 21765784 -196271374 - MLT2C1 LTR ERVL -1 396 1 3068 170 97 2 chr3 21765784 21766390 -196270768 - ERVL-C1 LTR ERVL -8 5756 5093 506 252 97 53 chr3 21766392 21766458 -196270700 - ERVL-C1 LTR ERVL -5548 216 154 2209 155 9 6 chr3 21766458 21766794 -196270364 + MER1B DNA MER1_type 1 337 0 506 252 97 53 chr3 21766794 21766933 -196270225 - ERVL-C1 LTR ERVL -5610 154 2 947 233 72 4 chr3 21766934 21767196 -196269962 - MLT2C1 LTR ERVL 0 397 118 247 294 135 24 chr3 21767498 21767624 -196269534 - MIR SINE MIR -74 188 49 1090 286 10 13 chr3 21767776 21768080 -196269078 + MLT1K LTR MaLR 170 472 -116 258 265 0 29 chr3 21768132 21768200 -196268958 - L3 LINE CR1 -197 1380 1315 185 260 20 20 chr3 21768220 21768270 -196268888 + MIR SINE MIR 29 78 -184 373 301 49 0 chr3 21768382 21768505 -196268653 + L2 LINE L2 3176 3304 -9 818 252 172 54 chr3 21769283 21769328 -196267830 + L2 LINE L2 2677 2715 -598 1280 173 13 18 chr3 21769328 21769553 -196267605 - MER58A DNA MER1_type 0 224 1 818 252 172 54 chr3 21769553 21770071 -196267087 + L2 LINE L2 2715 3313 0 423 359 39 9 chr3 21770091 21770322 -196266836 + L2 LINE L2 2618 2855 -459 180 321 38 0 chr3 21771507 21771560 -196265598 - L2 LINE L2 -48 3224 3170 913 0 27 0 chr3 21771571 21771683 -196265475 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1934 141 3 7 chr3 21771685 21771969 -196265189 - AluSx SINE Alu -29 283 1 309 317 49 0 chr3 21771984 21772107 -196265051 - L3 LINE CR1 -73 1504 1376 291 272 272 0 chr3 21772589 21772714 -196264444 - MIR3 SINE MIR -8 200 42 2733 273 138 24 chr3 21772958 21774394 -196262764 - L2 LINE L2 -5 3308 1710 241 384 10 10 chr3 21774701 21774800 -196262358 - L2 LINE L2 -213 3059 2961 257 154 0 0 chr3 21774806 21774845 -196262313 - HERVK3 LTR ERVK -7203 40 2 2112 175 49 15 chr3 21774855 21775266 -196261892 - LTR3 LTR ERVK -3 429 5 7048 101 0 1 chr3 21775270 21776251 -196260907 - HERVK3 LTR ERVK 0 7243 6264 4020 130 21 0 chr3 21776246 21776906 -196260252 - HERVK3 LTR ERVK -1885 5358 4685 * 3592 131 2 7 chr3 21776905 21777471 -196259687 - HERVK3 LTR ERVK -2936 4307 3745 * 9101 114 11 5 chr3 21777459 21778839 -196258319 - HERVK3 LTR ERVK -4498 2745 1358 4541 114 36 15 chr3 21778845 21779575 -196257583 - HERVK3 LTR ERVK -6469 774 30 2174 167 27 15 chr3 21779600 21780007 -196257151 - LTR3 LTR ERVK -16 416 5 509 242 73 0 chr3 21780259 21780424 -196256734 - LTR16C LTR ERVL -2 489 313 561 263 6 29 chr3 21780482 21780653 -196256505 - LTR16C LTR ERVL -289 202 36 4606 218 78 43 chr3 21781432 21785296 -196251862 + L1M4 LINE L1 10 4046 -2598 257 274 123 9 chr3 21785424 21785530 -196251628 + MIR SINE MIR 42 159 -103 219 226 16 32 chr3 21785803 21785865 -196251293 + MIR SINE MIR 181 241 -21 2055 272 58 8 chr3 21786340 21787047 -196250111 - L1ME3A LINE L1 -5 6165 5424 411 195 153 34 chr3 21787139 21787257 -196249901 - MIR SINE MIR -57 205 74 182 281 53 35 chr3 21787391 21787448 -196249710 + MIR SINE MIR 87 144 -64 545 257 131 0 chr3 21787507 21787682 -196249476 - MIR SINE MIR -16 246 49 3128 160 19 14 chr3 21787839 21788427 -196248731 + L1MB7 LINE L1 5592 6182 -2 305 228 0 0 chr3 21788694 21788751 -196248407 - L2 LINE L2 -1 3271 3215 345 260 14 0 chr3 21788854 21788927 -196248231 - L2 LINE L2 -2 3311 3238 * 603 307 97 25 chr3 21788921 21789159 -196247999 + MIR SINE MIR 7 261 -1 702 211 62 37 chr3 21789382 21789543 -196247615 - FRAM SINE Alu 0 166 2 490 243 62 22 chr3 21789768 21789964 -196247194 - MIR SINE MIR -54 208 1 191 277 77 0 chr3 21790051 21790116 -196247042 + MIR SINE MIR 77 146 -62 627 193 28 39 chr3 21790380 21790561 -196246597 + MER53 DNA DNA 2 180 -9 1634 253 111 93 chr3 21791246 21791315 -196245843 - MER45C DNA AcHobo -628 953 887 1932 163 30 0 chr3 21791315 21791616 -196245542 - AluJb SINE Alu -2 310 1 1634 253 111 93 chr3 21791616 21792335 -196244823 - MER45C DNA AcHobo -694 887 182 2120 110 3 0 chr3 21792335 21792617 -196244541 + AluY SINE Alu 1 283 -28 273 98 0 0 chr3 21792617 21792658 -196244500 + (CA)n Simple_repeat Simple_repeat 2 42 0 1741 192 10 0 chr3 21792664 21792956 -196244202 + AluJb SINE Alu 1 295 -17 1634 253 111 93 chr3 21792956 21793047 -196244111 - MER45C DNA AcHobo -1403 178 49 354 334 90 55 chr3 21793082 21793426 -196243732 + L2 LINE L2 2914 3269 -3 185 309 211 25 chr3 21793416 21793733 -196243425 - L2 LINE L2 -339 2975 2600 * 231 257 148 30 chr3 21794515 21794616 -196242542 - L2 LINE L2 -19 3253 3141 257 245 219 26 chr3 21794808 21794959 -196242199 - MER5A DNA MER1_type -6 183 4 394 294 9 0 chr3 21795976 21796085 -196241073 + MER81 DNA DNA 2 111 -3 284 245 113 50 chr3 21796346 21796505 -196240653 + MIR3 SINE MIR 3 171 -37 584 200 73 0 chr3 21796705 21796855 -196240303 - L2 LINE L2 -253 3060 2900 204 158 0 0 chr3 21797249 21797287 -196239871 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 1769 183 14 3 chr3 21797791 21798086 -196239072 + AluJb SINE Alu 3 300 -12 2874 138 21 29 chr3 21798086 21798601 -196238557 + L1MB3 LINE L1 5666 6176 -7 1450 276 98 25 chr3 21798632 21799351 -196237807 + L1ME1 LINE L1 5350 6128 -38 1971 149 41 39 chr3 21799351 21799740 -196237418 + MLT1B LTR MaLR 1 390 0 1450 276 98 25 chr3 21799740 21799778 -196237380 + L1ME1 LINE L1 6128 6162 -4 2232 90 7 3 chr3 21799792 21800081 -196237077 - AluSg SINE Alu -20 290 1 262 283 19 0 chr3 21800392 21800490 -196236668 - MIR SINE MIR -62 146 69 226 373 81 0 chr3 21800969 21801154 -196236004 + L2 LINE L2 3024 3223 -49 275 311 42 8 chr3 21801181 21801300 -196235858 + MIR SINE MIR 23 146 -62 629 261 89 0 chr3 21801558 21801715 -196235443 - MIR SINE MIR -2 260 90 190 256 171 0 chr3 21801711 21801793 -196235365 - L2 LINE L2 -269 3003 2908 * 1704 125 23 4 chr3 21802527 21802710 -196234448 - AluSx SINE Alu 0 316 124 441 0 0 0 chr3 21802710 21802759 -196234399 + (TG)n Simple_repeat Simple_repeat 2 50 0 1704 125 23 4 chr3 21802759 21802864 -196234294 - AluSx SINE Alu -192 124 23 342 297 34 17 chr3 21803471 21803589 -196233569 - MIR SINE MIR -110 152 33 1853 128 62 24 chr3 21804111 21804399 -196232759 + AluSx SINE Alu 1 299 -13 376 271 42 0 chr3 21804562 21804658 -196232500 + MIR SINE MIR 44 143 -119 1871 175 0 13 chr3 21804957 21804973 -196232185 - AluJo SINE Alu -8 304 289 243 0 0 0 chr3 21804973 21805000 -196232158 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1871 175 0 13 chr3 21805000 21805291 -196231867 - AluJo SINE Alu -23 289 1 434 344 45 18 chr3 21805550 21805771 -196231387 - MIR SINE MIR -16 246 20 315 143 95 0 chr3 21806098 21806161 -196230997 - MIR3 SINE MIR -26 182 114 2643 40 0 0 chr3 21806367 21806665 -196230493 + AluY SINE Alu 1 298 -13 214 364 16 8 chr3 21807319 21807440 -196229718 + (CTAGGG)n Simple_repeat Simple_repeat 2 123 0 2121 110 0 21 chr3 21807460 21807781 -196229377 - AluSx SINE Alu 0 315 1 232 266 178 47 chr3 21808589 21808758 -196228400 - MIR3 SINE MIR -11 197 7 488 329 0 0 chr3 21809076 21809213 -196227945 - MIR SINE MIR -89 173 37 185 321 0 0 chr3 21809507 21809563 -196227595 + L3 LINE CR1 1400 1455 -122 216 380 75 29 chr3 21810317 21810664 -196226494 - L2 LINE L2 -337 2977 2615 313 261 123 31 chr3 21810765 21810895 -196226263 - MIR3 SINE MIR -62 146 5 300 314 78 10 chr3 21811224 21811326 -196225832 + L2 LINE L2 3205 3313 0 358 290 73 8 chr3 21811353 21811477 -196225681 + MIR SINE MIR 8 139 -123 1090 268 28 0 chr3 21811530 21811784 -196225374 + MIR SINE MIR 1 261 -1 2238 93 3 6 chr3 21812175 21812486 -196224672 - AluY SINE Alu -1 310 1 444 279 22 7 chr3 21812649 21812785 -196224373 - MIR SINE MIR -111 151 14 327 256 12 0 chr3 21812788 21812870 -196224288 - MER5B DNA MER1_type -7 171 89 256 300 0 0 chr3 21813153 21813223 -196223935 - MIR SINE MIR -58 150 81 511 274 41 7 chr3 21814046 21814192 -196222966 + MIR SINE MIR 52 202 -60 315 321 102 27 chr3 21814516 21814926 -196222232 + L2 LINE L2 2560 3017 -255 822 253 154 7 chr3 21814929 21815214 -196221944 - MLT1G1 LTR MaLR -267 328 2 294 362 21 0 chr3 21816273 21816367 -196220791 - L2 LINE L2 -9 3263 3168 304 275 64 18 chr3 21816405 21816514 -196220644 - L2 LINE L2 -233 3039 2926 649 292 108 20 chr3 21816708 21817335 -196219823 - L2 LINE L2 -171 3142 2462 219 69 0 0 chr3 21817341 21817370 -196219788 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 270 288 45 30 chr3 21817401 21817533 -196219625 - MER117 DNA MER1_type -32 165 32 555 307 92 9 chr3 21818311 21818529 -196218629 + MIR SINE MIR 27 262 0 381 319 77 6 chr3 21818641 21818810 -196218348 + MIR3 SINE MIR 6 186 -22 57 16 0 0 chr3 21818850 21818914 -196218244 + AT_rich Low_complexity Low_complexity 1 64 0 313 270 65 32 chr3 21819020 21819205 -196217953 + L2 LINE L2 2880 3070 -202 226 286 184 27 chr3 21819378 21819525 -196217633 + MIR SINE MIR 39 208 -54 481 300 64 5 chr3 21819624 21819826 -196217332 - MER113 DNA MER1_type? -188 333 116 1261 215 6 93 chr3 21819826 21820147 -196217011 + AluJo SINE Alu 2 294 -8 481 300 64 5 chr3 21820147 21820164 -196216994 - MER113 DNA MER1_type? -405 116 101 502 344 85 31 chr3 21820183 21820407 -196216751 + MIR SINE MIR 7 242 -20 248 172 86 52 chr3 21820718 21820776 -196216382 + MIR SINE MIR 103 162 -100 418 298 16 8 chr3 21821128 21821252 -196215906 + MIR SINE MIR 75 199 -63 370 323 8 8 chr3 21821724 21821848 -196215310 + MIR SINE MIR 21 144 -118 689 332 10 0 chr3 21821994 21822193 -196214965 - MIR SINE MIR -57 205 5 295 330 29 0 chr3 21822184 21822287 -196214871 - MIR SINE MIR -94 168 63 * 206 125 0 25 chr3 21822651 21822691 -196214467 + (TC)n Simple_repeat Simple_repeat 2 40 0 243 133 0 0 chr3 21823540 21823585 -196213573 + (TC)n Simple_repeat Simple_repeat 2 46 0 324 279 31 31 chr3 21823788 21823917 -196213241 - MIR SINE MIR -116 146 18 211 331 121 8 chr3 21824601 21824725 -196212433 - MIR3 SINE MIR -65 143 6 215 373 0 0 chr3 21824730 21824797 -196212361 + L2 LINE L2 3206 3272 0 226 271 17 0 chr3 21824859 21824918 -196212240 - MIR SINE MIR -92 170 111 267 336 0 28 chr3 21825255 21825362 -196211796 + MIR SINE MIR 68 171 -91 360 292 21 14 chr3 21825401 21825545 -196211613 + L1ME3A LINE L1 5794 5938 -232 2178 111 0 0 chr3 21825687 21825985 -196211173 - AluSx SINE Alu -14 298 1 550 211 63 28 chr3 21826143 21826285 -196210873 + MIR SINE MIR 84 230 -32 182 305 76 25 chr3 21826735 21826853 -196210305 + MIR SINE MIR 60 183 -79 213 240 53 13 chr3 21826992 21827067 -196210091 + L2 LINE L2 2985 3062 -210 328 292 94 0 chr3 21827295 21827391 -196209767 + L2 LINE L2 3150 3254 -18 1817 209 95 22 chr3 21827452 21827945 -196209213 + MLT1F LTR MaLR 12 540 -2 185 170 128 0 chr3 21828480 21828527 -196208631 - L2 LINE L2 -6 3266 3214 548 284 56 30 chr3 21828569 21828766 -196208392 + L2 LINE L2 2592 2793 -521 991 228 114 28 chr3 21829001 21829396 -196207762 + L1ME2 LINE L1 5736 6164 0 245 30 0 0 chr3 21829455 21829488 -196207670 + Alu SINE Alu 177 209 -93 248 64 0 21 chr3 21829489 21829536 -196207622 - Alu SINE Alu -1 301 256 1018 176 0 21 chr3 21829636 21829649 -196207509 + AluJo SINE Alu 124 136 -176 2143 115 3 0 chr3 21829649 21829945 -196207213 + AluSx SINE Alu 1 297 -15 1018 176 0 21 chr3 21829945 21830118 -196207040 + AluJo SINE Alu 136 306 -6 312 342 61 18 chr3 21830118 21830232 -196206926 + L1MD3 LINE L1 7658 7776 -219 575 188 0 8 chr3 21830252 21830380 -196206778 + GA-rich Low_complexity Low_complexity 3 129 0 236 300 159 12 chr3 21830416 21830673 -196206485 + L1MC4 LINE L1 7722 8016 -26 296 289 67 10 chr3 21830712 21830816 -196206342 + L2 LINE L2 2767 2876 -438 258 227 0 0 chr3 21830828 21830903 -196206255 + (CA)n Simple_repeat Simple_repeat 2 76 0 381 252 19 9 chr3 21830994 21831101 -196206057 - MLT1L LTR MaLR -341 274 167 209 283 19 0 chr3 21831316 21831369 -196205789 - MIR SINE MIR -62 146 93 193 262 75 47 chr3 21831887 21831994 -196205164 - L3b LINE CR1 -125 1458 1349 2135 125 0 7 chr3 21833435 21833739 -196203419 + AluSx SINE Alu 1 302 -10 410 271 256 0 chr3 21833862 21833995 -196203163 + MIR SINE MIR 31 197 -65 2122 113 3 3 chr3 21834144 21834446 -196202712 - AluSg SINE Alu -8 302 1 264 342 17 17 chr3 21834562 21834679 -196202479 - MIR SINE MIR -79 183 67 395 312 68 30 chr3 21834970 21835233 -196201925 + L2 LINE L2 1853 2125 -1189 248 241 190 0 chr3 21835487 21835566 -196201592 - MIR SINE MIR -7 255 162 379 271 29 24 chr3 21835579 21835749 -196201409 - MLT1H LTR MaLR -1 548 378 435 75 0 0 chr3 21835787 21835840 -196201318 + AluSq SINE Alu 123 175 -138 252 256 207 0 chr3 21835884 21835966 -196201192 - MLT1L LTR MaLR -380 169 71 489 328 74 4 chr3 21836475 21836704 -196200454 + MIR SINE MIR 17 261 -1 463 258 94 103 chr3 21836719 21836893 -196200265 - MER46C DNA MER2_type -3 335 164 790 161 0 29 chr3 21836893 21837030 -196200128 + FLAM_C SINE Alu 1 133 0 463 258 94 103 chr3 21837030 21837184 -196199974 - MER46C DNA MER2_type -174 164 10 2268 108 0 0 chr3 21837200 21837497 -196199661 - AluSx SINE Alu -15 297 1 495 244 106 19 chr3 21837515 21837675 -196199483 + MER5B DNA MER1_type 2 175 -3 263 320 103 26 chr3 21837722 21837916 -196199242 - L2 LINE L2 -212 3060 2852 2167 117 0 0 chr3 21838124 21838424 -196198734 - AluSx SINE Alu -12 300 1 1934 201 66 9 chr3 21838765 21839203 -196197955 + MLT1C LTR MaLR 1 463 -4 621 270 93 17 chr3 21839206 21839495 -196197663 + MER113 DNA MER1_type? 62 372 -149 210 118 0 0 chr3 21839495 21839529 -196197629 + (TTCTCC)n Simple_repeat Simple_repeat 1 34 0 2009 142 3 6 chr3 21839529 21839840 -196197318 - AluSq SINE Alu -2 311 2 1124 126 0 88 chr3 21839893 21839988 -196197170 + L1MA4 LINE L1 6083 6185 -115 2021 118 35 0 chr3 21839988 21840276 -196196882 - AluSx SINE Alu -14 298 1 1124 126 0 88 chr3 21840276 21840419 -196196739 + L1MA4 LINE L1 6185 6300 0 329 301 0 11 chr3 21840511 21840604 -196196554 - MIR SINE MIR -61 147 56 318 320 20 0 chr3 21841173 21841273 -196195885 + MIR SINE MIR 151 252 -10 2139 112 3 0 chr3 21841371 21841696 -196195462 + AluSp SINE Alu 1 313 0 885 279 134 53 chr3 21841764 21842399 -196194759 + MER115 DNA AcHobo 2 687 -6 412 326 28 22 chr3 21842870 21843051 -196194107 - MIR SINE MIR -74 188 7 268 82 20 20 chr3 21843561 21843610 -196193548 + (GAA)n Simple_repeat Simple_repeat 1 49 0 344 172 118 21 chr3 21843626 21843719 -196193439 + MER5B DNA MER1_type 72 173 -5 805 179 87 0 chr3 21843734 21843907 -196193251 - MER5A DNA MER1_type 0 189 2 206 311 0 16 chr3 21843931 21843992 -196193166 + MER5A DNA MER1_type 16 75 -114 753 180 0 0 chr3 21843993 21844115 -196193043 + FLAM_C SINE Alu 6 127 -16 785 98 80 0 chr3 21844118 21844230 -196192928 + 5S rRNA rRNA 1 121 0 2168 111 10 0 chr3 21844236 21844542 -196192616 + AluSg SINE Alu 1 309 -1 1141 143 0 11 chr3 21844552 21844727 -196192431 + AluJb SINE Alu 5 177 -135 652 234 65 56 chr3 21895061 21895275 -196141883 - AluJb SINE Alu 0 312 97 483 253 142 0 chr3 21895484 21895646 -196141512 - MIR SINE MIR -31 231 47 196 325 75 33 chr3 21898491 21898611 -196138547 - L2 LINE L2 -1 3271 3147 607 311 70 25 chr3 21898874 21899118 -196138040 - MIR SINE MIR -1 261 7 181 228 18 35 chr3 21899328 21899385 -196137773 - MIR SINE MIR -71 137 82 183 226 75 0 chr3 21899485 21899538 -196137620 + MIR SINE MIR 94 150 -58 287 347 41 37 chr3 21901335 21901580 -196135578 + L2 LINE L2 2844 3089 -183 595 229 76 0 chr3 21901599 21901756 -196135402 - MIR SINE MIR -11 251 83 192 324 14 14 chr3 21901775 21901849 -196135309 + L2 LINE L2 3240 3313 0 221 258 86 21 chr3 21901897 21901990 -196135168 - MIR SINE MIR -104 158 60 704 179 8 0 chr3 21903317 21903440 -196133718 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 * 1122 153 16 0 chr3 21903439 21903622 -196133536 + Tigger4(Zombi) DNA MER2_type 2543 2728 -3 246 306 6 57 chr3 21905063 21905220 -196131938 + L2 LINE L2 3028 3176 -96 181 182 91 36 chr3 21906616 21906671 -196130487 - MIR SINE MIR -88 174 117 346 323 76 5 chr3 21907602 21907800 -196129358 - MIR SINE MIR -33 229 18 22 0 0 0 chr3 21908319 21908341 -196128817 + AT_rich Low_complexity Low_complexity 1 22 0 850 136 0 0 chr3 21908348 21908473 -196128685 - FLAM_C SINE Alu -18 125 1 369 297 86 17 chr3 21908475 21908650 -196128508 + MLT1K LTR MaLR 84 270 -318 474 212 13 13 chr3 21908691 21908842 -196128316 + GA-rich Low_complexity Low_complexity 2 152 0 780 256 52 34 chr3 21908842 21909111 -196128047 + MLT1K LTR MaLR 277 550 -38 22 0 0 0 chr3 21909451 21909473 -196127685 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr3 21909492 21909519 -196127639 + (T)n Simple_repeat Simple_repeat 1 27 0 2209 238 8 49 chr3 21909540 21910136 -196127022 - L1ME2 LINE L1 -34 6130 5559 420 266 187 5 chr3 21910622 21910825 -196126333 + MIR SINE MIR 21 260 -2 383 235 49 0 chr3 21911217 21911319 -196125839 - MIR SINE MIR -117 145 39 245 197 30 15 chr3 21911614 21911680 -196125478 + (TA)n Simple_repeat Simple_repeat 2 68 0 186 43 0 0 chr3 21911681 21911704 -196125454 + (CA)n Simple_repeat Simple_repeat 2 24 0 387 326 25 36 chr3 21911771 21911940 -196125218 + MIR SINE MIR 7 170 -50 189 289 0 0 chr3 21912192 21912230 -196124928 - L2 LINE L2 -22 3291 3254 194 301 14 14 chr3 21912288 21912361 -196124797 - MIR SINE MIR -170 92 20 191 271 82 0 chr3 21912375 21912460 -196124698 + MIR SINE MIR 59 150 -58 26 50 0 0 chr3 21914226 21914266 -196122892 + GC_rich Low_complexity Low_complexity 1 40 0 198 306 16 0 chr3 21914331 21914393 -196122765 - MIR SINE MIR -61 147 85 417 327 57 9 chr3 21914647 21914858 -196122300 - MIR SINE MIR -10 252 32 265 325 52 45 chr3 21915163 21915317 -196121841 - MIR3 SINE MIR -3 205 51 240 316 206 16 chr3 21915913 21916192 -196120966 + L2 LINE L2 2921 3305 -8 283 218 195 0 chr3 21916414 21916501 -196120657 - L2 LINE L2 -5 3267 3164 4108 100 34 0 chr3 21917470 21918031 -196119127 + LTR19B LTR ERV1 1 580 0 990 258 183 14 chr3 21918068 21918490 -196118668 - L2 LINE L2 0 3313 2821 222 150 183 0 chr3 21918500 21918560 -196118598 - L2 LINE L2 -770 2544 2474 396 257 91 91 chr3 21918641 21918937 -196118221 - HAL1 LINE L1 -2170 337 42 2209 119 0 0 chr3 21922237 21922532 -196114626 + AluSx SINE Alu 1 295 -17 6058 135 50 12 chr3 21923960 21924969 -196112189 - L1MA9 LINE L1 -1 6311 5265 1441 244 78 24 chr3 21925095 21925596 -196111562 - L1ME2 LINE L1 -34 6130 5603 1702 107 137 0 chr3 21925596 21925859 -196111299 + AluSq SINE Alu 3 301 -2 1230 138 0 10 chr3 21925885 21926080 -196111078 + AluSg/x SINE Alu 120 312 0 955 263 100 12 chr3 21926084 21926568 -196110590 - L1ME2 LINE L1 -547 5617 5078 592 237 15 0 chr3 21926585 21926720 -196110438 + L1 LINE L1 3745 3881 -2265 1561 283 29 7 chr3 21926748 21927310 -196109848 - L1ME2 LINE L1 -1098 5048 4475 * 7048 185 29 29 chr3 21927309 21927808 -196109350 + L1PA16 LINE L1 3564 4061 -2105 2728 40 0 0 chr3 21927808 21928109 -196109049 + AluY SINE Alu 1 301 -10 7048 185 29 29 chr3 21928109 21929911 -196107247 + L1PA16 LINE L1 4061 5854 -312 846 272 17 48 chr3 21930031 21930491 -196106667 + L1PA16 LINE L1 5719 6164 -2 201 74 0 0 chr3 21930504 21930531 -196106627 + (A)n Simple_repeat Simple_repeat 1 27 0 265 227 0 80 chr3 21930544 21930632 -196106526 - L1MEd LINE L1 -5943 176 96 21 36 0 0 chr3 21931226 21931254 -196105904 + AT_rich Low_complexity Low_complexity 1 28 0 54 49 0 0 chr3 21931544 21931626 -196105532 + AT_rich Low_complexity Low_complexity 1 82 0 492 254 151 80 chr3 21931635 21932018 -196105140 + L1M4 LINE L1 3625 3979 -2167 2424 78 0 0 chr3 21932018 21932313 -196104845 - AluY SINE Alu -16 295 1 492 254 151 80 chr3 21932313 21933187 -196103971 + L1M4 LINE L1 3979 4971 -1175 23 0 0 0 chr3 21933263 21933286 -196103872 + AT_rich Low_complexity Low_complexity 1 23 0 266 279 62 19 chr3 21933494 21933655 -196103503 - L1ME3A LINE L1 -243 5927 5760 579 163 70 47 chr3 21934587 21934716 -196102442 - FLAM_C SINE Alu 0 133 2 661 136 163 27 chr3 21934719 21934892 -196102266 - L1M3 LINE L1 -685 5495 5303 926 197 6 11 chr3 21934894 21935072 -196102086 - AluJb SINE Alu -5 307 131 277 91 0 0 chr3 21935074 21935118 -196102040 - L1M3 LINE L1 -845 5301 5258 1163 195 35 4 chr3 21935139 21935365 -196101793 - L1MC4 LINE L1 -1096 6946 6714 1399 245 26 9 chr3 21935377 21935720 -196101438 - L1MC4 LINE L1 -1927 5881 5533 732 284 71 18 chr3 21935827 21936304 -196100854 - L1ME3A LINE L1 -487 5675 5175 568 248 86 36 chr3 21936318 21936620 -196100538 - L1MC5 LINE L1 -36 7925 7609 1978 149 7 0 chr3 21936867 21937155 -196100003 + AluJo SINE Alu 2 291 -21 757 191 14 0 chr3 21937272 21937413 -196099745 + AluJb SINE Alu 164 306 -6 892 216 122 79 chr3 21938243 21938696 -196098462 + MLT1F1 LTR MaLR 40 520 -22 311 326 4 28 chr3 21938918 21939208 -196097950 + CT-rich Low_complexity Low_complexity 1 282 0 428 282 105 6 chr3 21939389 21939570 -196097588 - L1M4 LINE L1 -5591 951 753 419 262 19 0 chr3 21939580 21939687 -196097471 - L1M4 LINE L1 -5724 922 814 458 248 137 13 chr3 21939687 21939840 -196097318 + MLT1J2 LTR MaLR 157 328 -122 234 0 0 0 chr3 21940130 21940156 -196097002 + (A)n Simple_repeat Simple_repeat 1 26 0 308 315 72 9 chr3 21940349 21940460 -196096698 - L2 LINE L2 -5 3308 3191 29729 106 16 13 chr3 21940593 21945097 -196092061 + L1P LINE L1 598 5114 -1032 3523 142 48 3 chr3 21947091 21948125 -196089033 - L1PBa LINE L1 -3423 3439 2357 6999 33 0 2 chr3 21948149 21948968 -196088190 - L1PA4 LINE L1 0 6155 5339 * 9905 41 5 9 chr3 21948961 21950692 -196086466 + L1PA4 LINE L1 4205 5923 -232 221 282 90 0 chr3 21954318 21954396 -196082762 + MIR SINE MIR 135 219 -43 208 203 17 17 chr3 21955734 21955793 -196081365 + GA-rich Low_complexity Low_complexity 2 60 0 233 247 130 13 chr3 21960001 21960078 -196077080 - MER58C DNA MER1_type -57 158 73 244 338 90 41 chr3 21960223 21960489 -196076669 - L2 LINE L2 -9 3263 2985 892 214 132 14 chr3 21960809 21961098 -196076060 + MER33 DNA MER1_type 1 323 -1 588 208 79 55 chr3 21961440 21961642 -196075516 + MIR SINE MIR 8 214 -48 292 257 14 0 chr3 21962902 21962976 -196074182 + MIR SINE MIR 50 124 -138 1484 161 57 0 chr3 21962977 21963225 -196073933 + MER47A DNA MER2_type 1 262 -104 629 78 0 69 chr3 21963227 21963329 -196073829 + L1MB3 LINE L1 5836 5930 -253 518 150 10 50 chr3 21963339 21963439 -196073719 + MER47A DNA MER2_type 264 359 -7 950 275 44 39 chr3 21963578 21963938 -196073220 + L1 LINE L1 2418 2779 -3367 269 202 81 0 chr3 21963963 21964062 -196073096 - L1M3d LINE L1 -4790 1775 1669 1570 185 38 19 chr3 21964063 21964377 -196072781 - LTR10B LTR ERV1 0 547 249 16450 262 49 38 chr3 21964434 21969671 -196067487 - HERVI LTR ERV1 -17 7768 2279 184 333 122 0 chr3 21969671 21969761 -196067397 - MER5A DNA MER1_type -16 173 73 16450 262 49 38 chr3 21969761 21971407 -196065751 - HERVI LTR ERV1 -5506 2279 652 2359 226 73 11 chr3 21971437 21971982 -196065176 - HERVI LTR ERV1 -6066 583 5 1614 161 35 21 chr3 21971982 21972268 -196064890 - LTR10B LTR ERV1 0 547 258 767 263 68 40 chr3 21972347 21972846 -196064312 - L1M3d LINE L1 -5277 1265 753 470 269 17 0 chr3 21972856 21972975 -196064183 - L1M3d LINE L1 -5724 922 802 429 303 63 34 chr3 21973278 21973516 -196063642 - L1M3d LINE L1 -6293 249 5 1687 164 17 7 chr3 21973932 21974224 -196062934 + AluJb SINE Alu 1 295 -17 28 48 0 0 chr3 21975684 21975726 -196061432 + AT_rich Low_complexity Low_complexity 1 42 0 1498 163 65 4 chr3 21975869 21976145 -196061013 - AluJb SINE Alu -19 293 1 253 324 7 22 chr3 21977698 21977834 -196059324 - MLT1K LTR MaLR -23 565 432 330 176 98 78 chr3 21977949 21978051 -196059107 - MLT1K LTR MaLR -404 184 81 212 263 79 26 chr3 21978621 21978697 -196058461 + MIR SINE MIR 45 124 -138 757 229 89 51 chr3 21978707 21978894 -196058264 + MIR SINE MIR 13 212 -50 1923 149 7 0 chr3 21978894 21979196 -196057962 + AluSx SINE Alu 1 304 -8 757 229 89 51 chr3 21979196 21979244 -196057914 + MIR SINE MIR 212 257 -5 2257 85 0 10 chr3 21979269 21979576 -196057582 + AluSx SINE Alu 1 304 -8 231 188 62 0 chr3 21981114 21981194 -196055964 + (TTAA)n Simple_repeat Simple_repeat 4 88 0 7912 57 1 0 chr3 21981649 21982614 -196054544 + LTR5 LTR ERVK 1 966 -3 433 355 39 17 chr3 21982981 21983215 -196053943 - MIR SINE MIR -1 261 23 919 153 0 0 chr3 21983251 21983395 -196053763 + AluJb SINE Alu 157 300 -12 2834 219 95 7 chr3 21984704 21985440 -196051718 - L1M4 LINE L1 -1253 4893 4093 271 232 0 14 chr3 21985435 21985504 -196051654 - L1MEc LINE L1 -6307 89 22 * 1003 167 23 11 chr3 21985646 21985820 -196051338 - AluJo SINE Alu -134 178 3 479 230 62 62 chr3 21985823 21985957 -196051201 - L1M4 LINE L1 -1488 4658 4522 2415 97 49 6 chr3 21985957 21986306 -196050852 + THE1B LTR MaLR 1 364 0 479 230 62 62 chr3 21986306 21986349 -196050809 - L1M4 LINE L1 -1623 4523 4481 295 354 20 14 chr3 21986951 21987098 -196050060 - L2 LINE L2 -191 3081 2934 1545 189 29 0 chr3 21987151 21987463 -196049695 + MER33 DNA MER1_type 1 321 -3 1058 149 0 12 chr3 21987568 21987736 -196049422 + FRAM SINE Alu 1 166 0 2097 130 0 0 chr3 21987737 21988044 -196049114 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr3 21988132 21988164 -196048994 + AT_rich Low_complexity Low_complexity 1 32 0 1576 174 0 37 chr3 21988660 21988981 -196048177 - AluJb SINE Alu -3 309 1 203 289 111 72 chr3 21989553 21989761 -196047397 - L2 LINE L2 -33 3239 3024 3336 198 25 14 chr3 21989862 21990502 -196046656 - MER82 DNA MER2_type -6 647 1 1852 151 20 0 chr3 21990845 21991149 -196046009 + AluSx SINE Alu 1 310 -2 240 86 0 0 chr3 21991925 21991960 -196045198 + (TG)n Simple_repeat Simple_repeat 2 36 0 1521 173 14 4 chr3 21992811 21993088 -196044070 - AluJo SINE Alu -32 280 1 381 262 49 8 chr3 21993102 21993224 -196043934 - MIR SINE MIR -5 257 131 3033 91 43 0 chr3 21993224 21993640 -196043518 + MER57B LTR ERV1 1 434 0 4073 141 47 5 chr3 21993640 21994285 -196042873 + MER57B-int LTR ERV1 1 672 -6865 * 6094 171 89 45 chr3 21994282 21996918 -196040240 + MER51-int LTR ERV1 288 4651 -2738 2410 77 0 6 chr3 21996918 21997229 -196039929 + AluSc SINE Alu 1 309 0 6094 171 89 45 chr3 21997229 21997761 -196039397 + MER51-int LTR ERV1 4651 5158 -2231 1459 46 5 36 chr3 21997764 21997958 -196039200 - L1PA4 LINE L1 0 6155 5968 2004 194 90 6 chr3 21998060 21999469 -196037689 - L1PBa LINE L1 -5185 1678 6 751 154 0 0 chr3 21999657 21999767 -196037391 + FRAM SINE Alu 49 158 -18 279 294 52 29 chr3 22000660 22000796 -196036362 + L3 LINE CR1 725 863 -714 346 327 130 57 chr3 22000883 22001305 -196035853 + L3 LINE CR1 1042 1494 -83 1256 219 59 76 chr3 22001327 22001546 -196035612 - L1MC4 LINE L1 0 8042 7821 2086 117 13 17 chr3 22001546 22001846 -196035312 + AluSx SINE Alu 1 299 -13 1256 219 59 76 chr3 22001846 22002115 -196035043 - L1MC4 LINE L1 -221 7821 7562 351 0 0 0 chr3 22002124 22002163 -196034995 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1118 181 0 50 chr3 22002166 22002387 -196034771 - AluJo SINE Alu -31 281 72 453 210 216 6 chr3 22002507 22002669 -196034489 - L1MC4a LINE L1 -490 7318 7123 729 172 0 0 chr3 22002945 22003437 -196033721 + (CAG)n Simple_repeat Simple_repeat 1 492 0 324 161 0 0 chr3 22003450 22003531 -196033627 + (CAG)n Simple_repeat Simple_repeat 2 82 0 411 337 12 0 chr3 22003741 22003913 -196033245 + (CCCCAG)n Simple_repeat Simple_repeat 6 179 0 312 283 157 25 chr3 22004205 22004403 -196032755 - L1ME LINE L1 -381 5789 5566 334 240 32 88 chr3 22004935 22005060 -196032098 - L1ME3A LINE L1 -24 6146 6029 192 306 0 0 chr3 22005452 22005501 -196031657 - L2 LINE L2 -77 3195 3147 502 240 25 0 chr3 22006066 22006187 -196030971 + MIR SINE MIR 8 131 -131 2911 101 43 10 chr3 22006195 22006609 -196030549 - MER57B LTR ERV1 -6 428 1 1005 106 38 1 chr3 22006609 22006837 -196030321 - MER57B-int LTR ERV1 0 7537 7274 630 187 24 8 chr3 22006837 22006960 -196030198 - LTR54B LTR ERV1 -369 129 5 11630 120 58 3 chr3 22006960 22008707 -196028451 - MER57-int LTR ERV1 -387 7150 5307 372 185 0 0 chr3 22008698 22008763 -196028395 - MER57-int LTR ERV1 -1879 4719 4655 * 34935 46 3 0 chr3 22008763 22012968 -196024190 + L1P LINE L1 1 4217 -1929 3493 162 52 12 chr3 22013875 22014073 -196023085 + L1MB3 LINE L1 5444 5633 -550 216 0 0 0 chr3 22014073 22014097 -196023061 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3493 162 52 12 chr3 22014097 22014590 -196022568 + L1MB3 LINE L1 5633 6163 -20 217 141 77 0 chr3 22014591 22014700 -196022458 + (TA)n Simple_repeat Simple_repeat 1 117 0 201 239 26 53 chr3 22015162 22015275 -196021883 + T-rich Low_complexity Low_complexity 5 114 0 855 121 23 75 chr3 22015297 22015347 -196021811 - L1MB4 LINE L1 -1 6179 6128 2561 41 0 3 chr3 22015347 22015642 -196021516 - AluY SINE Alu -17 294 1 855 121 23 75 chr3 22015642 22015765 -196021393 - L1MB4 LINE L1 -52 6128 6015 205 367 28 0 chr3 22017628 22017737 -196019421 + MIR SINE MIR 136 247 -15 1084 162 66 5 chr3 22018727 22018925 -196018233 + L1MD3 LINE L1 7649 7858 -137 7222 205 51 16 chr3 22019210 22021877 -196015281 + L1MB5 LINE L1 3371 6131 -43 1604 103 0 30 chr3 22021983 22022217 -196014941 + AluSg/x SINE Alu 82 308 -2 195 365 0 0 chr3 22022830 22022893 -196014265 + MIR SINE MIR 171 233 -29 341 288 73 89 chr3 22023190 22023492 -196013666 + L2 LINE L2 2967 3263 -9 198 333 25 0 chr3 22023877 22023958 -196013200 + L2 LINE L2 2128 2210 -1104 411 224 19 28 chr3 22024004 22024111 -196013047 + L1MC5 LINE L1 7705 7810 -151 423 280 126 16 chr3 22025067 22025249 -196011909 - MIR SINE MIR -14 248 47 204 214 0 0 chr3 22025658 22025700 -196011458 + L2 LINE L2 3019 3060 -212 193 245 19 0 chr3 22026049 22026102 -196011056 + MIR SINE MIR 59 112 -150 230 257 14 14 chr3 22026671 22026741 -196010417 - MIR SINE MIR -19 243 174 488 234 35 35 chr3 22027125 22027266 -196009892 + L1MC4 LINE L1 6726 6866 -1176 689 242 130 71 chr3 22027393 22027928 -196009230 + L1MC4 LINE L1 7347 8042 0 349 237 13 112 chr3 22028103 22028255 -196008903 - MIR3 SINE MIR -69 139 3 1773 117 86 0 chr3 22029621 22029878 -196007280 + AluSx SINE Alu 1 279 -33 232 67 0 44 chr3 22029881 22029926 -196007232 + (CGGGA)n Simple_repeat Simple_repeat 3 45 0 191 301 34 55 chr3 22030473 22030619 -196006539 - L2 LINE L2 -306 2966 2824 383 246 66 25 chr3 22030649 22030771 -196006387 + MIR SINE MIR 16 142 -66 23 78 0 0 chr3 22031796 22031847 -196005311 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr3 22032008 22032033 -196005125 + AT_rich Low_complexity Low_complexity 1 25 0 258 304 0 0 chr3 22032674 22032753 -196004405 + L1ME4a LINE L1 5735 5813 -308 373 240 10 20 chr3 22032827 22032927 -196004231 + L1ME4a LINE L1 5959 6057 -64 513 227 93 138 chr3 22033089 22033661 -196003497 + L2 LINE L2 2737 3313 0 191 308 181 8 chr3 22034096 22034229 -196002929 - MIR SINE MIR -54 208 53 180 233 0 0 chr3 22034603 22034646 -196002512 + L2 LINE L2 3271 3313 0 1995 111 59 0 chr3 22034878 22035167 -196001991 + AluSx SINE Alu 1 306 -6 1077 188 8 2 chr3 22035178 22035443 -196001715 - MER2 DNA MER2_type 0 345 32 1115 317 149 5 chr3 22035454 22036174 -196000984 - L2 LINE L2 -228 3044 2225 327 215 94 68 chr3 22037273 22037464 -195999694 - L2 LINE L2 0 3313 3118 501 232 205 24 chr3 22037563 22037817 -195999341 + L2 LINE L2 3014 3313 0 186 250 184 13 chr3 22037947 22038023 -195999135 + L2 LINE L2 3116 3204 -68 2302 110 7 0 chr3 22038339 22038647 -195998511 - AluSx SINE Alu -2 310 1 401 285 106 24 chr3 22038666 22038873 -195998285 - MIR SINE MIR -16 246 23 1145 120 0 63 chr3 22038887 22039078 -195998080 - AluJb SINE Alu 0 312 134 788 160 53 0 chr3 22039385 22039554 -195997604 - MIR SINE MIR -5 257 80 848 129 0 38 chr3 22040132 22040264 -195996894 + FLAM_C SINE Alu 1 127 -16 754 259 89 17 chr3 22040719 22040955 -195996203 - MIR SINE MIR 0 262 10 362 304 74 28 chr3 22042201 22042418 -195994740 + MIR SINE MIR 2 228 -34 2474 175 103 34 chr3 22042436 22042530 -195994628 - Charlie1 DNA MER1_type -70 2691 2605 2781 0 0 10 chr3 22042530 22042828 -195994330 + AluYa5 SINE Alu 1 295 -16 2169 129 0 3 chr3 22042831 22043126 -195994032 + AluSq SINE Alu 1 294 -19 2052 124 0 3 chr3 22043126 22043439 -195993719 + AluSx SINE Alu 1 312 0 2474 175 103 34 chr3 22043439 22043977 -195993181 - Charlie1 DNA MER1_type -156 2605 2009 1769 116 101 0 chr3 22043977 22044244 -195992914 - AluSg SINE Alu -16 294 1 632 276 36 14 chr3 22044299 22044520 -195992638 + MIR SINE MIR 9 234 -28 26 64 0 0 chr3 22044645 22044692 -195992466 + AT_rich Low_complexity Low_complexity 1 47 0 427 205 94 82 chr3 22044809 22044980 -195992178 + MER104 DNA Tc2 8 180 0 754 207 72 16 chr3 22046152 22046345 -195990813 + MER3 DNA MER1_type 2 205 -4 438 268 33 13 chr3 22046709 22046876 -195990282 - L1MC4a LINE L1 -1969 5839 5670 6701 70 17 17 chr3 22046866 22047783 -195989375 - L1PA7 LINE L1 -1 6153 5231 1043 233 107 13 chr3 22048113 22048413 -195988745 - MLT1J2 LTR MaLR -122 328 1 21 0 0 0 chr3 22048473 22048494 -195988664 + AT_rich Low_complexity Low_complexity 1 21 0 2310 75 3 16 chr3 22048970 22049276 -195987882 - AluY SINE Alu -9 302 1 323 132 26 68 chr3 22049673 22049767 -195987391 - MER53 DNA DNA -73 116 1 467 249 46 69 chr3 22050506 22050667 -195986491 - MLT1J2 LTR MaLR -40 471 252 608 271 48 5 chr3 22050692 22050880 -195986278 - MLT1J1 LTR MaLR -250 196 1 212 313 0 16 chr3 22051507 22051571 -195985587 - L2 LINE L2 -5 3267 3205 2176 107 7 0 chr3 22051597 22051895 -195985263 + AluSx SINE Alu 1 300 -12 732 179 0 0 chr3 22053874 22053986 -195983172 + FLAM_A SINE Alu 4 115 -18 701 286 112 9 chr3 22054248 22054472 -195982686 - MLT1K LTR MaLR -318 270 24 203 308 62 0 chr3 22054859 22054924 -195982234 + L2 LINE L2 3241 3309 -4 292 336 70 33 chr3 22055837 22056108 -195981050 - L2 LINE L2 -171 3142 2862 243 324 57 29 chr3 22056141 22056246 -195980912 - MIR3 SINE MIR -54 154 47 241 280 72 40 chr3 22056491 22056616 -195980542 + MIR SINE MIR 24 152 -56 440 297 82 18 chr3 22057148 22057367 -195979791 + MIR SINE MIR 20 252 -10 1967 81 0 75 chr3 22058445 22058658 -195978500 - AluSq SINE Alu 0 326 144 2230 78 0 41 chr3 22058658 22058978 -195978180 - AluSg SINE Alu -2 308 2 1967 81 0 75 chr3 22058978 22059112 -195978046 - AluSq SINE Alu -182 144 2 580 111 40 10 chr3 22059494 22059593 -195977565 - L1MB2 LINE L1 -2 6169 6068 632 283 148 0 chr3 22059895 22060125 -195977033 + L2 LINE L2 2712 2975 -339 306 326 32 0 chr3 22060120 22060215 -195976943 + MER5B DNA MER1_type 7 104 -74 * 689 231 17 52 chr3 22060364 22060537 -195976621 - AluJo SINE Alu -144 168 2 2201 101 3 0 chr3 22060547 22060843 -195976315 - AluSx SINE Alu -15 297 1 1207 41 0 0 chr3 22061269 22061414 -195975744 - L1PA4 LINE L1 -1 6154 6010 445 83 67 0 chr3 22061480 22061557 -195975601 + L1M4 LINE L1 5252 5337 -822 1771 155 7 0 chr3 22061557 22061841 -195975317 + AluSx SINE Alu 1 286 -26 894 122 157 35 chr3 22111892 22112064 -195925094 - PRIMA41-int LTR ERV1 -6201 1555 1363 * 1942 88 42 67 chr3 22112056 22112386 -195924772 - PRIMA41-int LTR ERV1 -6826 930 609 857 145 23 0 chr3 22112386 22112517 -195924641 + AluSq/x SINE Alu 2 135 -178 2087 147 0 3 chr3 22112518 22112831 -195924327 + AluSx SINE Alu 1 312 0 874 128 13 0 chr3 22112843 22112999 -195924159 + L1MCa LINE L1 1204 1361 -5065 15758 82 11 2 chr3 22113131 22115529 -195921629 - L1P4 LINE L1 -509 6381 3956 3858 168 40 4 chr3 22115677 22116417 -195920741 - L1P4 LINE L1 -4302 2561 1795 1991 117 37 27 chr3 22116417 22116715 -195920443 + AluSp SINE Alu 1 301 -12 2128 108 3 3 chr3 22116721 22117028 -195920130 + L1P3 LINE L1 5 311 -6150 1882 97 4 8 chr3 22117157 22117425 -195919733 - L1P LINE L1 -4328 1818 1552 6485 77 24 17 chr3 22117426 22118403 -195918755 - L1PA4 LINE L1 -2 6153 5175 7799 123 35 25 chr3 22118506 22119841 -195917317 - L1PBa LINE L1 -4121 2742 1395 1702 241 120 40 chr3 22119838 22120440 -195916718 - L1PBa LINE L1 -5806 1057 408 * 5832 105 46 5 chr3 22120571 22121479 -195915679 + L1MA2 LINE L1 5204 6148 -156 2215 117 7 0 chr3 22121479 22121779 -195915379 + AluSq SINE Alu 1 302 -11 2015 119 39 3 chr3 22121779 22122063 -195915095 + AluSx SINE Alu 1 295 -17 358 331 15 45 chr3 22122064 22122310 -195914848 - MIR3 SINE MIR -22 240 2 326 104 10 188 chr3 22122730 22122826 -195914332 + L1PB3 LINE L1 6074 6152 -2 332 318 53 8 chr3 22122855 22122987 -195914171 - MER91C DNA MER1_type 0 140 3 374 296 118 13 chr3 22123015 22123167 -195913991 + MIR3 SINE MIR 33 200 -8 500 351 25 4 chr3 22123173 22123415 -195913743 + L3 LINE CR1 1244 1490 -87 26 0 0 0 chr3 22124236 22124262 -195912896 + AT_rich Low_complexity Low_complexity 1 26 0 796 204 69 33 chr3 22124622 22124897 -195912261 - L1M4 LINE L1 -2911 3951 3667 5365 128 15 7 chr3 22124898 22126362 -195910796 - L1PA16 LINE L1 -4 6162 4651 1408 173 37 9 chr3 22126362 22126681 -195910477 + MSTA LTR MaLR 1 426 -2 3138 193 45 19 chr3 22126683 22127378 -195909780 - L1 LINE L1 -1491 4655 3943 5903 130 19 1 chr3 22127378 22128268 -195908890 - HSMAR2 DNA Mariner -396 906 1 279 200 24 12 chr3 22128633 22128718 -195908440 + (TATG)n Simple_repeat Simple_repeat 3 88 0 1887 192 31 17 chr3 22128718 22129078 -195908080 - MLT1A1 LTR MaLR 0 365 1 25 31 0 0 chr3 22129165 22129197 -195907961 + AT_rich Low_complexity Low_complexity 1 32 0 11746 179 23 21 chr3 22129483 22130587 -195906571 - L1PB1 LINE L1 -2 6149 5049 2264 118 0 0 chr3 22130587 22130883 -195906275 - AluSx SINE Alu -16 296 1 11746 179 23 21 chr3 22130883 22133289 -195903869 - L1PB1 LINE L1 -1102 5049 2632 14596 144 118 11 chr3 22133420 22136708 -195900450 - L1PBa LINE L1 -3219 3643 3 324 326 79 18 chr3 22137160 22137387 -195899771 + MIR SINE MIR 14 254 -8 1618 191 36 28 chr3 22138136 22138524 -195898634 - pTR5 LTR ERV1 -1309 1129 739 1474 183 154 34 chr3 22138674 22139162 -195897996 + LTR61 LTR ERV1 16 595 0 623 182 4 37 chr3 22139227 22139371 -195897787 + L1M2 LINE L1 2804 2944 -3906 831 177 27 14 chr3 22139371 22139552 -195897606 - FRAM SINE Alu 0 180 1 604 200 164 0 chr3 22139552 22139717 -195897441 + L1M2 LINE L1 2938 3129 -3719 8115 192 50 15 chr3 22139860 22142125 -195895033 + L1PA12 LINE L1 1543 3897 -3687 687 111 0 10 chr3 22142125 22142224 -195894934 + MER4A LTR ERV1 1 98 -566 1908 109 8 77 chr3 22142224 22142597 -195894561 + MER4A LTR ERV1 261 664 0 2078 113 61 72 chr3 22142600 22143103 -195894055 + MER4A-int LTR ERV1 1 563 -6035 1235 234 76 12 chr3 22143298 22143640 -195893518 + LTR49-int LTR ERV1 1861 2224 -4107 3902 119 35 12 chr3 22143654 22144548 -195892610 + LTR49-int LTR ERV1 199 1168 -5590 4087 80 67 7 chr3 22144564 22145255 -195891903 + LTR49-int LTR ERV1 1764 2495 -4103 1060 181 95 0 chr3 22145255 22145487 -195891671 - LTR8 LTR ERV1 -434 257 4 2810 158 19 45 chr3 22145488 22146153 -195891005 + pTR5 LTR ERV1 743 1390 -1048 5301 235 7 36 chr3 22146153 22148003 -195889155 - Harlequin LTR ERV1 -1266 6004 4062 4554 81 32 0 chr3 22147981 22148698 -195888460 - Harlequin LTR ERV1 -4324 2572 1833 * 358 193 169 0 chr3 22148712 22148795 -195888363 + LTR8 LTR ERV1 156 252 -439 327 130 0 0 chr3 22148798 22148852 -195888306 - Harlequin LTR ERV1 -5176 1720 1667 331 97 21 86 chr3 22148852 22148945 -195888213 - L1PA8 LINE L1 0 6172 6086 4263 153 44 10 chr3 22149156 22150311 -195886847 - L1PB3 LINE L1 -135 6019 4834 7510 32 0 0 chr3 22150312 22151322 -195885836 - L1PA5 LINE L1 -3 6151 5138 7223 25 0 0 chr3 22151322 22152217 -195884941 + L1PA5 LINE L1 4267 5161 -985 1092 66 13 0 chr3 22152217 22152368 -195884790 - LTR10A-int LTR ERV1 -2850 2736 2584 * 7122 197 22 17 chr3 22152364 22155047 -195882111 - LTR10A-int LTR ERV1 -3034 4112 1399 730 196 31 32 chr3 22155053 22155306 -195881852 - LTR10A-int LTR ERV1 -5842 807 506 * 1443 200 32 6 chr3 22155299 22155614 -195881544 - LTR10A-int LTR ERV1 -6324 325 3 2959 114 41 63 chr3 22155627 22156186 -195880972 - LTR10A LTR ERV1 -62 547 1 5816 157 56 9 chr3 22156186 22157722 -195879436 - L1PBb LINE L1 -3424 2779 1096 2473 67 7 0 chr3 22157722 22158019 -195879139 + AluY SINE Alu 1 299 -12 5816 157 56 9 chr3 22158019 22158759 -195878399 - L1PBb LINE L1 -5107 1096 393 927 204 39 27 chr3 22159920 22160180 -195876978 - L1MB7 LINE L1 -20 6164 5902 25 75 0 0 chr3 22160184 22160237 -195876921 + AT_rich Low_complexity Low_complexity 1 53 0 255 252 104 50 chr3 22160245 22160304 -195876854 - L1ME4a LINE L1 -158 5963 5905 1508 238 78 9 chr3 22160304 22160830 -195876328 - L1MB7 LINE L1 -290 5894 5333 951 106 0 0 chr3 22160838 22160970 -195876188 - L1PA15 LINE L1 -5 6160 6029 245 32 0 0 chr3 22160982 22161038 -195876120 - AluY SINE Alu 0 304 249 1368 77 22 11 chr3 22161038 22161219 -195875939 - AluY SINE Alu -128 183 1 1238 121 24 5 chr3 22161219 22161425 -195875733 - L1PA15 LINE L1 -126 6039 5830 664 170 18 53 chr3 22161435 22161474 -195875684 - L1MB7 LINE L1 -830 5316 5277 2349 60 0 0 chr3 22161474 22161781 -195875377 - AluY SINE Alu 0 307 1 664 170 18 53 chr3 22161781 22161910 -195875248 - L1MB7 LINE L1 -869 5277 5152 5405 212 43 55 chr3 22162129 22163087 -195874071 - L1MB7 LINE L1 -982 5164 4196 1081 167 18 0 chr3 22163087 22163255 -195873903 - FAM SINE Alu -4 171 1 5405 212 43 55 chr3 22163255 22163541 -195873617 - L1MB7 LINE L1 -1950 4196 3908 1946 109 32 7 chr3 22163541 22163824 -195873334 - AluSg SINE Alu -18 292 3 2165 124 0 0 chr3 22163826 22164116 -195873042 - AluSq SINE Alu -23 290 1 5405 212 43 55 chr3 22164116 22164561 -195872597 - L1MB7 LINE L1 -2239 3907 3496 495 0 0 0 chr3 22164561 22164616 -195872542 + (TG)n Simple_repeat Simple_repeat 2 56 0 5405 212 43 55 chr3 22164616 22164916 -195872242 - L1MB7 LINE L1 -2650 3496 3194 26 0 0 0 chr3 22165139 22165165 -195871993 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr3 22165165 22165189 -195871969 + (G)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 22165270 22165292 -195871866 + GC_rich Low_complexity Low_complexity 1 22 0 187 167 0 0 chr3 22165322 22165352 -195871806 + C-rich Low_complexity Low_complexity 1 30 0 35 0 0 0 chr3 22165403 22165438 -195871720 + GC_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr3 22165478 22165512 -195871646 + AT_rich Low_complexity Low_complexity 1 34 0 242 279 0 16 chr3 22165693 22165754 -195871404 + MIR SINE MIR 19 78 -130 191 242 45 61 chr3 22166113 22166179 -195870979 + L3 LINE CR1 1494 1558 -19 465 133 0 0 chr3 22166191 22166274 -195870884 + L1MB7 LINE L1 6089 6171 -13 12950 167 25 10 chr3 22166673 22170329 -195866829 - L1PA14 LINE L1 -1 6160 2458 781 145 14 14 chr3 22170329 22170467 -195866691 - MER4B LTR ERV1 -18 592 455 12254 110 55 11 chr3 22170624 22172738 -195864420 - MER4-int LTR ERV1 -555 6043 3837 3737 135 95 24 chr3 22172739 22173627 -195863531 - MER4-int LTR ERV1 -2919 3679 2729 5460 108 105 126 chr3 22173628 22175033 -195862125 - pTR5 LTR ERV1 0 2438 1063 3128 123 31 68 chr3 22175225 22175480 -195861678 + MER41C LTR ERV1 1 264 -290 2289 65 0 0 chr3 22175480 22175756 -195861402 + AluY SINE Alu 17 292 -19 3128 123 31 68 chr3 22175756 22176075 -195861083 + MER41C LTR ERV1 264 554 0 2398 74 38 69 chr3 22176095 22176183 -195860975 + PRIMA41-int LTR ERV1 525 614 -7142 1986 132 27 0 chr3 22176183 22176478 -195860680 - AluSq SINE Alu -9 304 2 2398 74 38 69 chr3 22176478 22176808 -195860350 + PRIMA41-int LTR ERV1 614 930 -6826 * 27132 120 22 12 chr3 22176800 22181111 -195856047 + PRIMA41-int LTR ERV1 1363 5720 -2036 2666 241 78 9 chr3 22181111 22182037 -195855121 + L1PB1 LINE L1 22 1011 -5852 13945 192 17 13 chr3 22182069 22187214 -195849944 + L1PB1 LINE L1 1297 6507 -360 279 190 0 0 chr3 22187219 22187277 -195849881 + (TA)n Simple_repeat Simple_repeat 1 58 0 269 226 28 66 chr3 22187327 22187508 -195849650 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 2248 118 22 11 chr3 22187518 22187882 -195849276 + L1PB1 LINE L1 6498 6865 -2 12326 116 23 31 chr3 22187885 22189479 -195847679 + MER41C-int LTR ERV1 5709 7285 -471 2484 70 0 0 chr3 22189479 22189779 -195847379 + AluY SINE Alu 1 300 -11 12326 116 23 31 chr3 22189779 22190248 -195846910 + MER41C-int LTR ERV1 7285 7756 0 2150 122 58 0 chr3 22190248 22190576 -195846582 + MER41C LTR ERV1 1 347 -207 222 154 46 15 chr3 22190567 22190632 -195846526 + (TA)n Simple_repeat Simple_repeat 2 68 0 * 279 0 0 0 chr3 22190644 22190675 -195846483 + (CA)n Simple_repeat Simple_repeat 2 32 0 1248 134 20 10 chr3 22190675 22190876 -195846282 + MER41C LTR ERV1 352 554 0 2183 109 0 0 chr3 22190889 22191173 -195845985 - AluSx SINE Alu -17 295 12 2190 121 0 10 chr3 22191307 22191612 -195845546 + AluSg SINE Alu 1 302 -8 2071 97 0 0 chr3 22191734 22191993 -195845165 + AluSx SINE Alu 37 295 -17 318 314 47 24 chr3 22192072 22192221 -195844937 - MIR SINE MIR -67 141 19 2313 108 0 0 chr3 22192791 22193087 -195844071 - AluSq SINE Alu -17 296 1 219 69 0 0 chr3 22193811 22193840 -195843318 + (TCC)n Simple_repeat Simple_repeat 1 29 0 241 26 53 0 chr3 22193892 22193930 -195843228 + (TCC)n Simple_repeat Simple_repeat 3 42 0 219 69 0 0 chr3 22193979 22194008 -195843150 + (TCC)n Simple_repeat Simple_repeat 1 29 0 254 29 29 0 chr3 22194058 22194093 -195843065 + (TCC)n Simple_repeat Simple_repeat 3 38 0 225 65 0 0 chr3 22194143 22194174 -195842984 + (TCC)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr3 22196861 22196882 -195840276 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 202 156 328 0 chr3 22197242 22197306 -195839852 + MER5A DNA MER1_type 71 155 -34 269 97 16 81 chr3 22197330 22197392 -195839766 - L2 LINE L2 -253 3060 3003 183 238 7 35 chr3 22197959 22198102 -195839056 + (TGG)n Simple_repeat Simple_repeat 1 139 0 306 337 6 0 chr3 22198300 22198463 -195838695 + (TGG)n Simple_repeat Simple_repeat 2 165 0 334 248 40 10 chr3 22199141 22199242 -195837916 - MIR SINE MIR -66 196 93 5270 69 19 1 chr3 22200475 22201160 -195835998 - L1PA7 LINE L1 -1 6153 5457 503 272 27 16 chr3 22201336 22201520 -195835638 - L1M4 LINE L1 -2549 3597 3412 648 163 0 102 chr3 22203451 22203598 -195833560 - AluJb SINE Alu -16 296 165 212 307 61 35 chr3 22203640 22203754 -195833404 + MIR SINE MIR 23 139 -123 2606 117 3 8 chr3 22203786 22204163 -195832995 - THE1C LTR MaLR 0 375 1 10772 114 9 27 chr3 22204163 22205773 -195831385 - THE1C-int LTR MaLR 0 1580 1 2635 101 5 11 chr3 22205773 22206150 -195831008 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr3 22206233 22206256 -195830902 + AT_rich Low_complexity Low_complexity 1 23 0 2286 123 0 0 chr3 22206887 22207196 -195829962 - AluSx SINE Alu -1 311 3 276 259 49 34 chr3 22207199 22207404 -195829754 - L1M4 LINE L1 -842 5304 5097 1612 118 36 3 chr3 22207407 22207711 -195829447 + MER1A DNA MER1_type 1 363 -109 2229 161 39 31 chr3 22207711 22208255 -195828903 - MLT2A2 LTR ERVL 0 554 1 800 105 21 49 chr3 22208259 22208402 -195828756 + MER1A DNA MER1_type 395 533 0 1673 282 34 2 chr3 22208405 22208991 -195828167 - L1M4 LINE L1 -1052 5094 4490 8023 198 15 12 chr3 22209005 22210716 -195826442 + L1 LINE L1 3564 5279 -867 22 0 0 0 chr3 22210716 22210738 -195826420 + AT_rich Low_complexity Low_complexity 1 22 0 21192 41 1 1 chr3 22210739 22214083 -195823075 - L1PA4 LINE L1 -4 6151 2809 8856 189 21 40 chr3 22214083 22214115 -195823043 - L1 LINE L1 -1328 4818 4787 2144 139 3 0 chr3 22214115 22214424 -195822734 - AluSp SINE Alu -3 310 1 8856 189 21 40 chr3 22214424 22216517 -195820641 - L1 LINE L1 -1359 4787 2732 3177 122 63 17 chr3 22216532 22217055 -195820103 - LTR10A LTR ERV1 -62 547 1 6649 224 21 25 chr3 22217057 22218562 -195818596 - LTR10A-int LTR ERV1 -1 6648 5150 31 58 0 0 chr3 22218679 22218731 -195818427 + GC_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr3 22218823 22218866 -195818292 + GC_rich Low_complexity Low_complexity 1 43 0 2862 132 13 13 chr3 22219007 22219633 -195817525 + L1PA16 LINE L1 5436 6162 -4 3468 198 43 28 chr3 22219778 22220512 -195816646 - L1MB8 LINE L1 -81 6097 5331 2038 179 20 3 chr3 22220512 22220864 -195816294 + MLT1A1 LTR MaLR 4 361 -4 3468 198 43 28 chr3 22220864 22221325 -195815833 - L1MB8 LINE L1 -847 5331 4878 14150 189 27 22 chr3 22221458 22222077 -195815081 - L1PB2 LINE L1 0 6867 6252 2434 93 0 0 chr3 22222077 22222379 -195814779 + AluSc SINE Alu 1 302 -7 14150 189 27 22 chr3 22222379 22224600 -195812558 - L1PB2 LINE L1 -615 6252 4042 2330 118 0 6 chr3 22224600 22224914 -195812244 - AluSx SINE Alu 0 312 1 14150 189 27 22 chr3 22224914 22227456 -195809702 - L1PB2 LINE L1 -2825 4042 1395 3702 177 66 123 chr3 22227453 22228570 -195808588 - L1PB2 LINE L1 -5806 1057 4 * 2071 192 34 38 chr3 22228564 22228818 -195808340 - L1MB8 LINE L1 -2344 3802 3549 * 1456 30 0 0 chr3 22228818 22228984 -195808174 + AluY SINE Alu 146 311 0 2071 192 34 38 chr3 22228984 22229260 -195807898 - L1MB8 LINE L1 -2597 3549 3274 747 146 30 73 chr3 22229245 22229409 -195807749 + L1MA3 LINE L1 6148 6304 -1 * 7437 153 10 3 chr3 22229567 22231575 -195805583 - L1PA11 LINE L1 -11 6163 4123 4674 255 41 43 chr3 22231598 22233237 -195803921 - L1PA12 LINE L1 -4861 2723 2 589 221 43 0 chr3 22233493 22233633 -195803525 + MER104 DNA Tc2 35 180 0 1745 218 58 25 chr3 22234488 22234937 -195802221 + MLT1C LTR MaLR 1 464 -3 2743 262 59 23 chr3 22235893 22236654 -195800504 + L1M4 LINE L1 2 801 -5741 351 0 0 0 chr3 22236654 22236693 -195800465 + (CA)n Simple_repeat Simple_repeat 2 40 0 2743 262 59 23 chr3 22236693 22236831 -195800327 + L1M4 LINE L1 801 933 -5609 940 312 89 46 chr3 22236907 22237447 -195799711 + L2 LINE L2 1783 2367 -947 239 0 32 0 chr3 22237447 22237478 -195799680 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 940 312 89 46 chr3 22237478 22237699 -195799459 + L2 LINE L2 2367 2577 -737 438 241 132 17 chr3 22237737 22237911 -195799247 + MLT1J2 LTR MaLR 1 194 -256 472 176 98 59 chr3 22237947 22238100 -195799058 + MLT1J2 LTR MaLR 290 448 -2 588 300 47 6 chr3 22238981 22239151 -195798007 + MER91A DNA MER1_type 20 196 0 316 218 65 6 chr3 22239176 22239287 -195797871 - MIR SINE MIR -46 216 100 338 169 157 12 chr3 22240517 22240600 -195796558 + L2 LINE L2 3183 3277 -36 209 300 57 0 chr3 22240692 22240762 -195796396 - MIR SINE MIR -83 179 106 292 246 29 10 chr3 22241361 22241572 -195795586 + (CCGCT)n Simple_repeat Simple_repeat 1 215 0 236 265 60 17 chr3 22242473 22242590 -195794568 - LTR67 LTR ERVL -5 552 431 333 260 52 0 chr3 22242762 22242839 -195794319 - L2 LINE L2 -249 3023 2943 296 219 16 0 chr3 22242839 22242903 -195794255 - MLT1E1 LTR MaLR -589 65 1 337 249 72 55 chr3 22242999 22243180 -195793978 - HAL1b LINE L1 -1 1347 1164 250 284 12 0 chr3 22243180 22243261 -195793897 + GA-rich Low_complexity Low_complexity 1 82 0 630 272 64 79 chr3 22243262 22243598 -195793560 - HAL1b LINE L1 -195 1153 813 2067 113 7 24 chr3 22243598 22243920 -195793238 - AluSx SINE Alu 0 318 2 630 272 64 79 chr3 22243920 22244073 -195793085 - HAL1b LINE L1 -535 813 668 2183 123 3 3 chr3 22244073 22244375 -195792783 - AluSx SINE Alu -6 306 5 630 272 64 79 chr3 22244375 22244412 -195792746 - HAL1b LINE L1 -680 668 632 250 189 84 84 chr3 22244858 22244953 -195792205 - MLT1J LTR MaLR -51 460 366 346 228 25 0 chr3 22245039 22245118 -195792040 - MLT1J LTR MaLR -332 179 99 581 291 57 22 chr3 22245313 22245540 -195791618 - MIR SINE MIR -25 237 3 294 308 164 0 chr3 22245540 22245644 -195791514 - MER5B DNA MER1_type -1 177 57 * 397 296 34 29 chr3 22245624 22245804 -195791354 - MIR SINE MIR -38 224 45 207 206 69 138 chr3 22246882 22247042 -195790116 - MER5A DNA MER1_type -6 183 35 477 0 0 0 chr3 22247058 22247111 -195790047 + (CA)n Simple_repeat Simple_repeat 2 54 0 182 313 37 92 chr3 22247912 22248075 -195789083 - L3 LINE CR1 -429 1148 995 263 245 129 29 chr3 22248075 22248214 -195788944 + L3 LINE CR1 1351 1503 -74 204 330 78 29 chr3 22248224 22248327 -195788831 - MER5B DNA MER1_type -70 108 1 615 280 78 14 chr3 22248409 22248627 -195788531 - MIR SINE MIR -3 259 28 253 259 42 91 chr3 22248581 22248724 -195788434 + MIR3 SINE MIR 8 143 -65 * 256 300 39 62 chr3 22249060 22249190 -195787968 + MIR SINE MIR 20 146 -62 512 334 80 40 chr3 22249223 22249573 -195787585 - L2 LINE L2 0 3313 2950 194 138 0 0 chr3 22249593 22249622 -195787536 + L2 LINE L2 3225 3253 -19 2480 57 10 7 chr3 22250493 22250792 -195786366 + AluY SINE Alu 2 301 -10 791 214 44 6 chr3 22251048 22251230 -195785928 - MIR SINE MIR -22 240 52 321 333 0 28 chr3 22251639 22251747 -195785411 - MIR SINE MIR -138 124 20 220 300 88 0 chr3 22251777 22251857 -195785301 - L2 LINE L2 -44 3269 3183 351 234 11 43 chr3 22251973 22252067 -195785091 + L2 LINE L2 3223 3313 0 302 300 40 20 chr3 22252103 22252203 -195784955 - L2 LINE L2 -216 3056 2955 419 78 16 0 chr3 22252271 22252335 -195784823 + (CA)n Simple_repeat Simple_repeat 2 66 0 225 225 155 0 chr3 22252345 22252416 -195784742 + MER112 DNA MER1_type 125 206 -54 185 301 198 58 chr3 22252536 22253178 -195783980 + L2 LINE L2 2004 2735 -579 278 314 33 25 chr3 22253308 22253429 -195783729 + L2 LINE L2 2985 3106 -166 614 221 33 107 chr3 22253528 22253772 -195783386 + MIR SINE MIR 16 241 -21 192 77 0 0 chr3 22253884 22253910 -195783248 + (TCC)n Simple_repeat Simple_repeat 2 27 0 561 282 146 56 chr3 22254160 22254403 -195782755 + L2 LINE L2 2340 2560 -753 1594 261 97 20 chr3 22254403 22254950 -195782208 - MLT1G LTR MaLR 0 590 2 561 282 146 56 chr3 22254950 22255573 -195781585 + L2 LINE L2 2560 3299 -14 234 0 0 0 chr3 22255588 22255614 -195781544 + (TG)n Simple_repeat Simple_repeat 2 27 0 348 250 12 0 chr3 22255696 22255776 -195781382 + MIR SINE MIR 65 145 -63 251 200 9 67 chr3 22256747 22256852 -195780306 + G-rich Low_complexity Low_complexity 6 104 0 24 0 0 0 chr3 22257063 22257087 -195780071 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 22257096 22257120 -195780038 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 22258548 22258572 -195778586 + GC_rich Low_complexity Low_complexity 1 24 0 40 21 0 0 chr3 22258727 22258774 -195778384 + GC_rich Low_complexity Low_complexity 1 47 0 202 229 38 95 chr3 22258909 22259014 -195778144 + MIR3 SINE MIR 86 184 -24 853 226 19 28 chr3 22259155 22259367 -195777791 - MIR SINE MIR -7 255 46 407 322 28 17 chr3 22259612 22259789 -195777369 + MIR SINE MIR 59 237 -25 312 293 68 94 chr3 22259909 22260261 -195776897 - L2 LINE L2 -74 3239 2897 846 276 162 48 chr3 22260432 22261088 -195776070 + L2 LINE L2 2566 3311 -2 21 71 0 0 chr3 22262657 22262699 -195774459 + AT_rich Low_complexity Low_complexity 1 42 0 2207 121 3 3 chr3 22264385 22264691 -195772467 - AluSq SINE Alu -7 306 1 977 172 11 1 chr3 22264973 22265194 -195771964 - L1MCa LINE L1 -4979 1628 1204 2137 147 0 3 chr3 22265206 22265519 -195771639 - AluSx SINE Alu 0 312 1 873 152 23 0 chr3 22265520 22265652 -195771506 - AluJo SINE Alu -177 135 1 358 236 55 0 chr3 22265654 22265764 -195771394 - L1MCa LINE L1 -5248 1178 1063 10875 152 29 12 chr3 22265776 22265926 -195771232 - L1MA2 LINE L1 0 6304 6158 2010 116 41 10 chr3 22265926 22265946 -195771212 - AluSp SINE Alu -12 301 283 225 0 0 0 chr3 22265946 22265971 -195771187 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2010 116 41 10 chr3 22265971 22266242 -195770916 - AluSp SINE Alu -30 283 1 2257 117 7 0 chr3 22266242 22266541 -195770617 - AluSq SINE Alu -11 302 1 10875 152 29 12 chr3 22266541 22268855 -195768303 - L1MA2 LINE L1 -146 6158 3772 2037 148 7 0 chr3 22268855 22269152 -195768006 - AluSx SINE Alu -13 299 1 10875 152 29 12 chr3 22269152 22269864 -195767294 - L1MA2 LINE L1 -2532 3772 3073 * 25895 82 8 3 chr3 22269859 22274433 -195762725 - L1PA7 LINE L1 0 6469 1867 42368 42 4 3 chr3 22274434 22280579 -195756579 - L1PA4 LINE L1 -2 6153 2 12201 107 5 7 chr3 22280579 22282470 -195754688 - L1PA7 LINE L1 -4579 1872 5 2039 117 37 27 chr3 22282476 22282774 -195754384 - AluSp SINE Alu -12 301 1 2390 224 23 5 chr3 22282810 22283414 -195753744 - L1MA2 LINE L1 -3065 3081 2467 1203 209 72 0 chr3 22283416 22283723 -195753435 - L1MCa LINE L1 -5344 1082 754 243 62 0 0 chr3 22284314 22284346 -195752812 - MIR SINE MIR -118 144 113 483 239 83 63 chr3 22284871 22284979 -195752179 - MIR SINE MIR -18 244 140 1323 166 42 143 chr3 22284979 22285413 -195751745 - MLT1B LTR MaLR 0 390 1 483 239 83 63 chr3 22285413 22285519 -195751639 - MIR SINE MIR -122 140 31 219 333 0 0 chr3 22285560 22285626 -195751532 + MIR SINE MIR 160 225 -37 2946 266 108 32 chr3 22286039 22286735 -195750423 + L1MEc LINE L1 53 694 -5702 1464 219 0 3 chr3 22286735 22287018 -195750140 + AluJo SINE Alu 1 282 -30 2946 266 108 32 chr3 22287018 22287853 -195749305 + L1MEc LINE L1 694 1875 -4521 804 175 0 0 chr3 22287858 22287978 -195749180 - FLAM_A SINE Alu -13 120 1 1956 128 0 3 chr3 22288136 22288440 -195748718 - Tigger2 DNA MER2_type -1 2717 2415 1572 119 9 107 chr3 22288437 22288765 -195748393 - Tigger2a DNA MER2_type -138 296 1 * 297 0 0 0 chr3 22288782 22288815 -195748343 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 238 0 0 chr3 22288815 22288857 -195748301 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 1271 125 175 12 chr3 22288947 22289219 -195747939 - AluSg1 SINE Alu 0 311 1 2427 50 0 3 chr3 22289260 22289559 -195747599 - AluY SINE Alu -13 298 1 217 233 75 83 chr3 22289919 22290039 -195747119 + MER5B DNA MER1_type 1 119 -59 263 279 82 74 chr3 22290093 22290215 -195746943 - MIR SINE MIR -90 172 50 204 319 99 60 chr3 22290266 22290548 -195746610 + L2 LINE L2 2341 2633 -681 * 350 300 75 57 chr3 22290535 22290762 -195746396 + L2 LINE L2 3042 3272 0 223 322 102 0 chr3 22290822 22290940 -195746218 + L2 LINE L2 3141 3270 -2 695 309 53 42 chr3 22290949 22291308 -195745850 + L2 LINE L2 2951 3313 0 214 308 88 0 chr3 22291315 22291406 -195745752 + MIR SINE MIR 64 162 -100 1394 262 51 15 chr3 22291434 22291827 -195745331 + MLT1I LTR MaLR 2 408 -1 381 248 144 13 chr3 22292000 22292153 -195745005 - MIR SINE MIR -70 192 20 206 307 228 0 chr3 22292852 22292966 -195744192 - MIR SINE MIR -77 185 46 191 273 34 34 chr3 22293128 22293216 -195743942 + MIR SINE MIR 65 152 -110 629 337 29 32 chr3 22293385 22293729 -195743429 - L1ME LINE L1 -513 5651 5309 2094 106 0 0 chr3 22294131 22294415 -195742743 + AluSg SINE Alu 7 290 -20 793 282 83 53 chr3 22295771 22296182 -195740976 + L2 LINE L2 2889 3311 -2 229 220 20 0 chr3 22296257 22296307 -195740851 + Charlie7 DNA MER1_type 51 101 -2511 246 298 18 9 chr3 22296493 22296607 -195740551 - L1ME3 LINE L1 -198 5964 5850 400 259 33 106 chr3 22297360 22297634 -195739524 + MER102b DNA MER1_type 83 336 -5 390 286 62 26 chr3 22297970 22298197 -195738961 + L2 LINE L2 2625 2859 -455 195 271 21 0 chr3 22298381 22298429 -195738729 + L2 LINE L2 3195 3243 -70 293 307 35 35 chr3 22298827 22298941 -195738217 - MIR SINE MIR -55 153 40 192 40 0 0 chr3 22299004 22299029 -195738129 + (CA)n Simple_repeat Simple_repeat 2 26 0 268 171 143 14 chr3 22299093 22299163 -195737995 - MIR SINE MIR -121 141 63 272 227 15 0 chr3 22299623 22299689 -195737469 + MER116 DNA Mariner 2 68 -12 774 274 56 22 chr3 22299952 22300362 -195736796 - L2 LINE L2 -310 3003 2564 816 180 60 18 chr3 22300848 22301015 -195736143 - MLT1J LTR MaLR -297 214 41 402 286 31 79 chr3 22301250 22301477 -195735681 - MLT1K LTR MaLR -214 374 159 1594 169 35 58 chr3 22301523 22301867 -195735291 - MLT1B LTR MaLR 0 390 55 208 250 148 37 chr3 22301970 22302078 -195735080 - L2 LINE L2 -221 3051 2932 429 215 23 23 chr3 22302288 22302460 -195734698 + CT-rich Low_complexity Low_complexity 1 172 0 204 40 0 0 chr3 22302718 22302743 -195734415 + (TTCCC)n Simple_repeat Simple_repeat 2 26 0 1370 181 75 10 chr3 22302770 22303062 -195734096 - AluJo SINE Alu -1 311 1 376 353 12 0 chr3 22303363 22303530 -195733628 - L1ME LINE L1 -710 5460 5292 195 301 97 21 chr3 22303762 22303855 -195733303 - MIR3 SINE MIR -53 155 56 282 303 125 7 chr3 22303972 22304124 -195733034 + MIR SINE MIR 22 191 -71 435 291 70 48 chr3 22304265 22304536 -195732622 + L2 LINE L2 2498 2774 -540 342 306 112 12 chr3 22304553 22304811 -195732347 + L2 LINE L2 2888 3171 -142 326 244 92 42 chr3 22304879 22304998 -195732160 + MIR SINE MIR 138 262 0 435 318 68 51 chr3 22305230 22305526 -195731632 + L2 LINE L2 3010 3310 -3 318 350 173 9 chr3 22305680 22305894 -195731264 - L3 LINE CR1 -722 855 607 353 331 0 8 chr3 22305981 22306105 -195731053 - MER103 DNA DNA -13 153 31 23 33 0 0 chr3 22306498 22306528 -195730630 + AT_rich Low_complexity Low_complexity 1 30 0 399 89 0 0 chr3 22307818 22307874 -195729284 + (CA)n Simple_repeat Simple_repeat 2 57 0 741 305 56 4 chr3 22308105 22308338 -195728820 - MIR SINE MIR 0 262 18 238 284 0 0 chr3 22308368 22308442 -195728716 - L2 LINE L2 -284 2988 2915 309 294 29 28 chr3 22309116 22309248 -195727910 - MIR SINE MIR -63 145 58 414 241 19 9 chr3 22309798 22309906 -195727252 + L2 LINE L2 3204 3312 -1 430 279 62 37 chr3 22310186 22310347 -195726811 + MIR SINE MIR 77 241 -21 276 286 0 82 chr3 22310628 22310726 -195726432 + MIR3 SINE MIR 91 180 -28 405 267 124 45 chr3 22310971 22311173 -195725985 + MIR SINE MIR 35 252 -10 351 343 7 21 chr3 22311335 22311478 -195725680 + MIR SINE MIR 108 248 -14 306 286 78 106 chr3 22311536 22311753 -195725405 - L2 LINE L2 0 3313 3103 539 155 64 8 chr3 22311864 22311984 -195725174 - MIR SINE MIR -71 137 36 382 268 71 71 chr3 22312170 22312353 -195724805 - MIR SINE MIR -3 259 77 450 188 31 21 chr3 22313371 22313467 -195723691 - MIR SINE MIR -109 153 57 269 343 28 0 chr3 22313666 22313774 -195723384 - L1MEd LINE L1 -5568 551 441 2001 142 10 10 chr3 22314256 22314736 -195722422 - AluSx SINE Alu 0 312 1 399 252 29 19 chr3 22314982 22315085 -195722073 - MIR SINE MIR -136 126 23 290 359 58 0 chr3 22315527 22315630 -195721528 - MIR SINE MIR -51 211 103 510 289 47 26 chr3 22315872 22316062 -195721096 - MIR SINE MIR -48 214 21 223 366 181 12 chr3 22316777 22317020 -195720138 + L3 LINE CR1 555 838 -739 456 174 0 0 chr3 22317034 22317126 -195720032 + CT-rich Low_complexity Low_complexity 3 94 0 335 309 246 5 chr3 22317919 22318139 -195719019 + L2 LINE L2 3000 3272 0 180 298 0 0 chr3 22318472 22318519 -195718639 - MIR3 SINE MIR -53 155 109 811 302 126 29 chr3 22321360 22321781 -195715377 + L2 LINE L2 2852 3313 0 400 191 191 0 chr3 22321826 22321952 -195715206 - MER53 DNA DNA 0 189 40 4228 206 42 31 chr3 22321963 22323200 -195713958 - L1MD1 LINE L1 -1 6241 4992 25 75 0 0 chr3 22323200 22323253 -195713905 + AT_rich Low_complexity Low_complexity 1 53 0 1798 186 0 12 chr3 22323273 22323606 -195713552 - L1MB3 LINE L1 -2 6181 5853 200 328 48 16 chr3 22323790 22323915 -195713243 - MIR3 SINE MIR -65 143 15 799 276 25 21 chr3 22324664 22324907 -195712251 - MIR SINE MIR -12 250 7 594 240 105 40 chr3 22325633 22325785 -195711373 + MIR SINE MIR 48 217 -45 786 194 156 0 chr3 22325785 22325965 -195711193 - MER3 DNA MER1_type 0 209 2 594 240 105 40 chr3 22325965 22326012 -195711146 + MIR SINE MIR 217 260 -2 199 348 70 0 chr3 22326632 22326747 -195710411 - MIR SINE MIR -22 240 118 389 369 6 13 chr3 22326965 22327122 -195710036 - MIR SINE MIR -86 176 21 2045 123 3 3 chr3 22327225 22327527 -195709631 + AluSx SINE Alu 1 302 -10 218 309 15 0 chr3 22327599 22327667 -195709491 - MIR SINE MIR -77 185 117 447 318 50 11 chr3 22327804 22327983 -195709175 + MIR SINE MIR 56 241 -21 795 281 56 35 chr3 22328403 22328780 -195708378 + L2 LINE L2 2245 2629 -685 923 275 83 27 chr3 22328956 22329491 -195707667 + L2 LINE L2 2583 3154 -159 967 246 33 0 chr3 22329676 22329887 -195707271 - MIR SINE MIR -25 237 20 288 307 109 15 chr3 22329918 22330055 -195707103 - L2 LINE L2 0 3313 3164 405 184 4 45 chr3 22330398 22330664 -195706494 + (TGGA)n Simple_repeat Simple_repeat 1 254 0 24 71 0 0 chr3 22330670 22330698 -195706460 + GC_rich Low_complexity Low_complexity 1 28 0 304 270 167 29 chr3 22331457 22331661 -195705497 - L2 LINE L2 -198 3115 2884 500 219 130 34 chr3 22332415 22332561 -195704597 - MER5A DNA MER1_type -26 163 4 1169 201 75 60 chr3 22332572 22332891 -195704267 - MER33 DNA MER1_type 0 324 1 261 333 181 9 chr3 22332891 22333107 -195704051 - L3 LINE CR1 -105 1472 1220 338 277 23 54 chr3 22333161 22333291 -195703867 - MIR SINE MIR -84 178 53 312 27 0 0 chr3 22334158 22334195 -195702963 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 185 342 111 26 chr3 22334201 22334318 -195702840 - L2 LINE L2 -15 3298 3172 251 305 12 0 chr3 22334446 22334528 -195702630 - L2 LINE L2 -335 2978 2896 498 253 29 58 chr3 22335193 22335367 -195701791 + MER5B DNA MER1_type 5 173 -5 2969 162 21 0 chr3 22335524 22336035 -195701123 - L1MB7 LINE L1 0 6184 5663 281 289 18 24 chr3 22336556 22336722 -195700436 + L2 LINE L2 2871 3035 -237 1182 271 95 24 chr3 22336763 22337225 -195699933 - L2 LINE L2 -2 3311 2817 353 293 54 24 chr3 22337427 22337594 -195699564 - L1MC5 LINE L1 -187 7774 7603 201 154 0 0 chr3 22337861 22337900 -195699258 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 200 321 0 18 chr3 22338449 22338561 -195698597 + (TG)n Simple_repeat Simple_repeat 1 110 0 457 183 0 62 chr3 22339168 22339438 -195697720 + GA-rich Low_complexity Low_complexity 1 253 0 759 120 0 46 chr3 22339444 22339619 -195697539 + (GGA)n Simple_repeat Simple_repeat 2 168 0 761 318 74 19 chr3 22339786 22340204 -195696954 - LTR16A LTR ERVL -9 441 1 401 261 39 26 chr3 22340285 22340438 -195696720 + MIR SINE MIR 31 185 -77 277 281 132 0 chr3 22340852 22340966 -195696192 - LTR33 LTR ERVL -28 493 365 277 277 50 43 chr3 22342061 22342202 -195694956 - MIR3 SINE MIR -61 147 6 693 274 109 43 chr3 22342377 22342680 -195694478 - MLT1L LTR MaLR -8 607 285 183 217 22 167 chr3 22342733 22342871 -195694287 - MIR SINE MIR -75 133 16 615 283 55 81 chr3 22343225 22343607 -195693551 - MLT1K LTR MaLR -6 582 211 680 297 246 24 chr3 22344416 22345033 -195692125 - L3 LINE CR1 -58 1519 766 389 319 92 0 chr3 22345782 22346011 -195691147 - LTR16A LTR ERVL 0 450 201 556 232 106 50 chr3 22346097 22346295 -195690863 - MER63A DNA MER1_type 0 210 2 581 358 46 7 chr3 22346658 22346965 -195690193 - L1MC4a LINE L1 -1874 5934 5616 1001 266 113 6 chr3 22347137 22347201 -195689957 - LTR33 LTR ERVL 0 521 465 2243 183 15 29 chr3 22347201 22347655 -195689503 + L1MB8 LINE L1 5731 6178 0 1001 266 113 6 chr3 22347655 22347954 -195689204 - LTR33 LTR ERVL -56 465 119 184 176 0 0 chr3 22348346 22348380 -195688778 - L2 LINE L2 -18 3254 3221 4031 162 57 14 chr3 22348979 22349768 -195687390 - L1MB7 LINE L1 0 6184 5362 1518 300 30 35 chr3 22349785 22350464 -195686694 - L1ME3A LINE L1 -13 6157 5483 182 247 106 12 chr3 22351017 22351102 -195686056 + L2 LINE L2 3173 3265 -7 183 184 0 0 chr3 22351652 22351690 -195685468 + GA-rich Low_complexity Low_complexity 3 40 0 259 323 32 0 chr3 22351806 22351899 -195685259 + MER58A DNA MER1_type 1 96 -11 701 214 20 2 chr3 22351899 22352071 -195685087 - L1ME3 LINE L1 -226 5936 5765 287 193 114 11 chr3 22352074 22352162 -195684996 - MIR SINE MIR -67 141 45 32 0 0 0 chr3 22353099 22353131 -195684027 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 22353593 22353621 -195683537 + AT_rich Low_complexity Low_complexity 1 28 0 226 321 0 12 chr3 22353623 22353704 -195683454 - L1PB1 LINE L1 -174 5977 5898 432 0 0 0 chr3 22354256 22354304 -195682854 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 266 0 0 chr3 22354832 22355009 -195682149 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 409 244 49 34 chr3 22355342 22355497 -195681661 + MIR SINE MIR 105 262 0 475 294 112 6 chr3 22355745 22355915 -195681243 - Charlie8 DNA MER1_type -2205 212 25 318 290 75 0 chr3 22355962 22356069 -195681089 - MIR SINE MIR -61 147 33 189 0 0 0 chr3 22356152 22356173 -195680985 + (CA)n Simple_repeat Simple_repeat 2 22 0 1707 235 55 55 chr3 22357596 22358107 -195679051 - MLT1H LTR MaLR 0 549 39 324 252 170 0 chr3 22358216 22358351 -195678807 + L2 LINE L2 2423 2580 -734 304 200 147 0 chr3 22358406 22358481 -195678677 + MLT1J2 LTR MaLR 100 185 -265 258 233 17 0 chr3 22358514 22358574 -195678584 + MLT1J2 LTR MaLR 270 330 -120 345 235 182 0 chr3 22358679 22358811 -195678347 + L2 LINE L2 2886 3041 -231 869 246 84 0 chr3 22358917 22359132 -195678026 + MIR SINE MIR 5 237 -25 383 176 147 20 chr3 22359170 22359272 -195677886 + L2 LINE L2 3199 3313 0 2032 210 58 20 chr3 22360403 22360907 -195676251 + Charlie1b DNA MER1_type 1 523 0 413 268 56 91 chr3 22360969 22361075 -195676083 - MIR SINE MIR 0 262 154 3286 82 47 9 chr3 22361075 22361561 -195675597 + L1PB1 LINE L1 5678 6180 0 413 268 56 91 chr3 22361561 22361684 -195675474 - MIR SINE MIR -108 154 40 575 180 17 41 chr3 22361749 22361921 -195675237 - MER53 DNA DNA -20 169 2 2042 115 7 0 chr3 22362323 22362611 -195674547 - AluSx SINE Alu -22 290 1 228 246 51 51 chr3 22362617 22362755 -195674403 - L1ME4a LINE L1 0 6121 5984 487 322 60 21 chr3 22362844 22363077 -195674081 - L1MC4a LINE L1 -1982 5826 5585 269 333 57 21 chr3 22363190 22363331 -195673827 + L3 LINE CR1 1423 1568 -9 204 345 76 17 chr3 22363960 22364079 -195673079 + MIR SINE MIR 21 146 -116 221 333 191 14 chr3 22364707 22364848 -195672310 - MIR SINE MIR 0 262 97 569 350 0 18 chr3 22364932 22365155 -195672003 - MIR SINE MIR -37 225 7 1889 225 53 28 chr3 22365156 22365649 -195671509 - MLT1D LTR MaLR 0 505 1 896 208 19 42 chr3 22366109 22366321 -195670837 + MER3 DNA MER1_type 3 209 0 799 264 113 4 chr3 22367903 22368134 -195669024 - MIR SINE MIR -5 257 2 185 286 0 0 chr3 22368154 22368203 -195668955 - L2 LINE L2 -12 3260 3212 360 229 229 0 chr3 22368253 22368397 -195668761 - LTR33 LTR ERVL 0 521 345 352 238 74 0 chr3 22368547 22368669 -195668489 - LTR33 LTR ERVL -387 134 4 304 193 48 0 chr3 22369726 22369809 -195667349 - LTR33 LTR ERVL -134 387 301 279 270 103 16 chr3 22369820 22369946 -195667212 - LTR33 LTR ERVL -384 137 1 385 276 7 15 chr3 22370409 22370538 -195666620 + MIR SINE MIR 68 195 -64 484 120 104 32 chr3 22370614 22370739 -195666419 - MER3 DNA MER1_type 0 2576 2443 383 213 50 0 chr3 22370739 22370819 -195666339 - MER3 DNA MER1_type -80 129 46 298 136 0 0 chr3 22370974 22371018 -195666140 - MIR SINE MIR -59 149 106 333 248 28 64 chr3 22372020 22372129 -195665029 - MIR SINE MIR -114 148 44 313 333 34 0 chr3 22372264 22372381 -195664777 + MIR SINE MIR 72 192 -70 275 341 93 8 chr3 22373374 22373503 -195663655 - MIR3 SINE MIR -34 174 35 1241 224 58 19 chr3 22373510 22373818 -195663340 + MER33 DNA MER1_type 1 320 -4 530 330 25 6 chr3 22375027 22375289 -195661869 + L1MC4a LINE L1 5638 5824 -346 539 289 96 32 chr3 22375973 22376191 -195660967 - MIR SINE MIR -8 254 23 254 324 19 28 chr3 22376284 22376392 -195660766 - MIR SINE MIR -142 120 14 754 288 108 12 chr3 22377500 22377995 -195659163 - L2 LINE L2 -6 3307 2775 183 231 115 0 chr3 22378477 22378529 -195658629 + L2 LINE L2 1767 1824 -1490 * 291 244 24 37 chr3 22378513 22378595 -195658563 + MIR SINE MIR 63 143 -65 180 396 93 16 chr3 22378843 22379025 -195658133 + L3 LINE CR1 945 1140 -437 269 330 28 0 chr3 22379052 22379161 -195657997 + L3 LINE CR1 1313 1424 -153 858 155 8 10 chr3 22379439 22379946 -195657212 + GA-rich Low_complexity Low_complexity 1 506 0 330 130 0 0 chr3 22379946 22379992 -195657166 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 580 198 17 17 chr3 22379993 22380170 -195656988 + GA-rich Low_complexity Low_complexity 2 178 0 241 297 12 48 chr3 22380195 22380360 -195656798 + GA-rich Low_complexity Low_complexity 2 160 0 440 273 111 52 chr3 22580726 22581187 -195455971 + L2 LINE L2 2825 3312 -1 220 312 144 0 chr3 22581343 22581468 -195455690 + MIR3 SINE MIR 44 186 -22 189 184 0 0 chr3 22581519 22581557 -195455601 - MER5A DNA MER1_type -84 105 68 451 123 0 14 chr3 22581559 22581664 -195455494 - AluSp/q SINE Alu 0 313 224 2330 234 52 73 chr3 22581787 22582033 -195455125 + L1ME2 LINE L1 4976 5226 -938 330 26 0 0 chr3 22582033 22582072 -195455086 + (TG)n Simple_repeat Simple_repeat 2 40 0 2330 234 52 73 chr3 22582072 22582137 -195455021 + L1ME2 LINE L1 5226 5291 -873 2178 110 0 0 chr3 22582137 22582445 -195454713 + AluSx SINE Alu 1 308 -4 2330 234 52 73 chr3 22582445 22583155 -195454003 + L1ME2 LINE L1 5291 5968 -196 1771 114 3 42 chr3 22583155 22583470 -195453688 + AluSx SINE Alu 5 308 0 2330 234 52 73 chr3 22583470 22583632 -195453526 + L1ME2 LINE L1 5968 6132 -32 1858 160 0 3 chr3 22583668 22583975 -195453183 - AluJb SINE Alu -6 306 1 37 69 0 0 chr3 22583975 22584047 -195453111 + AT_rich Low_complexity Low_complexity 1 72 0 755 275 143 45 chr3 22584218 22584303 -195452855 - L1ME3 LINE L1 -218 5944 5869 231 114 0 0 chr3 22584303 22584338 -195452820 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 755 275 143 45 chr3 22584338 22584678 -195452480 - L1ME3 LINE L1 -293 5869 5477 597 242 87 34 chr3 22584698 22584962 -195452196 - MER102b DNA MER1_type -1 340 63 829 158 0 0 chr3 22584962 22585095 -195452063 + FLAM_A SINE Alu 1 133 0 1830 156 0 9 chr3 22585507 22585822 -195451336 - AluJb SINE Alu 0 312 1 286 225 42 14 chr3 22585822 22585893 -195451265 + L2 LINE L2 2687 2759 -555 330 333 27 98 chr3 22585948 22586354 -195450804 + L2 LINE L2 2882 3258 -14 232 316 72 36 chr3 22586361 22586500 -195450658 - L2 LINE L2 -27 3245 3102 207 244 139 23 chr3 22586675 22586761 -195450397 + MIR SINE MIR 5 100 -162 3991 152 70 9 chr3 22586832 22587531 -195449627 - Tigger3(Golem) DNA MER2_type -4 3025 2284 511 262 9 0 chr3 22587531 22587638 -195449520 - Tigger3(Golem) DNA MER2_type -2921 108 1 648 238 13 7 chr3 22587639 22587725 -195449433 - MIR SINE MIR -24 238 149 1638 175 0 38 chr3 22587725 22588045 -195449113 - AluJb SINE Alu -2 310 3 648 238 13 7 chr3 22588045 22588109 -195449049 - MIR SINE MIR -113 149 87 235 204 0 0 chr3 22588752 22588768 -195448390 - L2 LINE L2 -1 3312 3264 244 91 0 0 chr3 22588768 22588801 -195448357 - MIR SINE MIR -11 251 219 268 274 84 0 chr3 22588883 22588978 -195448180 + MIR SINE MIR 14 116 -146 252 320 39 0 chr3 22589027 22589130 -195448028 + L2 LINE L2 3004 3110 -162 448 291 64 41 chr3 22589143 22589315 -195447843 - MIR3 SINE MIR -16 192 17 431 285 15 15 chr3 22589332 22589481 -195447677 + MIR SINE MIR 3 150 -58 685 216 144 16 chr3 22589578 22589772 -195447386 + MIR SINE MIR 26 244 -18 281 176 59 12 chr3 22589966 22590051 -195447107 + Charlie7 DNA MER1_type 2450 2538 -74 270 331 84 7 chr3 22590146 22590288 -195446870 - MIR SINE MIR -35 227 75 483 170 0 0 chr3 22590398 22590498 -195446660 + (CA)n Simple_repeat Simple_repeat 2 101 0 236 267 50 50 chr3 22591088 22591189 -195445969 - MIR SINE MIR -62 146 46 279 309 72 14 chr3 22591459 22591598 -195445560 + MIR SINE MIR 13 159 -103 215 226 16 32 chr3 22591871 22591933 -195445225 + MIR SINE MIR 181 241 -21 1231 269 74 12 chr3 22592408 22592828 -195444330 - L1ME3A LINE L1 -5 6165 5720 236 172 17 0 chr3 22592928 22592986 -195444172 + CT-rich Low_complexity Low_complexity 4 62 0 976 270 150 37 chr3 22593173 22593713 -195443445 - L2 LINE L2 -680 2634 2034 275 49 24 0 chr3 22594093 22594134 -195443024 + (CA)n Simple_repeat Simple_repeat 2 43 0 246 224 0 53 chr3 22594630 22594706 -195442452 + L2 LINE L2 2916 2987 -285 452 294 40 0 chr3 22594740 22594866 -195442292 - MER94 DNA DNA -1 133 3 256 70 93 0 chr3 22594877 22594920 -195442238 + L2 LINE L2 3016 3062 -210 1456 222 74 15 chr3 22595067 22595472 -195441686 + MLT1C LTR MaLR 34 462 -5 914 180 40 31 chr3 22595489 22595711 -195441447 - L1MB8 LINE L1 0 6178 5955 1180 209 130 25 chr3 22595713 22596206 -195440952 + LTR48B LTR ERV1 5 585 -59 345 167 0 0 chr3 22596258 22596312 -195440846 + LTR49 LTR ERV1 542 595 0 1985 150 0 0 chr3 22596312 22596626 -195440532 - L1MB8 LINE L1 -218 5960 5647 1510 135 42 0 chr3 22596979 22597238 -195439920 - AluJo SINE Alu -22 290 21 463 323 56 5 chr3 22598755 22598950 -195438208 - MIR SINE MIR -8 254 50 208 203 6 13 chr3 22599020 22599088 -195438070 - L2 LINE L2 -309 3004 2938 * 240 167 21 21 chr3 22599079 22599127 -195438031 + MIR SINE MIR 96 143 -65 239 302 0 31 chr3 22599786 22599882 -195437276 - L2 LINE L2 -215 3057 2965 490 283 17 0 chr3 22599893 22600039 -195437119 + MIR SINE MIR 14 166 -42 720 247 70 5 chr3 22600052 22600238 -195436920 - MER63A DNA MER1_type -10 200 3 372 364 6 6 chr3 22600676 22600838 -195436320 - L2 LINE L2 -528 2786 2625 1624 217 65 5 chr3 22600896 22601265 -195435893 + MLT1J2 LTR MaLR 38 428 -22 739 133 0 0 chr3 22601839 22601944 -195435214 + FLAM_A SINE Alu 25 129 -13 534 211 102 0 chr3 22601973 22602101 -195435057 - MIR SINE MIR -13 249 109 1666 162 0 14 chr3 22602779 22603063 -195434095 + AluJo SINE Alu 1 280 -32 729 0 0 0 chr3 22603063 22603144 -195434014 + (TAAAA)n Simple_repeat Simple_repeat 1 81 0 344 250 108 68 chr3 22603181 22603357 -195433801 + MLT1L LTR MaLR 212 394 -221 348 239 77 34 chr3 22603619 22603736 -195433422 - MLT1K LTR MaLR -300 288 167 237 215 108 15 chr3 22603716 22603781 -195433377 - MLT1K LTR MaLR -333 255 185 * 197 282 154 0 chr3 22604079 22604196 -195432962 + MIR3 SINE MIR 45 179 -29 372 260 177 21 chr3 22604206 22604398 -195432760 + MIR SINE MIR 28 249 -13 395 245 71 5 chr3 22605107 22605261 -195431897 - MIR SINE MIR -61 147 14 642 299 128 7 chr3 22605365 22605646 -195431512 + L2 LINE L2 2956 3270 -2 239 239 0 0 chr3 22606529 22606575 -195430583 - L3 LINE CR1 -640 937 892 300 281 47 31 chr3 22606662 22606790 -195430368 + L2 LINE L2 3119 3248 -24 1128 145 16 57 chr3 22606928 22607176 -195429982 - AluJo SINE Alu -74 238 1 207 57 0 94 chr3 22607382 22607435 -195429723 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 183 139 0 0 chr3 22607736 22607772 -195429386 + (T)n Simple_repeat Simple_repeat 1 36 0 863 143 71 15 chr3 22607893 22608207 -195428951 - L1MCa LINE L1 -4501 1925 1503 2000 120 0 7 chr3 22608210 22608494 -195428664 + MER4D LTR ERV1 4 285 -618 1492 174 42 11 chr3 22608598 22608885 -195428273 - AluJo SINE Alu -13 299 4 478 225 120 38 chr3 22608907 22609130 -195428028 + L1ME4a LINE L1 5622 5855 -266 1273 111 72 53 chr3 22609347 22609423 -195427735 - L1MA5A LINE L1 0 6297 6224 1469 130 13 26 chr3 22609423 22609653 -195427505 - MER30 DNA MER1_type -2 228 2 1273 111 72 53 chr3 22609653 22609838 -195427320 - L1MA5A LINE L1 -73 6224 6031 21 0 0 0 chr3 22609982 22610003 -195427155 + AT_rich Low_complexity Low_complexity 1 21 0 2279 148 87 5 chr3 22610228 22610675 -195426483 + MER31A LTR ERV1 1 484 -1 202 304 76 0 chr3 22612153 22612245 -195424913 - MIR SINE MIR -59 203 105 2780 142 81 86 chr3 22614273 22614509 -195422649 - L1MB2 LINE L1 -37 6134 5898 2032 116 0 13 chr3 22614509 22614810 -195422348 - AluSq SINE Alu -16 297 1 2780 142 81 86 chr3 22614810 22615086 -195422072 - L1MB2 LINE L1 -273 5898 5620 2155 99 26 0 chr3 22615086 22615388 -195421770 + AluSp SINE Alu 2 311 -2 2780 142 81 86 chr3 22615388 22615542 -195421616 - L1MB2 LINE L1 -551 5620 5467 985 211 37 29 chr3 22615542 22615784 -195421374 - AluJo SINE Alu -3 309 66 752 184 133 82 chr3 22616925 22617158 -195420000 - MIR SINE MIR 0 262 18 534 245 20 27 chr3 22617982 22618129 -195419029 - L2 LINE L2 -1 3312 3167 651 213 0 53 chr3 22618180 22618418 -195418740 + MLT1D LTR MaLR 233 505 0 318 301 0 0 chr3 22618472 22618555 -195418603 - L2 LINE L2 -5 3308 3226 851 114 0 23 chr3 22618585 22618717 -195418441 + AluJ SINE Alu 1 129 -183 378 0 0 0 chr3 22619100 22619142 -195418016 + (CA)n Simple_repeat Simple_repeat 2 43 0 1376 249 22 40 chr3 22619360 22619472 -195417686 - L1MC4 LINE L1 0 8042 7930 1818 143 3 10 chr3 22619472 22619773 -195417385 + AluJb SINE Alu 1 299 -13 1376 249 22 40 chr3 22619773 22620162 -195416996 - L1MC4 LINE L1 -112 7930 7550 246 153 0 0 chr3 22620599 22620658 -195416500 + T-rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr3 22620788 22620810 -195416348 + AT_rich Low_complexity Low_complexity 1 22 0 810 185 38 8 chr3 22620874 22621134 -195416024 - L1MD2 LINE L1 0 6359 6041 1245 247 101 33 chr3 22621640 22622037 -195415121 + MLT1E LTR MaLR 52 475 -118 672 196 75 117 chr3 22622042 22622199 -195414959 + MLT1B LTR MaLR 2 145 -245 608 233 17 85 chr3 22622199 22622294 -195414864 + AluJ SINE Alu 138 217 -85 1897 105 9 62 chr3 22622294 22622619 -195414539 - AluSx SINE Alu -4 308 1 608 233 17 85 chr3 22622619 22622699 -195414459 + AluJ SINE Alu 217 301 -1 672 196 75 117 chr3 22622699 22622806 -195414352 + MLT1B LTR MaLR 145 255 -135 225 256 51 103 chr3 22622923 22623001 -195414157 + L2 LINE L2 3191 3264 -8 1948 215 113 59 chr3 22623946 22624573 -195412585 + Charlie1a DNA MER1_type 9 669 -786 3334 145 38 33 chr3 22624680 22625188 -195411970 - L1MA5A LINE L1 -470 5827 5323 180 0 0 0 chr3 22625188 22625208 -195411950 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3334 145 38 33 chr3 22625208 22625574 -195411584 - L1MA5A LINE L1 -974 5323 4963 2086 108 3 19 chr3 22625574 22625881 -195411277 + AluSp SINE Alu 6 307 -6 3334 145 38 33 chr3 22625881 22626003 -195411155 - L1MA5A LINE L1 -1334 4963 4843 2127 123 0 3 chr3 22626003 22626312 -195410846 + AluSx SINE Alu 1 308 -4 1209 121 20 15 chr3 22626312 22626511 -195410647 - L1MA5A LINE L1 -1817 4329 4130 331 298 106 13 chr3 22626764 22626915 -195410243 + L1M4 LINE L1 3248 3412 -2734 313 299 108 29 chr3 22627440 22627578 -195409580 - MIR SINE MIR -66 142 13 1583 256 162 41 chr3 22628922 22629932 -195407226 - HAL1 LINE L1 -606 1901 769 3384 140 28 2 chr3 22630744 22631278 -195405880 + MER4D LTR ERV1 347 894 -9 2632 154 90 67 chr3 22631328 22631950 -195405208 - L1MCb LINE L1 -4848 1197 956 1926 134 3 7 chr3 22631950 22632240 -195404918 - AluSx SINE Alu -23 289 1 2632 154 90 67 chr3 22632240 22632366 -195404792 - L1MCb LINE L1 -5089 956 834 572 266 179 4 chr3 22632485 22632714 -195404444 + L2 LINE L2 3040 3308 -5 28 71 0 0 chr3 22633227 22633283 -195403875 + AT_rich Low_complexity Low_complexity 1 56 0 450 282 110 31 chr3 22634396 22634623 -195402535 + MIR SINE MIR 16 260 -2 295 200 35 24 chr3 22635034 22635119 -195402039 + MIR SINE MIR 37 122 -140 50 83 0 0 chr3 22635254 22635374 -195401784 + GC_rich Low_complexity Low_complexity 1 120 0 260 228 0 30 chr3 22635381 22635482 -195401676 + (CCGCG)n Simple_repeat Simple_repeat 5 102 0 770 279 29 24 chr3 22635824 22636032 -195401126 - MER58A DNA MER1_type 0 224 16 898 338 159 27 chr3 22636156 22637080 -195400078 + L2 LINE L2 1932 2977 -337 25 0 0 0 chr3 22637907 22637932 -195399226 + AT_rich Low_complexity Low_complexity 1 25 0 265 259 52 0 chr3 22638098 22638156 -195399002 + L2 LINE L2 3181 3241 -31 1879 58 0 8 chr3 22638333 22638573 -195398585 - AluSc SINE Alu -1 308 71 2458 74 0 0 chr3 22638573 22638884 -195398274 - AluY SINE Alu 0 311 1 474 185 12 0 chr3 22638885 22638966 -195398192 - AluSc SINE Alu -226 83 2 2627 170 52 6 chr3 22639601 22640137 -195397021 + L1MB8 LINE L1 5612 6172 -6 2282 62 3 3 chr3 22640139 22640430 -195396728 + AluY SINE Alu 1 291 -20 286 263 144 42 chr3 22640568 22640922 -195396236 + L1MEc LINE L1 1428 1817 -4579 1631 138 67 32 chr3 22640991 22641303 -195395855 + Tigger2a DNA MER2_type 21 343 -91 265 292 22 0 chr3 22641486 22641623 -195395535 + L1MEc LINE L1 2133 2272 -4124 1908 154 3 0 chr3 22641623 22641922 -195395236 + AluJb SINE Alu 1 300 -12 2254 66 0 10 chr3 22642207 22642495 -195394663 + AluSg SINE Alu 1 285 -25 254 191 21 0 chr3 22643086 22643133 -195394025 - MIR SINE MIR -62 146 99 189 227 0 0 chr3 22643948 22643992 -195393166 + L3 LINE CR1 1468 1511 -66 245 302 70 0 chr3 22644253 22644339 -195392819 + MIR SINE MIR 48 139 -123 243 0 0 0 chr3 22644660 22644687 -195392471 + (TG)n Simple_repeat Simple_repeat 2 28 0 744 239 12 0 chr3 22644731 22644894 -195392264 - FRAM SINE Alu -1 165 1 2022 85 11 11 chr3 22644915 22645196 -195391962 - AluSx SINE Alu -17 295 15 418 247 133 20 chr3 22645406 22645556 -195391602 + MIR3 SINE MIR 8 174 -34 2058 130 0 3 chr3 22645562 22645863 -195391295 + AluSx SINE Alu 1 300 -12 731 191 15 0 chr3 22646179 22646310 -195390848 + FLAM_A SINE Alu 1 133 0 217 234 31 0 chr3 22646948 22647012 -195390146 - MIR SINE MIR -97 111 46 * 1061 188 25 15 chr3 22647004 22647206 -195389952 - MIR SINE MIR -35 227 24 684 240 112 46 chr3 22647592 22647896 -195389262 + MER5C DNA MER1_type 1 324 0 680 117 16 39 chr3 22648042 22648170 -195388988 - MER20 DNA MER1_type 0 219 95 1518 158 38 10 chr3 22648970 22649262 -195387896 - AluJb SINE Alu -12 300 1 297 151 38 0 chr3 22649269 22649322 -195387836 + Alu SINE Alu 245 299 -3 186 209 0 0 chr3 22650113 22650156 -195387002 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 456 19 0 0 chr3 22650158 22650211 -195386947 + (CA)n Simple_repeat Simple_repeat 2 54 0 2094 101 0 3 chr3 22650260 22650556 -195386602 - AluSq SINE Alu -1 312 18 1243 242 80 102 chr3 22652039 22652394 -195384764 + L1M4 LINE L1 3548 3909 -2237 840 184 38 6 chr3 22652394 22652552 -195384606 - AluJo/FRAM SINE Alu -3 299 137 297 114 23 0 chr3 22652552 22652596 -195384562 - Alu SINE Alu -254 45 1 1243 242 80 102 chr3 22652596 22652850 -195384308 + L1M4 LINE L1 3908 4184 -1962 2015 146 0 0 chr3 22652850 22653158 -195384000 + AluSx SINE Alu 1 308 -4 1243 242 80 102 chr3 22653158 22653268 -195383890 + L1M4 LINE L1 4184 4295 -1851 21 0 0 0 chr3 22653393 22653414 -195383744 + AT_rich Low_complexity Low_complexity 1 21 0 493 264 169 7 chr3 22654282 22654430 -195382728 + MER5A DNA MER1_type 4 175 -14 1105 173 59 0 chr3 22654515 22654735 -195382423 - Tigger7 DNA MER2_type 0 2587 2355 426 285 103 0 chr3 22654981 22655146 -195382012 + L1MC4a LINE L1 5747 5928 -1880 189 0 0 0 chr3 22655176 22655197 -195381961 + (TG)n Simple_repeat Simple_repeat 2 22 0 295 229 43 14 chr3 22656529 22656599 -195380559 + L3 LINE CR1 987 1058 -519 186 71 0 0 chr3 22656884 22656912 -195380246 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1541 129 165 39 chr3 22657042 22657209 -195379949 - THE1C LTR MaLR 0 375 230 297 0 0 0 chr3 22657209 22657242 -195379916 + (GA)n Simple_repeat Simple_repeat 1 33 0 1541 129 165 39 chr3 22657242 22657407 -195379751 - THE1C LTR MaLR -145 230 1 282 296 130 35 chr3 22658140 22658255 -195378903 + MIR SINE MIR 14 139 -123 1217 124 0 0 chr3 22658957 22659135 -195378023 - AluSg/x SINE Alu -6 304 127 21 57 0 0 chr3 22659592 22659627 -195377531 + AT_rich Low_complexity Low_complexity 1 35 0 236 277 54 69 chr3 22660117 22660247 -195376911 - MIR SINE MIR -115 147 20 2221 90 3 7 chr3 22660579 22660889 -195376269 + AluSc SINE Alu 1 309 0 1491 234 37 18 chr3 22661200 22661581 -195375577 - MER72 LTR ERV1 -334 388 1 484 285 75 5 chr3 22661683 22661869 -195375289 - MIR SINE MIR -6 256 58 493 278 194 15 chr3 22661931 22662194 -195374964 - MLT1J2 LTR MaLR 0 450 141 549 186 41 3 chr3 22662220 22662395 -195374763 - LTR16A1 LTR ERVL 0 457 232 454 259 82 27 chr3 22662427 22662574 -195374584 - LTR16A1 LTR ERVL -302 155 1 301 207 58 11 chr3 22663404 22663491 -195373667 - MIR SINE MIR -77 131 41 376 218 109 54 chr3 22663831 22663978 -195373180 - MER113 DNA MER1_type? -78 443 289 1850 147 3 3 chr3 22664110 22664403 -195372755 + AluJb SINE Alu 1 293 -19 282 257 101 74 chr3 22664849 22664997 -195372161 - L2 LINE L2 -6 3266 3115 367 225 46 43 chr3 22664997 22665195 -195371963 - MIR SINE MIR 0 262 29 1160 122 5 41 chr3 22665202 22665399 -195371759 - AluSp SINE Alu -13 300 111 434 198 58 50 chr3 22665509 22665630 -195371528 - MIR SINE MIR -57 151 30 191 224 35 17 chr3 22666545 22666603 -195370555 + MIR SINE MIR 86 144 -118 324 200 137 63 chr3 22666757 22666852 -195370306 - MIR SINE MIR -114 148 47 227 256 0 12 chr3 22667229 22667315 -195369843 + T-rich Low_complexity Low_complexity 5 89 0 2010 119 10 0 chr3 22667550 22667677 -195369481 + AluSx SINE Alu 1 125 -187 207 0 0 0 chr3 22667677 22667700 -195369458 + (CA)n Simple_repeat Simple_repeat 2 24 0 2010 119 10 0 chr3 22667700 22667874 -195369284 + AluSx SINE Alu 125 305 -7 180 200 0 0 chr3 22668144 22668184 -195368974 + A-rich Low_complexity Low_complexity 1 40 0 267 307 0 34 chr3 22670180 22670356 -195366802 + C-rich Low_complexity Low_complexity 3 172 0 185 226 57 19 chr3 22671614 22671667 -195365491 - MIR3 SINE MIR -46 162 108 252 258 14 14 chr3 22671855 22671939 -195365219 - MIR SINE MIR -72 136 67 1236 174 13 4 chr3 22672174 22672410 -195364748 - AluJb SINE Alu -3 309 72 534 239 9 0 chr3 22672862 22672975 -195364183 - MIR SINE MIR -143 119 6 422 235 228 0 chr3 22673222 22673371 -195363787 + MER5A DNA MER1_type 7 189 0 1153 101 12 6 chr3 22674351 22674519 -195362639 - AluY SINE Alu -7 304 136 383 294 48 0 chr3 22674521 22674647 -195362511 + MIR SINE MIR 84 215 -47 416 257 71 5 chr3 22674753 22674904 -195362254 - MIR SINE MIR -13 249 88 726 281 128 0 chr3 22675417 22675666 -195361492 - ERVL LTR ERVL -3649 2115 1835 748 172 8 15 chr3 22675792 22675926 -195361232 + FLAM_C SINE Alu 1 133 0 1576 130 80 11 chr3 22676169 22676445 -195360713 + AluSx SINE Alu 1 295 -17 204 315 183 7 chr3 22676538 22676741 -195360417 + MIR SINE MIR 20 255 -7 855 165 0 0 chr3 22676911 22677044 -195360114 - FLAM_C SINE Alu 0 133 1 21 82 0 0 chr3 22677050 22677099 -195360059 + AT_rich Low_complexity Low_complexity 1 49 0 1736 116 118 12 chr3 22677119 22677448 -195359710 - LTR23 LTR ERV1 -1 436 73 1988 94 0 22 chr3 22677957 22678234 -195358924 + AluSg SINE Alu 9 279 -31 23 0 0 0 chr3 22678235 22678258 -195358900 + GC_rich Low_complexity Low_complexity 1 23 0 279 298 165 8 chr3 22678330 22678451 -195358707 - L2 LINE L2 -4 3268 3129 799 165 0 0 chr3 22678579 22678700 -195358458 - FRAM SINE Alu -18 158 38 385 228 119 51 chr3 22679124 22679306 -195357852 + L1MC4a LINE L1 5653 5747 -407 2327 84 63 20 chr3 22679306 22679653 -195357505 - THE1B LTR MaLR -2 362 1 385 228 119 51 chr3 22679653 22679729 -195357429 + L1MC4a LINE L1 5747 5816 -338 386 259 118 15 chr3 22680268 22680403 -195356755 - MIR SINE MIR -112 150 2 2363 81 0 0 chr3 22680449 22680756 -195356402 - AluY SINE Alu -4 307 1 1652 162 0 32 chr3 22681836 22682145 -195355013 - AluJb SINE Alu -13 299 1 210 351 0 14 chr3 22683004 22683078 -195354080 + MIR SINE MIR 22 94 -114 228 163 23 0 chr3 22683459 22683502 -195353656 + MIR SINE MIR 78 121 -141 25 0 0 0 chr3 22684044 22684069 -195353089 + AT_rich Low_complexity Low_complexity 1 25 0 785 253 77 40 chr3 22684248 22684623 -195352535 - L2 LINE L2 -114 3199 2811 2285 210 78 30 chr3 22685020 22685662 -195351496 - L1MC4 LINE L1 -894 7148 6476 2235 134 0 3 chr3 22686274 22686573 -195350585 - AluSx SINE Alu -14 298 1 209 154 58 0 chr3 22687116 22687168 -195349990 - L2 LINE L2 -339 2974 2920 505 344 28 31 chr3 22687195 22687483 -195349675 - L2 LINE L2 -485 2829 2543 1781 177 0 3 chr3 22687842 22688130 -195349028 + AluJo SINE Alu 9 295 -17 21 71 0 0 chr3 22689085 22689127 -195348031 + AT_rich Low_complexity Low_complexity 1 42 0 437 303 130 52 chr3 22689147 22689285 -195347873 + L1M4 LINE L1 2121 2286 -3860 2146 153 0 3 chr3 22689285 22689598 -195347560 + AluSx SINE Alu 1 312 0 437 303 130 52 chr3 22689598 22689690 -195347468 + L1M4 LINE L1 2286 2369 -3777 301 130 37 0 chr3 22689706 22689760 -195347398 + L1M4 LINE L1 2962 3017 -3129 572 265 117 0 chr3 22690321 22690483 -195346675 + MIR SINE MIR 79 259 -3 359 207 47 24 chr3 22690987 22691156 -195346002 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 4885 51 8 1 chr3 22691256 22692065 -195345093 - L1PA8 LINE L1 -283 5889 5078 2655 127 27 2 chr3 22692423 22692833 -195344325 - MSTB LTR MaLR -4 422 3 1696 108 9 4 chr3 22693503 22693734 -195343424 + AluSg/x SINE Alu 66 297 -15 1260 155 9 23 chr3 22695549 22695768 -195341390 - AluSq SINE Alu -13 300 85 1502 99 0 0 chr3 22695768 22695950 -195341208 - AluSx SINE Alu -130 182 1 618 39 0 0 chr3 22695950 22696027 -195341131 - AluSq/x SINE Alu -177 136 60 24 0 0 0 chr3 22696103 22696127 -195341031 + AT_rich Low_complexity Low_complexity 1 24 0 2118 147 0 3 chr3 22696190 22696503 -195340655 + AluJb SINE Alu 1 312 0 419 277 55 15 chr3 22697295 22697497 -195339661 + L2 LINE L2 2892 3101 -171 184 247 99 12 chr3 22697555 22697636 -195339522 + L2 LINE L2 3222 3309 -4 197 299 186 21 chr3 22697640 22697737 -195339421 + L2 LINE L2 3160 3272 0 2466 79 3 3 chr3 22697862 22698167 -195338991 + AluSg SINE Alu 1 305 -5 995 165 64 16 chr3 22698169 22698357 -195338801 - AluJb SINE Alu -115 197 1 262 341 15 23 chr3 22698980 22699112 -195338046 + L2 LINE L2 2919 3049 -223 616 266 55 5 chr3 22699368 22699567 -195337591 - MLT1K LTR MaLR -242 346 138 359 291 27 7 chr3 22700023 22700165 -195336993 - MIR SINE MIR -58 150 4 26 30 0 0 chr3 22700641 22700674 -195336484 + AT_rich Low_complexity Low_complexity 1 33 0 746 250 9 51 chr3 22700726 22700942 -195336216 - MER58C DNA MER1_type -8 207 1 2179 122 7 7 chr3 22701148 22701451 -195335707 - AluSx SINE Alu -7 305 3 1421 155 146 30 chr3 22702384 22702720 -195334438 + THE1C LTR MaLR 1 375 0 2215 154 48 24 chr3 22702870 22703215 -195333943 + MSTB LTR MaLR 1 359 -67 2012 147 3 0 chr3 22703215 22703507 -195333651 - AluJb SINE Alu -18 294 2 2215 154 48 24 chr3 22703507 22703577 -195333581 + MSTB LTR MaLR 359 426 0 1900 80 22 36 chr3 22703866 22704140 -195333018 - AluY SINE Alu -41 270 1 269 262 0 0 chr3 22704143 22704204 -195332954 - MER5A DNA MER1_type -1 188 128 859 168 95 10 chr3 22704206 22704421 -195332737 + L1ME1 LINE L1 5238 5468 -698 810 179 0 15 chr3 22704421 22704555 -195332603 - FLAM_C SINE Alu -11 132 1 2406 236 72 5 chr3 22704578 22705204 -195331954 + L1ME1 LINE L1 5479 6146 -20 2166 123 0 22 chr3 22705204 22705522 -195331636 - AluSx SINE Alu -1 311 1 249 265 48 0 chr3 22705580 22705663 -195331495 - MER5A DNA MER1_type -53 136 50 269 50 0 25 chr3 22705673 22705713 -195331445 + (TCCCC)n Simple_repeat Simple_repeat 4 42 0 235 0 86 0 chr3 22705714 22705749 -195331409 + CT-rich Low_complexity Low_complexity 4 41 0 1787 153 12 40 chr3 22705896 22706217 -195330941 + AluJo SINE Alu 1 312 0 1436 130 60 15 chr3 22706220 22706534 -195330624 + MLT2C2 LTR ERVL 25 366 -48 431 167 11 0 chr3 22706554 22706644 -195330514 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 278 77 0 0 chr3 22706644 22706683 -195330475 + MLT2C2 LTR ERVL 426 464 0 366 269 37 9 chr3 22706730 22706838 -195330320 + MLT1K LTR MaLR 2 112 -476 730 258 135 16 chr3 22706898 22707302 -195329856 + MLT1K LTR MaLR 85 570 -18 504 246 75 53 chr3 22707593 22707780 -195329378 - L1ME LINE L1 -612 5552 5362 312 256 0 0 chr3 22707959 22708037 -195329121 - MIR SINE MIR -96 166 89 692 321 172 20 chr3 22708148 22708647 -195328511 - MLT1L LTR MaLR -7 608 34 269 156 0 94 chr3 22708691 22708755 -195328403 + L1MC/D LINE L1 5411 5468 -2527 2084 111 7 26 chr3 22708755 22709062 -195328096 - AluSx SINE Alu -9 303 3 209 348 143 12 chr3 22709269 22709430 -195327728 + L2 LINE L2 2450 2631 -683 225 0 0 0 chr3 22709677 22709702 -195327456 + (A)n Simple_repeat Simple_repeat 1 25 0 331 171 0 51 chr3 22710016 22710133 -195327025 + G-rich Low_complexity Low_complexity 1 111 0 185 250 17 0 chr3 22710448 22710508 -195326650 + L2 LINE L2 2917 2977 -295 711 265 93 63 chr3 22710643 22711137 -195326021 + L2 LINE L2 2804 3312 -1 189 291 58 29 chr3 22711137 22711240 -195325918 + MIR3 SINE MIR 98 203 -5 207 0 0 0 chr3 22711599 22711622 -195325536 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 372 22 0 0 chr3 22711621 22711666 -195325492 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 109 0 0 chr3 22711783 22711829 -195325329 + (CA)n Simple_repeat Simple_repeat 1 46 0 395 109 11 71 chr3 22712372 22712555 -195324603 + (TGGGGG)n Simple_repeat Simple_repeat 6 177 0 188 259 37 0 chr3 22712849 22712903 -195324255 - MIR SINE MIR -63 145 90 473 180 22 93 chr3 22712972 22713111 -195324047 - MIR SINE MIR -105 157 29 235 316 0 26 chr3 22713126 22713202 -195323956 - L3 LINE CR1 -539 1038 965 250 296 70 15 chr3 22713546 22713705 -195323453 - MIR SINE MIR -54 208 35 341 255 46 27 chr3 22713783 22713918 -195323240 + MIR SINE MIR 9 144 -67 278 337 21 0 chr3 22714498 22714593 -195322565 + L2 LINE L2 3164 3260 -12 1665 142 42 55 chr3 22715298 22715608 -195321550 + AluJo SINE Alu 5 310 -2 687 256 66 22 chr3 22715764 22716149 -195321009 + MLT1K LTR MaLR 136 588 0 281 235 71 12 chr3 22716594 22716679 -195320479 + MIR SINE MIR 33 122 -86 215 253 0 38 chr3 22716744 22716823 -195320335 - MIR SINE MIR -139 123 48 208 256 35 0 chr3 22717425 22717511 -195319647 + (GGGTG)n Simple_repeat Simple_repeat 3 91 0 * 210 192 0 39 chr3 22717464 22717516 -195319642 + G-rich Low_complexity Low_complexity 3 52 0 478 204 28 85 chr3 22717702 22717878 -195319280 + MER104 DNA Tc2 9 174 -6 652 253 97 4 chr3 22717882 22718244 -195318914 - L2 LINE L2 -159 3154 2760 1006 229 110 14 chr3 22719009 22719301 -195317857 + MLT1H LTR MaLR 1 320 -229 470 336 61 39 chr3 22720216 22720940 -195316218 - L2 LINE L2 -29 3284 2550 1843 151 0 0 chr3 22721389 22721641 -195315517 - AluJb SINE Alu -60 252 1 340 156 141 0 chr3 22721644 22721708 -195315450 - MER5A DNA MER1_type -116 73 1 285 236 40 92 chr3 22721822 22721996 -195315162 + L1MEd LINE L1 1046 1210 -4909 404 274 80 47 chr3 22722198 22722410 -195314748 + MIR SINE MIR 34 252 -10 337 216 202 0 chr3 22722736 22722853 -195314305 + MIR SINE MIR 17 153 -58 443 266 79 38 chr3 22723222 22723512 -195313646 - L1MEd LINE L1 -5043 1076 775 227 200 15 15 chr3 22723619 22723684 -195313474 - L1MEd LINE L1 -5460 659 595 2261 121 0 6 chr3 22724467 22724780 -195312378 + AluSx SINE Alu 1 311 -1 2412 68 3 3 chr3 22724782 22725074 -195312084 + AluY SINE Alu 3 294 -17 362 353 137 29 chr3 22725388 22725526 -195311632 - L1M4 LINE L1 -1082 5064 4942 1686 183 0 45 chr3 22725526 22725837 -195311321 + AluJo SINE Alu 1 297 -15 362 353 137 29 chr3 22725837 22725976 -195311182 - L1M4 LINE L1 -1204 4942 4757 381 258 11 0 chr3 22726415 22726508 -195310650 + MIR SINE MIR 81 174 -88 415 239 28 18 chr3 22726626 22726735 -195310423 + MIR SINE MIR 38 147 -115 261 217 48 12 chr3 22726850 22726933 -195310225 - MER20B DNA MER1_type -605 178 93 268 143 61 0 chr3 22727323 22727372 -195309786 - MIR SINE MIR -98 164 113 369 267 89 30 chr3 22727733 22727898 -195309260 - MIR3 SINE MIR -29 233 39 267 234 57 65 chr3 22728183 22728307 -195308851 + MIR SINE MIR 108 230 -32 375 296 195 19 chr3 22728352 22728491 -195308667 - L2 LINE L2 0 3313 3200 189 74 0 0 chr3 22728491 22728518 -195308640 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 375 296 195 19 chr3 22728518 22728635 -195308523 - L2 LINE L2 -113 3200 3012 199 355 28 14 chr3 22730968 22731100 -195306058 - MIR SINE MIR -72 136 49 2023 142 0 4 chr3 22731607 22731928 -195305230 - AluJb SINE Alu 0 324 5 2274 111 10 0 chr3 22731938 22732244 -195304914 - AluSg SINE Alu -1 309 1 741 98 80 0 chr3 22732250 22732362 -195304796 - 5S rRNA rRNA 0 121 1 707 180 0 0 chr3 22732365 22732487 -195304671 - FLAM_C SINE Alu -16 127 6 192 311 0 16 chr3 22732488 22732549 -195304609 - MER5A DNA MER1_type -114 75 16 705 179 87 0 chr3 22732573 22732746 -195304412 + MER5A DNA MER1_type 2 189 0 334 172 118 21 chr3 22732761 22732854 -195304304 - MER5B DNA MER1_type -5 173 72 268 82 20 20 chr3 22732870 22732919 -195304239 + (TTC)n Simple_repeat Simple_repeat 1 49 0 412 326 28 22 chr3 22733429 22733610 -195303548 + MIR SINE MIR 7 188 -74 885 279 134 53 chr3 22734081 22734716 -195302442 - MER115 DNA AcHobo -6 687 2 2139 112 3 0 chr3 22734784 22735109 -195302049 - AluSp SINE Alu 0 313 1 318 320 20 0 chr3 22735207 22735307 -195301851 - MIR SINE MIR -10 252 151 329 301 0 11 chr3 22735876 22735969 -195301189 + MIR SINE MIR 56 147 -61 1124 126 0 88 chr3 22736061 22736204 -195300954 - L1MA4 LINE L1 0 6300 6185 2021 118 35 0 chr3 22736204 22736492 -195300666 + AluSx SINE Alu 1 298 -14 1124 126 0 88 chr3 22736492 22736587 -195300571 - L1MA4 LINE L1 -115 6185 6083 2009 142 3 6 chr3 22736640 22736951 -195300207 + AluSq SINE Alu 2 311 -2 210 118 0 0 chr3 22736951 22736985 -195300173 + (GGAGAA)n Simple_repeat Simple_repeat 1 34 0 621 270 93 17 chr3 22736985 22737274 -195299884 - MER113 DNA MER1_type? -149 372 62 1934 201 66 9 chr3 22737277 22737715 -195299443 - MLT1C LTR MaLR -4 463 1 2167 117 0 0 chr3 22738056 22738356 -195298802 + AluSx SINE Alu 1 300 -12 263 320 103 26 chr3 22738564 22738758 -195298400 + L2 LINE L2 2852 3060 -212 495 244 106 19 chr3 22738805 22738965 -195298193 - MER5B DNA MER1_type -3 175 2 2268 108 0 0 chr3 22738983 22739280 -195297878 + AluSx SINE Alu 1 297 -15 463 258 94 103 chr3 22739296 22739450 -195297708 + MER46C DNA MER2_type 10 164 -174 790 161 0 29 chr3 22739450 22739587 -195297571 - FLAM_C SINE Alu 0 133 1 463 258 94 103 chr3 22739587 22739761 -195297397 + MER46C DNA MER2_type 164 335 -3 489 328 74 4 chr3 22739776 22740005 -195297153 - MIR SINE MIR -1 261 17 252 256 207 0 chr3 22740514 22740596 -195296562 + MLT1L LTR MaLR 71 169 -380 435 75 0 0 chr3 22740640 22740693 -195296465 - AluSq SINE Alu -138 175 123 379 271 29 24 chr3 22740731 22740901 -195296257 + MLT1H LTR MaLR 378 548 -1 248 241 190 0 chr3 22740914 22740993 -195296165 + MIR SINE MIR 162 255 -7 395 312 68 30 chr3 22741247 22741510 -195295648 - L2 LINE L2 -1189 2125 1853 264 342 17 17 chr3 22741801 22741918 -195295240 + MIR SINE MIR 67 183 -79 2122 113 3 3 chr3 22742034 22742336 -195294822 + AluSg SINE Alu 1 302 -8 410 271 256 0 chr3 22742485 22742618 -195294540 - MIR SINE MIR -65 197 31 2135 125 0 7 chr3 22742741 22743045 -195294113 - AluSx SINE Alu -10 302 1 193 262 75 47 chr3 22744486 22744593 -195292565 + L3b LINE CR1 1349 1458 -125 209 283 19 0 chr3 22745111 22745164 -195291994 + MIR SINE MIR 93 146 -62 381 252 19 9 chr3 22745379 22745486 -195291672 + MLT1L LTR MaLR 167 274 -341 258 227 0 0 chr3 22745577 22745652 -195291506 + (TG)n Simple_repeat Simple_repeat 2 76 0 296 289 67 10 chr3 22745664 22745768 -195291390 - L2 LINE L2 -438 2876 2767 227 362 73 37 chr3 22745956 22746174 -195290984 - L3 LINE CR1 -132 1445 1220 806 219 92 22 chr3 22746691 22746919 -195290239 + MIR SINE MIR 13 256 -6 1636 188 0 10 chr3 22746920 22747218 -195289940 - AluJo SINE Alu -17 295 1 765 153 40 0 chr3 22747218 22747342 -195289816 - AluJo SINE Alu -177 135 7 1894 136 3 11 chr3 22747543 22747830 -195289328 + AluJb SINE Alu 6 290 -22 567 262 8 2 chr3 22748438 22748593 -195288565 - MIR SINE MIR -61 147 34 208 289 111 52 chr3 22749173 22749308 -195287850 + MIR SINE MIR 84 226 -36 279 54 0 0 chr3 22749373 22749410 -195287748 + (TG)n Simple_repeat Simple_repeat 1 37 0 382 284 91 41 chr3 22749976 22750198 -195286960 + MIR SINE MIR 13 256 -6 294 327 30 0 chr3 22750652 22750753 -195286405 + MIR3 SINE MIR 101 204 -4 302 96 0 19 chr3 22753224 22753276 -195283882 + (CA)n Simple_repeat Simple_repeat 2 52 0 192 321 28 37 chr3 22753644 22753753 -195283405 + MIR3 SINE MIR 81 188 -20 232 307 145 11 chr3 22753843 22754022 -195283136 - L3 LINE CR1 -199 1378 1176 1319 152 74 16 chr3 22754463 22754707 -195282451 + AluJo SINE Alu 25 282 -30 251 307 0 0 chr3 22754723 22754798 -195282360 + Charlie8 DNA MER1_type 118 192 -2225 285 333 0 0 chr3 22756445 22756520 -195280638 - MIR SINE MIR -65 143 69 368 316 170 19 chr3 22756916 22757393 -195279765 + L2 LINE L2 2709 3271 -1 396 292 11 0 chr3 22758290 22758379 -195278779 - MIR SINE MIR -56 152 63 364 333 33 22 chr3 22758923 22759103 -195278055 + L2 LINE L2 2882 3063 -209 364 299 163 45 chr3 22759845 22760162 -195276996 + L1M4 LINE L1 5102 5428 -743 321 364 45 45 chr3 22761453 22761739 -195275419 + L2 LINE L2 2986 3271 -1 202 216 0 59 chr3 22761774 22761825 -195275333 + MIR3 SINE MIR 113 160 -48 261 258 192 8 chr3 22762845 22762965 -195274193 + MIR SINE MIR 65 206 -56 2099 135 0 0 chr3 22763085 22763382 -195273776 + AluSx SINE Alu 1 297 -15 453 276 105 17 chr3 22763674 22763855 -195273303 + MIR SINE MIR 12 208 -54 734 169 12 41 chr3 22763862 22764034 -195273124 + L1MB3 LINE L1 5982 6148 -35 245 330 179 9 chr3 22764268 22764374 -195272784 + MIR SINE MIR 30 153 -55 336 238 0 59 chr3 22766899 22767000 -195270158 + MIR3 SINE MIR 99 193 -15 207 0 0 0 chr3 22767264 22767287 -195269871 + (A)n Simple_repeat Simple_repeat 1 23 0 218 271 0 57 chr3 22769698 22769768 -195267390 + L2 LINE L2 3248 3313 0 278 293 181 33 chr3 22770780 22770995 -195266163 + MIR SINE MIR 7 253 -9 491 252 103 28 chr3 22771970 22772125 -195265033 + MIR SINE MIR 5 171 -91 2285 91 7 10 chr3 22772125 22772433 -195264725 - AluSx SINE Alu 0 312 6 491 252 103 28 chr3 22772433 22772527 -195264631 + MIR SINE MIR 171 257 -5 601 227 88 31 chr3 22772720 22772928 -195264230 + MIR SINE MIR 31 248 -14 210 259 176 0 chr3 22773382 22773467 -195263691 - MIR SINE MIR -123 139 40 217 283 11 54 chr3 22773589 22773681 -195263477 - MIR3 SINE MIR -31 177 90 728 272 31 10 chr3 22773911 22774106 -195263052 - MIR SINE MIR -5 257 59 328 364 32 13 chr3 22774194 22774348 -195262810 + MIR3 SINE MIR 38 194 -14 182 152 0 0 chr3 22774435 22774468 -195262690 + MIR SINE MIR 114 146 -62 609 312 45 5 chr3 22775029 22775250 -195261908 - MIR SINE MIR -5 257 28 608 247 82 76 chr3 22775311 22775713 -195261445 + MER4C LTR ERV1 1 307 -158 1831 156 14 3 chr3 22775713 22776002 -195261156 - AluJb SINE Alu -20 292 1 608 247 82 76 chr3 22776002 22776162 -195260996 + MER4C LTR ERV1 307 465 0 285 296 112 24 chr3 22776660 22776785 -195260373 - MIR3 SINE MIR -63 145 10 690 289 31 4 chr3 22777002 22777227 -195259931 + MIR SINE MIR 3 229 -33 216 209 0 0 chr3 22777316 22777359 -195259799 - MIR SINE MIR -69 139 97 1051 275 39 46 chr3 22777888 22778277 -195258881 + L2 LINE L2 2926 3311 -2 847 163 30 48 chr3 22778360 22778526 -195258632 + FRAM SINE Alu 4 166 0 327 219 270 15 chr3 22778540 22778677 -195258481 - MIR SINE MIR -6 256 85 316 192 14 27 chr3 22778658 22778731 -195258427 + MIR SINE MIR 85 150 -58 * 183 320 247 0 chr3 22779746 22779843 -195257315 - MER5A DNA MER1_type 0 189 69 460 235 117 66 chr3 22780028 22780224 -195256934 - MER63A DNA MER1_type -2 208 3 239 357 107 9 chr3 22780514 22780626 -195256532 + MIR3 SINE MIR 15 137 -71 345 240 141 5 chr3 22780631 22780763 -195256395 + MIR SINE MIR 3 145 -63 180 394 21 11 chr3 22780823 22780917 -195256241 + MIR SINE MIR 49 143 -65 264 160 60 0 chr3 22781669 22781719 -195255439 + MIR SINE MIR 111 163 -99 21 0 0 0 chr3 22781835 22781856 -195255302 + AT_rich Low_complexity Low_complexity 1 21 0 450 248 124 0 chr3 22781893 22782014 -195255144 + L2 LINE L2 3178 3313 0 442 274 117 20 chr3 22782226 22782423 -195254735 - MIR SINE MIR -46 216 1 649 296 71 10 chr3 22783259 22783567 -195253591 + L1MC4a LINE L1 5613 5939 -1869 314 319 145 6 chr3 22784130 22784296 -195252862 + L2 LINE L2 2567 2755 -559 946 265 137 32 chr3 22784436 22784874 -195252284 + L2 LINE L2 2830 3313 0 274 299 0 0 chr3 22784872 22784949 -195252209 - MIR SINE MIR -112 150 74 * 211 212 82 59 chr3 22785948 22786033 -195251125 + MIR SINE MIR 42 128 -134 227 278 19 74 chr3 22786095 22786203 -195250955 - MIR SINE MIR -46 162 57 350 298 133 11 chr3 22786904 22787092 -195250066 + L2 LINE L2 2828 3038 -234 200 220 60 0 chr3 22787084 22787134 -195250024 - MIR SINE MIR -60 148 96 * 555 297 65 12 chr3 22787287 22787533 -195249625 - L2 LINE L2 -631 2683 2425 2214 101 0 0 chr3 22788368 22788682 -195248476 + AluSc SINE Alu 1 314 0 321 279 143 14 chr3 22788726 22788866 -195248292 - MIR SINE MIR -78 184 27 1075 268 80 31 chr3 22789716 22790173 -195246985 + MLT1H LTR MaLR 28 549 0 555 282 0 8 chr3 22790311 22790442 -195246716 - MIR SINE MIR -83 179 50 235 269 0 15 chr3 22790976 22791043 -195246115 + (TGGA)n Simple_repeat Simple_repeat 2 67 0 720 203 8 8 chr3 22791066 22791316 -195245842 + (TGGA)n Simple_repeat Simple_repeat 1 250 0 301 180 22 0 chr3 22791348 22791437 -195245721 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 561 336 94 8 chr3 22791598 22791833 -195245325 - MIR SINE MIR -6 256 2 2573 170 43 2 chr3 22791849 22792291 -195244867 - L1PA16 LINE L1 -3 6163 5704 217 234 0 0 chr3 22792485 22792532 -195244626 + L2 LINE L2 3267 3313 0 2515 58 3 0 chr3 22792968 22793277 -195243881 - AluY SINE Alu -1 310 1 358 273 79 42 chr3 22794040 22794256 -195242902 - MER113 DNA MER1_type? -295 226 3 235 225 14 42 chr3 22794266 22794337 -195242821 - MIR SINE MIR -113 149 81 337 204 36 80 chr3 22795510 22795647 -195241511 + LTR33 LTR ERVL 17 147 -374 236 234 0 0 chr3 22796041 22796091 -195241067 + MIR SINE MIR 108 152 -56 462 259 89 51 chr3 22796149 22796385 -195240773 + MER102a DNA MER1_type 77 321 -9 479 309 24 24 chr3 22796387 22796552 -195240606 + L2 LINE L2 3118 3282 -31 255 349 83 23 chr3 22797177 22797395 -195239763 - L3 LINE CR1 -138 1439 1209 515 320 95 16 chr3 22797673 22798061 -195239097 + L2 LINE L2 2533 2951 -363 611 286 25 12 chr3 22798178 22798339 -195238819 + MIR SINE MIR 85 247 -15 185 262 71 85 chr3 22798407 22798548 -195238610 - MIR SINE MIR -96 166 28 214 308 58 64 chr3 22799065 22799221 -195237937 - MIR SINE MIR -26 236 82 422 247 201 31 chr3 22799991 22800185 -195236973 + MIR SINE MIR 30 256 -6 225 225 42 28 chr3 22800228 22800299 -195236859 + AluSc SINE Alu 89 160 -139 239 0 32 0 chr3 22800442 22800473 -195236685 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1364 178 19 45 chr3 22800499 22800808 -195236350 + L1MA8 LINE L1 5987 6287 -4 1595 116 0 0 chr3 22800811 22801027 -195236131 + AluJb SINE Alu 85 300 -12 323 316 49 85 chr3 22801054 22801301 -195235857 - MIR SINE MIR -14 248 11 283 255 113 0 chr3 22801563 22801669 -195235489 + MER117 DNA MER1_type 34 151 -46 405 0 0 0 chr3 22801703 22801748 -195235410 + (A)n Simple_repeat Simple_repeat 1 45 0 1582 203 0 10 chr3 22801785 22802095 -195235063 + AluJo SINE Alu 5 311 -1 347 252 58 29 chr3 22803022 22803125 -195234033 - MIR SINE MIR -67 141 36 266 261 189 9 chr3 22803771 22803882 -195233276 - L2 LINE L2 -31 3282 3152 190 161 0 0 chr3 22803909 22803940 -195233218 - L2 LINE L2 -260 3053 3023 405 224 296 31 chr3 22803941 22804137 -195233021 - MIR SINE MIR -1 261 14 2126 120 3 7 chr3 22804456 22804765 -195232393 - AluSx SINE Alu -4 308 1 256 310 14 0 chr3 22806284 22806355 -195230803 + MIR SINE MIR 80 151 -111 207 292 87 68 chr3 22806695 22806914 -195230244 + L2 LINE L2 2896 3118 -154 295 191 79 56 chr3 22807291 22807380 -195229778 - MIR3 SINE MIR -4 204 114 202 167 48 0 chr3 22807460 22807502 -195229656 - MIR SINE MIR -63 145 102 180 282 26 64 chr3 22808370 22808448 -195228710 + MIR SINE MIR 79 153 -109 454 286 28 21 chr3 22808510 22808672 -195228486 + MER5A DNA MER1_type 21 172 -6 424 230 119 16 chr3 22808976 22809102 -195228056 - MIR SINE MIR -117 145 7 582 260 19 13 chr3 22809706 22809860 -195227298 + MIR SINE MIR 106 260 -2 471 285 183 11 chr3 22810832 22811018 -195226140 + MIR SINE MIR 31 248 -14 304 355 26 33 chr3 22811903 22812055 -195225103 - MIR SINE MIR -61 201 51 237 269 161 46 chr3 22812082 22812212 -195224946 - MIR3 SINE MIR -27 181 37 298 209 9 109 chr3 22812984 22813094 -195224064 + MIR SINE MIR 47 145 -63 202 313 62 39 chr3 22813733 22813861 -195223297 + L2 LINE L2 2839 2969 -303 294 176 18 0 chr3 22814559 22814624 -195222534 - MIR SINE MIR -63 145 89 292 273 78 0 chr3 22814707 22814784 -195222374 + MIR3 SINE MIR 81 163 -45 225 296 70 0 chr3 22814854 22814925 -195222233 + L2 LINE L2 3238 3313 0 217 288 30 12 chr3 22815886 22815993 -195221165 - MIR SINE MIR -43 165 55 321 268 82 22 chr3 22816458 22816601 -195220557 + MIR SINE MIR 38 188 -60 362 278 49 94 chr3 22816724 22816969 -195220189 - MIR SINE MIR -12 250 17 346 325 110 51 chr3 22817212 22817357 -195219801 + L1MB2 LINE L1 5542 5677 -2131 710 216 0 0 chr3 22817357 22817496 -195219662 + L1MB2 LINE L1 6031 6169 -2 1886 146 24 0 chr3 22817500 22817794 -195219364 + AluJb SINE Alu 1 301 -11 346 325 110 51 chr3 22817794 22817880 -195219278 + L1MB2 LINE L1 5679 5792 -2016 1454 109 0 0 chr3 22817938 22818130 -195219028 - AluSx SINE Alu -117 195 4 333 347 20 14 chr3 22818640 22818787 -195218371 - MIR SINE MIR -101 161 14 208 217 113 82 chr3 22818878 22819022 -195218136 - MIR3 SINE MIR -68 140 2 614 305 94 14 chr3 22819387 22819600 -195217558 + MIR SINE MIR 33 262 0 675 235 53 114 chr3 22820367 22820532 -195216626 + L1MC4 LINE L1 7559 7732 -310 2365 70 0 3 chr3 22820532 22820834 -195216324 - AluY SINE Alu -10 301 1 675 235 53 114 chr3 22820834 22821054 -195216104 + L1MC4 LINE L1 7732 8010 -32 798 155 8 0 chr3 22821098 22821227 -195215931 - AluJo SINE Alu -176 136 7 1226 163 0 5 chr3 22821227 22821436 -195215722 + AluJb SINE Alu 89 296 -16 337 322 0 22 chr3 22822027 22822210 -195214948 + (CA)n Simple_repeat Simple_repeat 1 179 0 383 245 57 9 chr3 22823052 22823158 -195214000 - L2 LINE L2 -3 3310 3200 227 206 65 43 chr3 22823198 22823290 -195213868 + MER117 DNA MER1_type 88 181 -16 1722 159 10 23 chr3 22823464 22823765 -195213393 + AluJo SINE Alu 11 307 -5 880 295 90 30 chr3 22823854 22824288 -195212870 + MLT1K LTR MaLR 91 550 -38 27 0 0 0 chr3 22824328 22824355 -195212803 + AT_rich Low_complexity Low_complexity 1 27 0 187 305 122 53 chr3 22824399 22824530 -195212628 + MIR3 SINE MIR 55 194 -14 758 247 23 0 chr3 22824614 22824788 -195212370 - MER5A DNA MER1_type -6 183 6 349 167 157 46 chr3 22825371 22825479 -195211679 + MIR SINE MIR 77 196 -66 391 250 11 0 chr3 22825542 22825630 -195211528 + MER5A DNA MER1_type 9 97 -92 1529 150 75 4 chr3 22825630 22825884 -195211274 - AluJb SINE Alu -38 274 3 394 264 132 14 chr3 22826352 22826496 -195210662 + L2 LINE L2 3140 3300 -13 192 40 0 0 chr3 22826498 22826523 -195210635 + (TGGA)n Simple_repeat Simple_repeat 3 27 0 229 236 0 18 chr3 22826804 22826859 -195210299 - L2 LINE L2 -17 3296 3243 * 395 319 118 12 chr3 22826848 22827161 -195209997 - L2 LINE L2 -219 3053 2718 2103 106 31 0 chr3 22828086 22828378 -195208780 - AluSg SINE Alu -9 301 1 224 197 15 136 chr3 22828424 22828490 -195208668 + MIR3 SINE MIR 109 166 -42 253 284 102 0 chr3 22828636 22828724 -195208434 + L2 LINE L2 3162 3258 -14 2442 67 0 6 chr3 22829176 22829488 -195207670 + AluY SINE Alu 1 310 -1 374 338 50 6 chr3 22829515 22829675 -195207483 + L1M4 LINE L1 2876 3042 -3104 2054 106 0 0 chr3 22829678 22829952 -195207206 + AluSx SINE Alu 30 303 -9 2165 186 61 26 chr3 22830088 22830478 -195206680 + L1ME2 LINE L1 5574 5992 -172 1678 170 20 13 chr3 22830478 22830784 -195206374 + AluJb SINE Alu 1 308 -4 2165 186 61 26 chr3 22830784 22830963 -195206195 + L1ME2 LINE L1 5992 6163 -1 1751 137 0 0 chr3 22830983 22831239 -195205919 + AluJb SINE Alu 50 305 -7 341 242 14 67 chr3 22831239 22831379 -195205779 - MER5A DNA MER1_type -44 139 9 746 136 27 0 chr3 22831979 22832089 -195205069 + FLAM_C SINE Alu 6 118 -25 184 335 84 61 chr3 22832115 22832458 -195204700 + L2 LINE L2 2836 3186 -86 227 318 37 72 chr3 22833556 22833757 -195203401 - MIR SINE MIR -66 196 3 * 304 198 176 0 chr3 22833757 22833838 -195203320 - MIR3 SINE MIR -60 148 52 226 276 0 20 chr3 22834912 22835010 -195202148 + (CA)n Simple_repeat Simple_repeat 1 96 0 423 0 0 0 chr3 22835159 22835206 -195201952 + (CA)n Simple_repeat Simple_repeat 1 47 0 38 0 0 0 chr3 22835715 22835753 -195201405 + GC_rich Low_complexity Low_complexity 1 38 0 228 200 0 0 chr3 22835776 22835826 -195201332 + (CA)n Simple_repeat Simple_repeat 2 51 0 708 277 55 18 chr3 22836178 22836398 -195200760 + MIR SINE MIR 34 261 -1 204 40 0 0 chr3 22836544 22836569 -195200589 + (TC)n Simple_repeat Simple_repeat 2 26 0 2309 75 23 0 chr3 22836639 22836945 -195200213 + AluSq SINE Alu 1 313 0 335 260 60 10 chr3 22837851 22837951 -195199207 + L2 LINE L2 3201 3305 -8 2227 100 3 0 chr3 22837965 22838265 -195198893 - AluSp SINE Alu -12 301 1 973 267 4 4 chr3 22838266 22838506 -195198652 - MIR SINE MIR -5 257 18 372 247 79 18 chr3 22838693 22838857 -195198301 + MIR SINE MIR 15 183 -63 338 281 30 30 chr3 22838861 22838996 -195198162 + MER102a DNA MER1_type 2 136 -194 1112 188 0 20 chr3 22838996 22839220 -195197938 + AluJb SINE Alu 85 304 0 511 261 59 15 chr3 22839220 22839423 -195197735 + MER102a DNA MER1_type 119 330 0 577 332 5 5 chr3 22840114 22840304 -195196854 + MIR SINE MIR 45 234 -28 180 222 37 49 chr3 22840354 22840435 -195196723 + L2 LINE L2 2910 2989 -283 684 194 14 58 chr3 22840902 22841041 -195196117 - FLAM_A SINE Alu 0 133 1 574 241 85 67 chr3 22841044 22841408 -195195750 + L1ME2 LINE L1 5579 5943 -221 204 171 37 0 chr3 22841908 22841990 -195195168 + (TCTCTG)n Simple_repeat Simple_repeat 2 86 0 615 273 43 0 chr3 22842917 22843104 -195194054 + MIR SINE MIR 49 243 -19 515 301 108 34 chr3 22844741 22844815 -195192343 + L1MEd LINE L1 748 815 -1675 1758 118 0 87 chr3 22844815 22845147 -195192011 + AluSq SINE Alu 6 308 -5 515 301 108 34 chr3 22845147 22845168 -195191990 + L1MEd LINE L1 815 833 -1657 1214 135 101 10 chr3 22845168 22845376 -195191782 + MER30 DNA MER1_type 4 230 0 515 301 108 34 chr3 22845376 22845442 -195191716 + L1MEd LINE L1 833 893 -1597 216 0 0 0 chr3 22845442 22845466 -195191692 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 515 301 108 34 chr3 22845466 22846033 -195191125 + L1MEd LINE L1 893 1628 -862 1453 171 131 17 chr3 22846400 22846751 -195190407 + L1MB7 LINE L1 5778 6168 -16 249 292 75 8 chr3 22846787 22846907 -195190251 + L1MC4 LINE L1 7609 7736 -306 324 241 319 7 chr3 22847579 22847720 -195189438 - MIR SINE MIR -56 206 22 1836 183 70 30 chr3 22848033 22848558 -195188600 - Charlie1a DNA MER1_type 0 1455 910 * 2499 217 99 10 chr3 22848553 22849028 -195188130 - Charlie1a DNA MER1_type -1976 785 229 1705 77 81 8 chr3 22849028 22849276 -195187882 - AluY SINE Alu -45 266 1 2499 217 99 10 chr3 22849276 22849488 -195187670 - Charlie1a DNA MER1_type -2532 229 37 1888 94 0 0 chr3 22849527 22849771 -195187387 - AluSg SINE Alu -66 244 1 27 49 0 0 chr3 22850143 22850184 -195186974 + AT_rich Low_complexity Low_complexity 1 41 0 660 158 298 0 chr3 22850188 22850346 -195186812 - MER2 DNA MER2_type -140 205 1 883 250 14 0 chr3 22851756 22851964 -195185194 - MIR SINE MIR -1 261 51 616 305 51 0 chr3 22852466 22852663 -195184495 - MLT1K LTR MaLR -92 496 290 280 281 135 0 chr3 22852890 22852986 -195184172 + MIR3 SINE MIR 48 156 -52 296 323 89 0 chr3 22853290 22853414 -195183744 - MIR SINE MIR -12 250 116 943 221 23 5 chr3 22853455 22853672 -195183486 - MIR SINE MIR -12 250 30 398 211 9 0 chr3 22854470 22854579 -195182579 + GA-rich Low_complexity Low_complexity 2 111 0 898 95 0 0 chr3 22854971 22855097 -195182061 - L1MC/D LINE L1 -668 5665 5540 975 254 29 32 chr3 22855348 22855402 -195181756 - MER113 DNA MER1_type? -155 366 313 5610 126 51 5 chr3 22855402 22855489 -195181669 - L1MC1 LINE L1 -1 6332 6250 2882 129 19 2 chr3 22855489 22855908 -195181250 + MSTA LTR MaLR 1 426 -2 5610 126 51 5 chr3 22855908 22856664 -195180494 - L1MC1 LINE L1 -83 6250 5450 975 254 29 32 chr3 22856664 22856924 -195180234 - MER113 DNA MER1_type? -208 313 53 312 297 73 6 chr3 22857549 22857714 -195179444 + LTR16A1 LTR ERVL 193 368 -89 362 286 108 31 chr3 22857788 22858075 -195179083 - L2 LINE L2 -999 2315 2007 507 226 76 45 chr3 22859042 22859382 -195177776 - LTR23 LTR ERV1 -59 378 4 1481 240 66 33 chr3 22859418 22859905 -195177253 - MER90 LTR ERV1 -72 503 1 301 167 106 0 chr3 22860067 22860133 -195177025 - L1ME3 LINE L1 -66 6096 6024 259 289 133 15 chr3 22860178 22860313 -195176845 - L1ME3 LINE L1 -225 5941 5791 667 283 11 0 chr3 22860474 22860658 -195176500 + L1MC5 LINE L1 5053 5238 -908 1872 140 10 16 chr3 22860787 22861095 -195176063 + AluJo SINE Alu 1 306 -6 339 313 9 9 chr3 22861163 22861275 -195175883 - MIR SINE MIR -71 191 80 227 315 67 0 chr3 22861956 22862045 -195175113 + MIR SINE MIR 21 115 -147 227 309 209 0 chr3 22862196 22862306 -195174852 - L2 LINE L2 -2 3270 3138 213 350 111 20 chr3 22862726 22863023 -195174135 - L2 LINE L2 -29 3243 2920 894 284 108 27 chr3 22863221 22863664 -195173494 + L2 LINE L2 2830 3308 -5 323 346 44 6 chr3 22864258 22864440 -195172718 + L1MC5 LINE L1 5637 5825 -1983 256 312 46 28 chr3 22864768 22864877 -195172281 + MIR SINE MIR 35 145 -63 345 281 52 0 chr3 22864909 22865005 -195172153 + MER91C DNA MER1_type 38 138 -2 27 0 0 0 chr3 22865668 22865695 -195171463 + AT_rich Low_complexity Low_complexity 1 27 0 277 269 214 55 chr3 22866358 22866540 -195170618 - L2 LINE L2 0 3313 3103 1077 264 44 70 chr3 22866590 22867135 -195170023 + L1MC5 LINE L1 6681 7211 -750 655 250 124 59 chr3 22867305 22867749 -195169409 + L1MC5 LINE L1 7304 7776 -185 24 0 0 0 chr3 22867795 22867819 -195169339 + AT_rich Low_complexity Low_complexity 1 24 0 196 281 72 50 chr3 22867819 22867958 -195169200 - L2 LINE L2 -246 3067 2926 210 323 177 15 chr3 22868166 22868296 -195168862 - MER5B DNA MER1_type -27 151 1 228 252 24 41 chr3 22868559 22868682 -195168476 + C-rich Low_complexity Low_complexity 3 123 0 360 202 90 0 chr3 22868963 22869052 -195168106 + MIR3 SINE MIR 82 178 -30 288 0 0 0 chr3 22869174 22869206 -195167952 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 201 231 39 0 chr3 22869332 22869384 -195167774 - MIR SINE MIR -119 89 36 867 258 186 16 chr3 22869871 22870481 -195166677 - L2 LINE L2 -19 3294 2579 746 229 43 11 chr3 22870522 22870710 -195166448 - MIR SINE MIR -63 199 6 367 257 18 26 chr3 22871015 22871128 -195166030 + MIR SINE MIR 34 145 -117 258 154 0 108 chr3 22871467 22871532 -195165626 - MIR3 SINE MIR -41 167 110 286 250 60 12 chr3 22871778 22871862 -195165296 + L2 LINE L2 3184 3271 -1 626 224 202 22 chr3 22871913 22872361 -195164797 + L2 LINE L2 2736 3263 -50 196 307 80 0 chr3 22872370 22872458 -195164700 - L2 LINE L2 -35 3237 3143 536 240 74 29 chr3 22872513 22872688 -195164470 - MIR SINE MIR -58 204 22 252 0 0 0 chr3 22873632 22873660 -195163498 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1965 146 0 7 chr3 22873671 22873980 -195163178 + AluJb SINE Alu 1 307 -5 250 196 39 0 chr3 22874155 22874206 -195162952 + (TGAG)n Simple_repeat Simple_repeat 4 56 0 337 296 15 44 chr3 22874454 22874589 -195162569 + MIR3 SINE MIR 15 145 -63 372 176 98 0 chr3 22875319 22875421 -195161737 - Charlie5 DNA MER1_type 0 2624 2513 3280 145 24 19 chr3 22875619 22876199 -195160959 - L1MB8 LINE L1 -5 6173 5591 226 224 61 20 chr3 22876303 22876401 -195160757 + (TTATA)n Simple_repeat Simple_repeat 4 105 0 1851 125 30 7 chr3 22876416 22876719 -195160439 - AluSx SINE Alu -2 310 1 200 31 62 0 chr3 22876777 22876809 -195160349 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 312 282 51 32 chr3 22877383 22877539 -195159619 + MER113 DNA MER1_type? 249 407 -114 406 301 18 37 chr3 22877539 22877702 -195159456 - MER91B DNA MER1_type -27 163 4 251 196 20 0 chr3 22878122 22878173 -195158985 + MIR SINE MIR 72 123 -85 866 214 0 6 chr3 22878279 22878447 -195158711 - AluJb SINE Alu -1 311 145 339 270 7 15 chr3 22878680 22878817 -195158341 + C-rich Low_complexity Low_complexity 2 137 0 655 252 35 67 chr3 22878947 22879348 -195157810 - L1MEd LINE L1 -5173 946 559 672 295 73 58 chr3 22879404 22879801 -195157357 - L1MEd LINE L1 -5567 552 150 * 1222 246 41 52 chr3 22879798 22880111 -195157047 - L1M4 LINE L1 -1543 4603 4288 1813 97 8 0 chr3 22880111 22880370 -195156788 - L1MA2 LINE L1 0 6304 6044 781 122 0 0 chr3 22880371 22880478 -195156680 - U6 snRNA snRNA 0 107 1 1222 246 41 52 chr3 22880478 22880695 -195156463 - L1M4 LINE L1 -1857 4289 4077 248 265 51 20 chr3 22880680 22880778 -195156380 - L1MEd LINE L1 -5930 189 89 * 341 281 94 30 chr3 22880993 22881165 -195155993 - MIR SINE MIR -62 200 25 265 297 11 11 chr3 22881418 22881509 -195155649 + MIR SINE MIR 2 92 -170 996 197 69 5 chr3 22881792 22881995 -195155163 - MER20 DNA MER1_type -3 216 1 203 254 0 45 chr3 22882152 22882219 -195154939 + G-rich Low_complexity Low_complexity 2 65 0 1641 217 31 20 chr3 22882262 22882654 -195154504 - MLT1G LTR MaLR -173 417 22 1154 71 19 0 chr3 22883115 22883270 -195153888 + L1PA10 LINE L1 6011 6168 0 701 241 99 28 chr3 22883288 22883500 -195153658 + MIR SINE MIR 35 261 -1 438 242 31 0 chr3 22883902 22884030 -195153128 + Charlie7 DNA MER1_type 52 183 -2429 362 344 41 0 chr3 22884518 22884640 -195152518 - L2 LINE L2 0 3313 3187 323 265 0 0 chr3 22884645 22884724 -195152434 + MIR SINE MIR 74 145 -63 215 285 76 99 chr3 22884802 22884974 -195152184 - MIR3 SINE MIR -23 185 18 1433 266 88 79 chr3 22885454 22886136 -195151022 + L2 LINE L2 1040 1714 -1600 734 133 16 8 chr3 22886136 22886264 -195150894 - MER5A DNA MER1_type -31 158 30 1433 266 88 79 chr3 22886264 22886645 -195150513 + L2 LINE L2 1714 2090 -1224 1894 119 133 21 chr3 22886645 22886982 -195150176 - THE1C LTR MaLR 0 375 1 1433 266 88 79 chr3 22886982 22887255 -195149903 + L2 LINE L2 2090 2478 -836 2539 214 140 56 chr3 22887281 22887524 -195149634 - L1ME1 LINE L1 -6 6160 5939 1754 151 33 7 chr3 22887524 22887828 -195149330 - AluJb SINE Alu 0 312 1 2539 214 140 56 chr3 22887828 22887858 -195149300 - L1ME1 LINE L1 -227 5939 5913 731 144 0 0 chr3 22887858 22887962 -195149196 - U6 snRNA snRNA -3 104 1 2539 214 140 56 chr3 22887962 22888636 -195148522 - L1ME1 LINE L1 -253 5913 5166 1877 76 8 38 chr3 22888636 22888900 -195148258 - AluSq SINE Alu -3 310 55 592 333 24 5 chr3 22888901 22889114 -195148044 + MIR SINE MIR 35 251 -11 1985 199 34 16 chr3 22889267 22889606 -195147552 - L1ME1 LINE L1 0 6166 5816 3270 103 5 0 chr3 22889606 22890032 -195147126 + MSTC LTR MaLR 1 428 0 1985 199 34 16 chr3 22890032 22890140 -195147018 - L1ME1 LINE L1 -350 5816 5711 282 244 39 0 chr3 22890140 22890218 -195146940 + MLT1L LTR MaLR 434 514 -101 241 83 0 0 chr3 22890218 22890254 -195146904 - L1ME1 LINE L1 -533 5709 5674 1665 156 179 16 chr3 22890260 22890645 -195146513 - MER66A LTR ERV1 -4 474 27 800 189 7 0 chr3 22890652 22890805 -195146353 - L1ME1 LINE L1 -494 5672 5519 561 234 0 0 chr3 22890805 22890929 -195146229 + FLAM_C SINE Alu 10 133 -10 315 189 33 33 chr3 22891035 22891188 -195145970 + (CACAC)n Simple_repeat Simple_repeat 1 153 0 800 318 56 11 chr3 22891297 22891919 -195145239 + L1MEc LINE L1 1156 1710 -4505 535 311 77 35 chr3 22891920 22892180 -195144978 + L1MEc LINE L1 1859 2129 -4267 1685 175 38 9 chr3 22892206 22892521 -195144637 + MER2 DNA MER2_type 22 345 0 443 212 40 30 chr3 22892523 22892622 -195144536 + L1MEc LINE L1 2131 2230 -4166 230 348 65 0 chr3 22892629 22892721 -195144437 - L2 LINE L2 -4 3268 3171 273 350 83 6 chr3 22892777 22892957 -195144201 - L2 LINE L2 -214 3058 2865 296 186 17 0 chr3 22893071 22893130 -195144028 - MIR3 SINE MIR -28 180 121 283 361 35 18 chr3 22893167 22893336 -195143822 - L2 LINE L2 -590 2724 2553 811 104 37 8 chr3 22893413 22893547 -195143611 - MER72 LTR ERV1 -3 719 582 219 309 120 17 chr3 22893822 22893980 -195143178 - MIR SINE MIR -58 150 1 294 296 154 62 chr3 22894217 22894541 -195142617 - L2 LINE L2 -5 3267 2914 380 289 66 36 chr3 22894604 22894770 -195142388 + Charlie8 DNA MER1_type 1 171 -2246 706 310 92 41 chr3 22894834 22895115 -195142043 - L2 LINE L2 0 3313 3007 1508 159 12 16 chr3 22895115 22895373 -195141785 - AluJb SINE Alu -55 257 1 706 310 92 41 chr3 22895373 22895459 -195141699 - L2 LINE L2 -306 3007 2927 23 0 0 0 chr3 22895889 22895912 -195141246 + AT_rich Low_complexity Low_complexity 1 23 0 261 109 0 0 chr3 22896430 22896476 -195140682 + (CA)n Simple_repeat Simple_repeat 1 46 0 207 100 0 0 chr3 22897123 22897153 -195140005 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 275 239 42 0 chr3 22897514 22897585 -195139573 + L2 LINE L2 2976 3049 -223 1363 293 81 16 chr3 22897600 22898095 -195139063 - MLT1K LTR MaLR 0 588 62 403 302 79 25 chr3 22898161 22898363 -195138795 + L2 LINE L2 3100 3312 -1 188 292 142 17 chr3 22898690 22898810 -195138348 - MIR SINE MIR -75 187 53 375 267 25 8 chr3 22898819 22898939 -195138219 + MIR SINE MIR 39 160 -102 288 0 0 0 chr3 22899715 22899747 -195137411 + (CA)n Simple_repeat Simple_repeat 2 33 0 2258 100 3 0 chr3 22900474 22900784 -195136374 - AluSq SINE Alu -2 311 1 201 263 224 0 chr3 22900927 22901003 -195136155 + MIR SINE MIR 22 114 -148 291 249 59 35 chr3 22901837 22902006 -195135152 + Charlie7 DNA MER1_type 2434 2606 -6 264 305 102 20 chr3 22902080 22902215 -195134943 - MIR SINE MIR -8 254 95 1887 98 0 29 chr3 22902215 22902492 -195134666 - AluSx SINE Alu 0 312 44 264 305 102 20 chr3 22902492 22902575 -195134583 - MIR SINE MIR -167 95 20 299 229 119 28 chr3 22902809 22902918 -195134240 - L1ME4a LINE L1 -41 6080 5962 272 349 96 29 chr3 22902929 22903138 -195134020 - L1ME4a LINE L1 -200 5921 5699 902 268 158 9 chr3 22903480 22903961 -195133197 - L2 LINE L2 -1 3312 2734 2016 127 7 0 chr3 22904638 22904938 -195132220 + AluSg SINE Alu 1 302 -8 223 225 138 25 chr3 22905219 22905299 -195131859 + MIR SINE MIR 33 121 -87 326 289 10 0 chr3 22905444 22905541 -195131617 - MIR SINE MIR -110 152 55 452 265 73 20 chr3 22905819 22905970 -195131188 + MIR SINE MIR 70 228 -34 199 333 8 3 chr3 22906476 22906600 -195130558 + L3 LINE CR1 1390 1554 -23 263 226 9 26 chr3 22906895 22906977 -195130181 + MIR SINE MIR 107 185 -77 655 305 205 18 chr3 22906982 22907362 -195129796 - L2 LINE L2 0 3313 2863 233 278 166 13 chr3 22907726 22907877 -195129281 - L1ME LINE L1 -277 5887 5714 225 261 148 35 chr3 22907993 22908108 -195129050 - L1MC4 LINE L1 -589 7453 7326 515 274 18 30 chr3 22908130 22908294 -195128864 - L2 LINE L2 -561 2753 2592 181 170 128 0 chr3 22908336 22908383 -195128775 + L2 LINE L2 3214 3266 -6 1992 209 95 22 chr3 22908918 22909411 -195127747 - MLT1F LTR MaLR -2 540 12 317 250 104 10 chr3 22909472 22909568 -195127590 - L2 LINE L2 -18 3254 3150 208 240 53 13 chr3 22909796 22909871 -195127287 - L2 LINE L2 -210 3062 2985 532 211 63 28 chr3 22910578 22910720 -195126438 - MIR SINE MIR -32 230 84 2125 114 0 0 chr3 22910878 22911176 -195125982 + AluSx SINE Alu 1 298 -14 383 286 20 20 chr3 22911315 22911462 -195125696 - L1ME3A LINE L1 -230 5940 5794 250 312 0 0 chr3 22911531 22911608 -195125550 - MIR SINE MIR -118 144 68 215 271 17 0 chr3 22911945 22912004 -195125154 + MIR SINE MIR 111 170 -92 202 373 0 0 chr3 22912066 22912133 -195125025 - L2 LINE L2 0 3272 3206 295 279 31 31 chr3 22912946 22913075 -195124083 + MIR SINE MIR 18 146 -116 243 133 0 0 chr3 22913278 22913323 -195123835 + (GA)n Simple_repeat Simple_repeat 2 46 0 206 125 0 25 chr3 22914172 22914212 -195122946 + (GA)n Simple_repeat Simple_repeat 2 40 0 271 330 29 0 chr3 22914576 22914679 -195122479 + MIR SINE MIR 63 168 -94 * 651 301 10 10 chr3 22914675 22914868 -195122290 + MIR SINE MIR 10 202 -60 344 268 24 32 chr3 22915019 22915142 -195122016 - MIR SINE MIR -67 141 20 402 298 16 8 chr3 22915611 22915735 -195121423 - MIR SINE MIR -63 199 75 240 172 86 52 chr3 22916087 22916145 -195121013 - MIR SINE MIR -100 162 103 459 344 85 31 chr3 22916456 22916680 -195120478 - MIR SINE MIR -20 242 7 522 300 64 5 chr3 22916699 22916716 -195120442 + MER113 DNA MER1_type? 101 116 -405 1240 215 6 93 chr3 22916716 22917037 -195120121 - AluJo SINE Alu -8 294 2 522 300 64 5 chr3 22917037 22917239 -195119919 + MER113 DNA MER1_type? 116 333 -188 190 261 201 30 chr3 22917351 22917485 -195119673 - MIR SINE MIR -67 195 39 327 196 43 11 chr3 22917658 22917750 -195119408 - L2 LINE L2 -202 3070 2976 57 16 0 0 chr3 22917949 22918013 -195119145 + AT_rich Low_complexity Low_complexity 1 64 0 351 319 77 6 chr3 22918053 22918222 -195118936 - MIR3 SINE MIR -22 186 6 512 307 92 9 chr3 22918334 22918552 -195118606 - MIR SINE MIR 0 262 27 260 342 66 7 chr3 22919330 22919482 -195117676 + MER117 DNA MER1_type 32 192 -5 219 69 0 0 chr3 22919492 22919521 -195117637 + (TCCCC)n Simple_repeat Simple_repeat 1 29 0 553 292 108 20 chr3 22919527 22920154 -195117004 + L2 LINE L2 2462 3142 -171 296 275 64 18 chr3 22920348 22920457 -195116701 + L2 LINE L2 2926 3039 -233 276 362 21 0 chr3 22920495 22920589 -195116569 + L2 LINE L2 3168 3263 -9 934 253 154 7 chr3 22921648 22921933 -195115225 + MLT1G1 LTR MaLR 2 328 -267 306 321 102 27 chr3 22921936 22922346 -195114812 - L2 LINE L2 -255 3017 2560 496 274 41 7 chr3 22922670 22922816 -195114342 - MIR SINE MIR -60 202 52 241 300 0 0 chr3 22923639 22923709 -195113449 + MIR SINE MIR 81 150 -58 313 256 12 0 chr3 22923992 22924074 -195113084 + MER5B DNA MER1_type 89 171 -7 425 243 44 29 chr3 22924077 22924213 -195112945 + MIR SINE MIR 14 151 -111 2212 93 3 6 chr3 22924376 22924687 -195112471 + AluY SINE Alu 1 310 -1 1048 262 28 0 chr3 22925084 22925332 -195111826 - MIR SINE MIR -7 255 1 334 290 73 8 chr3 22925385 22925509 -195111649 - MIR SINE MIR -123 139 8 283 314 78 10 chr3 22925536 22925638 -195111520 - L2 LINE L2 0 3313 3205 302 241 74 31 chr3 22925967 22926106 -195111052 + MIR3 SINE MIR 5 154 -62 185 250 141 0 chr3 22926260 22926324 -195110834 + L3 LINE CR1 572 644 -933 186 266 53 53 chr3 22926431 22926544 -195110614 + L2 LINE L2 2862 2974 -298 471 329 0 0 chr3 22927649 22927786 -195109372 + MIR SINE MIR 37 173 -89 210 260 178 47 chr3 22928104 22928273 -195108885 + MIR3 SINE MIR 7 197 -11 2004 110 0 21 chr3 22929081 22929402 -195107756 + AluSx SINE Alu 1 315 0 214 364 16 8 chr3 22929422 22929543 -195107615 + (CCCTAG)n Simple_repeat Simple_repeat 2 123 0 2514 40 0 0 chr3 22930197 22930495 -195106663 - AluY SINE Alu -13 298 1 299 143 95 0 chr3 22930701 22930764 -195106394 + MIR3 SINE MIR 114 182 -26 421 353 45 18 chr3 22931091 22931312 -195105846 + MIR SINE MIR 20 246 -16 1760 175 0 13 chr3 22931571 22931862 -195105296 + AluJo SINE Alu 1 289 -23 243 0 0 0 chr3 22931862 22931889 -195105269 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 1760 175 0 13 chr3 22931889 22931905 -195105253 + AluJo SINE Alu 289 304 -8 362 271 42 0 chr3 22932204 22932300 -195104858 - MIR SINE MIR -119 143 44 1740 128 62 24 chr3 22932463 22932751 -195104407 - AluSx SINE Alu -13 299 1 331 305 34 17 chr3 22933273 22933391 -195103767 + MIR SINE MIR 33 152 -110 1610 125 23 4 chr3 22933998 22934103 -195103055 + AluSx SINE Alu 23 124 -192 441 0 0 0 chr3 22934103 22934152 -195103006 + (CA)n Simple_repeat Simple_repeat 2 50 0 1610 125 23 4 chr3 22934152 22934335 -195102823 + AluSx SINE Alu 124 316 0 195 258 0 0 chr3 22935069 22935131 -195102027 + L2 LINE L2 2908 2969 -303 605 268 89 0 chr3 22935147 22935304 -195101854 + MIR SINE MIR 90 260 -2 280 317 14 0 chr3 22935562 22935681 -195101477 - MIR SINE MIR -62 146 23 233 373 81 0 chr3 22935708 22935893 -195101265 - L2 LINE L2 -49 3223 3024 263 283 19 0 chr3 22936372 22936470 -195100688 + MIR SINE MIR 69 146 -62 2109 90 7 3 chr3 22936781 22937070 -195100088 + AluSg SINE Alu 1 290 -20 1535 249 130 39 chr3 22937084 22937122 -195100036 - L1ME1 LINE L1 -4 6162 6129 2037 149 41 39 chr3 22937122 22937511 -195099647 - MLT1B LTR MaLR 0 390 1 1535 249 130 39 chr3 22937511 22938261 -195098897 - L1ME1 LINE L1 -37 6129 5448 2867 138 21 29 chr3 22938261 22938776 -195098382 - L1MB3 LINE L1 -7 6176 5666 1620 183 14 3 chr3 22938776 22939071 -195098087 - AluJb SINE Alu -12 300 3 1535 249 130 39 chr3 22939071 22939138 -195098020 - L1ME1 LINE L1 -717 5449 5259 204 158 0 0 chr3 22939575 22939613 -195097545 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 567 200 73 0 chr3 22940007 22940157 -195097001 + L2 LINE L2 2900 3060 -253 270 245 113 50 chr3 22940357 22940516 -195096642 - MIR3 SINE MIR -37 171 3 400 294 9 0 chr3 22940777 22940886 -195096272 - MER81 DNA DNA -3 111 2 238 245 219 26 chr3 22941903 22942054 -195095104 + MER5A DNA MER1_type 4 183 -6 224 257 148 30 chr3 22942246 22942347 -195094811 + L2 LINE L2 3141 3253 -19 321 326 93 58 chr3 22943436 22943780 -195093378 - L2 LINE L2 -3 3269 2914 1870 247 112 100 chr3 22943815 22943911 -195093247 + MER45C DNA AcHobo 49 142 -1439 1600 188 11 0 chr3 22943911 22944198 -195092960 - AluJb SINE Alu -22 290 1 273 98 0 0 chr3 22944204 22944245 -195092913 + (TG)n Simple_repeat Simple_repeat 2 42 0 1987 110 3 0 chr3 22944245 22944527 -195092631 - AluY SINE Alu -28 283 1 1870 247 112 100 chr3 22944527 22945246 -195091912 + MER45C DNA AcHobo 146 886 -695 1780 163 30 0 chr3 22945246 22945547 -195091611 + AluJb SINE Alu 1 310 -2 1870 247 112 100 chr3 22945547 22945616 -195091542 + MER45C DNA AcHobo 886 953 0 660 193 28 39 chr3 22946301 22946482 -195090676 - MER53 DNA DNA -9 180 2 189 277 77 0 chr3 22946746 22946811 -195090347 - MIR SINE MIR -62 146 77 482 243 62 22 chr3 22946898 22947094 -195090064 + MIR SINE MIR 1 208 -54 674 211 62 37 chr3 22947319 22947480 -195089678 + FRAM SINE Alu 2 166 0 592 307 97 25 chr3 22947703 22947941 -195089217 - MIR SINE MIR -1 261 7 344 260 14 0 chr3 22947935 22948008 -195089150 + L2 LINE L2 3238 3311 -2 * 304 228 0 0 chr3 22948111 22948168 -195088990 + L2 LINE L2 3215 3271 -1 3127 160 19 14 chr3 22948435 22949023 -195088135 - L1MB7 LINE L1 -2 6182 5592 536 257 131 0 chr3 22949180 22949355 -195087803 + MIR SINE MIR 49 246 -16 181 281 53 35 chr3 22949414 22949471 -195087687 - MIR SINE MIR -64 144 87 408 195 153 34 chr3 22949605 22949723 -195087435 + MIR SINE MIR 74 205 -57 263 238 32 0 chr3 22949979 22950042 -195087116 + L2 LINE L2 3248 3312 -1 219 349 16 0 chr3 22950143 22950206 -195086952 + L2 LINE L2 3246 3309 -4 305 224 106 12 chr3 22951240 22951325 -195085833 - L2 LINE L2 -172 3100 3008 220 338 13 13 chr3 22951479 22951556 -195085602 + MIR SINE MIR 186 262 0 253 193 34 68 chr3 22951810 22951898 -195085260 + L2 LINE L2 3225 3309 -4 242 329 0 0 chr3 22951972 22952056 -195085102 - MER117 DNA MER1_type 0 197 114 270 111 238 0 chr3 22952056 22952119 -195085039 - MLT1K LTR MaLR 0 588 511 247 226 16 0 chr3 22952536 22952598 -195084560 - MER117 DNA MER1_type -79 118 56 304 231 176 22 chr3 22952689 22952780 -195084378 + MIR SINE MIR 32 136 -72 1806 166 34 9 chr3 22952785 22953111 -195084047 + MLT1A1 LTR MaLR 5 338 -27 291 266 80 9 chr3 22953125 22953238 -195083920 + MIR SINE MIR 132 252 -10 1312 264 68 15 chr3 22953246 22953644 -195083514 - LTR16C LTR ERVL -2 489 71 4052 163 25 26 chr3 22954240 22954746 -195082412 - L1MB7 LINE L1 -11 6173 5667 2402 160 13 8 chr3 22954746 22955140 -195082018 + MSTD LTR MaLR 1 396 0 4052 163 25 26 chr3 22955140 22955424 -195081734 - L1MB7 LINE L1 -517 5667 5384 2260 291 9 7 chr3 22955616 22956197 -195080961 - MLT1K LTR MaLR -4 584 3 1338 194 6 2 chr3 22956401 22956711 -195080447 - MLT1A1 LTR MaLR 0 365 1 477 302 44 19 chr3 22957581 22957740 -195079418 + MIR SINE MIR 21 183 -79 803 148 8 0 chr3 22958090 22958218 -195078940 + FLAM_C SINE Alu 5 133 0 449 238 16 32 chr3 22958763 22958889 -195078269 + MLT1J2 LTR MaLR 84 207 -243 1291 176 176 60 chr3 22958960 22959313 -195077845 + MSTD LTR MaLR 1 394 -2 1091 128 6 34 chr3 22959382 22959561 -195077597 + MER20 DNA MER1_type 46 219 0 428 296 19 19 chr3 22959584 22959746 -195077412 + L2 LINE L2 2710 2871 -443 503 311 114 18 chr3 22960042 22960270 -195076888 + MIR SINE MIR 11 260 -2 355 276 20 0 chr3 22960997 22961095 -195076063 + MIR SINE MIR 109 208 -54 590 161 90 13 chr3 22961096 22961251 -195075907 - L1 LINE L1 -3004 3142 2976 3407 137 28 18 chr3 22961252 22961851 -195075307 + L1MA7 LINE L1 5687 6291 0 238 250 42 0 chr3 22961872 22961944 -195075214 + MLT1F1 LTR MaLR 73 147 -420 2273 237 23 11 chr3 22961944 22962502 -195074656 + L1MC3 LINE L1 7213 7777 -8 450 284 87 28 chr3 22962705 22962923 -195074235 + L2 LINE L2 2666 2896 -418 2152 196 40 13 chr3 22963398 22963853 -195073305 + MLT1C LTR MaLR 1 467 0 735 250 14 55 chr3 22964624 22964813 -195072345 + MIR SINE MIR 20 199 -63 203 323 20 30 chr3 22966462 22966561 -195070597 + MIR SINE MIR 63 160 -102 307 271 57 16 chr3 22966909 22967031 -195070127 + MIR SINE MIR 114 240 -22 571 297 43 9 chr3 22967051 22967283 -195069875 - MLT1D LTR MaLR -3 502 263 293 311 49 8 chr3 22967843 22967965 -195069193 + MIR SINE MIR 114 240 -22 1604 236 89 23 chr3 22967984 22968455 -195068703 - MLT1D LTR MaLR -3 502 1 731 169 90 24 chr3 22968486 22968652 -195068506 - MIR SINE MIR -66 196 20 1804 61 0 41 chr3 22968668 22968913 -195068245 - AluSg SINE Alu -75 235 1 200 205 0 0 chr3 22968950 22968989 -195068169 + MIR SINE MIR 224 262 0 639 250 0 0 chr3 22970182 22970310 -195066848 - MIR SINE MIR -51 211 84 2362 46 0 0 chr3 22970328 22970610 -195066548 + AluSp SINE Alu 1 282 -31 1883 134 20 0 chr3 22972743 22973035 -195064123 + AluJb SINE Alu 1 298 -14 2289 248 97 26 chr3 22973679 22974514 -195062644 - L1MC4 LINE L1 -30 8012 7119 283 262 90 33 chr3 22975006 22975128 -195062030 + MIR SINE MIR 87 215 -47 233 226 97 54 chr3 22975187 22975280 -195061878 + L2 LINE L2 1875 1971 -1343 225 350 120 8 chr3 22975341 22975575 -195061583 + L2 LINE L2 2806 3065 -248 571 266 62 21 chr3 22975801 22975993 -195061165 + L2 LINE L2 3111 3310 -3 522 272 15 29 chr3 22976270 22976406 -195060752 - L2 LINE L2 0 3313 3180 222 250 47 94 chr3 22976784 22976912 -195060246 - L2 LINE L2 -10 3262 3141 1351 168 39 81 chr3 22977117 22977426 -195059732 + AluJo SINE Alu 5 300 -12 2081 121 0 0 chr3 22977932 22978229 -195058929 + AluSg SINE Alu 1 297 -13 200 233 53 120 chr3 22978303 22978436 -195058722 + MIR SINE MIR 28 151 -111 233 270 0 16 chr3 22980326 22980389 -195056769 - L2 LINE L2 -13 3259 3198 295 323 21 0 chr3 22980605 22980698 -195056460 + MIR SINE MIR 59 153 -109 784 157 0 22 chr3 22981436 22981570 -195055588 - AluJ SINE Alu 0 312 182 817 129 8 0 chr3 22981579 22981703 -195055455 - AluJ SINE Alu -187 125 1 225 0 0 0 chr3 22983635 22983660 -195053498 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2182 82 3 28 chr3 22984145 22984464 -195052694 + AluY SINE Alu 1 311 0 2230 85 3 0 chr3 22984737 22985031 -195052127 + AluSx SINE Alu 1 295 -17 27 29 0 0 chr3 22986911 22986945 -195050213 + AT_rich Low_complexity Low_complexity 1 34 0 794 266 54 76 chr3 22987154 22987616 -195049542 - MLT1J LTR MaLR -52 459 8 569 324 94 25 chr3 22987997 22988241 -195048917 + MIR SINE MIR 2 262 0 221 285 33 80 chr3 22990743 22990894 -195046264 - MIR3 SINE MIR -62 146 3 2241 181 32 7 chr3 22991046 22991477 -195045681 + L1M4 LINE L1 4594 5035 -1111 2517 63 0 3 chr3 22991609 22991908 -195045250 + AluY SINE Alu 1 298 -13 1176 78 13 13 chr3 22992418 22992572 -195044586 + AluSp SINE Alu 147 300 -13 1187 164 130 34 chr3 22992583 22992907 -195044251 - Charlie5 DNA MER1_type -25 2587 2233 360 265 39 0 chr3 22992902 22993004 -195044154 - Charlie5 DNA MER1_type -2506 106 1 * 2057 110 38 10 chr3 22994071 22994387 -195042771 - AluSx SINE Alu 0 312 1 2378 93 0 3 chr3 22995885 22996196 -195040962 - AluSq SINE Alu -3 310 1 239 301 125 34 chr3 22996798 22996974 -195040184 + L2 LINE L2 3076 3267 -5 316 360 36 21 chr3 22997294 22997553 -195039605 + L2 LINE L2 2777 3037 -235 198 0 0 0 chr3 22997554 22997576 -195039582 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 557 251 95 71 chr3 22997791 22998158 -195039000 - MLT1J LTR MaLR -31 584 201 3966 167 63 15 chr3 22998252 22999061 -195038097 + L1MB8 LINE L1 5331 6178 0 418 203 203 7 chr3 23000353 23000501 -195036657 + MER104 DNA MER2_type 4 180 0 192 97 0 0 chr3 23001388 23001419 -195035739 + (CCA)n Simple_repeat Simple_repeat 3 33 0 2379 99 0 0 chr3 23001993 23002296 -195034862 + AluSg SINE Alu 1 303 -7 410 303 25 12 chr3 23002879 23003041 -195034117 + L1ME3A LINE L1 5493 5656 -514 209 274 119 0 chr3 23003043 23003127 -195034031 - MER5C DNA MER1_type -2 322 229 208 296 10 51 chr3 23003138 23003236 -195033922 - MER5C DNA MER1_type -200 124 31 302 296 42 58 chr3 23003248 23003302 -195033856 + L1ME3A LINE L1 5649 5702 -468 834 138 15 15 chr3 23003302 23003432 -195033726 + FLAM_C SINE Alu 4 133 0 302 296 42 58 chr3 23003432 23003617 -195033541 + L1ME3A LINE L1 5702 5884 -286 207 69 0 0 chr3 23003977 23004006 -195033152 + (TC)n Simple_repeat Simple_repeat 1 29 0 267 103 0 0 chr3 23004006 23004045 -195033113 + (TG)n Simple_repeat Simple_repeat 2 40 0 4781 137 23 29 chr3 23004045 23004377 -195032781 - L1MA9 LINE L1 -162 6150 5818 2387 94 0 0 chr3 23004377 23004685 -195032473 - AluSc SINE Alu -1 308 1 4781 137 23 29 chr3 23004685 23005211 -195031947 - L1MA9 LINE L1 -494 5818 5297 2274 115 6 6 chr3 23006773 23007085 -195030073 + AluSx SINE Alu 1 312 0 335 274 17 34 chr3 23009590 23009707 -195027451 - L2 LINE L2 -6 3307 3193 605 124 124 70 chr3 23010021 23010150 -195027008 + MER44D DNA MER2_type 1 406 -203 23728 139 37 12 chr3 23010151 23013314 -195023844 - L1MA3 LINE L1 0 7724 4641 2242 123 0 3 chr3 23013314 23013614 -195023544 - AluSx SINE Alu -11 301 3 23728 139 37 12 chr3 23013614 23014894 -195022264 - L1MA3 LINE L1 -3083 4641 3394 1828 129 53 0 chr3 23014894 23015198 -195021960 - AluSx SINE Alu 0 324 7 23728 139 37 12 chr3 23015198 23016084 -195021074 - L1MA3 LINE L1 -4330 3394 2532 4765 50 0 14 chr3 23016084 23016670 -195020488 - L1PA6 LINE L1 -6 6148 5571 23728 139 37 12 chr3 23016670 23018862 -195018296 - L1MA3 LINE L1 -5192 2532 20 1019 178 55 0 chr3 23018865 23019067 -195018091 + MER44D DNA MER2_type 385 597 -8 2608 72 29 0 chr3 23020582 23020927 -195016231 - THE1A LTR MaLR 0 355 1 2906 67 30 40 chr3 23020927 23020968 -195016190 - THE1A-int LTR MaLR 0 1580 1540 2283 117 0 0 chr3 23020968 23021268 -195015890 - AluSx SINE Alu -12 300 1 2906 67 30 40 chr3 23021268 23021631 -195015527 - THE1A-int LTR MaLR -40 1540 1180 263 222 34 77 chr3 23022016 23022133 -195015025 - MIR SINE MIR -82 180 69 184 288 30 0 chr3 23024209 23024275 -195012883 - MIR SINE MIR -59 149 82 294 341 50 22 chr3 23024277 23024459 -195012699 - MIR3 SINE MIR -6 202 16 409 260 102 16 chr3 23025182 23025309 -195011849 + MIR3 SINE MIR 34 171 -37 2471 77 0 0 chr3 23025495 23025795 -195011363 + AluY SINE Alu 1 300 -11 10209 221 38 37 chr3 23025891 23025973 -195011185 - L1M4 LINE L1 -712 5702 5622 423 0 0 0 chr3 23025973 23026020 -195011138 + (TG)n Simple_repeat Simple_repeat 2 48 0 10209 221 38 37 chr3 23026020 23026340 -195010818 - L1M4 LINE L1 -792 5622 5304 2383 91 7 13 chr3 23026340 23026649 -195010509 - AluSp SINE Alu -6 307 1 10209 221 38 37 chr3 23026649 23027160 -195009998 - L1M4 LINE L1 -1110 5304 4795 2086 125 4 0 chr3 23027160 23027470 -195009688 - AluSx SINE Alu 0 311 1 10209 221 38 37 chr3 23027470 23029410 -195007748 - L1M4 LINE L1 -1619 4795 2845 2233 118 0 13 chr3 23029410 23029724 -195007434 - AluSx SINE Alu -2 310 1 10209 221 38 37 chr3 23029724 23030101 -195007057 - L1M4 LINE L1 -3569 2845 2470 1456 189 118 38 chr3 23030250 23030420 -195006738 + MLT1C LTR MaLR 7 162 -305 444 104 0 0 chr3 23030420 23030487 -195006671 + (CA)n Simple_repeat Simple_repeat 2 68 0 1456 189 118 38 chr3 23030487 23030740 -195006418 + MLT1C LTR MaLR 162 464 -3 3156 214 29 18 chr3 23030758 23031634 -195005524 - L1M4 LINE L1 -4229 2155 1179 245 247 71 35 chr3 23031836 23031921 -195005237 + MIR SINE MIR 46 133 -129 577 159 11 0 chr3 23031921 23032009 -195005149 - MER81 DNA DNA 0 114 26 213 176 98 0 chr3 23032018 23032069 -195005089 + MIR SINE MIR 128 183 -79 1919 151 3 31 chr3 23032858 23033175 -195003983 - AluJo SINE Alu -2 310 3 23 0 0 0 chr3 23033936 23033959 -195003199 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr3 23034226 23034262 -195002896 + AT_rich Low_complexity Low_complexity 1 36 0 1029 160 129 10 chr3 23034293 23034487 -195002671 - MER20 DNA MER1_type 0 219 3 288 252 19 39 chr3 23035030 23035133 -195002025 - MER5B DNA MER1_type -1 177 77 338 292 62 28 chr3 23035310 23035454 -195001704 + MIR3 SINE MIR 2 150 -58 2836 266 76 40 chr3 23035901 23037490 -194999668 - L1ME LINE L1 -4440 1640 6 344 316 35 0 chr3 23038118 23038232 -194998926 - MIR SINE MIR -142 120 3 2379 74 0 3 chr3 23038266 23038601 -194998557 - AluY SINE Alu 0 335 2 462 18 0 0 chr3 23038806 23038861 -194998297 + (TTG)n Simple_repeat Simple_repeat 1 55 0 1799 301 38 11 chr3 23040234 23040785 -194996373 - MLT1K LTR MaLR 0 588 23 219 343 131 45 chr3 23040834 23041032 -194996126 + L2 LINE L2 3056 3270 -2 557 206 0 64 chr3 23041301 23041442 -194995716 - MER94 DNA DNA -1 133 2 290 263 115 77 chr3 23041667 23041823 -194995335 - L2 LINE L2 0 3272 3111 1789 117 33 4 chr3 23042050 23042391 -194994767 - AluSx SINE Alu 0 349 1 1222 218 29 3 chr3 23042777 23043093 -194994065 + MER33 DNA MER1_type 1 324 0 181 287 0 81 chr3 23044174 23044261 -194992897 - L2 LINE L2 -159 3113 3034 739 219 186 39 chr3 23044346 23044657 -194992501 - LTR16A LTR ERVL -6 444 88 297 272 121 92 chr3 23044751 23045056 -194992102 - L2 LINE L2 -8 3264 2951 202 292 97 0 chr3 23045899 23046012 -194991146 + L2 LINE L2 2968 3091 -181 193 260 78 13 chr3 23046225 23046302 -194990856 - L2 LINE L2 -74 3239 3158 395 313 30 24 chr3 23046993 23047159 -194989999 - L2 LINE L2 -43 3270 3104 974 212 150 27 chr3 23047169 23047462 -194989696 + MER58B DNA MER1_type 1 329 -12 511 291 57 8 chr3 23047476 23047789 -194989369 - L2 LINE L2 -196 3117 2783 2059 107 7 0 chr3 23047818 23048117 -194989041 - AluSx SINE Alu -11 301 1 1058 238 62 40 chr3 23048168 23048521 -194988637 - L1ME3A LINE L1 -2 6428 6068 940 226 72 25 chr3 23048905 23049290 -194987868 - MER68 LTR ERV1 -122 440 1 2402 189 50 20 chr3 23049290 23049990 -194987168 - L1ME3A LINE L1 -540 6064 5337 1280 184 9 0 chr3 23049990 23050207 -194986951 + MER20 DNA MER1_type 1 219 0 2402 189 50 20 chr3 23050207 23050429 -194986729 - L1ME3A LINE L1 -1267 5337 5123 1083 184 24 0 chr3 23050443 23050649 -194986509 - L1ME3A LINE L1 -2267 4139 3929 * 3375 252 82 32 chr3 23050630 23051132 -194986026 - L1M4 LINE L1 -2215 3931 3455 2214 96 0 0 chr3 23051132 23051424 -194985734 - AluSc SINE Alu -17 292 1 3375 252 82 32 chr3 23051424 23052632 -194984526 - L1M4 LINE L1 -2691 3455 2136 756 303 71 58 chr3 23052652 23053032 -194984126 - L1ME3A LINE L1 -4131 2456 2072 2192 101 0 3 chr3 23053035 23053332 -194983826 - AluSx SINE Alu -16 296 1 579 259 4 30 chr3 23053394 23053626 -194983532 - L1M4 LINE L1 -2666 3480 3255 344 222 141 59 chr3 23053626 23053722 -194983436 - L1ME3A LINE L1 -4637 1950 1863 2170 128 0 0 chr3 23053722 23054028 -194983130 - AluSx SINE Alu -6 306 1 1811 150 0 0 chr3 23054037 23054304 -194982854 - AluSx SINE Alu -45 267 1 344 222 141 59 chr3 23054304 23054332 -194982826 - L1ME3A LINE L1 -4731 1856 1805 387 288 84 34 chr3 23054343 23054666 -194982492 - L1ME3A LINE L1 -4773 1635 1297 448 281 91 17 chr3 23054717 23054780 -194982378 - L1MDb LINE L1 -4957 1439 1382 15605 123 21 10 chr3 23054780 23055602 -194981556 - Tigger1 DNA MER2_type 0 2418 1606 2184 111 0 13 chr3 23055602 23055772 -194981386 - AluSx SINE Alu -9 303 132 2251 81 0 10 chr3 23055772 23056068 -194981090 - AluY SINE Alu -18 293 1 2055 92 6 68 chr3 23056068 23056393 -194980765 - AluSp SINE Alu -8 305 1 2184 111 0 13 chr3 23056393 23056528 -194980630 - AluSx SINE Alu -178 134 1 15605 123 21 10 chr3 23056528 23058097 -194979061 - Tigger1 DNA MER2_type -812 1606 1 448 281 91 17 chr3 23058097 23058425 -194978733 - L1MDb LINE L1 -5014 1382 1030 2024 188 7 63 chr3 23059055 23059502 -194977656 - MER66B LTR ERV1 -38 448 27 343 288 39 48 chr3 23059509 23059554 -194977604 - L2 LINE L2 -658 2656 2612 469 43 145 0 chr3 23059554 23059623 -194977535 + MADE1 DNA Mariner 1 79 -1 343 288 39 48 chr3 23059623 23059778 -194977380 - L2 LINE L2 -702 2612 2370 2748 79 3 3 chr3 23060088 23060441 -194976717 - THE1A LTR MaLR 0 355 3 11852 88 14 1 chr3 23060443 23062004 -194975154 - THE1A-int LTR MaLR 0 1580 1 2681 82 8 3 chr3 23062004 23062357 -194974801 - THE1A LTR MaLR 0 355 1 430 293 127 6 chr3 23062616 23062797 -194974361 - LTR33 LTR ERVL -198 323 121 607 271 23 7 chr3 23062985 23063259 -194973899 - L1MC/D LINE L1 -2081 6225 5864 1193 189 35 16 chr3 23063264 23063518 -194973640 - L1MB4 LINE L1 -14 6166 5908 1767 230 38 9 chr3 23063518 23063966 -194973192 - MER65C LTR ERV1 0 461 1 1950 223 56 71 chr3 23064460 23065011 -194972147 - MER65-int LTR ERV1 -656 4215 3673 27 62 0 0 chr3 23065182 23065230 -194971928 + AT_rich Low_complexity Low_complexity 1 48 0 4466 238 46 14 chr3 23065246 23066702 -194970456 - L1MC/D LINE L1 -2386 4258 2756 701 192 0 0 chr3 23066703 23066823 -194970335 - FLAM_A SINE Alu -15 127 8 5075 189 106 39 chr3 23066835 23067624 -194969534 - L1MC/D LINE L1 -3885 2761 2027 1660 171 10 26 chr3 23067624 23067929 -194969229 + AluJb SINE Alu 1 300 -12 5075 189 106 39 chr3 23067929 23068606 -194968552 - L1MC/D LINE L1 -4619 2027 1196 1557 156 8 4 chr3 23068605 23068843 -194968315 + L1P3 LINE L1 2 240 -6221 * 9578 66 0 0 chr3 23068845 23070846 -194966312 + L1PA6 LINE L1 4148 6143 -11 2122 206 59 74 chr3 23070847 23071537 -194965621 - L1MC/D LINE L1 -5342 1200 521 445 213 8 16 chr3 23071678 23071800 -194965358 + Alu SINE Alu 183 303 -7 287 173 0 19 chr3 23072046 23072098 -194965060 + L2 LINE L2 3255 3305 -8 1333 247 117 43 chr3 23072098 23072899 -194964259 - L2 LINE L2 -8 3305 2438 355 280 32 0 chr3 23072925 23073018 -194964140 - MIR SINE MIR -61 147 52 247 327 0 19 chr3 23075065 23075169 -194961989 + L3 LINE CR1 987 1088 -489 892 190 42 53 chr3 23075380 23075643 -194961515 + L1ME LINE L1 5391 5650 -520 2092 63 7 7 chr3 23075729 23076034 -194961124 - AluY SINE Alu 0 305 1 320 196 36 63 chr3 23076039 23076164 -194960994 - MIR SINE MIR -68 140 31 639 247 41 111 chr3 23076323 23076750 -194960408 + L1ME4a LINE L1 4987 5384 -782 1731 165 0 13 chr3 23076758 23077074 -194960084 + AluJo SINE Alu 1 312 0 606 288 104 47 chr3 23077158 23077457 -194959701 + L1M4 LINE L1 58 373 -6169 295 191 20 35 chr3 23077815 23078021 -194959137 + G-rich Low_complexity Low_complexity 1 202 0 364 307 49 9 chr3 23078667 23078779 -194958379 + L1ME4a LINE L1 5676 5782 -339 1941 111 0 0 chr3 23078779 23079049 -194958109 + AluSg SINE Alu 35 304 -6 364 307 49 9 chr3 23079049 23079161 -194957997 + L1ME4a LINE L1 5782 5909 -212 259 246 116 0 chr3 23079448 23079517 -194957641 + MIR SINE MIR 48 124 -84 192 331 105 8 chr3 23080001 23080134 -194957024 - L3 LINE CR1 -223 1354 1209 849 122 0 0 chr3 23080843 23080974 -194956184 - FRAM SINE Alu -6 170 40 415 260 79 13 chr3 23081245 23081420 -194955738 + MIR SINE MIR 6 191 -58 1659 170 14 17 chr3 23082047 23082341 -194954817 - MLT1A1 LTR MaLR -65 300 8 326 272 160 16 chr3 23082453 23082578 -194954580 + MIR SINE MIR 69 211 -51 344 222 20 20 chr3 23082758 23082857 -194954301 + (CA)n Simple_repeat Simple_repeat 2 100 0 208 206 8 30 chr3 23082881 23083012 -194954146 + (CA)n Simple_repeat Simple_repeat 1 128 0 218 338 93 65 chr3 23083024 23083163 -194953995 + L3 LINE CR1 168 310 -1267 263 211 42 0 chr3 23083192 23083263 -194953895 - MLT1G3 LTR MaLR 0 595 522 309 151 0 0 chr3 23083264 23083317 -194953841 + (TTG)n Simple_repeat Simple_repeat 2 54 0 987 219 99 33 chr3 23083344 23083745 -194953413 - MLT1G3 LTR MaLR -107 460 1 328 288 283 19 chr3 23083815 23084027 -194953131 + L3 LINE CR1 430 697 -880 190 283 40 30 chr3 23087262 23087361 -194949797 - L2 LINE L2 -556 2758 2659 187 200 0 0 chr3 23089465 23089479 -194947679 + L2 LINE L2 3262 3275 -38 365 303 27 38 chr3 23089479 23089661 -194947497 + MIR3 SINE MIR 2 180 -63 1599 213 136 22 chr3 23089754 23089780 -194947378 - MLT1C LTR MaLR -7 460 438 1585 181 67 6 chr3 23089780 23090123 -194947035 + MLT1A1 LTR MaLR 2 365 0 1599 213 136 22 chr3 23090123 23090509 -194946649 - MLT1C LTR MaLR -29 438 1 306 237 16 21 chr3 23092161 23092391 -194944767 + GA-rich Low_complexity Low_complexity 1 228 0 1129 222 166 15 chr3 23094237 23094632 -194942526 - MER41B LTR ERV1 -10 560 173 201 194 0 0 chr3 23094709 23094745 -194942413 - MIR SINE MIR -61 147 112 552 293 11 21 chr3 23094849 23095040 -194942118 + L1ME LINE L1 3 191 -5928 1175 240 81 17 chr3 23095063 23095706 -194941452 + L1ME LINE L1 4879 5573 -576 2350 96 0 7 chr3 23096489 23096792 -194940366 + AluSq SINE Alu 1 301 -12 1296 161 10 0 chr3 23097153 23097346 -194939812 + AluJb SINE Alu 82 276 -36 361 322 88 22 chr3 23097395 23097712 -194939446 + HAL1 LINE L1 1218 1555 -952 695 270 72 46 chr3 23098010 23098063 -194939095 + L1MEd LINE L1 2125 2175 -3954 2714 161 8 0 chr3 23098063 23098561 -194938597 + L1MB8 LINE L1 5675 6176 -2 695 270 72 46 chr3 23098561 23098891 -194938267 + L1MEd LINE L1 2175 2495 -3634 781 196 0 0 chr3 23098891 23099024 -194938134 - FLAM_A SINE Alu 0 133 1 695 270 72 46 chr3 23099024 23099467 -194937691 + L1MEd LINE L1 2495 3011 -3118 891 266 143 26 chr3 23099699 23100083 -194937075 + MLT1J2 LTR MaLR 1 429 -21 2000 110 25 3 chr3 23100278 23100560 -194936598 + AluJb SINE Alu 12 299 -13 2269 145 70 2 chr3 23100716 23101117 -194936041 + MSTA LTR MaLR 1 428 0 974 199 23 5 chr3 23101159 23101380 -194935778 - L1ME3A LINE L1 -213 5957 5733 715 292 79 61 chr3 23101376 23101783 -194935375 + L1MEd LINE L1 3618 4043 -2086 * 2373 111 0 0 chr3 23101783 23102089 -194935069 - AluSq SINE Alu -6 307 2 715 292 79 61 chr3 23102089 23102353 -194934805 + L1MEd LINE L1 4043 4301 -1828 380 313 36 26 chr3 23102649 23102844 -194934314 + MIR SINE MIR 59 255 -7 347 255 88 0 chr3 23103389 23103491 -194933667 - MER112 DNA MER1_type -6 254 144 1135 169 0 6 chr3 23103547 23103730 -194933428 + AluSg/x SINE Alu 120 301 -11 267 283 106 9 chr3 23103745 23103858 -194933300 + MIR SINE MIR 70 193 -69 253 267 0 0 chr3 23103918 23103978 -194933180 - MER112 DNA MER1_type -200 60 1 206 324 37 9 chr3 23104420 23104528 -194932630 - MIR SINE MIR -65 143 33 325 314 94 23 chr3 23104608 23104907 -194932251 + L2 LINE L2 2826 3145 -168 419 306 35 35 chr3 23104955 23105154 -194932004 + MIR SINE MIR 53 251 -11 3140 152 136 57 chr3 23105161 23105713 -194931445 + L1MB8 LINE L1 5302 5936 -242 2124 95 33 16 chr3 23105713 23106019 -194931139 - AluSx SINE Alu -1 311 1 3140 152 136 57 chr3 23106019 23106251 -194930907 + L1MB8 LINE L1 5936 6148 -30 591 218 155 0 chr3 23106255 23106397 -194930761 - MIR SINE MIR -86 176 13 210 378 24 8 chr3 23106536 23106663 -194930495 - MIR3 SINE MIR -42 166 38 200 235 99 25 chr3 23106796 23106877 -194930281 + MIR3 SINE MIR 115 201 -7 345 200 14 0 chr3 23107622 23107692 -194929466 - MLT1K LTR MaLR -373 215 145 199 158 88 18 chr3 23107786 23107843 -194929315 + MIR SINE MIR 81 141 -67 214 333 61 18 chr3 23107987 23108101 -194929057 - MIR SINE MIR -15 247 129 1352 162 50 14 chr3 23108101 23108379 -194928779 - L1MC1 LINE L1 -5 6328 6041 430 311 90 11 chr3 23108389 23108756 -194928402 - L2 LINE L2 -522 2792 2305 2079 145 0 0 chr3 23109050 23109353 -194927805 - AluSx SINE Alu -9 303 1 351 246 68 0 chr3 23109411 23109529 -194927629 - MER113 DNA MER1_type? -92 429 304 1279 157 8 58 chr3 23109532 23109774 -194927384 - AluJo SINE Alu 0 312 83 773 259 152 7 chr3 23109777 23110047 -194927111 - MER113 DNA MER1_type? -207 314 6 2338 90 0 0 chr3 23110946 23111235 -194925923 + AluSx SINE Alu 12 300 -12 654 294 6 6 chr3 23111247 23111427 -194925731 - MIR SINE MIR -49 213 34 189 0 0 0 chr3 23112303 23112324 -194924834 + (A)n Simple_repeat Simple_repeat 1 21 0 395 302 8 0 chr3 23112750 23112876 -194924282 - L3 LINE CR1 -71 1506 1380 462 262 84 21 chr3 23112896 23113087 -194924071 - L2 LINE L2 -64 3249 3047 180 323 71 0 chr3 23113085 23113184 -194923974 - L3 LINE CR1 -193 1384 1279 * 297 360 91 28 chr3 23113312 23113565 -194923593 - L3 LINE CR1 -563 1014 746 924 296 54 72 chr3 23113616 23114339 -194922819 + L1MC4a LINE L1 5255 5964 -1844 346 278 103 0 chr3 23114859 23114985 -194922173 + MER117 DNA MER1_type 4 142 -55 345 320 203 0 chr3 23115050 23115203 -194921955 - MER5A DNA MER1_type -2 187 4 259 265 271 0 chr3 23115264 23115415 -194921743 - MIR SINE MIR -10 252 61 233 299 23 23 chr3 23115986 23116073 -194921085 + MIR SINE MIR 62 148 -114 741 223 36 21 chr3 23116074 23116267 -194920891 - L2 LINE L2 0 3313 3118 323 172 16 0 chr3 23116606 23116670 -194920488 + LTR16A1 LTR ERVL 65 129 -328 446 244 62 12 chr3 23116724 23116884 -194920274 + LTR16A1 LTR ERVL 226 393 -64 512 218 0 0 chr3 23116960 23117047 -194920111 - MER81 DNA DNA -22 92 6 190 310 212 9 chr3 23117077 23117190 -194919968 - L2 LINE L2 0 3313 3178 202 189 0 0 chr3 23117422 23117459 -194919699 + MIR SINE MIR 103 139 -123 377 220 70 20 chr3 23117637 23117737 -194919421 - MIR SINE MIR -98 164 60 876 274 29 4 chr3 23117883 23118124 -194919034 + MIR SINE MIR 13 259 -3 255 179 54 0 chr3 23118154 23118210 -194918948 + L1ME LINE L1 5714 5772 -349 667 291 49 4 chr3 23118218 23118465 -194918693 + L1M4 LINE L1 4722 4979 -1167 182 277 62 0 chr3 23119192 23119257 -194917901 + MIR SINE MIR 106 174 -88 207 262 16 0 chr3 23119273 23119334 -194917824 - L2 LINE L2 -1 3271 3210 654 219 34 51 chr3 23119334 23119512 -194917646 + MER45A DNA AcHobo 3 177 -1 313 277 143 0 chr3 23119779 23119891 -194917267 + MIR SINE MIR 17 144 -118 183 238 0 0 chr3 23120262 23120304 -194916854 - L2 LINE L2 -15 3298 3257 401 355 24 5 chr3 23120317 23120528 -194916630 - MIR SINE MIR 0 262 48 247 242 275 0 chr3 23121770 23121890 -194915268 + MIR SINE MIR 106 258 -4 906 266 98 21 chr3 23121960 23122427 -194914731 - L2 LINE L2 -7 3306 2804 266 324 7 47 chr3 23122757 23122905 -194914253 + L2 LINE L2 2651 2792 -522 259 374 113 4 chr3 23124042 23124280 -194912878 + L2 LINE L2 2915 3178 -94 481 269 46 0 chr3 23124302 23124432 -194912726 - MIR SINE MIR -68 194 59 221 280 7 126 chr3 23125116 23125259 -194911899 - MIR SINE MIR -11 251 126 684 254 29 57 chr3 23125303 23125512 -194911646 + MIR SINE MIR 59 261 -1 180 178 267 0 chr3 23125514 23125559 -194911599 - MIR SINE MIR -68 140 84 259 200 0 0 chr3 23126162 23126212 -194910946 + L2 LINE L2 3264 3313 0 421 294 104 6 chr3 23126272 23126435 -194910723 + MIR SINE MIR 3 181 -81 390 254 123 0 chr3 23126969 23127083 -194910075 + MIR SINE MIR 93 220 -42 23 0 0 0 chr3 23127594 23127617 -194909541 + AT_rich Low_complexity Low_complexity 1 23 0 380 293 0 17 chr3 23127704 23127885 -194909273 + (CCA)n Simple_repeat Simple_repeat 1 178 0 520 298 6 6 chr3 23127990 23128168 -194908990 + (CCA)n Simple_repeat Simple_repeat 3 180 0 223 246 33 0 chr3 23128299 23128360 -194908798 - MIR3 SINE MIR -21 187 125 181 288 0 38 chr3 23128392 23128472 -194908686 + L2 LINE L2 2898 2974 -298 287 167 0 0 chr3 23128720 23128774 -194908384 + L2 LINE L2 3012 3065 -248 252 132 309 0 chr3 23128793 23128861 -194908297 - MER5A DNA MER1_type -34 155 67 239 107 0 53 chr3 23129365 23129440 -194907718 + (CCCCCG)n Simple_repeat Simple_repeat 3 73 0 42 36 0 0 chr3 23129491 23129547 -194907611 + GC_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 23129601 23129623 -194907535 + GC_rich Low_complexity Low_complexity 1 22 0 408 40 0 0 chr3 23130777 23130827 -194906331 + (TG)n Simple_repeat Simple_repeat 2 51 0 490 275 186 31 chr3 23131453 23131646 -194905512 + MIR SINE MIR 40 262 0 * 699 319 64 8 chr3 23131630 23131865 -194905293 - MIR SINE MIR 0 262 15 482 313 28 11 chr3 23131942 23132121 -194905037 - MIR SINE MIR -80 182 1 539 244 7 7 chr3 23132426 23132561 -194904597 - MIR3 SINE MIR -50 158 24 1958 256 136 26 chr3 23133303 23134344 -194902814 + L2 LINE L2 2087 3308 -5 266 316 35 18 chr3 23134594 23134708 -194902450 + MIR SINE MIR 32 147 -61 531 198 182 27 chr3 23135206 23135393 -194901765 - MIR SINE MIR -16 246 31 1343 166 42 7 chr3 23135744 23135974 -194901184 + MER33 DNA MER1_type 1 244 -2341 2170 138 0 0 chr3 23135974 23136271 -194900887 - AluSq SINE Alu -16 297 1 1343 166 42 7 chr3 23136271 23136324 -194900834 + MER33 DNA MER1_type 244 294 -30 272 279 0 0 chr3 23136781 23136849 -194900309 + L2 LINE L2 2991 3058 -255 392 282 5 38 chr3 23140402 23140569 -194896589 + MIR3 SINE MIR 3 169 -63 2533 88 0 0 chr3 23140595 23140903 -194896255 + AluSc SINE Alu 1 308 -1 541 364 21 4 chr3 23142045 23142281 -194894877 - L3 LINE CR1 -87 1490 1251 484 308 90 0 chr3 23142291 23142447 -194894711 - MIR3 SINE MIR -6 202 33 321 282 61 8 chr3 23142475 23142606 -194894552 - MER91C DNA MER1_type -2 138 1 246 236 14 42 chr3 23142718 23142790 -194894368 - MIR SINE MIR -19 243 174 263 225 166 33 chr3 23143311 23143425 -194893733 + MIR3 SINE MIR 39 167 -41 1075 222 138 11 chr3 23143451 23143807 -194893351 + MER113 DNA MER1_type? 46 446 -75 1535 151 6 130 chr3 23144099 23144444 -194892714 + AluJo SINE Alu 1 302 -10 182 188 0 0 chr3 23144512 23144544 -194892614 - MIR3 SINE MIR -48 160 129 330 169 0 0 chr3 23145007 23145072 -194892086 + CT-rich Low_complexity Low_complexity 1 65 0 711 257 174 5 chr3 23145205 23145423 -194891735 + MIR SINE MIR 8 262 0 181 286 32 32 chr3 23145421 23145484 -194891674 - MIR SINE MIR -155 107 45 * 319 346 33 26 chr3 23145829 23146017 -194891141 - MIR3 SINE MIR -54 154 12 1787 58 31 4 chr3 23146058 23146283 -194890875 - AluY SINE Alu -2 309 79 229 347 129 47 chr3 23147359 23147600 -194889558 - L2 LINE L2 -2 3270 2984 1835 128 103 0 chr3 23147600 23147873 -194889285 - AluSx SINE Alu -11 301 1 229 347 129 47 chr3 23147873 23148017 -194889141 - L2 LINE L2 -288 2984 2853 878 267 142 31 chr3 23149580 23150003 -194887155 - L2 LINE L2 0 3313 2844 671 329 31 13 chr3 23151054 23151282 -194885876 - MIR SINE MIR -14 248 17 206 295 115 0 chr3 23151367 23151445 -194885713 - MIR SINE MIR -67 141 55 254 247 79 56 chr3 23152249 23152338 -194884820 + L3 LINE CR1 1378 1468 -109 1131 191 17 33 chr3 23152998 23153239 -194883919 + MIR SINE MIR 7 243 -19 303 258 75 11 chr3 23153701 23153794 -194883364 - MIR SINE MIR -54 208 110 2087 126 0 7 chr3 23153995 23154309 -194882849 + AluSx SINE Alu 1 312 0 223 253 139 13 chr3 23154781 23154860 -194882298 - MIR SINE MIR -127 135 47 229 125 62 0 chr3 23155406 23155454 -194881704 - MIR SINE MIR -57 151 101 228 282 51 67 chr3 23155661 23155856 -194881302 - L2 LINE L2 -244 3028 2837 201 310 106 0 chr3 23156556 23156669 -194880489 + MIR3 SINE MIR 66 190 -18 1894 225 108 31 chr3 23156679 23157253 -194879905 - MLT1E2 LTR MaLR -8 618 1 879 239 40 78 chr3 23157269 23157591 -194879567 - MLT1E2-int LTR MaLR -2 1369 1060 313 339 25 8 chr3 23157967 23158085 -194879073 + MIR SINE MIR 67 186 -76 2313 71 7 3 chr3 23158430 23158746 -194878412 + AluY SINE Alu 1 317 0 1445 159 6 130 chr3 23158974 23159319 -194877839 + AluJo SINE Alu 1 302 -10 182 188 0 0 chr3 23159387 23159419 -194877739 - MIR3 SINE MIR -48 160 129 330 169 0 0 chr3 23159882 23159947 -194877211 + CT-rich Low_complexity Low_complexity 1 65 0 711 257 174 5 chr3 23160080 23160298 -194876860 + MIR SINE MIR 8 262 0 181 286 32 32 chr3 23160296 23160359 -194876799 - MIR SINE MIR -155 107 45 * 392 352 34 12 chr3 23160704 23160889 -194876269 - MIR3 SINE MIR -54 154 12 2460 87 0 6 chr3 23160930 23161242 -194875916 - AluSx SINE Alu -2 310 1 1160 226 25 31 chr3 23162028 23162351 -194874807 - L1ME LINE L1 -576 5573 5253 923 246 82 3 chr3 23162366 23162671 -194874487 - L1ME LINE L1 -922 5207 4879 527 293 11 21 chr3 23162694 23162885 -194874273 - L1ME LINE L1 -5928 191 3 208 174 0 65 chr3 23162989 23163035 -194874123 + MIR3 SINE MIR 112 154 -54 1094 228 166 15 chr3 23163102 23163497 -194873661 + MER41B LTR ERV1 173 476 -10 1704 202 90 12 chr3 23164266 23164676 -194872482 + MER45B DNA AcHobo 205 646 -394 420 379 59 39 chr3 23164683 23165192 -194871966 + L1M2 LINE L1 10 528 -6321 453 186 0 12 chr3 23165229 23165315 -194871843 + L1 LINE L1 4169 4253 -1893 300 335 24 29 chr3 23165605 23165775 -194871383 - L1ME LINE L1 -309 5812 5644 217 229 42 0 chr3 23167822 23167870 -194869288 + L2 LINE L2 3204 3253 -19 2288 91 0 29 chr3 23168307 23168615 -194868543 - AluSx SINE Alu -13 299 1 471 243 93 30 chr3 23168621 23168788 -194868370 - MIR SINE MIR -24 184 37 459 0 0 0 chr3 23168838 23168889 -194868269 + (TA)n Simple_repeat Simple_repeat 2 52 0 294 291 12 0 chr3 23168889 23168975 -194868183 - MER5A DNA MER1_type -53 136 50 616 304 22 6 chr3 23169235 23169416 -194867742 + MIR SINE MIR 38 221 -41 188 244 122 65 chr3 23170036 23170159 -194866999 - L3 LINE CR1 -109 1468 1339 332 293 93 0 chr3 23171597 23171737 -194865421 + MIR SINE MIR 108 260 -2 541 273 79 32 chr3 23171823 23172039 -194865119 - MIR SINE MIR -21 241 16 820 240 57 21 chr3 23172173 23172365 -194864793 - MIR SINE MIR -44 218 20 226 311 10 39 chr3 23172444 23172547 -194864611 + MIR3 SINE MIR 57 156 -52 21 71 0 0 chr3 23173267 23173309 -194863849 + AT_rich Low_complexity Low_complexity 1 42 0 207 203 43 72 chr3 23173370 23173439 -194863719 - L2 LINE L2 -202 3070 3004 474 284 12 15 chr3 23174089 23174296 -194862862 + MIR SINE MIR 78 253 -9 339 240 354 6 chr3 23174311 23174486 -194862672 + MIR SINE MIR 21 256 -6 191 143 0 0 chr3 23174856 23174884 -194862274 - MIR SINE MIR -63 145 118 215 255 39 0 chr3 23175348 23175399 -194861759 - L2 LINE L2 -211 3061 3009 429 172 172 10 chr3 23175645 23175744 -194861414 - MIR3 SINE MIR -49 159 45 791 248 9 51 chr3 23175851 23176065 -194861093 - MIR SINE MIR -56 206 2 3665 159 56 21 chr3 23176512 23177227 -194859931 + L1MB7 LINE L1 5445 6184 0 182 156 0 89 chr3 23177586 23177631 -194859527 - MIR3 SINE MIR -52 156 116 279 0 0 0 chr3 23178254 23178285 -194858873 + (T)n Simple_repeat Simple_repeat 1 31 0 299 227 136 0 chr3 23178714 23178780 -194858378 - MIR SINE MIR -107 155 81 1847 163 7 13 chr3 23178985 23179333 -194857825 - AluJo SINE Alu 0 312 1 7225 129 17 26 chr3 23179338 23181732 -194855426 - L1MA5A LINE L1 0 6297 3911 1537 169 41 37 chr3 23181771 23182066 -194855092 - AluJb SINE Alu -12 300 5 600 229 130 61 chr3 23182421 23182652 -194854506 - MIR SINE MIR -3 259 13 192 267 129 20 chr3 23182650 23182751 -194854407 - MIR3 SINE MIR -84 124 13 * 282 262 24 12 chr3 23182853 23182937 -194854221 + (TGGG)n Simple_repeat Simple_repeat 2 86 0 558 133 0 0 chr3 23182960 23183050 -194854108 + (TGGA)n Simple_repeat Simple_repeat 2 91 0 248 213 40 53 chr3 23183174 23183249 -194853909 + L2 LINE L2 3198 3271 -1 1077 130 44 143 chr3 23183736 23183890 -194853268 - L1MA7 LINE L1 -4 6287 6183 2013 156 0 9 chr3 23183890 23184205 -194852953 + AluSx SINE Alu 1 312 0 1077 130 44 143 chr3 23184205 23184375 -194852783 - L1MA7 LINE L1 -108 6183 5998 22 0 0 0 chr3 23185260 23185282 -194851876 + AT_rich Low_complexity Low_complexity 1 22 0 1561 205 0 17 chr3 23185309 23185606 -194851552 + AluJo SINE Alu 3 294 -18 269 284 193 0 chr3 23185928 23186016 -194851142 - MIR SINE MIR -139 123 19 384 329 80 13 chr3 23186462 23186687 -194850471 - L2 LINE L2 -557 2757 2518 209 260 151 0 chr3 23187875 23187948 -194849210 - L2 LINE L2 -559 2755 2672 383 268 21 10 chr3 23188009 23188106 -194849052 + L2 LINE L2 3168 3265 -7 238 270 67 0 chr3 23188532 23188621 -194848537 - L2 LINE L2 -326 2946 2852 266 200 220 30 chr3 23189145 23189245 -194847913 + MIR SINE MIR 34 152 -110 261 277 9 54 chr3 23190088 23190200 -194846958 + C-rich Low_complexity Low_complexity 6 112 0 784 257 32 18 chr3 23190211 23190429 -194846729 - MIR SINE MIR -29 233 13 223 285 146 16 chr3 23190810 23190933 -194846225 + MIR SINE MIR 121 259 -3 533 252 83 23 chr3 23191088 23191302 -194845856 + MIR SINE MIR 8 236 -26 470 347 77 4 chr3 23191899 23192147 -194845011 - L1MC4a LINE L1 -1943 5865 5600 386 222 52 185 chr3 23193399 23193628 -194843530 - L2 LINE L2 -4 3309 3051 2205 117 0 0 chr3 23193628 23193951 -194843207 + AluY SINE Alu 1 323 0 386 222 52 185 chr3 23193951 23194040 -194843118 - L2 LINE L2 -262 3051 2952 3362 195 11 1 chr3 23194040 23194696 -194842462 - L1MB3 LINE L1 -7 6176 5515 386 222 52 185 chr3 23194696 23194932 -194842226 - L2 LINE L2 -361 2952 2826 355 319 226 12 chr3 23195625 23195948 -194841210 + L2 LINE L2 2922 3313 0 294 265 191 34 chr3 23196534 23196681 -194840477 + MER5A DNA MER1_type 11 180 -9 4784 172 14 43 chr3 23196950 23197893 -194839265 - MER49 LTR ERV1 -2 921 7 205 321 50 13 chr3 23197966 23198125 -194839033 - L2 LINE L2 -209 3063 2899 2310 91 24 0 chr3 23198339 23198637 -194838521 - AluSx SINE Alu -7 305 1 1534 193 22 19 chr3 23198643 23198852 -194838306 + L1MB1 LINE L1 5736 5948 -241 1692 126 103 19 chr3 23198852 23199123 -194838035 + AluJo SINE Alu 1 294 -18 1534 193 22 19 chr3 23199123 23199224 -194837934 + L1MB1 LINE L1 5948 6047 -142 244 323 0 0 chr3 23199261 23199326 -194837832 - MIR SINE MIR -108 100 36 1625 196 50 12 chr3 23200931 23201137 -194836021 - Charlie1 DNA MER1_type 0 2761 2564 243 0 0 0 chr3 23201137 23201164 -194835994 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1625 196 50 12 chr3 23201164 23201361 -194835797 - Charlie1 DNA MER1_type -197 2564 2343 313 274 89 15 chr3 23202138 23202273 -194834885 - MIR3 SINE MIR -59 149 5 530 271 43 24 chr3 23202346 23202382 -194834776 - L2 LINE L2 -182 3131 3097 760 206 21 82 chr3 23202382 23202615 -194834543 + MER20 DNA MER1_type 1 219 0 530 271 43 24 chr3 23202615 23202785 -194834373 - L2 LINE L2 -216 3097 2921 312 316 33 33 chr3 23202823 23202975 -194834183 - MIR SINE MIR -110 152 1 512 247 64 82 chr3 23203111 23203341 -194833817 - MIR SINE MIR 0 262 36 2118 82 67 11 chr3 23203341 23203623 -194833535 - AluSg SINE Alu -12 298 1 512 247 64 82 chr3 23203623 23203659 -194833499 - MIR SINE MIR -226 36 1 209 33 33 0 chr3 23204182 23204212 -194832946 + (CTCA)n Simple_repeat Simple_repeat 2 32 0 476 288 157 36 chr3 23204237 23204511 -194832647 - L2 LINE L2 -50 3222 2916 447 235 145 66 chr3 23204595 23204681 -194832477 - MIR SINE MIR -17 245 167 1934 157 0 37 chr3 23204681 23205005 -194832153 + AluJo SINE Alu 1 312 0 447 235 145 66 chr3 23205005 23205084 -194832074 - MIR SINE MIR -95 167 67 230 238 0 16 chr3 23205708 23205771 -194831387 + (TG)n Simple_repeat Simple_repeat 1 62 0 336 228 129 0 chr3 23206344 23206445 -194830713 - MIR SINE MIR -65 143 30 2415 94 0 0 chr3 23207032 23207331 -194829827 + AluSx SINE Alu 1 299 -13 691 213 71 30 chr3 23207776 23207945 -194829213 + MER58C DNA MER1_type 40 215 0 268 317 19 0 chr3 23208005 23208109 -194829049 + (TCCA)n Simple_repeat Simple_repeat 1 106 0 245 208 13 0 chr3 23208135 23208212 -194828946 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 220 324 123 39 chr3 23208468 23208672 -194828486 - L2 LINE L2 -223 3049 2829 413 275 170 5 chr3 23208987 23209187 -194827971 + L2 LINE L2 2804 3036 -277 974 199 36 55 chr3 23209187 23209386 -194827772 - MLT1G1 LTR MaLR -26 557 367 1977 174 79 15 chr3 23209386 23209789 -194827369 + LTR3 LTR ERVK 1 429 -3 1856 174 67 11 chr3 23209802 23210159 -194826999 - LTR3 LTR ERVK -55 377 1 1861 226 10 13 chr3 23210162 23210551 -194826607 - MLT1G1 LTR MaLR -207 388 1 731 290 74 30 chr3 23210571 23210909 -194826249 - MLT1J LTR MaLR 0 511 159 318 256 157 31 chr3 23210958 23211213 -194825945 - MLT1H LTR MaLR -120 289 40 1527 221 62 44 chr3 23211322 23211819 -194825339 - L1M4 LINE L1 -3186 2960 2455 384 301 90 8 chr3 23211820 23211953 -194825205 + L2 LINE L2 3127 3270 -2 960 161 56 0 chr3 23212013 23212174 -194824984 + FAM SINE Alu 1 170 -5 289 324 110 45 chr3 23212209 23212499 -194824659 - L2 LINE L2 -61 3211 2903 1835 158 17 24 chr3 23212500 23212798 -194824360 + AluJo SINE Alu 1 296 -16 223 271 0 0 chr3 23212798 23212846 -194824312 - MER5B DNA MER1_type -54 124 77 184 379 68 15 chr3 23213270 23213402 -194823756 - L2 LINE L2 -157 3115 2977 833 191 21 46 chr3 23213449 23213643 -194823515 + MER5A DNA MER1_type 1 189 0 1906 250 149 16 chr3 23213814 23214594 -194822564 - L1ME3 LINE L1 -72 6090 5204 248 283 189 84 chr3 23214595 23214606 -194822552 + L2 LINE L2 2862 2870 -402 472 212 0 9 chr3 23214606 23214719 -194822439 - L1MB8 LINE L1 0 6178 6067 248 283 189 84 chr3 23214719 23215078 -194822080 + L2 LINE L2 2870 3271 -1 338 194 50 4 chr3 23215535 23215636 -194821522 - MIR SINE MIR -62 146 49 363 203 0 0 chr3 23216495 23216574 -194820584 + CT-rich Low_complexity Low_complexity 1 79 0 1804 171 26 16 chr3 23216810 23217115 -194820043 - AluJb SINE Alu -4 308 1 2370 112 0 3 chr3 23217152 23217464 -194819694 + AluSq SINE Alu 1 311 -2 4944 156 24 37 chr3 23217783 23217952 -194819206 - L1MA4 LINE L1 0 6300 6130 197 33 33 0 chr3 23217952 23217982 -194819176 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1749 177 18 3 chr3 23217982 23218264 -194818894 - AluJo SINE Alu -26 286 1 4944 156 24 37 chr3 23218264 23218359 -194818799 - L1MA4 LINE L1 -169 6131 6036 2334 111 0 9 chr3 23218359 23218674 -194818484 - AluSx SINE Alu 0 312 1 4944 156 24 37 chr3 23218674 23219122 -194818036 - L1MA4 LINE L1 -264 6036 5584 1646 131 32 12 chr3 23219122 23219374 -194817784 - AluJo SINE Alu -2 310 54 4944 156 24 37 chr3 23219374 23220156 -194817002 - L1MA4 LINE L1 -716 5584 4819 1634 184 28 0 chr3 23220178 23220460 -194816698 - AluJb SINE Alu 0 312 23 3292 144 15 7 chr3 23220476 23221087 -194816071 + L1 LINE L1 4216 4831 -1315 2407 94 0 0 chr3 23221088 23221387 -194815771 - AluSp SINE Alu -14 299 1 25 0 0 0 chr3 23221392 23221417 -194815741 + AT_rich Low_complexity Low_complexity 1 25 0 430 284 88 7 chr3 23222352 23222500 -194814658 - MIR SINE MIR -87 175 16 303 304 159 7 chr3 23223724 23224013 -194813145 + L2 LINE L2 1857 2189 -1125 1272 269 122 2 chr3 23224203 23224620 -194812538 - L2 LINE L2 0 3313 2847 217 248 284 18 chr3 23224706 23224815 -194812343 + L2 LINE L2 3133 3270 -2 304 258 30 60 chr3 23225425 23225553 -194811605 - MIR SINE MIR -44 164 39 182 239 156 28 chr3 23225796 23225905 -194811253 + MIR SINE MIR 28 150 -112 317 343 35 12 chr3 23225913 23226082 -194811076 + MER5A DNA MER1_type 16 188 -1 274 340 0 0 chr3 23226232 23226326 -194810832 + MER117 DNA MER1_type 68 161 -36 217 234 43 0 chr3 23226415 23226462 -194810696 - L2 LINE L2 -19 3294 3246 2355 116 0 0 chr3 23226616 23226917 -194810241 + AluSx SINE Alu 1 301 -11 797 175 31 6 chr3 23227690 23227850 -194809308 - L1MB3 LINE L1 -62 6121 5958 506 200 67 7 chr3 23227861 23227971 -194809187 - L1MC3 LINE L1 0 7785 7664 198 0 0 0 chr3 23227971 23227993 -194809165 + (TTA)n Simple_repeat Simple_repeat 3 24 0 506 200 67 7 chr3 23227993 23228017 -194809141 - L1MC3 LINE L1 -121 7664 7643 * 2926 28 0 6 chr3 23227995 23228351 -194808807 - L1PA3 LINE L1 -26 6129 5776 * 4863 200 28 27 chr3 23228333 23229447 -194807711 - L1MC3 LINE L1 -115 7670 6556 584 172 115 8 chr3 23229447 23229569 -194807589 - FLAM_C SINE Alu -7 136 2 600 178 139 0 chr3 23229569 23229743 -194807415 - L1MC3 LINE L1 -1224 6561 6415 * 678 260 60 42 chr3 23229736 23230067 -194807091 - L1MCc LINE L1 -4750 2372 2036 * 1460 256 74 50 chr3 23230065 23230848 -194806310 - L1MCc LINE L1 -4887 1536 920 1692 236 32 5 chr3 23231166 23231573 -194805585 - L1MCc LINE L1 -5988 435 18 785 127 25 45 chr3 23233062 23233219 -194803939 - Ricksha DNA DNA -1 3245 3092 2172 93 21 4 chr3 23233221 23233532 -194803626 + AluSg SINE Alu 1 316 0 324 161 0 0 chr3 23233538 23233600 -194803558 + (TTCA)n Simple_repeat Simple_repeat 4 65 0 285 29 0 0 chr3 23233718 23233752 -194803406 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 2138 90 32 0 chr3 23233752 23234029 -194803129 - AluSp SINE Alu -26 287 2 3314 143 11 55 chr3 23234029 23234511 -194802647 - Ricksha DNA DNA -145 3106 2657 2301 105 6 22 chr3 23234511 23234824 -194802334 - AluSg SINE Alu 0 310 3 3314 143 11 55 chr3 23234824 23234976 -194802182 - Ricksha DNA DNA -594 2657 2500 1113 190 22 9 chr3 23234974 23235182 -194801976 - Ricksha DNA DNA -844 410 206 * 462 252 96 0 chr3 23235182 23235297 -194801861 - FLAM_A SINE Alu -7 126 1 1113 190 22 9 chr3 23235297 23235402 -194801756 - Ricksha DNA DNA -1048 206 1 282 282 81 27 chr3 23235931 23236080 -194801078 - MIR3 SINE MIR -36 172 16 208 260 221 31 chr3 23236396 23236523 -194800635 - L2 LINE L2 -14 3258 3108 303 321 50 0 chr3 23236674 23236814 -194800344 - L2 LINE L2 -228 3044 2898 236 284 30 0 chr3 23237307 23237374 -194799784 - L3 LINE CR1 -106 1471 1403 2182 122 0 3 chr3 23237517 23237812 -194799346 + AluSg SINE Alu 1 294 -16 197 313 174 31 chr3 23237855 23238050 -194799108 + MIR SINE MIR 36 258 -4 296 261 14 11 chr3 23238244 23238349 -194798809 + MIR SINE MIR 40 147 -61 315 294 22 0 chr3 23239480 23239572 -194797586 + MIR SINE MIR 60 153 -109 565 235 37 0 chr3 23239710 23239846 -194797312 + MER58A DNA MER1_type 1 141 0 181 326 54 22 chr3 23240973 23241065 -194796093 - MIR SINE MIR -118 144 50 338 242 126 0 chr3 23241189 23241284 -194795874 - L2 LINE L2 -2 3311 3205 1797 256 24 28 chr3 23241314 23241846 -194795312 - L1ME2 LINE L1 -9 6155 5626 2220 154 104 9 chr3 23242418 23242871 -194794287 - L1MB3 LINE L1 0 6183 5688 1900 164 19 43 chr3 23244061 23244099 -194793059 - MLT1A1 LTR MaLR 0 365 328 2527 68 0 0 chr3 23244099 23244408 -194792750 + AluY SINE Alu 1 309 -2 1900 164 19 43 chr3 23244408 23244741 -194792417 - MLT1A1 LTR MaLR -37 328 3 826 159 0 0 chr3 23245141 23245267 -194791891 + FLAM_C SINE Alu 5 130 -3 222 241 111 28 chr3 23245511 23245619 -194791539 - MIR SINE MIR -144 118 2 214 239 42 14 chr3 23245642 23245713 -194791445 - L2 LINE L2 -181 3091 3019 220 229 33 16 chr3 23249083 23249144 -194788014 + CT-rich Low_complexity Low_complexity 5 66 0 2402 88 0 7 chr3 23249582 23249890 -194787268 + AluSc SINE Alu 1 306 -3 337 301 15 29 chr3 23250182 23250318 -194786840 - MIR SINE MIR -115 147 14 763 126 59 0 chr3 23252107 23252226 -194784932 + AluJb SINE Alu 2 127 -185 261 0 0 0 chr3 23252227 23252256 -194784902 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 1665 180 7 17 chr3 23252528 23252694 -194784464 - AluJo SINE Alu -15 297 134 2500 75 3 7 chr3 23252694 23253001 -194784157 - AluSc SINE Alu -3 306 1 1665 180 7 17 chr3 23253001 23253134 -194784024 - AluJo SINE Alu -178 134 1 25 51 0 0 chr3 23253147 23253186 -194783972 + AT_rich Low_complexity Low_complexity 1 39 0 2059 133 7 0 chr3 23253225 23253511 -194783647 + AluSx SINE Alu 1 288 -24 4575 201 82 39 chr3 23253682 23255089 -194782069 - L1ME2 LINE L1 0 6334 4569 1603 136 38 38 chr3 23255089 23255376 -194781782 + AluSx SINE Alu 11 297 -15 4575 201 82 39 chr3 23255376 23256072 -194781086 - L1ME2 LINE L1 -1765 4569 3905 21 0 0 0 chr3 23256094 23256115 -194781043 + AT_rich Low_complexity Low_complexity 1 21 0 646 225 0 0 chr3 23256130 23256250 -194780908 - FLAM_A SINE Alu -22 120 1 393 220 155 24 chr3 23256628 23256783 -194780375 + MIR SINE MIR 36 205 -57 2287 88 0 0 chr3 23256862 23257145 -194780013 - AluSx SINE Alu -29 283 1 1830 174 24 0 chr3 23260289 23260583 -194776575 + AluJo SINE Alu 1 301 -11 1425 151 132 8 chr3 23260929 23261180 -194775978 + AluJo SINE Alu 1 282 -30 1985 139 27 3 chr3 23261600 23261901 -194775257 - AluJb SINE Alu 0 312 5 367 270 88 0 chr3 23262686 23262823 -194774335 - MIR SINE MIR -51 211 63 1332 117 68 9 chr3 23263382 23263604 -194773554 - MER46A DNA MER2_type 0 236 2 197 301 19 39 chr3 23264086 23264189 -194772969 - MER5B DNA MER1_type -69 109 9 222 308 10 39 chr3 23264435 23264539 -194772619 - MER5B DNA MER1_type -69 109 9 243 156 429 0 chr3 23266089 23266166 -194770992 + MLT1G3 LTR MaLR 220 329 -201 237 243 57 0 chr3 23266236 23266306 -194770852 + MLT1G3 LTR MaLR 520 593 -2 299 326 62 31 chr3 23267355 23267484 -194769674 + MIR SINE MIR 64 196 -66 1657 155 38 35 chr3 23267551 23267841 -194769317 - AluJb SINE Alu -21 291 1 241 299 91 0 chr3 23268530 23268607 -194768551 - L2 LINE L2 -3 3269 3186 252 320 19 10 chr3 23268803 23268906 -194768252 + MER5B DNA MER1_type 1 104 -74 185 330 85 9 chr3 23269353 23269459 -194767699 + MIR SINE MIR 10 123 -139 835 111 0 76 chr3 23269677 23269791 -194767367 + AluJo/FLAM SINE Alu 1 103 -199 2065 113 20 10 chr3 23269791 23270084 -194767074 - AluSq SINE Alu -17 296 1 835 111 0 76 chr3 23270084 23270113 -194767045 + AluJo/FLAM SINE Alu 103 133 -169 8380 97 60 11 chr3 23270184 23271402 -194765756 - HSMAR1 DNA Mariner 0 1287 11 21 0 0 0 chr3 23272547 23272568 -194764590 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 23272645 23272669 -194764489 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 23272717 23272742 -194764416 + GC_rich Low_complexity Low_complexity 1 25 0 228 218 8 73 chr3 23272791 23272915 -194764243 + C-rich Low_complexity Low_complexity 5 120 0 27 62 0 0 chr3 23272925 23272973 -194764185 + GC_rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr3 23273036 23273082 -194764076 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 23273138 23273159 -194763999 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 23273169 23273211 -194763947 + GC_rich Low_complexity Low_complexity 1 42 0 233 141 0 59 chr3 23273657 23273742 -194763416 + (CGGGGG)n Simple_repeat Simple_repeat 3 82 0 387 288 250 16 chr3 23274224 23274540 -194762618 - L2 LINE L2 -52 3261 2872 231 191 101 45 chr3 23274763 23274852 -194762306 - L2 LINE L2 -5 3267 3174 296 51 0 26 chr3 23274868 23274931 -194762227 - Alu SINE Alu 0 309 248 485 265 118 6 chr3 23275049 23275219 -194761939 + MIR SINE MIR 74 262 0 350 274 236 27 chr3 23275649 23275908 -194761250 + L2 LINE L2 2997 3309 -4 21 107 0 0 chr3 23276504 23276588 -194760570 + AT_rich Low_complexity Low_complexity 1 84 0 2339 76 16 0 chr3 23276853 23277156 -194760002 - AluY SINE Alu -2 309 2 202 254 149 0 chr3 23277597 23277664 -194759494 - L3 LINE CR1 -4 1573 1497 2442 74 0 3 chr3 23278725 23279023 -194758135 + AluSg SINE Alu 1 297 -13 34 42 0 0 chr3 23279355 23279403 -194757755 + AT_rich Low_complexity Low_complexity 1 48 0 24 85 0 0 chr3 23279440 23279499 -194757659 + AT_rich Low_complexity Low_complexity 1 59 0 1271 230 103 59 chr3 23279519 23279946 -194757212 + L1ME3A LINE L1 5671 6122 -48 2020 132 3 3 chr3 23279946 23280242 -194756916 - AluSx SINE Alu -16 296 1 1271 230 103 59 chr3 23280242 23280288 -194756870 + L1ME3A LINE L1 6122 6165 -5 312 305 58 13 chr3 23280626 23280780 -194756378 + MIR SINE MIR 29 189 -73 2165 117 13 3 chr3 23281642 23281951 -194755207 - AluSp SINE Alu -1 312 1 316 128 0 0 chr3 23282696 23282743 -194754415 - FLAM SINE Alu -2 131 85 322 335 95 62 chr3 23283002 23283390 -194753768 + L2 LINE L2 2851 3251 -21 2313 84 0 0 chr3 23283807 23284092 -194753066 + AluSc SINE Alu 1 285 -24 773 280 52 70 chr3 23284840 23285422 -194751736 + L1M4 LINE L1 4698 5268 -878 180 0 0 0 chr3 23287767 23287787 -194749371 + (T)n Simple_repeat Simple_repeat 1 20 0 228 304 51 13 chr3 23287968 23288047 -194749111 - L2 LINE L2 -5 3267 3186 439 288 74 6 chr3 23288368 23288531 -194748627 - MIR SINE MIR -74 188 15 2195 59 7 7 chr3 23288573 23288846 -194748312 - AluY SINE Alu -3 308 36 23 0 0 0 chr3 23289093 23289116 -194748042 + AT_rich Low_complexity Low_complexity 1 23 0 4665 137 62 32 chr3 23289167 23289617 -194747541 - MER6 DNA MER2_type -4 861 375 2295 79 6 29 chr3 23289617 23289933 -194747225 - AluY SINE Alu -2 309 1 4665 137 62 32 chr3 23289933 23290288 -194746870 - MER6 DNA MER2_type -490 375 32 216 0 0 0 chr3 23290634 23290658 -194746500 + (A)n Simple_repeat Simple_repeat 1 24 0 2231 100 0 22 chr3 23290761 23291080 -194746078 - AluSq SINE Alu -1 312 1 1061 141 5 32 chr3 23291519 23291704 -194745454 + AluJo SINE Alu 108 287 -25 461 227 0 0 chr3 23291924 23292012 -194745146 + MIR SINE MIR 1 88 -174 1558 248 22 2 chr3 23292012 23292476 -194744682 - L1M4 LINE L1 -2533 3613 3141 647 183 25 0 chr3 23292477 23292597 -194744561 + L1M4 LINE L1 5428 5550 -634 7970 11 5 1 chr3 23292841 23294256 -194742902 + L1PA3 LINE L1 4734 6151 -4 2259 114 10 0 chr3 23294352 23294651 -194742507 - AluSg SINE Alu -8 302 1 278 265 117 85 chr3 23295143 23295366 -194741792 - HAL1 LINE L1 0 2507 2278 4149 132 54 36 chr3 23295426 23295947 -194741211 - L1MB3 LINE L1 -2 6181 5640 1948 148 53 31 chr3 23295947 23296225 -194740933 + MER47A DNA MER2_type 1 290 -2033 2319 109 3 0 chr3 23296225 23296528 -194740630 - AluSx SINE Alu -8 304 1 1948 148 53 31 chr3 23296528 23296607 -194740551 + MER47A DNA MER2_type 290 366 0 4149 132 54 36 chr3 23296607 23296868 -194740290 - L1MB3 LINE L1 -543 5640 5385 2528 77 0 3 chr3 23296910 23297220 -194739938 - AluSp SINE Alu -4 309 1 2086 146 3 0 chr3 23297275 23297584 -194739574 - AluSx SINE Alu -2 310 1 2278 203 24 34 chr3 23297584 23297737 -194739421 - L1MB3 LINE L1 -750 5396 5243 2621 140 34 0 chr3 23297737 23298151 -194739007 - MSTA LTR MaLR 0 428 1 2278 203 24 34 chr3 23298151 23298347 -194738811 - L1MB3 LINE L1 -903 5243 5047 1660 172 7 28 chr3 23298347 23298638 -194738520 - AluJo SINE Alu -21 291 7 2278 203 24 34 chr3 23298638 23298883 -194738275 - L1MB3 LINE L1 -1099 5047 4807 289 94 16 62 chr3 23298882 23298946 -194738212 - L1MB2 LINE L1 0 6171 6111 * 429 279 10 0 chr3 23298947 23299051 -194738107 - Tigger5 DNA MER2_type 0 2323 2219 268 200 40 0 chr3 23299046 23299096 -194738062 - Tigger5 DNA MER2_type -2270 53 2 * 1361 142 61 4 chr3 23299098 23299345 -194737813 - L1MB2 LINE L1 -59 6112 5852 5289 202 36 69 chr3 23299347 23299708 -194737450 - L1MB3 LINE L1 -1340 4806 4435 2214 128 7 0 chr3 23299708 23300014 -194737144 - AluSx SINE Alu -4 308 1 5289 202 36 69 chr3 23300014 23301051 -194736107 - L1MB3 LINE L1 -1711 4435 3463 879 158 0 0 chr3 23301051 23301184 -194735974 - FLAM_C SINE Alu 0 133 1 5289 202 36 69 chr3 23301184 23301353 -194735805 - L1MB3 LINE L1 -2683 3463 3290 229 209 70 35 chr3 23301388 23301474 -194735684 - HAL1 LINE L1 -289 2218 2130 1695 255 45 44 chr3 23301492 23302313 -194734845 - HAL1 LINE L1 -525 1982 1128 394 250 122 0 chr3 23302316 23302464 -194734694 + MIR SINE MIR 53 218 -44 482 244 98 33 chr3 23302516 23302790 -194734368 - HAL1 LINE L1 -1398 1109 818 1925 135 57 3 chr3 23302793 23303089 -194734069 + AluSx SINE Alu 1 312 0 267 145 158 53 chr3 23303106 23303182 -194733976 + AluJ/FRAM SINE Alu 219 302 0 1837 150 85 18 chr3 23303306 23303646 -194733512 - MER47A DNA MER2_type 0 366 4 531 284 74 65 chr3 23304021 23304373 -194732785 - HAL1 LINE L1 -2152 355 1 725 307 77 33 chr3 23304452 23305013 -194732145 - L2 LINE L2 0 3313 2714 1546 179 7 48 chr3 23305282 23305573 -194731585 - AluJo SINE Alu -33 279 1 194 235 99 37 chr3 23306208 23306289 -194730869 - MIR SINE MIR -1 261 176 756 188 0 8 chr3 23306299 23306432 -194730726 + AluJb SINE Alu 5 136 -176 2428 86 0 0 chr3 23306432 23306734 -194730424 + AluY SINE Alu 1 302 -9 1999 179 32 23 chr3 23306738 23307205 -194729953 - MLT2A2 LTR ERVL -66 488 8 1088 178 9 28 chr3 23307206 23307419 -194729739 - AluJo SINE Alu -41 271 63 1405 247 176 61 chr3 23307443 23308078 -194729080 - L1M4 LINE L1 -1495 4651 4090 2169 126 53 0 chr3 23308078 23308420 -194728738 - L1MA3 LINE L1 0 6305 5946 1405 247 176 61 chr3 23308420 23308573 -194728585 - L1M4 LINE L1 -2056 4090 3956 297 0 0 0 chr3 23308573 23308606 -194728552 + (CA)n Simple_repeat Simple_repeat 2 34 0 1405 247 176 61 chr3 23308606 23308987 -194728171 - L1M4 LINE L1 -2190 3956 3620 2476 87 3 0 chr3 23308987 23309298 -194727860 - AluSp SINE Alu -1 312 1 1405 247 176 61 chr3 23309298 23309588 -194727570 - L1M4 LINE L1 -2526 3620 2974 * 3262 193 48 8 chr3 23309581 23310525 -194726633 - L1ME1 LINE L1 -175 5991 5010 318 274 38 65 chr3 23310866 23311052 -194726106 - L1ME LINE L1 -349 5772 5592 698 235 60 20 chr3 23311178 23311429 -194725729 - MER20B DNA MER1_type -1 782 522 1890 176 0 0 chr3 23312186 23312493 -194724665 - AluJo SINE Alu -5 307 1 563 280 80 40 chr3 23312665 23312915 -194724243 + L2 LINE L2 3054 3313 0 272 233 123 14 chr3 23313235 23313308 -194723850 - LTR67 LTR ERVL -104 453 373 187 352 56 0 chr3 23314258 23314329 -194722829 + MIR SINE MIR 38 112 -96 1560 164 24 45 chr3 23314623 23314760 -194722398 + AluJb SINE Alu 1 139 -173 2205 105 30 3 chr3 23314760 23315064 -194722094 + AluSq SINE Alu 1 312 -1 1560 164 24 45 chr3 23315064 23315213 -194721945 + AluJb SINE Alu 139 281 -31 1741 170 6 25 chr3 23316864 23317182 -194719976 - AluJo SINE Alu 0 312 1 190 234 0 0 chr3 23317606 23317653 -194719505 - L2 LINE L2 -5 3308 3262 224 276 0 58 chr3 23317691 23317778 -194719380 - L2 LINE L2 -160 3112 3031 2403 96 0 0 chr3 23318282 23318583 -194718575 + AluSq SINE Alu 1 301 -12 337 285 75 65 chr3 23319308 23319522 -194717636 - L1ME3A LINE L1 -5 6165 5950 2253 123 0 0 chr3 23319549 23319850 -194717308 - AluSc SINE Alu -8 301 1 23 0 0 0 chr3 23319854 23319877 -194717281 + AT_rich Low_complexity Low_complexity 1 23 0 7771 92 64 12 chr3 23319998 23321121 -194716037 - HSMAR1 DNA Mariner -96 1191 11 21 0 0 0 chr3 23322266 23322287 -194714871 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 23322364 23322388 -194714770 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 23322436 23322461 -194714697 + GC_rich Low_complexity Low_complexity 1 25 0 228 218 8 73 chr3 23322510 23322634 -194714524 + C-rich Low_complexity Low_complexity 5 120 0 27 62 0 0 chr3 23322644 23322692 -194714466 + GC_rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr3 23322755 23322801 -194714357 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 23322857 23322878 -194714280 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 23322888 23322930 -194714228 + GC_rich Low_complexity Low_complexity 1 42 0 233 141 0 59 chr3 23323376 23323461 -194713697 + (CGGGGG)n Simple_repeat Simple_repeat 3 82 0 387 288 250 16 chr3 23323943 23324259 -194712899 - L2 LINE L2 -52 3261 2872 231 191 101 45 chr3 23324482 23324571 -194712587 - L2 LINE L2 -5 3267 3174 296 51 0 26 chr3 23324587 23324650 -194712508 - Alu SINE Alu 0 309 248 461 241 131 7 chr3 23324768 23324913 -194712245 + MIR SINE MIR 74 236 -26 350 274 236 27 chr3 23325368 23325627 -194711531 + L2 LINE L2 2997 3309 -4 21 107 0 0 chr3 23326223 23326307 -194710851 + AT_rich Low_complexity Low_complexity 1 84 0 2339 76 16 0 chr3 23326572 23326875 -194710283 - AluY SINE Alu -2 309 2 202 254 149 0 chr3 23327316 23327383 -194709775 - L3 LINE CR1 -4 1573 1497 2442 74 0 3 chr3 23328444 23328742 -194708416 + AluSg SINE Alu 1 297 -13 34 42 0 0 chr3 23329074 23329122 -194708036 + AT_rich Low_complexity Low_complexity 1 48 0 24 85 0 0 chr3 23329159 23329218 -194707940 + AT_rich Low_complexity Low_complexity 1 59 0 1231 232 115 40 chr3 23329238 23329664 -194707494 + L1ME3A LINE L1 5671 6128 -42 2030 128 3 7 chr3 23329665 23329962 -194707196 - AluSx SINE Alu -16 296 1 912 94 39 0 chr3 23329967 23330094 -194707064 - AluSq/x SINE Alu -181 132 1 307 252 65 24 chr3 23330110 23330233 -194706925 + MIR SINE MIR 75 202 -60 1889 142 11 3 chr3 23330414 23330696 -194706462 - AluJo SINE Alu -28 284 1 225 0 0 0 chr3 23332042 23332067 -194705091 + (A)n Simple_repeat Simple_repeat 1 25 0 337 87 32 16 chr3 23332359 23332427 -194704731 - MIR SINE MIR -66 142 73 2151 123 7 3 chr3 23333677 23333970 -194703188 + AluSx SINE Alu 1 294 -18 1376 143 0 78 chr3 23334066 23334310 -194702848 + AluJo SINE Alu 33 257 -55 212 196 0 59 chr3 23334482 23334533 -194702625 + L3 LINE CR1 1290 1337 -240 2083 145 3 0 chr3 23334857 23335161 -194701997 - AluSx SINE Alu -7 305 1 855 144 0 0 chr3 23335545 23335663 -194701495 - AluSq/x SINE Alu -193 119 2 294 151 0 58 chr3 23335740 23335826 -194701332 + CT-rich Low_complexity Low_complexity 4 84 0 542 217 7 43 chr3 23335829 23335855 -194701303 - FLAM_C SINE Alu -169 133 108 484 29 43 0 chr3 23335855 23335924 -194701234 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 542 217 7 43 chr3 23335924 23336035 -194701123 - FLAM_C SINE Alu -194 108 1 346 289 47 8 chr3 23336040 23336168 -194700990 - MIR SINE MIR -74 188 56 879 114 0 15 chr3 23336466 23336597 -194700561 + FLAM_C SINE Alu 5 133 0 1605 170 69 58 chr3 23337216 23337547 -194699611 + L1MD2 LINE L1 5093 5419 -940 2027 130 27 3 chr3 23337547 23337840 -194699318 + AluSx SINE Alu 1 300 -12 1704 169 0 0 chr3 23337841 23338114 -194699044 + AluJo SINE Alu 33 305 -7 1605 170 69 58 chr3 23338114 23338341 -194698817 + L1MD2 LINE L1 5418 6169 -190 * 1697 143 6 57 chr3 23338328 23338408 -194698750 + L1MB8 LINE L1 5727 5809 -369 2112 108 0 39 chr3 23338408 23338542 -194698616 + AluSq SINE Alu 1 139 -174 2367 76 0 3 chr3 23338542 23338832 -194698326 + AluSg SINE Alu 1 289 -21 2112 108 0 39 chr3 23338832 23339002 -194698156 + AluSq SINE Alu 139 293 -20 1697 143 6 57 chr3 23339002 23339257 -194697901 + L1MB8 LINE L1 5809 6045 -133 983 137 0 14 chr3 23339936 23340082 -194697076 - AluJb SINE Alu -31 281 138 2334 112 26 0 chr3 23340085 23340389 -194696769 - AluSq SINE Alu -1 312 1 563 221 0 38 chr3 23340523 23340654 -194696504 + AluSg/x SINE Alu 87 212 -100 203 290 0 16 chr3 23340850 23340912 -194696246 + CT-rich Low_complexity Low_complexity 3 63 0 766 221 50 15 chr3 23341140 23341339 -194695819 - MIR SINE MIR -49 213 8 1111 170 13 52 chr3 23341478 23341707 -194695451 - AluJo SINE Alu -15 297 78 2218 113 3 3 chr3 23343236 23343536 -194693622 + AluSx SINE Alu 2 301 -11 2432 135 107 9 chr3 23344424 23344862 -194692296 + L1MB3 LINE L1 5703 6183 0 354 263 51 34 chr3 23346252 23346370 -194690788 + L2 LINE L2 3133 3252 -20 2121 103 7 7 chr3 23346811 23347112 -194690046 + AluY SINE Alu 1 301 -10 2720 181 60 22 chr3 23347112 23347374 -194689784 + L1MB7 LINE L1 4494 4744 -1402 3578 140 29 27 chr3 23347374 23348039 -194689119 + L1MA7 LINE L1 5621 6286 -5 2720 181 60 22 chr3 23348039 23348421 -194688737 + L1MB7 LINE L1 4744 5163 -983 819 214 0 42 chr3 23348421 23348589 -194688569 - AluJb SINE Alu -21 291 131 2265 87 3 0 chr3 23348592 23348892 -194688266 - AluSp SINE Alu -12 301 1 1429 164 38 24 chr3 23348902 23349194 -194687964 - AluJb SINE Alu -13 299 4 4700 157 80 6 chr3 23349199 23350142 -194687016 + L1MB7 LINE L1 5153 6165 -19 1864 150 49 15 chr3 23350543 23350870 -194686288 - MER7A DNA MER2_type 0 346 11 2172 76 28 0 chr3 23351065 23351356 -194685802 + AluY SINE Alu 1 299 -12 3220 165 66 10 chr3 23351617 23352233 -194684925 + L1MB8 LINE L1 5010 5692 -486 216 0 0 0 chr3 23352233 23352257 -194684901 + (CA)n Simple_repeat Simple_repeat 2 25 0 3220 165 66 10 chr3 23352257 23352507 -194684651 + L1MB8 LINE L1 5692 5926 -252 1214 145 23 9 chr3 23352675 23352896 -194684262 - AluJo SINE Alu -2 310 87 2033 108 28 0 chr3 23353031 23353318 -194683840 + AluSx SINE Alu 1 295 -17 282 29 0 0 chr3 23353397 23353432 -194683726 + (TG)n Simple_repeat Simple_repeat 2 36 0 708 207 0 21 chr3 23353432 23353563 -194683595 - FLAM_C SINE Alu -181 131 2 690 210 0 8 chr3 23353654 23353778 -194683380 + FLAM_A SINE Alu 1 123 -10 2175 87 0 34 chr3 23356060 23356381 -194680777 + AluSg SINE Alu 1 310 0 238 356 56 23 chr3 23357011 23357227 -194679931 - MARNA DNA Mariner -58 528 306 181 331 0 98 chr3 23357428 23357561 -194679597 + L2 LINE L2 2915 3034 -238 346 184 55 80 chr3 23357662 23357763 -194679395 - L1ME4a LINE L1 -4 6117 6020 1700 184 0 10 chr3 23357763 23358068 -194679090 + AluJb SINE Alu 1 302 -10 346 184 55 80 chr3 23358068 23358129 -194679029 - L1ME4a LINE L1 -101 6020 5959 288 181 178 10 chr3 23358480 23358607 -194678551 - HAL1b LINE L1 -31 1317 1191 380 355 35 60 chr3 23358620 23358902 -194678256 - L1MC4a LINE L1 -1929 5879 5605 239 222 0 67 chr3 23363246 23363336 -194673822 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 828 145 0 0 chr3 23365966 23366090 -194671068 - AluJb SINE Alu -31 281 158 1801 134 17 7 chr3 23367386 23367676 -194669482 - AluJb SINE Alu -19 293 1 1937 203 24 36 chr3 23369879 23370168 -194666990 + L1ME LINE L1 4502 4784 -1362 1459 116 175 4 chr3 23370168 23370419 -194666739 + AluSg1 SINE Alu 1 294 -15 1937 203 24 36 chr3 23370419 23370622 -194666536 + L1ME LINE L1 4784 4988 -1158 828 110 0 0 chr3 23370627 23370745 -194666413 + AluSg/x SINE Alu 175 292 -20 1233 178 108 53 chr3 23370749 23371074 -194666084 + L1ME LINE L1 4987 5359 -807 2338 122 34 53 chr3 23371074 23371510 -194665648 - MSTA LTR MaLR 0 428 1 1233 178 108 53 chr3 23371510 23371733 -194665425 + L1ME LINE L1 5359 5568 -598 476 143 143 43 chr3 23371730 23371870 -194665288 + L1ME2 LINE L1 4133 4286 -1860 * 268 128 64 0 chr3 23371882 23371929 -194665229 + FAM SINE Alu 119 168 -11 977 227 103 46 chr3 23371935 23372125 -194665033 + L1ME2 LINE L1 5130 5308 -856 2485 34 0 7 chr3 23372125 23372420 -194664738 + AluY SINE Alu 1 293 -18 977 227 103 46 chr3 23372420 23372554 -194664604 + L1ME2 LINE L1 5308 5433 -731 1718 200 101 21 chr3 23372554 23373020 -194664138 + MLT1D LTR MaLR 3 505 0 977 227 103 46 chr3 23373020 23373255 -194663903 + L1ME2 LINE L1 5433 5725 -439 1031 237 68 61 chr3 23373573 23373999 -194663159 + L1ME2 LINE L1 5735 6163 -1 335 255 50 96 chr3 23374027 23374083 -194663075 + L2 LINE L2 3085 3142 -171 1674 152 32 0 chr3 23374083 23374366 -194662792 - AluJb SINE Alu -15 297 6 335 255 50 96 chr3 23374366 23374387 -194662771 + L2 LINE L2 3142 3162 -151 2395 64 0 0 chr3 23374387 23374684 -194662474 - AluY SINE Alu -14 297 1 335 255 50 96 chr3 23374684 23374844 -194662314 + L2 LINE L2 3162 3312 -1 221 244 89 44 chr3 23375126 23375216 -194661942 - L2 LINE L2 -175 3097 3004 316 248 68 8 chr3 23375946 23376063 -194661095 + L1ME2 LINE L1 6039 6162 -2 694 241 52 94 chr3 23376152 23376427 -194660731 + HAL1 LINE L1 2042 2327 -180 1883 149 10 19 chr3 23376427 23376736 -194660422 + AluJo SINE Alu 1 306 -6 694 241 52 94 chr3 23376736 23376798 -194660360 + HAL1 LINE L1 2327 2364 -143 2387 61 3 0 chr3 23376798 23377095 -194660063 + AluY SINE Alu 2 299 -12 694 241 52 94 chr3 23377095 23377138 -194660020 + HAL1 LINE L1 2364 2407 -100 5462 79 27 15 chr3 23377380 23378236 -194658922 + SVA Other Other 1 866 -520 6318 59 33 40 chr3 23378295 23379258 -194657900 + SVA Other Other 430 1386 0 251 237 272 43 chr3 23379262 23379419 -194657739 - MIR SINE MIR 0 262 73 331 182 121 0 chr3 23379862 23379961 -194657197 + MER102a DNA MER1_type 83 193 -137 260 266 25 0 chr3 23379973 23380052 -194657106 + MER102a DNA MER1_type 220 300 -30 233 290 0 0 chr3 23380379 23380441 -194656717 + L2 LINE L2 3235 3296 -17 282 149 53 96 chr3 23380671 23380765 -194656393 + MIR SINE MIR 60 149 -113 24 0 0 0 chr3 23381065 23381089 -194656069 + GC_rich Low_complexity Low_complexity 1 24 0 1931 108 24 0 chr3 23381985 23382272 -194654886 + AluSx SINE Alu 1 294 -18 323 206 92 11 chr3 23382290 23382377 -194654781 - L1MCa LINE L1 -4592 1834 1597 1729 114 4 8 chr3 23382385 23382640 -194654518 - AluSp SINE Alu -59 254 1 1214 145 23 9 chr3 23382774 23382995 -194654163 + AluJo SINE Alu 87 310 -2 1866 104 24 17 chr3 23383285 23383439 -194653719 - AluSx SINE Alu -23 289 131 2042 118 0 3 chr3 23383439 23383735 -194653423 - AluSx SINE Alu -17 295 1 1866 104 24 17 chr3 23383735 23383867 -194653291 - AluSx SINE Alu -181 131 1 368 252 65 24 chr3 23383883 23384006 -194653152 + MIR SINE MIR 75 202 -60 1768 142 11 3 chr3 23384187 23384469 -194652689 - AluJo SINE Alu -28 284 1 225 0 0 0 chr3 23385815 23385840 -194651318 + (A)n Simple_repeat Simple_repeat 1 25 0 368 207 54 54 chr3 23386083 23386262 -194650896 - MIR3 SINE MIR -18 190 12 2024 123 7 3 chr3 23387450 23387743 -194649415 + AluSx SINE Alu 1 294 -18 1280 143 0 78 chr3 23387839 23388083 -194649075 + AluJo SINE Alu 33 257 -55 232 196 0 59 chr3 23388255 23388306 -194648852 + L3 LINE CR1 1290 1337 -240 1961 145 3 0 chr3 23388630 23388934 -194648224 - AluSx SINE Alu -7 305 1 803 144 0 0 chr3 23389318 23389436 -194647722 - AluSq/x SINE Alu -194 119 2 294 151 0 58 chr3 23389513 23389599 -194647559 + CT-rich Low_complexity Low_complexity 4 84 0 548 217 7 43 chr3 23389602 23389628 -194647530 - FLAM_C SINE Alu -169 133 108 484 29 43 0 chr3 23389628 23389697 -194647461 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 548 217 7 43 chr3 23389697 23389808 -194647350 - FLAM_C SINE Alu -194 108 1 394 273 47 8 chr3 23389813 23389941 -194647217 - MIR SINE MIR -74 188 56 884 114 0 15 chr3 23390239 23390370 -194646788 + FLAM_C SINE Alu 5 133 0 1598 170 69 58 chr3 23390989 23391320 -194645838 + L1MD2 LINE L1 5093 5419 -940 1908 130 27 3 chr3 23391320 23391613 -194645545 + AluSx SINE Alu 1 300 -12 1536 179 0 0 chr3 23391614 23391887 -194645271 + AluJo SINE Alu 33 305 -7 1598 170 69 58 chr3 23391887 23392114 -194645044 + L1MD2 LINE L1 5418 6169 -190 2330 143 11 44 chr3 23392114 23392181 -194644977 + L1MB7 LINE L1 5727 5795 -389 2015 115 0 10 chr3 23392181 23392315 -194644843 + AluSq SINE Alu 1 135 -178 2261 87 0 0 chr3 23392315 23392613 -194644545 + AluSg SINE Alu 1 298 -12 2015 115 0 10 chr3 23392613 23392774 -194644384 + AluSq SINE Alu 135 293 -20 2330 143 11 44 chr3 23392774 23393147 -194644011 + L1MB7 LINE L1 5795 6165 -19 1867 153 0 13 chr3 23393157 23393471 -194643687 + AluJb SINE Alu 1 310 -2 470 245 6 74 chr3 23393698 23393861 -194643297 + L1MD2 LINE L1 6191 6342 -17 208 283 19 0 chr3 23394073 23394126 -194643032 - MIR SINE MIR -2 260 207 766 176 23 0 chr3 23396605 23396736 -194640422 - AluJo SINE Alu -178 134 1 1874 114 83 14 chr3 23396799 23397089 -194640069 + AluSg SINE Alu 1 310 0 4251 150 52 20 chr3 23399425 23400239 -194636919 - L1MA6 LINE L1 0 6300 5461 1139 140 22 11 chr3 23400239 23400417 -194636741 - AluSg/x SINE Alu -13 297 118 2343 102 7 3 chr3 23400440 23400745 -194636413 - AluSq SINE Alu -7 306 1 872 133 0 0 chr3 23400778 23400898 -194636260 - AluSp SINE Alu -193 120 1 1224 116 43 5 chr3 23400898 23401137 -194636021 - L1MA6 LINE L1 -743 5403 5229 2241 114 0 0 chr3 23401183 23401472 -194635686 + AluSg SINE Alu 1 289 -21 2218 113 3 3 chr3 23403379 23403679 -194633479 + AluSx SINE Alu 2 301 -11 2432 135 107 9 chr3 23404567 23405005 -194632153 + L1MB3 LINE L1 5703 6183 0 314 262 48 29 chr3 23406395 23406498 -194630660 + L2 LINE L2 3133 3237 -35 2196 120 3 0 chr3 23406954 23407253 -194629905 + AluSq SINE Alu 1 300 -13 606 304 104 25 chr3 23407373 23407738 -194629420 - L2 LINE L2 0 3313 2920 261 279 90 33 chr3 23407988 23408110 -194629048 + L3 LINE CR1 1445 1573 -4 1815 152 10 23 chr3 23408123 23408426 -194628732 - AluJb SINE Alu -13 299 1 1731 175 24 0 chr3 23408751 23409043 -194628115 - AluJb SINE Alu -13 299 1 1699 209 108 12 chr3 23409365 23409791 -194627367 + MLT1C LTR MaLR 1 467 0 2358 85 0 3 chr3 23410248 23410541 -194626617 - AluSp SINE Alu -21 292 1 1848 179 3 0 chr3 23410937 23411239 -194625919 - AluJb SINE Alu -9 303 1 502 239 56 46 chr3 23411279 23411476 -194625682 + Charlie8 DNA MER1_type 83 281 -2136 232 297 33 0 chr3 23411521 23411612 -194625546 + MIR SINE MIR 56 149 -113 489 264 95 68 chr3 23411810 23412053 -194625105 - L2 LINE L2 -1 3312 3058 2410 84 0 0 chr3 23412053 23412351 -194624807 + AluY SINE Alu 1 298 -13 489 264 95 68 chr3 23412351 23412402 -194624756 - L2 LINE L2 -255 3058 3010 2191 109 10 0 chr3 23412410 23412703 -194624455 + AluSq SINE Alu 6 301 -12 251 255 29 10 chr3 23412958 23413060 -194624098 + (CATATA)n Simple_repeat Simple_repeat 3 106 0 1857 157 10 7 chr3 23413263 23413556 -194623602 - AluJb SINE Alu -18 294 1 442 161 17 145 chr3 23413557 23413788 -194623370 + L1MEc LINE L1 2390 2474 -3952 1022 174 24 0 chr3 23413793 23413960 -194623198 + FAM SINE Alu 1 43 -6 1454 158 3 101 chr3 23413963 23414291 -194622867 + AluY SINE Alu 1 296 -15 269 228 96 52 chr3 23414292 23414428 -194622730 + L1MEc LINE L1 2555 2696 -3730 901 143 0 0 chr3 23414428 23414561 -194622597 + FLAM_C SINE Alu 1 133 0 183 114 0 0 chr3 23414561 23414596 -194622562 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 277 32 0 0 chr3 23414609 23414640 -194622518 + U2 snRNA snRNA 1 31 -157 395 191 46 46 chr3 23414640 23414771 -194622387 + L1MEc LINE L1 2690 2820 -3606 365 302 130 0 chr3 23414779 23414971 -194622187 - L3 LINE CR1 -802 775 559 707 272 95 9 chr3 23414992 23415224 -194621934 - MIR SINE MIR -4 258 7 1791 122 7 22 chr3 23416231 23416502 -194620656 + AluSx SINE Alu 1 267 -45 2430 93 3 0 chr3 23416523 23416835 -194620323 + AluSq SINE Alu 1 313 0 6170 189 47 40 chr3 23416850 23417563 -194619595 + L1MB7 LINE L1 3584 4291 -1855 1420 189 57 7 chr3 23417563 23417843 -194619315 + AluJo SINE Alu 1 294 -18 2380 92 3 9 chr3 23417846 23418161 -194618997 + AluSq SINE Alu 1 313 0 6170 189 47 40 chr3 23418161 23418367 -194618791 + L1MB7 LINE L1 4292 4495 -1651 2462 77 7 0 chr3 23418367 23418666 -194618492 + AluY SINE Alu 1 301 -10 6170 189 47 40 chr3 23418666 23418928 -194618230 + L1MB7 LINE L1 4495 4754 -1392 3617 140 29 27 chr3 23418928 23419593 -194617565 + L1MA7 LINE L1 5621 6286 -5 6170 189 47 40 chr3 23419593 23419975 -194617183 + L1MB7 LINE L1 4754 5163 -983 810 214 0 42 chr3 23419975 23420143 -194617015 - AluJb SINE Alu -21 291 131 2396 87 3 0 chr3 23420146 23420446 -194616712 - AluSp SINE Alu -12 301 1 1533 164 38 24 chr3 23420456 23420748 -194616410 - AluJb SINE Alu -13 299 4 4737 152 63 6 chr3 23420753 23421696 -194615462 + L1MB7 LINE L1 5153 6165 -19 1870 150 49 15 chr3 23422097 23422424 -194614734 - MER7A DNA MER2_type 0 346 11 2298 76 28 0 chr3 23422619 23422910 -194614248 + AluY SINE Alu 1 299 -12 3928 165 76 17 chr3 23423172 23423788 -194613370 + L1MB7 LINE L1 5010 5714 -470 216 0 0 0 chr3 23423788 23423812 -194613346 + (CA)n Simple_repeat Simple_repeat 2 25 0 3928 165 76 17 chr3 23423812 23424228 -194612930 + L1MB7 LINE L1 5714 6104 -80 1055 91 0 0 chr3 23424647 23424779 -194612379 - AluSp SINE Alu -181 132 1 3854 205 91 46 chr3 23424785 23425321 -194611837 - L1MCb LINE L1 -4820 1744 1233 1809 140 28 14 chr3 23425321 23425474 -194611684 - AluSx SINE Alu -18 294 134 2366 103 0 0 chr3 23425474 23425774 -194611384 - AluSg SINE Alu -10 300 1 1809 140 28 14 chr3 23425774 23425905 -194611253 - AluSx SINE Alu -178 134 6 3854 205 91 46 chr3 23425905 23426499 -194610659 - L1MCb LINE L1 -5331 1233 667 2003 147 13 16 chr3 23426499 23426812 -194610346 - AluJb SINE Alu 0 312 1 3854 205 91 46 chr3 23426812 23427319 -194609839 - L1MCb LINE L1 -5897 667 2 180 262 204 19 chr3 23427490 23427593 -194609565 + MIR SINE MIR 23 144 -118 244 297 0 77 chr3 23427881 23427972 -194609186 + MIR SINE MIR 37 120 -142 195 226 38 0 chr3 23428078 23428131 -194609027 + MIR SINE MIR 97 151 -111 2398 83 0 3 chr3 23429156 23429457 -194607701 - AluSq SINE Alu -13 300 1 2066 142 3 0 chr3 23430447 23430743 -194606415 + AluSx SINE Alu 1 297 -15 2376 76 0 3 chr3 23431058 23431349 -194605809 - AluY SINE Alu -21 290 1 853 240 42 28 chr3 23434277 23434560 -194602598 + L2 LINE L2 3019 3305 -8 861 144 0 43 chr3 23434655 23434794 -194602364 + FLAM_C SINE Alu 1 133 0 808 224 26 0 chr3 23435732 23435888 -194601270 + MER45A DNA AcHobo 1 160 -18 210 279 101 23 chr3 23436060 23436189 -194600969 + MIR SINE MIR 109 247 -15 1692 102 4 4 chr3 23436887 23437113 -194600045 + AluSg/x SINE Alu 71 296 -14 498 33 0 0 chr3 23437113 23437173 -194599985 + (TA)n Simple_repeat Simple_repeat 2 61 0 1028 190 8 101 chr3 23437436 23437610 -194599548 - MER58A DNA MER1_type -2196 224 35 3241 161 43 37 chr3 23437610 23438287 -194598871 + L1MB7 LINE L1 5485 6165 -19 1028 190 8 101 chr3 23438287 23438308 -194598850 - MER58A DNA MER1_type -2385 35 53 2482 77 0 7 chr3 23438308 23438608 -194598550 + AluSc SINE Alu 1 298 -11 1028 190 8 101 chr3 23438608 23438658 -194598500 - MER58A DNA MER1_type -2366 54 1 1933 121 0 4 chr3 23439363 23439627 -194597531 - AluSx SINE Alu -16 296 34 188 320 78 19 chr3 23441439 23441542 -194595616 + L2 LINE L2 3155 3263 -9 201 322 35 9 chr3 23441910 23442025 -194595133 + L2 LINE L2 2917 3034 -238 266 348 6 85 chr3 23442283 23442364 -194594794 + L2 LINE L2 3121 3184 -88 691 211 99 89 chr3 23442364 23442456 -194594702 + MER58C DNA MER1_type 1 91 -2329 2207 121 3 3 chr3 23442456 23442763 -194594395 - AluSx SINE Alu -5 307 1 691 211 99 89 chr3 23442763 23442883 -194594275 + MER58C DNA MER1_type 91 215 0 266 348 6 85 chr3 23442883 23442965 -194594193 + L2 LINE L2 3184 3271 -1 1111 170 13 52 chr3 23444393 23444622 -194592536 + AluJo SINE Alu 78 297 -15 766 221 50 15 chr3 23444761 23444960 -194592198 + MIR SINE MIR 8 213 -49 1404 128 46 39 chr3 23445380 23445580 -194591578 - L1MA8 LINE L1 -2 6289 6085 1893 148 24 0 chr3 23445580 23445877 -194591281 + AluSx SINE Alu 1 304 -8 1404 128 46 39 chr3 23445877 23445958 -194591200 - L1MA8 LINE L1 -206 6085 6006 2276 100 0 10 chr3 23446085 23446386 -194590772 - AluSp SINE Alu -15 298 1 565 229 0 0 chr3 23446387 23446496 -194590662 + AluJo/FRAM SINE Alu 203 311 -1 807 178 85 96 chr3 23446513 23446702 -194590456 - LTR56 LTR ERV1 -160 285 95 2104 135 3 6 chr3 23446702 23447013 -194590145 - AluJb SINE Alu -2 310 1 306 0 0 0 chr3 23447022 23447056 -194590102 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 2391 89 0 0 chr3 23447056 23447348 -194589810 - AluSx SINE Alu -20 292 1 807 178 85 96 chr3 23447348 23447428 -194589730 - LTR56 LTR ERV1 -356 89 8 2111 189 29 2 chr3 23447428 23447841 -194589317 + L1MB4 LINE L1 5753 6176 -4 1615 144 12 0 chr3 23447853 23448110 -194589048 - MER84 LTR ERVI -2 505 246 989 80 0 0 chr3 23448110 23448235 -194588923 + AluSp/q SINE Alu 177 301 -12 1699 108 8 0 chr3 23448236 23448477 -194588681 - MER84 LTR ERVI -264 243 1 409 219 169 15 chr3 23448482 23448683 -194588475 - L2 LINE L2 -423 2891 2660 508 153 138 102 chr3 23449527 23449619 -194587539 + L2 LINE L2 2371 2458 -856 1997 133 0 13 chr3 23449619 23449920 -194587238 - AluJb SINE Alu -15 297 1 508 153 138 102 chr3 23449920 23450023 -194587135 + L2 LINE L2 2458 2573 -741 3938 162 25 32 chr3 23450023 23450745 -194586413 + LTR62 LTR ERVK 1 717 -2 908 124 0 0 chr3 23451820 23451967 -194585191 + AluSg/x SINE Alu 164 310 0 1733 188 3 7 chr3 23452588 23452886 -194584272 + AluSx SINE Alu 1 297 -15 2360 86 0 0 chr3 23453817 23454107 -194583051 - AluSq SINE Alu -19 294 5 255 214 18 0 chr3 23454734 23454790 -194582368 + L2 LINE L2 3248 3304 -9 339 258 22 0 chr3 23454805 23454894 -194582264 + MIR SINE MIR 82 172 -90 580 222 89 104 chr3 23454935 23455273 -194581885 - MLT1J1 LTR MaLR -110 336 4 3058 141 9 50 chr3 23455291 23455837 -194581321 + LTR26B LTR ERV1 1 524 -7 344 167 0 13 chr3 23456029 23456107 -194581051 + CT-rich Low_complexity Low_complexity 1 77 0 2408 93 3 3 chr3 23456503 23456815 -194580343 - AluSp SINE Alu -1 312 1 1451 214 121 67 chr3 23457110 23457558 -194579600 - MLT1H LTR MaLR -6 543 72 2121 132 82 6 chr3 23457567 23457923 -194579235 - MLT1B LTR MaLR -7 383 1 699 193 132 24 chr3 23458710 23458923 -194578235 + MIR SINE MIR 25 260 -2 1708 146 39 29 chr3 23458936 23459245 -194577913 - AluJo SINE Alu 0 312 1 2610 47 0 0 chr3 23459830 23460131 -194577027 + AluY SINE Alu 1 301 -10 1486 197 3 27 chr3 23460517 23460812 -194576346 - AluJo SINE Alu -24 288 1 31 0 0 0 chr3 23460850 23460881 -194576277 + AT_rich Low_complexity Low_complexity 1 31 0 263 301 80 53 chr3 23461320 23461582 -194575576 + L3 LINE CR1 1308 1576 -1 418 248 10 10 chr3 23462382 23462483 -194574675 - LTR16B LTR ERVL 0 464 364 826 176 28 28 chr3 23462491 23462673 -194574485 + MER53 DNA DNA 2 183 -6 535 268 68 29 chr3 23462671 23462753 -194574405 - LTR16B LTR ERVL -102 362 285 * 2134 181 82 19 chr3 23462753 23463227 -194573931 + MLT1D LTR MaLR 2 505 0 535 268 68 29 chr3 23463227 23463463 -194573695 - LTR16B LTR ERVL -179 285 1 313 215 25 0 chr3 23463474 23463553 -194573605 - MIR SINE MIR -111 151 71 550 215 35 105 chr3 23463553 23463753 -194573405 - MER20 DNA MER1_type -33 186 1 380 304 54 22 chr3 23463782 23463966 -194573192 + MIR SINE MIR 41 230 -32 2234 122 0 0 chr3 23463969 23464273 -194572885 - AluSx SINE Alu -8 304 1 196 368 8 0 chr3 23465452 23465585 -194571573 - L2 LINE L2 -1026 2288 2155 1375 132 54 0 chr3 23465613 23465818 -194571340 - AluSx SINE Alu -96 216 1 25 31 0 0 chr3 23465818 23465850 -194571308 + AT_rich Low_complexity Low_complexity 1 32 0 1484 93 10 5 chr3 23466050 23466244 -194570914 + AluSx SINE Alu 3 197 -115 271 198 49 31 chr3 23466329 23466452 -194570706 + L2 LINE L2 2921 3047 -266 262 248 168 32 chr3 23466682 23466807 -194570351 - MIR SINE MIR -115 147 6 641 163 7 0 chr3 23467842 23467977 -194569181 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 272 300 12 0 chr3 23467977 23468057 -194569101 + (CCCA)n Simple_repeat Simple_repeat 4 84 0 450 278 0 0 chr3 23468057 23468237 -194568921 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 452 277 92 11 chr3 23468335 23468519 -194568639 + MIR SINE MIR 12 210 -52 2217 129 3 0 chr3 23469177 23469488 -194567670 + AluSx SINE Alu 1 312 0 264 206 175 0 chr3 23469830 23469927 -194567231 + MIR SINE MIR 31 144 -118 1910 140 21 11 chr3 23470401 23470687 -194566471 - AluJb SINE Alu -23 289 1 435 239 99 67 chr3 23470689 23471003 -194566155 - L1MC5 LINE L1 -28 7933 7610 2226 106 0 20 chr3 23471140 23471442 -194565716 + AluSc SINE Alu 1 296 -13 1901 124 4 4 chr3 23472030 23472295 -194564863 + AluSx SINE Alu 1 265 -47 355 153 92 20 chr3 23472367 23472465 -194564693 - HAL1b LINE L1 -28 1320 1216 512 200 72 33 chr3 23472517 23472697 -194564461 - HAL1b LINE L1 -222 1126 940 946 276 113 11 chr3 23473199 23473649 -194563509 - HAL1b LINE L1 -415 933 438 2353 85 0 16 chr3 23473652 23473968 -194563190 - AluY SINE Alu 0 311 1 228 312 83 0 chr3 23474029 23474138 -194563020 - HAL1b LINE L1 -734 614 497 225 268 49 0 chr3 23474241 23474323 -194562835 - L2 LINE L2 -220 3052 2967 1296 189 41 144 chr3 23474338 23474797 -194562361 + MLT2B1 LTR ERVL 3 414 0 192 77 0 0 chr3 23475180 23475206 -194561952 + (TGG)n Simple_repeat Simple_repeat 2 27 0 587 89 0 0 chr3 23475374 23475453 -194561705 + MADE1 DNA Mariner 2 80 0 619 337 30 26 chr3 23476808 23477111 -194560047 + MLT1I LTR MaLR 103 406 -3 378 0 0 0 chr3 23477125 23477167 -194559991 + (TG)n Simple_repeat Simple_repeat 1 42 0 781 221 19 33 chr3 23478324 23478537 -194558621 - MER20 DNA MER1_type -9 210 1 282 196 69 143 chr3 23478595 23478695 -194558463 + L1ME3A LINE L1 5996 6077 -93 1797 153 6 31 chr3 23478695 23479015 -194558143 - AluJo SINE Alu 0 312 1 282 196 69 143 chr3 23479015 23479103 -194558055 + L1ME3A LINE L1 6077 6170 0 1966 148 10 3 chr3 23479456 23479746 -194557412 - AluSx SINE Alu -18 294 3 2165 113 10 0 chr3 23479955 23480247 -194556911 + AluSx SINE Alu 1 295 -17 1669 196 3 13 chr3 23480902 23481064 -194556094 - L1M3 LINE L1 -528 5652 5495 2262 117 0 7 chr3 23481064 23481372 -194555786 - AluSx SINE Alu -6 306 1 1669 196 3 13 chr3 23481372 23481536 -194555622 - L1M3 LINE L1 -685 5495 5331 952 264 135 38 chr3 23481536 23481957 -194555201 + L1ME1 LINE L1 5652 6113 -53 1094 197 14 27 chr3 23482029 23482252 -194554906 + AluJo SINE Alu 1 220 -92 386 111 0 0 chr3 23482252 23482306 -194554852 + AluSg/x SINE Alu 84 137 -163 1170 149 11 0 chr3 23483184 23483358 -194553800 + AluSg/x SINE Alu 130 305 -7 885 169 0 20 chr3 23483362 23483510 -194553648 + FRAM SINE Alu 2 146 -30 444 118 0 0 chr3 23483512 23483580 -194553578 + (CATA)n Simple_repeat Simple_repeat 2 69 0 190 268 173 31 chr3 23483752 23483879 -194553279 - MIR SINE MIR -25 237 93 2604 152 18 25 chr3 23483880 23484327 -194552831 - L1MA7 LINE L1 -233 6058 5615 1049 153 88 0 chr3 23484327 23484538 -194552620 + L1MA7 LINE L1 6051 6285 -6 183 233 35 81 chr3 23484556 23484642 -194552516 - MIR SINE MIR -156 106 25 183 80 0 0 chr3 23485410 23485435 -194551723 + (T)n Simple_repeat Simple_repeat 1 25 0 189 238 29 143 chr3 23485499 23485604 -194551554 - L2 LINE L2 -7 3265 3173 2842 201 27 55 chr3 23486477 23487318 -194549840 - LTR5 LTR ERVK 0 969 152 283 409 0 24 chr3 23487868 23487995 -194549163 + L2 LINE L2 3143 3266 -6 185 420 0 0 chr3 23488224 23488305 -194548853 + MIR SINE MIR 19 99 -109 496 311 30 0 chr3 23488551 23488715 -194548443 + MIR SINE MIR 88 256 -6 847 96 0 59 chr3 23488953 23489089 -194548069 + L1M3 LINE L1 5454 5581 -590 192 123 82 0 chr3 23489267 23489340 -194547818 + (TA)n Simple_repeat Simple_repeat 1 79 0 854 247 119 24 chr3 23489570 23490085 -194547073 + MLT1G1 LTR MaLR 1 515 -15 1351 131 58 0 chr3 23490375 23490635 -194546523 + MER33 DNA MER1_type 37 311 -13 1830 213 52 56 chr3 23491204 23491674 -194545484 + Charlie1b DNA MER1_type 1 470 -2291 1744 156 19 6 chr3 23491674 23491994 -194545164 + L1MA9 LINE L1 5984 6307 -5 1830 213 52 56 chr3 23491994 23492044 -194545114 + Charlie1b DNA MER1_type 470 519 -4 281 311 102 22 chr3 23494163 23494364 -194542794 + MIR SINE MIR 30 244 -18 24 0 0 0 chr3 23494592 23494616 -194542542 + AT_rich Low_complexity Low_complexity 1 24 0 268 267 27 0 chr3 23495147 23495222 -194541936 + MLT1I LTR MaLR 1 77 -332 827 248 181 26 chr3 23495287 23495557 -194541601 + MLT1I LTR MaLR 88 399 -10 369 290 34 34 chr3 23495724 23495931 -194541227 - L1ME LINE L1 -389 5732 5526 445 344 44 6 chr3 23496136 23496319 -194540839 + MER91A DNA MER1_type 2 191 -5 254 328 0 0 chr3 23496890 23496954 -194540204 + polypurine Low_complexity Low_complexity 4 67 0 267 198 55 0 chr3 23496973 23497064 -194540094 + GA-rich Low_complexity Low_complexity 1 96 0 197 280 187 28 chr3 23497841 23497948 -194539210 + L2 LINE L2 3148 3271 -1 417 221 100 57 chr3 23498472 23498612 -194538546 + MLT1I LTR MaLR 404 549 0 188 375 107 0 chr3 23498619 23498731 -194538427 + L2 LINE L2 2915 3038 -234 310 197 56 0 chr3 23499297 23499368 -194537790 + MER94 DNA DNA 48 122 -12 237 297 0 55 chr3 23499898 23499989 -194537169 + MIR3 SINE MIR 122 207 -1 1382 186 52 42 chr3 23500443 23500749 -194536409 + AluJo SINE Alu 1 309 -3 320 289 69 64 chr3 23500806 23501024 -194536134 + MIR SINE MIR 10 228 -34 302 237 10 0 chr3 23501600 23501697 -194535461 + (CTATA)n Simple_repeat Simple_repeat 1 98 0 612 91 0 0 chr3 23501699 23501787 -194535371 + (CCTAT)n Simple_repeat Simple_repeat 2 89 0 411 223 273 0 chr3 23501790 23501929 -194535229 + MER5A DNA MER1_type 9 185 -4 6968 58 9 43 chr3 23502976 23503963 -194533195 - SVA Other Other 0 1386 433 5825 77 31 15 chr3 23503976 23504927 -194532231 - SVA Other Other -520 866 1 705 241 52 94 chr3 23505169 23505212 -194531946 - HAL1 LINE L1 -100 2407 2364 2521 61 3 0 chr3 23505212 23505509 -194531649 - AluY SINE Alu -12 299 2 705 241 52 94 chr3 23505509 23505571 -194531587 - HAL1 LINE L1 -143 2364 2301 2002 149 10 19 chr3 23505571 23505880 -194531278 - AluJo SINE Alu -6 306 1 705 241 52 94 chr3 23505880 23506155 -194531003 - HAL1 LINE L1 -206 2301 2042 232 274 68 8 chr3 23506245 23506362 -194530796 - L1ME2 LINE L1 -2 6162 6039 243 189 40 14 chr3 23506581 23506655 -194530503 + (CAA)n Simple_repeat Simple_repeat 3 78 0 1981 194 109 2 chr3 23507733 23508146 -194529012 + MSTB2 LTR MaLR 1 457 0 196 327 58 0 chr3 23510869 23510973 -194526185 - MER5A DNA MER1_type -79 110 1 408 208 167 17 chr3 23511000 23511120 -194526038 - MER5B DNA MER1_type -40 138 1 589 153 0 0 chr3 23511150 23511256 -194525902 + MER5A DNA MER1_type 4 109 -80 233 240 231 10 chr3 23511181 23511285 -194525873 - MER5A DNA MER1_type -23 166 40 * 280 328 0 17 chr3 23511330 23511446 -194525712 + MER5B DNA MER1_type 63 176 -2 282 324 28 49 chr3 23511452 23511594 -194525564 + MIR SINE MIR 13 151 -111 5050 118 7 17 chr3 23511727 23512934 -194524224 + L1P4 LINE L1 4589 5792 -371 817 152 7 46 chr3 23512934 23513085 -194524073 - THE1C LTR MaLR 0 375 231 199 248 0 0 chr3 23513711 23513765 -194523393 - MIR SINE MIR -65 143 97 681 153 140 20 chr3 23514365 23514515 -194522643 - MLT1D LTR MaLR 0 505 338 679 137 26 0 chr3 23514615 23514732 -194522426 + L1 LINE L1 4689 4808 -1338 220 210 25 0 chr3 23514739 23514820 -194522338 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 858 198 54 0 chr3 23515968 23516135 -194521023 - MER97a DNA MER1_type? -716 178 3 333 0 0 0 chr3 23516265 23516302 -194520856 + (CA)n Simple_repeat Simple_repeat 2 38 0 372 158 0 0 chr3 23516302 23516378 -194520780 + GA-rich Low_complexity Low_complexity 1 76 0 197 234 187 28 chr3 23517738 23517845 -194519313 + L2 LINE L2 3189 3312 -1 417 221 100 57 chr3 23518369 23518509 -194518649 + MLT1H LTR MaLR 404 549 0 188 375 107 0 chr3 23518516 23518628 -194518530 + L2 LINE L2 2915 3038 -234 310 197 56 0 chr3 23519194 23519265 -194517893 + MER94 DNA DNA 48 122 -12 237 297 0 55 chr3 23519795 23519886 -194517272 + MIR3 SINE MIR 122 207 -1 1382 186 52 42 chr3 23520340 23520646 -194516512 + AluJo SINE Alu 1 309 -3 320 289 69 64 chr3 23520703 23520921 -194516237 + MIR SINE MIR 10 228 -34 302 237 10 0 chr3 23521497 23521594 -194515564 + (CTATA)n Simple_repeat Simple_repeat 1 98 0 612 91 0 0 chr3 23521596 23521684 -194515474 + (CCTAT)n Simple_repeat Simple_repeat 2 89 0 411 223 273 0 chr3 23521687 23521826 -194515332 + MER5A DNA MER1_type 9 185 -4 6955 57 10 43 chr3 23522873 23523859 -194513299 - SVA Other Other 0 1386 433 6117 60 19 47 chr3 23523872 23525032 -194512126 - SVA Other Other -518 868 4 223 0 0 96 chr3 23525032 23525084 -194512074 + (GGGAGA)n Simple_repeat Simple_repeat 4 50 0 820 157 0 0 chr3 23525618 23525733 -194511425 + FLAM_C SINE Alu 1 115 -28 956 292 128 8 chr3 23526488 23526855 -194510303 + LTR16C LTR ERVL 81 491 0 26 0 0 0 chr3 23527013 23527039 -194510119 + AT_rich Low_complexity Low_complexity 1 26 0 2692 80 0 3 chr3 23527078 23527427 -194509731 + L1PA8A LINE L1 5480 5827 -304 2609 76 0 12 chr3 23527527 23527871 -194509287 + L1PA8A LINE L1 5780 6119 -12 300 245 108 10 chr3 23527970 23528072 -194509086 + MIR SINE MIR 95 206 -56 329 152 174 43 chr3 23528332 23528424 -194508734 - MER53 DNA DNA -82 107 4 260 288 0 0 chr3 23528840 23528906 -194508252 + MIR SINE MIR 196 261 -1 253 320 0 13 chr3 23529493 23529571 -194507587 - MIR SINE MIR -178 84 8 1607 188 4 11 chr3 23530406 23530683 -194506475 + AluJo SINE Alu 1 275 -37 33 90 0 0 chr3 23531658 23531747 -194505411 + AT_rich Low_complexity Low_complexity 1 89 0 572 270 104 12 chr3 23533541 23533704 -194503454 + MER20B DNA MER1_type 1 178 -605 330 276 64 72 chr3 23533865 23534251 -194502907 + MLT1H LTR MaLR 57 533 -16 441 317 43 11 chr3 23535365 23535551 -194501607 - MIR SINE MIR -51 211 20 209 317 28 42 chr3 23536817 23536959 -194500199 + MIR SINE MIR 58 197 -65 468 285 15 69 chr3 23537080 23537340 -194499818 + LTR16A1 LTR ERVL 208 453 -4 207 219 140 84 chr3 23537371 23537555 -194499603 + MIR SINE MIR 42 235 -27 443 309 79 0 chr3 23537939 23538104 -194499054 - MIR SINE MIR 0 262 85 23 0 0 0 chr3 23538440 23538463 -194498695 + AT_rich Low_complexity Low_complexity 1 23 0 964 259 110 47 chr3 23539457 23539886 -194497272 + LTR16A1 LTR ERVL 2 457 0 258 184 92 103 chr3 23540240 23540327 -194496831 + L2 LINE L2 3141 3226 -46 685 224 28 0 chr3 23540470 23540613 -194496545 + MER3 DNA MER1_type 62 208 -1 268 260 0 0 chr3 23540574 23540624 -194496534 - MER3 DNA MER1_type -122 87 38 * 334 353 98 0 chr3 23540627 23540749 -194496409 - MIR3 SINE MIR -52 156 23 845 251 49 12 chr3 23542697 23542944 -194494214 + MIR SINE MIR 2 257 -5 230 103 103 0 chr3 23543002 23543041 -194494117 - L1P4 LINE L1 -426 5735 5693 21 36 0 0 chr3 23543289 23543317 -194493841 + AT_rich Low_complexity Low_complexity 1 28 0 240 258 30 0 chr3 23543619 23543685 -194493473 - L1MC4a LINE L1 -587 7221 7154 2178 216 52 5 chr3 23544444 23545023 -194492135 + L1MC4 LINE L1 7161 7766 -276 1341 108 36 21 chr3 23545023 23545217 -194491941 + AluJb SINE Alu 98 294 -18 607 230 29 11 chr3 23545221 23545395 -194491763 + L1MC4 LINE L1 7757 7933 -109 296 341 71 45 chr3 23545415 23545723 -194491435 - L2 LINE L2 -20 3252 2937 629 226 158 12 chr3 23546084 23546248 -194490910 - MER5A DNA MER1_type 0 189 2 1579 182 4 11 chr3 23546253 23546528 -194490630 + AluJo SINE Alu 1 273 -39 443 128 0 13 chr3 23546557 23546635 -194490523 + (GAAAA)n Simple_repeat Simple_repeat 3 79 0 22 0 0 0 chr3 23547102 23547124 -194490034 + AT_rich Low_complexity Low_complexity 1 22 0 604 224 6 6 chr3 23547473 23547652 -194489506 + L1 LINE L1 3246 3424 -2722 40637 32 27 3 chr3 23547653 23553690 -194483468 + L1PA3 LINE L1 1 6155 0 15928 93 10 8 chr3 23553822 23556766 -194480392 + L1PA7 LINE L1 3221 6154 0 380 164 0 0 chr3 23556803 23556864 -194480294 + L1PA16 LINE L1 6098 6158 -8 928 261 9 4 chr3 23557440 23557670 -194479488 - MLT1G1 LTR MaLR -364 231 1 414 270 98 58 chr3 23557670 23557844 -194479314 - MLT1G1-int LTR MaLR 0 1371 1191 250 211 53 0 chr3 23558093 23558150 -194479008 + MER46C DNA MER2_type 279 338 0 631 257 34 22 chr3 23558411 23558590 -194478568 - MIR SINE MIR -14 248 68 1846 193 38 34 chr3 23558594 23558672 -194478486 - Looper DNA T2_type -941 617 541 20802 94 21 1 chr3 23558672 23561324 -194475834 - Charlie3 DNA MER1_type -4 2706 1 1846 193 38 34 chr3 23561324 23561340 -194475818 - Looper DNA T2_type -1017 541 527 912 200 11 21 chr3 23561340 23561530 -194475628 + L1MD2 LINE L1 6172 6359 0 1846 193 38 34 chr3 23561530 23561912 -194475246 - Looper DNA T2_type -1031 527 138 205 188 24 0 chr3 23561912 23561997 -194475161 + (TA)n Simple_repeat Simple_repeat 1 87 0 735 164 26 13 chr3 23561997 23562149 -194475009 - Looper DNA T2_type -1402 156 3 348 235 155 46 chr3 23562160 23562368 -194474790 + L2 LINE L2 2772 2997 -275 192 310 99 14 chr3 23562463 23562534 -194474624 + L2 LINE L2 3134 3210 -62 2121 99 14 7 chr3 23562689 23562983 -194474175 + AluSq SINE Alu 1 296 -17 348 217 165 26 chr3 23563009 23563124 -194474034 + Charlie8 DNA MER1_type 91 221 -2196 2112 98 0 4 chr3 23563259 23563535 -194473623 - AluSq SINE Alu -15 298 24 1729 99 0 5 chr3 23563535 23563756 -194473402 - AluSq SINE Alu -92 221 1 672 232 68 11 chr3 23564220 23564397 -194472761 + MER5A DNA MER1_type 1 187 -2 245 348 33 52 chr3 23564496 23564706 -194472452 + L2 LINE L2 2958 3163 -109 30 45 0 0 chr3 23564852 23564896 -194472262 + AT_rich Low_complexity Low_complexity 1 44 0 1215 194 26 8 chr3 23565343 23565611 -194471547 + L1M4 LINE L1 4290 4562 -1584 205 305 85 24 chr3 23565654 23565736 -194471422 + L2 LINE L2 3185 3271 -1 295 282 29 58 chr3 23566012 23566115 -194471043 - L2 LINE L2 -1 3271 3172 704 220 196 4 chr3 23566302 23566547 -194470611 - L1ME2 LINE L1 -6 6158 5867 24 67 0 0 chr3 23567089 23567134 -194470024 + GC_rich Low_complexity Low_complexity 1 45 0 6595 146 83 8 chr3 23568018 23569162 -194467996 - Tigger3b DNA MER2_type 0 1231 2 446 290 9 63 chr3 23569238 23569277 -194467881 - L1ME2 LINE L1 -306 5815 5775 1640 157 7 49 chr3 23569277 23569583 -194467575 - AluJo SINE Alu -19 293 1 446 290 9 63 chr3 23569583 23569764 -194467394 - L1ME2 LINE L1 -346 5775 5607 2360 94 3 0 chr3 23569998 23570297 -194466861 - AluSp SINE Alu -13 300 1 680 154 48 148 chr3 23570303 23570597 -194466561 - L1MA4 LINE L1 0 6300 6041 1541 167 12 4 chr3 23570990 23571248 -194465910 - AluJo SINE Alu -14 298 39 1014 73 6 8 chr3 23571584 23571761 -194465397 - AluJb SINE Alu -13 299 86 540 79 0 40 chr3 23572453 23572529 -194464629 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2045 144 17 0 chr3 23572600 23572899 -194464259 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 23572953 23572982 -194464176 + AT_rich Low_complexity Low_complexity 1 29 0 304 297 162 9 chr3 23573386 23573497 -194463661 - MIR3 SINE MIR -32 176 49 2421 77 0 3 chr3 23574867 23575167 -194461991 - AluY SINE Alu -12 299 1 1762 171 24 0 chr3 23575429 23575722 -194461436 + AluJb SINE Alu 1 300 -12 183 266 101 101 chr3 23575731 23575817 -194461341 + MIR SINE MIR 14 102 -160 1048 157 103 29 chr3 23575817 23576021 -194461137 + MER20 DNA MER1_type 1 219 0 183 266 101 101 chr3 23576021 23576092 -194461066 + MIR SINE MIR 101 171 -91 759 180 0 58 chr3 23576132 23576271 -194460887 + FLAM_A SINE Alu 2 132 -1 4860 162 32 18 chr3 23576306 23576798 -194460360 - L1MB7 LINE L1 0 6184 5671 2121 125 0 7 chr3 23576798 23577087 -194460071 + AluSx SINE Alu 8 294 -18 4860 162 32 18 chr3 23577087 23577534 -194459624 - L1MB7 LINE L1 -513 5671 5232 1919 143 0 33 chr3 23577943 23578250 -194458908 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr3 23578670 23578692 -194458466 + AT_rich Low_complexity Low_complexity 1 22 0 885 221 77 71 chr3 23579896 23580235 -194456923 + L2 LINE L2 2973 3313 0 220 384 12 43 chr3 23580405 23580569 -194456589 + L2 LINE L2 563 721 -2593 244 241 0 17 chr3 23580602 23580660 -194456498 - Charlie4 DNA MER1_type -23 1938 1882 416 332 72 69 chr3 23580767 23580906 -194456252 + L2 LINE L2 2765 2902 -370 2335 96 6 10 chr3 23580906 23581218 -194455940 + AluSq SINE Alu 1 311 -2 416 332 72 69 chr3 23581218 23581569 -194455589 + L2 LINE L2 2902 3256 -16 2026 118 0 44 chr3 23582147 23582480 -194454678 - AluSx SINE Alu 0 320 1 2080 130 0 7 chr3 23582685 23582986 -194454172 + AluJb SINE Alu 11 309 -3 341 301 59 50 chr3 23583313 23583532 -194453626 - MIR SINE MIR -30 232 12 1165 119 64 50 chr3 23583757 23583975 -194453183 - AluJo SINE Alu -5 307 87 2190 119 0 19 chr3 23584141 23584460 -194452698 - AluSq SINE Alu 0 313 1 1531 146 113 22 chr3 23585164 23585438 -194451720 - AluJo SINE Alu -13 299 1 1758 160 29 39 chr3 23585446 23585753 -194451405 - AluJb SINE Alu -8 304 1 468 218 39 59 chr3 23586133 23586319 -194450839 + MIR SINE MIR 17 203 -59 201 39 0 0 chr3 23586762 23586788 -194450370 + (TG)n Simple_repeat Simple_repeat 2 27 0 1727 124 3 39 chr3 23586789 23587072 -194450086 - AluJb SINE Alu -39 273 1 381 246 188 22 chr3 23587462 23587600 -194449558 + MIR SINE MIR 81 241 -21 1435 179 47 11 chr3 23588626 23588905 -194448253 - AluJo SINE Alu -19 293 5 2260 92 0 0 chr3 23588981 23589300 -194447858 + AluSq SINE Alu 1 319 0 384 236 24 49 chr3 23589948 23590071 -194447087 + L2 LINE L2 3193 3312 -1 243 61 0 0 chr3 23590198 23590231 -194446927 + (A)n Simple_repeat Simple_repeat 1 33 0 215 153 119 51 chr3 23591638 23591697 -194445461 + MIR SINE MIR 135 197 -65 441 273 55 8 chr3 23591884 23592012 -194445146 + MIR SINE MIR 20 153 -55 2230 123 0 3 chr3 23592369 23592679 -194444479 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr3 23592849 23592870 -194444288 + AT_rich Low_complexity Low_complexity 1 21 0 554 138 92 31 chr3 23592930 23592996 -194444162 - L1MB8 LINE L1 -6 6172 6111 2407 58 41 0 chr3 23592996 23593290 -194443868 - AluY SINE Alu -5 306 1 554 138 92 31 chr3 23593290 23593353 -194443805 - L1MB8 LINE L1 -67 6111 6035 225 346 13 10 chr3 23593470 23593627 -194443531 + MIR SINE MIR 26 243 -19 368 261 36 51 chr3 23593641 23593779 -194443379 + L2 LINE L2 3178 3313 0 319 186 5 59 chr3 23594239 23594334 -194442824 + L1ME2 LINE L1 6015 6108 -54 1830 138 50 10 chr3 23594334 23594631 -194442527 + AluJb SINE Alu 1 309 -3 341 301 59 50 chr3 23594957 23595176 -194441982 - MIR SINE MIR -30 232 12 1165 119 64 50 chr3 23595401 23595619 -194441539 - AluJo SINE Alu -5 307 87 2190 119 0 19 chr3 23595785 23596104 -194441054 - AluSq SINE Alu 0 313 1 1531 146 113 22 chr3 23596808 23597082 -194440076 - AluJo SINE Alu -13 299 1 1758 160 29 39 chr3 23597090 23597397 -194439761 - AluJb SINE Alu -8 304 1 468 218 39 59 chr3 23597777 23597963 -194439195 + MIR SINE MIR 17 203 -59 201 39 0 0 chr3 23598406 23598432 -194438726 + (TG)n Simple_repeat Simple_repeat 2 27 0 1727 124 3 39 chr3 23598433 23598716 -194438442 - AluJb SINE Alu -39 273 1 382 246 188 22 chr3 23599106 23599244 -194437914 + MIR SINE MIR 81 241 -21 188 302 139 12 chr3 23600059 23600145 -194437013 - L2 LINE L2 -5 3267 3171 1441 179 47 11 chr3 23600270 23600549 -194436609 - AluJo SINE Alu -19 293 5 2248 92 0 0 chr3 23600625 23600944 -194436214 + AluSq SINE Alu 1 319 0 380 279 8 33 chr3 23601593 23601715 -194435443 + L2 LINE L2 3153 3271 -1 1541 167 12 4 chr3 23602117 23602375 -194434783 - AluJo SINE Alu -14 298 39 1009 73 6 8 chr3 23602711 23602888 -194434270 - AluJb SINE Alu -13 299 86 500 79 0 40 chr3 23603580 23603656 -194433502 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2030 144 17 0 chr3 23603727 23604026 -194433132 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 23604080 23604109 -194433049 + AT_rich Low_complexity Low_complexity 1 29 0 316 308 144 11 chr3 23604513 23604644 -194432514 - MIR3 SINE MIR -32 176 30 2400 77 0 3 chr3 23605994 23606294 -194430864 - AluY SINE Alu -12 299 1 1751 171 24 0 chr3 23606556 23606849 -194430309 + AluJb SINE Alu 1 300 -12 198 266 101 101 chr3 23606858 23606944 -194430214 + MIR SINE MIR 14 102 -160 954 157 103 29 chr3 23606944 23607148 -194430010 + MER20 DNA MER1_type 1 219 0 198 266 101 101 chr3 23607148 23607219 -194429939 + MIR SINE MIR 101 171 -91 699 180 0 58 chr3 23607259 23607398 -194429760 + FLAM_A SINE Alu 2 132 -1 4692 161 33 19 chr3 23607433 23607925 -194429233 - L1MB7 LINE L1 0 6184 5671 2112 125 0 7 chr3 23607925 23608214 -194428944 + AluSx SINE Alu 8 294 -18 4692 161 33 19 chr3 23608214 23608661 -194428497 - L1MB7 LINE L1 -513 5671 5232 1910 143 0 33 chr3 23609070 23609377 -194427781 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr3 23609797 23609819 -194427339 + AT_rich Low_complexity Low_complexity 1 22 0 900 221 77 71 chr3 23611023 23611362 -194425796 + L2 LINE L2 2973 3313 0 228 384 12 43 chr3 23611532 23611696 -194425462 + L2 LINE L2 563 721 -2593 245 241 0 17 chr3 23611729 23611787 -194425371 - Charlie4 DNA MER1_type -23 1938 1882 433 334 70 67 chr3 23611894 23612033 -194425125 + L2 LINE L2 2765 2902 -370 2309 96 6 10 chr3 23612033 23612345 -194424813 + AluSq SINE Alu 1 311 -2 433 334 70 67 chr3 23612345 23612696 -194424462 + L2 LINE L2 2902 3256 -16 2027 118 0 44 chr3 23613274 23613607 -194423551 - AluSx SINE Alu 0 320 1 1646 146 60 0 chr3 23613812 23614079 -194423079 + AluSx SINE Alu 11 293 -19 311 200 0 13 chr3 23614079 23614154 -194423004 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 439 214 86 0 chr3 23614161 23614278 -194422880 + MER58C DNA MER1_type 87 213 -2 378 130 0 0 chr3 23614343 23614397 -194422761 + MER66B LTR ERV1 295 348 -138 319 282 36 55 chr3 23615852 23615962 -194421196 + L2 LINE L2 3206 3313 0 496 251 156 16 chr3 23616056 23616299 -194420859 + L1ME4a LINE L1 5531 5807 -314 1911 179 0 3 chr3 23616380 23616687 -194420471 - AluJb SINE Alu -6 306 1 418 214 83 36 chr3 23616702 23616870 -194420288 + L1ME4a LINE L1 5946 6121 0 689 208 193 24 chr3 23617065 23617277 -194419881 + MIR SINE MIR 5 252 -10 323 261 34 17 chr3 23617322 23617441 -194419717 + L1ME4a LINE L1 5573 5693 -428 350 195 37 0 chr3 23617593 23617675 -194419483 + L1ME4a LINE L1 5786 5870 -251 592 254 11 58 chr3 23617719 23617908 -194419250 + L2 LINE L2 3125 3304 -9 27 54 0 40 chr3 23618138 23618187 -194418971 + AT_rich Low_complexity Low_complexity 1 48 -23 2266 100 7 0 chr3 23618187 23618488 -194418670 - AluSx SINE Alu -9 303 1 27 54 0 40 chr3 23618488 23618512 -194418646 + AT_rich Low_complexity Low_complexity 48 71 0 524 176 0 145 chr3 23619083 23619242 -194417916 + FLAM_C SINE Alu 1 136 -7 618 273 132 9 chr3 23619320 23619540 -194417618 + MIR SINE MIR 3 249 -13 27 49 0 0 chr3 23619687 23619728 -194417430 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr3 23619916 23619947 -194417211 + AT_rich Low_complexity Low_complexity 1 31 0 2977 83 38 11 chr3 23620536 23620984 -194416174 + L1PA14 LINE L1 5700 6159 -2 711 186 111 42 chr3 23621436 23621674 -194415484 + MER33 DNA MER1_type 1 242 -82 1244 63 0 13 chr3 23621676 23621835 -194415323 - AluSp/q SINE Alu -1 312 156 475 173 25 0 chr3 23623171 23623252 -194413906 + MER5A DNA MER1_type 30 112 -77 856 194 31 47 chr3 23623304 23623495 -194413663 - MER5A DNA MER1_type 0 189 2 2321 85 0 0 chr3 23623651 23623944 -194413214 - AluSg SINE Alu -17 293 1 1264 173 35 0 chr3 23624144 23624370 -194412788 - MER46A DNA MER2_type -1 235 2 248 290 93 19 chr3 23625208 23625315 -194411843 + MIR SINE MIR 37 151 -111 2140 91 3 7 chr3 23626150 23626460 -194410698 + AluSp SINE Alu 1 309 0 1170 141 0 129 chr3 23626463 23626540 -194410618 - AluJo SINE Alu -102 210 125 2024 119 3 10 chr3 23626540 23626842 -194410316 - AluSx SINE Alu -12 300 1 1170 141 0 129 chr3 23626842 23627005 -194410153 - AluJo SINE Alu -187 125 1 333 152 36 31 chr3 23627061 23627144 -194410014 + LTR24B LTR ERV1 332 544 -32 516 238 71 0 chr3 23627190 23627316 -194409842 + FLAM_A SINE Alu 1 135 -7 418 172 0 9 chr3 23627351 23627441 -194409717 - L1ME LINE L1 -394 5772 5689 1166 224 111 43 chr3 23627441 23627839 -194409319 + L2 LINE L2 2884 3308 -5 247 244 91 102 chr3 23628144 23628341 -194408817 + MER91A DNA MER1_type 2 196 0 957 213 48 13 chr3 23628660 23628890 -194408268 - MIR SINE MIR -5 257 20 279 213 27 13 chr3 23628896 23628971 -194408187 + CT-rich Low_complexity Low_complexity 4 79 0 234 164 0 0 chr3 23629346 23629401 -194407757 + GA-rich Low_complexity Low_complexity 2 56 0 287 298 129 29 chr3 23629537 23629708 -194407450 + L2 LINE L2 2896 3083 -189 869 168 84 51 chr3 23629884 23630098 -194407060 + MIR SINE MIR 42 262 0 906 71 8 24 chr3 23630209 23630335 -194406823 + AluY SINE Alu 1 124 -187 403 176 110 0 chr3 23630846 23630937 -194406221 + MER58C DNA MER1_type 113 213 -2 378 130 0 0 chr3 23631002 23631056 -194406102 + MER66A LTR ERV1 287 340 -138 316 291 48 19 chr3 23632510 23632613 -194404545 + L2 LINE L2 3206 3311 -2 496 251 156 16 chr3 23632712 23632955 -194404203 + L1ME4a LINE L1 5531 5807 -314 1864 186 0 3 chr3 23633036 23633343 -194403815 - AluJb SINE Alu -6 306 1 418 214 83 36 chr3 23633358 23633526 -194403632 + L1ME4a LINE L1 5946 6121 0 689 208 193 24 chr3 23633721 23633933 -194403225 + MIR SINE MIR 5 252 -10 323 261 34 17 chr3 23633978 23634097 -194403061 + L1ME4a LINE L1 5573 5693 -428 350 195 37 0 chr3 23634249 23634331 -194402827 + L1ME4a LINE L1 5786 5870 -251 592 254 11 58 chr3 23634375 23634564 -194402594 + L2 LINE L2 3125 3304 -9 27 54 0 40 chr3 23634794 23634843 -194402315 + AT_rich Low_complexity Low_complexity 1 48 -23 2266 100 7 0 chr3 23634843 23635144 -194402014 - AluSx SINE Alu -9 303 1 27 54 0 40 chr3 23635144 23635168 -194401990 + AT_rich Low_complexity Low_complexity 48 71 0 524 176 0 145 chr3 23635739 23635898 -194401260 + FLAM_C SINE Alu 1 136 -7 575 273 136 14 chr3 23635976 23636196 -194400962 + MIR SINE MIR 3 249 -13 27 49 0 0 chr3 23636342 23636383 -194400775 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr3 23636571 23636602 -194400556 + AT_rich Low_complexity Low_complexity 1 31 0 2938 83 40 11 chr3 23637191 23637638 -194399520 + L1PA14 LINE L1 5700 6159 -2 711 186 111 42 chr3 23638090 23638328 -194398830 + MER33 DNA MER1_type 1 242 -82 1250 62 0 12 chr3 23638329 23638489 -194398669 - AluSp/q SINE Alu 0 313 156 475 173 25 0 chr3 23639823 23639904 -194397254 + MER5A DNA MER1_type 30 112 -77 856 194 31 47 chr3 23639956 23640147 -194397011 - MER5A DNA MER1_type 0 189 2 2321 85 0 0 chr3 23640303 23640596 -194396562 - AluSg SINE Alu -17 293 1 1264 173 35 0 chr3 23640797 23641023 -194396135 - MER46A DNA MER2_type -1 235 2 222 280 103 28 chr3 23641860 23641967 -194395191 + MIR SINE MIR 37 151 -111 2237 98 3 13 chr3 23642802 23643118 -194394040 + AluSp SINE Alu 1 313 0 2399 117 0 18 chr3 23644256 23644599 -194392559 - MER1B DNA MER1_type 0 337 1 1564 186 13 52 chr3 23644641 23644948 -194392210 + AluJo SINE Alu 1 295 -17 3171 121 75 126 chr3 23645310 23646094 -194391064 - Tigger3(Golem) DNA MER2_type -1 3028 2285 542 229 0 9 chr3 23646095 23646204 -194390954 - Tigger3(Golem) DNA MER2_type -2921 108 1 1765 139 28 24 chr3 23646456 23646743 -194390415 + AluJo SINE Alu 1 288 -24 23 0 0 0 chr3 23646815 23646838 -194390320 + AT_rich Low_complexity Low_complexity 1 23 0 2388 81 7 3 chr3 23646874 23647183 -194389975 - AluY SINE Alu -1 310 1 216 0 0 0 chr3 23647619 23647643 -194389515 + (T)n Simple_repeat Simple_repeat 1 24 0 369 296 188 29 chr3 23648437 23648624 -194388534 - MIR SINE MIR -48 214 3 830 156 6 60 chr3 23648855 23649022 -194388136 + MER3 DNA MER1_type 1 158 -51 2023 145 0 0 chr3 23649692 23649988 -194387170 + AluJb SINE Alu 2 297 -15 631 291 199 12 chr3 23651629 23652077 -194385081 - L2 LINE L2 -3 3310 2783 851 271 116 46 chr3 23652127 23652490 -194384668 - L2 LINE L2 -998 2316 1899 1695 74 4 13 chr3 23652490 23652721 -194384437 + L1PA14 LINE L1 5927 6155 -6 851 271 116 46 chr3 23652721 23652917 -194384241 - L2 LINE L2 -1415 1899 1718 272 277 50 43 chr3 23653133 23653274 -194383884 - MIR SINE MIR -43 219 78 300 249 66 76 chr3 23653501 23653698 -194383460 + L1ME4a LINE L1 5704 5898 -223 27 49 0 0 chr3 23653920 23653961 -194383197 + AT_rich Low_complexity Low_complexity 1 41 0 2046 127 13 13 chr3 23654709 23655008 -194382150 - AluSx SINE Alu -13 299 1 298 352 62 25 chr3 23655201 23655363 -194381795 - MIR3 SINE MIR -13 195 28 673 285 107 0 chr3 23656299 23656562 -194380596 + L1ME3A LINE L1 4824 5114 -1032 2702 40 3 9 chr3 23656613 23656982 -194380176 + L1PA2 LINE L1 5813 6179 0 465 235 147 113 chr3 23657023 23657465 -194379693 + L1ME3A LINE L1 5714 6170 0 1759 151 13 38 chr3 23657482 23657800 -194379358 + AluJb SINE Alu 3 312 0 21 57 0 0 chr3 23658313 23658348 -194378810 + AT_rich Low_complexity Low_complexity 1 35 0 2079 116 13 39 chr3 23658533 23658844 -194378314 - AluSx SINE Alu -9 303 1 584 188 37 126 chr3 23658847 23659024 -194378134 - MLT1B LTR MaLR -216 158 4 343 291 101 32 chr3 23659108 23659266 -194377892 - MIR3 SINE MIR -9 199 31 243 184 40 53 chr3 23659469 23659545 -194377613 - LTR33A LTR ERVL -152 371 297 318 269 28 46 chr3 23659792 23659900 -194377258 - LTR33A LTR ERVL -361 162 57 850 157 0 8 chr3 23659936 23660070 -194377088 + FLAM_C SINE Alu 1 133 0 1636 207 50 16 chr3 23660407 23660784 -194376374 - MLT1B LTR MaLR 0 390 1 2092 120 13 17 chr3 23660827 23661128 -194376030 - AluSx SINE Alu -12 300 1 206 323 0 0 chr3 23662586 23662651 -194374507 + (CTG)n Simple_repeat Simple_repeat 1 65 0 331 219 133 0 chr3 23664323 23664428 -194372730 + MIR3 SINE MIR 45 163 -45 311 291 108 25 chr3 23664710 23664868 -194372290 - MIR SINE MIR 0 262 92 427 209 55 9 chr3 23664917 23665027 -194372131 + MER103 DNA DNA 50 164 -2 860 201 86 0 chr3 23665758 23665932 -194371226 - MER5A DNA MER1_type 0 189 1 200 184 0 0 chr3 23668691 23668729 -194368429 + (CAGCC)n Simple_repeat Simple_repeat 1 38 0 2113 95 14 3 chr3 23668773 23669058 -194368100 + AluSc SINE Alu 3 290 -19 2065 140 0 0 chr3 23669067 23669353 -194367805 + AluSx SINE Alu 1 286 -26 198 128 0 0 chr3 23669353 23669392 -194367766 + (TA)n Simple_repeat Simple_repeat 2 40 0 982 242 91 22 chr3 23670577 23670940 -194366218 + LTR37A LTR ERV1 39 426 0 1589 150 35 35 chr3 23671622 23671909 -194365249 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr3 23671981 23672004 -194365154 + AT_rich Low_complexity Low_complexity 1 23 0 2386 81 10 3 chr3 23672040 23672348 -194364810 - AluY SINE Alu -1 310 1 216 0 0 0 chr3 23672784 23672808 -194364350 + (T)n Simple_repeat Simple_repeat 1 24 0 347 293 180 12 chr3 23673602 23673769 -194363389 - MIR SINE MIR -48 214 20 847 156 6 60 chr3 23674021 23674188 -194362970 + MER3 DNA MER1_type 1 158 -51 362 96 0 0 chr3 23675227 23675279 -194361879 + MADE1 DNA Mariner 29 80 0 601 205 93 25 chr3 23675401 23675545 -194361613 + MER3 DNA MER1_type 1 112 -50 1953 156 0 0 chr3 23675545 23675833 -194361325 + AluJb SINE Alu 1 288 -24 601 205 93 25 chr3 23675833 23675849 -194361309 + MER3 DNA MER1_type 112 125 -37 621 87 0 39 chr3 23675856 23675959 -194361199 - AluSc SINE Alu -13 296 198 332 143 0 0 chr3 23675972 23676021 -194361137 + MER3 DNA MER1_type 161 209 0 541 252 16 0 chr3 23676833 23676956 -194360202 + MER94 DNA DNA 10 134 0 1403 204 77 34 chr3 23677580 23677933 -194359225 - L1MC4 LINE L1 -159 7883 7516 2483 80 3 0 chr3 23677944 23678246 -194358912 - AluSg SINE Alu -7 303 1 343 222 61 40 chr3 23678343 23678442 -194358716 + U13 snRNA snRNA 1 101 -3 266 301 113 8 chr3 23679629 23679762 -194357396 + MIR SINE MIR 61 207 -55 2321 107 0 0 chr3 23679981 23680281 -194356877 + AluSg SINE Alu 1 300 -10 744 179 0 57 chr3 23680288 23680428 -194356730 + FLAM_C SINE Alu 1 132 -1 2463 76 0 0 chr3 23680432 23680736 -194356422 + AluY SINE Alu 2 305 -6 884 251 116 19 chr3 23680758 23681077 -194356081 + MLT1G1 LTR MaLR 246 595 0 273 291 68 17 chr3 23681077 23681194 -194355964 + L2 LINE L2 2883 3005 -308 980 255 97 118 chr3 23681263 23681781 -194355377 + MLT1K LTR MaLR 57 563 -25 406 147 15 0 chr3 23681830 23681898 -194355260 - MER116 DNA Mariner 0 80 12 206 378 0 52 chr3 23681902 23682003 -194355155 - L3 LINE CR1 -113 1464 1359 1463 196 60 4 chr3 23682003 23682268 -194354890 + AluJo SINE Alu 3 282 -30 447 52 0 0 chr3 23682275 23682333 -194354825 + (CA)n Simple_repeat Simple_repeat 2 59 0 206 378 0 52 chr3 23682333 23682358 -194354800 - L3 LINE CR1 -224 1353 1337 185 226 98 49 chr3 23682532 23682634 -194354524 - L3 LINE CR1 -686 891 785 492 92 0 0 chr3 23682643 23682708 -194354450 - AluJ/FRAM SINE Alu -15 297 233 395 316 96 36 chr3 23682859 23683109 -194354049 - L3 LINE CR1 -877 700 436 859 297 115 12 chr3 23683178 23683579 -194353579 - MLT1J2 LTR MaLR -8 442 1 531 101 13 0 chr3 23686622 23686701 -194350457 - AluSc SINE Alu -228 81 2 1548 169 20 24 chr3 23686730 23687025 -194350133 + AluJo SINE Alu 1 294 -18 2107 131 0 10 chr3 23687027 23687325 -194349833 + AluSx SINE Alu 1 295 -17 252 241 145 28 chr3 23689476 23689621 -194347537 - MIR SINE MIR -17 245 84 1063 106 0 0 chr3 23690704 23690845 -194346313 - AluJb SINE Alu -171 141 1 467 217 68 62 chr3 23691075 23691236 -194345922 + MER5B DNA MER1_type 4 165 -13 206 323 0 0 chr3 23692832 23692897 -194344261 + (CTG)n Simple_repeat Simple_repeat 1 65 0 331 219 133 0 chr3 23694568 23694673 -194342485 + MIR3 SINE MIR 45 163 -45 311 291 108 25 chr3 23694955 23695113 -194342045 - MIR SINE MIR 0 262 92 427 209 55 9 chr3 23695162 23695272 -194341886 + MER103 DNA DNA 50 164 -2 860 201 86 0 chr3 23696004 23696178 -194340980 - MER5A DNA MER1_type 0 189 1 200 184 0 0 chr3 23698937 23698975 -194338183 + (CAGCC)n Simple_repeat Simple_repeat 1 38 0 2113 95 14 3 chr3 23699019 23699304 -194337854 + AluSc SINE Alu 3 290 -19 2065 140 0 0 chr3 23699313 23699599 -194337559 + AluSx SINE Alu 1 286 -26 198 128 0 0 chr3 23699599 23699638 -194337520 + (TA)n Simple_repeat Simple_repeat 2 40 0 988 243 91 19 chr3 23700823 23701185 -194335973 + LTR37A LTR ERV1 39 426 0 2128 103 0 7 chr3 23701869 23702150 -194335008 + AluSx SINE Alu 1 279 -33 486 0 0 0 chr3 23702150 23702204 -194334954 + (CA)n Simple_repeat Simple_repeat 1 54 0 423 287 69 0 chr3 23704293 23704394 -194332764 - MER91C DNA MER1_type 0 140 33 1777 172 55 44 chr3 23705358 23705719 -194331439 + MLT1A1 LTR MaLR 1 365 0 427 309 42 16 chr3 23706899 23707090 -194330068 - MIR3 SINE MIR -11 197 2 536 185 92 36 chr3 23707254 23707294 -194329864 + MER33 DNA MER1_type 29 65 -2520 2271 105 20 0 chr3 23707294 23707588 -194329570 + AluSx SINE Alu 1 300 -12 536 185 92 36 chr3 23707588 23707742 -194329416 + MER33 DNA MER1_type 65 234 -90 1268 225 57 7 chr3 23707742 23708022 -194329136 + AluJo SINE Alu 1 294 -18 2348 105 0 3 chr3 23708043 23708338 -194328820 + AluSg SINE Alu 1 294 -16 243 297 0 11 chr3 23708349 23708440 -194328718 + MER33 DNA MER1_type 269 358 -5 348 179 15 0 chr3 23708641 23708708 -194328450 + MER66B LTR ERV1 419 486 0 351 216 0 181 chr3 23708716 23708887 -194328271 - L1MEd LINE L1 -5092 1027 888 2419 97 0 0 chr3 23708900 23709200 -194327958 + AluSg SINE Alu 6 305 -5 186 43 0 0 chr3 23709337 23709360 -194327798 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 242 284 38 72 chr3 23709381 23709511 -194327647 - L1MEd LINE L1 -5306 813 693 2072 128 27 3 chr3 23709511 23709807 -194327351 - AluSx SINE Alu -9 303 1 242 284 38 72 chr3 23709807 23709912 -194327246 - L1MEd LINE L1 -5426 693 586 244 333 28 0 chr3 23710288 23710360 -194326798 + MIR3 SINE MIR 82 155 -53 473 289 160 0 chr3 23710365 23710521 -194326637 - MER5A DNA MER1_type 0 189 9 190 359 26 0 chr3 23710598 23710676 -194326482 + L2 LINE L2 2973 3052 -220 296 292 14 0 chr3 23710776 23710848 -194326310 + L2 LINE L2 3241 3313 0 2616 43 0 0 chr3 23711383 23711683 -194325475 - AluY SINE Alu -11 300 1 1998 129 0 18 chr3 23712473 23712759 -194324399 + AluSx SINE Alu 1 281 -31 468 0 0 0 chr3 23712759 23712811 -194324347 + (CA)n Simple_repeat Simple_repeat 1 52 0 423 287 69 0 chr3 23714899 23715000 -194322158 - MER91C DNA MER1_type 0 140 33 1777 172 55 44 chr3 23715963 23716324 -194320834 + MLT1A1 LTR MaLR 1 365 0 427 309 42 16 chr3 23717503 23717694 -194319464 - MIR3 SINE MIR -11 197 2 536 185 92 36 chr3 23717858 23717898 -194319260 + MER33 DNA MER1_type 29 65 -2520 2271 105 20 0 chr3 23717898 23718192 -194318966 + AluSx SINE Alu 1 300 -12 536 185 92 36 chr3 23718192 23718346 -194318812 + MER33 DNA MER1_type 65 234 -90 1070 249 65 0 chr3 23718346 23718607 -194318551 + AluJo SINE Alu 1 278 -34 226 220 47 33 chr3 23718798 23718948 -194318210 - L1M4 LINE L1 -1703 4443 4292 30 45 0 0 chr3 23719397 23719441 -194317717 + AT_rich Low_complexity Low_complexity 1 44 0 267 352 29 48 chr3 23719586 23719796 -194317362 - L2 LINE L2 -109 3163 2958 652 242 62 11 chr3 23719895 23720073 -194317085 - MER5A DNA MER1_type -2 187 1 1684 113 0 5 chr3 23720536 23720758 -194316400 + AluSp SINE Alu 1 221 -92 2120 102 0 4 chr3 23720758 23721032 -194316126 + AluSx SINE Alu 24 297 -15 384 163 174 81 chr3 23721708 23721880 -194315278 - MER53 DNA DNA 0 189 2 2452 89 3 0 chr3 23722885 23723188 -194313970 + AluSp SINE Alu 1 304 -9 192 171 29 0 chr3 23723955 23723990 -194313168 - L2 LINE L2 -14 3299 3264 225 257 68 152 chr3 23723993 23724114 -194313044 + MIR SINE MIR 33 126 -136 2487 99 0 0 chr3 23724114 23724426 -194312732 + AluSx SINE Alu 1 312 0 225 257 68 152 chr3 23724426 23724541 -194312617 + MIR SINE MIR 126 249 -13 297 0 0 0 chr3 23724609 23724642 -194312516 + (TG)n Simple_repeat Simple_repeat 1 33 0 215 250 21 0 chr3 23724672 23724720 -194312438 + MIR SINE MIR 196 244 -18 225 133 44 0 chr3 23724727 23724772 -194312386 + CT-rich Low_complexity Low_complexity 1 47 0 2368 211 2 2 chr3 23725514 23725965 -194311193 - MER82 DNA MER2_type 0 653 203 1095 197 5 0 chr3 23726289 23726482 -194310676 - MER82 DNA MER2_type -459 194 1 255 61 0 0 chr3 23726655 23726688 -194310470 + (CA)n Simple_repeat Simple_repeat 1 33 0 380 296 43 9 chr3 23726769 23726884 -194310274 + L2 LINE L2 3194 3312 -1 1617 185 39 45 chr3 23727006 23727314 -194309844 - AluJb SINE Alu -6 306 1 667 257 170 44 chr3 23727871 23728276 -194308882 + MLT1H LTR MaLR 94 549 0 1893 141 31 10 chr3 23728280 23728570 -194308588 - AluJo SINE Alu -1 311 16 391 184 54 12 chr3 23728575 23728677 -194308481 - MIR SINE MIR -46 162 50 1876 121 80 39 chr3 23728887 23729275 -194307883 + L1MB3 LINE L1 5740 6143 -40 257 200 0 0 chr3 23729297 23729347 -194307811 + L1MB2 LINE L1 6115 6164 -7 1231 183 5 36 chr3 23729801 23730025 -194307133 - AluJo SINE Alu -10 302 86 513 194 62 44 chr3 23730276 23730436 -194306722 - L1MC4 LINE L1 -139 7903 7741 700 275 116 72 chr3 23731680 23732069 -194305089 - L2 LINE L2 0 3313 2908 251 343 84 14 chr3 23732307 23732450 -194304708 - L3b LINE CR1 -100 1483 1331 2246 103 3 19 chr3 23733108 23733420 -194303738 - AluSx SINE Alu -5 307 1 203 196 22 0 chr3 23733650 23733696 -194303462 + L2 LINE L2 3210 3256 -16 189 171 0 0 chr3 23733992 23734027 -194303131 + A-rich Low_complexity Low_complexity 1 35 0 652 240 13 7 chr3 23734685 23734839 -194302319 + MER3 DNA MER1_type 1 155 -54 2164 131 0 0 chr3 23734842 23735140 -194302018 + AluSx SINE Alu 4 301 -11 1426 105 5 0 chr3 23735247 23735437 -194301721 + AluSg/x SINE Alu 106 296 -16 25 0 0 0 chr3 23735444 23735469 -194301689 + AT_rich Low_complexity Low_complexity 1 25 0 317 313 129 79 chr3 23735672 23736075 -194301083 - L2 LINE L2 -14 3258 2836 2455 70 0 10 chr3 23736381 23736683 -194300475 + AluY SINE Alu 1 299 -12 610 189 9 0 chr3 23736711 23736847 -194300311 + AluJb SINE Alu 180 316 0 2008 137 3 17 chr3 23736979 23737279 -194299879 - AluSx SINE Alu -16 296 1 302 265 88 52 chr3 23737777 23737913 -194299245 + MIR SINE MIR 110 250 -12 237 235 68 53 chr3 23738345 23738477 -194298681 + MER102a DNA MER1_type 189 322 -8 723 284 15 20 chr3 23738557 23738761 -194298397 - MIR SINE MIR -17 245 43 243 293 13 0 chr3 23739180 23739255 -194297903 + HAL1 LINE L1 1651 1726 -781 * 602 234 117 12 chr3 23739244 23739500 -194297658 + HAL1 LINE L1 2072 2354 -153 270 30 0 0 chr3 23739644 23739677 -194297481 - U2 snRNA snRNA -155 33 1 982 205 24 0 chr3 23739681 23739847 -194297311 - FAM SINE Alu -3 172 3 193 260 14 82 chr3 23739882 23739955 -194297203 - L2 LINE L2 -575 2739 2672 * 216 254 0 18 chr3 23739927 23739982 -194297176 - MER5B DNA MER1_type -105 73 20 265 290 0 75 chr3 23741395 23741488 -194295670 - L2 LINE L2 0 3272 3187 454 360 40 18 chr3 23741615 23741843 -194295315 - MIR SINE MIR -10 252 20 1575 144 0 0 chr3 23741899 23742128 -194295030 + AluJb SINE Alu 1 229 -83 1147 151 0 22 chr3 23742580 23742759 -194294399 - AluJ SINE Alu -9 303 129 844 137 0 38 chr3 23742777 23742908 -194294250 + FLAM_C SINE Alu 1 126 -7 524 120 40 0 chr3 23742920 23742995 -194294163 - AluJ SINE Alu -176 136 59 1956 147 23 0 chr3 23743411 23743711 -194293447 - AluJb SINE Alu -1 311 5 2718 149 11 7 chr3 23744077 23744534 -194292624 + LTR32 LTR ERVL 12 470 -1 2097 97 4 0 chr3 23744690 23744957 -194292201 + AluSq SINE Alu 5 272 -41 4514 72 40 2 chr3 23744958 23745541 -194291617 - LTR14B LTR ERVK 0 608 4 989 232 29 37 chr3 23745741 23745982 -194291176 - MER8 DNA MER2_type 0 239 1 638 176 21 114 chr3 23745982 23746091 -194291067 + Charlie4 DNA MER1_type 1778 1866 -95 1822 177 0 32 chr3 23746091 23746401 -194290757 + AluJb SINE Alu 1 300 -12 638 176 21 114 chr3 23746401 23746473 -194290685 + Charlie4 DNA MER1_type 1866 1943 -18 244 235 39 0 chr3 23746591 23746642 -194290516 + MIR SINE MIR 29 81 -181 550 215 83 14 chr3 23746687 23746831 -194290327 + MIR SINE MIR 70 223 -39 2239 119 0 0 chr3 23747004 23747297 -194289861 + AluSx SINE Alu 1 293 -19 600 279 59 10 chr3 23747343 23747547 -194289611 - LTR16C LTR ERVL 0 491 278 942 206 47 12 chr3 23748736 23748993 -194288165 + L1ME1 LINE L1 5846 6111 -55 2232 118 7 0 chr3 23749044 23749341 -194287817 + AluSx SINE Alu 1 299 -13 335 91 0 0 chr3 23749342 23749386 -194287772 + Alu SINE Alu 1 44 -258 229 132 0 0 chr3 23749466 23749504 -194287654 - Charlie5 DNA MER1_type -27 2585 2548 1285 194 18 122 chr3 23749508 23749837 -194287321 - AluJb SINE Alu -7 295 1 24 0 0 0 chr3 23749842 23749866 -194287292 + AT_rich Low_complexity Low_complexity 1 24 0 977 132 7 0 chr3 23749869 23750005 -194287153 + AluSq/x SINE Alu 1 137 -175 2284 113 0 3 chr3 23750006 23750298 -194286860 + AluSg SINE Alu 4 294 -16 243 297 0 11 chr3 23750309 23750400 -194286758 + Charlie5 DNA MER1_type 2491 2580 -32 630 109 11 0 chr3 23752462 23752554 -194284604 + MLT1A2 LTR MaLR 1 93 -281 1229 102 0 68 chr3 23752557 23752597 -194284561 - MSTA LTR MaLR -2 426 385 2190 131 0 10 chr3 23752597 23752911 -194284247 + AluSx SINE Alu 1 311 -1 1229 102 0 68 chr3 23752911 23753075 -194284083 - MSTA LTR MaLR -43 385 236 1068 162 0 0 chr3 23753120 23753287 -194283871 - AluSx SINE Alu -2 308 142 1021 104 0 56 chr3 23753346 23753490 -194283668 - AluSx SINE Alu -177 136 1 906 196 42 0 chr3 23753490 23753679 -194283479 - MSTA LTR MaLR -231 197 1 403 174 0 0 chr3 23753679 23753748 -194283410 + MLT1A2 LTR MaLR 90 158 -216 2233 109 13 0 chr3 23754376 23754678 -194282480 + AluSq SINE Alu 1 306 -7 402 253 167 43 chr3 23754913 23755075 -194282083 - MIR3 SINE MIR -17 191 10 2184 78 19 85 chr3 23755589 23755908 -194281250 - AluSq SINE Alu -15 298 1 2319 116 0 0 chr3 23757529 23757832 -194279326 + AluSq SINE Alu 6 308 -5 323 271 32 65 chr3 23758181 23758336 -194278822 + L1MC5 LINE L1 7763 7912 -49 484 36 0 0 chr3 23759824 23759880 -194277278 - AluSq/x SINE Alu -175 138 83 2036 108 0 18 chr3 23760357 23760643 -194276515 + AluSq SINE Alu 1 281 -32 470 259 121 20 chr3 23761284 23761589 -194275569 + L1MC5 LINE L1 7609 7944 -17 2083 138 3 0 chr3 23761752 23762050 -194275108 + AluSx SINE Alu 1 299 -13 233 390 40 0 chr3 23762229 23762329 -194274829 - L3b LINE CR1 -184 1399 1296 315 219 184 9 chr3 23762554 23762668 -194274490 - MIR3 SINE MIR -38 170 37 231 356 79 0 chr3 23763687 23763788 -194273370 + L2 LINE L2 3200 3308 -5 1860 153 27 20 chr3 23765181 23765482 -194271676 - AluJb SINE Alu -9 303 1 187 237 0 26 chr3 23765561 23765599 -194271559 - L2 LINE L2 -86 3186 3150 791 220 49 4 chr3 23765615 23765819 -194271339 + MIR SINE MIR 27 238 -24 1028 185 34 15 chr3 23766104 23766309 -194270849 + MER3 DNA MER1_type 1 209 0 2138 189 12 24 chr3 23766570 23766989 -194270169 - MLT2D LTR ERVL 0 414 1 1733 147 62 7 chr3 23767112 23767404 -194269754 + AluJb SINE Alu 1 308 -4 797 252 125 49 chr3 23767799 23768271 -194268887 + MLT1J LTR MaLR 2 509 -2 2113 111 31 14 chr3 23768757 23768884 -194268274 + AluSx SINE Alu 1 124 -188 2358 96 7 3 chr3 23768884 23769187 -194267971 + AluSg SINE Alu 1 304 -6 2113 111 31 14 chr3 23769187 23769347 -194267811 + AluSx SINE Alu 124 293 -19 459 276 97 42 chr3 23769638 23769855 -194267303 + MLT1K LTR MaLR 162 390 -198 182 361 62 0 chr3 23770518 23770615 -194266543 + MIR SINE MIR 94 196 -66 250 340 11 0 chr3 23770941 23771035 -194266123 + MIR SINE MIR 168 262 0 583 297 80 25 chr3 23771085 23771324 -194265834 - MIR SINE MIR -7 255 4 1838 163 3 36 chr3 23771382 23771688 -194265470 - AluSx SINE Alu -16 296 1 199 333 11 46 chr3 23772127 23772214 -194264944 - L3b LINE CR1 -63 1520 1437 811 245 96 71 chr3 23772284 23772814 -194264344 + MLT1H1 LTR MaLR 2 555 0 450 0 0 0 chr3 23773422 23773472 -194263686 + (CA)n Simple_repeat Simple_repeat 2 51 0 238 263 114 0 chr3 23774400 23774514 -194262644 - L1ME4a LINE L1 -21 6100 5974 328 211 133 37 chr3 23774520 23774720 -194262438 - MER5C DNA MER1_type -4 320 41 2169 125 7 0 chr3 23774752 23775049 -194262109 + AluSx SINE Alu 1 299 -13 2072 131 10 0 chr3 23775385 23775683 -194261475 + AluJo SINE Alu 1 301 -11 1755 133 16 0 chr3 23775689 23775937 -194261221 + AluSx SINE Alu 1 252 -60 315 0 0 0 chr3 23775957 23775992 -194261166 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 605 215 37 0 chr3 23776575 23776710 -194260448 - MIR SINE MIR -118 144 5 301 298 162 44 chr3 23777063 23777291 -194259867 + L2 LINE L2 3006 3260 -12 512 298 186 21 chr3 23778138 23778558 -194258600 + L2 LINE L2 2820 3308 -5 1812 166 7 3 chr3 23778564 23778859 -194258299 + AluSx SINE Alu 1 296 -16 1709 192 99 12 chr3 23779375 23779896 -194257262 - MER82 DNA MER2_type -9 644 23 2113 70 0 114 chr3 23779907 23780249 -194256909 + AluSg SINE Alu 1 303 -7 286 300 67 0 chr3 23780478 23780568 -194256590 + L2 LINE L2 3193 3288 -25 970 217 65 7 chr3 23780637 23780913 -194256245 + MER33 DNA MER1_type 28 319 -5 246 294 152 0 chr3 23781133 23781225 -194255933 + L2 LINE L2 3184 3289 -24 1515 156 0 43 chr3 23781277 23781534 -194255624 + AluJo SINE Alu 5 250 -62 435 196 0 62 chr3 23781710 23781822 -194255336 + MER3 DNA MER1_type 52 156 -53 1152 141 0 0 chr3 23781826 23781989 -194255169 + AluSg/x SINE Alu 133 295 -17 272 196 18 0 chr3 23781991 23782047 -194255111 + MER3 DNA MER1_type 153 209 0 243 191 0 0 chr3 23785110 23785173 -194251985 + CT-rich Low_complexity Low_complexity 1 63 0 631 225 0 0 chr3 23786356 23786476 -194250682 + FLAM_C SINE Alu 8 127 -16 485 171 166 68 chr3 23787155 23787272 -194249886 - MER2 DNA MER2_type 0 345 241 789 132 0 37 chr3 23787272 23787408 -194249750 + FLAM_C SINE Alu 1 131 -2 485 171 166 68 chr3 23787408 23787495 -194249663 - MER2 DNA MER2_type -104 241 121 1445 169 0 5 chr3 23787505 23787724 -194249434 + AluJb SINE Alu 11 228 -84 405 245 15 21 chr3 23787874 23788201 -194248957 + G-rich Low_complexity Low_complexity 1 325 0 357 247 53 12 chr3 23788128 23788298 -194248860 + (CGGGG)n Simple_repeat Simple_repeat 2 178 0 * 906 284 120 18 chr3 23788350 23788807 -194248351 - L2 LINE L2 -1056 2258 1755 189 107 0 0 chr3 23788999 23789027 -194248131 + (A)n Simple_repeat Simple_repeat 1 28 0 1871 149 0 0 chr3 23789502 23789777 -194247381 + AluJb SINE Alu 35 309 -3 198 244 24 0 chr3 23789785 23789826 -194247332 - MIR SINE MIR -220 42 1 2992 102 9 11 chr3 23789890 23789949 -194247209 + L1PA15 LINE L1 5721 5779 -386 2146 126 30 0 chr3 23789949 23790250 -194246908 + AluSx SINE Alu 3 312 0 2992 102 9 11 chr3 23790250 23790623 -194246535 + L1PA15 LINE L1 5779 6152 -13 237 189 75 0 chr3 23790630 23790683 -194246475 - MER41B LTR ERV1 -98 537 481 2178 163 73 29 chr3 23790769 23791179 -194245979 + MSTA LTR MaLR 1 428 0 9930 159 16 16 chr3 23791179 23791528 -194245630 + MSTA-int LTR MaLR 1 349 -1302 2416 97 0 3 chr3 23791528 23791839 -194245319 + AluSg SINE Alu 1 310 0 9930 159 16 16 chr3 23791839 23793141 -194244017 + MSTA-int LTR MaLR 349 1651 0 2200 137 77 50 chr3 23793141 23793518 -194243640 + MSTA LTR MaLR 1 391 -37 2390 109 0 0 chr3 23793518 23793820 -194243338 - AluSg SINE Alu -8 302 1 2200 137 77 50 chr3 23793820 23793859 -194243299 + MSTA LTR MaLR 391 428 0 316 286 160 11 chr3 23793859 23794034 -194243124 + MIR SINE MIR 61 261 -1 2363 109 0 0 chr3 23794211 23794514 -194242644 + AluSg SINE Alu 1 303 -7 764 179 0 57 chr3 23794518 23794658 -194242500 + AluJo SINE Alu 1 132 -170 2014 92 3 35 chr3 23794662 23794978 -194242180 + AluY SINE Alu 2 307 -4 1566 235 3 3 chr3 23795278 23795584 -194241574 - AluJo SINE Alu -6 306 1 314 177 38 0 chr3 23796738 23796817 -194240341 + (CCCCG)n Simple_repeat Simple_repeat 2 83 0 227 130 19 0 chr3 23796837 23796891 -194240267 + C-rich Low_complexity Low_complexity 3 57 0 30 0 0 0 chr3 23796975 23797005 -194240153 + GC_rich Low_complexity Low_complexity 1 30 0 1139 169 0 0 chr3 23797185 23797363 -194239795 + AluJo SINE Alu 120 297 -15 1566 235 3 3 chr3 23797439 23797745 -194239413 - AluJo SINE Alu -6 306 1 358 303 56 79 chr3 23798658 23798925 -194238233 + LTR16C LTR ERVL 231 491 0 255 152 0 0 chr3 23798963 23799009 -194238149 + T-rich Low_complexity Low_complexity 1 46 0 2453 86 3 3 chr3 23799813 23800115 -194237043 - AluSp SINE Alu -11 302 1 1586 150 18 71 chr3 23800239 23800579 -194236579 - L1MC1 LINE L1 0 6333 6012 1881 169 0 26 chr3 23800739 23801052 -194236106 + AluJo SINE Alu 1 305 -7 1904 149 21 0 chr3 23801244 23801532 -194235626 + AluSx SINE Alu 1 294 -18 1449 176 23 46 chr3 23801785 23802092 -194235066 - AluJb SINE Alu -12 300 1 1775 158 23 20 chr3 23802467 23802771 -194234387 - AluJo SINE Alu -7 305 1 297 237 53 38 chr3 23802771 23802841 -194234317 - L1M4 LINE L1 -2256 3890 3816 720 238 59 25 chr3 23802841 23803043 -194234115 - MER63A DNA MER1_type -1 209 1 297 237 53 38 chr3 23803043 23803103 -194234055 - L1M4 LINE L1 -2330 3816 3758 613 243 35 7 chr3 23803205 23803349 -194233809 + MER5B DNA MER1_type 31 178 0 619 189 141 5 chr3 23803357 23803518 -194233640 - MER5A DNA MER1_type 0 189 4 471 343 60 16 chr3 23803549 23803797 -194233361 - L1M4 LINE L1 -2581 3565 3307 1574 168 10 30 chr3 23803835 23804138 -194233020 + AluJb SINE Alu 7 303 -9 467 313 31 19 chr3 23804341 23804501 -194232657 - L2 LINE L2 0 3313 3152 1875 113 60 0 chr3 23804501 23804783 -194232375 + AluSq SINE Alu 1 299 -14 2051 118 3 0 chr3 23804786 23805105 -194232053 + AluSp SINE Alu 1 320 0 25 0 0 0 chr3 23805430 23805455 -194231703 + GC_rich Low_complexity Low_complexity 1 25 0 1559 147 40 0 chr3 23806211 23806484 -194230674 + AluSx SINE Alu 22 305 -7 1873 138 17 0 chr3 23806579 23806876 -194230282 - AluJo SINE Alu -10 302 1 1875 167 74 54 chr3 23806914 23807416 -194229742 + Charlie1b DNA MER1_type 1 512 -11 587 287 21 5 chr3 23807500 23807688 -194229470 - MER113 DNA MER1_type? -96 425 235 2018 124 0 0 chr3 23807868 23808159 -194228999 + AluY SINE Alu 1 291 -20 692 191 38 0 chr3 23808185 23808316 -194228842 - MER2 DNA MER2_type -209 136 1 263 237 79 0 chr3 23808334 23808410 -194228748 + L1ME4a LINE L1 5936 6017 -104 1076 150 0 0 chr3 23808565 23808732 -194228426 + AluSp SINE Alu 137 303 -10 673 263 31 13 chr3 23808732 23808973 -194228185 - L2 LINE L2 -311 3002 2759 756 275 45 28 chr3 23809077 23809324 -194227834 - L2 LINE L2 -1886 1428 1178 577 319 10 0 chr3 23809388 23809592 -194227566 + L2 LINE L2 966 1171 -2143 302 167 0 0 chr3 23809593 23809635 -194227523 - Alu SINE Alu -261 42 1 1984 100 45 3 chr3 23809662 23809953 -194227205 - AluSg SINE Alu -7 303 1 1641 137 10 40 chr3 23810217 23810516 -194226642 + AluJo SINE Alu 16 305 -7 1595 192 0 3 chr3 23810638 23810929 -194226229 + AluJo SINE Alu 1 290 -22 2032 112 7 7 chr3 23812010 23812325 -194224833 + AluSx SINE Alu 3 312 0 793 98 0 0 chr3 23812327 23812429 -194224729 + U6 snRNA snRNA 1 102 -5 240 346 39 70 chr3 23812475 23812732 -194224426 + L3 LINE CR1 179 427 -1150 509 300 31 19 chr3 23812904 23813064 -194224094 - L2 LINE L2 0 3313 3152 1863 117 60 0 chr3 23813064 23813346 -194223812 + AluSq SINE Alu 1 299 -14 2051 118 3 0 chr3 23813349 23813668 -194223490 + AluSp SINE Alu 1 320 0 389 265 178 29 chr3 23813760 23813986 -194223172 + L2 LINE L2 2826 3112 -201 1889 126 91 31 chr3 23813986 23814336 -194222822 + THE1C LTR MaLR 3 373 -2 389 265 178 29 chr3 23814336 23814418 -194222740 + L2 LINE L2 3112 3180 -133 834 140 0 44 chr3 23814422 23814558 -194222600 - FLAM_C SINE Alu -3 130 1 1726 287 39 43 chr3 23814590 23815290 -194221868 - L2 LINE L2 -542 2772 2076 868 302 115 12 chr3 23815870 23816271 -194220887 + MLT1J2 LTR MaLR 1 442 -8 490 316 96 36 chr3 23816340 23816590 -194220568 + L3 LINE CR1 436 700 -877 495 92 0 0 chr3 23816741 23816806 -194220352 + AluJ/FRAM SINE Alu 233 297 -15 216 266 102 31 chr3 23816815 23816943 -194220215 + L3 LINE CR1 785 921 -656 248 360 43 43 chr3 23817062 23817116 -194220042 + L3 LINE CR1 1301 1354 -223 447 52 0 0 chr3 23817116 23817174 -194219984 + (TG)n Simple_repeat Simple_repeat 2 59 0 1356 196 60 4 chr3 23817181 23817446 -194219712 - AluJo SINE Alu -30 282 3 248 360 43 43 chr3 23817446 23817547 -194219611 + L3 LINE CR1 1359 1464 -113 398 147 15 0 chr3 23817551 23817619 -194219539 + MER116 DNA Mariner 12 80 0 999 255 97 118 chr3 23817668 23818186 -194218972 - MLT1K LTR MaLR -25 563 57 303 291 68 17 chr3 23818255 23818372 -194218786 - L2 LINE L2 -308 3005 2883 917 248 114 35 chr3 23818372 23818713 -194218445 - MLT1G1 LTR MaLR 0 595 214 2266 79 7 0 chr3 23818713 23819016 -194218142 - AluY SINE Alu -5 306 2 917 248 114 35 chr3 23819016 23819049 -194218109 - MLT1G1 LTR MaLR -381 214 185 982 278 102 35 chr3 23819185 23819239 -194217919 - L2 LINE L2 -449 2865 2816 1102 203 37 5 chr3 23819239 23819456 -194217702 + MER58A DNA MER1_type 1 224 0 982 278 102 35 chr3 23819456 23819775 -194217383 - L2 LINE L2 -498 2816 2467 24 0 0 0 chr3 23820009 23820033 -194217125 + AT_rich Low_complexity Low_complexity 1 24 0 1781 155 7 7 chr3 23820033 23820324 -194216834 - AluSx SINE Alu -21 291 1 1333 165 12 35 chr3 23820734 23821012 -194216146 - AluJb SINE Alu 0 309 38 1728 165 35 0 chr3 23821222 23821507 -194215651 + AluSx SINE Alu 1 295 -17 2009 103 3 10 chr3 23821552 23821854 -194215304 + AluY SINE Alu 1 300 -11 298 292 14 0 chr3 23822389 23822461 -194214697 - L2 LINE L2 0 3313 3241 188 359 26 0 chr3 23822561 23822639 -194214519 - L2 LINE L2 -220 3052 2973 442 284 168 0 chr3 23822715 23822870 -194214288 + MER5A DNA MER1_type 9 189 0 210 338 42 0 chr3 23822875 23822946 -194214212 - MIR3 SINE MIR -53 155 82 321 286 12 0 chr3 23823322 23823406 -194213752 + L1MEd LINE L1 586 670 -5449 1889 135 20 3 chr3 23823427 23823724 -194213434 + AluSx SINE Alu 1 302 -10 1224 170 9 5 chr3 23824228 23824446 -194212712 - AluJo SINE Alu -17 295 77 2156 101 10 0 chr3 23824510 23824808 -194212350 + AluSx SINE Alu 1 301 -11 2035 109 7 0 chr3 23825586 23825869 -194211289 - AluSx SINE Alu -25 287 3 1595 192 0 3 chr3 23826963 23827254 -194209904 - AluJo SINE Alu -22 290 1 1641 137 10 40 chr3 23827376 23827675 -194209483 - AluJo SINE Alu -7 305 16 2019 100 45 0 chr3 23827939 23828229 -194208929 + AluSg SINE Alu 1 303 -7 302 167 0 0 chr3 23828256 23828298 -194208860 + Alu SINE Alu 1 42 -260 577 319 10 0 chr3 23828299 23828503 -194208655 - L2 LINE L2 -2143 1171 966 756 275 45 28 chr3 23828567 23828814 -194208344 + L2 LINE L2 1178 1428 -1886 673 263 31 13 chr3 23828918 23829159 -194207999 + L2 LINE L2 2759 3002 -311 1076 150 0 0 chr3 23829159 23829326 -194207832 - AluSp SINE Alu -10 303 137 263 237 79 0 chr3 23829481 23829557 -194207601 - L1ME4a LINE L1 -104 6017 5936 692 191 38 0 chr3 23829575 23829706 -194207452 + MER2 DNA MER2_type 1 136 -209 967 147 32 0 chr3 23829732 23829889 -194207269 - AluJb SINE Alu -20 292 131 1690 169 0 29 chr3 23830140 23830454 -194206704 - AluJo SINE Alu -7 305 1 1552 153 18 71 chr3 23830614 23830954 -194206204 + L1MC1 LINE L1 6012 6333 0 2167 108 3 0 chr3 23831078 23831373 -194205785 + AluSx SINE Alu 1 296 -16 3536 141 34 9 chr3 23831378 23831956 -194205202 - LTR8A LTR ERV1 -50 677 60 44182 46 4 2 chr3 23831956 23838022 -194199136 + L1PA4 LINE L1 20 6094 -61 1636 181 3 16 chr3 23838423 23838727 -194198431 - AluJb SINE Alu -12 300 1 26 50 0 0 chr3 23838877 23838917 -194198241 + AT_rich Low_complexity Low_complexity 1 40 0 32 67 0 0 chr3 23839070 23839130 -194198028 + AT_rich Low_complexity Low_complexity 1 60 0 1425 175 4 4 chr3 23840069 23840321 -194196837 - AluJo SINE Alu -26 286 35 289 291 58 0 chr3 23840374 23840460 -194196698 + MIR SINE MIR 160 250 -12 2467 52 20 0 chr3 23841035 23841340 -194195818 + AluY SINE Alu 1 311 0 192 308 45 70 chr3 23841979 23842135 -194195023 + L2 LINE L2 2900 3051 -221 2133 98 7 0 chr3 23842659 23842956 -194194202 - AluSq SINE Alu -13 300 2 1000 213 29 53 chr3 23843027 23843416 -194193742 - MER74A LTR ERVL 0 558 131 407 219 12 0 chr3 23843452 23843534 -194193624 - MER74A LTR ERVL -434 124 42 353 244 33 0 chr3 23843540 23843630 -194193528 - L1 LINE L1 -1678 4468 4376 22609 126 51 25 chr3 23844041 23845956 -194191202 + L1MA3 LINE L1 16 1878 -5846 2584 91 14 3 chr3 23845956 23846307 -194190851 - THE1A LTR MaLR 0 355 1 11826 90 10 5 chr3 23846307 23847879 -194189279 - THE1A-int LTR MaLR 0 1580 1 2854 51 17 3 chr3 23847879 23848229 -194188929 - THE1A LTR MaLR 0 355 1 22609 126 51 25 chr3 23848229 23848717 -194188441 + L1MA3 LINE L1 1878 2352 -5372 2074 103 0 3 chr3 23848717 23849008 -194188150 + AluY SINE Alu 1 290 -21 22609 126 51 25 chr3 23849008 23849646 -194187512 + L1MA3 LINE L1 2352 2972 -4752 1237 177 117 8 chr3 23849646 23849911 -194187247 + AluJb SINE Alu 1 294 -18 22609 126 51 25 chr3 23849911 23851204 -194185954 + L1MA3 LINE L1 2972 4229 -3495 2160 114 0 10 chr3 23851204 23851512 -194185646 + AluSx SINE Alu 1 305 -7 22609 126 51 25 chr3 23851512 23852351 -194184807 + L1MA3 LINE L1 4229 5044 -2680 1721 162 6 22 chr3 23852351 23852666 -194184492 + AluJb SINE Alu 1 310 -2 22609 126 51 25 chr3 23852666 23853357 -194183801 + L1MA3 LINE L1 5044 7724 0 878 298 140 20 chr3 23853465 23853871 -194183287 - LTR16B LTR ERVL -2 462 8 307 272 140 15 chr3 23854062 23854198 -194182960 + MIR SINE MIR 77 229 -33 184 333 15 0 chr3 23854652 23854718 -194182440 + MIR3 SINE MIR 88 154 -54 1170 126 6 0 chr3 23854727 23854901 -194182257 + MER5B DNA MER1_type 4 178 0 814 172 30 30 chr3 23855266 23855435 -194181723 - L1ME3 LINE L1 -45 6117 5949 290 279 155 0 chr3 23855593 23855722 -194181436 - MLT1H LTR MaLR -19 530 382 1739 179 132 26 chr3 23855829 23855882 -194181276 + LTR65 LTR ERV1 3 49 -620 2581 129 58 17 chr3 23855882 23856293 -194180865 + MSTA LTR MaLR 1 428 0 1739 179 132 26 chr3 23856293 23856657 -194180501 + LTR65 LTR ERV1 49 464 -205 281 114 57 136 chr3 23856670 23856758 -194180400 + L1MB7 LINE L1 6096 6176 -2 2043 151 0 0 chr3 23856951 23857262 -194179896 - AluJb SINE Alu -1 311 1 964 200 6 0 chr3 23857426 23857606 -194179552 + LTR65 LTR ERV1 489 669 0 465 244 10 57 chr3 23857682 23857848 -194179310 - MLT1F LTR MaLR -240 169 1 830 123 8 16 chr3 23859247 23859369 -194177789 - L1MC1 LINE L1 -1 6332 6212 1859 164 11 0 chr3 23859395 23859676 -194177482 - AluSx SINE Alu -28 284 1 583 245 117 12 chr3 23860541 23860704 -194176454 + MER5A DNA MER1_type 1 180 -9 584 184 12 7 chr3 23861073 23861311 -194175847 + MLT1F1 LTR MaLR 2 372 -170 403 276 167 13 chr3 23862161 23862317 -194174841 - MIR SINE MIR -69 193 14 2083 173 5 67 chr3 23862339 23862450 -194174708 + MLT1B LTR MaLR 1 117 -273 2415 85 0 10 chr3 23862450 23862756 -194174402 + AluSg SINE Alu 1 303 -7 2083 173 5 67 chr3 23862756 23863060 -194174098 + MLT1B LTR MaLR 117 390 0 2218 103 38 0 chr3 23863496 23863788 -194173370 - AluSx SINE Alu -9 303 1 200 299 146 22 chr3 23863860 23863997 -194173161 - L2 LINE L2 0 3313 3160 2202 154 31 8 chr3 23864002 23864358 -194172800 + MLT1A1 LTR MaLR 2 365 0 2060 147 0 0 chr3 23864491 23864791 -194172367 - AluSx SINE Alu -8 304 5 209 191 59 73 chr3 23865451 23865519 -194171639 - MIR SINE MIR -180 82 16 208 280 133 40 chr3 23865549 23865699 -194171459 - L2 LINE L2 -160 3112 2949 284 270 226 7 chr3 23866053 23866190 -194170968 + MIR SINE MIR 7 173 -89 318 266 39 23 chr3 23866704 23866832 -194170326 - MLT1G1 LTR MaLR -465 130 1 1129 256 158 10 chr3 23866834 23867500 -194169658 + L2 LINE L2 2524 3313 0 1792 149 7 7 chr3 23867504 23867810 -194169348 + AluSx SINE Alu 1 306 0 30 27 0 0 chr3 23868758 23868795 -194168363 + AT_rich Low_complexity Low_complexity 1 37 0 256 217 0 117 chr3 23869397 23869517 -194167641 + MIR SINE MIR 106 211 -51 494 204 136 14 chr3 23869614 23869761 -194167397 + MER103 DNA DNA 2 166 0 4263 181 55 0 chr3 23870672 23871468 -194165690 - L1ME1 LINE L1 -5 6161 5322 240 111 0 0 chr3 23871468 23871504 -194165654 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 914 159 27 104 chr3 23871505 23871725 -194165433 - AluJb SINE Alu -24 288 86 1958 142 0 0 chr3 23871750 23872032 -194165126 - AluSx SINE Alu -18 294 13 1520 209 22 43 chr3 23872043 23872489 -194164669 - L1ME1 LINE L1 -821 5325 4889 410 285 231 8 chr3 23872469 23872725 -194164433 - L1MC4a LINE L1 -1974 5834 5522 * 1178 227 126 66 chr3 23873867 23874383 -194162775 - MLT1H LTR MaLR 0 549 3 393 245 201 0 chr3 23874450 23874589 -194162569 - MIR SINE MIR -65 197 31 245 172 35 0 chr3 23875459 23875517 -194161641 + GA-rich Low_complexity Low_complexity 1 60 0 420 104 0 0 chr3 23875520 23875587 -194161571 + (CA)n Simple_repeat Simple_repeat 2 68 0 234 246 18 0 chr3 23877169 23877226 -194159932 - Charlie4 DNA MER1_type -4 1957 1900 556 179 45 0 chr3 23877303 23877415 -194159743 + L2 LINE L2 3197 3313 0 629 286 47 20 chr3 23877600 23878039 -194159119 - LTR33 LTR ERVL 0 521 19 238 330 42 34 chr3 23878402 23878520 -194158638 - L2 LINE L2 -1 3271 3153 2282 97 3 3 chr3 23879051 23879349 -194157809 + AluSp SINE Alu 1 298 -15 488 262 18 37 chr3 23879581 23879745 -194157413 - MLT1H LTR MaLR 0 549 389 532 238 45 21 chr3 23879864 23880022 -194157136 - MIR SINE MIR -58 150 36 678 111 0 10 chr3 23880133 23880232 -194156926 - AluSg/x SINE Alu -9 303 206 266 209 110 22 chr3 23880741 23880832 -194156326 - L1MC5 LINE L1 -23 7938 7840 2512 78 0 0 chr3 23880951 23881260 -194155898 - AluY SINE Alu -2 309 1 1864 141 0 27 chr3 23881270 23881569 -194155589 - AluJb SINE Alu -21 291 1 1818 148 7 7 chr3 23881596 23881873 -194155285 + AluSx SINE Alu 1 277 -35 931 234 24 5 chr3 23882064 23882269 -194154889 + MER3 DNA MER1_type 1 209 0 2030 119 3 10 chr3 23882318 23882611 -194154547 + AluSc SINE Alu 1 291 -18 2205 116 0 0 chr3 23883158 23883450 -194153708 + AluSq SINE Alu 1 292 -21 354 321 107 6 chr3 23884368 23884536 -194152622 - L1MC/D LINE L1 -2163 5645 5461 1774 161 76 20 chr3 23885214 23885556 -194151602 - MER46B DNA MER2_type 0 236 1 2280 88 0 10 chr3 23886749 23887044 -194150114 - AluSg SINE Alu -18 292 1 2285 115 3 10 chr3 23887395 23887709 -194149449 + AluSx SINE Alu 1 312 0 683 230 75 5 chr3 23887717 23887904 -194149254 + MIR SINE MIR 3 202 -60 325 228 53 26 chr3 23888202 23888316 -194148842 + L1MC4 LINE L1 7926 8042 0 566 234 98 33 chr3 23888994 23889178 -194147980 - L1ME LINE L1 -414 5707 5512 368 236 154 16 chr3 23889329 23889452 -194147706 + MIR SINE MIR 75 214 -48 356 330 88 71 chr3 23889467 23889819 -194147339 - L2 LINE L2 0 3272 2915 2393 90 0 0 chr3 23890149 23890450 -194146708 + AluSq SINE Alu 1 301 -12 1331 193 0 36 chr3 23890951 23891225 -194145933 + AluJo SINE Alu 39 302 -10 705 234 61 51 chr3 23891573 23891934 -194145224 - L1MEc LINE L1 -4706 1877 1445 22 0 0 0 chr3 23892180 23892202 -194144956 + AT_rich Low_complexity Low_complexity 1 22 0 336 276 145 26 chr3 23892213 23892456 -194144702 + L1ME4a LINE L1 5549 5762 -359 2119 125 0 10 chr3 23892456 23892761 -194144397 - AluSc SINE Alu -7 302 1 336 276 145 26 chr3 23892761 23892796 -194144362 + L1ME4a LINE L1 5762 5791 -330 1633 181 7 7 chr3 23892796 23893095 -194144063 + AluJb SINE Alu 1 299 -13 336 276 145 26 chr3 23893095 23893307 -194143851 + L1ME4a LINE L1 5791 6119 -2 21 95 0 0 chr3 23893342 23893405 -194143753 + AT_rich Low_complexity Low_complexity 1 63 0 1570 184 7 17 chr3 23894263 23894551 -194142607 - AluJb SINE Alu -25 287 3 828 212 5 52 chr3 23894857 23895050 -194142108 + MER5A DNA MER1_type 2 185 -4 463 188 0 10 chr3 23896344 23896445 -194140713 + L1MEc LINE L1 715 814 -5582 2093 121 0 38 chr3 23896446 23896761 -194140397 - AluSx SINE Alu -9 303 1 12200 65 5 1 chr3 23896784 23899113 -194138045 - L1PA6 LINE L1 0 6154 3893 4530 70 51 14 chr3 23899113 23899759 -194137399 + L1PA6 LINE L1 3229 3898 -2248 3661 110 18 75 chr3 23899776 23900404 -194136754 - L1PB2 LINE L1 -3 6148 5557 225 65 0 0 chr3 23903620 23903651 -194133507 + (CAG)n Simple_repeat Simple_repeat 2 32 0 297 152 106 15 chr3 23903700 23903766 -194133392 - MER103 DNA DNA -33 133 62 207 0 0 0 chr3 23903905 23903928 -194133230 + (TC)n Simple_repeat Simple_repeat 2 24 0 2377 149 50 36 chr3 23903979 23904456 -194132702 - L1MB2 LINE L1 -6 6165 5682 1616 174 26 19 chr3 23904776 23905086 -194132072 - AluJb SINE Alu 0 312 1 1540 199 51 3 chr3 23905089 23905263 -194131895 - AluJb SINE Alu -2 310 115 192 77 0 0 chr3 23905263 23905289 -194131869 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1540 199 51 3 chr3 23905289 23905410 -194131748 - AluJb SINE Alu -197 115 1 2532 54 0 7 chr3 23905834 23906131 -194131027 + AluSc SINE Alu 1 295 -14 1799 157 3 20 chr3 23906387 23906692 -194130466 + AluJo SINE Alu 1 300 -12 587 259 23 8 chr3 23908834 23908965 -194128193 + FLAM_A SINE Alu 1 133 0 261 252 74 96 chr3 23909919 23910014 -194127144 - MLT1L LTR MaLR 0 615 522 2225 101 0 7 chr3 23910014 23910310 -194126848 + AluSg1 SINE Alu 1 294 -15 261 252 74 96 chr3 23910310 23910349 -194126809 - MLT1L LTR MaLR -93 522 484 479 285 68 38 chr3 23910465 23910728 -194126430 - MLT1L LTR MaLR -324 291 21 823 110 47 47 chr3 23912258 23912269 -194124889 - AluJo SINE Alu -178 134 124 216 0 0 0 chr3 23912269 23912293 -194124865 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 823 110 47 47 chr3 23912293 23912408 -194124750 - AluJo SINE Alu -187 125 8 833 144 40 0 chr3 23912528 23912653 -194124505 - FLAM_C SINE Alu -3 130 1 641 161 190 33 chr3 23914955 23915166 -194121992 - Charlie1 DNA MER1_type -94 2667 2424 1162 170 47 28 chr3 23915314 23915526 -194121632 - MER20 DNA MER1_type -2 217 2 1358 136 47 21 chr3 23915973 23916208 -194120950 - MER2 DNA MER2_type -96 249 9 348 277 55 118 chr3 23916214 23916294 -194120864 + L1MC4a LINE L1 5606 5689 -432 1800 173 0 26 chr3 23916294 23916601 -194120557 + AluJb SINE Alu 5 303 -9 348 277 55 118 chr3 23916601 23916750 -194120408 + L1MC4a LINE L1 5689 5815 -306 2122 104 3 11 chr3 23916750 23917037 -194120121 + AluSx SINE Alu 1 285 -27 348 277 55 118 chr3 23917037 23917123 -194120035 + L1MC4a LINE L1 5815 5905 -216 1770 168 81 12 chr3 23917158 23917480 -194119678 + MER2 DNA MER2_type 1 344 0 1689 174 22 4 chr3 23917987 23918263 -194118895 + AluJo SINE Alu 1 281 -31 711 278 128 26 chr3 23919253 23919487 -194117671 + MIR SINE MIR 5 262 0 201 200 40 20 chr3 23921205 23921255 -194115903 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 2806 267 146 42 chr3 23921675 23921959 -194115199 + L2 LINE L2 1525 1778 -1535 180 0 0 0 chr3 23921959 23921979 -194115179 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2145 108 0 3 chr3 23921981 23922269 -194114889 - AluSx SINE Alu -25 287 1 2806 267 146 42 chr3 23922269 23923057 -194114101 + L2 LINE L2 1778 2483 -830 1646 173 14 11 chr3 23923057 23923335 -194113823 - AluJo SINE Alu -1 311 33 2806 267 146 42 chr3 23923335 23923891 -194113267 + L2 LINE L2 2483 3311 -2 354 367 105 46 chr3 23923865 23924170 -194112988 - L2 LINE L2 -10 3262 2940 * 2207 115 0 0 chr3 23924184 23924472 -194112686 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr3 23924691 23924713 -194112445 + AT_rich Low_complexity Low_complexity 1 22 0 1800 153 17 3 chr3 23924818 23925113 -194112045 + AluJo SINE Alu 1 299 -13 1076 202 37 125 chr3 23925161 23925376 -194111782 + L1ME3A LINE L1 5728 5891 -273 2097 134 7 3 chr3 23925376 23925682 -194111476 + AluSx SINE Alu 1 307 -5 1076 202 37 125 chr3 23925682 23925874 -194111284 + L1ME3A LINE L1 5891 6098 -66 211 175 0 0 chr3 23926182 23926222 -194110936 - L2 LINE L2 -2 3311 3272 22 0 0 0 chr3 23926287 23926309 -194110849 + AT_rich Low_complexity Low_complexity 1 22 0 202 137 118 0 chr3 23926442 23926493 -194110665 + MIR SINE MIR 81 137 -71 910 210 116 17 chr3 23928990 23929223 -194107935 - L3 LINE CR1 -11 1566 1311 231 159 32 63 chr3 23929366 23929429 -194107729 + MARNA DNA Mariner 10 70 -516 898 242 42 12 chr3 23930712 23930952 -194106206 - MIR SINE MIR 0 262 16 413 232 30 20 chr3 23931096 23931195 -194105963 - L2 LINE L2 -11 3261 3162 1242 157 32 14 chr3 23932236 23932452 -194104706 - L1PA15 LINE L1 -7 6158 5939 1233 255 50 12 chr3 23932600 23932941 -194104217 + L1MC1 LINE L1 3 356 -6186 828 219 26 10 chr3 23932942 23933134 -194104024 + L1MC1 LINE L1 2951 3145 -3499 1750 89 0 0 chr3 23933134 23933347 -194103811 + AluSq SINE Alu 79 291 -22 5055 194 139 78 chr3 23933350 23933964 -194103194 + L1MC1 LINE L1 3541 4116 -2715 2212 93 14 0 chr3 23933964 23934254 -194102904 + AluSp SINE Alu 1 294 -19 5055 194 139 78 chr3 23934254 23934407 -194102751 + L1MC1 LINE L1 4116 4258 -2573 1090 165 0 6 chr3 23934407 23934577 -194102581 + AluJb SINE Alu 85 253 -59 5055 194 139 78 chr3 23934577 23935959 -194101199 + L1MC1 LINE L1 4258 6025 -806 2431 97 0 0 chr3 23935959 23936269 -194100889 - AluSx SINE Alu -2 310 1 5055 194 139 78 chr3 23936269 23936399 -194100759 + L1MC1 LINE L1 6025 6146 -685 772 161 22 0 chr3 23936399 23936536 -194100622 + L1MC1 LINE L1 6421 6560 -271 823 243 80 13 chr3 23936997 23937223 -194099935 + MIR SINE MIR 22 262 0 407 276 21 48 chr3 23937285 23937511 -194099647 + MIR SINE MIR 56 242 -20 872 313 40 29 chr3 23937639 23938083 -194099075 - LTR16B LTR ERVL -2 462 14 323 253 123 39 chr3 23938329 23938483 -194098675 + MIR SINE MIR 81 247 -15 2355 97 0 3 chr3 23939055 23939366 -194097792 - AluSx SINE Alu -2 310 1 656 262 35 23 chr3 23939717 23939889 -194097269 + MIR SINE MIR 40 213 -49 945 286 74 15 chr3 23939925 23940264 -194096894 + MLT1H1 LTR MaLR 1 359 -196 319 140 88 0 chr3 23940316 23940373 -194096785 + MLT1H1 LTR MaLR 450 511 -19 1413 215 133 52 chr3 23940625 23941128 -194096030 - LTR10B LTR ERV1 -3 544 1 2368 107 0 0 chr3 23941148 23941458 -194095700 + AluSx SINE Alu 1 310 -2 363 307 79 0 chr3 23941560 23941687 -194095471 - MIR3 SINE MIR -42 166 30 2243 102 7 0 chr3 23942216 23942510 -194094648 + AluSp SINE Alu 1 296 -17 837 142 156 0 chr3 23942510 23942651 -194094507 + AluSg/x SINE Alu 134 296 -16 786 112 112 26 chr3 23943228 23943344 -194093814 + AluSp SINE Alu 2 127 -186 273 290 61 53 chr3 23943804 23943935 -194093223 + MIR SINE MIR 56 187 -75 998 189 22 0 chr3 23943971 23944156 -194093002 - MER5A DNA MER1_type 0 189 1 1767 227 93 47 chr3 23944556 23944912 -194092246 - MLT1F LTR MaLR 0 542 153 2235 100 3 0 chr3 23944912 23945202 -194091956 - AluSg SINE Alu -19 291 1 1767 227 93 47 chr3 23945202 23945361 -194091797 - MLT1F LTR MaLR -389 153 3 775 282 85 20 chr3 23945488 23945935 -194091223 + LTR33 LTR ERVL 39 514 -7 1044 307 49 43 chr3 23945992 23946181 -194090977 + MLT1K LTR MaLR 2 188 -400 2314 92 3 0 chr3 23946181 23946476 -194090682 + AluY SINE Alu 1 296 -15 1044 307 49 43 chr3 23946476 23946817 -194090341 + MLT1K LTR MaLR 188 535 -53 202 267 0 0 chr3 23946817 23946862 -194090296 + GA-rich Low_complexity Low_complexity 3 47 0 189 0 0 0 chr3 23947068 23947089 -194090069 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 233 285 146 13 chr3 23947216 23947374 -194089784 + MIR SINE MIR 51 229 -33 1934 250 32 26 chr3 23947783 23948118 -194089040 + MLT1F LTR MaLR 2 343 -199 2194 176 31 64 chr3 23948118 23948601 -194088557 - MLT1C LTR MaLR 0 467 1 1934 250 32 26 chr3 23948601 23948801 -194088357 + MLT1F LTR MaLR 343 540 -2 2249 53 0 0 chr3 23952971 23953290 -194083868 + AluY SINE Alu 21 339 0 889 183 0 0 chr3 23953302 23953475 -194083683 - FLAM_A SINE Alu 0 173 1 766 261 52 63 chr3 23953509 23953728 -194083430 + L1MC/D LINE L1 5258 5473 -2335 2027 149 0 0 chr3 23953728 23954030 -194083128 - AluJb SINE Alu -8 304 3 766 261 52 63 chr3 23954030 23954193 -194082965 + L1MC/D LINE L1 5473 5636 -2172 1195 127 6 0 chr3 23954196 23954369 -194082789 - AluSp SINE Alu -3 310 137 2012 74 0 31 chr3 23954606 23954864 -194082294 + AluY SINE Alu 50 299 -12 659 247 17 28 chr3 23955828 23956006 -194081152 - MER5B DNA MER1_type -2 176 1 888 208 147 116 chr3 23956407 23956628 -194080530 - L1ME4a LINE L1 0 6121 5908 2162 124 3 0 chr3 23956628 23956934 -194080224 + AluSq SINE Alu 1 307 -6 888 208 147 116 chr3 23956934 23957199 -194079959 - L1ME4a LINE L1 -213 5908 5612 2127 116 20 0 chr3 23957199 23957491 -194079667 - AluSx SINE Alu -14 298 1 888 208 147 116 chr3 23957491 23957580 -194079578 - L1ME4a LINE L1 -509 5612 5527 1026 176 54 17 chr3 23957610 23957996 -194079162 + LTR37B LTR ERV1 4 468 0 2247 151 33 3 chr3 23958333 23958670 -194078488 + MER7A DNA MER2_type 2 346 0 1168 295 199 29 chr3 23959412 23960397 -194076761 + L3 LINE CR1 322 1473 -104 479 246 47 35 chr3 23961137 23961308 -194075850 + MER5B DNA MER1_type 1 173 -5 244 206 234 19 chr3 23961348 23961455 -194075703 + MER5A DNA MER1_type 40 169 -20 * 486 146 101 0 chr3 23961380 23961469 -194075689 - MER5A DNA MER1_type -83 106 9 1400 215 35 24 chr3 23964034 23964374 -194072784 - MER2 DNA MER2_type 0 344 1 645 268 179 30 chr3 23964969 23965376 -194071782 - L2 LINE L2 -31 3282 2815 479 298 32 27 chr3 23965375 23965563 -194071595 + L2 LINE L2 2615 2803 -511 * 199 346 0 0 chr3 23967477 23967529 -194069629 - MIR SINE MIR -127 81 30 1463 96 0 10 chr3 23967595 23967793 -194069365 + AluSg/x SINE Alu 99 294 -16 901 208 27 11 chr3 23967887 23968070 -194069088 - MER5A DNA MER1_type 0 189 4 470 215 108 8 chr3 23968419 23968549 -194068609 + L1MEd LINE L1 16 158 -5961 2180 102 3 3 chr3 23969299 23969608 -194067550 + AluSq SINE Alu 1 309 0 1337 176 12 33 chr3 23969793 23970037 -194067121 + AluJb SINE Alu 1 239 -73 1836 157 33 13 chr3 23970510 23970816 -194066342 - AluJo SINE Alu 0 312 1 6529 136 75 45 chr3 23971453 23971466 -194065692 + L1MC1 LINE L1 318 329 -6097 2226 78 4 0 chr3 23971466 23971795 -194065363 + AluY SINE Alu 1 330 0 6529 136 75 45 chr3 23971795 23972297 -194064861 + L1MC1 LINE L1 329 814 -5612 1738 135 31 35 chr3 23972297 23972586 -194064572 + AluSx SINE Alu 1 288 -24 6529 136 75 45 chr3 23972586 23973340 -194063818 + L1MC1 LINE L1 814 1633 -4793 2174 131 147 11 chr3 23973340 23973715 -194063443 - MSTA LTR MaLR 0 428 3 6529 136 75 45 chr3 23973715 23973772 -194063386 + L1MC1 LINE L1 1633 1687 -4739 2491 231 24 23 chr3 23973783 23974080 -194063078 + L1MC1 LINE L1 2287 2582 -3844 2561 122 34 6 chr3 23974080 23974434 -194062724 + THE1B LTR MaLR 1 364 0 2491 231 24 23 chr3 23974434 23975423 -194061735 + L1MC1 LINE L1 2582 3677 -2749 2497 80 0 0 chr3 23975423 23975724 -194061434 + AluSq SINE Alu 3 303 -10 2491 231 24 23 chr3 23975724 23976028 -194061130 + L1MC1 LINE L1 3677 3979 -2447 2051 224 37 26 chr3 23976028 23976517 -194060641 + MLT2B2 LTR ERVL 1 494 -21 5571 107 102 28 chr3 23976517 23977602 -194059556 + MER11A LTR ERVK 1 1266 0 841 223 0 38 chr3 23977628 23977683 -194059475 + L1MC1 LINE L1 3974 4030 -2396 497 73 118 0 chr3 23977683 23977751 -194059407 + MADE1 DNA Mariner 1 76 -4 841 223 0 38 chr3 23977751 23977879 -194059279 + L1MC1 LINE L1 4030 4150 -2276 696 198 8 0 chr3 23977879 23978000 -194059158 + AluJb SINE Alu 179 300 -12 2950 214 62 67 chr3 23978000 23978496 -194058662 + L1MC1 LINE L1 4168 4665 -1761 2391 77 20 0 chr3 23978496 23978793 -194058365 + AluY SINE Alu 1 303 -8 2950 214 62 67 chr3 23978793 23979059 -194058099 + L1MC1 LINE L1 4665 4928 -1498 1566 181 3 36 chr3 23979059 23979368 -194057790 + AluJo SINE Alu 6 304 -8 2950 214 62 67 chr3 23979368 23979580 -194057578 + L1MC1 LINE L1 4928 5139 -1287 645 173 0 153 chr3 23979581 23979731 -194057427 - FLAM_A SINE Alu -10 132 6 4178 153 34 69 chr3 23979738 23980188 -194056970 + L1MC1 LINE L1 5123 5587 -1026 2199 95 20 10 chr3 23980188 23980492 -194056666 + AluSc SINE Alu 1 307 -2 4178 153 34 69 chr3 23980492 23980692 -194056466 + L1MC1 LINE L1 5587 5792 -821 2198 101 0 7 chr3 23980692 23980988 -194056170 - AluSp SINE Alu -19 294 1 4178 153 34 69 chr3 23980988 23981525 -194055633 + L1MC1 LINE L1 5792 6286 -327 1192 202 9 0 chr3 23981525 23981732 -194055426 + L1MC1 LINE L1 6119 6333 0 1012 310 88 47 chr3 23981732 23982424 -194054734 + L1ME3A LINE L1 169 896 -5223 1971 158 3 0 chr3 23982424 23982728 -194054430 + AluJb SINE Alu 1 305 -7 1012 310 88 47 chr3 23982728 23982746 -194054412 + L1ME3A LINE L1 896 912 -5207 242 256 83 23 chr3 23982784 23982906 -194054252 + L1ME3A LINE L1 1021 1153 -4966 1777 173 36 7 chr3 23982906 23983207 -194053951 + AluJo SINE Alu 1 310 -2 460 279 198 19 chr3 23983248 23983556 -194053602 + L1ME3A LINE L1 1153 1515 -4614 187 175 25 38 chr3 23983752 23983832 -194053326 + GA-rich Low_complexity Low_complexity 3 81 0 1554 229 219 16 chr3 23984101 23984607 -194052551 + MLT1E1 LTR MaLR 39 647 -7 582 295 48 53 chr3 23984615 23985089 -194052069 + HAL1b LINE L1 181 652 -696 345 259 0 27 chr3 23985112 23985224 -194051934 + HAL1b LINE L1 733 841 -507 360 274 79 24 chr3 23985231 23985395 -194051763 + L1ME3A LINE L1 3090 3262 -2867 892 150 14 0 chr3 23985522 23985662 -194051496 - AluSg/x SINE Alu -7 305 164 371 312 93 60 chr3 23985926 23986195 -194050963 - MLT1J LTR MaLR -137 374 97 576 125 231 81 chr3 23986219 23986379 -194050779 - MER53 DNA DNA -3 186 3 271 95 0 0 chr3 23986512 23986554 -194050604 - L1MC5 LINE L1 -436 7525 7484 501 245 198 35 chr3 23986819 23987269 -194049889 + MLT1H LTR MaLR 1 549 0 584 278 180 19 chr3 23987276 23987950 -194049208 + L1ME3A LINE L1 4940 5753 -408 236 229 74 90 chr3 23987970 23988092 -194049066 + L1ME3A LINE L1 5948 6067 -86 2363 85 0 0 chr3 23988535 23988829 -194048329 - AluSc SINE Alu -9 300 7 1469 55 76 114 chr3 23990249 23990486 -194046672 + MER30 DNA MER1_type 1 228 -2 450 292 62 25 chr3 23990974 23991135 -194046023 - MER5B DNA MER1_type -4 174 8 2215 131 3 0 chr3 23991254 23991559 -194045599 - AluSx SINE Alu -6 306 1 308 217 64 77 chr3 23991610 23991740 -194045418 + L1ME3 LINE L1 6040 6332 -2 2587 135 8 3 chr3 23991839 23992201 -194044957 + THE1B LTR MaLR 1 364 0 10962 101 30 62 chr3 23992203 23993648 -194043510 + THE1B-int LTR MaLR 3 1392 -188 2388 81 0 0 chr3 23993648 23993945 -194043213 - AluY SINE Alu -14 297 1 10962 101 30 62 chr3 23993945 23994129 -194043029 + THE1B-int LTR MaLR 1392 1580 0 2542 108 14 6 chr3 23994131 23994484 -194042674 + THE1B LTR MaLR 8 363 -1 600 196 77 14 chr3 23996370 23996513 -194040645 - MIR SINE MIR -106 156 5 420 322 40 40 chr3 23996533 23996682 -194040476 + L2 LINE L2 3124 3272 0 214 346 63 79 chr3 23997442 23997696 -194039462 - L2 LINE L2 0 3272 3023 582 237 8 8 chr3 23997890 23998008 -194039150 + FLAM_A SINE Alu 1 118 -15 508 267 144 78 chr3 23998036 23998306 -194038852 - L2 LINE L2 -25 3247 2960 375 311 18 30 chr3 23998312 23998476 -194038682 - L2 LINE L2 -852 2462 2301 812 253 118 0 chr3 23998715 23998936 -194038222 - MIR SINE MIR -15 247 1 2137 94 14 0 chr3 23999000 23999275 -194037883 + AluSp SINE Alu 1 279 -34 315 49 0 0 chr3 23999290 23999331 -194037827 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 466 258 40 7 chr3 23999949 24000100 -194037058 + L1M4 LINE L1 2724 2879 -3267 483 189 36 0 chr3 24000116 24000227 -194036931 + L1M4 LINE L1 3208 3322 -2824 * 1292 218 73 46 chr3 24000222 24000745 -194036413 + L1M4 LINE L1 2876 3412 -2734 293 124 56 101 chr3 24001321 24001410 -194035748 - L1ME4a LINE L1 -3 6118 6034 2469 100 0 0 chr3 24001410 24001720 -194035438 + AluSx SINE Alu 1 310 -2 1363 192 22 11 chr3 24002293 24002569 -194034589 + AluJo SINE Alu 19 297 -15 228 67 0 0 chr3 24002896 24002926 -194034232 + (TG)n Simple_repeat Simple_repeat 2 31 0 2314 86 0 26 chr3 24003193 24003495 -194033663 - AluSc SINE Alu -15 294 1 2298 83 7 20 chr3 24003544 24003709 -194033449 - AluSq SINE Alu -15 298 137 2342 93 7 0 chr3 24003709 24004010 -194033148 - AluSp SINE Alu -10 303 1 2298 83 7 20 chr3 24004010 24004146 -194033012 - AluSq SINE Alu -176 137 1 417 208 0 0 chr3 24004659 24004736 -194032422 + MER103 DNA DNA 51 127 -39 183 288 25 88 chr3 24005770 24005850 -194031308 - L2 LINE L2 -3 3310 3236 2121 122 3 32 chr3 24006031 24006343 -194030815 + AluSx SINE Alu 2 304 -8 349 286 38 68 chr3 24006346 24006430 -194030728 + MIR SINE MIR 23 103 -159 2248 118 0 3 chr3 24006430 24006734 -194030424 + AluSx SINE Alu 1 303 -9 349 286 38 68 chr3 24006734 24006782 -194030376 + MIR SINE MIR 103 151 -111 234 261 0 15 chr3 24006812 24006877 -194030281 + MIR SINE MIR 137 200 -62 1624 209 0 7 chr3 24006882 24007178 -194029980 - AluJb SINE Alu -18 294 1 1204 204 46 24 chr3 24007433 24007761 -194029397 + MER2 DNA MER2_type 2 336 -9 320 269 0 54 chr3 24007983 24008076 -194029082 - L1MC4 LINE L1 -1340 6702 6615 236 229 0 83 chr3 24008078 24008174 -194028984 + L1MC4 LINE L1 6615 6702 -1340 324 202 0 111 chr3 24008212 24008311 -194028847 + L1MC4 LINE L1 6615 6702 -1340 * 340 221 11 63 chr3 24008284 24008379 -194028779 - L1MC4 LINE L1 -1339 6703 6614 21 36 0 0 chr3 24008392 24008420 -194028738 + AT_rich Low_complexity Low_complexity 1 28 0 1093 174 72 81 chr3 24008745 24009079 -194028079 + L1MA9 LINE L1 5946 6276 -36 2212 83 0 3 chr3 24009141 24009430 -194027728 - AluSx SINE Alu -19 293 6 270 124 56 101 chr3 24009435 24009524 -194027634 + L1ME4a LINE L1 6034 6118 -3 194 253 0 25 chr3 24009779 24009858 -194027300 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 305 336 29 0 chr3 24009858 24009962 -194027196 - L1MC4 LINE L1 -1322 6720 6614 560 416 0 0 chr3 24009968 24010323 -194026835 + (CGTG)n Simple_repeat Simple_repeat 1 355 0 195 250 0 0 chr3 24010390 24010442 -194026716 + (TA)n Simple_repeat Simple_repeat 1 52 0 274 233 0 44 chr3 24010444 24010534 -194026624 - L1MC4 LINE L1 -1342 6700 6615 1690 165 0 20 chr3 24010537 24010834 -194026324 - AluJb SINE Alu -21 291 1 2216 93 0 13 chr3 24011100 24011413 -194025745 - AluSc SINE Alu 0 309 1 2050 117 3 3 chr3 24012160 24012459 -194024699 - AluSx SINE Alu -13 299 1 1883 168 0 0 chr3 24012688 24012997 -194024161 - AluJb SINE Alu -3 309 1 419 246 8 87 chr3 24013461 24013587 -194023571 + FLAM_A SINE Alu 1 116 -17 1886 155 3 0 chr3 24013590 24013900 -194023258 - AluJb SINE Alu -1 311 1 617 180 18 0 chr3 24013900 24014011 -194023147 - MLT1B LTR MaLR -277 113 1 417 288 159 12 chr3 24014040 24014203 -194022955 + MIR SINE MIR 21 207 -55 215 346 63 18 chr3 24015515 24015622 -194021536 - MIR SINE MIR -79 129 49 2294 91 0 0 chr3 24015622 24015919 -194021239 - AluSg SINE Alu -13 297 1 215 346 63 18 chr3 24015919 24015954 -194021204 - MIR SINE MIR -159 49 17 1048 167 24 33 chr3 24016869 24017079 -194020079 - MER3 DNA MER1_type 0 209 2 316 264 82 150 chr3 24017609 24017962 -194019196 - L2 LINE L2 -50 3222 2894 1576 158 12 0 chr3 24018848 24019107 -194018051 + AluSx SINE Alu 25 286 -26 2317 57 0 0 chr3 24019297 24019638 -194017520 - AluY SINE Alu 0 341 1 24 0 0 0 chr3 24019641 24019665 -194017493 + AT_rich Low_complexity Low_complexity 1 24 0 1672 123 105 4 chr3 24019683 24019960 -194017198 - AluSx SINE Alu -7 305 1 2163 107 7 0 chr3 24020991 24021299 -194015859 - AluSg SINE Alu 0 310 1 387 351 27 0 chr3 24021450 24021598 -194015560 + MIR SINE MIR 47 198 -64 370 141 202 50 chr3 24021582 24021681 -194015477 - L2 LINE L2 0 3313 3200 * 21 0 0 0 chr3 24021913 24021934 -194015224 + AT_rich Low_complexity Low_complexity 1 21 0 182 215 38 139 chr3 24022182 24022220 -194014938 + L3 LINE CR1 822 862 -715 489 257 46 29 chr3 24022220 24022395 -194014763 + MER5B DNA MER1_type 1 178 0 497 264 196 0 chr3 24022395 24022543 -194014615 - MER5A DNA MER1_type -12 177 1 182 215 38 139 chr3 24022395 24022514 -194014644 + L3 LINE CR1 862 963 -614 * 2075 183 87 28 chr3 24022567 24023026 -194014132 - MLT1D LTR MaLR -2 503 18 1075 179 50 10 chr3 24023113 24023314 -194013844 - LTR16C LTR ERVL 0 491 283 340 273 152 15 chr3 24023681 24023813 -194013345 - MIR SINE MIR -14 248 99 784 289 47 16 chr3 24023870 24024123 -194013035 + MIR SINE MIR 2 262 0 387 282 43 17 chr3 24025619 24025736 -194011422 + MIR3 SINE MIR 85 204 -4 256 33 0 0 chr3 24025941 24025971 -194011187 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 522 188 0 19 chr3 24025971 24026125 -194011033 + C-rich Low_complexity Low_complexity 3 153 0 1559 150 15 11 chr3 24026127 24026400 -194010758 - AluJb SINE Alu -38 274 1 534 276 55 0 chr3 24026405 24026550 -194010608 + MIR SINE MIR 104 256 -6 2400 44 0 14 chr3 24026639 24026936 -194010222 - AluY SINE Alu -18 293 1 285 283 202 25 chr3 24027022 24027220 -194009938 + MIR SINE MIR 21 253 -9 890 143 0 0 chr3 24027825 24027958 -194009200 - FLAM_C SINE Alu -10 133 1 43 47 0 0 chr3 24027968 24028032 -194009126 + AT_rich Low_complexity Low_complexity 1 64 0 495 223 23 39 chr3 24028052 24028182 -194008976 + L1MC/D LINE L1 5442 5569 -2239 188 260 271 10 chr3 24028371 24028467 -194008691 + MIR3 SINE MIR 15 135 -73 311 290 30 10 chr3 24028629 24028729 -194008429 + L1MC4a LINE L1 4976 5077 -1069 342 0 0 0 chr3 24028798 24028835 -194008323 - tRNA-Gly-GGG tRNA tRNA -37 37 1 318 254 190 14 chr3 24028841 24028983 -194008175 + L1MC4a LINE L1 5156 5322 -824 1502 269 32 13 chr3 24028987 24029072 -194008086 + L1MC4a LINE L1 5351 5433 -2375 1741 152 4 4 chr3 24029072 24029348 -194007810 + AluJb SINE Alu 1 276 -36 1502 269 32 13 chr3 24029348 24029723 -194007435 + L1MC4a LINE L1 5433 5820 -1988 839 168 0 0 chr3 24029731 24029868 -194007290 + FLAM_C SINE Alu 6 142 -1 371 246 40 137 chr3 24029879 24029921 -194007237 + L1MC4a LINE L1 5832 5876 -1932 1550 188 55 0 chr3 24029921 24030214 -194006944 + 7SLRNA srpRNA srpRNA 1 309 -11 371 246 40 137 chr3 24030214 24030419 -194006739 + L1MC4a LINE L1 5876 6055 -1753 197 300 30 50 chr3 24030615 24030715 -194006443 - MIR3 SINE MIR -6 202 105 362 280 36 52 chr3 24031781 24031856 -194005302 - L1MC4 LINE L1 0 8042 7967 1958 155 9 79 chr3 24031856 24031934 -194005224 + MLT1B LTR MaLR 1 83 -307 2114 111 0 16 chr3 24031934 24032250 -194004908 - AluSx SINE Alu -1 311 1 1958 155 9 79 chr3 24032250 24032590 -194004568 + MLT1B LTR MaLR 83 390 0 362 280 36 52 chr3 24032590 24032707 -194004451 - L1MC4 LINE L1 -75 7967 7853 550 245 82 31 chr3 24033038 24033197 -194003961 + MIR SINE MIR 31 197 -65 513 296 77 0 chr3 24033243 24033412 -194003746 - MLT1J2 LTR MaLR -7 443 262 406 282 165 20 chr3 24033772 24033934 -194003224 + MIR SINE MIR 30 214 -48 253 135 0 0 chr3 24034055 24034092 -194003066 - MER117 DNA MER1_type -107 90 54 1680 170 7 0 chr3 24034113 24034401 -194002757 + AluSx SINE Alu 1 290 -22 2244 102 0 3 chr3 24034410 24034713 -194002445 + AluSq SINE Alu 1 302 -11 2085 174 104 9 chr3 24034820 24035244 -194001914 - MER31B LTR ERV1 -2 464 1 621 268 60 6 chr3 24035819 24036002 -194001156 - MIR3 SINE MIR 0 208 16 231 158 61 0 chr3 24036072 24036154 -194001004 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 249 227 30 30 chr3 24036238 24036304 -194000854 - MIR3 SINE MIR -19 189 124 262 233 44 56 chr3 24036643 24036733 -194000425 + L2 LINE L2 2972 3060 -212 632 274 98 5 chr3 24036864 24037068 -194000090 - MIR SINE MIR -20 242 20 1050 204 37 0 chr3 24037216 24037432 -193999726 + MER58A DNA MER1_type 1 224 0 240 111 0 0 chr3 24038321 24038357 -193998801 + (TG)n Simple_repeat Simple_repeat 1 36 0 2208 111 0 0 chr3 24039483 24039790 -193997368 + AluSx SINE Alu 1 307 -5 318 333 0 0 chr3 24039794 24039896 -193997262 - MIR3 SINE MIR -31 177 76 2324 215 61 20 chr3 24041111 24041655 -193995503 + MER90 LTR ERV1 8 573 -2 940 207 70 44 chr3 24041717 24041944 -193995214 + MIR SINE MIR 2 234 -28 548 302 88 60 chr3 24041952 24042237 -193994921 - L2 LINE L2 -2 3270 2978 189 130 111 37 chr3 24042287 24042341 -193994817 + L2 LINE L2 3238 3295 -18 200 344 41 16 chr3 24042598 24042720 -193994438 + L2 LINE L2 2715 2839 -475 1779 117 4 0 chr3 24042776 24043025 -193994133 - AluSx SINE Alu -62 250 1 1834 263 87 27 chr3 24043930 24044146 -193993012 + MER20B DNA MER1_type 35 237 -546 2394 57 0 3 chr3 24044146 24044442 -193992716 - AluY SINE Alu -16 295 1 1834 263 87 27 chr3 24044442 24044752 -193992406 + MER20B DNA MER1_type 237 616 -167 2298 98 0 0 chr3 24044752 24045049 -193992109 - AluSc SINE Alu -12 297 1 1834 263 87 27 chr3 24045049 24045220 -193991938 + MER20B DNA MER1_type 616 775 -8 326 275 0 0 chr3 24045548 24045628 -193991530 - L1ME LINE L1 -439 5731 5652 1040 218 4 9 chr3 24045921 24046150 -193991008 - L1ME LINE L1 -502 5668 5441 * 1270 221 117 28 chr3 24046143 24046536 -193990622 + L1ME3A LINE L1 5731 6158 -12 1562 137 3 83 chr3 24047889 24048240 -193988918 + MER33 DNA MER1_type 1 323 -1 333 281 52 0 chr3 24048789 24048885 -193988273 + MIR SINE MIR 92 192 -70 731 292 79 39 chr3 24049310 24049804 -193987354 + L2 LINE L2 2714 3221 -92 657 205 0 16 chr3 24049863 24049990 -193987168 + MER58B DNA MER1_type 217 341 0 302 343 28 19 chr3 24049991 24050099 -193987059 + L2 LINE L2 3204 3312 -1 399 217 118 94 chr3 24050429 24050608 -193986550 + MER5A DNA MER1_type 6 189 0 357 241 0 12 chr3 24050750 24050833 -193986325 - MER5B DNA MER1_type -3 175 94 213 39 0 0 chr3 24050838 24050864 -193986294 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1369 196 7 21 chr3 24050870 24051151 -193986007 - AluJb SINE Alu -35 277 1 431 237 0 0 chr3 24051152 24051249 -193985909 - MER5B DNA MER1_type -79 99 3 596 148 0 0 chr3 24051304 24051392 -193985766 + L1PA5 LINE L1 1 88 -6058 33137 58 61 9 chr3 24051392 24056645 -193980513 + L1PA5 LINE L1 617 6154 0 232 256 12 137 chr3 24058609 24058777 -193978381 + MER117 DNA MER1_type 51 197 0 369 211 147 51 chr3 24058931 24059087 -193978071 - LTR16A1 LTR ERVL -45 412 242 180 402 24 0 chr3 24060109 24060191 -193976967 + L3b LINE CR1 1400 1483 -100 521 184 9 9 chr3 24060397 24060506 -193976652 + Charlie5 DNA MER1_type 1 109 -2503 1467 189 68 6 chr3 24060510 24060875 -193976283 + Charlie5 DNA MER1_type 2237 2624 0 297 239 30 0 chr3 24062408 24062475 -193974683 + MIR3 SINE MIR 90 158 -50 207 114 0 0 chr3 24063066 24063101 -193974057 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1841 149 3 20 chr3 24063369 24063670 -193973488 + AluJb SINE Alu 1 296 -16 1254 178 18 9 chr3 24063755 24063980 -193973178 + AluJb SINE Alu 86 312 0 291 156 16 0 chr3 24064007 24064071 -193973087 - MER113 DNA MER1_type? -424 97 33 222 234 0 91 chr3 24066957 24067034 -193970124 - MER5A DNA MER1_type -2 187 118 357 271 16 74 chr3 24067085 24067207 -193969951 - MER5B DNA MER1_type -60 118 4 478 318 7 14 chr3 24067923 24068071 -193969087 - MIR3 SINE MIR -13 195 49 2189 119 6 10 chr3 24068193 24068505 -193968653 + AluSx SINE Alu 1 311 -1 265 227 21 93 chr3 24069464 24069561 -193967597 - MIR SINE MIR -87 175 86 373 297 120 37 chr3 24069640 24070072 -193967086 - L2 LINE L2 -61 3252 2745 193 200 154 31 chr3 24070087 24070152 -193967006 + MIR3 SINE MIR 111 183 -25 1752 119 78 44 chr3 24070920 24071215 -193965943 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr3 24071233 24071257 -193965901 + AT_rich Low_complexity Low_complexity 1 24 0 2447 75 0 10 chr3 24071260 24071566 -193965592 + AluY SINE Alu 1 303 -8 288 276 35 43 chr3 24072032 24072148 -193965010 + MLT1K LTR MaLR 183 297 -291 2060 163 0 0 chr3 24072150 24072457 -193964701 - AluJb SINE Alu -5 307 1 231 194 28 56 chr3 24072626 24072698 -193964460 + MLT1K LTR MaLR 448 517 -71 189 253 147 27 chr3 24072902 24072977 -193964181 - MIR3 SINE MIR -19 189 106 364 212 61 0 chr3 24073357 24073456 -193963702 - Zaphod DNA AcHobo -1 4030 3926 730 150 0 95 chr3 24073456 24073603 -193963555 - FLAM_A SINE Alu 0 142 10 2075 117 91 57 chr3 24073603 24073955 -193963203 + THE1B LTR MaLR 1 364 0 459 176 14 0 chr3 24073955 24074029 -193963129 - FLAM_A SINE Alu -54 78 4 1650 280 66 14 chr3 24074031 24074589 -193962569 - MER115 DNA AcHobo -105 588 2 247 219 62 0 chr3 24074665 24074729 -193962429 + MIR3 SINE MIR 87 154 -54 1082 137 53 0 chr3 24075872 24076062 -193961096 + MSTB1 LTR MaLR 1 200 -232 2166 138 3 0 chr3 24076063 24076360 -193960798 + AluSp SINE Alu 1 298 -15 451 268 18 37 chr3 24076592 24076756 -193960402 - MLT1H LTR MaLR 0 549 389 560 238 45 21 chr3 24076875 24077033 -193960125 - MIR SINE MIR -58 150 36 2238 109 0 3 chr3 24077144 24077446 -193959712 - AluSg SINE Alu -9 301 1 2568 74 0 0 chr3 24078694 24079005 -193958153 + AluY SINE Alu 1 311 0 193 308 70 89 chr3 24079480 24079694 -193957464 + L2 LINE L2 256 465 -2849 2316 84 0 3 chr3 24080009 24080340 -193956818 + AluSx SINE Alu 1 330 0 228 221 91 39 chr3 24080584 24080661 -193956497 - MIR3 SINE MIR -49 159 79 349 306 149 53 chr3 24082066 24082422 -193954736 - L2 LINE L2 0 3313 2924 312 146 18 0 chr3 24082404 24082459 -193954699 - MER5B DNA MER1_type -5 173 118 * 563 30 0 0 chr3 24082459 24082547 -193954611 + L1PA3 LINE L1 6072 6159 0 2271 123 0 0 chr3 24082560 24082860 -193954298 + AluSx SINE Alu 1 300 -12 31 0 0 0 chr3 24082881 24082912 -193954246 + AT_rich Low_complexity Low_complexity 1 31 0 294 289 0 60 chr3 24082919 24083002 -193954156 - MER5B DNA MER1_type -57 121 44 2377 101 0 0 chr3 24083195 24083492 -193953666 + AluSx SINE Alu 1 297 -15 446 237 80 90 chr3 24083548 24083812 -193953346 - MLT1L LTR MaLR -13 602 233 2172 109 0 20 chr3 24084422 24084715 -193952443 + AluSg SINE Alu 1 287 -23 521 231 16 86 chr3 24084781 24084967 -193952191 - L1MC5 LINE L1 -36 7925 7753 2348 107 0 3 chr3 24085215 24085525 -193951633 + AluSx SINE Alu 1 309 -3 194 33 67 0 chr3 24086955 24086985 -193950173 + T-rich Low_complexity Low_complexity 2 33 0 263 240 194 16 chr3 24087119 24087248 -193949910 + MIR SINE MIR 93 244 -18 2107 131 0 32 chr3 24087373 24087687 -193949471 + AluJo SINE Alu 1 304 -8 184 310 0 35 chr3 24088085 24088143 -193949015 - MIR SINE MIR -78 184 129 188 135 27 0 chr3 24088523 24088560 -193948598 + CT-rich Low_complexity Low_complexity 2 39 0 235 247 93 52 chr3 24088572 24088669 -193948489 - L2 LINE L2 -1 3271 3171 587 188 88 59 chr3 24089885 24089972 -193947186 - MER3 DNA MER1_type 0 209 126 2237 117 0 0 chr3 24089972 24090270 -193946888 + AluSx SINE Alu 1 298 -14 587 188 88 59 chr3 24090270 24090352 -193946806 - MER3 DNA MER1_type -83 126 35 247 219 62 0 chr3 24092332 24092396 -193944762 - MIR3 SINE MIR -54 154 87 1650 280 66 14 chr3 24092472 24093030 -193944128 + MER115 DNA AcHobo 2 588 -105 459 176 14 0 chr3 24093032 24093106 -193944052 + FLAM_A SINE Alu 4 78 -54 2075 117 91 57 chr3 24093106 24093458 -193943700 - THE1B LTR MaLR 0 364 1 724 149 0 101 chr3 24093458 24093606 -193943552 + FLAM_A SINE Alu 10 142 0 364 212 61 0 chr3 24093606 24093705 -193943453 + Zaphod DNA AcHobo 3926 4030 -1 189 253 147 27 chr3 24094085 24094160 -193942998 + MIR3 SINE MIR 106 189 -19 231 194 28 56 chr3 24094364 24094436 -193942722 - MLT1K LTR MaLR -71 517 448 1869 192 0 0 chr3 24094605 24094917 -193942241 + AluJb SINE Alu 1 312 0 259 236 34 56 chr3 24094941 24095030 -193942128 - MLT1K LTR MaLR -319 269 183 2301 104 10 13 chr3 24095496 24095670 -193941488 - AluSx SINE Alu -5 307 133 2588 69 0 0 chr3 24095670 24095974 -193941184 - AluY SINE Alu -7 304 1 2301 104 10 13 chr3 24095974 24096107 -193941051 - AluSx SINE Alu -179 133 1 678 193 0 0 chr3 24096123 24096242 -193940916 - AluJo SINE Alu -176 136 18 527 247 44 25 chr3 24096324 24096482 -193940676 + MIR SINE MIR 20 180 -82 2282 112 7 3 chr3 24096505 24096809 -193940349 + AluSx SINE Alu 1 305 -7 252 282 0 0 chr3 24096915 24096986 -193940172 - MER90 LTR ERV1 -259 355 285 * 581 130 47 101 chr3 24096966 24097001 -193940157 - LTR65 LTR ERV1 -508 161 126 2115 121 17 7 chr3 24097001 24097298 -193939860 + AluSx SINE Alu 1 300 -12 581 130 47 101 chr3 24097298 24097431 -193939727 - LTR65 LTR ERV1 -543 126 2 692 231 114 9 chr3 24098051 24098297 -193938861 + MLT1H1 LTR MaLR 290 590 0 196 244 0 0 chr3 24098464 24098505 -193938653 - MIR3 SINE MIR -17 191 151 1044 228 169 34 chr3 24098544 24099017 -193938141 + MLT1H LTR MaLR 9 545 -4 258 32 0 0 chr3 24100100 24100131 -193937027 + (CA)n Simple_repeat Simple_repeat 1 31 0 975 123 0 0 chr3 24100655 24100785 -193936373 - FLAM_C SINE Alu -3 130 1 198 0 0 0 chr3 24100828 24100850 -193936308 + (A)n Simple_repeat Simple_repeat 1 22 0 195 329 47 0 chr3 24102553 24102638 -193934520 + MIR3 SINE MIR 115 203 -5 2191 136 7 0 chr3 24103517 24103825 -193933333 + AluSx SINE Alu 3 312 0 244 188 29 72 chr3 24104206 24104275 -193932883 + Charlie1 DNA MER1_type 7 72 -2689 958 142 0 45 chr3 24104350 24104526 -193932632 + MER20 DNA MER1_type 45 212 -7 1236 202 18 119 chr3 24104755 24105091 -193932067 + AluJo SINE Alu 1 302 0 2197 125 0 0 chr3 24105147 24105435 -193931723 + AluSx SINE Alu 4 291 -21 393 324 139 17 chr3 24106370 24106543 -193930615 + MIR3 SINE MIR 4 197 -11 679 226 53 0 chr3 24107268 24107401 -193929757 - FAM SINE Alu -45 140 1 263 278 144 0 chr3 24108144 24108241 -193928917 - L2 LINE L2 -4 3268 3158 462 238 48 0 chr3 24108306 24108411 -193928747 - Tigger3(Golem) DNA MER2_type 0 3029 2920 378 235 0 0 chr3 24108525 24108593 -193928565 - Tigger3(Golem) DNA MER2_type -2949 80 13 207 0 0 0 chr3 24109083 24109106 -193928052 + (T)n Simple_repeat Simple_repeat 1 23 0 827 93 0 0 chr3 24109123 24109230 -193927928 + U6 snRNA snRNA 1 107 0 264 291 94 0 chr3 24109240 24109357 -193927801 + MIR SINE MIR 135 262 0 455 91 0 65 chr3 24109471 24109548 -193927610 + AluJ/FRAM SINE Alu 224 295 -17 293 291 81 40 chr3 24110691 24110914 -193926244 + L2 LINE L2 2707 2938 -376 332 342 9 0 chr3 24111074 24111188 -193925970 + L2 LINE L2 3191 3305 -8 435 211 27 23 chr3 24111254 24111378 -193925780 - MIR3 SINE MIR -15 193 67 1746 165 0 4 chr3 24111863 24112142 -193925016 - AluJb SINE Alu -13 299 22 591 184 13 53 chr3 24112572 24112724 -193924434 - L1MC5 LINE L1 -48 7913 7768 807 142 8 15 chr3 24112987 24113121 -193924037 - FLAM_C SINE Alu 0 133 1 2374 87 0 0 chr3 24116105 24116394 -193920764 + AluSc SINE Alu 5 293 -16 297 212 93 85 chr3 24116623 24116741 -193920417 + FLAM_A SINE Alu 1 119 -14 33 43 0 0 chr3 24116741 24116788 -193920370 + AT_rich Low_complexity Low_complexity 1 47 0 456 285 93 23 chr3 24116843 24117057 -193920101 - MIR SINE MIR -28 234 6 232 266 42 35 chr3 24117622 24117765 -193919393 - L1MC4 LINE L1 -134 7908 7765 1721 185 7 0 chr3 24117773 24118070 -193919088 + AluJb SINE Alu 1 299 -13 1459 180 114 0 chr3 24118144 24118416 -193918742 - AluJb SINE Alu -9 303 1 1738 159 52 7 chr3 24118438 24118609 -193918549 - AluJb SINE Alu -9 303 112 186 43 0 0 chr3 24118609 24118632 -193918526 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1738 159 52 7 chr3 24118632 24118750 -193918408 - AluJb SINE Alu -200 112 1 747 138 17 0 chr3 24118750 24118866 -193918292 - AluJo SINE Alu -171 141 24 2343 101 10 0 chr3 24118921 24119227 -193917931 - AluSx SINE Alu -3 309 1 726 227 146 24 chr3 24119412 24119659 -193917499 - L1MC4 LINE L1 -550 7492 7216 33 56 0 0 chr3 24119663 24119717 -193917441 + AT_rich Low_complexity Low_complexity 1 54 0 1688 163 18 7 chr3 24119717 24119994 -193917164 - AluJo SINE Alu -32 280 1 1811 152 4 4 chr3 24119996 24120272 -193916886 - AluJb SINE Alu -11 301 26 375 172 0 0 chr3 24120273 24120331 -193916827 - AluJ/FLAM SINE Alu -244 58 1 1033 154 56 70 chr3 24120359 24120407 -193916751 + AluJo SINE Alu 84 131 -181 2314 83 20 13 chr3 24120407 24120707 -193916451 - AluSq SINE Alu -11 302 1 1033 154 56 70 chr3 24120707 24120872 -193916286 + AluJo SINE Alu 131 294 -18 433 288 68 37 chr3 24121076 24121375 -193915783 + MER109 Unknown Unknown 2 803 -1629 2350 191 38 23 chr3 24121382 24122034 -193915124 + MER109 Unknown Unknown 1 1324 -1108 735 295 72 52 chr3 24122064 24122186 -193914972 - L1MC4a LINE L1 -1923 5885 5767 2483 77 3 0 chr3 24122186 24122485 -193914673 + AluY SINE Alu 6 305 -6 735 295 72 52 chr3 24122485 24122847 -193914311 - L1MC4a LINE L1 -2041 5767 5391 443 241 18 9 chr3 24122885 24122997 -193914161 - L2 LINE L2 -1 3312 3200 1037 164 49 53 chr3 24123145 24123371 -193913787 - AluJo SINE Alu -1 311 87 851 121 32 0 chr3 24123467 24123591 -193913567 - FLAM_C SINE Alu -4 129 2 1406 253 63 36 chr3 24123678 24124538 -193912620 - L1MCb LINE L1 -4851 1194 597 324 298 79 0 chr3 24124732 24124846 -193912312 - L1MC4a LINE L1 -1328 4818 4696 2159 104 14 0 chr3 24124854 24125167 -193911991 - AluSg SINE Alu 0 317 1 726 217 56 7 chr3 24125169 24125312 -193911846 - FRAM SINE Alu -12 154 5 354 223 70 56 chr3 24125319 24125534 -193911624 - L1MC4a LINE L1 -1440 4706 4489 606 269 21 27 chr3 24125593 24125779 -193911379 - MER90 LTR ERV1 -7 568 384 1732 181 0 23 chr3 24125787 24126091 -193911067 + AluJo SINE Alu 1 297 -15 751 174 16 0 chr3 24126886 24127007 -193910151 + FLAM_C SINE Alu 2 124 -19 215 347 48 20 chr3 24127012 24127159 -193909999 + MIR SINE MIR 82 232 -30 210 37 0 0 chr3 24127275 24127302 -193909856 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1308 170 9 5 chr3 24127407 24127625 -193909533 - AluJo SINE Alu -17 295 77 2287 101 10 0 chr3 24127689 24127987 -193909171 + AluSx SINE Alu 1 301 -11 1792 169 14 3 chr3 24128754 24129049 -193908109 - AluJb SINE Alu -14 298 1 1843 165 35 0 chr3 24129094 24129379 -193907779 - AluSx SINE Alu -17 295 1 1429 165 12 35 chr3 24129589 24129867 -193907291 + AluJb SINE Alu 38 309 0 1899 155 7 7 chr3 24130277 24130568 -193906590 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr3 24130568 24130592 -193906566 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 24130796 24130817 -193906341 + AT_rich Low_complexity Low_complexity 1 21 0 2224 112 0 7 chr3 24131149 24131445 -193905713 + AluSx SINE Alu 3 296 -16 976 134 18 43 chr3 24131466 24131630 -193905528 - AluJb SINE Alu -24 288 129 634 166 58 37 chr3 24131645 24131744 -193905414 + MER44D DNA MER2_type 1 96 -2391 1773 153 44 0 chr3 24131744 24132018 -193905140 + AluJb SINE Alu 14 299 -13 634 166 58 37 chr3 24132018 24132159 -193904999 + MER44D DNA MER2_type 96 604 -1 312 246 89 73 chr3 24132742 24132921 -193904237 - MIR3 SINE MIR -6 202 21 1120 164 4 58 chr3 24133552 24133778 -193903380 + AluJo SINE Alu 89 302 -10 261 264 100 0 chr3 24133837 24133947 -193903211 + MIR SINE MIR 84 204 -58 787 211 88 44 chr3 24133980 24134207 -193902951 - L1ME3A LINE L1 -6 6164 5928 1899 141 23 33 chr3 24135021 24135325 -193901833 + AluSx SINE Alu 1 301 -11 1653 151 70 4 chr3 24135412 24135671 -193901487 + AluSx SINE Alu 2 277 -35 351 0 0 0 chr3 24135672 24135711 -193901447 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 396 0 0 0 chr3 24135710 24135754 -193901404 + (TA)n Simple_repeat Simple_repeat 1 44 0 25 51 0 0 chr3 24136199 24136238 -193900920 + AT_rich Low_complexity Low_complexity 1 39 0 244 293 0 13 chr3 24136273 24136348 -193900810 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 240 294 34 34 chr3 24136429 24136548 -193900610 + MIR SINE MIR 96 214 -48 1070 148 6 28 chr3 24137500 24137676 -193899482 + FAM SINE Alu 4 175 0 2084 125 0 26 chr3 24137690 24138001 -193899157 + AluSq SINE Alu 1 303 -10 3713 113 30 0 chr3 24138143 24138681 -193898477 + MER41A LTR ERV1 1 554 0 714 200 56 25 chr3 24139066 24139226 -193897932 + AluJo SINE Alu 2 166 -146 2098 212 70 60 chr3 24139226 24139575 -193897583 + LTR8 LTR ERV1 1 362 -329 2275 118 0 6 chr3 24139575 24139889 -193897269 - AluSx SINE Alu 0 312 1 2098 212 70 60 chr3 24139889 24140208 -193896950 + LTR8 LTR ERV1 362 676 -15 249 205 0 0 chr3 24140237 24140273 -193896885 + LTR8 LTR ERV1 646 681 -10 3012 146 26 10 chr3 24140273 24140768 -193896390 - MER41B LTR ERV1 0 635 133 261 83 0 0 chr3 24140768 24140804 -193896354 + (T)n Simple_repeat Simple_repeat 1 36 0 1524 171 0 19 chr3 24140867 24141002 -193896156 + AluJb SINE Alu 1 130 -182 2629 65 0 0 chr3 24141002 24141310 -193895848 + AluY SINE Alu 1 308 -3 1524 171 0 19 chr3 24141310 24141432 -193895726 + AluJb SINE Alu 130 253 -59 316 246 52 78 chr3 24141438 24141670 -193895488 + L1ME4a LINE L1 5893 6118 -3 1032 191 72 139 chr3 24141841 24142547 -193894611 - LTR49 LTR ERV1 0 595 1 269 305 33 26 chr3 24142553 24142704 -193894454 - HAL1 LINE L1 -1082 1425 1274 333 0 0 0 chr3 24142759 24142796 -193894362 + (CA)n Simple_repeat Simple_repeat 2 38 0 335 206 0 15 chr3 24142816 24142884 -193894274 - AluJb SINE Alu -1 301 235 3974 105 26 51 chr3 24142884 24143530 -193893628 - MER41B LTR ERV1 0 635 6 1492 176 0 8 chr3 24143530 24143775 -193893383 - AluJb SINE Alu -69 243 1 3670 150 25 27 chr3 24143787 24143847 -193893311 - LTR8A LTR ERV1 0 727 668 2255 115 0 0 chr3 24143847 24144143 -193893015 + AluSx SINE Alu 1 296 -16 3670 150 25 27 chr3 24144143 24144726 -193892432 - LTR8A LTR ERV1 -59 668 60 44235 45 5 1 chr3 24144726 24150833 -193886325 + L1PA4 LINE L1 20 6151 -4 290 226 0 0 chr3 24150938 24150991 -193886167 - LTR8A LTR ERV1 -635 92 40 897 249 59 135 chr3 24150997 24151856 -193885302 + LTR1B LTR ERV1 33 826 0 244 77 103 0 chr3 24151856 24151892 -193885266 - LTR8A LTR ERV1 -687 40 1 2195 122 0 0 chr3 24151904 24152191 -193884967 - AluSx SINE Alu -21 291 5 232 204 0 0 chr3 24152309 24152353 -193884805 - Alu SINE Alu -3 298 255 641 149 26 26 chr3 24152377 24152491 -193884667 + FRAM SINE Alu 54 167 -9 2419 74 7 13 chr3 24152493 24152803 -193884355 + AluSp SINE Alu 1 308 -5 633 234 42 24 chr3 24152912 24153079 -193884079 + LTR29 LTR ERV1 137 306 -316 479 160 66 28 chr3 24153079 24153185 -193883973 + FLAM_C SINE Alu 33 142 -1 1850 155 14 17 chr3 24153185 24153374 -193883784 + AluJo SINE Alu 1 190 -122 4747 98 4 51 chr3 24153374 24153931 -193883227 + LTR8 LTR ERV1 1 519 -172 2208 106 0 0 chr3 24153931 24154252 -193882906 + AluSq SINE Alu 1 321 0 4747 98 4 51 chr3 24154252 24154418 -193882740 + LTR8 LTR ERV1 519 691 0 1850 155 14 17 chr3 24154418 24154525 -193882633 + AluJo SINE Alu 190 296 -16 1151 213 44 24 chr3 24154530 24154826 -193882332 + LTR48B LTR ERV1 342 643 -1 1732 95 50 0 chr3 24154826 24155064 -193882094 + MER41B LTR ERV1 1 250 -385 3753 162 63 38 chr3 24155064 24155246 -193881912 + MER50 LTR ERV1 1 177 -557 2103 124 7 20 chr3 24155246 24155552 -193881606 + AluSq SINE Alu 3 304 -9 3753 162 63 38 chr3 24155552 24156062 -193881096 + MER50 LTR ERV1 177 711 -23 2398 143 16 3 chr3 24156063 24156447 -193880711 + MER41B LTR ERV1 247 635 0 799 136 7 43 chr3 24156479 24156619 -193880539 - LTR23 LTR ERV1 -5 432 298 433 151 0 23 chr3 24156620 24156706 -193880452 - FLAM_A SINE Alu -1 141 58 2259 120 0 0 chr3 24156717 24157026 -193880132 - AluSx SINE Alu -3 309 1 661 76 227 8 chr3 24157027 24157146 -193880012 - LTR23 LTR ERV1 -132 305 161 700 169 25 81 chr3 24157219 24157379 -193879779 - LTR23 LTR ERV1 -286 151 1 574 179 0 52 chr3 24157468 24157602 -193879556 + MER106B DNA MER1_type 8 134 -925 1718 152 8 0 chr3 24157622 24157879 -193879279 - AluJo SINE Alu -49 263 5 1572 225 160 43 chr3 24157904 24158623 -193878535 - HAL1 LINE L1 -1559 948 146 723 96 70 45 chr3 24158637 24158793 -193878365 - L1MA7 LINE L1 -4 6287 6128 853 126 0 70 chr3 24158794 24158937 -193878221 + AluJo SINE Alu 1 133 -169 538 175 10 0 chr3 24158999 24159102 -193878056 - LTR49 LTR ERV1 0 595 492 1838 139 14 3 chr3 24159253 24159541 -193877617 - L1MA7 LINE L1 -186 6105 5815 312 276 46 11 chr3 24159571 24159658 -193877500 - HAL1 LINE L1 -2400 107 18 1749 164 31 0 chr3 24159658 24159951 -193877207 - AluJb SINE Alu -10 302 1 883 193 6 12 chr3 24160128 24160294 -193876864 + AluJo SINE Alu 137 301 -1 346 276 25 31 chr3 24160406 24160569 -193876589 + L1ME4a LINE L1 5584 5745 -376 424 214 165 71 chr3 24160570 24160591 -193876567 + MER58A DNA MER1_type 1 19 -2401 2532 200 26 24 chr3 24160591 24161131 -193876027 + MER87 LTR ERV1 1 541 0 424 214 165 71 chr3 24161131 24161291 -193875867 + MER58A DNA MER1_type 19 199 -25 927 89 0 22 chr3 24161308 24161443 -193875715 - FLAM_C SINE Alu 0 133 2 415 309 83 20 chr3 24161475 24161679 -193875479 + L1ME4a LINE L1 5737 5953 -168 2046 107 13 10 chr3 24161706 24162006 -193875152 - AluSx SINE Alu -11 301 1 1419 183 67 14 chr3 24162024 24162231 -193874927 - AluJo SINE Alu -12 300 72 1989 120 51 0 chr3 24162231 24162523 -193874635 + AluSx SINE Alu 1 307 -5 1419 183 67 14 chr3 24162523 24162600 -193874558 - AluJo SINE Alu -240 72 1 268 306 59 12 chr3 24163036 24163121 -193874037 - MER91A DNA MER1_type -2 194 106 334 325 42 8 chr3 24163150 24163270 -193873888 - MER91A DNA MER1_type -72 124 1 449 188 124 16 chr3 24163871 24164030 -193873128 + MER41B LTR ERV1 97 340 -295 933 206 47 12 chr3 24165167 24165424 -193871734 + L1ME1 LINE L1 5846 6111 -55 2211 118 7 0 chr3 24165475 24165772 -193871386 + AluSx SINE Alu 1 299 -13 329 91 0 0 chr3 24165773 24165817 -193871341 + Alu SINE Alu 1 44 -256 1217 194 18 122 chr3 24165939 24166268 -193870890 - AluJb SINE Alu -7 295 1 24 0 0 0 chr3 24166273 24166297 -193870861 + AT_rich Low_complexity Low_complexity 1 24 0 1009 118 7 0 chr3 24166300 24166436 -193870722 + AluSq/x SINE Alu 1 137 -176 2026 123 30 7 chr3 24166437 24166739 -193870419 + AluSx SINE Alu 4 312 0 1797 137 23 42 chr3 24166825 24167131 -193870027 + AluJb SINE Alu 1 300 -12 1745 156 25 0 chr3 24167390 24167672 -193869486 - AluSx SINE Alu -23 289 1 1028 171 0 12 chr3 24168002 24168172 -193868986 + FRAM SINE Alu 1 160 -16 189 0 0 0 chr3 24168883 24168904 -193868254 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2264 76 0 0 chr3 24169096 24169399 -193867759 - L1P LINE L1 -5843 303 1 248 250 0 0 chr3 24169798 24169850 -193867308 - L2 LINE L2 0 3272 3221 568 287 97 43 chr3 24170476 24170891 -193866267 + L1M4 LINE L1 3928 4319 -1827 1861 154 3 3 chr3 24170891 24171176 -193865982 + AluSx SINE Alu 24 308 -4 568 287 97 43 chr3 24171176 24171651 -193865507 + L1M4 LINE L1 4319 4866 -1280 1184 76 0 0 chr3 24171663 24171808 -193865350 + AluSq SINE Alu 30 174 -139 22 70 0 0 chr3 24172041 24172084 -193865074 + AT_rich Low_complexity Low_complexity 1 43 0 483 329 111 8 chr3 24172120 24172354 -193864804 - MIR SINE MIR 0 262 5 2059 180 43 35 chr3 24172355 24172815 -193864343 + MLT2C2 LTR ERVL 1 464 0 247 344 38 32 chr3 24172842 24172999 -193864159 - MIR SINE MIR -57 205 48 1491 128 0 0 chr3 24173133 24173337 -193863821 + AluSq SINE Alu 1 204 -109 9403 50 1 1 chr3 24174883 24176133 -193861025 + L1P LINE L1 1715 2964 -3182 1091 46 0 0 chr3 24176234 24176365 -193860793 + AluSc SINE Alu 142 272 -37 450 304 88 44 chr3 24176782 24176962 -193860196 - MARNA DNA Mariner -119 467 296 2224 99 3 0 chr3 24176962 24177277 -193859881 + AluSp SINE Alu 1 313 0 450 304 88 44 chr3 24177277 24177481 -193859677 - MARNA DNA Mariner -290 296 66 535 282 67 5 chr3 24178462 24178657 -193858501 - MIR SINE MIR -4 258 52 276 197 118 0 chr3 24178829 24178905 -193858253 + L1ME3 LINE L1 5890 5974 -188 2064 142 19 30 chr3 24178928 24179295 -193857863 + MLT1A1 LTR MaLR 1 363 -2 485 180 9 9 chr3 24179296 24179407 -193857751 + MLT1A1-int LTR MaLR 3 113 -1622 26 0 0 0 chr3 24179418 24179444 -193857714 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr3 24179711 24179737 -193857421 + AT_rich Low_complexity Low_complexity 1 26 0 230 333 107 20 chr3 24180550 24180700 -193856458 - MIR SINE MIR -70 192 30 22 0 0 0 chr3 24180752 24180774 -193856384 + AT_rich Low_complexity Low_complexity 1 22 0 2071 135 10 6 chr3 24181319 24181630 -193855528 + AluSx SINE Alu 1 312 0 6654 45 6 0 chr3 24181695 24182540 -193854618 - L1PA5 LINE L1 -2 6152 5303 792 229 0 6 chr3 24185634 24185791 -193851367 - FRAM SINE Alu -13 163 8 1215 173 17 4 chr3 24187025 24187256 -193849902 + L1MB8 LINE L1 5789 6022 -156 2229 99 0 32 chr3 24187282 24187595 -193849563 - AluSx SINE Alu -9 303 1 604 174 97 107 chr3 24188013 24188209 -193848949 - MER20 DNA MER1_type -3 216 23 359 231 135 14 chr3 24188231 24188382 -193848776 + L1ME3 LINE L1 5660 5829 -333 390 169 34 11 chr3 24189476 24189565 -193847593 + MER103 DNA DNA 2 92 -74 212 171 0 0 chr3 24190129 24190170 -193846988 + A-rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 24190640 24190670 -193846488 + AT_rich Low_complexity Low_complexity 1 30 0 608 264 26 31 chr3 24191210 24191403 -193845755 + MIR SINE MIR 24 215 -47 2231 104 24 0 chr3 24191584 24191882 -193845276 - AluSx SINE Alu -5 307 3 1690 182 26 10 chr3 24191884 24192186 -193844972 - AluJo SINE Alu -5 307 1 756 247 0 0 chr3 24192418 24192564 -193844594 + FRAM SINE Alu 1 146 -30 445 215 123 8 chr3 24192603 24192733 -193844425 - MIR SINE MIR -55 207 63 207 0 0 0 chr3 24192734 24192757 -193844401 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 653 200 8 17 chr3 24192759 24192879 -193844279 - FLAM_A SINE Alu -13 120 2 180 133 0 0 chr3 24193769 24193799 -193843359 - MIR3 SINE MIR -19 189 160 23 54 0 0 chr3 24195064 24195101 -193842057 + AT_rich Low_complexity Low_complexity 1 37 0 1638 151 59 11 chr3 24195187 24195459 -193841699 - AluJo SINE Alu -27 285 1 1640 180 28 3 chr3 24195477 24195761 -193841397 - AluJb SINE Alu -16 296 6 891 199 80 74 chr3 24196109 24196461 -193840697 - L1ME2 LINE L1 -19 6145 5792 1989 146 3 3 chr3 24197346 24197647 -193839511 - AluSx SINE Alu -11 301 1 1090 261 87 34 chr3 24197718 24198214 -193838944 + MER77 LTR ERV1 54 599 -6 662 211 99 0 chr3 24198371 24198532 -193838626 + MLT1C LTR MaLR 287 463 -4 1593 165 91 0 chr3 24199113 24199398 -193837760 + AluJo SINE Alu 1 311 -1 1939 176 0 7 chr3 24200303 24200605 -193836553 + AluJb SINE Alu 5 304 -8 841 210 258 0 chr3 24200663 24200934 -193836224 - MER2 DNA MER2_type -2 342 2 12422 130 63 47 chr3 24201068 24201367 -193835791 + Tigger1 DNA MER2_type 3 296 -2122 1979 147 3 0 chr3 24201367 24201652 -193835506 + AluSx SINE Alu 4 289 -23 12422 130 63 47 chr3 24201652 24202897 -193834261 + Tigger1 DNA MER2_type 296 1519 -899 2294 83 36 0 chr3 24202897 24203199 -193833959 + AluSq SINE Alu 1 313 0 12422 130 63 47 chr3 24203199 24203903 -193833255 + Tigger1 DNA MER2_type 1519 2296 -122 1664 193 4 4 chr3 24203903 24204183 -193832975 - AluJo SINE Alu -24 288 9 12422 130 63 47 chr3 24204183 24204308 -193832850 + Tigger1 DNA MER2_type 2296 2417 -1 664 246 116 43 chr3 24204442 24204788 -193832370 - MLT1I LTR MaLR 0 409 39 181 307 117 58 chr3 24204857 24204994 -193832164 + L2 LINE L2 2910 3054 -218 1350 146 154 20 chr3 24205499 24205752 -193831406 - AluJb SINE Alu -15 287 1 964 188 167 61 chr3 24206389 24206718 -193830440 + MLT1A1 LTR MaLR 1 364 -1 1921 72 8 0 chr3 24207235 24207472 -193829686 + AluSq SINE Alu 72 310 -3 2165 109 7 7 chr3 24208479 24208782 -193828376 + AluSx SINE Alu 1 303 -9 1254 209 4 4 chr3 24209600 24209835 -193827323 - MER8 DNA MER2_type 0 239 5 1486 150 124 23 chr3 24211682 24211989 -193825169 + MER44D DNA MER2_type 1 608 -1 1697 173 25 3 chr3 24213209 24213492 -193823666 - AluJo SINE Alu -11 301 13 6628 103 51 24 chr3 24213896 24214252 -193822906 - MER11C LTR ERVK 0 1071 726 2143 21 0 0 chr3 24214252 24214487 -193822671 + 7SLRNA srpRNA srpRNA 1 235 -85 6628 103 51 24 chr3 24214487 24215173 -193821985 - MER11C LTR ERVK -345 726 1 2036 190 125 4 chr3 24215634 24216123 -193821035 + L1ME2 LINE L1 5615 6162 -2 26 0 0 0 chr3 24216286 24216312 -193820846 + AT_rich Low_complexity Low_complexity 1 26 0 2433 78 3 0 chr3 24216652 24216958 -193820200 + AluY SINE Alu 1 307 -4 288 0 0 0 chr3 24217431 24217463 -193819695 + (T)n Simple_repeat Simple_repeat 1 32 0 5082 97 23 55 chr3 24217528 24218326 -193818832 + SVA Other Other 95 866 -520 1314 111 16 115 chr3 24218337 24218824 -193818334 + SVA Other Other 430 868 -518 6303 71 26 52 chr3 24218868 24219857 -193817301 + SVA Other Other 433 1396 0 199 256 23 58 chr3 24219864 24219950 -193817208 + L3 LINE CR1 689 771 -806 465 19 0 0 chr3 24220020 24220074 -193817084 + (CA)n Simple_repeat Simple_repeat 2 55 0 208 288 17 0 chr3 24220228 24220287 -193816871 + L3 LINE CR1 1158 1217 -360 563 231 77 0 chr3 24220287 24220430 -193816728 + MER105 DNA DNA 1 154 -50 1942 137 13 22 chr3 24220778 24221091 -193816067 - AluSq SINE Alu -3 310 1 14858 176 24 6 chr3 24221092 24224875 -193812283 - L1P5 LINE L1 -367 6500 2598 2048 116 20 3 chr3 24274965 24275259 -193761899 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 24275736 24275767 -193761391 + AT_rich Low_complexity Low_complexity 1 31 0 394 298 32 8 chr3 24276406 24276530 -193760628 + L2 LINE L2 2504 2630 -684 2178 103 17 7 chr3 24276586 24276888 -193760270 + AluSc SINE Alu 4 308 -1 479 278 86 5 chr3 24276905 24277092 -193760066 + L2 LINE L2 3060 3261 -52 24 53 0 0 chr3 24277366 24277404 -193759754 + AT_rich Low_complexity Low_complexity 1 38 0 879 186 77 41 chr3 24277507 24277728 -193759430 + AluJo SINE Alu 83 311 -1 503 230 165 99 chr3 24278396 24278603 -193758555 + MLT1J LTR MaLR 1 193 -318 1868 92 0 88 chr3 24278603 24278909 -193758249 + AluY SINE Alu 1 279 -32 247 24 24 24 chr3 24278911 24278952 -193758206 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 503 230 165 99 chr3 24278952 24279154 -193758004 + MLT1J LTR MaLR 193 440 -71 1441 145 16 36 chr3 24279425 24279674 -193757484 + AluJo SINE Alu 38 281 -31 200 213 33 49 chr3 24281235 24281296 -193755862 - MER5A DNA MER1_type -129 60 1 228 67 0 0 chr3 24281423 24281453 -193755705 + (TA)n Simple_repeat Simple_repeat 2 31 0 1441 202 84 81 chr3 24282019 24282037 -193755121 + L1M4 LINE L1 2669 2685 -3461 2304 165 7 30 chr3 24282037 24282151 -193755007 - MSTB LTR MaLR 0 426 311 2279 87 0 0 chr3 24282151 24282449 -193754709 + AluSx SINE Alu 1 298 -14 2304 165 7 30 chr3 24282449 24282770 -193754388 - MSTB LTR MaLR -115 311 1 1441 202 84 81 chr3 24282770 24283346 -193753812 + L1M4 LINE L1 2685 3265 -2881 915 238 92 27 chr3 24283399 24283693 -193753465 + L1M4 LINE L1 3638 3950 -2196 24 0 0 0 chr3 24283693 24283717 -193753441 + AT_rich Low_complexity Low_complexity 1 24 0 1178 102 0 0 chr3 24283719 24283876 -193753282 - AluSg/x SINE Alu -21 289 133 3822 229 96 26 chr3 24283889 24284366 -193752792 + L1M4 LINE L1 3952 4394 -1752 2001 134 28 0 chr3 24284366 24284657 -193752501 + AluSx SINE Alu 1 299 -13 3822 229 96 26 chr3 24284657 24285465 -193751693 + L1M4 LINE L1 4394 5328 -818 584 293 57 47 chr3 24285468 24285892 -193751266 + L1ME3A LINE L1 4909 5336 -810 2182 107 0 0 chr3 24285909 24286200 -193750958 - AluSx SINE Alu -21 291 1 3811 209 35 22 chr3 24286333 24287162 -193749996 - MER21B LTR ERV1 -20 843 4 526 270 194 12 chr3 24287197 24287449 -193749709 + L1ME3A LINE L1 5503 5800 -370 259 226 108 0 chr3 24287465 24287558 -193749600 + L1ME3A LINE L1 5860 5962 -208 323 200 208 54 chr3 24287676 24287806 -193749352 + L1ME3A LINE L1 6020 6169 -1 2228 110 10 0 chr3 24288017 24288325 -193748833 + AluY SINE Alu 1 311 0 486 0 0 0 chr3 24288873 24288927 -193748231 + (CA)n Simple_repeat Simple_repeat 2 55 0 1291 243 56 63 chr3 24289301 24289746 -193747412 - MLT1E3 LTR MaLR -43 581 140 1748 126 78 28 chr3 24289788 24290145 -193747013 + THE1C LTR MaLR 1 375 0 313 209 12 47 chr3 24290632 24290718 -193746440 + MIR3 SINE MIR 116 198 -10 6084 166 23 8 chr3 24290960 24292134 -193745024 + L1 LINE L1 3998 5188 -958 416 186 98 0 chr3 24292141 24292243 -193744915 + L1 LINE L1 5224 5335 -811 907 193 128 0 chr3 24292243 24292430 -193744728 + MLT2B3 LTR ERVL 1 211 -343 715 119 30 22 chr3 24292431 24292565 -193744593 + L1MA7 LINE L1 6155 6289 -2 411 278 83 19 chr3 24292815 24293002 -193744156 + L1ME1 LINE L1 496 699 -5908 644 188 124 60 chr3 24293002 24293220 -193743938 - MER106A DNA MER1_type 0 236 5 411 278 83 19 chr3 24293220 24293237 -193743921 + L1ME1 LINE L1 699 713 -5894 386 211 22 22 chr3 24293242 24293332 -193743826 + L1ME1 LINE L1 746 835 -5772 246 200 146 0 chr3 24293346 24293456 -193743702 + L1ME1 LINE L1 4642 4767 -1659 1834 217 30 30 chr3 24293526 24293986 -193743172 + MER101 LTR ERV1 11 470 -4 2029 213 122 21 chr3 24293988 24294780 -193742378 + L1ME1 LINE L1 5289 6163 -283 * 3769 158 216 12 chr3 24294771 24295840 -193741318 + L1MC1 LINE L1 1284 2569 -3857 1453 118 0 108 chr3 24295821 24296108 -193741050 + L1M4c LINE L1 6 261 -6123 * 5957 156 48 9 chr3 24296126 24297392 -193739766 + L1MC1 LINE L1 5296 6613 0 428 235 84 8 chr3 24297390 24297509 -193739649 + L1ME1 LINE L1 6156 6283 -163 * 690 221 13 0 chr3 24297517 24297675 -193739483 + L1MA10 LINE L1 6175 6334 0 26 64 0 0 chr3 24297938 24297985 -193739173 + AT_rich Low_complexity Low_complexity 1 47 0 344 317 84 0 chr3 24298058 24298225 -193738933 + L1MC4a LINE L1 5733 5913 -1895 22 70 0 0 chr3 24299622 24299665 -193737493 + AT_rich Low_complexity Low_complexity 1 43 0 212 330 51 91 chr3 24299870 24300067 -193737091 - MIR3 SINE MIR -16 192 4 359 248 84 84 chr3 24300188 24300462 -193736696 + MLT1L LTR MaLR 12 285 -330 240 35 0 0 chr3 24300462 24300491 -193736667 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr3 24300795 24300829 -193736329 + AT_rich Low_complexity Low_complexity 1 34 0 10708 137 43 14 chr3 24300834 24303876 -193733282 + L1MA1 LINE L1 3177 6294 -8 2143 87 0 14 chr3 24304807 24305093 -193732065 + AluSx SINE Alu 1 282 -30 210 37 0 0 chr3 24305096 24305123 -193732035 + (CATA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr3 24305181 24305205 -193731953 + AT_rich Low_complexity Low_complexity 1 24 0 437 231 132 19 chr3 24305830 24306042 -193731116 + L1MC4 LINE L1 7807 8042 0 183 278 270 9 chr3 24309957 24310072 -193727086 - MIR SINE MIR -44 218 74 24 0 0 0 chr3 24310494 24310518 -193726640 + AT_rich Low_complexity Low_complexity 1 24 0 187 261 0 22 chr3 24310805 24310851 -193726307 + L2 LINE L2 3181 3225 -88 476 289 85 25 chr3 24311089 24311290 -193725868 + MIR SINE MIR 4 216 -46 * 506 258 46 62 chr3 24311271 24311465 -193725693 + MIR SINE MIR 6 196 -66 199 231 135 0 chr3 24311930 24311982 -193725176 - L2 LINE L2 -76 3237 3179 1064 257 123 20 chr3 24313095 24313492 -193723666 + MLT1J LTR MaLR 72 509 -2 220 308 96 0 chr3 24313843 24313947 -193723211 - L2 LINE L2 -3 3310 3197 872 343 70 24 chr3 24314012 24314360 -193722798 - L2 LINE L2 -409 2905 2530 2324 97 3 0 chr3 24314360 24314659 -193722499 + AluSg SINE Alu 1 300 -10 872 343 70 24 chr3 24314659 24314765 -193722393 - L2 LINE L2 -784 2530 2430 249 128 0 0 chr3 24317496 24317535 -193719623 - tRNA-Gly-GGA tRNA tRNA -36 39 1 2341 98 0 0 chr3 24317550 24317845 -193719313 - AluSx SINE Alu -17 295 1 609 337 81 10 chr3 24317970 24318376 -193718782 - MLT1L LTR MaLR -49 566 132 429 306 159 9 chr3 24318664 24318896 -193718262 + L3 LINE CR1 1116 1382 -195 368 328 87 6 chr3 24318988 24319171 -193717987 - MIR SINE MIR -45 217 20 262 309 74 54 chr3 24320437 24320586 -193716572 + MLT1K LTR MaLR 157 308 -280 416 184 26 0 chr3 24320695 24320771 -193716387 + MLT1K LTR MaLR 509 586 -2 227 347 0 10 chr3 24320908 24321006 -193716152 + L2 LINE L2 2890 2986 -286 263 419 7 13 chr3 24321101 24321256 -193715902 - L2 LINE L2 -567 2747 2594 382 277 96 50 chr3 24321261 24321637 -193715521 + L1ME4a LINE L1 5536 5928 -193 180 321 62 25 chr3 24321793 24321874 -193715284 - MIR SINE MIR -66 142 59 1118 134 0 6 chr3 24322482 24322646 -193714512 - AluSg/x SINE Alu -16 294 132 22 70 0 0 chr3 24323391 24323434 -193713724 + AT_rich Low_complexity Low_complexity 1 43 0 1872 132 7 14 chr3 24323437 24323726 -193713432 + AluJb SINE Alu 13 299 -13 222 91 0 0 chr3 24324966 24324999 -193712159 + (CA)n Simple_repeat Simple_repeat 2 34 0 31 58 0 0 chr3 24325205 24325257 -193711901 + AT_rich Low_complexity Low_complexity 1 52 0 26 64 0 0 chr3 24325415 24325462 -193711696 + AT_rich Low_complexity Low_complexity 1 47 0 1618 188 35 3 chr3 24325649 24325936 -193711222 - AluJo SINE Alu -11 301 6 212 316 153 0 chr3 24326621 24326719 -193710439 - L2 LINE L2 -4 3309 3197 819 153 8 0 chr3 24327264 24327388 -193709770 + FLAM_C SINE Alu 8 132 -11 241 163 82 0 chr3 24327654 24327703 -193709455 - MER116 DNA Mariner -27 53 1 29 0 0 0 chr3 24328001 24328030 -193709128 + AT_rich Low_complexity Low_complexity 1 29 0 1129 249 79 14 chr3 24328045 24328462 -193708696 + L1M4 LINE L1 4060 4503 -1643 1235 190 75 51 chr3 24328469 24328581 -193708577 - MER44D DNA MER2_type -1882 609 501 1613 137 149 3 chr3 24328581 24328896 -193708262 + MER46B DNA MER2_type 1 236 0 1235 190 75 51 chr3 24328896 24329114 -193708044 - MER44D DNA MER2_type -1990 501 1 1395 236 55 14 chr3 24329114 24329339 -193707819 + L1M4 LINE L1 4514 4728 -1418 1837 188 0 0 chr3 24329339 24329637 -193707521 + AluJb SINE Alu 1 298 -14 1395 236 55 14 chr3 24329637 24329826 -193707332 + L1M4 LINE L1 4728 4945 -1201 276 219 98 24 chr3 24330153 24330235 -193706923 + MER5A DNA MER1_type 99 186 -3 247 259 0 0 chr3 24330536 24330590 -193706568 + (TATG)n Simple_repeat Simple_repeat 2 55 0 535 264 98 15 chr3 24330670 24330935 -193706223 + L1MC5 LINE L1 7290 7576 -385 21 71 0 0 chr3 24331081 24331123 -193706035 + AT_rich Low_complexity Low_complexity 1 42 0 1125 202 0 18 chr3 24331323 24331546 -193705612 - MER20 DNA MER1_type 0 219 1 2990 244 74 54 chr3 24331869 24333408 -193703750 + L1ME LINE L1 17 1524 -5120 1896 133 73 3 chr3 24333408 24333723 -193703435 - MER1B DNA MER1_type 0 337 1 2990 244 74 54 chr3 24333723 24334512 -193702646 + L1ME LINE L1 1524 2296 -4348 1620 167 49 3 chr3 24334512 24334799 -193702359 - AluJb SINE Alu -12 300 1 2990 244 74 54 chr3 24334799 24334978 -193702180 + L1ME LINE L1 2296 4924 -1720 228 303 0 40 chr3 24335465 24335564 -193701594 + MLT2E LTR ERVL 40 134 -494 311 268 162 35 chr3 24335823 24336051 -193701107 + L1ME LINE L1 5462 5718 -926 569 286 94 28 chr3 24336139 24336565 -193700593 + L1ME LINE L1 5836 6289 -379 452 189 0 0 chr3 24336586 24336676 -193700482 - L1PB4 LINE L1 -2 6154 6065 265 327 26 39 chr3 24337050 24337206 -193699952 - L2 LINE L2 -606 2708 2555 2763 123 41 16 chr3 24337311 24337797 -193699361 + L1MA8 LINE L1 5340 5837 -454 575 157 75 37 chr3 24337816 24337950 -193699208 - L1M3 LINE L1 -1141 5005 4867 * 1593 176 84 4 chr3 24337949 24338398 -193698760 + L1M3 LINE L1 5007 5480 -703 363 149 90 15 chr3 24338663 24338730 -193698428 + AluS SINE Alu 1 72 -227 551 45 0 0 chr3 24338893 24338959 -193698199 - AluSq/x SINE Alu -181 131 66 3825 200 170 31 chr3 24339376 24340638 -193696520 - Charlie1 DNA MER1_type -2 2759 7 1882 173 3 38 chr3 24340651 24340997 -193696161 + MER1B DNA MER1_type 4 337 0 2554 210 29 15 chr3 24341017 24341541 -193695617 + MER77 LTR ERV1 54 584 -21 962 161 5 57 chr3 24341759 24341951 -193695207 - MER20 DNA MER1_type -37 182 1 296 306 0 31 chr3 24342261 24342359 -193694799 + MER5B DNA MER1_type 2 96 -82 602 278 91 20 chr3 24342362 24342560 -193694598 - L2 LINE L2 -2 3311 3100 3042 168 71 13 chr3 24342825 24343427 -193693731 - L1PB4 LINE L1 -13 6143 5507 2972 88 8 5 chr3 24343427 24343826 -193693332 + MLT2A1 LTR ERVL 1 400 -44 238 113 56 28 chr3 24343827 24343898 -193693260 + (TA)n Simple_repeat Simple_repeat 1 73 0 329 20 122 0 chr3 24343909 24343958 -193693200 + MLT2A1 LTR ERVL 399 453 0 2705 164 93 17 chr3 24343958 24344036 -193693122 - L1PB4 LINE L1 -645 5511 5440 906 64 112 0 chr3 24344036 24344161 -193692997 + MER85 DNA T2_type 1 139 0 2705 164 93 17 chr3 24344161 24344838 -193692320 - L1PB4 LINE L1 -716 5440 4710 1719 154 0 0 chr3 24345257 24345516 -193691642 + AluSx SINE Alu 49 307 -5 316 224 116 99 chr3 24346161 24346393 -193690765 + L1MEc LINE L1 1708 1943 -4453 347 274 80 33 chr3 24346414 24346626 -193690532 + L1MEc LINE L1 1731 1952 -4444 4236 238 55 27 chr3 24346704 24347138 -193690020 + L1MEc LINE L1 2079 2499 -3716 2125 72 0 75 chr3 24347138 24347459 -193689699 + AluY SINE Alu 1 297 -14 4236 238 55 27 chr3 24347459 24348662 -193688496 + L1MEc LINE L1 2499 3761 -2454 2192 197 53 31 chr3 24348725 24348799 -193688359 + L1MB7 LINE L1 5575 5646 -538 2267 84 0 32 chr3 24348799 24349107 -193688051 + AluSq SINE Alu 1 298 -15 2192 197 53 31 chr3 24349107 24349620 -193687538 + L1MB7 LINE L1 5646 6175 -9 219 327 50 30 chr3 24349677 24349778 -193687380 + L3b LINE CR1 1286 1388 -195 8571 132 16 54 chr3 24349905 24351202 -193685956 + L1MA2 LINE L1 3656 4838 -1467 2217 101 10 3 chr3 24351202 24351500 -193685658 + AluSx SINE Alu 1 300 -12 8571 132 16 54 chr3 24351500 24352331 -193684827 + L1MA2 LINE L1 4838 5699 -606 217 200 42 33 chr3 24352347 24352467 -193684691 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 3218 107 50 53 chr3 24352482 24353080 -193684078 + L1MA2 LINE L1 5709 6304 0 2530 152 31 0 chr3 24353332 24353747 -193683411 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr3 24354107 24354128 -193683030 + AT_rich Low_complexity Low_complexity 1 21 0 2075 125 149 8 chr3 24355165 24355540 -193681618 - MSTA LTR MaLR 0 428 1 1600 173 184 11 chr3 24356002 24356366 -193680792 - MSTA LTR MaLR -1 427 1 2909 122 11 13 chr3 24356366 24356816 -193680342 - MSTA-int LTR MaLR 0 1580 1132 1039 263 86 41 chr3 24356960 24357379 -193679779 - MLT1J1 LTR MaLR -8 438 1 350 233 69 43 chr3 24357379 24357495 -193679663 - MER5A DNA MER1_type -40 149 31 269 281 74 66 chr3 24357389 24357510 -193679648 + MER5A DNA MER1_type 63 184 -5 * 525 322 163 36 chr3 24357803 24358381 -193678777 + L2 LINE L2 2262 2912 -402 250 371 16 8 chr3 24358484 24358608 -193678550 - L2 LINE L2 -999 2315 2191 1792 162 7 10 chr3 24358736 24359032 -193678126 + AluJo SINE Alu 1 295 -17 2437 196 143 4 chr3 24359050 24359742 -193677416 + L1MB8 LINE L1 3959 4746 -1400 844 292 27 95 chr3 24359742 24360300 -193676858 + MER34 LTR ERV1 1 520 -22 1424 172 7 24 chr3 24360330 24360548 -193676610 + L1MB8 LINE L1 4742 4962 -1184 189 0 0 0 chr3 24360548 24360569 -193676589 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 357 24 0 0 chr3 24360568 24360610 -193676548 + (GA)n Simple_repeat Simple_repeat 2 43 0 1424 172 7 24 chr3 24360569 24360681 -193676477 + L1MB8 LINE L1 4962 5026 -1120 748 225 146 36 chr3 24360690 24360943 -193676215 - MLT1C LTR MaLR 0 467 187 2481 157 86 48 chr3 24360955 24361478 -193675680 + MER21B LTR ERV1 320 862 -1 616 173 83 18 chr3 24361493 24361596 -193675562 + L1MB8 LINE L1 5338 5433 -745 1575 181 0 38 chr3 24361596 24361935 -193675223 + AluJb SINE Alu 3 330 0 616 173 83 18 chr3 24361935 24362563 -193674595 + L1MB8 LINE L1 5433 6176 -2 2598 68 0 0 chr3 24362896 24363203 -193673955 + AluY SINE Alu 2 308 -3 2573 63 0 0 chr3 24363809 24364112 -193673046 - AluY SINE Alu -8 303 1 2355 101 0 0 chr3 24365113 24365420 -193671738 + AluSc SINE Alu 2 308 -1 192 40 0 0 chr3 24365680 24365705 -193671453 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1861 152 69 6 chr3 24365964 24366299 -193670859 + L1MB7 LINE L1 5829 6184 0 273 286 38 60 chr3 24366469 24366602 -193670556 + Charlie8 DNA MER1_type 94 223 -2194 2305 100 0 0 chr3 24367629 24367928 -193669230 - AluSx SINE Alu -13 299 1 890 192 126 0 chr3 24368394 24368576 -193668582 + MER3 DNA MER1_type 5 209 0 270 284 9 9 chr3 24369741 24369850 -193667308 + (CCG)n Simple_repeat Simple_repeat 2 110 0 284 62 0 21 chr3 24369905 24369953 -193667205 + (CCG)n Simple_repeat Simple_repeat 1 47 0 314 324 111 56 chr3 24369976 24370282 -193666876 + L1M2 LINE L1 462 784 -6065 * 382 308 165 56 chr3 24370261 24370709 -193666449 - L1M2 LINE L1 -5596 1253 757 186 43 0 0 chr3 24371376 24371399 -193665759 + (A)n Simple_repeat Simple_repeat 1 23 0 220 235 39 0 chr3 24372253 24372304 -193664854 + MIR SINE MIR 88 140 -122 8680 115 21 28 chr3 24372425 24373671 -193663487 - HSMAR2 DNA Mariner -2 1300 62 1754 182 27 0 chr3 24373671 24373967 -193663191 + AluSx SINE Alu 1 304 -8 8680 115 21 28 chr3 24373967 24374029 -193663129 - HSMAR2 DNA Mariner -1240 62 1 2309 121 0 0 chr3 24374075 24374381 -193662777 + AluSx SINE Alu 1 306 -6 296 253 92 0 chr3 24374941 24375028 -193662130 - MIR SINE MIR -110 152 58 1623 213 7 7 chr3 24375155 24375465 -193661693 + AluJo SINE Alu 1 310 -2 574 302 80 18 chr3 24375471 24375913 -193661245 + L1MEd LINE L1 1072 1627 -863 21 36 0 0 chr3 24376247 24376275 -193660883 + AT_rich Low_complexity Low_complexity 1 28 0 479 319 21 14 chr3 24376507 24376651 -193660507 - LTR67 LTR ERVL -377 180 36 309 330 91 43 chr3 24376872 24377266 -193659892 + L1MEd LINE L1 2104 2516 -3613 1602 143 22 0 chr3 24377272 24377502 -193659656 + AluSx SINE Alu 1 235 -77 26 30 0 0 chr3 24378157 24378190 -193658968 + AT_rich Low_complexity Low_complexity 1 33 0 836 185 205 21 chr3 24378197 24378557 -193658601 + L1MEc LINE L1 2176 2560 -3655 4636 176 46 39 chr3 24378583 24380027 -193657131 + L1MA9 LINE L1 4374 5825 -487 2007 131 6 19 chr3 24380027 24380340 -193656818 + AluSg SINE Alu 1 309 -1 4636 176 46 39 chr3 24380340 24380794 -193656364 + L1MA9 LINE L1 5825 6274 -38 2419 214 119 13 chr3 24380781 24381496 -193655662 + L1MEc LINE L1 2582 3372 -2843 * 3150 290 112 31 chr3 24381538 24382046 -193655112 - L2 LINE L2 -1217 2097 1631 1954 210 174 2 chr3 24382046 24382489 -193654669 - LTR40a LTR ERVL 0 519 1 3150 290 112 31 chr3 24382489 24383420 -193653738 - L2 LINE L2 -1683 1631 542 23 0 0 0 chr3 24383429 24383452 -193653706 + AT_rich Low_complexity Low_complexity 1 23 0 560 296 66 36 chr3 24383566 24383762 -193653396 + MIR3 SINE MIR 4 205 -3 257 322 15 68 chr3 24384380 24384585 -193652573 - L2 LINE L2 -24 3289 3096 223 319 32 32 chr3 24384595 24384689 -193652469 + L2 LINE L2 3173 3266 -47 278 341 182 11 chr3 24384708 24384884 -193652274 - L2 LINE L2 -245 3068 2863 211 219 0 62 chr3 24384932 24384996 -193652162 + CT-rich Low_complexity Low_complexity 4 63 0 291 353 147 0 chr3 24384996 24385186 -193651972 - L2 LINE L2 -567 2747 2530 301 125 0 0 chr3 24385207 24385255 -193651903 + AluJ/FLAM SINE Alu 37 84 -218 1021 241 106 20 chr3 24385319 24385667 -193651491 - L2 LINE L2 -807 2507 2130 317 277 151 25 chr3 24386195 24386314 -193650844 + L2 LINE L2 3180 3313 0 981 236 86 90 chr3 24386557 24387104 -193650054 + MLT1H LTR MaLR 1 545 -4 1127 292 21 3 chr3 24387177 24387506 -193649652 + L1MC4a LINE L1 5580 5914 -1894 2232 105 0 7 chr3 24387520 24387825 -193649333 - AluSc SINE Alu -6 303 1 2268 104 7 3 chr3 24387869 24388176 -193648982 + AluSx SINE Alu 1 308 -4 201 94 0 0 chr3 24388308 24388340 -193648818 + (CAG)n Simple_repeat Simple_repeat 3 34 0 245 29 29 0 chr3 24390646 24390680 -193646478 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1415 219 63 27 chr3 24390688 24391162 -193645996 + L1MC5 LINE L1 7411 7901 -60 1298 176 112 46 chr3 24391164 24391436 -193645722 + MER2 DNA MER2_type 2 300 -45 1111 91 24 18 chr3 24391436 24391601 -193645557 - L1MA5 LINE L1 0 6300 6135 1298 176 112 46 chr3 24391601 24391651 -193645507 + MER2 DNA MER2_type 300 345 0 1892 164 3 26 chr3 24392047 24392358 -193644800 - AluJo SINE Alu -8 304 1 942 228 27 0 chr3 24392751 24392935 -193644223 + MER5A DNA MER1_type 1 189 0 2000 121 17 3 chr3 24393351 24393648 -193643510 + AluSx SINE Alu 4 304 -8 325 131 82 0 chr3 24393681 24393742 -193643416 + Charlie5 DNA MER1_type 2498 2563 -49 697 125 50 0 chr3 24394140 24394260 -193642898 - L1MA3 LINE L1 0 6305 6180 180 356 0 46 chr3 24394313 24394400 -193642758 - MIR SINE MIR -171 91 9 477 338 13 6 chr3 24394593 24394750 -193642408 - MER117 DNA MER1_type 0 197 40 641 228 73 49 chr3 24395128 24395366 -193641792 - MLT1J LTR MaLR 0 511 338 1756 153 115 24 chr3 24395438 24395518 -193641640 + MLT1D LTR MaLR 1 72 -433 2060 124 78 12 chr3 24395518 24395849 -193641309 - THE1A LTR MaLR -2 353 1 1756 153 115 24 chr3 24395849 24396107 -193641051 + MLT1D LTR MaLR 72 370 -135 3187 176 0 19 chr3 24396123 24396639 -193640519 + MLT2B3 LTR ERVL 3 508 -46 387 89 0 0 chr3 24396643 24396699 -193640459 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 357 119 0 0 chr3 24396700 24396753 -193640405 + MLT2B2 LTR ERVL 410 463 -47 240 111 0 0 chr3 24396753 24396789 -193640369 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 341 45 0 0 chr3 24396790 24396834 -193640324 + MLT2B2 LTR ERVL 410 453 -62 216 67 0 0 chr3 24396834 24396864 -193640294 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 558 99 55 22 chr3 24396865 24396914 -193640244 + MLT2B3 LTR ERVL 460 506 -48 657 69 0 0 chr3 24396914 24397001 -193640157 + (TCCA)n Simple_repeat Simple_repeat 3 89 0 558 99 55 22 chr3 24397001 24397042 -193640116 + MLT2B3 LTR ERVL 506 553 -1 4607 196 37 17 chr3 24397043 24398383 -193638775 + MLT1A1-int LTR MaLR 1 1370 -1 2287 167 31 0 chr3 24398384 24398738 -193638420 + MLT1A1 LTR MaLR 1 365 0 529 158 21 0 chr3 24398738 24398833 -193638325 + MLT1D LTR MaLR 409 505 0 358 298 56 25 chr3 24398888 24399049 -193638109 - MLT1J LTR MaLR -343 168 3 183 330 107 0 chr3 24399062 24399165 -193637993 - MIR SINE MIR -20 242 129 326 165 13 0 chr3 24399410 24399489 -193637669 + CT-rich Low_complexity Low_complexity 2 81 0 251 91 0 23 chr3 24399491 24399535 -193637623 + (TG)n Simple_repeat Simple_repeat 2 44 0 2579 162 115 9 chr3 24399539 24400085 -193637073 + Tigger6 DNA MER2_type 986 1597 0 1260 120 27 0 chr3 24400605 24400788 -193636370 + MSTB1 LTR MaLR 1 188 -244 974 189 12 0 chr3 24400788 24400952 -193636206 + FAM SINE Alu 1 166 -19 1003 191 55 34 chr3 24400952 24401187 -193635971 + MSTB1 LTR MaLR 193 432 0 344 327 24 38 chr3 24401630 24401841 -193635317 - MLT1L LTR MaLR -407 208 1 2374 105 3 0 chr3 24401936 24402242 -193634916 + AluSc SINE Alu 1 307 -2 200 283 236 0 chr3 24403146 24403252 -193633906 + L2 LINE L2 3183 3313 0 569 238 33 0 chr3 24403419 24403541 -193633617 + MER5B DNA MER1_type 1 126 -52 2201 113 0 0 chr3 24403728 24404019 -193633139 - AluSx SINE Alu -21 291 1 182 37 37 0 chr3 24405852 24405879 -193631279 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1677 192 3 0 chr3 24405883 24406175 -193630983 - AluJo SINE Alu -19 293 1 2081 108 4 7 chr3 24406205 24406514 -193630644 + AluSg SINE Alu 3 310 0 282 182 0 76 chr3 24406693 24406759 -193630399 - MER3 DNA MER1_type -5 204 144 2222 213 34 45 chr3 24407136 24407672 -193629486 + MLT1E LTR MaLR 62 591 -2 356 262 74 90 chr3 24408190 24408434 -193628724 + LTR16A1 LTR ERVL 218 457 0 2034 132 7 0 chr3 24409181 24409482 -193627676 - AluSx SINE Alu 0 304 2 880 235 169 37 chr3 24409556 24409997 -193627161 - MLT1G1 LTR MaLR 0 595 20 1938 151 0 10 chr3 24410273 24410577 -193626581 - AluJb SINE Alu -11 301 1 1637 158 34 34 chr3 24410581 24410878 -193626280 - AluJb SINE Alu -15 297 1 866 158 25 54 chr3 24410893 24411061 -193626097 - Charlie5 DNA MER1_type -203 2421 2258 1939 91 36 39 chr3 24411061 24411369 -193625789 + AluSx SINE Alu 1 307 -5 866 158 25 54 chr3 24411369 24411403 -193625755 - Charlie5 DNA MER1_type -366 2258 2225 361 151 279 0 chr3 24411385 24411471 -193625687 - Charlie5 DNA MER1_type -2485 127 18 * 853 164 28 68 chr3 24411473 24411650 -193625508 - FRAM SINE Alu -14 162 1 1896 137 11 4 chr3 24411660 24411938 -193625220 - AluSx SINE Alu -32 280 1 207 0 0 0 chr3 24411983 24412006 -193625152 + (CA)n Simple_repeat Simple_repeat 1 23 0 250 182 0 0 chr3 24412011 24412055 -193625103 + MLT2F LTR ERVL 620 663 0 923 98 8 0 chr3 24412430 24412552 -193624606 - AluSq/x SINE Alu -189 123 1 37 53 0 13 chr3 24413629 24413665 -193623493 + AT_rich Low_complexity Low_complexity 1 36 -39 1887 154 10 16 chr3 24413665 24413971 -193623187 - AluJo SINE Alu -8 304 1 37 53 0 13 chr3 24413971 24414010 -193623148 + AT_rich Low_complexity Low_complexity 36 75 0 2105 131 0 0 chr3 24414063 24414354 -193622804 - AluSx SINE Alu -21 291 1 1667 156 34 30 chr3 24414358 24414653 -193622505 - AluJb SINE Alu -15 297 2 329 159 0 48 chr3 24414653 24414716 -193622442 - AluJo SINE Alu -159 143 84 1041 203 43 23 chr3 24414917 24415173 -193621985 - LTR16A1 LTR ERVL -19 438 178 224 158 0 88 chr3 24415638 24415695 -193621463 - L2 LINE L2 -1 3312 3261 367 206 0 14 chr3 24415698 24415771 -193621387 + MARNA DNA Mariner 395 466 -120 249 211 282 0 chr3 24416044 24416115 -193621043 - MIR SINE MIR -16 246 156 674 241 146 0 chr3 24416136 24416294 -193620864 - MER5A DNA MER1_type 0 189 9 459 229 59 8 chr3 24416971 24417089 -193620069 - MIR SINE MIR -74 188 65 695 317 70 0 chr3 24417091 24417321 -193619837 - MIR SINE MIR -10 252 7 595 261 18 45 chr3 24417965 24418187 -193618971 - LTR33 LTR ERVL -305 216 1 224 171 98 0 chr3 24418981 24419022 -193618136 + MIR SINE MIR 218 262 0 44650 42 4 0 chr3 24419176 24425308 -193611850 - L1PA4 LINE L1 0 6155 1 1890 165 3 0 chr3 24425308 24425611 -193611547 - AluSx SINE Alu -8 304 1 666 205 56 6 chr3 24425641 24425802 -193611356 + L1MC5 LINE L1 7257 7425 -536 925 213 87 42 chr3 24425805 24425886 -193611272 + MLT1B LTR MaLR 3 79 -311 2069 125 125 57 chr3 24425886 24426287 -193610871 - MSTA LTR MaLR 0 428 1 925 213 87 42 chr3 24426287 24426605 -193610553 + MLT1B LTR MaLR 79 358 -32 1542 171 16 85 chr3 24426607 24426695 -193610463 - MER2 DNA MER2_type -2 343 251 1608 140 29 59 chr3 24426695 24426829 -193610329 + AluJo SINE Alu 1 137 -175 2338 110 0 0 chr3 24426829 24427129 -193610029 + AluSx SINE Alu 1 300 -12 1608 140 29 59 chr3 24427129 24427301 -193609857 + AluJo SINE Alu 137 298 -14 1542 171 16 85 chr3 24427301 24427575 -193609583 - MER2 DNA MER2_type -94 251 6 246 114 0 0 chr3 24427579 24427614 -193609544 + MLT1B LTR MaLR 356 390 0 2237 55 0 24 chr3 24427666 24427980 -193609178 + AluY SINE Alu 7 311 0 330 26 0 0 chr3 24428002 24428041 -193609117 + (TG)n Simple_repeat Simple_repeat 1 39 0 812 183 106 134 chr3 24428065 24428364 -193608794 + L1MC5 LINE L1 7483 7766 -195 2297 114 62 0 chr3 24428364 24428716 -193608442 + L1MA5 LINE L1 5925 6298 -2 812 183 106 134 chr3 24428716 24428887 -193608271 + L1MC5 LINE L1 7766 7940 -21 549 304 89 57 chr3 24429053 24429610 -193607548 - L2 LINE L2 -3 3310 2713 588 264 158 29 chr3 24429818 24430252 -193606906 - MLT1G LTR MaLR 0 590 64 1969 210 114 62 chr3 24430383 24431060 -193606098 - MER50 LTR ERV1 -5 729 18 373 304 133 15 chr3 24432305 24432440 -193604718 + L2 LINE L2 3117 3267 -5 1095 190 33 5 chr3 24432461 24432645 -193604513 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr3 24432893 24432921 -193604237 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 24432947 24432976 -193604182 + AT_rich Low_complexity Low_complexity 1 29 0 264 271 12 35 chr3 24433854 24433939 -193603219 - Charlie8 DNA MER1_type -2309 108 26 2010 132 0 7 chr3 24434314 24434601 -193602557 + AluJb SINE Alu 3 287 -25 2289 96 7 0 chr3 24434859 24435152 -193602006 + AluSp SINE Alu 1 295 -18 2303 108 0 0 chr3 24435269 24435565 -193601593 + AluSg SINE Alu 1 296 -14 560 226 0 73 chr3 24435973 24436110 -193601048 - MIR SINE MIR -122 140 14 531 330 54 8 chr3 24436376 24436615 -193600543 + MIR SINE MIR 1 250 -12 1909 168 0 3 chr3 24436623 24436921 -193600237 + AluSx SINE Alu 1 297 -15 586 309 149 19 chr3 24437043 24437547 -193599611 - L2 LINE L2 0 3313 2722 214 286 65 13 chr3 24437547 24437624 -193599534 - L2 LINE L2 -719 2595 2515 226 293 300 20 chr3 24437797 24437947 -193599211 + MIR SINE MIR 45 236 -26 304 255 69 20 chr3 24438412 24438514 -193598644 - MIR SINE MIR 0 262 156 843 319 44 9 chr3 24438633 24439088 -193598070 + L1M4 LINE L1 4796 5266 -880 31 20 0 20 chr3 24439088 24439118 -193598040 + AT_rich Low_complexity Low_complexity 1 31 -17 2277 103 0 10 chr3 24439118 24439420 -193597738 - AluSx SINE Alu -13 299 1 31 20 0 20 chr3 24439420 24439438 -193597720 + AT_rich Low_complexity Low_complexity 31 48 0 6261 143 11 7 chr3 24439560 24441073 -193596085 - L1PA15 LINE L1 -21 6144 4631 567 256 83 119 chr3 24441910 24442499 -193594659 + MLT1K LTR MaLR 21 588 0 1632 198 0 0 chr3 24442739 24443012 -193594146 - AluJb SINE Alu -39 273 1 1515 200 72 9 chr3 24443012 24443332 -193593826 - MSTD LTR MaLR -56 340 1 276 340 7 42 chr3 24443949 24444093 -193593065 + MER91A DNA MER1_type 21 159 -37 258 95 0 0 chr3 24444325 24444367 -193592791 + (TG)n Simple_repeat Simple_repeat 1 42 0 234 105 0 0 chr3 24444367 24444405 -193592753 + (GA)n Simple_repeat Simple_repeat 2 39 0 477 0 0 0 chr3 24444407 24444460 -193592698 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 460 212 288 49 chr3 24444586 24444850 -193592308 - MLT1H LTR MaLR -2 547 221 922 211 93 26 chr3 24445102 24445372 -193591786 - MER33 DNA MER1_type -35 289 2 489 287 22 7 chr3 24445400 24445536 -193591622 - MIR SINE MIR -123 139 2 216 213 21 0 chr3 24446130 24446177 -193590981 + L2 LINE L2 3225 3272 0 306 159 0 0 chr3 24446637 24446706 -193590452 + CT-rich Low_complexity Low_complexity 2 70 0 2353 69 14 0 chr3 24446899 24447189 -193589969 - AluY SINE Alu -17 294 1 27 49 0 0 chr3 24447348 24447389 -193589769 + AT_rich Low_complexity Low_complexity 1 41 0 5625 78 11 13 chr3 24447391 24448108 -193589050 - L1PB1 LINE L1 0 6802 6087 1921 220 7 2 chr3 24448116 24448561 -193588597 - L1PB1 LINE L1 -783 6014 5568 264 394 6 28 chr3 24449131 24449311 -193587847 - L2 LINE L2 -232 3040 2865 198 396 68 9 chr3 24449536 24449857 -193587301 - L2 LINE L2 -744 2570 2231 312 274 232 18 chr3 24449878 24450042 -193587116 + MLT1L LTR MaLR 42 240 -375 295 281 99 26 chr3 24450093 24450285 -193586873 + MLT1J LTR MaLR 217 422 -89 13572 235 34 19 chr3 24450561 24453670 -193583488 - L1PB1 LINE L1 -1522 5275 1575 2168 134 0 0 chr3 24453670 24453969 -193583189 - AluSq SINE Alu -14 299 1 13572 235 34 19 chr3 24453969 24455566 -193581592 - L1PB1 LINE L1 -5222 1575 2 396 0 0 0 chr3 24456012 24456056 -193581102 + (GA)n Simple_repeat Simple_repeat 2 45 0 617 278 42 47 chr3 24456157 24456369 -193580789 - MIR SINE MIR -21 241 31 23 0 0 0 chr3 24456438 24456461 -193580697 + AT_rich Low_complexity Low_complexity 1 23 0 2246 83 0 0 chr3 24456467 24456744 -193580414 + AluSg SINE Alu 1 277 -33 2068 210 24 7 chr3 24457223 24457646 -193579512 - MER63B DNA MER1_type -1 435 6 198 396 68 9 chr3 24457933 24458254 -193578904 - L2 LINE L2 -744 2570 2231 346 251 246 17 chr3 24458275 24458454 -193578704 + MLT1L LTR MaLR 42 261 -354 413 286 117 23 chr3 24458490 24458756 -193578402 + MLT1J LTR MaLR 219 509 -2 21 0 0 0 chr3 24459905 24459926 -193577232 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr3 24460196 24460225 -193576933 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 1180 114 5 22 chr3 24460240 24460424 -193576734 - AluSg/x SINE Alu 0 309 129 775 158 0 9 chr3 24460572 24460686 -193576472 - AluSq/x SINE Alu -199 114 2 2161 119 0 3 chr3 24460696 24460998 -193576160 - AluSc SINE Alu -8 301 1 232 247 82 41 chr3 24461018 24461115 -193576043 - L1ME LINE L1 -297 5873 5773 626 178 180 29 chr3 24461309 24461560 -193575598 - MLT1H1 LTR MaLR 0 555 279 282 225 25 100 chr3 24461696 24461816 -193575342 - MER103 DNA DNA -1 165 55 331 265 45 113 chr3 24462319 24462513 -193574645 - L1ME4a LINE L1 -115 6006 5855 1651 150 24 31 chr3 24462513 24462800 -193574358 + AluJo SINE Alu 11 295 -17 331 265 45 113 chr3 24462800 24463031 -193574127 - L1ME4a LINE L1 -266 5855 5610 259 353 12 0 chr3 24463233 24463318 -193573840 + L2 LINE L2 3102 3187 -85 458 244 282 24 chr3 24463343 24463630 -193573528 - L2 LINE L2 -4 3309 2949 1228 255 73 0 chr3 24463753 24464082 -193573076 - LTR16A LTR ERVL -9 441 89 280 154 39 0 chr3 24464084 24464136 -193573022 + LTR50 LTR ERVL 561 614 -181 606 262 99 44 chr3 24464346 24464640 -193572518 + LTR33A LTR ERVL 2 311 -212 403 284 103 4 chr3 24464659 24465023 -193572135 + LTR16A LTR ERVL 17 450 0 * 657 199 78 6 chr3 24465023 24465187 -193571971 + LTR33A LTR ERVL 320 495 -28 6546 159 14 3 chr3 24465188 24466935 -193570223 + L1P5 LINE L1 4020 5780 -371 1145 63 0 0 chr3 24466935 24467074 -193570084 + L1PB1 LINE L1 6009 6150 -1 229 214 0 0 chr3 24467078 24467120 -193570038 + LTR33A LTR ERVL 482 523 0 24 0 0 0 chr3 24467199 24467223 -193569935 + AT_rich Low_complexity Low_complexity 1 24 0 1053 209 0 0 chr3 24467249 24467426 -193569732 - MER8 DNA MER2_type -62 177 1 2894 157 70 67 chr3 24467489 24468101 -193569057 - LTR18B LTR ERVL 0 614 1 399 206 10 10 chr3 24468352 24468449 -193568709 + MER96 DNA MER1_type? 1 97 -78 823 92 92 46 chr3 24468479 24468610 -193568548 + FRAM SINE Alu 33 169 -7 1258 199 170 26 chr3 24468765 24469264 -193567894 - LTR50 LTR ERVL -104 691 30 341 215 21 43 chr3 24469263 24469356 -193567802 - MLT1E LTR MaLR -502 91 1 * 2250 102 0 3 chr3 24470104 24470397 -193566761 + AluSc SINE Alu 1 292 -17 336 90 0 90 chr3 24470594 24470661 -193566497 - MER53 DNA DNA 0 189 129 * 719 180 30 6 chr3 24470638 24470805 -193566353 + MER53 DNA DNA 7 177 -12 * 862 159 29 0 chr3 24470655 24470825 -193566333 - MER53 DNA DNA -12 177 3 462 78 0 0 chr3 24472086 24472150 -193565008 - Alu SINE Alu -9 302 239 265 128 0 0 chr3 24472150 24472189 -193564969 - Alu SINE Alu -263 39 1 2022 131 66 102 chr3 24472950 24473022 -193564136 - MSTB LTR MaLR 0 426 353 2074 121 4 4 chr3 24473022 24473303 -193563855 + AluSx SINE Alu 1 281 -31 2022 131 66 102 chr3 24473303 24473672 -193563486 - MSTB LTR MaLR -73 353 1 1542 212 98 109 chr3 24474153 24474972 -193562186 - Charlie2 DNA MER1_type -4 2858 2052 2098 129 7 0 chr3 24474972 24475266 -193561892 + AluSx SINE Alu 1 296 -16 1542 212 98 109 chr3 24475266 24475461 -193561697 - Charlie2 DNA MER1_type -810 2052 1856 1243 192 123 44 chr3 24475493 24475899 -193561259 - LTR56 LTR ERV1 0 445 8 965 190 84 18 chr3 24475903 24476129 -193561029 - Charlie2 DNA MER1_type -2465 317 77 411 194 32 0 chr3 24476175 24476268 -193560890 + MER5A DNA MER1_type 14 109 -80 1200 138 11 5 chr3 24477692 24477880 -193559278 + MER5A DNA MER1_type 1 189 0 882 150 0 8 chr3 24478171 24478304 -193558854 + AluJo SINE Alu 5 136 -176 225 282 107 0 chr3 24479073 24479176 -193557982 - MIR3 SINE MIR -23 185 72 291 299 11 0 chr3 24479202 24479289 -193557869 - MIR3 SINE MIR -112 96 9 795 211 47 6 chr3 24479414 24479585 -193557573 + MER5B DNA MER1_type 1 178 0 2197 96 7 0 chr3 24479679 24479980 -193557178 - AluSp SINE Alu 0 303 1 270 259 0 0 chr3 24480610 24480664 -193556494 - L2 LINE L2 -10 3303 3250 490 139 12 35 chr3 24481387 24481473 -193555685 + FLAM_A SINE Alu 48 131 -11 2379 91 3 10 chr3 24481473 24481780 -193555378 + AluSx SINE Alu 1 305 -7 819 246 6 62 chr3 24482175 24482272 -193554886 + L1MC5 LINE L1 7611 7712 -249 1429 160 91 61 chr3 24482272 24482647 -193554511 + MLT1B LTR MaLR 1 386 -4 819 246 6 62 chr3 24482647 24482874 -193554284 + L1MC5 LINE L1 7712 7917 -44 22 0 0 0 chr3 24483007 24483029 -193554129 + AT_rich Low_complexity Low_complexity 1 22 0 519 271 83 48 chr3 24483119 24483348 -193553810 - MIR SINE MIR -6 256 20 909 275 56 51 chr3 24483879 24484327 -193552831 + L2 LINE L2 2860 3309 -4 240 291 89 0 chr3 24484418 24484497 -193552661 - L2 LINE L2 -204 3068 2983 280 146 55 0 chr3 24484500 24484555 -193552603 + MLT1D LTR MaLR 1 58 -447 2310 123 27 30 chr3 24484566 24484919 -193552239 - THE1C LTR MaLR 0 375 22 6476 60 8 42 chr3 24484919 24485774 -193551384 - LTR12 LTR ERV1 0 826 1 2310 123 27 30 chr3 24485774 24485793 -193551365 - THE1C LTR MaLR -353 22 4 2034 173 33 62 chr3 24485793 24486237 -193550921 + MLT1D LTR MaLR 75 505 0 1415 277 40 3 chr3 24486474 24486853 -193550305 + LTR16A LTR ERVL 54 446 -4 216 301 86 0 chr3 24486940 24487033 -193550125 - L2 LINE L2 -644 2670 2570 3196 122 33 2 chr3 24487119 24487756 -193549402 + L1MA8 LINE L1 5111 5768 -523 13098 111 12 14 chr3 24487757 24488741 -193548417 + Tigger1 DNA MER2_type 486 1470 -948 2304 94 0 38 chr3 24488741 24489059 -193548099 + AluY SINE Alu 1 306 -5 13098 111 12 14 chr3 24489059 24489559 -193547599 + Tigger1 DNA MER2_type 1470 1969 -449 2309 102 7 0 chr3 24489559 24489862 -193547296 + AluY SINE Alu 1 305 -6 13098 111 12 14 chr3 24489862 24490188 -193546970 + Tigger1 DNA MER2_type 1969 2297 -121 354 45 0 0 chr3 24490188 24490232 -193546926 + (TA)n Simple_repeat Simple_repeat 1 44 0 13098 111 12 14 chr3 24490232 24490352 -193546806 + Tigger1 DNA MER2_type 2297 2416 -2 924 159 34 0 chr3 24490352 24490528 -193546630 + L1MA8 LINE L1 6106 6287 -4 290 226 123 45 chr3 24490719 24490803 -193546355 - L3 LINE CR1 -92 1485 1409 2710 99 11 8 chr3 24490803 24491175 -193545983 + THE1C LTR MaLR 1 373 -2 290 226 123 45 chr3 24491175 24491245 -193545913 - L3 LINE CR1 -168 1409 1319 470 300 111 37 chr3 24491257 24491433 -193545725 + MIR SINE MIR 2 164 -98 2496 51 7 3 chr3 24491433 24491729 -193545429 + AluY SINE Alu 1 297 -14 2304 108 3 0 chr3 24491735 24492032 -193545126 + AluSg SINE Alu 1 298 -12 470 300 111 37 chr3 24492032 24492091 -193545067 + MIR SINE MIR 168 262 0 790 212 58 32 chr3 24493001 24493190 -193543968 + MER63B DNA MER1_type 1 194 -242 207 88 29 0 chr3 24493205 24493239 -193543919 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 236 111 0 0 chr3 24493242 24493278 -193543880 - L2 LINE L2 -1 3271 3236 2110 238 58 49 chr3 24493449 24494205 -193542953 + L2 LINE L2 1968 2730 -584 2360 69 0 44 chr3 24494311 24494630 -193542528 - AluY SINE Alu -6 305 1 443 113 21 124 chr3 24494842 24494878 -193542280 - L1ME1 LINE L1 -8 6158 6120 1633 173 95 0 chr3 24494878 24495162 -193541996 - AluJb SINE Alu -1 311 1 443 113 21 124 chr3 24495162 24495222 -193541936 - L1ME1 LINE L1 -46 6120 6072 3349 107 95 38 chr3 24495369 24495911 -193541247 + LTR24C LTR ERV1 1 582 -53 1895 139 0 7 chr3 24495911 24496184 -193540974 - AluSx SINE Alu -21 291 21 3349 107 95 38 chr3 24496184 24496240 -193540918 + LTR24C LTR ERV1 582 633 -2 1733 186 34 33 chr3 24496243 24496660 -193540498 + MLT2B1 LTR ERVL 1 414 0 45 79 0 0 chr3 24497037 24497138 -193540020 + AT_rich Low_complexity Low_complexity 1 101 0 229 289 165 10 chr3 24497227 24497324 -193539834 + MIR SINE MIR 16 127 -81 455 302 121 0 chr3 24497325 24497474 -193539684 - MER96 DNA MER1_type? -3 172 6 254 303 13 0 chr3 24497479 24497555 -193539603 + MIR3 SINE MIR 120 196 -12 22 0 0 0 chr3 24497946 24497968 -193539190 + AT_rich Low_complexity Low_complexity 1 22 0 1785 169 53 11 chr3 24497995 24498351 -193538807 - MER63 DNA MER1_type 0 1061 691 2105 227 100 27 chr3 24498799 24499494 -193537664 + Charlie7 DNA MER1_type 1660 2415 -197 875 178 33 11 chr3 24499494 24499674 -193537484 - L1PA16 LINE L1 -14 6152 5969 2105 227 100 27 chr3 24499674 24499727 -193537431 + Charlie7 DNA MER1_type 2415 2463 -149 433 217 0 0 chr3 24499727 24499810 -193537348 + MER5A DNA MER1_type 12 94 -95 231 222 74 0 chr3 24500094 24500148 -193537010 - MIR SINE MIR 0 262 205 266 237 17 0 chr3 24500157 24500216 -193536942 - MIR SINE MIR -201 61 2 237 237 10 62 chr3 24500221 24500318 -193536840 + Charlie7 DNA MER1_type 2516 2607 -5 191 258 240 73 chr3 24500499 24500774 -193536384 + L2 LINE L2 2991 3311 -2 253 368 8 8 chr3 24501049 24501166 -193535992 + MIR SINE MIR 29 145 -63 1859 137 25 11 chr3 24501653 24501938 -193535220 - AluJo SINE Alu -21 291 3 29 47 0 0 chr3 24501942 24501985 -193535173 + AT_rich Low_complexity Low_complexity 1 43 0 201 176 0 0 chr3 24502044 24502078 -193535080 + A-rich Low_complexity Low_complexity 1 34 0 2058 103 4 0 chr3 24502115 24502378 -193534780 - AluSx SINE Alu -21 291 28 339 315 63 0 chr3 24503695 24503822 -193533336 + L3b LINE CR1 1361 1495 -88 1036 304 59 17 chr3 24505527 24505988 -193531170 - L2 LINE L2 -2 3311 2832 908 239 167 61 chr3 24506717 24507160 -193529998 + MLT1G1 LTR MaLR 60 588 -6 712 324 81 29 chr3 24508130 24508675 -193528483 + L2 LINE L2 2694 3272 0 240 227 164 27 chr3 24508945 24509055 -193528103 - L2 LINE L2 -2 3311 3187 2644 33 7 0 chr3 24509448 24509749 -193527409 - AluY SINE Alu -8 303 1 337 273 148 68 chr3 24510125 24510403 -193526755 + MLT1H LTR MaLR 13 312 -237 379 198 51 3 chr3 24510479 24510586 -193526572 + MLT1H LTR MaLR 281 549 0 261 296 111 0 chr3 24510618 24510699 -193526459 - MIR SINE MIR -160 102 13 595 221 123 0 chr3 24511023 24511177 -193525981 + MIR SINE MIR 66 238 -24 1061 270 83 62 chr3 24511259 24511908 -193525250 + MLT2F LTR ERVL 1 663 0 210 71 0 0 chr3 24512860 24512888 -193524270 + (A)n Simple_repeat Simple_repeat 1 28 0 585 257 26 2 chr3 24513206 24513371 -193523787 + L1ME3A LINE L1 5640 5811 -379 2110 179 57 18 chr3 24513387 24513828 -193523330 - MLT1C LTR MaLR 0 467 10 501 269 58 6 chr3 24513836 24514007 -193523151 + L1ME3A LINE L1 5798 5977 -193 393 231 213 0 chr3 24514066 24514226 -193522932 + L1ME3A LINE L1 5962 6155 -15 423 180 129 43 chr3 24514230 24514369 -193522789 + MIR3 SINE MIR 23 173 -35 504 339 23 14 chr3 24514474 24514695 -193522463 + MIR SINE MIR 21 243 -19 2054 85 59 7 chr3 24515254 24515525 -193521633 + AluSp SINE Alu 1 285 -28 2335 88 3 10 chr3 24516056 24516361 -193520797 + AluSx SINE Alu 1 303 -9 345 314 111 5 chr3 24516973 24517183 -193519975 - MIR SINE MIR -6 256 18 193 211 105 0 chr3 24517199 24517256 -193519902 + L2 LINE L2 3209 3271 -1 590 301 5 16 chr3 24518211 24518321 -193518837 - MIR SINE MIR -2 260 151 1167 203 106 31 chr3 24518321 24518641 -193518517 + MER2 DNA MER2_type 1 344 0 590 301 5 16 chr3 24518641 24518723 -193518435 - MIR SINE MIR -111 151 70 388 200 42 42 chr3 24518810 24518930 -193518228 - MLT1L LTR MaLR 0 615 496 379 224 37 82 chr3 24519083 24519187 -193517971 - MLT1L LTR MaLR -337 278 180 1871 160 80 35 chr3 24519187 24519562 -193517596 + MSTD LTR MaLR 1 392 -4 379 224 37 82 chr3 24519562 24519591 -193517567 - MLT1L LTR MaLR -435 180 151 358 213 37 56 chr3 24519680 24519788 -193517370 + MIR SINE MIR 98 203 -59 1488 244 98 12 chr3 24520100 24520518 -193516640 - LTR16A1 LTR ERVL -1 456 3 307 221 0 15 chr3 24520532 24520600 -193516558 + LTR67 LTR ERVL 491 557 0 22 0 0 0 chr3 24521036 24521058 -193516100 + AT_rich Low_complexity Low_complexity 1 22 0 382 315 31 0 chr3 24522140 24522270 -193514888 + MIR SINE MIR 92 225 -37 358 254 46 46 chr3 24523229 24523359 -193513799 - MER94 DNA DNA -1 133 4 308 130 0 0 chr3 24523359 24523405 -193513753 - LTR16C LTR ERVL 0 491 446 6889 141 23 5 chr3 24523468 24523962 -193513196 + Tigger3b DNA MER2_type 110 594 -2434 2002 116 48 61 chr3 24523962 24524340 -193512818 - THE1C LTR MaLR -2 373 1 6889 141 23 5 chr3 24524340 24524947 -193512211 + Tigger3b DNA MER2_type 594 1231 0 1111 289 79 38 chr3 24524947 24525365 -193511793 - LTR16C LTR ERVL -56 435 1 5984 87 33 0 chr3 24525961 24526799 -193510359 + L1PA13 LINE L1 5284 6149 -14 328 251 66 71 chr3 24526918 24527101 -193510057 - MLT1K LTR MaLR -5 583 402 259 274 50 37 chr3 24527826 24527985 -193509173 + MIR SINE MIR 19 183 -64 700 278 117 40 chr3 24528683 24529007 -193508151 - MLT1J2 LTR MaLR 0 450 102 6280 79 38 0 chr3 24529110 24529906 -193507252 + LTR12 LTR ERV1 1 826 0 437 256 89 1 chr3 24529913 24530040 -193507118 - MIR SINE MIR -67 141 6 1187 269 153 56 chr3 24530715 24531276 -193505882 - MLT1G1 LTR MaLR -2 588 1 450 290 55 0 chr3 24531353 24531498 -193505660 - MIR SINE MIR -64 198 46 2177 105 14 24 chr3 24531950 24532271 -193504887 - AluSg SINE Alu 0 310 1 255 188 21 0 chr3 24532272 24532320 -193504838 + MER94 DNA DNA 27 75 -59 577 190 9 9 chr3 24532337 24532453 -193504705 + L1ME3 LINE L1 6039 6154 -8 344 243 0 0 chr3 24532478 24532552 -193504606 + MER94 DNA DNA 61 134 0 2323 112 18 68 chr3 24532792 24533175 -193503983 - THE1B LTR MaLR 0 364 1 7524 91 243 37 chr3 24533175 24534485 -193502673 - THE1B-int LTR MaLR 0 1580 1 1221 121 25 3 chr3 24534485 24534764 -193502394 - THE1B LTR MaLR 0 364 2 214 290 0 14 chr3 24534767 24534836 -193502322 + (TGG)n Simple_repeat Simple_repeat 3 70 0 912 198 6 0 chr3 24534850 24535007 -193502151 - FRAM SINE Alu -22 154 1 250 155 10 52 chr3 24535077 24535174 -193501984 + (TGG)n Simple_repeat Simple_repeat 2 94 0 291 153 24 12 chr3 24535235 24535320 -193501838 + (TGG)n Simple_repeat Simple_repeat 3 88 0 351 305 23 15 chr3 24535872 24536003 -193501155 - MIR SINE MIR -23 239 108 1834 158 13 13 chr3 24536149 24536460 -193500698 - AluJb SINE Alu -1 311 1 6276 94 36 0 chr3 24536466 24537563 -193499595 - L1PA13 LINE L1 0 6163 5054 194 203 186 0 chr3 24539248 24539307 -193497851 - L2 LINE L2 0 3272 3203 262 189 19 0 chr3 24539332 24539385 -193497773 - MIR SINE MIR -101 161 108 187 311 39 39 chr3 24539411 24539514 -193497644 - L2 LINE L2 -93 3220 3118 1439 314 126 34 chr3 24539856 24541154 -193496004 - L2 LINE L2 -1764 1550 133 214 333 35 0 chr3 24542546 24542633 -193494525 - MIR SINE MIR -71 191 102 369 111 16 0 chr3 24542827 24542890 -193494268 + L1PA16 LINE L1 6103 6166 0 705 270 54 35 chr3 24543153 24543468 -193493690 - L1MC4a LINE L1 -1965 5843 5523 252 301 142 43 chr3 24543477 24543759 -193493399 - L1P LINE L1 -2311 3835 3526 599 323 99 39 chr3 24543786 24544550 -193492608 - L1MC4a LINE L1 -2660 3486 2677 253 242 0 30 chr3 24544702 24544768 -193492390 + GA-rich Low_complexity Low_complexity 6 69 0 314 198 20 69 chr3 24545544 24545645 -193491513 + HsTC2 DNA Tc2 19 1832 -66 629 211 105 23 chr3 24545652 24545823 -193491335 + HsTC2 DNA Tc2 1265 1449 -449 1554 260 67 33 chr3 24545823 24546242 -193490916 - LTR16A LTR ERVL 0 450 18 1347 215 34 20 chr3 24546258 24546607 -193490551 + HsTC2 DNA Tc2 1444 1797 -101 243 182 0 73 chr3 24546614 24546669 -193490489 - HsTC2 DNA Tc2 -567 1331 1281 371 252 93 29 chr3 24546670 24546809 -193490349 - HsTC2 DNA Tc2 -1750 148 1 1619 223 45 19 chr3 24546872 24547310 -193489848 - L1ME3A LINE L1 -5 6165 5717 254 217 150 0 chr3 24547310 24547370 -193489788 + Tigger2 DNA MER2_type 2 70 -2648 * 2446 140 69 9 chr3 24547357 24547778 -193489380 + Tigger2 DNA MER2_type 2273 2718 0 1782 178 68 11 chr3 24547795 24548149 -193489009 - MLT1A2 LTR MaLR 0 374 1 559 268 13 19 chr3 24548168 24548325 -193488833 - L1ME3A LINE L1 -512 5658 5503 898 315 74 30 chr3 24548406 24548878 -193488280 - LTR16B LTR ERVL 0 464 1 1914 321 62 47 chr3 24549306 24550859 -193486299 - HERV16 LTR ERVL -477 5008 3134 627 227 220 86 chr3 24551333 24551820 -193485338 + MLT1H1 LTR MaLR 1 505 0 1218 259 51 45 chr3 24552497 24553144 -193484014 - L2 LINE L2 -5 3308 2656 2182 88 20 39 chr3 24553144 24553449 -193483709 + AluSg SINE Alu 1 299 -11 1218 259 51 45 chr3 24553449 24553521 -193483637 - L2 LINE L2 -657 2656 2586 201 331 66 16 chr3 24554437 24554558 -193482600 - L2 LINE L2 -5 3308 3182 3573 190 90 11 chr3 24554728 24555542 -193481616 + MER63C DNA MER1_type 53 930 0 966 82 0 70 chr3 24555555 24555713 -193481445 + L1PA15 LINE L1 6014 6160 -5 1763 182 162 43 chr3 24556532 24557021 -193480137 + LTR10A LTR ERV1 1 547 -62 546 255 71 64 chr3 24557021 24557303 -193479855 + LTR10A-int LTR ERV1 6 289 -6360 27678 218 15 25 chr3 24557361 24564726 -193472432 + LTR10A-int LTR ERV1 501 6649 0 1932 171 90 84 chr3 24564726 24565271 -193471887 + LTR10A LTR ERV1 1 548 -61 2188 136 3 3 chr3 24565392 24565702 -193471456 + AluSx SINE Alu 1 310 -2 551 252 14 7 chr3 24566363 24566506 -193470652 - MIR SINE MIR 0 262 119 1127 179 13 79 chr3 24566705 24567023 -193470135 + L1M4 LINE L1 4838 5134 -1012 1632 165 10 3 chr3 24567023 24567314 -193469844 + L1MC1 LINE L1 6040 6332 -1 585 252 18 0 chr3 24568278 24568478 -193468680 - L1ME3A LINE L1 -197 5973 5769 392 180 0 11 chr3 24568660 24568749 -193468409 + CT-rich Low_complexity Low_complexity 3 90 0 808 188 0 0 chr3 24568749 24568882 -193468276 - FLAM_A SINE Alu 0 133 1 324 0 0 0 chr3 24569467 24569503 -193467655 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1447 181 14 55 chr3 24569507 24569664 -193467494 - AluJo SINE Alu -31 281 119 183 80 0 0 chr3 24569664 24569689 -193467469 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5452 114 19 27 chr3 24569695 24571532 -193465626 - L1PA16 LINE L1 -10 6156 4303 1447 181 14 55 chr3 24571532 24571660 -193465498 - AluJo SINE Alu -198 114 1 2108 125 0 22 chr3 24571671 24571990 -193465168 - AluSx SINE Alu 0 312 1 771 226 23 95 chr3 24572244 24572388 -193464770 - MLT1H LTR MaLR -243 306 194 2147 197 18 83 chr3 24572388 24572941 -193464217 + LTR40a LTR ERVL 1 517 -2 771 226 23 95 chr3 24572941 24573102 -193464056 - MLT1H LTR MaLR -355 194 23 1396 218 32 50 chr3 24573695 24574072 -193463086 + L1MB7 LINE L1 17 386 -6156 1355 186 17 24 chr3 24574077 24574330 -193462828 + L1MB7 LINE L1 5206 5458 -1186 1926 121 51 75 chr3 24574330 24574527 -193462631 + THE1B LTR MaLR 1 186 -178 2277 121 0 3 chr3 24574527 24574841 -193462317 - AluSq SINE Alu 0 313 1 1926 121 51 75 chr3 24574841 24575016 -193462142 + THE1B LTR MaLR 186 364 0 1355 186 17 24 chr3 24575016 24575058 -193462100 + L1MB7 LINE L1 5458 5499 -1145 3639 179 46 35 chr3 24575061 24575909 -193461249 + L1MB7 LINE L1 5818 6674 -8 219 267 30 8 chr3 24576915 24577046 -193460112 + (TA)n Simple_repeat Simple_repeat 2 135 0 264 178 0 0 chr3 24577361 24577406 -193459752 + MLT1H LTR MaLR 489 533 -16 1697 153 3 28 chr3 24578279 24578585 -193458573 - AluJo SINE Alu 0 308 10 764 283 22 5 chr3 24579334 24579518 -193457640 - MIR SINE MIR -73 189 3 2673 153 40 9 chr3 24579533 24579984 -193457174 + MLT1C LTR MaLR 1 465 -2 1957 111 62 108 chr3 24580161 24580631 -193456527 - LTR7 LTR ERV1 -2 448 1 201 108 0 0 chr3 24580986 24581023 -193456135 + (A)n Simple_repeat Simple_repeat 1 37 0 282 209 15 0 chr3 24581064 24581131 -193456027 - LTR16C LTR ERVL -4 487 420 844 242 98 49 chr3 24581367 24581694 -193455464 - LTR16C LTR ERVL -79 412 70 245 239 34 23 chr3 24582911 24582999 -193454159 + MLT1J LTR MaLR 398 486 -25 442 250 6 76 chr3 24583314 24583486 -193453672 - MLT1J1 LTR MaLR -3 443 284 2024 193 51 0 chr3 24583623 24584037 -193453121 + L1MC1 LINE L1 43 477 -5949 5218 57 3 13 chr3 24584047 24584682 -193452476 + SVA Other Other 758 1386 0 3513 132 56 0 chr3 24584938 24585544 -193451614 + L1MC1 LINE L1 493 1132 -5294 4501 240 65 26 chr3 24585547 24585888 -193451270 + L1MC1 LINE L1 1225 1551 -4875 189 0 0 0 chr3 24585888 24585909 -193451249 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4501 240 65 26 chr3 24585909 24586899 -193450259 + L1MC1 LINE L1 1551 2501 -3925 2224 97 0 32 chr3 24586899 24587208 -193449950 + AluY SINE Alu 1 299 -12 4501 240 65 26 chr3 24587208 24588032 -193449126 + L1MC1 LINE L1 2501 3291 -3135 1617 174 89 0 chr3 24588032 24588314 -193448844 + AluJo SINE Alu 1 307 -5 4501 240 65 26 chr3 24588314 24589391 -193447767 + L1MC1 LINE L1 3291 4716 -1710 1702 135 27 61 chr3 24589391 24589848 -193447310 - Tigger5 DNA MER2_type 0 2323 8 2244 189 4 0 chr3 24589876 24590348 -193446810 + L1MC1 LINE L1 4737 5210 -1216 523 223 32 37 chr3 24590349 24590537 -193446621 + L1MC1 LINE L1 5323 5509 -917 1132 183 0 0 chr3 24590657 24590843 -193446315 + AluJb SINE Alu 115 300 -12 5486 138 33 13 chr3 24590844 24591273 -193445885 + L1MC1 LINE L1 5588 6007 -606 2291 113 30 30 chr3 24591273 24591637 -193445521 + THE1B LTR MaLR 1 364 0 12190 78 6 1 chr3 24591637 24593206 -193443952 + THE1B-int LTR MaLR 1 1578 -2 2251 127 30 22 chr3 24593208 24593569 -193443589 + THE1B LTR MaLR 1 364 0 5486 138 33 13 chr3 24593569 24594122 -193443036 + L1MC1 LINE L1 6007 6594 -19 1338 121 16 0 chr3 24594435 24594625 -193442533 - AluSq SINE Alu -8 305 113 8620 180 37 17 chr3 24594636 24595788 -193441370 + L1P4 LINE L1 3240 4367 -1799 189 0 0 0 chr3 24595788 24595809 -193441349 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 8620 180 37 17 chr3 24595809 24596885 -193440273 + L1P4 LINE L1 4367 5505 -661 1983 219 68 11 chr3 24598184 24598756 -193438402 + L1ME3A LINE L1 5564 6168 -2 609 241 163 0 chr3 24599236 24599377 -193437781 - MER5A DNA MER1_type 0 189 26 24 0 0 0 chr3 24599434 24599458 -193437700 + AT_rich Low_complexity Low_complexity 1 24 0 2240 117 0 0 chr3 24599479 24599779 -193437379 + AluSx SINE Alu 1 300 -12 23 33 0 0 chr3 24599784 24599814 -193437344 + AT_rich Low_complexity Low_complexity 1 30 0 3610 123 9 16 chr3 24599814 24600213 -193436945 - L1MB3 LINE L1 -4 6179 5784 1805 148 44 44 chr3 24600213 24600578 -193436580 + MLT1A1 LTR MaLR 1 365 0 3610 123 9 16 chr3 24600578 24600755 -193436403 - L1MB3 LINE L1 -399 5784 5607 716 211 155 92 chr3 24600853 24601312 -193435846 + MLT1G1 LTR MaLR 108 595 0 348 125 11 91 chr3 24651348 24651436 -193385722 + LTR37B LTR ERV1 384 464 -4 2243 92 0 0 chr3 24651612 24651915 -193385243 + AluSx SINE Alu 1 303 -9 252 275 96 6 chr3 24651929 24652107 -193385051 + L1ME LINE L1 5704 5897 -224 1780 181 23 20 chr3 24652918 24653267 -193383891 + MLT1B LTR MaLR 41 390 0 629 291 35 6 chr3 24653752 24653924 -193383234 - MIR3 SINE MIR 0 208 32 1322 172 66 3 chr3 24654018 24654320 -193382838 - MER33 DNA MER1_type -2 322 2 692 218 93 79 chr3 24654599 24654815 -193382343 + MIR SINE MIR 23 241 -21 605 182 56 5 chr3 24655079 24655219 -193381939 - MLT1G LTR MaLR -1 571 429 299 316 20 10 chr3 24655235 24655333 -193381825 - MIR SINE MIR -161 101 3 1050 242 35 38 chr3 24655340 24655424 -193381734 + MER46C DNA MER2_type 1 84 -254 1893 152 0 13 chr3 24655424 24655733 -193381425 + AluSx SINE Alu 1 305 -7 1050 242 35 38 chr3 24655733 24655987 -193381171 + MER46C DNA MER2_type 84 338 0 493 286 51 10 chr3 24655987 24656178 -193380980 - MIR SINE MIR -5 257 59 1354 191 98 9 chr3 24657399 24657840 -193379318 - MER119 DNA MER1_type 0 583 6 2324 77 7 0 chr3 24659062 24659361 -193377797 + AluY SINE Alu 1 301 -10 505 300 177 9 chr3 24660192 24660412 -193376746 + MIR SINE MIR 4 260 -2 184 270 16 16 chr3 24660443 24660506 -193376652 - L2 LINE L2 -10 3262 3200 263 309 108 14 chr3 24661245 24661384 -193375774 - MIR3 SINE MIR -55 153 2 2151 110 7 0 chr3 24661518 24661817 -193375341 + AluSc SINE Alu 1 301 -8 361 333 8 8 chr3 24661854 24661980 -193375178 + L2 LINE L2 3187 3312 -1 992 134 0 0 chr3 24662031 24662173 -193374985 - MER50 LTR ERV1 -23 711 570 1387 148 0 4 chr3 24662174 24662403 -193374755 + AluJb SINE Alu 71 298 -14 3120 160 25 23 chr3 24662404 24662966 -193374192 - MER50 LTR ERV1 -163 571 9 191 188 21 21 chr3 24662974 24663022 -193374136 + MIR SINE MIR 65 112 -150 532 212 27 94 chr3 24664464 24664766 -193372392 - MLT1H LTR MaLR -56 493 172 2631 183 118 11 chr3 24664775 24665316 -193371842 - MER77 LTR ERV1 -6 599 1 336 213 220 21 chr3 24665316 24665452 -193371706 - MLT1H LTR MaLR -373 176 13 198 310 76 57 chr3 24665523 24665681 -193371477 + L2 LINE L2 2919 3079 -193 528 146 9 27 chr3 24666839 24666949 -193370209 - L1MA3 LINE L1 0 6305 6198 512 248 159 13 chr3 24667283 24667440 -193369718 - MER5A DNA MER1_type -1 188 9 317 188 47 16 chr3 24667459 24667523 -193369635 - MER5B DNA MER1_type 0 178 113 895 182 62 0 chr3 24667556 24667732 -193369426 + MER5A DNA MER1_type 3 189 0 288 230 10 100 chr3 24667742 24667842 -193369316 + L1MC4 LINE L1 7413 7503 -539 367 293 89 73 chr3 24667843 24668034 -193369124 + L1MC4 LINE L1 7764 7957 -85 283 330 36 0 chr3 24668085 24668197 -193368961 + MER5A DNA MER1_type 8 123 -66 734 244 45 98 chr3 24668272 24668628 -193368530 - MER102b DNA MER1_type -4 337 1 306 320 48 8 chr3 24669128 24669253 -193367905 + MIR3 SINE MIR 41 170 -38 2143 99 0 7 chr3 24669892 24670194 -193366964 + AluSc SINE Alu 1 300 -9 502 241 30 0 chr3 24670397 24670530 -193366628 + L1MC5 LINE L1 7789 7925 -36 1069 125 12 0 chr3 24671205 24671365 -193365793 + AluSg/x SINE Alu 138 299 -13 510 301 0 14 chr3 24671807 24671953 -193365205 - MIR3 SINE MIR -9 199 56 378 206 69 29 chr3 24672224 24672326 -193364832 - MER67A LTR ERV1 0 543 438 397 308 30 23 chr3 24672352 24672485 -193364673 - L2 LINE L2 -5 3267 3134 1679 267 117 9 chr3 24672555 24673087 -193364071 - MLT1G1 LTR MaLR 0 595 7 234 255 124 87 chr3 24673133 24673294 -193363864 - L2 LINE L2 -237 3035 2869 1215 218 102 95 chr3 24673421 24673933 -193363225 - MLT1G LTR MaLR -7 583 65 2033 100 14 3 chr3 24673933 24674222 -193362936 - AluSq SINE Alu -21 292 1 1215 218 102 95 chr3 24674222 24674279 -193362879 - MLT1G LTR MaLR -525 65 10 520 256 7 29 chr3 24674289 24674426 -193362732 + MER94 DNA DNA 1 134 0 387 239 0 62 chr3 24675674 24675687 -193361471 + MER81 DNA DNA 1 13 -101 1580 186 40 45 chr3 24675687 24675853 -193361305 + MLT1A2 LTR MaLR 1 166 -208 249 33 0 0 chr3 24675853 24675883 -193361275 + (TC)n Simple_repeat Simple_repeat 1 30 0 1580 186 40 45 chr3 24675883 24676092 -193361066 + MLT1A2 LTR MaLR 166 374 0 387 239 0 62 chr3 24676092 24676191 -193360967 + MER81 DNA DNA 13 106 -8 229 153 85 0 chr3 24676806 24676865 -193360293 + LTR37B LTR ERV1 5 68 -400 2332 82 0 0 chr3 24676994 24677298 -193359860 - AluY SINE Alu -7 304 1 384 225 0 0 chr3 24677363 24677443 -193359715 + LTR37B LTR ERV1 200 279 -189 489 318 92 5 chr3 24677544 24677761 -193359397 - L1ME LINE L1 -430 5740 5505 309 292 77 15 chr3 24677794 24677989 -193359169 - L1ME LINE L1 -1306 4840 4634 1803 159 37 57 chr3 24677995 24678378 -193358780 - THE1C LTR MaLR 0 375 1 304 253 163 0 chr3 24678428 24678594 -193358564 - L1ME LINE L1 -1562 4584 4392 * 683 342 48 12 chr3 24678592 24679007 -193358151 + L1MC4a LINE L1 5434 5863 -1945 * 721 220 12 0 chr3 24679005 24679178 -193357980 - L1ME LINE L1 -3009 3137 2963 * 41647 66 7 2 chr3 24679175 24685300 -193351858 - L1PA6 LINE L1 0 6154 3 1268 232 13 3 chr3 24685301 24685616 -193351542 - L1ME LINE L1 -3169 2977 2660 220 256 0 0 chr3 24685813 24685856 -193351302 + polypyrimidine Low_complexity Low_complexity 1 43 0 368 290 11 0 chr3 24686534 24686627 -193350531 + L2 LINE L2 3178 3271 -1 288 137 0 0 chr3 24686874 24686925 -193350233 + (CA)n Simple_repeat Simple_repeat 1 51 0 833 274 52 110 chr3 24688254 24688699 -193348459 - LTR16C LTR ERVL 0 491 73 453 288 18 0 chr3 24689602 24689713 -193347445 - MER5A DNA MER1_type -5 184 72 2372 108 33 28 chr3 24689737 24690097 -193347061 + THE1B LTR MaLR 1 362 -2 196 278 139 14 chr3 24690500 24690572 -193346586 - L2 LINE L2 -2 3270 3190 2571 155 19 19 chr3 24690623 24691055 -193346103 - MSTB1 LTR MaLR 0 432 1 189 207 230 35 chr3 24692310 24692397 -193344761 + L2 LINE L2 3199 3302 -11 2015 188 30 37 chr3 24692399 24692642 -193344516 + L1ME2 LINE L1 5727 5970 -194 1115 201 52 101 chr3 24692642 24692796 -193344362 + MLT1A2 LTR MaLR 4 164 -210 2076 105 0 3 chr3 24692796 24693107 -193344051 + AluSc SINE Alu 1 309 0 1115 201 52 101 chr3 24693107 24693340 -193343818 + MLT1A2 LTR MaLR 164 372 -2 2015 188 30 37 chr3 24693340 24693352 -193343806 + L1ME2 LINE L1 5970 5981 -183 1688 153 28 92 chr3 24693352 24693752 -193343406 - MLT1A2 LTR MaLR 0 374 1 2015 188 30 37 chr3 24693752 24693927 -193343231 + L1ME2 LINE L1 5981 6155 -9 383 297 18 9 chr3 24694739 24694850 -193342308 - MER117 DNA MER1_type -1 196 85 * 1886 183 67 31 chr3 24694847 24695198 -193341960 - MER63B DNA MER1_type -626 436 66 3259 95 44 23 chr3 24695198 24695680 -193341478 - LTR22B LTR ERVK 0 492 1 1886 183 67 31 chr3 24695680 24695749 -193341409 - MER63B DNA MER1_type -996 66 1 324 190 0 35 chr3 24695945 24696003 -193341155 + MER91 DNA MER1_type 141 196 0 837 200 53 6 chr3 24696733 24696903 -193340255 - MER45A DNA AcHobo 0 178 1 180 97 0 0 chr3 24697370 24697401 -193339757 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 484 216 108 0 chr3 24697415 24697517 -193339641 - MER81 DNA DNA -1 113 1 257 178 0 0 chr3 24697803 24697848 -193339310 + MER5B DNA MER1_type 1 45 -133 569 274 0 0 chr3 24698078 24698195 -193338963 - FLAM_A SINE Alu -14 128 12 446 281 111 7 chr3 24699384 24699519 -193337639 - MIR3 SINE MIR -10 198 50 243 261 0 0 chr3 24700686 24700732 -193336426 + L2 LINE L2 3247 3292 -21 258 301 14 0 chr3 24700754 24700827 -193336331 + L2 LINE L2 3240 3313 0 232 337 39 67 chr3 24700879 24701057 -193336101 - L3 LINE CR1 -93 1484 1312 2372 31 41 0 chr3 24701083 24701377 -193335781 - AluY SINE Alu -5 306 1 411 232 12 0 chr3 24701673 24701755 -193335403 + MLT2F LTR ERVL 5 87 -576 2223 108 156 3 chr3 24702217 24702588 -193334570 + MSTA LTR MaLR 1 428 0 2121 243 24 11 chr3 24702659 24703085 -193334073 + MLT2F LTR ERVL 186 620 -43 933 7 50 14 chr3 24703085 24703226 -193333932 + (TCTA)n Simple_repeat Simple_repeat 3 148 0 2121 243 24 11 chr3 24703226 24703264 -193333894 + MLT2F LTR ERVL 620 656 -7 1227 235 48 24 chr3 24703803 24704135 -193333023 + MER102b DNA MER1_type 2 341 0 1254 268 93 15 chr3 24704146 24704556 -193332602 + LTR16C LTR ERVL 1 442 -49 3325 227 3 3 chr3 24704578 24705216 -193331942 + MER82 DNA MER2_type 16 653 0 2179 185 29 14 chr3 24705317 24706345 -193330813 + L1MEc LINE L1 91 1180 -5216 2463 63 0 0 chr3 24706621 24706921 -193330237 + AluY SINE Alu 1 300 -11 1579 177 75 0 chr3 24706927 24707044 -193330114 - L1MA9 LINE L1 -22 6290 6183 231 114 0 0 chr3 24707044 24707079 -193330079 + (TG)n Simple_repeat Simple_repeat 2 36 0 1579 177 75 0 chr3 24707079 24707295 -193329863 - L1MA9 LINE L1 -129 6183 5932 715 197 0 0 chr3 24707518 24707640 -193329518 - FLAM_C SINE Alu -18 125 4 1065 189 41 49 chr3 24707722 24707965 -193329193 - MSTD LTR MaLR 0 396 156 1057 227 54 14 chr3 24708072 24708350 -193328808 - MLT1C LTR MaLR -178 289 1 527 327 63 15 chr3 24708495 24708764 -193328394 - L2 LINE L2 -61 3252 2971 241 314 114 29 chr3 24708769 24708909 -193328249 - L2 LINE L2 -308 3005 2854 2339 273 103 23 chr3 24709463 24710579 -193326579 + L2 LINE L2 2103 3312 -1 193 286 13 39 chr3 24710674 24710751 -193326407 - MIR3 SINE MIR -30 178 104 757 189 25 44 chr3 24712185 24712344 -193324814 + MER5A DNA MER1_type 2 157 -32 572 276 78 58 chr3 24712574 24712817 -193324341 - MIR SINE MIR -11 251 4 428 232 101 0 chr3 24713232 24713331 -193323827 + MER96 DNA MER1_type? 55 163 -12 217 338 13 13 chr3 24713486 24713563 -193323595 + L2 LINE L2 3122 3198 -74 266 276 49 18 chr3 24713727 24713890 -193323268 + (TG)n Simple_repeat Simple_repeat 2 169 0 356 218 34 50 chr3 24714319 24714498 -193322660 + (TG)n Simple_repeat Simple_repeat 2 177 0 236 231 9 56 chr3 24714478 24714586 -193322572 + (TATG)n Simple_repeat Simple_repeat 3 105 0 * 327 233 31 43 chr3 24714532 24714695 -193322463 + (TG)n Simple_repeat Simple_repeat 1 161 0 472 204 9 37 chr3 24714724 24714832 -193322326 - MER81 DNA DNA -1 113 9 626 262 228 5 chr3 24715534 24715766 -193321392 - MIR SINE MIR 0 262 1 341 361 65 34 chr3 24715819 24716109 -193321049 + L1ME2 LINE L1 5654 5956 -206 790 186 40 40 chr3 24716463 24716640 -193320518 - MER5A DNA MER1_type -12 177 1 376 312 159 25 chr3 24716680 24716837 -193320321 - MER5A DNA MER1_type 0 189 12 225 329 128 34 chr3 24716863 24717012 -193320146 - MER5A DNA MER1_type -6 183 21 650 177 88 7 chr3 24717267 24717414 -193319744 + MIR SINE MIR 47 205 -57 184 247 169 22 chr3 24717554 24717643 -193319515 + L3b LINE CR1 1378 1479 -104 * 709 262 14 0 chr3 24717597 24717738 -193319420 - MER5B DNA MER1_type -21 157 15 408 238 322 7 chr3 24718522 24718665 -193318493 + MER5A DNA MER1_type 1 188 -1 288 265 309 0 chr3 24718672 24718808 -193318350 + MER5B DNA MER1_type 1 178 0 531 172 2 2 chr3 24719084 24719185 -193317973 + MER5A DNA MER1_type 9 98 -80 365 266 6 79 chr3 24720784 24720961 -193316197 + L2 LINE L2 2883 3046 -226 884 249 151 53 chr3 24721027 24721464 -193315694 - LTR16C LTR ERVL 0 491 12 256 156 22 0 chr3 24721501 24721546 -193315612 + L2 LINE L2 3262 3307 -6 476 32 16 0 chr3 24722126 24722188 -193314970 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 368 287 21 0 chr3 24722200 24722296 -193314862 + MIR SINE MIR 67 165 -43 5044 156 29 9 chr3 24722350 24723358 -193313800 + L1MB7 LINE L1 5156 6183 -1 2086 96 3 7 chr3 24723372 24723663 -193313495 + AluSg SINE Alu 1 290 -20 1000 275 110 43 chr3 24723663 24724125 -193313033 - MLT1H LTR MaLR -42 507 15 234 264 8 74 chr3 24724128 24724249 -193312909 + MIR SINE MIR 149 261 -1 320 236 55 36 chr3 24724315 24724425 -193312733 - MIR3 SINE MIR -9 199 88 615 238 35 17 chr3 24724679 24724851 -193312307 + Charlie8 DNA MER1_type 8 182 -2235 250 254 70 0 chr3 24725683 24725754 -193311404 - MER91C DNA MER1_type -35 105 30 286 266 266 8 chr3 24725930 24726054 -193311104 - MIR SINE MIR 0 262 107 294 214 167 12 chr3 24726087 24726171 -193310987 - MIR SINE MIR 0 262 166 186 180 0 80 chr3 24726142 24726192 -193310966 - MIR3 SINE MIR -43 165 120 * 246 123 175 0 chr3 24726316 24726373 -193310785 - MIR SINE MIR -147 115 49 2556 42 0 0 chr3 24726746 24727056 -193310102 + AluY SINE Alu 1 310 -1 548 244 81 47 chr3 24727757 24727929 -193309229 - MIR SINE MIR -22 240 63 238 258 135 11 chr3 24728122 24728211 -193308947 - MIR SINE MIR -12 250 151 474 353 59 23 chr3 24728351 24728572 -193308586 - MIR SINE MIR -29 233 5 458 250 112 0 chr3 24729352 24729504 -193307654 + L1MD3 LINE L1 7816 7984 -11 464 303 51 11 chr3 24730490 24730665 -193306493 + MIR SINE MIR 62 243 -19 1338 83 19 10 chr3 24730708 24730913 -193306245 - L1P LINE L1 -777 5369 5163 3566 92 11 0 chr3 24730913 24731390 -193305768 + L1PA10 LINE L1 5686 6167 -1 237 297 54 27 chr3 24731412 24731486 -193305672 - L2 LINE L2 -34 3279 3204 1011 132 52 11 chr3 24731645 24731819 -193305339 + MER5A DNA MER1_type 1 181 -8 189 146 0 83 chr3 24731821 24731869 -193305289 - MIR SINE MIR -93 169 126 373 281 25 75 chr3 24732403 24732602 -193304556 - LTR16A1 LTR ERVL 0 457 269 309 287 49 35 chr3 24732747 24732890 -193304268 - MIR3 SINE MIR -45 163 19 984 144 55 11 chr3 24732963 24733144 -193304014 - MER5A DNA MER1_type 0 189 1 253 289 36 12 chr3 24733889 24733972 -193303186 - MIR SINE MIR -71 191 107 201 276 35 0 chr3 24734277 24734335 -193302823 - L3b LINE CR1 -183 1400 1341 623 265 71 60 chr3 24734431 24734714 -193302444 - MLT1J LTR MaLR -2 509 224 382 298 32 32 chr3 24735368 24735492 -193301666 - L2 LINE L2 -9 3263 3140 183 162 0 0 chr3 24735585 24735622 -193301536 + (CA)n Simple_repeat Simple_repeat 2 38 0 199 364 75 36 chr3 24735622 24735902 -193301256 + L2 LINE L2 1666 1956 -1358 1151 208 96 96 chr3 24735904 24736338 -193300820 - LTR16A1 LTR ERVL 0 457 21 2145 127 40 30 chr3 24736338 24736709 -193300449 - THE1C LTR MaLR 0 375 1 1151 208 96 96 chr3 24736709 24736731 -193300427 - LTR16A1 LTR ERVL -435 22 1 321 274 95 0 chr3 24737365 24737449 -193299709 - MIR3 SINE MIR -6 202 111 2454 58 0 0 chr3 24737560 24737870 -193299288 - AluY SINE Alu -1 310 1 2281 94 0 0 chr3 24738740 24739037 -193298121 + AluSx SINE Alu 1 297 -15 323 375 7 7 chr3 24739165 24739309 -193297849 - MIR3 SINE MIR -2 206 63 288 285 169 26 chr3 24739346 24739563 -193297595 - MIR SINE MIR -3 259 16 277 198 19 0 chr3 24739827 24739933 -193297225 + CT-rich Low_complexity Low_complexity 2 109 0 414 0 0 0 chr3 24739933 24739979 -193297179 + (CA)n Simple_repeat Simple_repeat 1 46 0 292 223 48 68 chr3 24740587 24740690 -193296468 - MER91B DNA MER1_type 0 190 90 463 352 0 0 chr3 24740708 24740836 -193296322 - MER91B DNA MER1_type -61 129 2 335 299 0 0 chr3 24741263 24741370 -193295788 + (TG)n Simple_repeat Simple_repeat 2 108 0 1556 165 14 20 chr3 24742484 24742781 -193294377 + AluJb SINE Alu 1 295 -17 2285 80 3 3 chr3 24742781 24743092 -193294066 + AluY SINE Alu 1 311 0 378 0 0 0 chr3 24743891 24743933 -193293225 + (A)n Simple_repeat Simple_repeat 1 42 0 2433 57 7 0 chr3 24744738 24745037 -193292121 - AluSc SINE Alu -8 301 1 25 0 0 0 chr3 24745238 24745263 -193291895 + AT_rich Low_complexity Low_complexity 1 25 0 366 42 0 0 chr3 24745513 24745561 -193291597 + (TG)n Simple_repeat Simple_repeat 2 49 0 532 224 218 13 chr3 24745679 24745835 -193291323 - MIR SINE MIR -28 234 47 338 286 0 0 chr3 24746047 24746131 -193291027 - LTR37A LTR ERV1 -335 91 8 261 250 0 0 chr3 24746671 24746779 -193290379 + CT-rich Low_complexity Low_complexity 1 108 0 269 267 0 0 chr3 24747476 24747536 -193289622 + L2 LINE L2 3208 3267 -5 699 282 41 5 chr3 24747540 24747735 -193289423 - MIR SINE MIR -3 259 58 679 226 116 6 chr3 24747744 24747925 -193289233 - MIR SINE MIR -30 232 32 183 200 100 20 chr3 24748592 24748642 -193288516 - MER5B DNA MER1_type -55 123 70 217 288 123 5 chr3 24748932 24749041 -193288117 - MIR3 SINE MIR -117 145 15 657 176 42 102 chr3 24749162 24749326 -193287832 + MER3 DNA MER1_type 6 157 -52 1394 149 73 44 chr3 24749326 24749637 -193287521 + AluJo SINE Alu 1 319 0 657 176 42 102 chr3 24749637 24749687 -193287471 + MER3 DNA MER1_type 157 208 -1 180 152 91 0 chr3 24750109 24750142 -193287016 - L3 LINE CR1 -10 1567 1532 * 320 178 11 111 chr3 24750114 24750204 -193286954 - MIR3 SINE MIR -22 186 106 276 229 92 46 chr3 24751420 24751551 -193285607 + MLT1I LTR MaLR 1 137 -272 351 239 62 92 chr3 24751679 24751809 -193285349 + MLT1H LTR MaLR 424 549 0 706 265 46 53 chr3 24752013 24752545 -193284613 + MLT2F LTR ERVL 13 655 -8 387 206 16 87 chr3 24752650 24752776 -193284382 - MIR SINE MIR -6 256 140 1487 274 55 22 chr3 24753450 24753903 -193283255 + MLT2E LTR ERVL 1 468 -160 2168 73 14 3 chr3 24754567 24754855 -193282303 + AluY SINE Alu 1 291 -20 707 175 96 24 chr3 24754901 24755067 -193282091 + MER5B DNA MER1_type 1 178 0 459 228 73 32 chr3 24755067 24755190 -193281968 - MER5A DNA MER1_type -5 184 57 1307 237 122 10 chr3 24755216 24755625 -193281533 + MSTB2 LTR MaLR 1 455 -2 285 316 211 5 chr3 24755973 24756163 -193280995 - MIR SINE MIR -21 241 13 210 330 155 0 chr3 24756781 24756884 -193280274 - MIR3 SINE MIR -45 163 45 1087 186 144 23 chr3 24756973 24757237 -193279921 - AluJo SINE Alu -5 297 2 24 0 0 0 chr3 24757987 24758011 -193279147 + AT_rich Low_complexity Low_complexity 1 24 0 661 288 51 19 chr3 24759792 24760007 -193277151 + L2 LINE L2 113 334 -2980 965 194 50 0 chr3 24760007 24760187 -193276971 + MER20 DNA MER1_type 24 212 -7 301 270 52 17 chr3 24760199 24760314 -193276844 + L2 LINE L2 372 490 -2824 538 258 171 33 chr3 24760315 24760590 -193276568 + L2 LINE L2 833 1145 -2169 3515 253 125 26 chr3 24760610 24761936 -193275222 + L2 LINE L2 1683 3132 -181 21 0 0 0 chr3 24762386 24762407 -193274751 + AT_rich Low_complexity Low_complexity 1 21 0 293 255 75 28 chr3 24764202 24764308 -193272850 - MIR SINE MIR -88 174 64 230 235 94 35 chr3 24764626 24764711 -193272447 + MIR3 SINE MIR 105 194 -14 1790 95 8 4 chr3 24764861 24765113 -193272045 + AluSg SINE Alu 54 306 -4 1020 279 137 29 chr3 24765584 24766350 -193270808 + L2 LINE L2 2455 3308 -5 27 0 0 0 chr3 24766639 24766666 -193270492 + AT_rich Low_complexity Low_complexity 1 27 0 2285 100 0 3 chr3 24766797 24767107 -193270051 - AluSq SINE Alu -2 311 3 557 244 97 17 chr3 24768018 24768194 -193268964 + L2 LINE L2 3122 3311 -2 1117 236 62 18 chr3 24768537 24768954 -193268204 - L1ME3A LINE L1 -2 6160 5701 2094 119 0 0 chr3 24769688 24769982 -193267176 - AluSx SINE Alu -18 294 1 587 271 197 5 chr3 24771392 24771580 -193265578 - MER58A DNA MER1_type 0 224 1 1737 166 16 29 chr3 24771853 24772166 -193264992 - AluJo SINE Alu -3 309 1 22 0 0 0 chr3 24772443 24772465 -193264693 + AT_rich Low_complexity Low_complexity 1 22 0 396 198 35 0 chr3 24772560 24772646 -193264512 + MER41E LTR ERV1 313 401 -111 23 33 0 0 chr3 24772685 24772715 -193264443 + AT_rich Low_complexity Low_complexity 1 30 0 224 245 91 39 chr3 24773105 24773239 -193263919 - MIR SINE MIR -29 179 33 1759 160 14 11 chr3 24773766 24774047 -193263111 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr3 24774052 24774074 -193263084 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 710 138 0 0 chr3 24774526 24774620 -193262538 + AluSg/x SINE Alu 197 290 -20 2248 95 6 16 chr3 24775387 24775702 -193261456 - AluSq SINE Alu -1 312 1 280 279 15 0 chr3 24776617 24776685 -193260473 - L2 LINE L2 -37 3276 3208 249 241 27 125 chr3 24776860 24776949 -193260209 - MIR SINE MIR -73 189 112 587 234 55 8 chr3 24776949 24777077 -193260081 - MER94 DNA DNA 0 134 1 249 241 27 125 chr3 24777077 24777099 -193260059 - MIR SINE MIR -150 112 89 1185 254 98 15 chr3 24778012 24778421 -193258737 - L2 LINE L2 -1146 2168 1726 486 238 273 6 chr3 24778465 24778637 -193258521 + MIR SINE MIR 45 262 0 292 230 168 6 chr3 24778658 24778819 -193258339 - L2 LINE L2 -1619 1695 1509 267 279 35 23 chr3 24778984 24779070 -193258088 + MIR3 SINE MIR 111 197 -11 1626 145 4 0 chr3 24779820 24780055 -193257103 + MER46A DNA MER2_type 1 236 0 1223 124 143 81 chr3 24780367 24780626 -193256532 - AluJb SINE Alu -5 307 33 258 222 19 0 chr3 24780922 24780976 -193256182 - L2 LINE L2 -1 3271 3217 207 0 0 0 chr3 24781295 24781318 -193255840 + (T)n Simple_repeat Simple_repeat 1 23 0 253 245 170 0 chr3 24781673 24781767 -193255391 + L2 LINE L2 3161 3270 -2 495 289 84 47 chr3 24781837 24782027 -193255131 + MIR SINE MIR 36 232 -30 1701 161 119 0 chr3 24782786 24783097 -193254061 - MER7A DNA MER2_type 0 346 1 1006 178 114 25 chr3 24783103 24783339 -193253819 - MIR SINE MIR -4 258 2 699 224 106 25 chr3 24784132 24784377 -193252781 - MER5C DNA MER1_type -1 323 59 202 265 0 88 chr3 24784493 24784561 -193252597 + L2 LINE L2 3205 3266 -6 219 340 52 15 chr3 24787444 24787577 -193249581 + MIR SINE MIR 31 149 -59 421 303 62 100 chr3 24788171 24788491 -193248667 + L2 LINE L2 2965 3272 0 6847 194 56 46 chr3 24789742 24790667 -193246491 - L1MB8 LINE L1 -14 6164 5250 2185 106 3 17 chr3 24790667 24790969 -193246189 - AluSx SINE Alu -14 298 1 6847 194 56 46 chr3 24790969 24792672 -193244486 - L1MB8 LINE L1 -928 5250 3505 2208 107 0 19 chr3 24792672 24792982 -193244176 - AluSq SINE Alu -9 304 1 6847 194 56 46 chr3 24792982 24793277 -193243881 - L1MB8 LINE L1 -2673 3505 3215 22 0 0 0 chr3 24793709 24793731 -193243427 + AT_rich Low_complexity Low_complexity 1 22 0 203 222 0 32 chr3 24794119 24794182 -193242976 + T-rich Low_complexity Low_complexity 3 63 0 3308 219 41 39 chr3 24794782 24796425 -193240733 + L1ME1 LINE L1 4474 6116 -50 229 329 114 25 chr3 24798423 24798581 -193238577 - MIR SINE MIR -71 191 20 1369 214 154 3 chr3 24798591 24799105 -193238053 - MER20B DNA MER1_type -1 782 136 409 179 0 0 chr3 24799142 24799209 -193237949 + MER63 DNA MER1_type 683 749 -313 636 216 15 8 chr3 24799285 24799419 -193237739 - MER20B DNA MER1_type -642 141 7 194 286 18 0 chr3 24802882 24802938 -193234220 + L2 LINE L2 3256 3312 -1 765 212 0 120 chr3 24804101 24804351 -193232807 + MIR SINE MIR 6 225 -37 211 247 321 0 chr3 24804436 24804517 -193232641 + L2 LINE L2 3197 3303 -10 563 244 73 69 chr3 24804681 24804955 -193232203 - L1MC5 LINE L1 -54 7907 7633 713 237 47 19 chr3 24805068 24805279 -193231879 - L1MC5 LINE L1 -474 7487 7271 270 116 0 0 chr3 24805387 24805430 -193231728 - L1MC4 LINE L1 -791 7251 7209 * 699 218 83 49 chr3 24805411 24805737 -193231421 - L1MC5 LINE L1 -733 7228 6892 1116 230 63 37 chr3 24805831 24806179 -193230979 - L2 LINE L2 -1258 2056 1700 730 137 85 92 chr3 24806193 24806380 -193230778 - L1MD3 LINE L1 -11 7984 7581 291 265 44 0 chr3 24806479 24806547 -193230611 - L2 LINE L2 -18 3254 3184 24 32 0 0 chr3 24807418 24807449 -193229709 + AT_rich Low_complexity Low_complexity 1 31 0 619 265 179 0 chr3 24807625 24807859 -193229299 - L1ME LINE L1 -335 5786 5511 357 316 111 32 chr3 24808130 24808320 -193228838 + MIR3 SINE MIR 2 206 -2 320 290 101 24 chr3 24808358 24808565 -193228593 + L3b LINE CR1 1219 1441 -142 2472 91 0 0 chr3 24809164 24809471 -193227687 + AluSp SINE Alu 1 307 -6 30 0 0 0 chr3 24809631 24809661 -193227497 + AT_rich Low_complexity Low_complexity 1 30 0 1735 96 18 0 chr3 24809661 24809880 -193227278 - AluSg/x SINE Alu -22 290 68 250 281 251 22 chr3 24810067 24810334 -193226824 + L2 LINE L2 2479 2806 -508 183 200 0 0 chr3 24810338 24810368 -193226790 + L2 LINE L2 3236 3265 -48 317 291 10 10 chr3 24811404 24811507 -193225651 - MLT1I LTR MaLR -4 405 303 1742 155 31 14 chr3 24811507 24811798 -193225360 - AluJo SINE Alu -16 296 1 270 204 112 41 chr3 24811838 24811936 -193225222 - MLT1J2 LTR MaLR -279 171 67 229 139 28 0 chr3 24811949 24811985 -193225173 - MLT1L LTR MaLR -578 37 1 441 281 111 23 chr3 24812023 24812240 -193224918 - MIR SINE MIR -20 242 7 723 208 25 0 chr3 24812861 24813020 -193224138 + MER5B DNA MER1_type 1 163 -15 2298 97 3 0 chr3 24813572 24813870 -193223288 - AluSx SINE Alu -13 299 1 546 220 239 8 chr3 24816233 24816501 -193220657 + LTR16A LTR ERVL 120 449 -1 365 250 129 0 chr3 24817809 24817925 -193219233 + MIR SINE MIR 49 179 -83 358 192 77 0 chr3 24817918 24817996 -193219162 - MER91C DNA MER1_type -30 110 27 * 210 184 0 0 chr3 24818893 24818931 -193218227 - L2 LINE L2 0 3313 3276 383 316 44 44 chr3 24819192 24819417 -193217741 - L2 LINE L2 -436 2878 2654 4885 133 43 23 chr3 24822602 24823102 -193214056 - L1MA7 LINE L1 0 6291 5765 351 0 0 0 chr3 24823102 24823141 -193214017 + (TG)n Simple_repeat Simple_repeat 2 40 0 4885 133 43 23 chr3 24823141 24823499 -193213659 - L1MA7 LINE L1 -526 5765 5416 252 343 96 12 chr3 24823573 24823739 -193213419 - MIR SINE MIR -6 256 77 397 299 24 16 chr3 24823956 24824083 -193213075 - MIR3 SINE MIR -78 130 3 516 243 50 29 chr3 24824426 24824566 -193212592 + MIR SINE MIR 29 171 -91 524 214 28 93 chr3 24824749 24824931 -193212227 + MIR SINE MIR 76 245 -17 315 218 11 58 chr3 24825130 24825217 -193211941 + MIR SINE MIR 180 262 0 2316 74 0 10 chr3 24825933 24826242 -193210916 + AluY SINE Alu 1 306 -5 212 248 56 106 chr3 24826534 24826695 -193210463 - L2 LINE L2 -86 3186 3034 1013 144 22 11 chr3 24827058 24827238 -193209920 + MER5A DNA MER1_type 5 186 -3 21 0 0 0 chr3 24827351 24827372 -193209786 + AT_rich Low_complexity Low_complexity 1 21 0 279 315 19 19 chr3 24827406 24827426 -193209732 + GA-rich Low_complexity Low_complexity 4 23 -88 1504 189 120 17 chr3 24827426 24827785 -193209373 + MSTD LTR MaLR 1 396 0 279 315 19 19 chr3 24827785 24827872 -193209286 + GA-rich Low_complexity Low_complexity 22 111 0 785 303 97 42 chr3 24829722 24830178 -193206980 - HAL1 LINE L1 -182 2325 1845 1754 265 87 25 chr3 24830212 24830933 -193206225 - HAL1 LINE L1 -762 1745 980 304 229 35 123 chr3 24831157 24831291 -193205867 - HAL1 LINE L1 -2291 216 72 186 43 0 0 chr3 24831291 24831314 -193205844 + (CCTA)n Simple_repeat Simple_repeat 4 26 0 2903 208 74 7 chr3 24831314 24831925 -193205233 + MER82 DNA MER2_type 2 653 0 304 229 35 123 chr3 24831925 24832016 -193205142 - HAL1 LINE L1 -2433 74 10 1602 247 65 41 chr3 24832185 24832339 -193204819 + L1MC/D LINE L1 5270 5419 -2389 2311 84 0 0 chr3 24832339 24832649 -193204509 + AluY SINE Alu 1 310 -1 1602 247 65 41 chr3 24832649 24833005 -193204153 + L1MC/D LINE L1 5419 5792 -2016 204 269 81 111 chr3 24833040 24833155 -193204003 - L2 LINE L2 -906 2408 2291 2543 169 61 4 chr3 24833155 24833633 -193203525 + MLT1D LTR MaLR 1 505 0 204 269 81 111 chr3 24833633 24833814 -193203344 - L2 LINE L2 -1023 2291 2121 2418 81 39 39 chr3 24833868 24834250 -193202908 + L1PA11 LINE L1 5792 6173 -1 23 0 0 0 chr3 24835113 24835136 -193202022 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 24835306 24835334 -193201824 + AT_rich Low_complexity Low_complexity 1 28 0 1198 225 25 7 chr3 24835344 24835629 -193201529 + MLT1H LTR MaLR 9 298 -251 322 213 0 0 chr3 24835766 24835827 -193201331 + MLT1H LTR MaLR 486 546 -3 2396 72 0 0 chr3 24835917 24836222 -193200936 + AluSc SINE Alu 1 305 -4 380 301 135 6 chr3 24838152 24838308 -193198850 + L2 LINE L2 3138 3313 0 930 266 137 49 chr3 24838582 24839048 -193198110 + MLT1H LTR MaLR 41 547 -2 3834 137 36 15 chr3 24839275 24840016 -193197142 + L1MC1 LINE L1 5157 6324 -9 415 137 27 0 chr3 24840016 24840083 -193197075 + L1MC1 LINE L1 6254 6328 -5 275 287 108 44 chr3 24840124 24840481 -193196677 + L1ME4a LINE L1 5709 6094 -27 3044 148 49 12 chr3 24840481 24841057 -193196101 - L1MB8 LINE L1 0 6178 5582 275 287 108 44 chr3 24841057 24841086 -193196072 + L1ME4a LINE L1 6094 6120 -1 1279 164 0 22 chr3 24841359 24841590 -193195568 - AluJb SINE Alu -74 238 13 260 203 172 0 chr3 24841597 24841661 -193195497 - MER5B DNA MER1_type -114 75 1 480 329 85 16 chr3 24841801 24842047 -193195111 - L3 LINE CR1 -252 1325 1063 352 293 43 57 chr3 24842557 24842697 -193194461 - L3 LINE CR1 -666 911 774 1236 193 54 51 chr3 24843439 24843722 -193193436 + MLT1E2 LTR MaLR 287 573 -53 333 0 0 0 chr3 24843722 24843759 -193193399 + (TG)n Simple_repeat Simple_repeat 2 38 0 1236 193 54 51 chr3 24843759 24843771 -193193387 + MLT1E2 LTR MaLR 573 583 -43 2051 152 68 86 chr3 24843870 24844338 -193192820 + MLT2B1 LTR ERVL 61 520 0 275 184 0 0 chr3 24844694 24844743 -193192415 + L2 LINE L2 3261 3309 -4 904 288 71 44 chr3 24845066 24845473 -193191685 + MLT1L LTR MaLR 197 614 -1 972 219 45 28 chr3 24845720 24846024 -193191134 - MLT1D LTR MaLR 0 485 200 707 254 82 45 chr3 24846276 24846564 -193190594 - LTR16A1 LTR ERVL -2 455 175 22 0 0 0 chr3 24846790 24846812 -193190346 + AT_rich Low_complexity Low_complexity 1 22 0 1924 189 56 8 chr3 24848176 24848568 -193188590 - MLT2D LTR ERVL -3 411 1 507 294 54 21 chr3 24848570 24848878 -193188280 - L1MC4a LINE L1 -364 5798 5568 612 345 185 18 chr3 24849249 24849957 -193187201 + L3 LINE CR1 92 917 -660 259 371 11 0 chr3 24850624 24850713 -193186445 + L3 LINE CR1 1073 1162 -415 495 283 64 44 chr3 24851116 24851367 -193185791 - MIR SINE MIR -6 256 1 906 204 21 37 chr3 24851904 24852000 -193185158 + MER5A DNA MER1_type 1 94 -95 1548 202 30 48 chr3 24852000 24852396 -193184762 + MLT1B LTR MaLR 2 390 0 906 204 21 37 chr3 24852396 24852490 -193184668 + MER5A DNA MER1_type 94 188 -1 183 175 0 111 chr3 24852670 24852733 -193184425 - L2 LINE L2 -212 3060 3005 4729 173 6 28 chr3 24852861 24853717 -193183441 - MLT1A1-int LTR MaLR -898 837 1 1112 229 29 81 chr3 24853717 24854062 -193183096 - MLT1A1 LTR MaLR 0 365 39 943 189 27 27 chr3 24854085 24854270 -193182888 - MER5A DNA MER1_type -3 186 2 2120 95 3 0 chr3 24855268 24855595 -193181563 + AluSx SINE Alu 1 328 0 626 231 30 0 chr3 24855849 24855983 -193181175 + MIR SINE MIR 82 219 -43 201 74 0 0 chr3 24856865 24856892 -193180266 + (T)n Simple_repeat Simple_repeat 1 27 0 1980 124 7 3 chr3 24857185 24857491 -193179667 + AluSx SINE Alu 1 307 -5 1605 174 33 105 chr3 24857757 24858177 -193178981 + MLT1B LTR MaLR 1 390 0 304 274 130 43 chr3 24858339 24858547 -193178611 + L1ME4a LINE L1 5114 5339 -807 1531 153 94 0 chr3 24858605 24858880 -193178278 - AluJb SINE Alu -11 301 1 619 311 114 21 chr3 24858885 24859455 -193177703 + L1ME4a LINE L1 5445 6067 -54 406 306 75 35 chr3 24859534 24859707 -193177451 + L3 LINE CR1 1297 1476 -101 592 287 196 23 chr3 24859708 24860105 -193177053 - L2 LINE L2 -1 3312 2847 245 280 132 44 chr3 24860139 24860321 -193176837 + MLT1I LTR MaLR 91 288 -121 420 206 82 82 chr3 24860330 24860476 -193176682 + MLT1H LTR MaLR 404 549 0 219 287 69 35 chr3 24862840 24862927 -193174231 - L2 LINE L2 -23 3290 3201 25 0 0 0 chr3 24863065 24863090 -193174068 + AT_rich Low_complexity Low_complexity 1 25 0 321 262 0 12 chr3 24863121 24863205 -193173953 + L1ME3A LINE L1 5781 5863 -307 760 255 43 4 chr3 24863212 24863443 -193173715 + L1ME3A LINE L1 5922 6161 -9 26 0 0 0 chr3 24863849 24863875 -193173283 + AT_rich Low_complexity Low_complexity 1 26 0 287 237 26 0 chr3 24864135 24864211 -193172947 + L1MC5 LINE L1 7320 7397 -564 266 260 33 40 chr3 24864421 24864571 -193172587 + (CAGGG)n Simple_repeat Simple_repeat 1 149 0 497 277 63 0 chr3 24865057 24865216 -193171942 + MIR SINE MIR 73 241 -21 2192 60 7 30 chr3 24866799 24867099 -193170059 + AluY SINE Alu 1 293 -18 896 218 24 24 chr3 24867135 24867341 -193169817 - MER3 DNA MER1_type -3 206 1 347 236 8 65 chr3 24869778 24869901 -193167257 + MER113 DNA MER1_type? 92 207 -314 970 239 94 20 chr3 24870498 24870795 -193166363 - LTR16C LTR ERVL -8 483 165 208 233 14 68 chr3 24872587 24872660 -193164498 - MIR SINE MIR -144 118 50 275 292 21 10 chr3 24873809 24873905 -193163253 + MIR SINE MIR 126 222 -40 234 248 154 17 chr3 24874605 24874722 -193162436 - MIR SINE MIR -21 241 109 219 232 120 56 chr3 24875606 24875731 -193161427 + MIR3 SINE MIR 11 143 -65 439 267 129 56 chr3 24877774 24878006 -193159152 - MIR SINE MIR 0 262 14 302 326 78 0 chr3 24878524 24878653 -193158505 + MIR SINE MIR 6 144 -118 1299 128 5 0 chr3 24878975 24879163 -193157995 + MER5A DNA MER1_type 1 189 0 489 221 88 0 chr3 24879165 24879278 -193157880 + L2 LINE L2 3191 3313 0 276 219 126 17 chr3 24879620 24879739 -193157419 + L1ME4a LINE L1 5987 6118 -3 211 281 8 86 chr3 24880023 24880151 -193157007 - L2 LINE L2 -258 3014 2897 438 266 18 0 chr3 24880537 24880646 -193156512 - L1ME LINE L1 -454 5667 5557 292 303 41 14 chr3 24880888 24881033 -193156125 + L2 LINE L2 2130 2278 -1036 24 0 0 0 chr3 24881952 24881976 -193155182 + AT_rich Low_complexity Low_complexity 1 24 0 2286 143 60 18 chr3 24882309 24882708 -193154450 + MLT2C2 LTR ERVL 1 416 -48 1215 159 10 5 chr3 24883113 24883321 -193153837 - MER3 DNA MER1_type 0 209 1 325 294 20 2 chr3 24883882 24884007 -193153151 + MIR SINE MIR 30 154 -62 1064 221 33 8 chr3 24884715 24884959 -193152199 - MIR SINE MIR -5 257 8 199 304 113 26 chr3 24885003 24885197 -193151961 - L2 LINE L2 -481 2833 2623 361 209 15 0 chr3 24885372 24885439 -193151719 + MER94 DNA DNA 64 131 -3 369 0 0 0 chr3 24885978 24886019 -193151139 + (TC)n Simple_repeat Simple_repeat 2 42 0 454 300 0 0 chr3 24886660 24886780 -193150378 + L2 LINE L2 3194 3313 0 209 294 59 12 chr3 24886904 24886989 -193150169 - MIR3 SINE MIR -32 176 88 1354 221 58 29 chr3 24888108 24888628 -193148530 + MLT1G1 LTR MaLR 1 542 0 237 336 9 0 chr3 24889453 24889560 -193147598 + (CCA)n Simple_repeat Simple_repeat 3 110 0 22 35 0 0 chr3 24889693 24889722 -193147436 + AT_rich Low_complexity Low_complexity 1 29 0 225 245 0 0 chr3 24890201 24890250 -193146908 - MIR3 SINE MIR -2 206 158 243 0 0 0 chr3 24890265 24890292 -193146866 + (T)n Simple_repeat Simple_repeat 1 27 0 207 182 39 0 chr3 24890957 24891034 -193146124 + (TA)n Simple_repeat Simple_repeat 1 80 0 225 87 130 0 chr3 24891039 24891085 -193146073 - L1MC4 LINE L1 -1340 6702 6651 181 167 0 0 chr3 24891388 24891424 -193145734 - L2 LINE L2 -2 3270 3235 180 0 0 0 chr3 24891448 24891468 -193145690 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 184 319 35 86 chr3 24891475 24891707 -193145451 - L2 LINE L2 -126 3187 2968 2278 98 0 10 chr3 24892041 24892348 -193144810 - AluY SINE Alu -7 304 1 1763 170 3 38 chr3 24892474 24892791 -193144367 + AluJo SINE Alu 1 306 -6 911 215 196 32 chr3 24892799 24893115 -193144043 + L1ME3A LINE L1 5796 6163 -7 21 0 0 0 chr3 24893473 24893494 -193143664 + AT_rich Low_complexity Low_complexity 1 21 0 621 231 178 0 chr3 24893756 24893837 -193143321 + Charlie5 DNA MER1_type 2 67 -2557 1610 138 4 28 chr3 24893837 24894090 -193143068 - AluJo SINE Alu -17 295 49 621 231 178 0 chr3 24894090 24894177 -193142981 + Charlie5 DNA MER1_type 67 200 -2424 313 138 138 0 chr3 24894175 24894233 -193142925 + Charlie5 DNA MER1_type 2352 2417 -195 * 240 194 0 0 chr3 24894230 24894266 -193142892 - AluJo SINE Alu -250 52 17 * 576 174 78 50 chr3 24894255 24894473 -193142685 + Charlie5 DNA MER1_type 2382 2605 -7 22 35 0 0 chr3 24894658 24894687 -193142471 + AT_rich Low_complexity Low_complexity 1 29 0 424 167 0 0 chr3 24894687 24894753 -193142405 - AluJ/FRAM SINE Alu -21 291 226 2453 101 0 0 chr3 24895170 24895476 -193141682 + AluSq SINE Alu 1 306 -7 2274 150 95 35 chr3 24895496 24895989 -193141169 + L1MA9 LINE L1 5752 6274 -38 224 122 24 0 chr3 24896162 24896203 -193140955 + CT-rich Low_complexity Low_complexity 1 42 0 237 198 27 117 chr3 24896265 24896350 -193140808 + MER103 DNA DNA 20 94 -72 2532 55 7 7 chr3 24896350 24896659 -193140499 + AluSg SINE Alu 1 309 -1 237 198 27 117 chr3 24896659 24896684 -193140474 + MER103 DNA DNA 94 120 -46 24 0 0 0 chr3 24897646 24897670 -193139488 + AT_rich Low_complexity Low_complexity 1 24 0 217 281 255 42 chr3 24897869 24898637 -193138521 + L2 LINE L2 1977 2908 -406 1559 153 36 68 chr3 24899417 24899725 -193137433 + AluJb SINE Alu 3 300 -12 297 351 87 5 chr3 24899788 24899996 -193137162 + L2 LINE L2 1832 2056 -1258 284 198 143 11 chr3 24900008 24900099 -193137059 + MER5C DNA MER1_type 222 324 0 289 290 21 0 chr3 24900215 24900308 -193136850 + Charlie8 DNA MER1_type 157 251 -2166 503 258 92 37 chr3 24901627 24901844 -193135314 + MIR SINE MIR 3 231 -31 541 80 16 59 chr3 24901960 24902147 -193135011 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 584 44 116 0 chr3 24902136 24902456 -193134702 + (TA)n Simple_repeat Simple_repeat 1 357 0 503 181 169 46 chr3 24904663 24904708 -193132450 - LTR37B LTR ERV1 -2 466 428 874 171 127 0 chr3 24904708 24904889 -193132269 - MER6B DNA MER2_type -3 207 4 503 181 169 46 chr3 24904889 24905080 -193132078 - LTR37B LTR ERV1 -40 428 201 1731 163 3 39 chr3 24905236 24905542 -193131616 - AluJo SINE Alu -17 295 1 190 221 91 13 chr3 24906377 24906454 -193130704 + L2 LINE L2 3221 3303 -10 184 224 53 40 chr3 24906674 24906750 -193130408 + L2 LINE L2 3221 3297 -16 1128 105 13 0 chr3 24907583 24907735 -193129423 - AluSq SINE Alu -26 287 134 2374 80 0 7 chr3 24907735 24908035 -193129123 - AluSx SINE Alu -12 300 3 24 0 0 0 chr3 24908041 24908065 -193129093 + AT_rich Low_complexity Low_complexity 1 24 0 423 0 0 0 chr3 24908263 24908310 -193128848 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr3 24908559 24908583 -193128575 + AT_rich Low_complexity Low_complexity 1 24 0 1998 245 116 8 chr3 24910623 24911157 -193126001 + MLT1E LTR MaLR 1 592 -1 464 243 14 14 chr3 24911909 24912053 -193125105 + MIR SINE MIR 76 219 -43 1644 247 99 99 chr3 24912157 24912375 -193124783 - L2 LINE L2 0 3313 3096 2271 123 10 0 chr3 24912375 24912684 -193124474 + AluSx SINE Alu 1 312 0 1644 247 99 99 chr3 24912684 24913447 -193123711 - L2 LINE L2 -217 3096 2285 227 200 71 29 chr3 24913447 24913517 -193123641 - L1MC4 LINE L1 -1322 6720 6648 1644 247 99 99 chr3 24913517 24913821 -193123337 - L2 LINE L2 -1028 2285 1982 1207 178 54 8 chr3 24914421 24914662 -193122496 + L1MD3 LINE L1 7721 7972 -23 920 93 0 0 chr3 24914918 24915047 -193122111 - L1MB4 LINE L1 0 6180 6052 1799 139 60 30 chr3 24915048 24915350 -193121808 - AluJb SINE Alu -1 311 1 1510 143 9 0 chr3 24915834 24916057 -193121101 - AluJb SINE Alu -87 225 1 727 183 41 71 chr3 24918666 24918835 -193118323 + MER3 DNA MER1_type 27 190 -19 596 180 152 0 chr3 24918863 24919017 -193118141 - MER5A DNA MER1_type -5 184 4 257 226 29 29 chr3 24919127 24919229 -193117929 - Charlie7 DNA MER1_type -99 2513 2412 955 262 151 66 chr3 24919241 24919397 -193117761 - Charlie7 DNA MER1_type -1919 693 552 2433 86 0 3 chr3 24919397 24919700 -193117458 - AluSc SINE Alu -7 302 1 955 262 151 66 chr3 24919700 24920105 -193117053 - Charlie7 DNA MER1_type -2060 552 84 2449 71 0 7 chr3 24920399 24920694 -193116464 + AluSc SINE Alu 1 293 -16 340 322 69 39 chr3 24920702 24920935 -193116223 + L1M4 LINE L1 4724 4963 -1183 2390 81 0 7 chr3 24920935 24921231 -193115927 + AluY SINE Alu 1 294 -17 915 202 67 19 chr3 24921263 24921471 -193115687 + MER20 DNA MER1_type 1 218 -1 345 24 0 0 chr3 24924711 24924753 -193112405 + (TG)n Simple_repeat Simple_repeat 2 43 0 413 123 0 15 chr3 24925218 24925283 -193111875 + Charlie8 DNA MER1_type 103 166 -2251 229 290 124 108 chr3 24927486 24927745 -193109413 + L2 LINE L2 3008 3270 -2 1736 186 7 3 chr3 24928155 24928462 -193108696 - AluJo SINE Alu -4 308 1 195 263 123 0 chr3 24928611 24928668 -193108490 + L2 LINE L2 422 485 -2829 347 285 18 42 chr3 24929110 24929275 -193107883 - MIR3 SINE MIR -37 171 11 505 243 151 0 chr3 24929378 24929530 -193107628 + MER5A DNA MER1_type 9 183 -6 525 327 118 0 chr3 24929953 24930173 -193106985 + MIR SINE MIR 16 261 -1 1898 177 0 0 chr3 24930286 24930596 -193106562 + AluJb SINE Alu 1 310 -2 897 161 0 0 chr3 24930606 24930736 -193106422 + FLAM_C SINE Alu 2 131 -2 27 0 0 0 chr3 24931224 24931251 -193105907 + AT_rich Low_complexity Low_complexity 1 27 0 1495 164 47 37 chr3 24932292 24932412 -193104746 + AluJb SINE Alu 1 118 -194 315 0 0 0 chr3 24932412 24932447 -193104711 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1495 164 47 37 chr3 24932447 24932625 -193104533 + AluJb SINE Alu 118 302 -10 250 220 34 0 chr3 24932696 24932755 -193104403 + GA-rich Low_complexity Low_complexity 2 62 0 419 233 165 94 chr3 24933055 24933337 -193103821 - L1MC4a LINE L1 -1635 6173 5856 2301 104 0 3 chr3 24933337 24933645 -193103513 + AluSq SINE Alu 1 307 -6 419 233 165 94 chr3 24933645 24933744 -193103414 - L1MC4a LINE L1 -1952 5856 5765 338 240 126 113 chr3 24933745 24933866 -193103292 - L1MC4a LINE L1 -2082 5726 5608 639 63 0 0 chr3 24933866 24933945 -193103213 + L1MA3 LINE L1 6225 6303 -2 338 240 126 113 chr3 24933945 24933968 -193103190 - L1MC4a LINE L1 -2200 5608 5587 254 93 0 23 chr3 24933968 24934011 -193103147 + (TA)n Simple_repeat Simple_repeat 2 43 0 338 240 126 113 chr3 24934011 24934332 -193102826 - L1MC4a LINE L1 -2221 5587 5254 741 142 0 0 chr3 24934409 24934515 -193102643 - AluSg/x SINE Alu -14 296 191 306 349 115 0 chr3 24934520 24934712 -193102446 - L1MC4a LINE L1 -979 5167 4954 392 336 74 45 chr3 24934819 24935266 -193101892 - L1MC4a LINE L1 -1344 4802 4343 1366 148 0 14 chr3 24935481 24935698 -193101460 + AluJb SINE Alu 55 268 -44 252 0 0 0 chr3 24935702 24935730 -193101428 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 401 195 91 0 chr3 24935730 24935807 -193101351 + MER96B DNA MER1_type? 170 253 -164 2237 125 0 3 chr3 24936354 24936666 -193100492 + AluSx SINE Alu 2 312 0 244 258 22 67 chr3 24936730 24936819 -193100339 + MIR SINE MIR 119 203 -59 294 290 58 72 chr3 24937452 24937590 -193099568 + MIR3 SINE MIR 72 207 -1 1204 152 0 0 chr3 24938309 24938487 -193098671 - AluSg/x SINE Alu -66 246 69 302 250 136 50 chr3 24938745 24938885 -193098273 - Charlie8 DNA MER1_type -2244 173 22 234 192 0 0 chr3 24939350 24939402 -193097756 + A-rich Low_complexity Low_complexity 1 52 0 279 0 0 0 chr3 24940180 24940211 -193096947 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1221 181 0 27 chr3 24940249 24940470 -193096688 - L1MB5 LINE L1 0 6174 5960 5557 161 17 14 chr3 24940513 24941528 -193095630 - L1MA9 LINE L1 -39 6273 5257 329 0 24 0 chr3 24941794 24941835 -193095323 + (CA)n Simple_repeat Simple_repeat 2 43 0 4815 144 27 1 chr3 24942440 24943175 -193093983 + MER6 DNA MER2_type 111 864 -1 237 226 19 0 chr3 24943336 24943389 -193093769 + GA-rich Low_complexity Low_complexity 2 55 0 262 209 0 22 chr3 24943443 24943534 -193093624 + CT-rich Low_complexity Low_complexity 2 90 0 342 0 0 0 chr3 24943534 24943572 -193093586 + (CA)n Simple_repeat Simple_repeat 1 38 0 1630 147 45 13 chr3 24943583 24943895 -193093263 + MER33 DNA MER1_type 3 324 0 588 153 110 0 chr3 24944354 24944472 -193092686 - L1MB3 LINE L1 -7 6176 6046 301 281 0 0 chr3 24946002 24946066 -193091092 + polypyrimidine Low_complexity Low_complexity 1 64 0 1366 162 54 17 chr3 24946067 24946364 -193090794 + MER33 DNA MER1_type 17 324 0 693 289 70 0 chr3 24947378 24947579 -193089579 + MIR SINE MIR 32 246 -16 495 321 58 47 chr3 24948963 24949306 -193087852 - L2 LINE L2 -961 2353 2007 4051 167 79 9 chr3 24949584 24950268 -193086890 - MER44D DNA MER2_type -1 604 1 800 281 66 4 chr3 24951052 24951294 -193085864 - MIR SINE MIR 0 262 6 280 331 99 7 chr3 24951306 24951448 -193085710 - MIR3 SINE MIR -45 163 9 232 155 24 179 chr3 24952399 24952483 -193084675 + MER5A DNA MER1_type 35 105 -84 275 259 15 44 chr3 24952524 24952659 -193084499 + MER117 DNA MER1_type 32 162 -35 261 330 53 0 chr3 24952857 24952951 -193084207 + L2 LINE L2 3209 3307 -6 588 165 0 33 chr3 24954629 24954750 -193082408 - Charlie1 DNA MER1_type -25 2736 2620 * 822 202 187 5 chr3 24954738 24954936 -193082222 - Charlie1 DNA MER1_type -2527 234 1 601 271 181 0 chr3 24955307 24955528 -193081630 + MIR SINE MIR 2 262 0 1539 176 15 112 chr3 24955819 24956222 -193080936 + MLT1A1 LTR MaLR 2 365 0 283 299 15 0 chr3 24956223 24956290 -193080868 - L2 LINE L2 -17 3255 3188 1865 157 20 3 chr3 24956981 24957281 -193079877 - AluJb SINE Alu -7 305 1 863 173 46 12 chr3 24957466 24957639 -193079519 + AluJo SINE Alu 101 279 -33 26 64 0 0 chr3 24957644 24957691 -193079467 + AT_rich Low_complexity Low_complexity 1 47 0 213 233 0 0 chr3 24959464 24959507 -193077651 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 861 254 18 5 chr3 24960108 24960328 -193076830 + MIR SINE MIR 10 232 -30 1367 207 127 55 chr3 24960379 24960837 -193076321 + MLT1D LTR MaLR 15 505 0 752 250 54 92 chr3 24961174 24961881 -193075277 - L1ME LINE L1 -4981 1089 545 1286 156 8 63 chr3 24962678 24962915 -193074243 + MER58A DNA MER1_type 1 224 0 324 0 0 0 chr3 24963470 24963506 -193073652 + (CA)n Simple_repeat Simple_repeat 2 37 0 259 224 0 0 chr3 24964802 24964860 -193072298 + (CA)n Simple_repeat Simple_repeat 2 59 0 217 205 0 0 chr3 24965807 24965846 -193071312 + GA-rich Low_complexity Low_complexity 2 40 0 180 0 0 0 chr3 24966680 24966700 -193070458 + (A)n Simple_repeat Simple_repeat 1 20 0 594 272 214 0 chr3 24967176 24967382 -193069776 + MIR SINE MIR 13 262 0 287 273 11 23 chr3 24967994 24968082 -193069076 - MIR SINE MIR -77 131 45 186 262 0 0 chr3 24968146 24968188 -193068970 + MIR SINE MIR 107 148 -114 2761 233 57 16 chr3 24968202 24968271 -193068887 + L1ME LINE L1 7 72 -5998 249 83 0 0 chr3 24968271 24968307 -193068851 + (CA)n Simple_repeat Simple_repeat 1 36 0 222 37 0 0 chr3 24968309 24968336 -193068822 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2761 233 57 16 chr3 24968336 24968998 -193068160 + L1ME LINE L1 72 771 -5299 607 299 87 9 chr3 24969342 24969573 -193067585 + MIR SINE MIR 1 249 -13 217 364 13 0 chr3 24969589 24969666 -193067492 - MIR SINE MIR -86 122 45 22 35 0 0 chr3 24969838 24969867 -193067291 + AT_rich Low_complexity Low_complexity 1 29 0 210 222 52 111 chr3 24970888 24971023 -193066135 + MIR3 SINE MIR 12 138 -70 2104 132 0 19 chr3 24971437 24971755 -193065403 - AluSx SINE Alu 0 312 1 210 250 0 0 chr3 24972060 24972100 -193065058 - MIR SINE MIR -57 151 112 393 239 130 93 chr3 24972173 24972420 -193064738 - MIR SINE MIR 0 262 7 1451 278 45 47 chr3 24972879 24972963 -193064195 + ERVL LTR ERVL 4750 4833 -931 2422 158 82 2 chr3 24972963 24973363 -193063795 + MSTB1 LTR MaLR 1 432 0 1451 278 45 47 chr3 24973363 24973829 -193063329 + ERVL LTR ERVL 4833 5299 -465 354 260 164 7 chr3 24974116 24974262 -193062896 + LTR50 LTR ERVL 1 169 -626 719 253 113 58 chr3 24974352 24974704 -193062454 - L2 LINE L2 0 3313 2951 436 191 22 11 chr3 24976129 24976218 -193060940 + LTR16A1 LTR ERVL 55 144 -313 711 227 35 0 chr3 24976380 24976521 -193060637 - MIR SINE MIR -116 146 1 1939 178 60 93 chr3 24976564 24977111 -193060047 - MLT1F1 LTR MaLR -13 554 3 269 276 138 0 chr3 24978087 24978174 -193058984 + L2 LINE L2 3215 3313 0 438 94 0 0 chr3 24979015 24979079 -193058079 + (CA)n Simple_repeat Simple_repeat 2 65 0 375 319 30 7 chr3 24980570 24980705 -193056453 + MIR SINE MIR 10 147 -115 228 149 21 21 chr3 24981557 24981604 -193055554 - MER5B DNA MER1_type -85 93 47 1208 158 0 0 chr3 24981844 24982028 -193055130 + MER5A DNA MER1_type 5 188 -1 270 214 38 114 chr3 24982855 24982986 -193054172 + MIR SINE MIR 80 200 -62 1511 175 41 16 chr3 24983045 24983365 -193053793 + L1ME1 LINE L1 5521 5848 -318 1143 213 108 20 chr3 24983530 24983835 -193053323 + L1ME1 LINE L1 5830 6161 -5 254 330 145 19 chr3 24984209 24984582 -193052576 + L2 LINE L2 2546 2965 -349 954 174 60 65 chr3 24984825 24985240 -193051918 + MLT1A2 LTR MaLR 1 374 0 267 301 60 0 chr3 24985255 24985338 -193051820 + L2 LINE L2 3185 3272 0 1053 170 26 10 chr3 24985471 24985665 -193051493 + MER3 DNA MER1_type 13 209 0 2257 84 13 0 chr3 24986149 24986447 -193050711 - AluSp SINE Alu -11 302 1 349 289 41 8 chr3 24986749 24986870 -193050288 + MIR SINE MIR 39 163 -99 1388 209 94 44 chr3 24986870 24987184 -193049974 + L1ME1 LINE L1 5644 5996 -166 1990 134 0 0 chr3 24987184 24987475 -193049683 + AluSx SINE Alu 1 291 -21 1388 209 94 44 chr3 24987475 24987647 -193049511 + L1ME1 LINE L1 5996 6158 -4 2041 135 0 0 chr3 24987680 24987984 -193049174 + AluSx SINE Alu 7 310 -2 832 263 41 7 chr3 24988643 24988945 -193048213 + L1ME4a LINE L1 5569 5897 -224 1020 217 114 48 chr3 24988958 24989473 -193047685 - L2 LINE L2 -4 3309 2713 245 50 0 25 chr3 24989798 24989838 -193047320 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 182 261 43 0 chr3 24990384 24990430 -193046728 - L2 LINE L2 -15 3257 3210 * 502 278 52 77 chr3 24990398 24990592 -193046566 - MIR SINE MIR -25 237 49 183 313 16 0 chr3 24990879 24990943 -193046215 + L2 LINE L2 3192 3256 -16 478 228 14 83 chr3 24991190 24991284 -193045874 + Charlie8 DNA MER1_type 9 91 -250 2305 71 0 3 chr3 24991284 24991579 -193045579 - AluSx SINE Alu -16 296 3 478 228 14 83 chr3 24991579 24991629 -193045529 + Charlie8 DNA MER1_type 91 143 -198 661 244 137 0 chr3 24993780 24993948 -193043210 - MER91A DNA MER1_type -5 191 1 2676 256 56 22 chr3 24994017 24994181 -193042977 + L1ME3A LINE L1 5079 5236 -934 830 224 71 5 chr3 24994181 24994377 -193042781 + MER63A DNA MER1_type 2 210 0 2676 256 56 22 chr3 24994377 24995274 -193041884 + L1ME3A LINE L1 5236 6170 0 879 241 200 11 chr3 24996190 24996555 -193040603 + MER57B LTR ERV1 1 434 0 774 254 198 47 chr3 24997240 24997709 -193039449 + MLT1G1 LTR MaLR 4 543 -24 881 196 6 6 chr3 24997811 24997974 -193039184 - L1MC/D LINE L1 -591 5768 5606 183 80 0 0 chr3 24998820 24998845 -193038313 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 291 226 129 0 chr3 24998845 24998938 -193038220 - L2 LINE L2 -13 3259 3155 775 231 6 0 chr3 24999027 24999183 -193037975 + AluJo SINE Alu 125 281 -31 207 69 0 0 chr3 24999191 24999220 -193037938 + (CA)n Simple_repeat Simple_repeat 2 30 0 364 284 43 72 chr3 24999922 25000130 -193037028 + L1ME4a LINE L1 5851 6052 -69 1393 125 40 98 chr3 25000165 25000461 -193036697 + AluJb SINE Alu 33 311 -1 2469 177 107 4 chr3 25000486 25000972 -193036186 + MLT1F LTR MaLR 7 542 0 294 185 0 0 chr3 25001041 25001095 -193036063 + MLT1G1 LTR MaLR 512 565 -2 543 226 168 0 chr3 25001267 25001422 -193035736 + MER5A DNA MER1_type 9 189 0 646 208 195 0 chr3 25001430 25001579 -193035579 + MER5B DNA MER1_type 1 178 0 2718 204 45 7 chr3 25002102 25002662 -193034496 - MER119 DNA MER1_type 0 583 3 2142 139 25 70 chr3 25003447 25003878 -193033280 - MLT2D LTR ERVL -2 412 1 899 281 28 61 chr3 25003920 25004311 -193032847 - L2 LINE L2 0 3313 2936 305 274 68 0 chr3 25004354 25004471 -193032687 - L2 LINE L2 -471 2843 2719 779 254 203 4 chr3 25004506 25004782 -193032376 - L2 LINE L2 -728 2586 2256 205 340 90 0 chr3 25004807 25004907 -193032251 + L2 LINE L2 3145 3253 -19 847 218 86 49 chr3 25005013 25005256 -193031902 + MIR SINE MIR 1 252 -10 444 123 0 0 chr3 25005648 25005721 -193031437 + (CA)n Simple_repeat Simple_repeat 2 74 0 960 156 0 0 chr3 25005732 25005912 -193031246 + (CA)n Simple_repeat Simple_repeat 1 180 0 291 54 0 0 chr3 25006735 25006772 -193030386 + (CA)n Simple_repeat Simple_repeat 1 37 0 1087 167 24 29 chr3 25006902 25007112 -193030046 + MER3 DNA MER1_type 1 209 0 507 274 92 6 chr3 25007441 25007605 -193029553 + MIR SINE MIR 85 262 0 243 276 0 61 chr3 25007832 25007930 -193029228 - L2 LINE L2 -6 3307 3216 263 179 75 60 chr3 25008469 25008536 -193028622 + L3b LINE CR1 1430 1497 -86 2125 207 56 78 chr3 25008683 25009341 -193027817 + L1ME2 LINE L1 5511 6154 -10 236 179 179 24 chr3 25009506 25009590 -193027568 + L1MC4 LINE L1 7929 8025 -17 30 77 0 0 chr3 25011723 25011788 -193025370 + GC_rich Low_complexity Low_complexity 1 65 0 532 276 0 0 chr3 25012469 25012585 -193024573 + MIR SINE MIR 5 120 -142 276 152 0 0 chr3 25013669 25013715 -193023443 + L2 LINE L2 3268 3313 0 243 0 0 0 chr3 25015314 25015341 -193021817 + (A)n Simple_repeat Simple_repeat 1 27 0 1129 276 53 18 chr3 25016637 25017032 -193020126 + MLT1I LTR MaLR 1 409 0 455 258 16 16 chr3 25017210 25017334 -193019824 - L2 LINE L2 0 3313 3190 280 329 14 71 chr3 25017349 25017489 -193019669 - MIR3 SINE MIR -68 140 9 301 226 0 0 chr3 25017632 25017694 -193019464 + L2 LINE L2 3210 3271 -1 549 324 74 34 chr3 25018241 25018537 -193018621 + L1ME LINE L1 20 327 -5743 214 260 0 0 chr3 25019473 25019523 -193017635 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 368 302 8 8 chr3 25020241 25020367 -193016791 - LTR67 LTR ERVL 0 557 432 773 267 124 50 chr3 25020380 25020841 -193016317 + MLT1H1 LTR MaLR 35 535 -20 2632 136 29 10 chr3 25020841 25021259 -193015899 - MSTB LTR MaLR 0 426 1 773 267 124 50 chr3 25021259 25021280 -193015878 + MLT1H1 LTR MaLR 535 553 -2 625 266 25 19 chr3 25022351 25022544 -193014614 - MLT1G1 LTR MaLR -6 587 372 270 138 32 32 chr3 25022549 25022643 -193014515 + CT-rich Low_complexity Low_complexity 2 95 0 998 234 63 23 chr3 25022648 25022947 -193014211 - MLT1G1 LTR MaLR -284 311 1 829 232 25 51 chr3 25022947 25023269 -193013889 - LTR16A1 LTR ERVL -7 450 81 1311 248 35 64 chr3 25023540 25023992 -193013166 - MLT1K LTR MaLR -58 530 92 330 282 35 114 chr3 25024482 25024737 -193012421 + L3b LINE CR1 1151 1385 -198 276 242 61 10 chr3 25024942 25025041 -193012117 - MLT1L LTR MaLR 0 615 512 294 269 144 38 chr3 25025105 25025265 -193011893 - MLT1L LTR MaLR -228 387 211 548 314 64 70 chr3 25025539 25025995 -193011163 + MLT1K LTR MaLR 133 585 -3 341 246 27 27 chr3 25026344 25026454 -193010704 + MIR3 SINE MIR 97 206 -2 230 239 303 0 chr3 25026451 25026560 -193010598 - MIR3 SINE MIR -44 164 23 * 466 281 6 31 chr3 25027350 25027510 -193009648 + MER112 DNA MER1_type 6 161 -99 1478 174 26 40 chr3 25027537 25027841 -193009317 - AluJo SINE Alu -8 304 5 793 297 59 41 chr3 25028125 25028566 -193008592 - LTR16B LTR ERVL -15 449 1 407 288 141 61 chr3 25028596 25029369 -193007789 - L2 LINE L2 -2 3270 2453 280 278 74 37 chr3 25030326 25030434 -193006724 + L2 LINE L2 3202 3313 0 4628 144 26 1 chr3 25030791 25031526 -193005632 - L1MB3 LINE L1 -4 6179 5427 1380 134 104 5 chr3 25031554 25031890 -193005268 - LTR47A LTR ERVL 0 452 1 * 2194 160 27 3 chr3 25031890 25032257 -193004901 - MSTB1 LTR MaLR -40 392 17 256 86 0 0 chr3 25032276 25032311 -193004847 - MSTB LTR MaLR -379 53 19 292 54 0 0 chr3 25032332 25032369 -193004789 - MSTB LTR MaLR -373 53 17 256 86 0 0 chr3 25032360 25032395 -193004763 - MSTB LTR MaLR -379 53 19 * 256 62 0 0 chr3 25032388 25032420 -193004738 - MSTB1 LTR MaLR -373 53 22 282 167 0 19 chr3 25032444 25032498 -193004660 - MSTB1 LTR MaLR -379 53 1 884 98 0 8 chr3 25032498 25032631 -193004527 - L1MB3 LINE L1 -734 5449 5318 1823 184 103 29 chr3 25032636 25033054 -193004104 - L1ME2 LINE L1 -10 6154 5706 315 292 180 25 chr3 25033180 25033341 -193003817 - MIR SINE MIR -14 248 63 2249 90 3 10 chr3 25033600 25033900 -193003258 + AluSg SINE Alu 1 298 -12 1727 233 42 22 chr3 25034151 25034602 -193002556 + MLT1J LTR MaLR 24 483 -28 376 259 167 19 chr3 25034883 25035045 -193002113 + MIR SINE MIR 77 262 0 284 48 24 0 chr3 25035802 25035844 -193001314 + (TA)n Simple_repeat Simple_repeat 2 44 0 31 26 0 0 chr3 25035856 25035894 -193001264 + AT_rich Low_complexity Low_complexity 1 38 0 658 99 44 0 chr3 25035894 25036171 -193000987 + (TA)n Simple_repeat Simple_repeat 1 289 0 319 200 14 14 chr3 25036171 25036241 -193000917 + L1MCa LINE L1 1995 2064 -4362 313 131 47 0 chr3 25036243 25036350 -193000808 + (TA)n Simple_repeat Simple_repeat 1 112 0 251 265 0 15 chr3 25036858 25036926 -193000232 - LTR67 LTR ERVL -1 556 490 260 241 160 0 chr3 25037217 25037337 -192999821 + MIR SINE MIR 100 246 -16 21 0 0 0 chr3 25037339 25037360 -192999798 + AT_rich Low_complexity Low_complexity 1 21 0 429 335 56 37 chr3 25038296 25038511 -192998647 - L2 LINE L2 -527 2787 2569 1717 181 0 23 chr3 25040074 25040384 -192996774 - AluJo SINE Alu -9 303 1 410 253 42 58 chr3 25040921 25041111 -192996047 - MLT1J LTR MaLR 0 511 325 1793 232 21 22 chr3 25041116 25041650 -192995508 - MER119 DNA MER1_type 0 583 1 307 239 0 0 chr3 25042373 25042440 -192994718 + MER116 DNA Mariner 8 74 -6 234 250 26 26 chr3 25043098 25043174 -192993984 + MIR SINE MIR 56 131 -131 2087 52 16 0 chr3 25043963 25044214 -192992944 + L1PA6 LINE L1 5898 6152 -2 608 233 0 32 chr3 25044504 25044684 -192992474 + MIR SINE MIR 33 203 -59 300 278 83 49 chr3 25044742 25044886 -192992272 - L3 LINE CR1 -6 1571 1423 1448 264 70 22 chr3 25045848 25046345 -192990813 + MLT1L LTR MaLR 1 521 -94 613 240 180 11 chr3 25046351 25046534 -192990624 + MIR SINE MIR 12 225 -37 2519 174 44 21 chr3 25046665 25047187 -192989971 + L1M4 LINE L1 5285 5818 -356 261 261 232 21 chr3 25047195 25047436 -192989722 + L1M4 LINE L1 4358 4649 -1497 703 175 16 48 chr3 25047489 25047615 -192989543 + FLAM_A SINE Alu 1 122 -11 278 261 14 0 chr3 25047893 25047962 -192989196 - MLT1J2 LTR MaLR -321 129 60 251 273 45 0 chr3 25049149 25049215 -192987943 + MIR SINE MIR 78 146 -62 1011 146 6 24 chr3 25049269 25049434 -192987724 + AluJo SINE Alu 1 162 -150 573 133 16 45 chr3 25049472 25049739 -192987419 + GA-rich Low_complexity Low_complexity 1 259 0 249 317 198 0 chr3 25049963 25050190 -192986968 - Charlie8 DNA MER1_type -2145 272 1 360 228 193 0 chr3 25050533 25050647 -192986511 + MIR3 SINE MIR 14 149 -59 312 227 173 18 chr3 25050840 25050950 -192986208 - L2 LINE L2 -4 3309 3183 818 178 0 6 chr3 25050961 25051130 -192986028 + GA-rich Low_complexity Low_complexity 1 168 0 406 236 109 0 chr3 25051130 25051240 -192985918 - MER63 DNA MER1_type -88 748 1 361 296 90 43 chr3 25051253 25051530 -192985628 - L2 LINE L2 -553 2761 2472 296 274 27 14 chr3 25051524 25051597 -192985561 - L2 LINE L2 -62 3210 3137 * 486 243 109 62 chr3 25052174 25052520 -192984638 + MLT1H LTR MaLR 66 549 0 327 83 100 17 chr3 25052633 25052693 -192984465 + LTR8A LTR ERV1 1 65 -662 462 223 107 0 chr3 25052699 25052802 -192984356 + MER50 LTR ERV1 8 121 -613 2004 153 0 0 chr3 25052818 25053112 -192984046 + AluJb SINE Alu 3 296 -16 4506 127 44 3 chr3 25053117 25053795 -192983363 + MER50 LTR ERV1 1 706 -28 306 82 41 0 chr3 25053797 25053846 -192983312 + L1MB4 LINE L1 6129 6179 -1 1569 200 47 75 chr3 25053853 25054409 -192982749 + L1ME1 LINE L1 1849 2388 -4008 660 160 0 0 chr3 25054427 25054521 -192982637 - AluS SINE Alu -218 95 2 1399 223 71 103 chr3 25054614 25054916 -192982242 + MER76 LTR ERV 24 334 -354 1752 57 80 69 chr3 25054916 25055178 -192981980 - AluSc SINE Alu -44 265 1 1399 223 71 103 chr3 25055178 25055535 -192981623 + MER76 LTR ERV 334 662 -26 5630 216 40 32 chr3 25055538 25056423 -192980735 + L1ME1 LINE L1 2397 3274 -2941 2137 120 3 13 chr3 25056423 25056739 -192980419 + AluSq SINE Alu 1 313 0 5630 216 40 32 chr3 25056739 25056978 -192980180 + L1ME1 LINE L1 3274 3510 -2705 1962 129 14 7 chr3 25056978 25057264 -192979894 + AluSx SINE Alu 1 288 -24 5630 216 40 32 chr3 25057264 25057807 -192979351 + L1ME1 LINE L1 3510 4077 -2138 2251 159 36 29 chr3 25057807 25058356 -192978802 + MLT2A2 LTR ERVL 1 554 0 5402 188 77 15 chr3 25058356 25059155 -192978003 + L1ME1 LINE L1 4073 4821 -1414 222 37 0 0 chr3 25059155 25059182 -192977976 + (TG)n Simple_repeat Simple_repeat 2 28 0 5402 188 77 15 chr3 25059182 25060411 -192976747 + L1ME1 LINE L1 4821 6226 -9 4765 132 26 25 chr3 25060420 25060528 -192976630 + L1 LINE L1 3952 4058 -2088 2591 58 0 22 chr3 25060528 25060841 -192976317 + AluY SINE Alu 1 306 -5 4765 132 26 25 chr3 25060841 25061586 -192975572 + L1 LINE L1 4058 4806 -1340 2013 153 68 60 chr3 25061586 25061933 -192975225 + Tigger2a DNA MER2_type 17 369 -2339 788 205 0 0 chr3 25061933 25062060 -192975098 + FLAM_A SINE Alu 1 127 -6 2013 153 68 60 chr3 25062060 25062125 -192975033 + Tigger2a DNA MER2_type 369 432 -2 822 224 102 8 chr3 25062131 25062444 -192974714 + L1MA9 LINE L1 5921 6290 -1 1567 133 136 45 chr3 25062982 25063312 -192973846 - MER46B DNA MER2_type -1 235 1 288 327 96 0 chr3 25063699 25063803 -192973355 - L2 LINE L2 -3 3269 3156 322 259 83 0 chr3 25063903 25064011 -192973147 - HAL1b LINE L1 -15 1333 1217 213 353 118 17 chr3 25064268 25064387 -192972771 + MIR SINE MIR 17 147 -61 201 244 0 0 chr3 25064449 25064490 -192972668 - L2 LINE L2 -94 3178 3138 1395 273 26 19 chr3 25064526 25064612 -192972546 + L2 LINE L2 2641 2725 -588 2754 88 40 3 chr3 25064612 25064963 -192972195 - THE1B LTR MaLR 0 364 1 1395 273 26 19 chr3 25064963 25065538 -192971620 + L2 LINE L2 2725 3309 -4 352 191 85 11 chr3 25065585 25065679 -192971479 - MER91C DNA MER1_type -37 103 3 22 0 0 0 chr3 25065720 25065742 -192971416 + AT_rich Low_complexity Low_complexity 1 22 0 622 281 99 53 chr3 25065751 25066001 -192971157 - L1ME4a LINE L1 -56 6065 5828 989 248 14 18 chr3 25066001 25066223 -192970935 + MER58A DNA MER1_type 1 221 -3 622 281 99 53 chr3 25066223 25066445 -192970713 - L1ME4a LINE L1 -293 5828 5571 2284 127 9 3 chr3 25067083 25067406 -192969752 - L1PB3 LINE L1 -1 6153 5829 189 0 0 0 chr3 25068347 25068368 -192968790 + (TTTTTA)n Simple_repeat Simple_repeat 6 26 0 297 143 0 0 chr3 25068789 25068831 -192968327 + MER5B DNA MER1_type 1 42 -136 2829 206 67 28 chr3 25068912 25069043 -192968115 + L1ME2 LINE L1 5455 5579 -755 2399 92 0 16 chr3 25069043 25069358 -192967800 + AluSg SINE Alu 1 310 0 2829 206 67 28 chr3 25069358 25069917 -192967241 + L1ME2 LINE L1 5579 6334 0 478 244 42 34 chr3 25069923 25070042 -192967116 + MER5B DNA MER1_type 59 178 0 2383 221 46 5 chr3 25070520 25071082 -192966076 + L1ME2 LINE L1 5571 6155 -9 3516 187 78 36 chr3 25071436 25072219 -192964939 + L1MB5 LINE L1 4864 5612 -562 5391 81 0 6 chr3 25072219 25072900 -192964258 + L1PA14 LINE L1 5484 6160 -1 3516 187 78 36 chr3 25072900 25073059 -192964099 + L1MB5 LINE L1 5612 5763 -411 2201 78 63 0 chr3 25073059 25073343 -192963815 + AluY SINE Alu 1 302 -9 3516 187 78 36 chr3 25073343 25073651 -192963507 + L1MB5 LINE L1 5763 6165 -9 483 254 123 41 chr3 25073779 25073999 -192963159 + MIR SINE MIR 7 244 -18 10100 180 50 10 chr3 25074102 25075939 -192961219 + L1MA4 LINE L1 13 1921 -5247 * 11426 176 30 78 chr3 25075928 25076188 -192960970 + L1MA4 LINE L1 2652 2923 -4244 2025 123 7 20 chr3 25076188 25076490 -192960668 + AluSg1 SINE Alu 1 298 -11 11426 176 30 78 chr3 25076490 25079493 -192957665 + L1MA4 LINE L1 2923 5794 -1373 3487 133 27 21 chr3 25079493 25080118 -192957040 + L1MA4 LINE L1 6689 7318 -3 405 304 95 0 chr3 25080738 25080886 -192956272 - MIR SINE MIR -48 214 53 243 122 49 0 chr3 25080927 25080968 -192956190 + L1ME LINE L1 5681 5723 -447 24 53 0 0 chr3 25080985 25081023 -192956135 + AT_rich Low_complexity Low_complexity 1 38 0 375 256 81 56 chr3 25081996 25082156 -192955002 + MER5A DNA MER1_type 1 164 -25 181 317 0 0 chr3 25082848 25082889 -192954269 - L3b LINE CR1 -90 1493 1453 215 206 29 0 chr3 25084141 25084209 -192952949 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1576 184 10 36 chr3 25087828 25088132 -192949026 + AluJo SINE Alu 1 296 -16 2702 166 74 19 chr3 25088497 25089093 -192948065 + L1MB8 LINE L1 5545 6173 -5 201 326 122 44 chr3 25089169 25089350 -192947808 - MIR3 SINE MIR -11 197 3 2131 127 0 13 chr3 25089481 25089781 -192947377 - AluJb SINE Alu -16 296 1 2045 124 0 38 chr3 25090324 25090639 -192946519 + AluSx SINE Alu 3 305 -7 654 137 0 0 chr3 25091418 25091520 -192945638 - AluJ/FLAM SINE Alu -210 102 1 21 57 0 0 chr3 25091658 25091693 -192945465 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 25093460 25093498 -192943660 + AT_rich Low_complexity Low_complexity 1 38 0 600 319 114 33 chr3 25094379 25094740 -192942418 + L3 LINE CR1 1117 1506 -71 32 43 0 0 chr3 25096706 25096752 -192940406 + AT_rich Low_complexity Low_complexity 1 46 0 2346 71 10 0 chr3 25096835 25097130 -192940028 - AluSp SINE Alu -15 298 1 180 111 0 0 chr3 25098687 25098714 -192938444 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 850 213 77 19 chr3 25098908 25099115 -192938043 + MER20 DNA MER1_type 1 219 0 292 268 61 0 chr3 25099191 25099273 -192937885 + MIR3 SINE MIR 109 195 -13 337 285 124 54 chr3 25100751 25100937 -192936221 + L1ME4a LINE L1 3913 4111 -2035 360 324 96 36 chr3 25100985 25101235 -192935923 + L1ME4a LINE L1 5333 5597 -2211 280 111 0 0 chr3 25101235 25101271 -192935887 - tRNA-Asp-GAC tRNA tRNA -38 37 2 309 215 25 83 chr3 25101307 25101398 -192935760 + L1ME4a LINE L1 5616 5700 -421 2043 112 10 10 chr3 25101398 25101693 -192935465 - AluSx SINE Alu -17 295 1 309 215 25 83 chr3 25101693 25101722 -192935436 + L1ME4a LINE L1 5700 5729 -392 244 250 154 32 chr3 25101810 25102030 -192935128 + L1ME4a LINE L1 5872 6118 -3 284 211 10 39 chr3 25102807 25102911 -192934247 + G-rich Low_complexity Low_complexity 1 101 0 331 274 120 17 chr3 25104004 25104121 -192933037 - L2 LINE L2 -1 3312 3184 751 272 93 102 chr3 25104362 25104571 -192932587 + L1MEd LINE L1 14 223 -5896 326 235 184 20 chr3 25104571 25104669 -192932489 - MER81 DNA DNA 0 114 1 751 272 93 102 chr3 25104669 25105166 -192931992 + L1MEd LINE L1 223 714 -5405 180 0 0 0 chr3 25105318 25105338 -192931820 + (TC)n Simple_repeat Simple_repeat 2 21 0 346 0 47 81 chr3 25105353 25105439 -192931719 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 2291 70 0 14 chr3 25105444 25105729 -192931429 - AluY SINE Alu -26 285 5 390 276 160 27 chr3 25105989 25106304 -192930854 - L1M4c LINE L1 -868 1875 1514 1833 168 0 3 chr3 25107187 25107478 -192929680 + AluJb SINE Alu 7 296 -16 530 279 93 0 chr3 25107528 25107623 -192929535 + MER5B DNA MER1_type 22 107 -71 198 0 0 0 chr3 25107623 25107645 -192929513 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 252 0 0 0 chr3 25107644 25107672 -192929486 + (TA)n Simple_repeat Simple_repeat 1 28 0 530 279 93 0 chr3 25107645 25107716 -192929442 + MER5B DNA MER1_type 107 174 -4 574 205 193 0 chr3 25107731 25107883 -192929275 + MER5A DNA MER1_type 4 189 0 1070 287 92 27 chr3 25107957 25108361 -192928797 + LTR67 LTR ERVL 112 541 -16 951 251 62 13 chr3 25109104 25109331 -192927827 - MIR SINE MIR -22 240 3 1840 190 11 16 chr3 25109440 25109803 -192927355 + MLT1A1 LTR MaLR 3 363 -2 2107 134 51 24 chr3 25109807 25110180 -192926978 + MLT1A1-int LTR MaLR 6 388 -1347 780 178 8 0 chr3 25111082 25111211 -192925947 - FLAM_A SINE Alu -2 131 2 635 309 60 36 chr3 25111252 25111782 -192925376 - L1ME LINE L1 -342 5822 5280 2127 123 0 10 chr3 25111797 25112098 -192925060 - AluSx SINE Alu -14 298 1 1532 189 3 53 chr3 25113042 25113246 -192923912 - AluJo SINE Alu -10 302 89 2059 143 35 27 chr3 25113246 25113618 -192923540 + THE1C LTR MaLR 1 375 0 10295 110 23 33 chr3 25113618 25115214 -192921944 + THE1C-int LTR MaLR 1 1580 0 2268 125 16 26 chr3 25115214 25115591 -192921567 + THE1C LTR MaLR 1 373 -2 1532 189 3 53 chr3 25115591 25115702 -192921456 - AluJo SINE Alu -220 92 1 361 233 86 35 chr3 25116274 25116390 -192920768 + MIR SINE MIR 49 170 -92 241 213 16 16 chr3 25116569 25116630 -192920528 - MLT1L LTR MaLR -5 610 550 449 247 217 72 chr3 25116821 25117056 -192920102 - MLT1L LTR MaLR -338 277 9 1905 143 0 10 chr3 25117560 25117853 -192919305 - AluJb SINE Alu -22 290 1 277 204 37 68 chr3 25118025 25118187 -192918971 + L1ME4a LINE L1 5965 6121 0 22 0 0 0 chr3 25118934 25118956 -192918202 + AT_rich Low_complexity Low_complexity 1 22 0 289 226 83 12 chr3 25119560 25119644 -192917514 - MLT1J LTR MaLR -418 93 4 320 331 62 0 chr3 25119769 25119899 -192917259 + MIR3 SINE MIR 59 196 -12 6322 145 21 29 chr3 25121458 25121999 -192915159 + L1MA3 LINE L1 3988 4532 -1773 1931 100 86 0 chr3 25121999 25122291 -192914867 + AluSp SINE Alu 1 315 0 6322 145 21 29 chr3 25122291 25123588 -192913570 + L1MA3 LINE L1 4532 5782 -523 2232 101 0 55 chr3 25123588 25123916 -192913242 + AluSg SINE Alu 1 310 0 6322 145 21 29 chr3 25123916 25124434 -192912724 + L1MA3 LINE L1 5782 6303 -2 409 302 108 74 chr3 25125089 25125467 -192911691 + MLT1L LTR MaLR 225 615 0 918 221 89 36 chr3 25126209 25126490 -192910668 + MLT1I LTR MaLR 108 403 -6 2335 162 81 39 chr3 25127518 25128037 -192909121 + L1MB7 LINE L1 5628 6168 -16 658 235 52 13 chr3 25128998 25129151 -192908007 - MLT1I LTR MaLR -247 162 4 1268 186 73 7 chr3 25129163 25129464 -192907694 - MER33 DNA MER1_type -3 321 1 30 45 0 0 chr3 25129533 25129577 -192907581 + AT_rich Low_complexity Low_complexity 1 44 0 388 296 0 9 chr3 25129728 25129836 -192907322 + MIR3 SINE MIR 95 201 -7 2190 123 10 0 chr3 25130907 25131209 -192905949 + AluY SINE Alu 1 305 -6 661 226 65 6 chr3 25132228 25132396 -192904762 + MIR SINE MIR 85 262 0 479 202 42 17 chr3 25132535 25132654 -192904504 - L1MC5 LINE L1 -34 7927 7806 353 293 26 9 chr3 25132692 25132808 -192904350 - L1MB7 LINE L1 -11 6173 6056 364 286 137 31 chr3 25133501 25133662 -192903496 + MIR SINE MIR 79 256 -6 438 232 0 40 chr3 25133696 25133795 -192903363 - LTR16A1 LTR ERVL 0 457 363 795 146 58 102 chr3 25133795 25134001 -192903157 - L1MB8 LINE L1 -96 6082 5886 * 1191 214 0 0 chr3 25133992 25134230 -192902928 - L1MB7 LINE L1 -253 5925 5688 1077 225 93 31 chr3 25134256 25134611 -192902547 - LTR16A1 LTR ERVL -80 377 1 2422 70 3 26 chr3 25135105 25135417 -192901741 - AluY SINE Alu -6 305 1 363 263 30 10 chr3 25135555 25135654 -192901504 + MIR SINE MIR 40 140 -68 2736 206 25 9 chr3 25136230 25136792 -192900366 - L1MC4a LINE L1 0 7808 7238 495 229 122 15 chr3 25136887 25137018 -192900140 - L2 LINE L2 0 3313 3169 1631 173 74 6 chr3 25137193 25137557 -192899601 - MER114 LTR ERV -259 389 1 619 276 57 10 chr3 25138120 25138312 -192898846 - MIR SINE MIR -11 251 51 2448 69 0 13 chr3 25138645 25138948 -192898210 - AluY SINE Alu -12 299 1 445 188 71 9 chr3 25139177 25139289 -192897869 - MIR SINE MIR -40 222 104 981 223 33 83 chr3 25139297 25139730 -192897428 - MLT1B LTR MaLR 0 390 1 2150 134 47 19 chr3 25139739 25140104 -192897054 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr3 25140616 25140640 -192896518 + AT_rich Low_complexity Low_complexity 1 24 0 1748 120 11 22 chr3 25140644 25140920 -192896238 + AluSp SINE Alu 41 313 0 301 304 0 0 chr3 25141437 25141516 -192895642 - L2 LINE L2 -6 3307 3229 1874 201 39 87 chr3 25141680 25142183 -192894975 + MLT2B1 LTR ERVL 1 478 -42 501 17 0 0 chr3 25142183 25142241 -192894917 + (CA)n Simple_repeat Simple_repeat 2 59 0 1874 201 39 87 chr3 25142241 25142275 -192894883 + MLT2B1 LTR ERVL 478 512 -8 2476 239 55 44 chr3 25142299 25142767 -192894391 + MLT2F LTR ERVL 1 479 -184 1213 189 28 0 chr3 25142767 25142979 -192894179 - MER20 DNA MER1_type -1 218 1 2476 239 55 44 chr3 25142979 25143164 -192893994 + MLT2F LTR ERVL 479 661 -2 505 348 116 23 chr3 25143780 25144288 -192892870 - L2 LINE L2 -19 3294 2733 2042 255 96 7 chr3 25144407 25145004 -192892154 - L2 LINE L2 -344 2970 2321 383 286 17 8 chr3 25145029 25145148 -192892010 + MER34 LTR ERV1 7 126 -416 * 734 221 128 42 chr3 25145119 25145528 -192891630 + LTR48 LTR ERV1 140 780 -7 511 81 14 0 chr3 25145672 25145746 -192891412 - MLT2A2 LTR ERVL 0 453 379 891 234 24 13 chr3 25145833 25146150 -192891008 - MLT2B3 LTR ERVL -54 500 184 2526 131 10 22 chr3 25146151 25146564 -192890594 - L1P LINE L1 -952 5194 4787 7890 156 56 92 chr3 25146570 25148600 -192888558 + LTR48B-int LTR ERV1 4157 6111 -220 2531 47 0 35 chr3 25148600 25148918 -192888240 - AluY SINE Alu -4 307 1 7890 156 56 92 chr3 25148918 25148951 -192888207 + LTR48B-int LTR ERV1 6111 6144 -187 629 231 152 46 chr3 25149050 25149530 -192887628 + LTR48B LTR ERV1 1 633 -11 3192 247 181 16 chr3 25149537 25150728 -192886430 - L2 LINE L2 -1016 2298 912 1830 192 63 63 chr3 25150733 25151227 -192885931 + MLT1D LTR MaLR 5 498 -7 2210 110 41 9 chr3 25151231 25151576 -192885582 - MER46B DNA MER2_type 0 236 6 277 202 71 12 chr3 25151511 25151595 -192885563 + MER46A DNA MER2_type 75 163 -73 * 242 261 33 43 chr3 25151641 25151733 -192885425 - L2 LINE L2 -2477 837 747 317 264 135 20 chr3 25152608 25152756 -192884402 + MIR SINE MIR 79 243 -19 1001 192 0 0 chr3 25153077 25153249 -192883909 - MER3 DNA MER1_type -11 198 27 207 224 155 0 chr3 25153554 25153612 -192883546 - L2 LINE L2 -1 3312 3246 833 246 97 14 chr3 25153667 25154085 -192883073 - L2 LINE L2 -185 3128 2677 1223 219 34 24 chr3 25154122 25154434 -192882724 - MER39 LTR ERV1 -2 687 393 441 163 38 0 chr3 25154445 25154525 -192882633 + MLT1A1 LTR MaLR 3 85 -280 1293 179 0 18 chr3 25154527 25154745 -192882413 + AluJb SINE Alu 5 218 -94 1026 131 11 0 chr3 25154745 25154920 -192882238 - MSTA-int LTR MaLR -1474 177 1 2714 135 51 17 chr3 25154920 25155334 -192881824 - MSTA LTR MaLR 0 428 1 3507 153 39 22 chr3 25155334 25155970 -192881188 + Tigger2 DNA MER2_type 2072 2718 0 664 283 49 29 chr3 25157048 25157292 -192879866 + MIR SINE MIR 14 262 0 1536 113 4 13 chr3 25157298 25157529 -192879629 - MER39 LTR ERV1 -5 702 474 3275 118 63 44 chr3 25157529 25158098 -192879060 + MER4D LTR ERV1 1 580 -323 229 207 138 17 chr3 25158085 25158143 -192879015 - MER39 LTR ERV1 -319 388 324 * 1285 171 147 11 chr3 25158390 25158780 -192878378 + MER39 LTR ERV1 1 432 -221 2396 153 138 4 chr3 25158780 25159231 -192877927 - MER4D LTR ERV1 0 903 393 6466 100 17 10 chr3 25159235 25160027 -192877131 + L1PA16 LINE L1 5105 5906 -260 2808 110 11 3 chr3 25160027 25160399 -192876759 + THE1C LTR MaLR 1 375 0 6466 100 17 10 chr3 25160399 25160661 -192876497 + L1PA16 LINE L1 5906 6165 -1 248 212 222 0 chr3 25160819 25160918 -192876240 + MIR SINE MIR 118 238 -24 372 282 51 8 chr3 25161111 25161228 -192875930 - MIR3 SINE MIR -6 202 81 1927 130 3 7 chr3 25161360 25161691 -192875467 + AluY SINE Alu 1 330 0 1790 203 68 60 chr3 25162326 25162872 -192874286 + MER34C LTR ERV1 36 585 0 226 299 29 51 chr3 25162872 25163009 -192874149 - MIR SINE MIR -116 146 13 2455 86 0 0 chr3 25163730 25164031 -192873127 - AluSq SINE Alu -12 301 1 1813 187 50 22 chr3 25164463 25164827 -192872331 + MLT1A2 LTR MaLR 1 374 0 1028 256 47 18 chr3 25165120 25165397 -192871761 + MLT1I LTR MaLR 125 409 0 398 266 0 11 chr3 25165420 25165514 -192871644 - L2 LINE L2 -1 3271 3179 832 181 67 0 chr3 25165758 25165907 -192871251 + MER5A DNA MER1_type 1 159 -30 303 273 152 15 chr3 25165791 25165923 -192871235 - MER5A DNA MER1_type -23 166 17 * 399 295 98 36 chr3 25166743 25166967 -192870191 - MIR SINE MIR -12 250 13 1166 243 141 17 chr3 25167621 25167983 -192869175 - MLT1I LTR MaLR -1 408 2 322 293 68 8 chr3 25168169 25168302 -192868856 - MIR SINE MIR -20 242 102 382 219 41 41 chr3 25168388 25168511 -192868647 + MER77 LTR ERV1 90 212 -393 689 111 0 10 chr3 25168679 25168778 -192868380 + MER4A LTR ERV1 1 98 -566 1822 130 9 34 chr3 25168778 25169132 -192868026 + MER4A LTR ERV1 261 664 0 13432 122 133 92 chr3 25169135 25172672 -192864486 + MER4A-int LTR ERV1 1 3681 -2917 12916 98 53 11 chr3 25172671 25174660 -192862498 + MER4A-int LTR ERV1 3837 5908 -690 * 30511 34 3 1 chr3 25174660 25180801 -192856357 + L1PA4 LINE L1 1 6155 0 4315 104 51 18 chr3 25180802 25181484 -192855674 + MER4A-int LTR ERV1 5892 6596 -2 508 189 0 11 chr3 25181492 25181587 -192855571 + MER4A LTR ERV1 5 98 -566 1749 147 3 24 chr3 25181587 25181940 -192855218 + MER4A LTR ERV1 261 664 0 511 230 44 122 chr3 25181961 25182322 -192854836 + MER77 LTR ERV1 322 633 -4 276 268 14 0 chr3 25182382 25182453 -192854705 - MIR SINE MIR -150 112 41 1016 178 89 15 chr3 25182586 25182788 -192854370 + MER20 DNA MER1_type 2 218 -1 1981 112 47 78 chr3 25182840 25183225 -192853933 - THE1C LTR MaLR 0 375 3 2605 164 83 34 chr3 25183385 25183930 -192853228 + MER39 LTR ERV1 1 629 -78 3463 86 38 14 chr3 25183930 25184430 -192852728 - L1PA8 LINE L1 -10 6162 5651 2605 164 83 34 chr3 25184430 25184514 -192852644 + MER39 LTR ERV1 629 707 0 1250 255 154 17 chr3 25184554 25184962 -192852196 - LTR16B LTR ERVL 0 464 1 2090 124 79 19 chr3 25185179 25185558 -192851600 + MER34C LTR ERV1 7 408 -177 335 284 17 17 chr3 25186896 25187012 -192850146 - L2 LINE L2 -1 3312 3197 486 227 58 19 chr3 25187511 25187665 -192849493 - LTR16C LTR ERVL -4 487 328 1563 232 102 9 chr3 25188906 25189355 -192847803 + MER90 LTR ERV1 119 609 -5 895 294 88 26 chr3 25189625 25190010 -192847148 + LTR16C LTR ERVL 83 491 0 1626 171 56 0 chr3 25190050 25190222 -192846936 - AluJb SINE Alu 0 308 113 251 27 0 27 chr3 25190222 25190259 -192846899 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1626 171 56 0 chr3 25190259 25190379 -192846779 - AluJb SINE Alu -195 113 1 238 333 90 32 chr3 25190432 25190578 -192846580 + MLT1K LTR MaLR 169 330 -258 1149 251 144 22 chr3 25190578 25191007 -192846151 + MLT1H1 LTR MaLR 3 501 -54 2289 109 3 0 chr3 25191007 25191311 -192845847 + AluSx SINE Alu 1 305 -7 1149 251 144 22 chr3 25191311 25191374 -192845784 + MLT1H1 LTR MaLR 501 555 0 238 333 90 32 chr3 25191374 25191416 -192845742 + MLT1K LTR MaLR 330 368 -220 414 302 107 67 chr3 25191579 25191999 -192845159 - L2 LINE L2 -9 3263 2827 23 33 0 0 chr3 25192556 25192586 -192844572 + AT_rich Low_complexity Low_complexity 1 30 0 783 272 63 48 chr3 25193635 25194029 -192843129 + MLT1L LTR MaLR 216 615 0 261 257 45 128 chr3 25194144 25194323 -192842835 + MIR SINE MIR 17 180 -82 22 35 0 0 chr3 25196080 25196109 -192841049 + AT_rich Low_complexity Low_complexity 1 29 0 931 193 17 84 chr3 25196341 25196579 -192840579 + MER58A DNA MER1_type 1 222 -2 2395 97 0 0 chr3 25196719 25197028 -192840130 - AluSx SINE Alu -3 309 1 2288 97 17 3 chr3 25197628 25197927 -192839231 + AluY SINE Alu 1 303 -8 1624 236 49 47 chr3 25198160 25198567 -192838591 - LTR16C LTR ERVL -10 481 74 2447 90 3 3 chr3 25199456 25199768 -192837390 + AluSx SINE Alu 1 312 0 494 219 174 7 chr3 25199938 25200093 -192837065 + MER5A DNA MER1_type 9 189 0 543 53 0 0 chr3 25200351 25200426 -192836732 + (TA)n Simple_repeat Simple_repeat 2 76 0 926 126 0 66 chr3 25200446 25200597 -192836561 - AluJo SINE Alu -171 141 1 213 121 0 0 chr3 25201089 25201122 -192836036 + (GA)n Simple_repeat Simple_repeat 1 33 0 3201 46 5 51 chr3 25201553 25201985 -192835173 - L1PA8 LINE L1 -10 6162 5751 24 0 0 0 chr3 25203150 25203174 -192833984 + AT_rich Low_complexity Low_complexity 1 24 0 971 175 45 35 chr3 25203412 25203612 -192833546 + MER3 DNA MER1_type 8 209 0 293 200 0 0 chr3 25203569 25203619 -192833539 - MER3 DNA MER1_type -119 90 41 * 2292 119 0 0 chr3 25204216 25204518 -192832640 - AluSx SINE Alu -9 303 2 2186 116 139 16 chr3 25206154 25206535 -192830623 + MSTA LTR MaLR 1 428 0 1586 154 16 96 chr3 25206538 25206812 -192830346 - L1MB7 LINE L1 -38 6146 5852 1850 121 0 43 chr3 25206812 25207093 -192830065 - AluSx SINE Alu -14 298 30 1586 154 16 96 chr3 25207093 25207149 -192830009 - L1MB7 LINE L1 -332 5852 5793 2196 115 6 16 chr3 25207149 25207462 -192829696 - AluSg SINE Alu 0 310 1 1586 154 16 96 chr3 25207462 25207475 -192829683 - L1MB7 LINE L1 -391 5793 5781 2451 147 29 44 chr3 25207475 25207543 -192829615 - L1MB2 LINE L1 -7 6164 6097 2236 147 86 15 chr3 25207543 25207939 -192829219 + MSTB LTR MaLR 1 424 -2 2332 94 3 3 chr3 25207939 25208246 -192828912 + AluSq SINE Alu 1 307 -6 2451 147 29 44 chr3 25208246 25208652 -192828506 - L1MB2 LINE L1 -72 6099 5696 1586 154 16 96 chr3 25208652 25208683 -192828475 - L1MB7 LINE L1 -402 5782 5800 1924 156 3 3 chr3 25208883 25209184 -192827974 + AluSx SINE Alu 1 301 -11 1716 253 60 61 chr3 25210652 25210866 -192826292 - L1MEd LINE L1 -5351 768 555 856 237 17 11 chr3 25210866 25211043 -192826115 + MER45A DNA AcHobo 1 178 0 1716 253 60 61 chr3 25211043 25211596 -192825562 - L1MEd LINE L1 -5564 555 2 214 191 0 0 chr3 25211665 25211707 -192825451 + T-rich Low_complexity Low_complexity 1 42 0 301 288 90 9 chr3 25211737 25211848 -192825310 - MIR SINE MIR -112 150 31 220 341 33 0 chr3 25212567 25212658 -192824500 + MIR3 SINE MIR 112 205 -3 2242 99 20 3 chr3 25213768 25214061 -192823097 + AluSx SINE Alu 1 298 -14 594 0 0 0 chr3 25264063 25264129 -192773029 + (TA)n Simple_repeat Simple_repeat 2 67 0 519 107 0 0 chr3 25264129 25264204 -192772954 - AluY SINE Alu -27 284 210 710 283 78 38 chr3 25264216 25264735 -192772423 + L1ME4a LINE L1 3875 4432 -1714 761 208 0 0 chr3 25264735 25264865 -192772293 + FLAM_A SINE Alu 1 130 -3 710 283 78 38 chr3 25264865 25265060 -192772098 + L1ME4a LINE L1 4432 4618 -1528 1111 110 6 0 chr3 25265079 25265243 -192771915 - L1MA1 LINE L1 -7 6295 6131 579 277 65 9 chr3 25265245 25265718 -192771440 + L1ME4a LINE L1 4967 5462 -700 3569 47 7 2 chr3 25265750 25266196 -192770962 - LTR7 LTR ERV1 -2 448 1 2372 84 39 16 chr3 25266196 25266577 -192770581 - HERVH LTR ERV1 0 7713 7324 1328 120 18 5 chr3 25266577 25266794 -192770364 - HERVH LTR ERV1 -1894 5819 5600 4161 137 0 1 chr3 25266795 25267458 -192769700 - HERVH LTR ERV1 -2564 5149 4488 3112 121 4 6 chr3 25267460 25267963 -192769195 - HERVH LTR ERV1 -3720 3993 3492 841 149 20 0 chr3 25267953 25268101 -192769057 - HERVH LTR ERV1 -4423 3290 3140 * 19235 89 11 27 chr3 25268095 25271131 -192766027 - HERVH LTR ERV1 -4726 2987 1 3234 42 10 105 chr3 25271133 25271628 -192765530 - LTR7 LTR ERV1 -2 448 1 903 284 40 49 chr3 25271634 25272081 -192765077 + L1ME4a LINE L1 5495 5937 -233 529 72 0 24 chr3 25272083 25272166 -192764992 + L1MA4 LINE L1 6214 6294 -6 3863 153 16 46 chr3 25272248 25273076 -192764082 + L1MB8 LINE L1 5376 6178 0 27 0 0 0 chr3 25273258 25273285 -192763873 + AT_rich Low_complexity Low_complexity 1 27 0 375 271 7 50 chr3 25273387 25273527 -192763631 + L1ME LINE L1 5506 5639 -482 908 258 98 48 chr3 25273528 25273947 -192763211 + MLT1H LTR MaLR 98 537 -12 285 267 20 0 chr3 25273957 25274058 -192763100 + L1ME LINE L1 5647 5749 -372 736 276 204 28 chr3 25274060 25274560 -192762598 + MLT1K LTR MaLR 1 588 0 4352 191 14 5 chr3 25275203 25276437 -192760721 + L1MB5 LINE L1 4903 6147 -27 270 0 0 0 chr3 25276450 25276480 -192760678 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1111 181 100 9 chr3 25276490 25276700 -192760458 + AluJo SINE Alu 83 311 -1 724 184 0 0 chr3 25276709 25276818 -192760340 - FLAM_A SINE Alu -33 109 1 297 239 55 9 chr3 25276965 25277074 -192760084 + L1ME4a LINE L1 6007 6120 -1 292 259 44 37 chr3 25277120 25277255 -192759903 + MLT1I LTR MaLR 21 155 -254 862 241 98 8 chr3 25277259 25277504 -192759654 - MLT1G1 LTR MaLR -7 588 322 1596 166 23 13 chr3 25278645 25278953 -192758205 + L1M3 LINE L1 5329 5639 -541 * 29792 92 13 9 chr3 25278949 25281603 -192755555 - L1PA8 LINE L1 0 6487 3847 269 26 26 0 chr3 25281603 25281641 -192755517 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 29792 92 13 9 chr3 25281641 25284693 -192752465 - L1PA8 LINE L1 -2640 3847 749 722 45 0 0 chr3 25284702 25284791 -192752367 + L1P3 LINE L1 5539 5627 -545 29 0 0 0 chr3 25285219 25285248 -192751910 + AT_rich Low_complexity Low_complexity 1 29 0 652 126 0 0 chr3 25286687 25286790 -192750368 - AluSp/q SINE Alu -1 312 210 1220 179 44 74 chr3 25287627 25287990 -192749168 - MER4C-int LTR ERV1 -1607 3273 2922 354 225 49 28 chr3 25288046 25288188 -192748970 - MER4C-int LTR ERV1 -1937 2943 2799 924 206 96 9 chr3 25288190 25288409 -192748749 + LTR49-int LTR ERV1 3300 3537 -2794 2993 158 52 80 chr3 25288441 25289152 -192748006 + LTR8 LTR ERV1 1 691 0 276 254 0 14 chr3 25289153 25289224 -192747934 - MER4C-int LTR ERV1 -3930 2401 2332 355 210 0 25 chr3 25289261 25289342 -192747816 - MER4C-int LTR ERV1 -4187 2144 2066 316 129 48 0 chr3 25289343 25289405 -192747753 - MER4C-int LTR ERV1 -4423 1908 1844 1067 156 81 137 chr3 25289451 25289823 -192747335 - MER4C-int LTR ERV1 -4609 1722 1372 410 180 57 41 chr3 25289913 25290035 -192747123 - MER4C-int LTR ERV1 -4918 1413 1290 254 213 197 0 chr3 25290042 25290103 -192747055 - tRNA-Glu-GAG tRNA tRNA 0 75 3 575 122 114 15 chr3 25290174 25290305 -192746853 - MER4C-int LTR ERV1 -5194 1137 994 200 128 0 26 chr3 25290499 25290538 -192746620 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 879 201 120 28 chr3 25290567 25290945 -192746213 - MER4C-int LTR ERV1 -6110 488 1 934 210 46 118 chr3 25290948 25291449 -192745709 - MER4C LTR ERV1 0 465 1 1103 214 5 0 chr3 25291449 25291659 -192745499 + LTR39 LTR ERV1 572 782 -1 389 229 31 104 chr3 25291875 25292067 -192745091 - MER5B DNA MER1_type 0 178 1 295 207 60 9 chr3 25293060 25293176 -192743982 - L1MC4 LINE L1 -1 8041 7920 2471 162 22 29 chr3 25293333 25293822 -192743336 - MLT1D LTR MaLR -8 497 12 979 236 65 87 chr3 25293914 25294363 -192742795 - L2 LINE L2 -1136 2178 1740 508 281 82 0 chr3 25295487 25295622 -192741536 + L3 LINE CR1 1061 1206 -371 246 349 31 11 chr3 25296277 25296538 -192740620 + L1M4 LINE L1 4904 5168 -978 789 325 63 21 chr3 25296784 25297163 -192739995 + LTR16C LTR ERVL 97 491 0 359 328 81 56 chr3 25297163 25297250 -192739908 + L1M4 LINE L1 5332 5415 -755 2445 84 0 0 chr3 25297250 25297558 -192739600 + AluY SINE Alu 1 308 -3 359 328 81 56 chr3 25297558 25297790 -192739368 + L1M4 LINE L1 5415 5659 -511 3072 276 158 28 chr3 25297837 25299651 -192737507 + L2 LINE L2 1261 3313 0 229 281 36 61 chr3 25299683 25299879 -192737279 + L1M4 LINE L1 5695 5885 -293 26 50 0 0 chr3 25299952 25299992 -192737166 + AT_rich Low_complexity Low_complexity 1 40 0 390 272 22 11 chr3 25300471 25300563 -192736595 - MIR SINE MIR -162 100 8 235 254 16 16 chr3 25300846 25300909 -192736249 - L2 LINE L2 -31 3241 3179 2805 10 0 0 chr3 25301159 25301466 -192735692 + AluYa5 SINE Alu 1 307 -4 3557 91 16 0 chr3 25301892 25302400 -192734758 - L1PA13 LINE L1 0 6814 6299 538 35 306 0 chr3 25302400 25302485 -192734673 - L1PA8 LINE L1 -28 6144 6034 20192 183 33 11 chr3 25302585 25308242 -192728916 - L1PA13 LINE L1 -550 6269 339 11419 144 7 20 chr3 25308240 25310118 -192727040 - L1PA12 LINE L1 -5577 2004 152 * 2035 147 3 0 chr3 25310692 25310992 -192726166 + AluJb SINE Alu 1 301 -11 272 163 20 0 chr3 25311233 25311282 -192725876 - MLT1L LTR MaLR -347 268 219 947 194 77 28 chr3 25311667 25311914 -192725244 + MIR SINE MIR 4 262 0 21 36 0 0 chr3 25312012 25312040 -192725118 + AT_rich Low_complexity Low_complexity 1 28 0 192 267 13 93 chr3 25312260 25312335 -192724823 - MIR3 SINE MIR -51 157 89 1008 171 6 6 chr3 25312710 25312886 -192724272 - MER5B DNA MER1_type -2 176 1 254 390 0 0 chr3 25313726 25313862 -192723296 - MER117 DNA MER1_type -33 164 29 230 0 33 0 chr3 25313942 25313972 -192723186 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 289 224 206 19 chr3 25314002 25314109 -192723049 - L2 LINE L2 -38 3275 3149 256 325 77 0 chr3 25314713 25314830 -192722328 - L2 LINE L2 -491 2823 2698 369 0 0 0 chr3 25314891 25314932 -192722226 + (CA)n Simple_repeat Simple_repeat 2 42 0 339 165 0 51 chr3 25314959 25315038 -192722120 + MER53 DNA DNA 115 189 0 203 297 135 14 chr3 25315077 25315225 -192721933 - L2 LINE L2 -735 2579 2414 1669 174 2 84 chr3 25315673 25316076 -192721082 + MLT1A2 LTR MaLR 1 370 -4 1331 213 10 43 chr3 25316170 25316470 -192720688 - AluJo SINE Alu -22 290 1 2032 150 6 12 chr3 25316886 25317227 -192719931 - MER44D DNA MER2_type 0 609 1 328 273 189 96 chr3 25317234 25317743 -192719415 - MLT1K LTR MaLR -31 557 2 269 286 156 5 chr3 25317805 25318029 -192719129 + L1MC4a LINE L1 5672 5929 -1879 26 88 0 0 chr3 25318146 25318214 -192718944 + AT_rich Low_complexity Low_complexity 1 68 0 1106 187 18 7 chr3 25318215 25318488 -192718670 - L1M4 LINE L1 -914 5232 4957 1068 258 89 35 chr3 25318692 25319087 -192718071 + MER77 LTR ERV1 181 596 -9 1384 261 10 41 chr3 25319176 25319594 -192717564 + MER77-int LTR ERV1 2 406 -3785 358 362 7 0 chr3 25319599 25319737 -192717421 + MER77-int LTR ERV1 298 436 -3755 2298 104 0 3 chr3 25320284 25320581 -192716577 - AluSg SINE Alu -14 296 1 2481 141 57 5 chr3 25321384 25321823 -192715335 - MER31A LTR ERV1 -23 462 1 329 327 9 0 chr3 25322334 25322444 -192714714 - L2 LINE L2 0 3272 3162 313 55 0 0 chr3 25322500 25322555 -192714603 - L1MB4 LINE L1 0 6180 6126 2310 57 0 7 chr3 25322555 25322848 -192714310 - L1PA7 LINE L1 0 6154 5860 246 252 36 36 chr3 25322960 25323099 -192714059 - L1M4 LINE L1 -2112 4034 3896 327 171 0 0 chr3 25323132 25323202 -192713956 + AluY SINE Alu 210 279 -22 606 14 0 0 chr3 25323202 25323273 -192713885 + (TA)n Simple_repeat Simple_repeat 1 71 0 958 253 35 65 chr3 25323291 25323648 -192713510 - L1M4 LINE L1 -2299 3847 3516 887 233 0 0 chr3 25323648 25323811 -192713347 - FAM SINE Alu -12 163 1 958 253 35 65 chr3 25323811 25324082 -192713076 - L1M4 LINE L1 -2630 3516 3238 471 276 26 26 chr3 25324137 25324293 -192712865 - L1ME1 LINE L1 -89 6077 5922 1743 103 17 21 chr3 25324315 25324606 -192712552 - L1MA2 LINE L1 0 7723 7434 3369 142 10 9 chr3 25324609 25325154 -192712004 - L1MA2 LINE L1 -514 7209 6666 2291 118 131 8 chr3 25325154 25325535 -192711623 - MSTA LTR MaLR 0 428 1 3369 142 10 9 chr3 25325535 25325917 -192711241 - L1MA2 LINE L1 -1057 6666 6286 2179 153 48 15 chr3 25325918 25326318 -192710840 + MSTA LTR MaLR 2 414 -14 12724 166 24 12 chr3 25326322 25327970 -192709188 - L1MA2 LINE L1 -1279 6286 4578 2422 74 0 10 chr3 25327970 25328266 -192708892 - AluY SINE Alu -18 293 1 12724 166 24 12 chr3 25328266 25329655 -192707503 - L1MA2 LINE L1 -2987 4578 3208 * 13892 153 52 6 chr3 25329653 25332447 -192704711 - L1MA2 LINE L1 -4614 2951 158 370 192 33 68 chr3 25332447 25332604 -192704554 - L1MC3 LINE L1 -408 5936 -1415 2061 116 3 28 chr3 25332756 25333075 -192704083 - AluSx SINE Alu -1 311 1 13345 121 25 22 chr3 25333269 25335351 -192701807 - Tigger1 DNA MER2_type -2 2416 327 1218 222 32 64 chr3 25335351 25335555 -192701603 + PABL_B LTR ERV1 1 210 -457 2148 128 3 0 chr3 25335555 25335867 -192701291 - AluSp SINE Alu 0 313 1 1218 222 32 64 chr3 25335867 25336205 -192700953 + PABL_B LTR ERV1 210 667 0 37305 200 18 10 chr3 25336218 25337548 -192699610 + PABL_B-int LTR ERV1 23 1342 -5780 2382 94 3 0 chr3 25337548 25337845 -192699313 + AluSp SINE Alu 1 298 -15 37305 200 18 10 chr3 25337845 25343438 -192693720 + PABL_B-int LTR ERV1 1342 7058 -64 1254 216 42 52 chr3 25343526 25344054 -192693104 + PABL_B LTR ERV1 1 667 0 1631 176 67 10 chr3 25344054 25344366 -192692792 - Tigger1 DNA MER2_type -2088 330 1 953 318 73 19 chr3 25344431 25344843 -192692315 + MLT1J LTR MaLR 3 436 -75 6170 122 192 97 chr3 25345055 25346605 -192690553 + pTR5 LTR ERV1 741 2438 0 185 264 22 88 chr3 25346695 25346786 -192690372 - MIR3 SINE MIR -29 179 95 273 255 156 28 chr3 25346835 25346976 -192690182 + MIR SINE MIR 91 249 -13 196 270 0 68 chr3 25347660 25347734 -192689424 + L2 LINE L2 3240 3308 -5 1675 61 17 26 chr3 25347736 25347966 -192689192 + L1PA10 LINE L1 5937 6164 -4 1571 277 82 21 chr3 25348183 25348656 -192688502 - MLT1J LTR MaLR -2 509 8 539 291 36 31 chr3 25348935 25349131 -192688027 + L2 LINE L2 3117 3313 0 24974 49 9 0 chr3 25349468 25349902 -192687256 + L1PA5 LINE L1 2408 2837 -3317 2393 86 3 0 chr3 25349902 25350204 -192686954 + AluY SINE Alu 1 303 -8 24974 49 9 0 chr3 25350204 25353516 -192683642 + L1PA5 LINE L1 2837 6154 0 3003 192 144 8 chr3 25354770 25355472 -192681686 + LTR1B LTR ERV1 30 826 0 466 250 60 0 chr3 25355891 25356007 -192681151 + MER5C DNA MER1_type 2 124 -200 1117 148 44 0 chr3 25356183 25356365 -192680793 - MER21A LTR ERV1 -17 914 725 1612 173 77 14 chr3 25356380 25356906 -192680252 - MER21B LTR ERV1 -283 580 1 261 61 0 0 chr3 25357004 25357037 -192680121 + MER58 DNA MER1_type 2380 2412 -8 610 274 42 18 chr3 25357122 25357290 -192679868 - MIR SINE MIR -70 192 21 229 214 0 0 chr3 25357527 25357569 -192679589 - MER58 DNA MER1_type -2146 274 233 188 386 0 0 chr3 25357950 25358020 -192679138 - L2 LINE L2 0 3272 3203 1298 211 121 47 chr3 25358488 25358802 -192678356 - MSTD LTR MaLR -4 392 46 2436 80 0 10 chr3 25358802 25359116 -192678042 - AluY SINE Alu 0 311 1 1298 211 121 47 chr3 25359116 25359166 -192677992 - MSTD LTR MaLR -350 46 1 711 183 0 0 chr3 25359166 25359292 -192677866 - MSTD-int LTR MaLR 0 1735 1610 997 223 125 60 chr3 25359405 25359722 -192677436 - MSTD LTR MaLR -4 392 46 2571 70 0 6 chr3 25359722 25360035 -192677123 - AluY SINE Alu 0 311 1 997 223 125 60 chr3 25360035 25360085 -192677073 - MSTD LTR MaLR -350 46 1 6260 227 84 43 chr3 25360085 25360236 -192676922 - MLT1B-int LTR MaLR 0 1735 1592 1800 140 87 34 chr3 25360236 25360592 -192676566 + THE1C LTR MaLR 1 375 0 6260 227 84 43 chr3 25360592 25362102 -192675056 - MLT1B-int LTR MaLR -143 1592 6 816 128 16 8 chr3 25362110 25362235 -192674923 + THE1C LTR MaLR 250 375 0 240 259 17 0 chr3 25362285 25362343 -192674815 - MER81 DNA DNA 0 114 56 1769 250 53 50 chr3 25362419 25362963 -192674195 + MLT1H1 LTR MaLR 1 546 -9 2193 149 25 63 chr3 25363602 25364184 -192672974 + MER39 LTR ERV1 1 707 0 3496 200 103 43 chr3 25365542 25366531 -192670627 + L1MC4 LINE L1 6995 8042 0 1792 257 29 60 chr3 25366541 25367119 -192670039 + L1MC4a LINE L1 5193 5230 -916 2121 151 48 13 chr3 25367119 25367496 -192669662 - MLT1B LTR MaLR 0 390 1 1792 257 29 60 chr3 25367496 25367661 -192669497 + L1MC4a LINE L1 5230 5399 -747 261 83 0 0 chr3 25367672 25367708 -192669450 + (TG)n Simple_repeat Simple_repeat 2 37 0 230 279 0 23 chr3 25367708 25367794 -192669364 + (TA)n Simple_repeat Simple_repeat 2 85 0 519 260 115 72 chr3 25368124 25368364 -192668794 - MLT1L LTR MaLR -8 503 320 369 0 0 0 chr3 25368364 25368405 -192668753 + (CA)n Simple_repeat Simple_repeat 1 41 0 519 260 115 72 chr3 25368405 25368615 -192668543 - MLT1L LTR MaLR -191 320 120 1034 253 180 13 chr3 25369025 25369409 -192667749 - LTR16C LTR ERVL 0 491 44 536 261 43 74 chr3 25369421 25369651 -192667507 - LTR16C LTR ERVL -217 274 52 439 223 33 25 chr3 25369834 25369955 -192667203 - MIR SINE MIR -44 218 97 1270 303 20 15 chr3 25370440 25370843 -192666315 - MLT1I LTR MaLR -4 405 1 337 296 96 9 chr3 25371317 25371432 -192665726 - L2 LINE L2 -9 3263 3139 1573 236 149 2 chr3 25371444 25371872 -192665286 - MLT1J LTR MaLR 0 511 21 519 311 98 50 chr3 25371915 25372455 -192664703 - L2 LINE L2 -251 3021 2458 25 0 0 0 chr3 25372682 25372707 -192664451 + AT_rich Low_complexity Low_complexity 1 25 0 182 241 139 25 chr3 25373061 25373140 -192664018 - L2 LINE L2 -2 3270 3183 678 224 76 33 chr3 25374442 25374749 -192662409 - LTR16C LTR ERVL 0 491 81 536 286 60 16 chr3 25374831 25375016 -192662142 + MIR SINE MIR 70 262 0 192 284 121 79 chr3 25375068 25375258 -192661900 - MIR3 SINE MIR -6 202 5 298 215 182 8 chr3 25375326 25375447 -192661711 + MER117 DNA MER1_type 4 145 -52 3351 73 49 9 chr3 25375625 25376052 -192661106 + MLT2A1 LTR ERVL 1 444 0 798 328 48 7 chr3 25376261 25376800 -192660358 + L1M4 LINE L1 4547 5107 -1039 270 291 153 66 chr3 25376801 25377042 -192660116 - LTR16B LTR ERVL -202 262 1 1011 177 117 53 chr3 25377435 25377734 -192659424 + MLT1H LTR MaLR 48 365 -184 355 221 19 48 chr3 25377737 25377841 -192659317 + MLT1H LTR MaLR 495 595 0 183 340 0 0 chr3 25377910 25377960 -192659198 - L2 LINE L2 0 3272 3223 * 803 270 115 4 chr3 25377926 25378152 -192659006 - MIR SINE MIR -10 252 2 353 255 45 51 chr3 25378514 25378671 -192658487 - L2 LINE L2 0 3313 3158 419 0 20 0 chr3 25379449 25379500 -192657658 + (TG)n Simple_repeat Simple_repeat 2 53 0 421 273 62 0 chr3 25379681 25379809 -192657349 + MIR3 SINE MIR 10 145 -63 1147 227 9 0 chr3 25380292 25380508 -192656650 - MER20 DNA MER1_type 0 219 2 818 252 40 24 chr3 25380541 25380791 -192656367 - LTR16C LTR ERVL -14 477 224 229 209 60 30 chr3 25383452 25383519 -192653639 - L2 LINE L2 -18 3295 3227 613 244 40 23 chr3 25384278 25384454 -192652704 + MIR SINE MIR 84 262 0 21 0 0 0 chr3 25384564 25384585 -192652573 + AT_rich Low_complexity Low_complexity 1 21 0 428 258 81 30 chr3 25384638 25384900 -192652258 - MLT1H1 LTR MaLR -6 589 186 292 266 101 0 chr3 25385080 25385159 -192651999 - MIR SINE MIR -160 102 16 795 260 174 27 chr3 25385211 25385715 -192651443 - MLT1G LTR MaLR -38 552 1 4152 124 36 9 chr3 25385758 25386449 -192650709 - L1MC1 LINE L1 0 6333 5624 276 232 14 0 chr3 25386605 25386674 -192650484 - MER113 DNA MER1_type? -448 73 4 225 65 0 0 chr3 25386771 25386802 -192650356 + (TGG)n Simple_repeat Simple_repeat 1 31 0 2240 125 0 3 chr3 25388164 25388477 -192648681 - AluSx SINE Alu 0 312 1 25 0 0 0 chr3 25388723 25388748 -192648410 + AT_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr3 25389129 25389175 -192647983 + AT_rich Low_complexity Low_complexity 1 46 0 2847 204 27 15 chr3 25389698 25390359 -192646799 + L1MC3 LINE L1 7099 7767 -18 363 301 122 8 chr3 25390616 25390739 -192646419 - MIR3 SINE MIR -57 151 15 23 0 0 0 chr3 25391660 25391683 -192645475 + AT_rich Low_complexity Low_complexity 1 23 0 571 264 59 27 chr3 25391829 25392121 -192645037 - MLT1I LTR MaLR -2 407 73 236 317 17 0 chr3 25392234 25392294 -192644864 - L2 LINE L2 -55 3217 3157 204 40 0 0 chr3 25393042 25393067 -192644091 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1190 199 49 8 chr3 25393085 25393331 -192643827 + MIR SINE MIR 6 261 -1 622 260 173 5 chr3 25393435 25393643 -192643515 + MIR SINE MIR 4 246 -16 183 229 38 127 chr3 25393862 25394019 -192643139 - L2 LINE L2 -457 2857 2715 860 254 75 13 chr3 25394101 25394329 -192642829 - MIR SINE MIR 0 262 21 707 227 51 23 chr3 25394718 25394894 -192642264 + MIR SINE MIR 34 214 -48 2087 174 21 9 chr3 25394972 25395144 -192642014 - L1MA10 LINE L1 -3 6331 6163 198 0 0 0 chr3 25395144 25395166 -192641992 + (TG)n Simple_repeat Simple_repeat 2 23 0 2087 174 21 9 chr3 25395166 25395413 -192641745 - L1MA10 LINE L1 -171 6163 5907 858 184 0 19 chr3 25396638 25396796 -192640362 + MER5B DNA MER1_type 6 160 -18 826 258 43 19 chr3 25396796 25397005 -192640153 - MIR SINE MIR -34 228 15 302 291 57 28 chr3 25397446 25397587 -192639571 + MIR3 SINE MIR 12 156 -52 998 239 46 18 chr3 25397608 25397888 -192639270 + MER102b DNA MER1_type 34 321 -20 520 115 58 0 chr3 25398698 25398785 -192638373 - L1MB2 LINE L1 -8 6163 6072 299 299 18 69 chr3 25398910 25399127 -192638031 - L1MB2 LINE L1 -1971 5837 5632 749 248 135 9 chr3 25399254 25399476 -192637682 + MIR SINE MIR 13 262 0 812 188 0 0 chr3 25400298 25400431 -192636727 + FLAM_A SINE Alu 1 133 0 488 311 71 14 chr3 25400790 25401002 -192636156 - L2 LINE L2 -15 3298 3075 4083 208 85 31 chr3 25401031 25401555 -192635603 + L1MB7 LINE L1 4206 4700 -1519 2044 118 25 0 chr3 25401555 25401834 -192635324 - AluSx SINE Alu -26 286 1 4083 208 85 31 chr3 25401834 25403212 -192633946 + L1MB7 LINE L1 4700 6219 0 246 62 0 0 chr3 25403212 25403244 -192633914 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 697 301 94 37 chr3 25403288 25403794 -192633364 - L2 LINE L2 -189 3124 2601 350 338 8 60 chr3 25404019 25404152 -192633006 + L2 LINE L2 3127 3252 -20 402 151 27 14 chr3 25404270 25404343 -192632815 + MLT1J2 LTR MaLR 67 140 -310 349 179 0 83 chr3 25405556 25405640 -192631518 - MER69 DNA AcHobo -100 77 1 306 254 67 52 chr3 25405733 25405867 -192631291 - MIR SINE MIR -76 186 51 183 80 0 0 chr3 25406301 25406326 -192630832 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 212 286 0 48 chr3 25406327 25406390 -192630768 - L2 LINE L2 -15 3257 3198 1030 155 7 0 chr3 25406460 25406615 -192630543 - FAM SINE Alu -19 166 11 1559 209 22 32 chr3 25406626 25407027 -192630131 + MLT2C1 LTR ERVL 1 397 0 21 0 0 0 chr3 25408355 25408376 -192628782 + AT_rich Low_complexity Low_complexity 1 21 0 2720 169 58 80 chr3 25408492 25409196 -192627962 + LTR8 LTR ERV1 1 689 -2 207 278 56 14 chr3 25411416 25411488 -192625670 + MIR SINE MIR 16 90 -172 233 352 75 6 chr3 25411953 25412112 -192625046 + L1ME4a LINE L1 5395 5564 -557 390 228 134 39 chr3 25412182 25412414 -192624744 + L1ME4a LINE L1 5565 5818 -303 320 267 0 22 chr3 25412440 25412530 -192624628 - MIR SINE MIR -4 258 171 180 0 0 0 chr3 25412649 25412669 -192624489 + (A)n Simple_repeat Simple_repeat 1 20 0 474 148 0 83 chr3 25412692 25412800 -192624358 - Tigger7 DNA MER2_type 0 2487 2389 * 1070 241 72 0 chr3 25412798 25413047 -192624111 - Tigger7 DNA MER2_type -466 267 1 234 212 192 10 chr3 25413241 25413340 -192623818 + L1ME4a LINE L1 5981 6097 -24 236 271 143 76 chr3 25414365 25414575 -192622583 - L2 LINE L2 -32 3240 3017 554 245 168 13 chr3 25414588 25414743 -192622415 - MER5A DNA MER1_type -2 187 9 201 282 13 51 chr3 25414744 25414822 -192622336 - L2 LINE L2 -252 3020 2946 208 219 158 79 chr3 25415153 25415267 -192621891 + L2 LINE L2 3150 3272 0 841 283 53 0 chr3 25415306 25415550 -192621608 + MIR SINE MIR 6 262 0 798 141 88 35 chr3 25416136 25416306 -192620852 - MER3 DNA MER1_type 0 209 31 192 321 99 29 chr3 25416863 25417106 -192620052 - L2 LINE L2 -555 2759 2500 361 167 269 0 chr3 25417547 25417655 -192619503 + MIR SINE MIR 120 256 -6 379 258 127 9 chr3 25419087 25419300 -192617858 - L1ME4a LINE L1 -28 6093 5856 1239 259 88 5 chr3 25419336 25419733 -192617425 - LTR16A LTR ERVL 0 450 21 390 290 169 11 chr3 25419861 25420044 -192617114 - MIR SINE MIR -17 245 34 22 0 0 0 chr3 25420656 25420678 -192616480 + AT_rich Low_complexity Low_complexity 1 22 0 230 257 14 14 chr3 25421148 25421218 -192615940 + CT-rich Low_complexity Low_complexity 1 70 0 188 311 0 0 chr3 25421492 25421537 -192615621 + L2 LINE L2 3258 3302 -11 276 198 154 11 chr3 25422877 25422968 -192614190 - MER112 DNA MER1_type -7 253 150 2376 104 3 0 chr3 25422970 25423277 -192613881 + AluSx SINE Alu 1 308 -4 258 214 265 10 chr3 25424236 25424334 -192612824 + MER5A DNA MER1_type 44 166 -23 * 573 208 0 0 chr3 25424259 25424360 -192612798 - MER5A DNA MER1_type -80 109 9 26 0 0 0 chr3 25424531 25424557 -192612601 + AT_rich Low_complexity Low_complexity 1 26 0 189 205 26 0 chr3 25424671 25424710 -192612448 - L2 LINE L2 0 3313 3274 270 266 11 0 chr3 25425084 25425095 -192612063 - L1MA10 LINE L1 -5 6329 6319 2701 210 64 29 chr3 25425095 25426379 -192610779 - L1ME2 LINE L1 -9 6155 4834 336 291 47 17 chr3 25427598 25427770 -192609388 - L1ME4a LINE L1 -1 6120 5944 33 25 0 0 chr3 25427936 25427976 -192609182 + AT_rich Low_complexity Low_complexity 1 40 0 646 185 64 36 chr3 25428084 25428318 -192608840 + MER106B DNA MER1_type 1 1059 0 4561 169 41 5 chr3 25428786 25430014 -192607144 - L1MB7 LINE L1 -7 6177 4903 234 250 50 0 chr3 25430522 25430582 -192606576 - L2 LINE L2 -1391 1923 1861 800 158 148 10 chr3 25430586 25430782 -192606376 + MLT2C1 LTR ERVL 5 227 -170 398 228 22 0 chr3 25430780 25430872 -192606286 + MLT2C1 LTR ERVL 331 424 -40 * 211 259 23 38 chr3 25430872 25431003 -192606155 + (CATATA)n Simple_repeat Simple_repeat 2 130 0 * 327 201 57 13 chr3 25430909 25431068 -192606090 + (TA)n Simple_repeat Simple_repeat 1 166 0 519 17 0 0 chr3 25431068 25431128 -192606030 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 23 33 0 0 chr3 25431292 25431322 -192605836 + AT_rich Low_complexity Low_complexity 1 30 0 332 267 163 75 chr3 25432473 25432780 -192604378 - L1MC4a LINE L1 -1754 6054 5721 2140 105 10 0 chr3 25432791 25433085 -192604073 + AluSx SINE Alu 6 302 -10 227 263 77 86 chr3 25433251 25433460 -192603698 - L2 LINE L2 -166 3106 2900 544 321 101 17 chr3 25433487 25433833 -192603325 - L2 LINE L2 -468 2846 2472 590 284 103 23 chr3 25433903 25434281 -192602877 - L1MC4a LINE L1 -439 5682 5274 910 186 25 101 chr3 25435912 25436149 -192601009 - MER20 DNA MER1_type 0 219 1 904 173 98 0 chr3 25439473 25439673 -192597485 + L1PA16 LINE L1 5968 6184 0 384 284 86 41 chr3 25439696 25439893 -192597265 + MIR SINE MIR 51 256 -6 190 292 139 23 chr3 25439995 25440211 -192596947 + L2 LINE L2 2013 2253 -1061 341 348 65 16 chr3 25440233 25440417 -192596741 + L2 LINE L2 2555 2747 -567 185 259 86 17 chr3 25440571 25440629 -192596529 + L2 LINE L2 2916 2977 -337 190 250 16 47 chr3 25441836 25441900 -192595258 + L2 LINE L2 3200 3261 -11 215 268 89 27 chr3 25442743 25442855 -192594303 + MIR3 SINE MIR 54 172 -36 886 245 29 29 chr3 25442935 25443180 -192593978 + MIR SINE MIR 13 257 -5 292 151 0 19 chr3 25443255 25443308 -192593850 + L2 LINE L2 2420 2471 -843 1782 140 59 9 chr3 25443308 25443629 -192593529 + MLT1B LTR MaLR 1 337 -53 2359 87 0 0 chr3 25443673 25443973 -192593185 - AluSx SINE Alu -12 300 1 897 268 96 25 chr3 25444002 25444136 -192593022 + L2 LINE L2 2935 3058 -255 390 100 0 0 chr3 25444136 25444196 -192592962 + (CA)n Simple_repeat Simple_repeat 1 60 0 897 268 96 25 chr3 25444196 25444415 -192592743 + L2 LINE L2 3058 3313 0 24 32 0 0 chr3 25445311 25445342 -192591816 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 25445738 25445763 -192591395 + AT_rich Low_complexity Low_complexity 1 25 0 1952 137 27 7 chr3 25445863 25446162 -192590996 - AluJo SINE Alu -7 305 1 2662 148 8 20 chr3 25446968 25447462 -192589696 + L1MB8 LINE L1 5685 6172 -6 586 279 100 16 chr3 25447956 25448558 -192588600 - L1MC/D LINE L1 -447 5795 5124 338 204 258 0 chr3 25448581 25448674 -192588484 + MER45A DNA AcHobo 62 178 0 1020 284 147 29 chr3 25448685 25449908 -192587250 - L1MC/D LINE L1 -1127 5019 3653 344 175 25 50 chr3 25449922 25450002 -192587156 + MER20 DNA MER1_type 142 219 0 226 308 64 29 chr3 25450362 25450706 -192586452 - L1MC/D LINE L1 -2932 3214 2859 2089 41 0 65 chr3 25451001 25451291 -192585867 + L1PA8 LINE L1 5902 6172 0 285 187 224 50 chr3 25451366 25451607 -192585551 + L1ME4a LINE L1 5690 5972 -149 364 308 118 34 chr3 25451762 25452119 -192585039 + L1MC4a LINE L1 5543 5929 -1879 21 0 0 0 chr3 25452283 25452304 -192584854 + AT_rich Low_complexity Low_complexity 1 21 0 27678 35 1 0 chr3 25452941 25457094 -192580064 - L1PA4 LINE L1 -3 6152 1997 460 303 115 49 chr3 25458143 25458595 -192578563 + L2 LINE L2 1754 2235 -1079 2379 73 0 0 chr3 25458737 25459026 -192578132 + AluY SINE Alu 3 291 -20 332 225 42 0 chr3 25460213 25460284 -192576874 - L2 LINE L2 0 3313 3240 215 81 54 0 chr3 25461772 25461809 -192575349 + (CATA)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr3 25462041 25462090 -192575068 + AT_rich Low_complexity Low_complexity 1 49 0 183 129 0 0 chr3 25462185 25462216 -192574942 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 443 250 40 80 chr3 25462618 25462794 -192574364 - MIR SINE MIR -81 181 13 201 257 168 44 chr3 25462776 25462889 -192574269 + L2 LINE L2 3146 3272 0 * 185 0 40 0 chr3 25462928 25462953 -192574205 + (TTA)n Simple_repeat Simple_repeat 3 28 0 16418 38 4 1 chr3 25462953 25465709 -192571449 - L1PA5 LINE L1 -18 6136 3373 13543 166 37 96 chr3 25465746 25468952 -192568206 - L1PA15 LINE L1 -71 6745 3352 189 0 0 0 chr3 25468952 25468973 -192568185 + (TA)n Simple_repeat Simple_repeat 1 21 0 8820 33 13 0 chr3 25468977 25470811 -192566347 - L1PA3 LINE L1 -3 6152 4305 13543 166 37 96 chr3 25470811 25472392 -192564766 - L1PA15 LINE L1 -3467 3349 2238 439 298 161 59 chr3 25472637 25473546 -192563612 - L2 LINE L2 0 3272 2250 213 301 175 0 chr3 25474116 25474219 -192562939 + L2 LINE L2 3193 3313 0 25 31 0 0 chr3 25475310 25475342 -192561816 + AT_rich Low_complexity Low_complexity 1 32 0 2452 71 0 0 chr3 25475536 25475832 -192561326 - AluY SINE Alu -15 296 1 2364 81 0 7 chr3 25475947 25476243 -192560915 - AluY SINE Alu -17 294 1 428 243 28 93 chr3 25476520 25476734 -192560424 - L1MC4 LINE L1 -4 8038 7839 339 343 22 0 chr3 25476769 25476903 -192560255 - MIR SINE MIR 0 262 126 1417 224 119 17 chr3 25478757 25479118 -192558040 + LTR16A LTR ERVL 41 438 -12 957 262 56 4 chr3 25479980 25480213 -192556945 + MIR SINE MIR 1 245 -17 324 0 0 0 chr3 25481542 25481578 -192555580 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 886 196 44 20 chr3 25481968 25482172 -192554986 - MER3 DNA MER1_type 0 209 1 272 235 59 0 chr3 25482240 25482325 -192554833 - L1MB7 LINE L1 0 6184 6095 705 181 9 109 chr3 25482326 25482536 -192554622 - MER105 DNA DNA -13 191 3 1769 162 7 36 chr3 25483144 25483453 -192553705 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr3 25483571 25483594 -192553564 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 25483736 25483758 -192553400 + AT_rich Low_complexity Low_complexity 1 22 0 425 284 113 24 chr3 25484237 25484529 -192552629 - L1M4 LINE L1 -2876 3270 2953 813 181 88 6 chr3 25484946 25485106 -192552052 + MER45A DNA AcHobo 2 174 -4 1470 177 0 15 chr3 25485336 25485607 -192551551 + Tigger7 DNA MER2_type 1 267 -2220 479 216 20 0 chr3 25485603 25485705 -192551453 + Tigger7 DNA MER2_type 2384 2487 0 * 622 253 5 75 chr3 25485926 25486116 -192551042 + MIR SINE MIR 66 243 -19 295 222 9 13 chr3 25486420 25486528 -192550630 + MIR SINE MIR 2 149 -113 305 333 93 43 chr3 25488814 25489072 -192548086 - L3b LINE CR1 -16 1567 1297 269 339 133 48 chr3 25490300 25490849 -192546309 - L2 LINE L2 -98 3174 2591 209 333 70 74 chr3 25491102 25491519 -192545639 - L2 LINE L2 -1298 2016 1602 292 222 0 14 chr3 25493128 25493200 -192543958 + Charlie8 DNA MER1_type 121 191 -2226 232 260 39 0 chr3 25493304 25493381 -192543777 + Charlie8 DNA MER1_type 330 409 -2008 263 172 16 47 chr3 25493456 25493520 -192543638 + Charlie8 DNA MER1_type 2356 2417 0 25 0 0 0 chr3 25497259 25497284 -192539874 + GC_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 25497496 25497526 -192539632 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 25497716 25497737 -192539421 + AT_rich Low_complexity Low_complexity 1 21 0 207 242 20 46 chr3 25497748 25497901 -192539257 + (CGGGG)n Simple_repeat Simple_repeat 5 153 0 328 210 49 12 chr3 25500098 25500179 -192536979 + L2 LINE L2 3188 3271 -1 614 238 44 11 chr3 25501688 25501869 -192535289 - L1ME1 LINE L1 -10 6156 5970 556 297 63 9 chr3 25503965 25504187 -192532971 + MIR SINE MIR 8 241 -21 603 238 0 0 chr3 25504452 25504578 -192532580 - MER94 DNA DNA -8 126 1 28 0 0 0 chr3 25505397 25505425 -192531733 + AT_rich Low_complexity Low_complexity 1 28 0 393 272 111 22 chr3 25505561 25505741 -192531417 - MIR SINE MIR -54 208 13 989 222 25 66 chr3 25507338 25507760 -192529398 - L1ME1 LINE L1 -530 5640 5237 296 287 0 0 chr3 25507926 25508034 -192529124 + (TA)n Simple_repeat Simple_repeat 2 109 0 861 279 75 7 chr3 25508034 25508486 -192528672 - L1ME1 LINE L1 -902 5244 4762 1238 246 77 35 chr3 25508491 25508998 -192528160 + L1ME3A LINE L1 5638 6165 -5 419 246 187 22 chr3 25509730 25509864 -192527294 + MER5B DNA MER1_type 23 178 0 268 287 116 31 chr3 25513586 25513726 -192523432 - MIR SINE MIR -61 147 35 302 274 65 70 chr3 25514539 25514769 -192522389 + L2 LINE L2 1612 1840 -1474 185 338 83 22 chr3 25514820 25515048 -192522110 + L2 LINE L2 2150 2391 -923 2241 126 0 0 chr3 25515432 25515733 -192521425 + AluSx SINE Alu 1 301 -11 267 103 0 0 chr3 25515737 25515776 -192521382 + (TG)n Simple_repeat Simple_repeat 1 39 0 2849 85 3 5 chr3 25517541 25517917 -192519241 + THE1C LTR MaLR 1 375 0 1242 140 93 23 chr3 25518906 25519163 -192517995 + ORSL DNA AcHobo 1 275 0 351 246 15 0 chr3 25520520 25520624 -192516534 + MIR SINE MIR 106 210 -52 686 225 30 6 chr3 25521016 25521185 -192515973 - L1MC5 LINE L1 -58 7903 7731 355 224 59 24 chr3 25521203 25521373 -192515785 - L1MC5 LINE L1 -285 7676 7501 581 253 104 11 chr3 25522181 25522363 -192514795 + MIR SINE MIR 47 245 -17 2956 270 84 5 chr3 25522838 25523822 -192513336 + L2 LINE L2 1481 2542 -772 1523 96 0 0 chr3 25523977 25524174 -192512984 + AluSg/x SINE Alu 107 303 -9 22 80 0 0 chr3 25524240 25524290 -192512868 + AT_rich Low_complexity Low_complexity 1 50 0 1802 146 65 3 chr3 25524674 25525010 -192512148 + MER46B DNA MER2_type 1 232 -4 21 36 0 0 chr3 25525071 25525099 -192512059 + AT_rich Low_complexity Low_complexity 1 28 0 202 345 92 25 chr3 25525476 25525595 -192511563 - MIR3 SINE MIR -78 130 4 25 75 0 0 chr3 25526452 25526505 -192510653 + AT_rich Low_complexity Low_complexity 1 53 0 214 195 0 0 chr3 25526575 25526616 -192510542 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 71 0 0 chr3 25527594 25527636 -192509522 + AT_rich Low_complexity Low_complexity 1 42 0 1602 188 24 7 chr3 25527639 25527932 -192509226 - AluJo SINE Alu -14 298 1 21 0 0 0 chr3 25528488 25528509 -192508649 + AT_rich Low_complexity Low_complexity 1 21 0 1429 258 113 26 chr3 25530249 25530797 -192506361 - MLT1G LTR MaLR -18 572 17 26 0 0 0 chr3 25531831 25531857 -192505301 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr3 25531977 25532008 -192505150 + AT_rich Low_complexity Low_complexity 1 31 0 415 237 62 62 chr3 25532128 25532500 -192504658 - L1M4 LINE L1 -2739 3905 3534 22 88 0 0 chr3 25533152 25533209 -192503949 + AT_rich Low_complexity Low_complexity 1 57 0 25 51 0 0 chr3 25533261 25533300 -192503858 + AT_rich Low_complexity Low_complexity 1 39 0 200 185 0 37 chr3 25535556 25535610 -192501548 + A-rich Low_complexity Low_complexity 6 57 0 3992 202 35 18 chr3 25536502 25537464 -192499694 - L1M4 LINE L1 -4927 1615 637 2455 70 0 0 chr3 25537771 25538070 -192499088 - AluY SINE Alu -12 299 1 2836 168 62 9 chr3 25538240 25538816 -192498342 - L1MB7 LINE L1 -16 6168 5562 555 226 120 51 chr3 25539114 25539331 -192497827 + MIR SINE MIR 31 262 0 2258 96 7 0 chr3 25539485 25539776 -192497382 - AluY SINE Alu -18 293 1 555 127 136 0 chr3 25540434 25540544 -192496614 - MER20 DNA MER1_type 0 219 95 228 244 228 8 chr3 25540680 25540807 -192496351 + MER103 DNA DNA 3 157 -9 314 206 32 0 chr3 25540863 25540926 -192496232 - MIR3 SINE MIR -54 154 90 247 290 0 43 chr3 25540957 25541026 -192496132 - L2 LINE L2 -25 3247 3182 438 344 78 22 chr3 25541438 25541668 -192495490 + MIR SINE MIR 16 258 -4 311 286 121 52 chr3 25541684 25542048 -192495110 - L2 LINE L2 -1360 1954 1566 271 361 113 4 chr3 25543513 25543743 -192493415 + L2 LINE L2 2226 2480 -834 188 386 29 0 chr3 25544079 25544149 -192493009 + L2 LINE L2 3108 3179 -93 197 235 39 20 chr3 25544156 25544207 -192492951 + MIR SINE MIR 207 258 -4 377 357 70 11 chr3 25544508 25544693 -192492465 + MIR SINE MIR 24 219 -43 1374 184 83 12 chr3 25544725 25545052 -192492106 + MLT1A1 LTR MaLR 4 353 -12 201 207 0 35 chr3 25545782 25545840 -192491318 + T-rich Low_complexity Low_complexity 5 60 0 31 0 0 0 chr3 25647031 25647062 -192390096 + AT_rich Low_complexity Low_complexity 1 31 0 245 243 10 107 chr3 25647212 25647315 -192389843 + MIR3 SINE MIR 112 204 -4 779 211 40 60 chr3 25647352 25647551 -192389607 + MER58C DNA MER1_type 2 196 -19 308 311 44 7 chr3 25647783 25647918 -192389240 + MER91C DNA MER1_type 1 140 0 713 270 132 48 chr3 25650228 25650583 -192386575 + L2 LINE L2 2929 3313 0 2268 146 9 6 chr3 25651057 25651393 -192385765 - MER1B DNA MER1_type 0 337 1 1953 205 54 14 chr3 25652623 25653067 -192384091 - MLT1C LTR MaLR 0 467 6 255 319 177 0 chr3 25654131 25654244 -192382914 + MIR SINE MIR 92 224 -38 284 364 20 10 chr3 25654310 25654461 -192382697 - MIR SINE MIR -65 143 25 296 263 131 0 chr3 25654694 25654793 -192382365 + MIR SINE MIR 86 197 -65 2265 100 0 0 chr3 25655786 25656089 -192381069 - AluSg SINE Alu 0 303 1 342 308 29 52 chr3 25657253 25657488 -192379670 + MIR SINE MIR 3 236 -26 2455 72 0 10 chr3 25657710 25658017 -192379141 + L1PA7 LINE L1 5851 6154 0 21 0 0 0 chr3 25658303 25658324 -192378834 + AT_rich Low_complexity Low_complexity 1 21 0 273 298 21 21 chr3 25658834 25658928 -192378230 + MER5A DNA MER1_type 26 119 -70 2899 89 38 23 chr3 25658950 25659268 -192377890 - L1MA3 LINE L1 0 6305 5993 2655 43 0 0 chr3 25659268 25659568 -192377590 - AluY SINE Alu -11 300 1 2899 89 38 23 chr3 25659568 25659847 -192377311 - L1MA3 LINE L1 -312 5993 5525 1379 188 56 24 chr3 25659847 25660135 -192377023 - AluJo SINE Alu -3 309 13 876 175 0 0 chr3 25660152 25660306 -192376852 - FAM SINE Alu -22 163 10 196 179 0 26 chr3 25660313 25660352 -192376806 - MER5A DNA MER1_type -108 81 44 393 310 91 21 chr3 25660732 25660919 -192376239 + MIR3 SINE MIR 6 205 -3 2980 104 30 14 chr3 25661700 25662132 -192375026 + L1PB4 LINE L1 5718 6156 0 246 289 36 24 chr3 25662452 25662535 -192374623 + MIR SINE MIR 34 117 -91 186 43 0 0 chr3 25663111 25663134 -192374024 + (TTATA)n Simple_repeat Simple_repeat 4 26 0 26 0 0 0 chr3 25663884 25663910 -192373248 + AT_rich Low_complexity Low_complexity 1 26 0 2950 166 43 61 chr3 25664026 25664648 -192372510 + LTR36 LTR ERV1 1 611 0 1585 183 9 56 chr3 25665724 25666046 -192371112 - AluJo SINE Alu -5 307 1 694 277 15 30 chr3 25666049 25666251 -192370907 + MIR SINE MIR 37 235 -27 186 71 0 0 chr3 25666899 25666927 -192370231 + (TAAAAA)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr3 25667157 25667182 -192369976 + (T)n Simple_repeat Simple_repeat 1 25 0 2394 103 0 3 chr3 25667632 25667944 -192369214 + AluSx SINE Alu 2 312 0 750 242 167 43 chr3 25668340 25668824 -192368334 + MLT1H1 LTR MaLR 17 555 0 227 203 51 17 chr3 25669309 25669368 -192367790 - MER91B DNA MER1_type -42 148 88 403 287 230 14 chr3 25670177 25670386 -192366772 + MIR SINE MIR 9 262 0 22 0 0 0 chr3 25670391 25670413 -192366745 + AT_rich Low_complexity Low_complexity 1 22 0 266 239 141 0 chr3 25670729 25670821 -192366337 - MIR SINE MIR -16 246 142 600 238 24 53 chr3 25672403 25672609 -192364549 + MIR SINE MIR 63 262 0 505 254 129 49 chr3 25672743 25672815 -192364343 + L1ME4a LINE L1 5740 5805 -316 2121 118 0 23 chr3 25672815 25673119 -192364039 - AluSx SINE Alu -11 301 5 505 254 129 49 chr3 25673119 25673396 -192363762 + L1ME4a LINE L1 5805 6117 -4 313 244 0 13 chr3 25673881 25673959 -192363199 - MIR3 SINE MIR -9 199 123 520 231 27 34 chr3 25674927 25675074 -192362084 + MIR SINE MIR 109 254 -8 671 165 132 6 chr3 25675192 25675348 -192361810 - MER5A DNA MER1_type -6 183 4 232 221 235 0 chr3 25677253 25677321 -192359837 - L2 LINE L2 0 3272 3189 208 222 44 89 chr3 25677385 25677475 -192359683 - MER5A DNA MER1_type -56 133 48 1719 197 23 0 chr3 25678565 25678865 -192358293 - AluJo SINE Alu 0 312 6 1928 151 0 0 chr3 25678957 25679248 -192357910 + AluJb SINE Alu 5 295 -17 335 255 135 73 chr3 25679532 25679596 -192357562 + MLT1L LTR MaLR 215 274 -341 936 156 27 11 chr3 25679596 25679782 -192357376 + MER53 DNA DNA 1 189 0 335 255 135 73 chr3 25679782 25679976 -192357182 + MLT1L LTR MaLR 274 489 -126 423 313 81 19 chr3 25679976 25680136 -192357022 - MER5B DNA MER1_type -2 176 7 341 183 76 20 chr3 25681390 25681479 -192355679 + L1MC4a LINE L1 6285 6371 -1437 2286 147 3 29 chr3 25681479 25681825 -192355333 + MER1B DNA MER1_type 1 337 0 311 330 0 22 chr3 25682448 25682539 -192354619 - MER91A DNA MER1_type -40 156 68 279 108 0 0 chr3 25682704 25682741 -192354417 + MSTA LTR MaLR 1 37 -391 1687 176 141 3 chr3 25682741 25683110 -192354048 + MSTA LTR MaLR 9 428 0 9875 169 29 3 chr3 25683110 25684718 -192352440 + MSTA-int LTR MaLR 1 1649 -2 2232 119 182 0 chr3 25684720 25685082 -192352076 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr3 25685923 25685948 -192351210 + AT_rich Low_complexity Low_complexity 1 25 0 359 244 12 0 chr3 25686854 25686936 -192350222 + MLT1L LTR MaLR 170 252 -363 498 199 173 58 chr3 25686977 25687168 -192349990 + MLT1L LTR MaLR 341 553 -62 1370 142 0 27 chr3 25688129 25688354 -192348804 - AluJo SINE Alu -8 304 86 3689 274 111 24 chr3 25690228 25690332 -192346826 - HAL1 LINE L1 -60 2447 2353 191 59 0 29 chr3 25690332 25690366 -192346792 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 1544 173 21 32 chr3 25690366 25690650 -192346508 - AluJb SINE Alu -31 281 1 3689 274 111 24 chr3 25690650 25691390 -192345768 - HAL1 LINE L1 -154 2353 1679 2309 94 0 0 chr3 25691390 25691687 -192345471 - AluSx SINE Alu -15 297 1 3689 274 111 24 chr3 25691687 25693055 -192344103 - HAL1 LINE L1 -828 1679 2 6627 128 68 10 chr3 25693399 25694563 -192342595 + Tigger3b DNA MER2_type 1 1231 0 1590 153 0 0 chr3 25694683 25694919 -192342239 + AluSx SINE Alu 1 236 -76 213 39 0 0 chr3 25694934 25694960 -192342198 + (A)n Simple_repeat Simple_repeat 1 26 0 21 82 0 0 chr3 25695235 25695284 -192341874 + AT_rich Low_complexity Low_complexity 1 49 0 2663 243 77 35 chr3 25696021 25696996 -192340162 - L2 LINE L2 -256 3057 2038 625 326 158 18 chr3 25697324 25697717 -192339441 + LTR16A LTR ERVL 1 448 -2 4333 195 46 6 chr3 25698059 25699634 -192337524 - L1MB7 LINE L1 -5 6677 5040 3371 256 24 28 chr3 25699657 25700806 -192336352 - L1MB7 LINE L1 -4543 2103 960 1096 238 125 7 chr3 25700826 25701129 -192336029 - L1MB7 LINE L1 -6187 355 17 375 311 46 38 chr3 25701248 25701668 -192335490 - L1MC/D LINE L1 -374 5747 5334 1563 231 127 65 chr3 25702316 25702487 -192334671 + MLT1E2 LTR MaLR 4 163 -463 1608 46 0 0 chr3 25702487 25702684 -192334474 - L1PA4 LINE L1 -3 6152 5956 1563 231 127 65 chr3 25702684 25703093 -192334065 + MLT1E2 LTR MaLR 163 620 -6 556 286 132 42 chr3 25703095 25703560 -192333598 - L1MC/D LINE L1 -2757 3389 2875 538 287 97 34 chr3 25703659 25704011 -192333147 - HAL1 LINE L1 -855 1652 1279 291 271 186 43 chr3 25704611 25704751 -192332407 - MIR SINE MIR -55 207 48 1687 112 9 124 chr3 25704778 25705144 -192332014 + AluSx SINE Alu 1 302 0 25 0 0 0 chr3 25705153 25705178 -192331980 + AT_rich Low_complexity Low_complexity 1 25 0 224 186 115 97 chr3 25705360 25705473 -192331685 + L2 LINE L2 3148 3262 -10 946 184 203 0 chr3 25705510 25705776 -192331382 - MER33 DNA MER1_type 0 324 5 2414 90 0 3 chr3 25706351 25706662 -192330496 + AluSx SINE Alu 1 310 -2 716 182 122 0 chr3 25706714 25706862 -192330296 + AluJo SINE Alu 1 166 -146 1019 186 6 11 chr3 25706863 25707040 -192330118 + AluJb SINE Alu 109 284 -28 1219 117 34 0 chr3 25707065 25707244 -192329914 - MER2 DNA MER2_type -160 185 1 679 264 39 35 chr3 25707602 25707856 -192329302 + LTR16A LTR ERVL 12 266 -184 2434 108 19 0 chr3 25708688 25709048 -192328110 + L1PA13 LINE L1 5786 6152 -11 191 304 65 58 chr3 25709135 25709273 -192327885 - L2 LINE L2 -454 2860 2722 251 326 39 23 chr3 25709405 25709534 -192327624 + MIR3 SINE MIR 33 163 -45 407 296 99 56 chr3 25709780 25709922 -192327236 + MER91A DNA MER1_type 29 176 -20 536 177 192 0 chr3 25710839 25710969 -192326189 - MIR SINE MIR -85 177 23 209 284 0 15 chr3 25711820 25711887 -192325271 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1935 154 39 3 chr3 25711970 25712301 -192324857 + MER2 DNA MER2_type 2 344 0 285 206 48 16 chr3 25713209 25713272 -192323886 + L2 LINE L2 3249 3313 0 220 302 0 0 chr3 25713756 25713809 -192323349 - MIR3 SINE MIR -11 197 145 202 305 67 19 chr3 25716735 25716840 -192320318 - MIR3 SINE MIR -9 199 90 2259 87 14 0 chr3 25717583 25717870 -192319288 - AluSc SINE Alu -15 294 4 21 36 0 0 chr3 25717906 25717934 -192319224 + AT_rich Low_complexity Low_complexity 1 28 0 265 313 12 0 chr3 25718630 25718710 -192318448 + MIR3 SINE MIR 122 202 -6 330 244 169 41 chr3 25719728 25719900 -192317258 - L2 LINE L2 0 3313 3120 693 183 57 118 chr3 25720068 25720314 -192316844 + L2 LINE L2 3076 3306 -7 781 289 118 20 chr3 25720359 25720799 -192316359 + L2 LINE L2 1536 2018 -1296 207 250 0 78 chr3 25720798 25720862 -192316296 + L2 LINE L2 3208 3266 -6 * 194 135 0 115 chr3 25721611 25721663 -192315495 + L2 LINE L2 3227 3272 0 23 0 0 0 chr3 25723916 25723939 -192313219 + AT_rich Low_complexity Low_complexity 1 23 0 197 270 79 0 chr3 25723972 25724035 -192313123 + L3 LINE CR1 321 388 -1189 418 341 7 0 chr3 25724239 25724377 -192312781 + MIR3 SINE MIR 67 205 -3 804 164 6 18 chr3 25724445 25724610 -192312548 + L1MA5 LINE L1 6133 6295 -5 317 291 152 93 chr3 25724653 25725082 -192312076 + L3 LINE CR1 750 1203 -374 218 319 101 65 chr3 25725211 25725380 -192311778 + L3 LINE CR1 1397 1571 -6 259 273 18 36 chr3 25725549 25725659 -192311499 + CT-rich Low_complexity Low_complexity 1 108 0 1643 190 0 24 chr3 25725995 25726290 -192310868 + AluJb SINE Alu 1 288 -24 1880 247 78 2 chr3 25727338 25727905 -192309253 + L1M4 LINE L1 4457 5066 -1080 2198 157 40 71 chr3 25727907 25728357 -192308801 + MER77 LTR ERV1 1 436 -169 10619 119 83 142 chr3 25728357 25729084 -192308074 - Tigger1 DNA MER2_type 0 2418 1649 2339 96 0 0 chr3 25729084 25729387 -192307771 - AluSx SINE Alu -9 303 1 10619 119 83 142 chr3 25729387 25731180 -192305978 - Tigger1 DNA MER2_type -769 1649 48 1365 273 61 64 chr3 25731236 25731973 -192305185 + L2 LINE L2 2452 3209 -104 366 278 130 0 chr3 25733866 25733981 -192303177 + L2 LINE L2 3184 3313 0 322 208 0 28 chr3 25734082 25734154 -192303004 + L2 LINE L2 3244 3313 0 1349 208 30 33 chr3 25734576 25734908 -192302250 - L1ME2 LINE L1 -6 6158 5828 1095 184 72 34 chr3 25734911 25735118 -192302040 - MER8 DNA MER2_type -3 236 22 2264 200 87 22 chr3 25735130 25735837 -192301321 - L1ME2 LINE L1 -335 5829 5075 242 226 426 9 chr3 25735866 25735981 -192301177 - MER77 LTR ERV1 -6 599 437 441 273 210 43 chr3 25735995 25736295 -192300863 - L2 LINE L2 -911 2403 2054 2022 106 0 7 chr3 25736303 25736595 -192300563 - AluSc SINE Alu -19 290 1 2389 73 7 0 chr3 25736852 25737155 -192300003 + AluY SINE Alu 1 305 -6 194 107 71 0 chr3 25737480 25737536 -192299622 + (TA)n Simple_repeat Simple_repeat 1 60 0 759 253 185 49 chr3 25737717 25738325 -192298833 - L2 LINE L2 -4 3309 2616 257 222 130 37 chr3 25738405 25738513 -192298645 + L2 LINE L2 3190 3307 -6 26 0 0 0 chr3 25739248 25739274 -192297884 + AT_rich Low_complexity Low_complexity 1 26 0 1602 142 31 43 chr3 25741802 25742126 -192295032 - MER33 DNA MER1_type 0 324 5 240 254 57 49 chr3 25742399 25742521 -192294637 + L1ME4a LINE L1 5923 6045 -76 589 186 0 0 chr3 25742587 25742689 -192294469 - AluJb SINE Alu -30 282 181 1308 183 4 4 chr3 25742689 25742918 -192294240 - AluJb SINE Alu -83 229 1 25 51 0 0 chr3 25742941 25742980 -192294178 + AT_rich Low_complexity Low_complexity 1 39 0 2109 163 18 3 chr3 25743167 25743510 -192293648 - MER7A DNA MER2_type 0 346 1 2519 70 0 0 chr3 25743572 25743872 -192293286 - AluY SINE Alu -11 300 1 1439 156 105 8 chr3 25744036 25744293 -192292865 + AluJo SINE Alu 1 282 -30 1040 172 0 17 chr3 25744307 25744487 -192292671 + AluSg/x SINE Alu 134 310 0 188 358 50 44 chr3 25745700 25745916 -192291242 + MIR3 SINE MIR 4 250 -12 1805 220 47 4 chr3 25749430 25749894 -192287264 - Charlie4a DNA MER1_type -5 503 20 5150 139 41 5 chr3 25750569 25750725 -192286433 - L1PA16 LINE L1 0 6166 6017 222 37 0 0 chr3 25750725 25750752 -192286406 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 5150 139 41 5 chr3 25750752 25751473 -192285685 - L1PA16 LINE L1 -149 6017 5257 6282 196 23 5 chr3 25751627 25752986 -192284172 - L1 LINE L1 -904 5242 3860 571 174 41 0 chr3 25752986 25753107 -192284051 + L1PA15-16 LINE L1 2350 2475 -4374 353 263 167 45 chr3 25753612 25753810 -192283348 - MIR SINE MIR -13 249 28 194 352 96 32 chr3 25754247 25754622 -192282536 + L2 LINE L2 1944 2342 -972 2080 90 0 8 chr3 25754678 25754945 -192282213 + AluSq SINE Alu 39 303 -10 243 255 0 0 chr3 25755129 25755180 -192281978 + GA-rich Low_complexity Low_complexity 2 52 0 1527 193 18 11 chr3 25756374 25756654 -192280504 + AluJo SINE Alu 1 282 -30 183 42 0 0 chr3 25756658 25756682 -192280476 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 1751 173 66 18 chr3 25757154 25757489 -192279669 - MLT1A1 LTR MaLR 0 365 15 935 277 90 19 chr3 25757817 25758229 -192278929 + MLT1J1 LTR MaLR 4 444 -2 316 290 103 26 chr3 25758894 25759049 -192278109 + MIR3 SINE MIR 21 187 -21 422 219 181 48 chr3 25759432 25759724 -192277434 - Charlie7 DNA MER1_type 0 2612 2282 1836 230 130 15 chr3 25759751 25760399 -192276759 - Charlie7 DNA MER1_type -401 2211 1490 772 261 80 31 chr3 25760409 25760734 -192276424 - Charlie7 DNA MER1_type -2259 353 13 411 255 174 19 chr3 25760816 25760977 -192276181 + MER5A DNA MER1_type 4 189 0 241 279 269 18 chr3 25761177 25761396 -192275762 - L2 LINE L2 -61 3252 2979 1790 192 137 105 chr3 25761402 25762166 -192274992 + LTR1B LTR ERV1 1 982 -38 234 236 0 36 chr3 25762317 25762372 -192274786 + L2 LINE L2 3219 3271 -1 259 250 226 0 chr3 25764313 25764397 -192272761 - MIR3 SINE MIR -14 194 92 702 296 94 57 chr3 25764921 25765202 -192271956 + L2 LINE L2 2827 3096 -217 441 0 0 0 chr3 25765202 25765251 -192271907 + (CA)n Simple_repeat Simple_repeat 2 50 0 702 296 94 57 chr3 25765251 25765263 -192271895 + L2 LINE L2 3096 3106 -207 2053 121 4 0 chr3 25765263 25765543 -192271615 - AluSx SINE Alu -31 281 1 702 296 94 57 chr3 25765543 25765718 -192271440 + L2 LINE L2 3106 3313 0 2736 7 0 0 chr3 25766372 25766668 -192270490 - AluY SINE Alu -15 296 1 416 299 55 30 chr3 25767895 25768059 -192269099 + MIR3 SINE MIR 26 193 -15 254 192 77 67 chr3 25768629 25768733 -192268425 + MIR SINE MIR 73 177 -85 3779 197 83 70 chr3 25769425 25770507 -192266651 + LTR28 LTR ERV1 1 1735 -20 1706 84 0 0 chr3 25770543 25770756 -192266402 + AluSc SINE Alu 81 293 -16 344 368 48 6 chr3 25770794 25770960 -192266198 - MIR3 SINE MIR -34 174 2 315 309 81 16 chr3 25774755 25774878 -192262280 - L2 LINE L2 -1 3271 3141 679 297 41 5 chr3 25774929 25775148 -192262010 - MIR SINE MIR -15 247 21 297 0 0 0 chr3 25775308 25775341 -192261817 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1314 164 5 18 chr3 25775348 25775568 -192261590 - AluJo SINE Alu -24 288 72 248 247 0 155 chr3 25775766 25775863 -192261295 - L2 LINE L2 -2 3270 3189 325 340 38 19 chr3 25776315 25776474 -192260684 + MIR SINE MIR 20 181 -81 260 359 81 21 chr3 25776919 25777153 -192260005 - MIR SINE MIR -12 250 3 183 147 29 0 chr3 25777484 25777518 -192259640 - L2 LINE L2 -12 3301 3267 2143 109 14 0 chr3 25778409 25778702 -192258456 + AluY SINE Alu 1 297 -14 1566 164 3 40 chr3 25778702 25779006 -192258152 - AluJb SINE Alu -19 293 1 208 339 118 24 chr3 25779387 25779514 -192257644 - L2 LINE L2 0 3313 3175 1381 186 71 4 chr3 25779728 25780008 -192257150 + L1MC1 LINE L1 5732 6030 -303 2882 176 9 33 chr3 25780008 25780547 -192256611 - MER44D DNA MER2_type -24 581 1 1209 163 76 47 chr3 25780549 25780690 -192256468 + L1MC1 LINE L1 6048 6183 -161 2584 55 0 3 chr3 25780690 25780997 -192256161 + AluY SINE Alu 1 306 -5 1209 163 76 47 chr3 25780997 25781144 -192256014 + L1MC1 LINE L1 6183 6344 0 2263 99 7 0 chr3 25781901 25782205 -192254953 + AluSq SINE Alu 1 306 -7 779 196 33 13 chr3 25783096 25783249 -192253909 - MLT1C LTR MaLR -25 442 287 * 1401 152 81 108 chr3 25783245 25783614 -192253544 - MLT1C LTR MaLR -106 361 3 190 298 0 0 chr3 25783614 25783661 -192253497 + MIR3 SINE MIR 115 161 -47 213 170 64 0 chr3 25783933 25783980 -192253178 + L2 LINE L2 3262 3311 -2 228 370 48 27 chr3 25784525 25784671 -192252487 + L2 LINE L2 596 744 -2570 207 0 0 0 chr3 25784945 25784968 -192252190 + (T)n Simple_repeat Simple_repeat 1 23 0 324 284 9 37 chr3 25785324 25785433 -192251725 - L2 LINE L2 -5 3308 3203 1768 174 7 7 chr3 25785521 25785814 -192251344 - AluJb SINE Alu -19 293 1 266 288 23 45 chr3 25786152 25786284 -192250874 + L2 LINE L2 1823 1951 -1363 462 268 24 16 chr3 25786463 25786590 -192250568 + MER94 DNA DNA 7 134 0 200 304 146 79 chr3 25787218 25787458 -192249700 + L2 LINE L2 2933 3188 -84 27 0 0 0 chr3 25787874 25787901 -192249257 + AT_rich Low_complexity Low_complexity 1 27 0 24 67 0 0 chr3 25789335 25789380 -192247778 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 25789701 25789729 -192247429 + AT_rich Low_complexity Low_complexity 1 28 0 28 99 0 0 chr3 25790563 25790654 -192246504 + AT_rich Low_complexity Low_complexity 1 91 0 370 250 189 0 chr3 25795657 25795809 -192241349 + MER5A DNA MER1_type 4 189 0 533 158 4 214 chr3 25795953 25796187 -192240971 - MER5A DNA MER1_type -1 188 4 25 0 0 0 chr3 25796358 25796383 -192240775 + AT_rich Low_complexity Low_complexity 1 25 0 1541 208 29 44 chr3 25796791 25797176 -192239982 - MER89 LTR ERV1 -1 558 180 357 175 0 0 chr3 25797184 25797247 -192239911 - MER89 LTR ERV1 -496 63 1 270 254 0 0 chr3 25797984 25798039 -192239119 - L2 LINE L2 -5 3267 3213 5149 35 0 0 chr3 25798868 25799477 -192237681 + L1PA3 LINE L1 5544 6152 -3 2105 76 0 0 chr3 25800716 25800979 -192236179 + AluY SINE Alu 40 302 -9 313 269 106 34 chr3 25801026 25801234 -192235924 - L1MC4a LINE L1 -1949 6253 6031 1098 180 11 16 chr3 25801341 25801530 -192235628 + MER5A DNA MER1_type 1 188 -1 353 332 73 28 chr3 25801734 25802020 -192235138 - L1MC4a LINE L1 -1112 5428 5130 25 31 0 0 chr3 25802112 25802144 -192235014 + AT_rich Low_complexity Low_complexity 1 32 0 1516 160 93 15 chr3 25802164 25802433 -192234725 - AluJo SINE Alu -20 292 3 656 320 102 46 chr3 25802518 25803448 -192233710 - L1MC4a LINE L1 -2961 3579 2598 532 318 72 70 chr3 25803460 25804265 -192232893 + L1ME1 LINE L1 36 842 -5554 493 268 91 10 chr3 25804286 25804484 -192232674 + L1ME1 LINE L1 3631 3844 -2371 * 3054 233 78 40 chr3 25804480 25805449 -192231709 + L1ME1 LINE L1 4231 5162 -1073 2057 135 3 7 chr3 25805449 25805753 -192231405 + AluSx SINE Alu 1 303 -9 3054 233 78 40 chr3 25805753 25806412 -192230746 + L1ME1 LINE L1 5162 5944 -291 2258 104 0 3 chr3 25806412 25806710 -192230448 - AluSg SINE Alu -13 297 1 3054 233 78 40 chr3 25806710 25806943 -192230215 + L1ME1 LINE L1 5944 6167 -68 255 324 9 9 chr3 25807428 25807536 -192229622 - L1MC4a LINE L1 -6412 128 21 1617 200 10 13 chr3 25807552 25807862 -192229296 - AluJb SINE Alu -3 309 1 1297 212 85 184 chr3 25807865 25808996 -192228162 + L2 LINE L2 2310 3310 -3 1738 169 3 26 chr3 25809076 25809378 -192227780 + AluJb SINE Alu 2 296 -16 284 273 160 20 chr3 25809541 25809691 -192227467 - MIR3 SINE MIR -36 172 2 191 290 14 43 chr3 25810727 25810796 -192226362 - MIR SINE MIR -125 83 17 216 356 100 40 chr3 25811207 25811758 -192225400 + L2 LINE L2 945 1528 -1786 318 329 177 44 chr3 25811760 25812352 -192224806 + L2 LINE L2 2212 2882 -432 3162 273 129 27 chr3 25812636 25814164 -192222994 - L2 LINE L2 -5 3308 1640 1029 255 273 19 chr3 25814584 25815310 -192221848 - L2 LINE L2 -1661 1653 744 467 273 31 16 chr3 25815529 25815657 -192221501 - MIR SINE MIR -89 173 44 239 321 107 36 chr3 25817096 25817292 -192219866 - MIR SINE MIR -4 258 49 799 202 35 81 chr3 25818169 25818367 -192218791 - MER5A DNA MER1_type 0 189 1 192 77 0 0 chr3 25821053 25821079 -192216079 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 351 245 172 56 chr3 25822217 25822290 -192214868 - MIR SINE MIR 0 262 199 2454 58 0 0 chr3 25822290 25822584 -192214574 - AluY SINE Alu -17 294 1 351 245 172 56 chr3 25822584 25822743 -192214415 - MIR SINE MIR -63 199 3 251 288 183 26 chr3 25823054 25823207 -192213951 + L2 LINE L2 2560 2736 -578 25 51 0 0 chr3 25823835 25823874 -192213284 + AT_rich Low_complexity Low_complexity 1 39 0 264 303 8 23 chr3 25823887 25824019 -192213139 - L1ME LINE L1 -254 5867 5738 4472 23 6 0 chr3 25824036 25824568 -192212590 - L1P LINE L1 -1975 4171 3637 3147 173 14 2 chr3 25824671 25825491 -192211667 - L1M1 LINE L1 -745 5401 4711 1634 193 10 7 chr3 25825498 25825804 -192211354 - AluJb SINE Alu -5 307 1 333 233 10 0 chr3 25825833 25825930 -192211228 - L1MC4 LINE L1 -1339 7498 2521 327 261 0 23 chr3 25825990 25826078 -192211080 - L1MC4 LINE L1 -1339 6703 6618 21 0 0 0 chr3 25826179 25826200 -192210958 + AT_rich Low_complexity Low_complexity 1 21 0 7685 174 41 32 chr3 25826201 25827564 -192209594 + L1MB8 LINE L1 2921 4306 -1840 2405 75 0 3 chr3 25827564 25827859 -192209299 - AluY SINE Alu -13 298 5 7685 174 41 32 chr3 25827859 25828266 -192208892 + L1MB8 LINE L1 4306 4708 -1438 207 100 0 0 chr3 25828298 25828328 -192208830 + (TA)n Simple_repeat Simple_repeat 1 30 0 778 215 58 35 chr3 25829067 25829362 -192207796 + L1MB8 LINE L1 5759 6022 -156 1416 253 67 26 chr3 25829422 25830299 -192206859 - L1MC4 LINE L1 -4889 1534 1061 338 311 10 0 chr3 25830403 25830506 -192206652 - L1MC4 LINE L1 -5502 921 818 246 343 29 15 chr3 25830748 25830885 -192206273 - L1MC4 LINE L1 -6020 403 265 237 237 26 26 chr3 25831032 25831108 -192206050 - L1MCa LINE L1 -6331 95 20 1804 154 101 0 chr3 25831502 25831808 -192205350 - MER1B DNA MER1_type 0 337 1 645 218 8 8 chr3 25831925 25832058 -192205100 + FLAM_A SINE Alu 1 133 0 28 71 0 0 chr3 25832722 25832778 -192204380 + AT_rich Low_complexity Low_complexity 1 56 0 751 265 25 5 chr3 25833307 25833511 -192203647 + MER3 DNA MER1_type 2 209 0 5709 25 1 1 chr3 25834280 25834949 -192202209 - L1PA3 LINE L1 0 6155 5487 1857 156 28 0 chr3 25835416 25835704 -192201454 + AluSx SINE Alu 2 297 -15 336 96 39 0 chr3 25835891 25835943 -192201215 + MER65B LTR ERV1 1 54 -477 272 222 32 16 chr3 25835947 25836010 -192201148 - MER2 DNA MER2_type 0 345 282 * 495 270 107 19 chr3 25835989 25836148 -192201010 - MER8 DNA MER2_type -64 175 3 234 232 89 95 chr3 25836222 25836390 -192200768 + MER65B LTR ERV1 80 246 -285 1547 164 28 71 chr3 25836755 25837079 -192200079 - AluJb SINE Alu -2 310 1 220 341 57 0 chr3 25837142 25837230 -192199928 + L2 LINE L2 3133 3225 -47 425 299 129 7 chr3 25838744 25838921 -192198237 - MIR SINE MIR -48 214 22 1670 152 9 60 chr3 25839258 25839573 -192197585 - AluSx SINE Alu -10 302 4 5361 38 3 0 chr3 25841570 25842251 -192194907 - L1P LINE L1 -2465 3681 2999 10082 25 1 0 chr3 25842251 25844215 -192192943 + L1PA3 LINE L1 4194 6155 0 300 290 75 18 chr3 25844422 25844662 -192192496 - L1MC/D LINE L1 -755 5391 5213 189 359 43 11 chr3 25845270 25845362 -192191796 + MIR SINE MIR 29 123 -139 23 0 0 0 chr3 25845617 25845640 -192191518 + AT_rich Low_complexity Low_complexity 1 23 0 1512 175 38 15 chr3 25845872 25846135 -192191023 + AluJo SINE Alu 14 282 -30 388 295 160 6 chr3 25846462 25846618 -192190540 - MER5A DNA MER1_type -1 188 9 853 196 38 11 chr3 25847336 25847520 -192189638 - MER5A DNA MER1_type 0 189 1 190 137 0 39 chr3 25848358 25848409 -192188749 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 4224 54 6 0 chr3 25849335 25849870 -192187288 + L1PA7 LINE L1 5615 6152 -2 186 167 0 0 chr3 25849926 25849962 -192187196 + A-rich Low_complexity Low_complexity 2 37 0 23 68 0 0 chr3 25850553 25850597 -192186561 + AT_rich Low_complexity Low_complexity 1 44 0 183 42 0 0 chr3 25850816 25850840 -192186318 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 25851998 25852020 -192185138 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 25853778 25853799 -192183359 + AT_rich Low_complexity Low_complexity 1 21 0 462 315 25 47 chr3 25853887 25854166 -192182992 - MARNA DNA Mariner -238 348 76 366 349 60 36 chr3 25854285 25854534 -192182624 - L3 LINE CR1 -13 1564 1310 185 321 19 0 chr3 25854594 25854647 -192182511 + L2 LINE L2 3258 3311 -2 22 0 0 0 chr3 25854687 25854709 -192182449 + AT_rich Low_complexity Low_complexity 1 22 0 260 333 81 0 chr3 25855801 25855900 -192181258 - MIR SINE MIR -5 257 151 2171 109 6 3 chr3 25856310 25856622 -192180536 - AluSp SINE Alu 0 313 1 21 0 0 0 chr3 25856889 25856910 -192180248 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 25857078 25857113 -192180045 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 25859465 25859488 -192177670 + AT_rich Low_complexity Low_complexity 1 23 0 1698 249 75 12 chr3 25859494 25860133 -192177025 + L1M4 LINE L1 2569 3247 -2899 1528 201 81 26 chr3 25860139 25860610 -192176548 + L1M4 LINE L1 4850 5346 -812 1871 146 21 0 chr3 25860620 25860908 -192176250 - AluSx SINE Alu -18 294 1 931 146 176 10 chr3 25860917 25861122 -192176036 - L1MD1 LINE L1 -2 6240 6002 381 209 135 0 chr3 25861123 25861286 -192175872 - L1M4 LINE L1 -2889 3257 3073 242 245 147 35 chr3 25861306 25861449 -192175709 - L1ME LINE L1 -346 5775 5617 25 0 0 0 chr3 25861589 25861614 -192175544 + AT_rich Low_complexity Low_complexity 1 25 0 321 183 17 0 chr3 25861627 25861687 -192175471 - AluJo SINE Alu -122 180 120 657 159 0 43 chr3 25861701 25861839 -192175319 - FLAM_C SINE Alu -1 142 11 32 91 0 0 chr3 25861983 25862071 -192175087 + AT_rich Low_complexity Low_complexity 1 88 0 279 186 0 0 chr3 25862119 25862178 -192174980 - MER57A LTR ERV1 -28 375 317 430 311 0 25 chr3 25862461 25862580 -192174578 - L2 LINE L2 -2 3311 3196 248 284 11 0 chr3 25862743 25862831 -192174327 - L1M4 LINE L1 -3905 2241 2153 314 247 86 0 chr3 25862989 25863070 -192174088 - MIR SINE MIR 0 262 175 349 325 77 6 chr3 25863292 25863461 -192173697 - HAL1b LINE L1 -607 741 561 490 229 84 89 chr3 25864009 25864151 -192173007 + MIR SINE MIR 50 193 -69 1750 166 0 7 chr3 25864151 25864483 -192172675 + AluJb SINE Alu 1 330 0 490 229 84 89 chr3 25864483 25864553 -192172605 + MIR SINE MIR 193 262 0 2013 144 0 0 chr3 25865720 25866019 -192171139 + AluSx SINE Alu 1 299 -13 264 202 0 53 chr3 25866781 25866875 -192170283 + T-rich Low_complexity Low_complexity 5 93 0 284 218 26 0 chr3 25867320 25867398 -192169760 - MER5C DNA MER1_type -168 156 77 470 265 61 30 chr3 25867607 25867739 -192169419 - MIR SINE MIR -10 252 117 701 126 8 17 chr3 25867779 25867898 -192169260 - FLAM_A SINE Alu -15 118 1 23 33 0 0 chr3 25868132 25868162 -192168996 + AT_rich Low_complexity Low_complexity 1 30 0 267 79 0 0 chr3 25869318 25869356 -192167802 + (CA)n Simple_repeat Simple_repeat 2 39 0 629 191 72 0 chr3 25869559 25869711 -192167447 + MER45A DNA AcHobo 3 177 -1 282 224 56 88 chr3 25869765 25869890 -192167268 + MIR SINE MIR 113 233 -29 1562 181 44 3 chr3 25870018 25870311 -192166847 + AluSg SINE Alu 1 305 -5 24 32 0 0 chr3 25870521 25870552 -192166606 + AT_rich Low_complexity Low_complexity 1 31 0 1570 218 30 3 chr3 25871148 25871479 -192165679 - MER58B DNA MER1_type -1 340 1 2645 174 56 13 chr3 25871678 25872275 -192164883 + L1MB7 LINE L1 5548 6181 -2 2031 103 48 10 chr3 25873535 25873826 -192163332 + AluSc SINE Alu 1 302 -7 22 35 0 0 chr3 25876301 25876330 -192160828 + AT_rich Low_complexity Low_complexity 1 29 0 296 280 99 54 chr3 25876426 25876665 -192160493 - L1ME LINE L1 -404 5717 5473 212 290 9 56 chr3 25877775 25877882 -192159276 - L2 LINE L2 -60 3253 3152 1542 154 25 87 chr3 25877882 25878238 -192158920 - MER44D DNA MER2_type 0 609 6 180 0 0 0 chr3 25878238 25878258 -192158900 + (TACTG)n Simple_repeat Simple_repeat 1 20 0 438 20 0 0 chr3 25878289 25878340 -192158818 + (TG)n Simple_repeat Simple_repeat 2 52 0 213 262 16 0 chr3 25878348 25878409 -192158749 + L2 LINE L2 3208 3269 -3 411 333 56 14 chr3 25879695 25879911 -192157247 + MLT1L LTR MaLR 389 613 -2 25 51 0 0 chr3 25880047 25880086 -192157072 + AT_rich Low_complexity Low_complexity 1 39 0 677 298 12 0 chr3 25880433 25880604 -192156554 - MIR SINE MIR -89 173 1 400 305 62 59 chr3 25880637 25880813 -192156345 - L1ME LINE L1 -1495 4651 4472 1842 164 3 7 chr3 25880813 25881111 -192156047 - AluJo SINE Alu -15 297 1 400 305 62 59 chr3 25881111 25881255 -192155903 - L1ME LINE L1 -1674 4472 4330 27 81 0 0 chr3 25881583 25881645 -192155513 + AT_rich Low_complexity Low_complexity 1 62 0 313 341 171 24 chr3 25883251 25883462 -192153696 + MIR SINE MIR 2 243 -19 2563 124 18 0 chr3 25884683 25885079 -192152079 + MER57A LTR ERV1 1 403 0 222 323 39 31 chr3 25885453 25885580 -192151578 - MIR3 SINE MIR -16 192 65 22 0 0 0 chr3 25886573 25886595 -192150563 + AT_rich Low_complexity Low_complexity 1 22 0 1637 202 78 53 chr3 25886600 25886815 -192150343 - L1MC5 LINE L1 -44 7917 7709 1561 186 0 46 chr3 25886815 25887142 -192150016 + AluJo SINE Alu 1 312 0 1637 202 78 53 chr3 25887142 25887526 -192149632 - L1MC5 LINE L1 -252 7709 7303 771 237 237 49 chr3 25887564 25888012 -192149146 + MLT1G3 LTR MaLR 9 540 -27 824 188 31 71 chr3 25888025 25888249 -192148909 - L1MC5 LINE L1 -682 7279 7065 670 192 0 15 chr3 25889138 25889268 -192147890 + MLT1J1 LTR MaLR 20 147 -299 955 219 196 29 chr3 25889434 25889776 -192147382 + MLT1F LTR MaLR 136 534 -8 686 271 33 37 chr3 25889956 25890229 -192146929 + MLT1F-int LTR MaLR 292 563 -808 30 0 0 0 chr3 25890451 25890481 -192146677 + AT_rich Low_complexity Low_complexity 1 30 0 6620 54 18 8 chr3 25890628 25891500 -192145658 - L1PA7 LINE L1 -13 6141 5261 5687 92 0 0 chr3 25891490 25892286 -192144872 + L1P LINE L1 4408 5203 -943 * 625 171 45 0 chr3 25892294 25892405 -192144753 + MER20 DNA MER1_type 104 219 0 184 300 20 0 chr3 25892515 25892565 -192144593 + L2 LINE L2 3254 3304 -9 274 367 25 8 chr3 25892620 25892740 -192144418 + MIR3 SINE MIR 41 162 -46 237 313 62 0 chr3 25892915 25892995 -192144163 + L2 LINE L2 3229 3313 0 25 31 0 0 chr3 25893654 25893686 -192143472 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 25894827 25894857 -192142301 + AT_rich Low_complexity Low_complexity 1 30 0 263 150 0 0 chr3 25895130 25895170 -192141988 - U6 snRNA snRNA -66 41 2 520 222 167 11 chr3 25895189 25895369 -192141789 + MER3 DNA MER1_type 1 208 -1 24 53 0 0 chr3 25895373 25895411 -192141747 + AT_rich Low_complexity Low_complexity 1 38 0 1719 166 7 24 chr3 25895631 25895926 -192141232 - AluJb SINE Alu -22 290 1 197 261 98 54 chr3 25896469 25896561 -192140597 + MIR SINE MIR 120 215 -47 185 177 32 48 chr3 25896849 25896911 -192140247 - L2 LINE L2 -62 3251 3191 22 35 0 0 chr3 25897139 25897168 -192139990 + AT_rich Low_complexity Low_complexity 1 29 0 689 301 40 78 chr3 25897739 25898248 -192138910 + L2 LINE L2 2786 3296 -17 2125 154 39 31 chr3 25898591 25899135 -192138023 + MLT2A2 LTR ERVL 1 554 0 259 159 0 32 chr3 25899273 25899336 -192137822 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 317 253 12 12 chr3 25899342 25899425 -192137733 + L1MC4 LINE L1 6614 6696 -1346 367 228 86 10 chr3 25900486 25900609 -192136549 - MIR SINE MIR -41 167 73 1124 182 15 5 chr3 25901604 25901807 -192135351 - MER2 DNA MER2_type -135 210 6 22 56 0 0 chr3 25903524 25903560 -192133598 + AT_rich Low_complexity Low_complexity 1 36 0 741 169 42 131 chr3 25906030 25906266 -192130892 + MIR SINE MIR 2 216 -46 432 0 0 0 chr3 25906275 25906323 -192130835 + (CA)n Simple_repeat Simple_repeat 2 49 0 1208 183 24 62 chr3 25906334 25906623 -192130535 - AluJo SINE Alu -30 282 5 23 33 0 0 chr3 25906634 25906664 -192130494 + AT_rich Low_complexity Low_complexity 1 30 0 13942 137 37 7 chr3 25907074 25909417 -192127741 + Tigger1 DNA MER2_type 2 2414 -4 248 158 0 0 chr3 25910025 25910063 -192127095 - L2 LINE L2 -13 3300 3263 274 269 0 15 chr3 25910723 25910790 -192126368 - MIR SINE MIR -103 159 94 378 321 0 15 chr3 25911206 25911343 -192125815 + MER117 DNA MER1_type 12 146 -51 23 33 0 0 chr3 25911519 25911549 -192125609 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 25913078 25913099 -192124059 + AT_rich Low_complexity Low_complexity 1 21 0 241 239 231 30 chr3 25913409 25913543 -192123615 - MIR SINE MIR -51 211 51 1921 146 0 7 chr3 25913580 25913881 -192123277 + AluJb SINE Alu 3 301 -11 183 290 43 65 chr3 25914126 25914219 -192122939 - MIR SINE MIR -56 206 116 237 178 0 0 chr3 25916627 25916672 -192120486 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 28 0 0 0 chr3 25918331 25918359 -192118799 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 25919292 25919320 -192117838 + AT_rich Low_complexity Low_complexity 1 28 0 355 287 111 49 chr3 25921067 25921311 -192115847 + L1M4 LINE L1 3 261 -6281 2293 135 19 6 chr3 25921514 25921878 -192115280 - THE1C LTR MaLR -6 369 1 8926 111 37 94 chr3 25921884 25923548 -192113610 - THE1C-int LTR MaLR -12 1568 1 2551 109 5 11 chr3 25923548 25923925 -192113233 - THE1C LTR MaLR 0 375 1 249 158 0 61 chr3 25924030 25924112 -192113046 - THE1C LTR MaLR -297 78 2 397 272 25 38 chr3 25924154 25924330 -192112828 + L1M4 LINE L1 533 926 -5720 569 253 65 7 chr3 25924626 25924780 -192112378 + MIR SINE MIR 100 262 0 1677 196 86 24 chr3 25925357 25925730 -192111428 + MSTD LTR MaLR 1 396 0 198 0 0 0 chr3 25925983 25926005 -192111153 + (TG)n Simple_repeat Simple_repeat 1 22 0 347 160 13 0 chr3 25926009 25926084 -192111074 + GA-rich Low_complexity Low_complexity 1 76 0 184 265 118 0 chr3 25926155 25926223 -192110935 - MER5B DNA MER1_type -78 100 25 2357 113 19 11 chr3 25926745 25927117 -192110041 + THE1C LTR MaLR 1 375 0 26 64 0 0 chr3 25927347 25927394 -192109764 + AT_rich Low_complexity Low_complexity 1 47 0 1640 169 33 0 chr3 25928764 25929037 -192108121 + AluJb SINE Alu 1 282 -30 1908 154 0 0 chr3 25929054 25929358 -192107800 - AluSx SINE Alu 0 308 5 382 272 204 59 chr3 25929596 25930096 -192107062 - L2 LINE L2 0 3313 2738 313 253 40 73 chr3 25930323 25930473 -192106685 + L1ME LINE L1 3 147 -5923 243 287 39 23 chr3 25930945 25931074 -192106084 + L1ME LINE L1 329 459 -5611 267 287 32 11 chr3 25931151 25931245 -192105913 + L1ME LINE L1 447 542 -5541 215 209 31 31 chr3 25931272 25931401 -192105757 + GA-rich Low_complexity Low_complexity 4 132 0 512 240 42 31 chr3 25931409 25931601 -192105557 + L1ME LINE L1 542 735 -5345 1545 202 42 42 chr3 25931621 25932047 -192105111 + LTR56 LTR ERV1 20 445 0 700 220 39 35 chr3 25932094 25932353 -192104805 + L1ME LINE L1 787 1046 -5037 200 217 0 0 chr3 25932647 25932693 -192104465 + A-rich Low_complexity Low_complexity 1 46 0 536 264 52 20 chr3 25932754 25933004 -192104154 - L1ME4a LINE L1 -187 5934 5677 309 218 13 39 chr3 25933665 25933743 -192103415 + MER58 DNA MER1_type 27 102 -113 563 195 235 23 chr3 25933788 25933945 -192103213 - MER5C DNA MER1_type -54 270 148 1814 170 12 23 chr3 25933945 25934287 -192102871 + MER44D DNA MER2_type 1 608 -1 563 195 235 23 chr3 25934287 25934350 -192102808 - MER5C DNA MER1_type -176 148 3 655 346 213 28 chr3 25934712 25935111 -192102047 - L2 LINE L2 -710 2604 2280 2175 72 10 3 chr3 25935111 25935402 -192101756 + AluY SINE Alu 1 293 -18 655 346 213 28 chr3 25935402 25936082 -192101076 - L2 LINE L2 -1034 2280 1325 366 256 0 22 chr3 25936433 25936523 -192100635 + FRAM/FAM SINE Alu 1 86 -80 * 4909 141 9 20 chr3 25936522 25937361 -192099797 - Tigger1 DNA MER2_type -570 1848 1019 12194 117 16 25 chr3 25937373 25939760 -192097398 + L1P3 LINE L1 6 2413 -4048 2209 81 6 31 chr3 25939729 25940051 -192097107 + L1PA7 LINE L1 5623 5936 -533 * 1139 62 0 0 chr3 25940051 25940193 -192096965 + L1PA7 LINE L1 6312 6457 -12 965 105 37 19 chr3 25940193 25940355 -192096803 + AluSq SINE Alu 134 298 -15 659 96 0 0 chr3 25940356 25940450 -192096708 + L1M1 LINE L1 2626 2719 -4846 * 2259 134 37 68 chr3 25940447 25941056 -192096102 + L1M1 LINE L1 3266 3876 -3689 383 248 77 0 chr3 26141058 26141175 -191895983 - L3 LINE CR1 -149 1428 1303 733 163 121 25 chr3 26142267 26142507 -191894651 + MER33 DNA MER1_type 28 290 -34 465 206 84 19 chr3 26143570 26143677 -191893481 + MER33 DNA MER1_type 1 114 -210 1074 232 18 0 chr3 26144085 26144305 -191892853 + MER58A DNA MER1_type 1 224 0 878 216 0 21 chr3 26144678 26144868 -191892290 + MER5A DNA MER1_type 1 186 -3 242 125 0 0 chr3 26146787 26146827 -191890331 + 5S rRNA rRNA 1 40 -81 2452 84 0 0 chr3 26147183 26147492 -191889666 + AluY SINE Alu 1 309 -2 791 198 8 15 chr3 26148729 26148901 -191888257 - MER5B DNA MER1_type 0 189 8 353 304 21 62 chr3 26150327 26150521 -191886637 - MLT1H LTR MaLR -289 260 75 784 261 5 0 chr3 26150640 26150824 -191886334 + MIR SINE MIR 11 195 -67 215 309 15 0 chr3 26151174 26151242 -191885916 - L2 LINE L2 -4 3309 3241 290 228 206 0 chr3 26151427 26151519 -191885639 + MIR SINE MIR 108 218 -44 1298 147 53 9 chr3 26153059 26153284 -191883874 - MER46A DNA MER2_type -1 235 1 342 0 0 0 chr3 26153608 26153646 -191883512 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chr3 26153645 26153671 -191883487 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 2154 116 0 23 chr3 26153671 26153974 -191883184 - AluSx SINE Alu -16 296 1 323 289 88 90 chr3 26154236 26154579 -191882579 - MLT1I LTR MaLR 0 409 68 2276 121 30 33 chr3 26154620 26154985 -191882173 + THE1B LTR MaLR 1 364 0 1073 322 190 12 chr3 26156177 26157210 -191879948 - L2 LINE L2 -187 3085 1860 496 264 46 27 chr3 26158764 26158966 -191878192 + MIR SINE MIR 2 202 -60 457 261 62 47 chr3 26159043 26159254 -191877904 - MIR SINE MIR -2 260 47 287 321 71 48 chr3 26159436 26159498 -191877660 + MIR SINE MIR 35 94 -168 2140 125 47 33 chr3 26159498 26159857 -191877301 - THE1B LTR MaLR 0 364 1 287 321 71 48 chr3 26159857 26159962 -191877196 + MIR SINE MIR 94 206 -56 7461 38 2 0 chr3 26160216 26161284 -191875874 + L1PA5 LINE L1 5084 6153 -1 234 267 74 0 chr3 26161458 26161534 -191875624 - MIR SINE MIR -87 121 41 23 33 0 0 chr3 26162468 26162498 -191874660 + AT_rich Low_complexity Low_complexity 1 30 0 453 302 6 11 chr3 26162697 26162876 -191874282 + (TA)n Simple_repeat Simple_repeat 2 179 0 1520 168 51 0 chr3 26165158 26165414 -191871744 - AluSx SINE Alu -9 303 35 585 228 54 6 chr3 26165787 26165954 -191871204 + LTR16C LTR ERVL 305 479 -12 859 146 146 0 chr3 26167087 26167307 -191869851 + MER33 DNA MER1_type 51 302 -22 291 196 41 0 chr3 26167543 26167640 -191869518 + CT-rich Low_complexity Low_complexity 3 103 0 219 69 0 0 chr3 26168356 26168385 -191868773 + (T)n Simple_repeat Simple_repeat 1 29 0 702 276 57 39 chr3 26168864 26169143 -191868015 + MLT1G LTR MaLR 1 284 -306 821 239 93 8 chr3 26170180 26170416 -191866742 - MIR SINE MIR -11 251 2 369 309 37 27 chr3 26173112 26173300 -191863858 + HsTC2a DNA Tc2 4 193 -551 347 297 115 10 chr3 26173758 26173967 -191863191 - LTR33A LTR ERVL 0 523 293 228 286 108 59 chr3 26174148 26174351 -191862807 - LTR50 LTR ERVL -582 213 1 1079 160 29 19 chr3 26174621 26174827 -191862331 - MER20 DNA MER1_type -1 218 11 2441 122 20 0 chr3 26175492 26175893 -191861265 + L1MA3 LINE L1 5897 6305 0 23 78 0 0 chr3 26176348 26176399 -191860759 + AT_rich Low_complexity Low_complexity 1 51 0 511 285 93 4 chr3 26176919 26177165 -191859993 + HAL1 LINE L1 1457 1724 -783 262 272 157 88 chr3 26177205 26177466 -191859692 + L2 LINE L2 3035 3313 0 2475 70 0 0 chr3 26177792 26178091 -191859067 + AluY SINE Alu 1 299 -12 554 149 37 8 chr3 26178207 26178341 -191858817 + MER96B DNA MER1_type? 44 181 -236 255 125 0 0 chr3 26178829 26178869 -191858289 + (T)n Simple_repeat Simple_repeat 1 40 0 400 292 4 14 chr3 26179107 26179221 -191857937 - MER5A DNA MER1_type -68 110 11 1602 214 32 22 chr3 26179486 26179856 -191857302 - MLT1A2 LTR MaLR 0 374 1 256 225 25 0 chr3 26180158 26180238 -191856920 - L1 LINE L1 -2204 3942 3861 390 327 0 0 chr3 26180264 26180368 -191856790 - L2 LINE L2 0 3313 3210 331 296 0 0 chr3 26180379 26180494 -191856664 - L1 LINE L1 -2320 3826 3712 367 249 73 68 chr3 26180573 26180982 -191856176 - L1M4 LINE L1 -1627 5221 4811 28 29 0 0 chr3 26181234 26181269 -191855889 + AT_rich Low_complexity Low_complexity 1 35 0 2187 113 3 7 chr3 26181415 26181725 -191855433 - AluSx SINE Alu -3 309 1 25 0 0 0 chr3 26183555 26183580 -191853578 + AT_rich Low_complexity Low_complexity 1 25 0 250 304 45 94 chr3 26183688 26183889 -191853269 + L2 LINE L2 2905 3095 -177 313 316 128 44 chr3 26184199 26184566 -191852592 - L1M4 LINE L1 -5739 1110 713 23 78 0 0 chr3 26184566 26184617 -191852541 + GC_rich Low_complexity Low_complexity 1 51 0 250 345 112 8 chr3 26185405 26185565 -191851593 + MIR3 SINE MIR 23 197 -11 1678 71 2 25 chr3 26185966 26186199 -191850959 - L1M3 LINE L1 -521 5659 5428 1245 95 6 0 chr3 26186199 26186366 -191850792 + L1PA7 LINE L1 5972 6141 -13 1678 71 2 25 chr3 26186366 26186410 -191850748 - L1M3 LINE L1 -752 5428 5385 4260 222 44 54 chr3 26187317 26187448 -191849710 + L1PA16 LINE L1 2182 2313 -5271 2639 123 3 0 chr3 26187448 26187822 -191849336 + THE1C LTR MaLR 1 375 0 4260 222 44 54 chr3 26187822 26189727 -191847431 + L1PA16 LINE L1 2313 4315 -3269 998 139 6 23 chr3 26189727 26189899 -191847259 - L1PB2 LINE L1 -4 6147 5979 674 205 12 81 chr3 26189927 26190185 -191846973 + L1P LINE L1 5081 5320 -826 3528 85 59 19 chr3 26190195 26190769 -191846389 - L1PB2 LINE L1 -172 5979 5383 * 3838 161 38 4 chr3 26190766 26191910 -191845248 + L1PA16 LINE L1 6207 7381 -223 1247 222 8 8 chr3 26192026 26192707 -191844451 + L1M4c LINE L1 2244 3079 -3303 1666 189 9 0 chr3 26192724 26193067 -191844091 + L1MA5 LINE L1 5955 6300 0 3285 169 43 19 chr3 26193073 26193370 -191843788 + L1MB3 LINE L1 5474 5762 -421 2005 187 120 31 chr3 26193370 26193846 -191843312 - MLT2B1 LTR ERVL -2 518 1 3285 169 43 19 chr3 26193846 26194239 -191842919 + L1MB3 LINE L1 5762 6181 -2 36 62 0 0 chr3 26194552 26194616 -191842542 + AT_rich Low_complexity Low_complexity 1 64 0 305 248 62 57 chr3 26194769 26194979 -191842179 + L1ME LINE L1 5615 5825 -296 22 56 0 0 chr3 26195179 26195215 -191841943 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr3 26195296 26195339 -191841819 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr3 26195452 26195490 -191841668 + AT_rich Low_complexity Low_complexity 1 38 0 734 289 14 47 chr3 26195600 26195877 -191841281 + MLT1L LTR MaLR 9 276 -339 705 339 96 10 chr3 26196088 26196474 -191840684 - LTR16A LTR ERVL -24 426 8 21 0 0 0 chr3 26198623 26198644 -191838514 + AT_rich Low_complexity Low_complexity 1 21 0 222 191 0 0 chr3 26198675 26198722 -191838436 + (TG)n Simple_repeat Simple_repeat 2 48 0 1989 137 7 0 chr3 26203270 26203555 -191833603 + AluSx SINE Alu 14 300 -12 622 67 11 0 chr3 26203714 26203803 -191833355 - THE1B LTR MaLR -2 362 273 2131 88 10 0 chr3 26203805 26204113 -191833045 - THE1-int LTR MaLR -1263 317 7 1876 153 120 34 chr3 26204118 26204535 -191832623 - MLT2A2 LTR ERVL 0 453 1 302 312 18 9 chr3 26204549 26204658 -191832500 + L1MEd LINE L1 919 1028 -5091 28 0 0 0 chr3 26204702 26204730 -191832428 + AT_rich Low_complexity Low_complexity 1 28 0 1890 152 10 75 chr3 26204784 26205198 -191831960 + L1MA7 LINE L1 5900 6286 -5 1388 223 59 20 chr3 26205599 26206003 -191831155 + LTR52 LTR ERVL 1 420 -1 538 268 58 11 chr3 26206713 26206903 -191830255 + MIR SINE MIR 17 215 -47 207 0 0 0 chr3 26207291 26207314 -191829844 + (TTG)n Simple_repeat Simple_repeat 2 24 0 407 281 47 22 chr3 26208089 26208367 -191828791 + L1MEd LINE L1 2961 3245 -2884 31 58 0 0 chr3 26208418 26208470 -191828688 + AT_rich Low_complexity Low_complexity 1 52 0 1044 192 126 19 chr3 26208973 26209234 -191827924 - AluJb SINE Alu -17 295 7 306 255 169 93 chr3 26209963 26210241 -191826917 + MLT1I LTR MaLR 85 383 -26 395 288 98 56 chr3 26210247 26210340 -191826818 + L1MEd LINE L1 3595 3683 -2446 2376 110 8 8 chr3 26210340 26210695 -191826463 + THE1A LTR MaLR 1 355 0 10910 102 35 0 chr3 26210695 26212221 -191824937 + THE1A-int LTR MaLR 1 1580 0 2311 132 6 8 chr3 26212221 26212577 -191824581 + THE1A LTR MaLR 1 355 0 395 288 98 56 chr3 26212577 26212696 -191824462 + L1MEd LINE L1 3682 3818 -2311 368 265 79 45 chr3 26212886 26213257 -191823901 + L1MEd LINE L1 1153 1630 -860 1297 214 72 38 chr3 26213261 26213705 -191823453 - L1ME2 LINE L1 -34 6130 5672 1408 180 92 0 chr3 26213920 26214225 -191822933 + MER46B DNA MER2_type 1 208 -28 761 130 294 0 chr3 26214501 26214647 -191822511 - MER5A DNA MER1_type 0 189 1 574 188 0 30 chr3 26214655 26214788 -191822370 - Charlie8 DNA MER1_type -2238 179 51 204 67 0 0 chr3 26214862 26214892 -191822266 + (CA)n Simple_repeat Simple_repeat 2 31 0 824 252 95 13 chr3 26217264 26217459 -191819699 + L1MC4a LINE L1 5574 5804 -2004 979 49 0 0 chr3 26217459 26217582 -191819576 + L1PA4 LINE L1 6031 6153 -2 824 252 95 13 chr3 26217582 26217692 -191819466 + L1MC4a LINE L1 5804 5904 -1904 53 49 0 0 chr3 26217692 26217773 -191819385 + AT_rich Low_complexity Low_complexity 1 81 0 388 333 29 18 chr3 26217780 26217951 -191819207 + MER5A DNA MER1_type 11 183 -6 2290 71 0 0 chr3 26218317 26218646 -191818512 - AluSg SINE Alu 0 329 1 236 229 107 49 chr3 26219271 26219393 -191817765 - LTR16C LTR ERVL -2 489 361 2420 86 0 0 chr3 26219898 26220201 -191816957 + AluY SINE Alu 2 304 -7 342 247 0 11 chr3 26220294 26220387 -191816771 - MLT1H LTR MaLR -2 547 456 472 250 81 60 chr3 26220476 26220760 -191816398 - MLT1H LTR MaLR -259 290 1 22 0 0 0 chr3 26221481 26221503 -191815655 + AT_rich Low_complexity Low_complexity 1 22 0 411 337 29 17 chr3 26221699 26221874 -191815284 + MER5A DNA MER1_type 7 183 -6 2405 90 0 3 chr3 26222232 26222543 -191814615 - AluSg SINE Alu 0 310 1 387 298 42 18 chr3 26223737 26223905 -191813253 - MLT1L LTR MaLR -351 264 93 233 274 142 18 chr3 26223979 26224092 -191813066 + MIR SINE MIR 136 262 0 1520 166 48 48 chr3 26224547 26224842 -191812316 + AluJb SINE Alu 1 295 -17 183 417 38 8 chr3 26225203 26225335 -191811823 + MIR3 SINE MIR 10 145 -63 372 308 17 8 chr3 26225382 26225499 -191811659 + MER5B DNA MER1_type 1 118 -60 512 212 42 48 chr3 26226859 26227024 -191810134 - MER103 DNA DNA -1 165 2 558 239 89 82 chr3 26228321 26228794 -191808364 - MLT1K LTR MaLR 0 476 1 202 237 0 17 chr3 26229035 26229094 -191808064 - L2 LINE L2 -226 3046 2989 389 214 195 88 chr3 26229134 26229442 -191807716 + MLT1J2 LTR MaLR 69 409 -41 1431 175 15 118 chr3 26229563 26229969 -191807189 - MLT1A1 LTR MaLR 0 365 2 910 289 135 35 chr3 26230757 26231284 -191805874 - L2 LINE L2 0 3313 2742 436 73 64 18 chr3 26231564 26231673 -191805485 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 409 234 88 29 chr3 26231884 26232021 -191805137 - LTR16C LTR ERVL -3 488 344 1970 150 37 6 chr3 26232525 26232852 -191804306 + MER1B DNA MER1_type 1 337 0 1145 264 33 29 chr3 26232976 26233422 -191803736 + LTR16A LTR ERVL 1 454 -3 414 254 67 34 chr3 26234193 26234402 -191802756 + L1ME4a LINE L1 5689 5904 -217 441 281 156 5 chr3 26234654 26234853 -191802305 + L2 LINE L2 2011 2239 -1075 1154 260 39 10 chr3 26235285 26235593 -191801565 + L2 LINE L2 2218 2534 -780 320 277 129 0 chr3 26235598 26235699 -191801459 + L2 LINE L2 3137 3250 -22 1771 162 56 42 chr3 26235937 26236369 -191800789 - MLT1D LTR MaLR -35 470 33 411 242 30 0 chr3 26236381 26236480 -191800678 - L1MC4 LINE L1 -1109 6933 6832 354 348 30 45 chr3 26236481 26236682 -191800476 - MIR SINE MIR -64 198 1 22 56 0 0 chr3 26236893 26236929 -191800229 + AT_rich Low_complexity Low_complexity 1 36 0 387 238 266 0 chr3 26238178 26238321 -191798837 - MER5A DNA MER1_type 0 189 9 288 0 0 0 chr3 26239214 26239246 -191797912 + (TG)n Simple_repeat Simple_repeat 2 33 0 537 152 0 1 chr3 26239976 26240067 -191797091 - MER33 DNA MER1_type -250 74 1 2323 112 3 0 chr3 26240150 26240455 -191796703 + AluSx SINE Alu 1 306 -6 260 341 124 0 chr3 26240894 26241023 -191796135 + MIR SINE MIR 46 190 -72 374 217 0 0 chr3 26241100 26241169 -191795989 - L2 LINE L2 -19 3253 3185 333 0 0 0 chr3 26243526 26243563 -191793595 + (TG)n Simple_repeat Simple_repeat 1 37 0 1167 173 25 30 chr3 26244072 26244309 -191792849 + MER46A DNA MER2_type 1 236 0 432 217 16 31 chr3 26244611 26244740 -191792418 + MLT1J LTR MaLR 385 511 0 253 293 0 0 chr3 26245058 26245116 -191792042 - MIR SINE MIR -114 148 91 290 258 72 0 chr3 26245500 26245597 -191791561 + Charlie8 DNA MER1_type 386 489 -1928 284 226 0 0 chr3 26245597 26245659 -191791499 + Charlie8 DNA MER1_type 2353 2414 -3 1043 154 0 59 chr3 26245899 26246119 -191791039 - MER3 DNA MER1_type 0 209 3 583 221 110 37 chr3 26246324 26246487 -191790671 - MER5B DNA MER1_type -2 176 2 25 31 0 0 chr3 26246614 26246646 -191790512 + AT_rich Low_complexity Low_complexity 1 32 0 349 266 26 87 chr3 26246725 26247007 -191790151 + L2 LINE L2 2734 3053 -219 369 317 92 52 chr3 26247071 26247396 -191789762 + MLT1I LTR MaLR 68 405 -4 2371 41 0 0 chr3 26247631 26247925 -191789233 + L1P LINE L1 4048 4341 -1805 240 35 0 0 chr3 26248226 26248255 -191788903 + (CAA)n Simple_repeat Simple_repeat 2 30 0 463 307 160 0 chr3 26249562 26249774 -191787384 + MIR SINE MIR 17 262 0 2441 226 52 69 chr3 26250222 26251112 -191786046 - L1ME1 LINE L1 -2 6164 5260 2474 24 40 7 chr3 26251112 26251408 -191785750 + AluY SINE Alu 1 306 -5 189 107 0 0 chr3 26251414 26251442 -191785716 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 2441 226 52 69 chr3 26251442 26251540 -191785618 - L1ME1 LINE L1 -911 5255 5157 1298 123 90 14 chr3 26251540 26251817 -191785341 - L1MA8 LINE L1 -10 6281 5984 2441 226 52 69 chr3 26251817 26252306 -191784852 - L1ME1 LINE L1 -1009 5157 4714 251 279 33 49 chr3 26252792 26252914 -191784244 - MIR SINE MIR -16 246 127 1689 73 0 0 chr3 26252991 26253211 -191783947 + L1PA5 LINE L1 5935 6154 0 2468 49 7 10 chr3 26253537 26253841 -191783317 - AluY SINE Alu -8 303 1 324 178 22 67 chr3 26254150 26254240 -191782918 + MER5A DNA MER1_type 3 88 -101 191 279 0 0 chr3 26254806 26254849 -191782309 - MIR3 SINE MIR -11 197 155 343 283 87 0 chr3 26254914 26255052 -191782106 - MER20B DNA MER1_type -628 155 6 201 256 0 0 chr3 26255056 26255099 -191782059 - MIR3 SINE MIR -54 154 112 407 256 111 17 chr3 26255142 26255259 -191781899 + L2 LINE L2 3186 3313 0 480 257 79 53 chr3 26256310 26256462 -191780696 - MLT1I LTR MaLR 0 409 278 2335 144 7 61 chr3 26257802 26258259 -191778899 + MSTB1 LTR MaLR 1 432 0 238 308 59 53 chr3 26259242 26259411 -191777747 - L2 LINE L2 -170 3102 2933 230 359 57 13 chr3 26259564 26259723 -191777435 - L2 LINE L2 -535 2779 2614 1276 242 76 18 chr3 26259732 26260112 -191777046 + MLT1I LTR MaLR 1 402 -7 180 400 27 0 chr3 26260114 26260264 -191776894 - L2 LINE L2 -704 2610 2457 371 263 32 0 chr3 26262597 26262692 -191774466 - L3 LINE CR1 -2 1575 1478 195 162 0 0 chr3 26263516 26263553 -191773605 + T-rich Low_complexity Low_complexity 1 37 0 336 314 125 27 chr3 26263915 26264284 -191772874 - L1ME1 LINE L1 -286 5880 5476 27 49 0 0 chr3 26264816 26264857 -191772301 + AT_rich Low_complexity Low_complexity 1 41 0 220 220 0 0 chr3 26265081 26265131 -191772027 + (TTA)n Simple_repeat Simple_repeat 1 50 0 242 311 59 0 chr3 26265300 26265419 -191771739 - HAL1 LINE L1 -855 1652 1527 475 293 63 59 chr3 26265466 26265767 -191771391 - L1MEc LINE L1 -5211 995 697 207 0 0 0 chr3 26265767 26265790 -191771368 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 475 293 63 59 chr3 26265790 26266154 -191771004 - L1MEc LINE L1 -5509 697 382 231 378 60 32 chr3 26267204 26267453 -191769705 - L2 LINE L2 -530 2784 2529 330 87 0 0 chr3 26267599 26267645 -191769513 + (TAA)n Simple_repeat Simple_repeat 2 47 0 680 242 173 57 chr3 26267649 26268141 -191769017 + MLT1H1 LTR MaLR 7 555 0 473 311 149 22 chr3 26268141 26268363 -191768795 - MIR SINE MIR -3 259 10 1665 255 28 34 chr3 26268365 26268859 -191768299 - LTR16C LTR ERVL 0 491 1 353 262 56 37 chr3 26270283 26270390 -191766768 + MIR3 SINE MIR 15 123 -85 2406 74 0 0 chr3 26271572 26271871 -191765287 - AluSg SINE Alu -11 299 1 294 204 56 92 chr3 26272679 26272821 -191764337 - L1ME LINE L1 -296 5825 5689 594 262 87 58 chr3 26273382 26273515 -191763643 - L2 LINE L2 0 3313 3185 1413 183 55 124 chr3 26273515 26274056 -191763102 - MLT1D LTR MaLR -1 504 1 594 262 87 58 chr3 26274056 26274231 -191762927 - L2 LINE L2 -128 3185 2996 261 275 0 14 chr3 26274285 26274354 -191762804 + MLT1K LTR MaLR 180 247 -341 2497 74 0 0 chr3 26274568 26274877 -191762281 + AluY SINE Alu 1 309 -2 426 20 0 0 chr3 26276204 26276255 -191760903 + (TG)n Simple_repeat Simple_repeat 1 51 0 505 188 137 67 chr3 26277668 26277887 -191759271 + LTR33 LTR ERVL 270 521 0 206 287 0 85 chr3 26278461 26278590 -191758568 + C-rich Low_complexity Low_complexity 2 119 0 785 204 39 29 chr3 26279373 26279579 -191757579 - MER3 DNA MER1_type 0 209 2 196 179 0 36 chr3 26280141 26280197 -191756961 + (CATA)n Simple_repeat Simple_repeat 3 56 0 461 221 41 16 chr3 26281469 26281591 -191755567 + MLT1H LTR MaLR 95 219 -330 630 48 0 0 chr3 26282121 26282204 -191754954 - AluY SINE Alu -227 83 1 260 282 84 46 chr3 26283385 26283516 -191753642 + L2 LINE L2 3178 3313 0 2063 189 47 20 chr3 26283543 26284034 -191753124 - Charlie4a DNA MER1_type 0 508 5 327 323 89 70 chr3 26284591 26284907 -191752251 + HAL1b LINE L1 471 792 -556 24 53 0 0 chr3 26285265 26285303 -191751855 + AT_rich Low_complexity Low_complexity 1 38 0 333 265 111 49 chr3 26285915 26286240 -191750918 + L1MEd LINE L1 561 905 -5214 21 0 0 0 chr3 26286245 26286266 -191750892 + AT_rich Low_complexity Low_complexity 1 21 0 2026 145 3 7 chr3 26286267 26286570 -191750588 + AluSx SINE Alu 1 302 -10 1134 247 86 29 chr3 26288022 26288532 -191748626 - HAL1 LINE L1 -905 1602 1064 1063 194 74 0 chr3 26288541 26288757 -191748401 + MIR SINE MIR 26 257 -5 329 172 0 0 chr3 26288773 26288831 -191748327 - HAL1 LINE L1 -1478 1029 972 266 231 55 0 chr3 26288918 26289009 -191748149 - MLT1E2 LTR MaLR -10 616 521 261 57 0 0 chr3 26289286 26289321 -191747837 + (TG)n Simple_repeat Simple_repeat 2 36 0 1662 190 25 127 chr3 26289321 26289474 -191747684 - MLT1D LTR MaLR -3 502 335 2418 51 6 22 chr3 26289474 26289786 -191747372 - AluY SINE Alu 0 311 5 1662 190 25 127 chr3 26289786 26290191 -191746967 - MLT1D LTR MaLR -170 335 1 402 323 65 58 chr3 26290216 26290628 -191746530 - HAL1 LINE L1 -1741 766 352 260 313 88 18 chr3 26290916 26291143 -191746015 + L1M4 LINE L1 4733 4975 -1171 23 33 0 0 chr3 26291303 26291333 -191745825 + AT_rich Low_complexity Low_complexity 1 30 0 216 152 0 0 chr3 26392271 26392304 -191644854 - MIR SINE MIR -10 252 220 262 301 140 0 chr3 26392891 26392984 -191644174 - MER94 DNA DNA -1 133 28 200 367 42 33 chr3 26393311 26393431 -191643727 + L2 LINE L2 3145 3265 -7 401 273 64 48 chr3 26395060 26395247 -191641911 + MIR3 SINE MIR 19 208 0 237 98 0 0 chr3 26396035 26396076 -191641082 + (A)n Simple_repeat Simple_repeat 1 41 0 213 121 0 0 chr3 26396997 26397030 -191640128 + (A)n Simple_repeat Simple_repeat 1 33 0 459 0 0 0 chr3 26397033 26397084 -191640074 + (CA)n Simple_repeat Simple_repeat 1 51 0 211 170 0 43 chr3 26398313 26398360 -191638798 + CT-rich Low_complexity Low_complexity 3 47 0 474 273 35 42 chr3 26399083 26399226 -191637932 - MIR3 SINE MIR -34 174 33 1035 172 10 34 chr3 26401580 26401789 -191635369 - MER3 DNA MER1_type -5 204 1 210 294 0 0 chr3 26402823 26402874 -191634284 - MIR3 SINE MIR -7 201 151 295 330 56 30 chr3 26402977 26403174 -191633984 - MIR3 SINE MIR -4 204 3 607 286 70 46 chr3 26403681 26403922 -191633236 + MIR SINE MIR 10 256 -6 1325 208 124 67 chr3 26403995 26404471 -191632687 + MLT1D LTR MaLR 3 505 0 246 128 0 0 chr3 26405146 26405185 -191631973 + (A)n Simple_repeat Simple_repeat 1 39 0 1544 196 32 4 chr3 26405693 26405973 -191631185 + AluJb SINE Alu 1 288 -24 330 269 110 44 chr3 26406022 26406204 -191630954 - MARNA DNA Mariner -210 376 183 328 267 114 58 chr3 26406627 26406823 -191630335 + MIR3 SINE MIR 9 214 -48 233 217 0 0 chr3 26407068 26407114 -191630044 + A-rich Low_complexity Low_complexity 5 50 0 318 50 0 0 chr3 26407152 26407192 -191629966 + (GA)n Simple_repeat Simple_repeat 1 40 0 201 258 98 45 chr3 26408194 26408326 -191628832 + L2 LINE L2 1379 1517 -1797 373 125 16 0 chr3 26408449 26408513 -191628645 - MSTD LTR MaLR 0 396 332 491 168 198 0 chr3 26409137 26409238 -191627920 - MER5B DNA MER1_type -57 121 1 321 208 185 77 chr3 26409684 26409778 -191627380 + MER5A DNA MER1_type 35 149 -40 809 112 0 9 chr3 26409778 26409946 -191627212 + FLAM_C SINE Alu 2 168 0 321 208 185 77 chr3 26409946 26409980 -191627178 + MER5A DNA MER1_type 149 178 -11 199 298 0 85 chr3 26410674 26410768 -191626390 - MIR SINE MIR -60 202 117 1196 238 107 56 chr3 26410907 26411357 -191625801 + L2 LINE L2 2841 3313 0 372 293 47 0 chr3 26411355 26411461 -191625697 - MIR SINE MIR -65 197 87 * 725 152 27 38 chr3 26411463 26411647 -191625511 + MER53 DNA DNA 1 182 -7 373 311 43 51 chr3 26412930 26413187 -191623971 + MLT1K LTR MaLR 169 423 -165 269 273 0 0 chr3 26413314 26413380 -191623778 + MLT1K LTR MaLR 517 582 -6 198 238 16 79 chr3 26413397 26413460 -191623698 - MIR SINE MIR -111 151 93 653 231 98 0 chr3 26413541 26413744 -191623414 + MER112 DNA MER1_type 1 223 -37 860 311 202 10 chr3 26414051 26414373 -191622785 + L2 LINE L2 2237 2496 -817 2217 124 21 32 chr3 26414373 26414752 -191622406 - THE1C LTR MaLR 0 375 1 860 311 202 10 chr3 26414752 26415253 -191621905 + L2 LINE L2 2496 3217 -96 370 268 179 0 chr3 26415253 26415421 -191621737 - MER110 LTR ERV1 0 491 294 4232 46 51 2 chr3 26415439 26415984 -191621174 - L1PA7 LINE L1 -8 6146 5575 2106 131 20 0 chr3 26415998 26416303 -191620855 - AluJb SINE Alu -1 311 1 329 192 192 24 chr3 26416303 26416428 -191620730 - MER110A LTR ERV1 -127 341 196 305 226 173 12 chr3 26416489 26416657 -191620501 - MER110A LTR ERV1 -273 195 1 353 233 14 0 chr3 26416674 26416747 -191620411 + MIR SINE MIR 189 262 0 1939 137 60 64 chr3 26417290 26417759 -191619399 - LTR37B LTR ERV1 -1 467 1 207 0 0 0 chr3 26417893 26417916 -191619242 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 233 116 0 23 chr3 26420418 26420461 -191616697 + (TC)n Simple_repeat Simple_repeat 1 42 0 2423 184 39 28 chr3 26420536 26421080 -191616078 + MER44D DNA MER2_type 1 605 0 319 206 98 11 chr3 26421121 26421213 -191615945 - L1MCa LINE L1 -4335 2091 1992 309 183 17 9 chr3 26421218 26421333 -191615825 + (TA)n Simple_repeat Simple_repeat 2 117 0 213 178 0 22 chr3 26422171 26422216 -191614942 - L2 LINE L2 0 3313 3270 236 229 76 93 chr3 26425230 26425293 -191611865 + MER5B DNA MER1_type 1 63 -115 513 0 0 0 chr3 26425293 26425350 -191611808 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 236 229 76 93 chr3 26425350 26425404 -191611754 + MER5B DNA MER1_type 63 116 -62 250 171 0 0 chr3 26425660 26425701 -191611457 - MIR SINE MIR -71 137 97 425 294 46 111 chr3 26425896 26426264 -191610894 - L2 LINE L2 0 3272 2929 836 312 90 16 chr3 26426583 26427151 -191610007 - MLT1L LTR MaLR -2 586 9 548 295 193 0 chr3 26427942 26428149 -191609009 + MIR SINE MIR 1 247 -15 2265 152 9 37 chr3 26428561 26428888 -191608270 + MSTB1 LTR MaLR 5 319 -113 2861 7 0 0 chr3 26428888 26429198 -191607960 - AluYa5 SINE Alu -1 310 1 2265 152 9 37 chr3 26429198 26429303 -191607855 + MSTB1 LTR MaLR 319 425 -7 298 296 112 13 chr3 26429319 26429471 -191607687 - MIR SINE MIR -48 214 48 521 243 73 73 chr3 26429582 26429854 -191607304 - MLT1H LTR MaLR -221 328 57 948 131 65 0 chr3 26430415 26430568 -191606590 + MER5A DNA MER1_type 1 163 -26 30 0 0 0 chr3 26431308 26431338 -191605820 + AT_rich Low_complexity Low_complexity 1 30 0 2251 106 0 3 chr3 26431499 26431813 -191605345 - AluSc SINE Alu 0 309 1 201 196 0 0 chr3 26432465 26432511 -191604647 + GA-rich Low_complexity Low_complexity 4 49 0 31 0 0 0 chr3 26432557 26432588 -191604570 + AT_rich Low_complexity Low_complexity 1 31 0 241 333 95 24 chr3 26433123 26433249 -191603909 + L2 LINE L2 3138 3272 0 473 249 44 68 chr3 26434275 26434480 -191602678 + MIR SINE MIR 8 207 -55 232 195 0 0 chr3 26434544 26434585 -191602573 - Alu SINE Alu -176 126 86 795 230 83 15 chr3 26434585 26434789 -191602369 - AluJo SINE Alu -92 220 3 1279 208 27 46 chr3 26434847 26435213 -191601945 + L1M4 LINE L1 3976 4334 -1812 466 303 7 14 chr3 26435214 26435359 -191601799 + MIR SINE MIR 110 253 -9 735 259 162 44 chr3 26435375 26435893 -191601265 + L3 LINE CR1 858 1436 -141 267 327 35 9 chr3 26435898 26436011 -191601147 - MIR SINE MIR -111 151 36 7483 28 2 3 chr3 26437447 26438692 -191598466 + L1PA4 LINE L1 4908 6151 -4 326 294 33 0 chr3 26438920 26439012 -191598146 + MIR SINE MIR 53 147 -61 202 200 0 0 chr3 26439259 26439299 -191597859 + CT-rich Low_complexity Low_complexity 2 41 0 296 217 75 19 chr3 26439627 26439733 -191597425 - MER103 DNA DNA -45 121 10 19275 158 21 6 chr3 26439767 26443216 -191593942 + L1M1 LINE L1 10 3512 -4053 2275 97 15 59 chr3 26443216 26443608 -191593550 + L1MA1 LINE L1 5928 6302 0 19275 158 21 6 chr3 26443608 26443628 -191593530 + L1M1 LINE L1 3512 3530 -4035 260 268 37 0 chr3 26443890 26443972 -191593186 - MLT1K LTR MaLR -23 565 481 679 288 57 5 chr3 26444013 26444225 -191592933 - MLT1K LTR MaLR -186 402 180 344 181 14 14 chr3 26444254 26444326 -191592832 - MLT1K LTR MaLR -505 83 12 459 271 8 31 chr3 26444938 26445067 -191592091 - L2 LINE L2 0 3313 3188 1959 137 3 40 chr3 26445228 26445578 -191591580 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr3 26447832 26447860 -191589298 + AT_rich Low_complexity Low_complexity 1 28 0 238 233 86 55 chr3 26448885 26449048 -191588110 + HAL1 LINE L1 1002 1169 -1338 771 273 101 12 chr3 26449070 26449557 -191587601 + HAL1 LINE L1 1234 1763 -744 311 233 10 124 chr3 26450092 26450294 -191586864 + LTR16A LTR ERVL 266 444 -6 320 301 0 0 chr3 26450452 26450545 -191586613 + HAL1 LINE L1 1823 1915 -592 340 217 174 9 chr3 26450635 26450750 -191586408 + MIR SINE MIR 79 212 -50 22 35 0 0 chr3 26452189 26452218 -191584940 + AT_rich Low_complexity Low_complexity 1 29 0 191 61 30 0 chr3 26453151 26453184 -191583974 + (CA)n Simple_repeat Simple_repeat 2 35 0 1435 237 122 37 chr3 26453474 26453697 -191583461 + L2 LINE L2 2427 2630 -683 1922 149 7 13 chr3 26453697 26453998 -191583160 + AluSq SINE Alu 1 299 -14 1435 237 122 37 chr3 26453998 26454355 -191582803 + L2 LINE L2 2630 3062 -251 572 210 198 0 chr3 26455047 26455209 -191581949 + L2 LINE L2 3103 3296 -17 1702 169 10 24 chr3 26455217 26455507 -191581651 + AluJo SINE Alu 1 286 -26 279 0 0 0 chr3 26455509 26455540 -191581618 + (TG)n Simple_repeat Simple_repeat 2 32 0 223 237 250 0 chr3 26456010 26456086 -191581072 - MIR SINE MIR 0 262 168 1558 205 103 140 chr3 26456460 26456841 -191580317 + Charlie7 DNA MER1_type 490 884 -1728 2399 87 10 10 chr3 26456841 26457153 -191580005 - AluSq SINE Alu -1 312 1 1558 205 103 140 chr3 26457153 26458040 -191579118 + Charlie7 DNA MER1_type 884 1711 -901 2781 0 0 0 chr3 26458984 26459282 -191577876 - AluYa5 SINE Alu -13 298 1 1386 19 0 0 chr3 26459409 26459564 -191577594 - AluY SINE Alu 0 311 157 1380 233 94 40 chr3 26459564 26460116 -191577042 + Charlie7 DNA MER1_type 1855 2455 -157 2385 97 0 0 chr3 26460116 26460416 -191576742 - AluSc SINE Alu -9 300 1 1380 233 94 40 chr3 26460416 26460566 -191576592 + Charlie7 DNA MER1_type 2455 2595 -17 711 269 0 12 chr3 26460577 26460748 -191576410 + MER5A DNA MER1_type 1 169 -20 659 236 152 11 chr3 26461546 26461737 -191575421 - MIR SINE MIR -18 244 27 569 79 11 22 chr3 26463277 26463366 -191573792 - L1PB4 LINE L1 -556 5600 5513 * 815 153 60 22 chr3 26463360 26463543 -191573615 + L1PB4 LINE L1 5587 5776 -380 2090 161 15 10 chr3 26464838 26465229 -191571929 + L1PB4 LINE L1 5763 6155 -1 864 268 9 18 chr3 26465302 26465522 -191571636 - MIR SINE MIR 0 262 45 2259 121 0 0 chr3 26465586 26465891 -191571267 + AluSx SINE Alu 1 305 -7 309 278 0 0 chr3 26465892 26465964 -191571194 - MIR SINE MIR -189 73 2 291 289 77 51 chr3 26466779 26466935 -191570223 + MLT1L LTR MaLR 425 584 -31 784 198 97 34 chr3 26467149 26467356 -191569802 - LTR50 LTR ERVL -575 220 1 450 316 40 20 chr3 26468568 26468720 -191568438 + MIR SINE MIR 12 166 -96 325 268 149 57 chr3 26468735 26469105 -191568053 - MLT1J LTR MaLR -33 478 75 286 194 97 43 chr3 26469161 26469254 -191567904 + MIR SINE MIR 158 255 -7 689 272 93 57 chr3 26469314 26469615 -191567543 + MLT1I LTR MaLR 98 409 0 392 303 14 28 chr3 26470196 26470341 -191566817 - MIR SINE MIR -19 243 101 268 365 19 0 chr3 26470376 26470480 -191566678 - MIR SINE MIR -153 109 4 23 54 0 0 chr3 26470958 26470995 -191566163 + AT_rich Low_complexity Low_complexity 1 37 0 315 0 0 0 chr3 26471051 26471086 -191566072 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1062 267 29 3 chr3 26471151 26471466 -191565692 + L1MC/D LINE L1 5454 5776 -2032 251 219 31 47 chr3 26471696 26471760 -191565398 - L2 LINE L2 0 3272 3210 18537 131 21 11 chr3 26471844 26474863 -191562295 + L1MA3 LINE L1 17 3065 -4500 23675 37 42 3 chr3 26474869 26477987 -191559171 + L1P LINE L1 4 3244 -2902 1712 19 14 14 chr3 26478011 26478224 -191558934 + L1PA2 LINE L1 5943 6155 0 619 124 0 8 chr3 26478225 26478346 -191558812 + L1MA3 LINE L1 3053 3172 -4393 * 14935 159 19 10 chr3 26478335 26482611 -191554547 + L1MA3 LINE L1 3411 7724 0 517 245 9 9 chr3 26483200 26483306 -191553852 - L2 LINE L2 0 3313 3208 2358 180 102 21 chr3 26483598 26484094 -191553064 - MLT1F1 LTR MaLR -2 565 24 2248 110 0 10 chr3 26484094 26484395 -191552763 - AluSx SINE Alu -14 298 1 2358 180 102 21 chr3 26484395 26484419 -191552739 - MLT1F1 LTR MaLR -543 24 3 569 265 50 69 chr3 26485223 26485483 -191551675 + LTR67 LTR ERVL 40 294 -263 249 269 46 31 chr3 26485582 26485712 -191551446 + LTR67 LTR ERVL 352 483 -74 2108 117 53 39 chr3 26486039 26486398 -191550760 + THE1B LTR MaLR 1 364 0 2296 92 10 0 chr3 26486645 26486948 -191550210 - AluY SINE Alu -5 306 1 502 272 38 19 chr3 26486980 26487138 -191550020 + L2 LINE L2 3153 3313 0 307 347 105 0 chr3 26487209 26487376 -191549782 - MIR3 SINE MIR -59 149 3 478 303 23 46 chr3 26488080 26488352 -191548806 + MLT1I LTR MaLR 51 320 -89 362 243 39 10 chr3 26488359 26488462 -191548696 + MLT1I LTR MaLR 442 547 -2 520 281 58 36 chr3 26490117 26490256 -191546902 - MER91A DNA MER1_type -36 160 19 1196 229 134 58 chr3 26490547 26491108 -191546050 + MLT1E LTR MaLR 1 515 -27 925 267 92 44 chr3 26491237 26491626 -191545532 - MLT1E LTR MaLR -185 408 1 199 344 79 32 chr3 26491693 26491882 -191545276 + L2 LINE L2 2558 2755 -559 2456 136 23 59 chr3 26491911 26491952 -191545206 - MSTB LTR MaLR -1 425 384 2178 132 3 0 chr3 26491952 26492262 -191544896 + AluSx SINE Alu 1 311 -1 2456 136 23 59 chr3 26492262 26492661 -191544497 - MSTB LTR MaLR -42 384 1 235 290 51 23 chr3 26492691 26492815 -191544343 + L2 LINE L2 2858 2985 -287 2217 101 0 31 chr3 26492967 26493284 -191543874 - AluSx SINE Alu -5 307 1 362 246 237 9 chr3 26494019 26494133 -191543025 - MIR SINE MIR -46 216 77 191 256 56 44 chr3 26495065 26495155 -191542003 + L2 LINE L2 2668 2758 -556 768 213 21 53 chr3 26495168 26495356 -191541802 - MER5A DNA MER1_type -6 183 2 1135 314 156 28 chr3 26495389 26497297 -191539861 + L2 LINE L2 833 3054 -218 697 143 0 0 chr3 26497395 26497493 -191539665 + AluJb SINE Alu 196 293 -19 217 269 39 39 chr3 26497520 26497598 -191539560 + L2 LINE L2 3235 3312 -1 767 256 77 16 chr3 26497662 26497908 -191539250 - MIR SINE MIR -1 261 1 860 220 55 22 chr3 26498036 26498218 -191538940 - MER5A DNA MER1_type -1 188 1 493 312 19 39 chr3 26498489 26498694 -191538464 - MIR SINE MIR -50 212 12 1630 183 0 27 chr3 26500827 26501127 -191536031 + AluJo SINE Alu 1 292 -20 2349 118 0 0 chr3 26501186 26501499 -191535659 + AluSq SINE Alu 1 313 0 274 258 80 20 chr3 26501721 26501872 -191535286 + L2 LINE L2 2511 2670 -644 1163 182 104 9 chr3 26501923 26502154 -191535004 + AluJo SINE Alu 1 253 -59 241 295 38 19 chr3 26502155 26502260 -191534898 + L2 LINE L2 2701 2807 -507 227 360 0 0 chr3 26502920 26503009 -191534149 - L2 LINE L2 0 3313 3225 484 302 102 42 chr3 26503144 26503584 -191533574 + L1ME4a LINE L1 4219 4720 -1426 2306 237 43 38 chr3 26503584 26504171 -191532987 - MLT1E LTR MaLR 0 593 4 484 302 102 42 chr3 26504171 26504445 -191532713 + L1ME4a LINE L1 4720 4976 -1170 259 283 111 0 chr3 26504604 26504703 -191532455 - MIR SINE MIR -39 223 114 2627 224 14 36 chr3 26504733 26505313 -191531845 - MLT1F1 LTR MaLR 0 567 1 180 194 28 0 chr3 26505313 26505349 -191531809 - MIR SINE MIR -210 52 16 499 120 10 100 chr3 26505389 26505489 -191531669 + MER7C DNA MER2_type 62 152 -450 * 1603 131 8 0 chr3 26505477 26505714 -191531444 + MER7C DNA MER2_type 364 602 0 447 332 61 32 chr3 26505734 26506114 -191531044 + L1ME4a LINE L1 4967 5363 -783 852 235 0 0 chr3 26506117 26506287 -191530871 + AluJb SINE Alu 138 307 -5 855 267 96 54 chr3 26506319 26506362 -191530796 + L1ME4a LINE L1 5391 5431 -690 1670 151 17 41 chr3 26506362 26506653 -191530505 + AluSx SINE Alu 1 284 -28 213 39 0 0 chr3 26506660 26506686 -191530472 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 855 267 96 54 chr3 26506686 26507279 -191529879 + L1ME4a LINE L1 5436 6062 -59 324 302 38 20 chr3 26508870 26509011 -191528147 + MIR SINE MIR 16 160 -64 245 91 0 23 chr3 26510200 26510244 -191526914 - MADE1 DNA Mariner -37 43 1 263 299 103 38 chr3 26510244 26510428 -191526730 - MLT1J2 LTR MaLR -2 448 253 416 293 0 32 chr3 26511099 26511222 -191525936 + MIR3 SINE MIR 49 167 -41 2111 132 0 0 chr3 26511296 26511585 -191525573 - AluSc SINE Alu -20 289 1 324 335 45 39 chr3 26512205 26512360 -191524798 - L2 LINE L2 -534 2780 2625 926 203 122 27 chr3 26512655 26512950 -191524208 - MER5C DNA MER1_type -1 323 1 196 262 213 21 chr3 26513543 26513684 -191523474 - MIR SINE MIR -2 260 93 2625 163 29 98 chr3 26513872 26513962 -191523196 - L1MD3 LINE L1 0 7995 7900 258 114 23 0 chr3 26513962 26514006 -191523152 + Charlie1 DNA MER1_type 2283 2327 -434 2625 163 29 98 chr3 26514006 26514031 -191523127 - L1MD3 LINE L1 -95 7900 7875 3790 71 2 0 chr3 26514031 26514496 -191522662 - L1PA8 LINE L1 -1 6171 5706 2625 163 29 98 chr3 26514496 26515026 -191522132 - L1MD3 LINE L1 -120 7875 7188 505 202 78 98 chr3 26515258 26515451 -191521707 + MLT1J LTR MaLR 7 195 -316 1501 191 65 46 chr3 26515504 26515917 -191521241 - Charlie4a DNA MER1_type 0 508 88 7240 151 84 12 chr3 26516184 26516571 -191520587 - Charlie1a DNA MER1_type -1310 1451 1093 567 29 0 0 chr3 26516571 26516640 -191520518 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 7240 151 84 12 chr3 26516640 26517605 -191519553 - Charlie1a DNA MER1_type -1668 1093 1 1007 204 21 39 chr3 26517754 26518034 -191519124 + pTR5 LTR ERV1 743 1017 -1421 6688 99 127 102 chr3 26518324 26519713 -191517445 + pTR5 LTR ERV1 1015 2438 0 760 197 27 58 chr3 26520117 26520179 -191516979 - MER5A DNA MER1_type 0 189 127 2357 88 3 3 chr3 26520179 26520484 -191516674 + AluSp SINE Alu 1 305 -8 760 197 27 58 chr3 26520484 26520609 -191516549 - MER5A DNA MER1_type -62 127 8 821 284 32 28 chr3 26521128 26521292 -191515866 + MIR SINE MIR 8 175 -87 1412 159 45 139 chr3 26521292 26521695 -191515463 + MLT1A1 LTR MaLR 1 365 0 821 284 32 28 chr3 26521695 26521780 -191515378 + MIR SINE MIR 175 258 -4 1819 151 36 20 chr3 26521902 26522206 -191514952 - AluSq SINE Alu -4 309 1 2288 136 40 11 chr3 26522795 26523149 -191514009 - THE1B LTR MaLR 0 364 1 226 364 23 11 chr3 26523259 26523347 -191513811 + L2 LINE L2 323 411 -2903 254 382 31 18 chr3 26523386 26523611 -191513547 + L2 LINE L2 2189 2416 -898 1354 192 16 49 chr3 26523611 26523832 -191513326 + MLT1F LTR MaLR 255 429 -76 2438 87 3 0 chr3 26523832 26524131 -191513027 - AluSp SINE Alu -13 300 1 1354 192 16 49 chr3 26524131 26524200 -191512958 + MLT1F LTR MaLR 429 499 -6 184 313 0 0 chr3 26524203 26524251 -191512907 - L2 LINE L2 -69 3244 3197 491 359 90 16 chr3 26524347 26524712 -191512446 + L2 LINE L2 711 1102 -2212 512 269 20 27 chr3 26524801 26524950 -191512208 + LTR16C LTR ERVL 85 232 -259 319 324 55 28 chr3 26525262 26525444 -191511714 + L2 LINE L2 1891 2077 -1237 214 301 65 41 chr3 26525487 26525610 -191511548 + L2 LINE L2 2550 2675 -639 1648 250 72 58 chr3 26526205 26526788 -191510370 - MLT1E LTR MaLR 0 593 3 1460 244 140 32 chr3 26526907 26527399 -191509759 + MLT1H LTR MaLR 1 545 -4 215 53 0 53 chr3 26528163 26528201 -191508957 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1121 182 36 9 chr3 26528528 26528753 -191508405 - MER96B DNA MER1_type? -3 414 184 2423 89 0 0 chr3 26529970 26530272 -191506886 - AluSq SINE Alu -11 302 1 2452 86 0 0 chr3 26530861 26531163 -191505995 - AluSx SINE Alu -10 302 1 329 296 55 27 chr3 26531195 26531452 -191505706 - L1M4 LINE L1 -3045 3101 2838 2862 163 48 6 chr3 26531458 26531981 -191505177 + L1MB7 LINE L1 5639 6183 -1 302 164 33 0 chr3 26532124 26532185 -191504973 - L1ME3A LINE L1 -17 6153 6091 2582 46 0 3 chr3 26532272 26532578 -191504580 - AluY SINE Alu -6 305 1 257 208 0 0 chr3 26532593 26532641 -191504517 + LTR16A1 LTR ERVL 410 457 0 224 284 25 37 chr3 26533017 26533098 -191504060 + MIR SINE MIR 70 149 -59 632 234 137 37 chr3 26533865 26534215 -191502943 + L1MC4 LINE L1 7658 8042 0 223 162 0 0 chr3 26534299 26534336 -191502822 + L2 LINE L2 3020 3056 -257 287 264 61 91 chr3 26534805 26534912 -191502246 - L2 LINE L2 0 3313 3213 906 225 115 10 chr3 26534912 26535112 -191502046 + MER58A DNA MER1_type 3 223 -1 287 264 61 91 chr3 26535112 26535201 -191501957 - L2 LINE L2 -100 3213 3123 375 345 52 15 chr3 26535390 26535657 -191501501 - L2 LINE L2 -411 2903 2627 1331 263 167 30 chr3 26535663 26536183 -191500975 + MLT2F LTR ERVL 3 612 -51 2101 108 0 4 chr3 26536183 26536482 -191500676 - AluSc SINE Alu 0 298 1 1331 263 167 30 chr3 26536482 26536534 -191500624 + MLT2F LTR ERVL 612 655 -8 246 324 15 0 chr3 26536538 26536606 -191500552 - L2 LINE L2 -687 2627 2559 672 285 40 60 chr3 26536620 26536918 -191500240 + MLT1I LTR MaLR 33 324 -85 229 265 176 10 chr3 26536957 26537059 -191500099 - L2 LINE L2 -742 2572 2454 948 260 150 59 chr3 26537917 26538300 -191498858 + MLT2F LTR ERVL 101 544 -119 2451 76 3 0 chr3 26538300 26538601 -191498557 + AluY SINE Alu 1 302 -9 948 260 150 59 chr3 26538601 26538729 -191498429 + MLT2F LTR ERVL 544 659 -4 4265 169 42 34 chr3 26539684 26539890 -191497268 + L1MB4 LINE L1 5263 5466 -714 198 0 0 0 chr3 26539890 26539912 -191497246 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4265 169 42 34 chr3 26539912 26540590 -191496568 + L1MB4 LINE L1 5466 6154 -26 23 54 0 0 chr3 26541026 26541063 -191496095 + AT_rich Low_complexity Low_complexity 1 37 0 1171 197 13 69 chr3 26541951 26542255 -191494903 + L1M3e LINE L1 1 287 -6743 2130 260 48 68 chr3 26542261 26543163 -191493995 + L1M3e LINE L1 1133 2018 -5012 1892 176 0 16 chr3 26543163 26543469 -191493689 + AluJb SINE Alu 1 301 -11 2130 260 48 68 chr3 26543469 26543497 -191493661 + L1M3e LINE L1 2018 2045 -4985 242 305 78 31 chr3 26743913 26744041 -191293117 - L2 LINE L2 0 3272 3139 240 306 0 0 chr3 26744889 26744951 -191292207 + (TG)n Simple_repeat Simple_repeat 1 62 0 22 35 0 0 chr3 26747392 26747421 -191289737 + AT_rich Low_complexity Low_complexity 1 29 0 1150 197 178 24 chr3 26748290 26748661 -191288497 - MSTA LTR MaLR 0 428 1 703 268 61 7 chr3 26749330 26749610 -191287548 + L1M4 LINE L1 4871 5165 -981 636 205 0 0 chr3 26749611 26749723 -191287435 + FLAM_A SINE Alu 6 117 -25 326 156 10 15 chr3 26749855 26749937 -191287221 - Alu SINE Alu -2 300 242 2204 94 0 3 chr3 26750011 26750334 -191286824 + AluSg SINE Alu 1 322 0 2351 169 28 102 chr3 26750343 26750513 -191286645 + L1MD3 LINE L1 7421 7602 -393 1008 77 0 7 chr3 26750513 26750656 -191286502 + L1PA4 LINE L1 6012 6153 -2 2351 169 28 102 chr3 26750656 26750705 -191286453 + L1MD3 LINE L1 7602 7653 -342 189 0 0 0 chr3 26750705 26750726 -191286432 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2351 169 28 102 chr3 26750726 26751115 -191286043 + L1MD3 LINE L1 7653 7985 -10 236 193 277 12 chr3 26751336 26751419 -191285739 + L1MEd LINE L1 46 150 -5969 455 345 131 25 chr3 26751469 26751918 -191285240 + L1MEd LINE L1 244 740 -5379 296 299 78 42 chr3 26754254 26754421 -191282737 + MIR SINE MIR 39 211 -51 229 259 12 86 chr3 26754458 26754539 -191282619 + L2 LINE L2 3239 3313 0 21 57 0 0 chr3 26755401 26755436 -191281722 + AT_rich Low_complexity Low_complexity 1 35 0 993 96 0 0 chr3 26755852 26755977 -191281181 - AluSc SINE Alu -19 290 166 22 35 0 0 chr3 26756815 26756844 -191280314 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 26757491 26757514 -191279644 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr3 26760989 26761014 -191276144 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 202 68 68 68 chr3 26763546 26763590 -191273568 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr3 26763890 26763911 -191273247 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr3 26765842 26765876 -191271282 + AT_rich Low_complexity Low_complexity 1 34 0 204 259 0 35 chr3 26766341 26766399 -191270759 - L2 LINE L2 -2 3311 3256 28 29 0 0 chr3 26767769 26767804 -191269354 + AT_rich Low_complexity Low_complexity 1 35 0 1851 196 8 30 chr3 26775626 26775999 -191261159 + MLT1A1 LTR MaLR 1 365 0 2702 143 7 2 chr3 26778619 26779044 -191258114 - MSTC LTR MaLR 0 428 2 399 335 40 46 chr3 26779772 26779924 -191257234 + L2 LINE L2 3077 3227 -45 709 165 98 37 chr3 26780054 26780218 -191256940 - MER3 DNA MER1_type -81 128 2 521 244 16 8 chr3 26781527 26781650 -191255508 + MER5B DNA MER1_type 53 176 -2 631 194 21 7 chr3 26782677 26782821 -191254337 + L1MB4 LINE L1 6032 6177 -3 22 56 0 0 chr3 26783389 26783425 -191253733 + AT_rich Low_complexity Low_complexity 1 36 0 4539 76 26 9 chr3 26784495 26785603 -191251555 - MER11A LTR ERVK 0 1266 1 739 368 48 25 chr3 26785942 26786336 -191250822 - L2 LINE L2 -1 3271 2869 254 254 8 142 chr3 26786412 26786546 -191250612 - MER102a DNA MER1_type 0 330 215 1761 171 34 3 chr3 26786752 26787080 -191250078 - MER44D DNA MER2_type -1 608 1 496 305 0 8 chr3 26787606 26787734 -191249424 + MIR SINE MIR 30 156 -106 249 288 61 0 chr3 26788430 26788496 -191248662 + MIR SINE MIR 81 150 -58 253 326 11 11 chr3 26788505 26788594 -191248564 - MER5A DNA MER1_type -8 181 93 225 280 0 0 chr3 26788755 26788805 -191248353 - MLT1K LTR MaLR -111 477 428 618 341 39 33 chr3 26788900 26789205 -191247953 - MLT1K LTR MaLR -253 335 29 1821 126 169 21 chr3 26789445 26789818 -191247340 - MSTA LTR MaLR 0 428 1 703 268 61 7 chr3 26790487 26790767 -191246391 + L1M4 LINE L1 4871 5165 -981 636 205 0 0 chr3 26790768 26790880 -191246278 + FLAM_A SINE Alu 6 117 -25 813 100 0 0 chr3 26791109 26791219 -191245939 + AluSg/x SINE Alu 197 306 -4 272 244 13 13 chr3 26791407 26791485 -191245673 - MLT1K LTR MaLR -323 265 188 27 0 0 0 chr3 26791844 26791871 -191245287 + AT_rich Low_complexity Low_complexity 1 27 0 1965 132 94 29 chr3 26792267 26792609 -191244549 - THE1B LTR MaLR 0 364 1 21 82 0 0 chr3 26793906 26793955 -191243203 + AT_rich Low_complexity Low_complexity 1 49 0 349 347 56 20 chr3 26794463 26794659 -191242499 + HAL1b LINE L1 505 707 -641 24 53 0 0 chr3 26795546 26795584 -191241574 + AT_rich Low_complexity Low_complexity 1 38 0 29 47 0 0 chr3 26795636 26795679 -191241479 + AT_rich Low_complexity Low_complexity 1 43 0 337 278 141 56 chr3 26796137 26796407 -191240751 + L1ME LINE L1 4633 4925 -1221 360 249 112 13 chr3 26797071 26797372 -191239786 + L1MCc LINE L1 1281 1848 -5068 332 325 57 28 chr3 26797419 26797631 -191239527 + L1ME LINE L1 5508 5725 -396 791 252 59 14 chr3 26797633 26797855 -191239303 - MIR SINE MIR -28 234 3 533 213 126 44 chr3 26798136 26798319 -191238839 + MIR SINE MIR 3 200 -62 267 286 98 11 chr3 26799882 26800068 -191237090 + MIR SINE MIR 55 255 -7 191 382 114 30 chr3 26800215 26800477 -191236681 - L2 LINE L2 -20 3252 2969 1259 169 40 9 chr3 26800501 26800726 -191236432 - MER8 DNA MER2_type 0 239 8 184 340 0 0 chr3 26800793 26800846 -191236312 + MIR SINE MIR 89 141 -67 605 204 178 6 chr3 26801218 26801375 -191235783 + MER5A DNA MER1_type 3 186 -3 351 277 129 0 chr3 26802102 26802203 -191234955 + MER81 DNA DNA 1 114 0 650 211 177 0 chr3 26802285 26802432 -191234726 + MER5A DNA MER1_type 7 179 -10 2268 98 20 0 chr3 26802823 26803129 -191234029 + AluSp SINE Alu 2 313 0 917 168 37 42 chr3 26803408 26803598 -191233560 - MER5A DNA MER1_type 0 189 1 457 239 68 8 chr3 26803839 26803956 -191233202 - MER5C DNA MER1_type -200 124 1 1829 157 83 52 chr3 26804481 26804902 -191232256 - MER63B DNA MER1_type 0 436 3 969 264 84 6 chr3 26805178 26805602 -191231556 + L1MC3 LINE L1 6233 6359 0 385 245 180 7 chr3 26806053 26806192 -191230966 - MER5A DNA MER1_type 0 189 27 21 82 0 0 chr3 26807605 26807654 -191229504 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 26807884 26807913 -191229245 + AT_rich Low_complexity Low_complexity 1 29 0 241 290 83 21 chr3 26808667 26808812 -191228346 + L1ME LINE L1 5766 5919 -202 197 355 48 83 chr3 26809403 26809716 -191227442 - L2 LINE L2 -13 3259 2958 218 296 95 35 chr3 26809927 26810096 -191227062 + L2 LINE L2 2007 2185 -1129 3280 209 58 71 chr3 26810141 26810582 -191226576 + L1MC4a LINE L1 6730 7176 -632 2153 101 0 3 chr3 26810582 26810869 -191226289 + AluSg SINE Alu 1 286 -24 3280 209 58 71 chr3 26810869 26811084 -191226074 + L1MC4a LINE L1 7176 7392 -416 1008 77 0 7 chr3 26811084 26811227 -191225931 + L1PA4 LINE L1 6012 6153 -2 3280 209 58 71 chr3 26811227 26811276 -191225882 + L1MC4a LINE L1 7392 7440 -368 189 0 0 0 chr3 26811276 26811297 -191225861 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3280 209 58 71 chr3 26811297 26811683 -191225475 + L1MC4a LINE L1 7440 7808 0 241 193 277 12 chr3 26811907 26811990 -191225168 + L1MEd LINE L1 46 150 -5969 1062 306 123 22 chr3 26812040 26812884 -191224274 + L1MEd LINE L1 244 1172 -4947 347 300 0 0 chr3 26812960 26813050 -191224108 - L1MC4 LINE L1 -1339 6703 6614 312 219 73 0 chr3 26813055 26813137 -191224021 - L1MC4 LINE L1 -1340 6702 6615 * 316 259 47 0 chr3 26813109 26813194 -191223964 - L1MC4 LINE L1 -1340 6702 6614 370 223 0 43 chr3 26813214 26813308 -191223850 - L1MC4 LINE L1 -1339 6703 6614 1427 109 45 5 chr3 26813981 26814201 -191222957 - MER30 DNA MER1_type 0 230 2 1278 216 41 44 chr3 26814210 26814552 -191222606 + MER58B DNA MER1_type 1 341 0 24 0 0 0 chr3 26816002 26816026 -191221132 + AT_rich Low_complexity Low_complexity 1 24 0 603 306 19 19 chr3 26816323 26816588 -191220570 + L1ME4a LINE L1 5491 5755 -366 252 244 244 10 chr3 26816596 26816789 -191220369 + L1ME4a LINE L1 5803 6040 -81 363 44 0 0 chr3 26816915 26816960 -191220198 + (CA)n Simple_repeat Simple_repeat 2 46 0 256 270 40 30 chr3 26816978 26817078 -191220080 - L1MC4 LINE L1 -1927 5881 5781 363 298 263 29 chr3 26817183 26817639 -191219519 + L2 LINE L2 966 1528 -1786 352 307 12 102 chr3 26817639 26818049 -191219109 - L1M4 LINE L1 -2392 3754 3382 810 232 40 13 chr3 26818820 26818866 -191218292 - Charlie4 DNA MER1_type -1718 243 200 2320 147 0 3 chr3 26818866 26819233 -191217925 + MER47A DNA MER2_type 1 366 0 810 232 40 13 chr3 26819233 26819410 -191217748 - Charlie4 DNA MER1_type -1761 200 14 454 313 27 46 chr3 26819609 26819653 -191217505 - HAL1 LINE L1 -741 1766 1723 291 54 0 0 chr3 26819653 26819690 -191217468 + (TA)n Simple_repeat Simple_repeat 2 38 0 454 313 27 46 chr3 26819690 26820016 -191217142 - HAL1 LINE L1 -784 1723 1403 421 302 64 53 chr3 26820030 26820295 -191216863 - L1MEd LINE L1 -4864 1255 988 1115 191 0 43 chr3 26820819 26821049 -191216109 - AluJo SINE Alu -92 220 1 22 0 0 0 chr3 26821068 26821090 -191216068 + AT_rich Low_complexity Low_complexity 1 22 0 486 311 12 81 chr3 26822410 26822732 -191214426 - L2 LINE L2 -19 3294 2995 474 65 0 0 chr3 26823001 26823063 -191214095 + (TA)n Simple_repeat Simple_repeat 1 62 0 287 309 44 22 chr3 26824545 26824681 -191212477 - L2 LINE L2 -219 3053 2915 463 316 35 12 chr3 26825356 26825527 -191211631 + MER5A DNA MER1_type 15 189 0 1686 275 104 34 chr3 26826380 26826835 -191210323 - MLT2E LTR ERVL -4 624 120 2054 100 35 7 chr3 26826835 26827124 -191210034 - AluSx SINE Alu -15 297 1 1686 275 104 34 chr3 26827124 26827235 -191209923 - MLT2E LTR ERVL -508 120 18 905 258 84 70 chr3 26827624 26828107 -191209051 - MLT1H LTR MaLR -15 534 5 878 203 55 51 chr3 26828227 26828444 -191208714 + MER20 DNA MER1_type 2 219 0 338 246 127 52 chr3 26830665 26830799 -191206359 + MIR SINE MIR 119 262 0 219 88 0 0 chr3 26833597 26833631 -191203527 + (CA)n Simple_repeat Simple_repeat 1 34 0 438 229 95 78 chr3 26834999 26835346 -191201812 - L1M LINE L1 -751 5413 5042 2339 222 54 2 chr3 26835357 26835915 -191201243 + L1ME2 LINE L1 5395 5981 -183 1876 184 14 23 chr3 26835915 26836263 -191200895 + MLT1A1 LTR MaLR 3 347 -18 491 291 24 0 chr3 26836285 26836450 -191200708 + L1ME2 LINE L1 5994 6162 -2 338 308 174 5 chr3 26836496 26836691 -191200467 + MIR SINE MIR 3 230 -32 313 261 73 37 chr3 26836965 26837161 -191199997 + MER63 DNA MER1_type 5 1687 -1 347 258 108 97 chr3 26837794 26838011 -191199147 + L1ME4a LINE L1 5628 5841 -280 2057 115 0 0 chr3 26838011 26838297 -191198861 - AluY SINE Alu -25 286 1 347 258 108 97 chr3 26838297 26838533 -191198625 + L1ME4a LINE L1 5841 6086 -35 447 266 24 48 chr3 26838905 26839112 -191198046 - L1MC4 LINE L1 -1 8041 7840 2114 240 59 38 chr3 26839172 26839863 -191197295 - L1ME2 LINE L1 -12 6152 5447 248 263 0 0 chr3 26840360 26840417 -191196741 + L2 LINE L2 3255 3311 -2 784 227 129 5 chr3 26840420 26840614 -191196544 + MIR SINE MIR 13 230 -32 2856 264 94 30 chr3 26843325 26843505 -191193653 - L2 LINE L2 -2 3311 3144 1796 168 0 0 chr3 26843505 26843796 -191193362 + AluSx SINE Alu 12 302 -10 2856 264 94 30 chr3 26843796 26844789 -191192369 - L2 LINE L2 -169 3144 2032 2224 112 0 3 chr3 26844789 26845093 -191192065 + AluSg SINE Alu 1 303 -7 2856 264 94 30 chr3 26845093 26845291 -191191867 - L2 LINE L2 -1281 2032 1848 436 254 131 89 chr3 26847080 26847438 -191189720 - LTR16A1 LTR ERVL 0 457 85 287 318 154 37 chr3 26847534 26847748 -191189410 - MIR SINE MIR -10 252 14 561 280 54 64 chr3 26847814 26848128 -191189030 + L3b LINE CR1 1103 1413 -170 313 36 36 36 chr3 26848150 26848205 -191188953 + (GAAAA)n Simple_repeat Simple_repeat 3 57 0 345 207 0 0 chr3 26848718 26848800 -191188358 + (TA)n Simple_repeat Simple_repeat 1 82 0 581 313 45 40 chr3 26849324 26849513 -191187645 - MIR SINE MIR -9 253 61 1568 207 102 8 chr3 26849513 26849875 -191187283 + MSTD LTR MaLR 1 396 0 581 313 45 40 chr3 26849875 26849909 -191187249 - MIR SINE MIR -201 61 29 350 275 79 119 chr3 26850041 26850546 -191186612 + MLT1K LTR MaLR 104 588 0 33529 39 31 2 chr3 26851068 26855232 -191181926 + L1P LINE L1 1 4286 -1860 10167 85 8 21 chr3 26855232 26856631 -191180527 + HERVL-A1 LTR ERVL 4274 5654 0 2999 80 52 5 chr3 26856631 26857055 -191180103 + MLT2A1 LTR ERVL 1 444 0 7159 220 60 28 chr3 26857055 26858219 -191178939 - L1ME LINE L1 -445 5790 4665 1854 167 20 3 chr3 26858219 26858573 -191178585 + MER46B DNA MER2_type 2 236 0 7159 220 60 28 chr3 26858573 26859851 -191177307 - L1ME LINE L1 -1570 4665 3278 5011 251 67 11 chr3 26859869 26861424 -191175734 - L1ME LINE L1 -4718 1678 37 404 235 0 0 chr3 26863570 26863651 -191173507 - MIR3 SINE MIR -46 162 82 1143 256 83 42 chr3 26864383 26864855 -191172303 - LTR16C LTR ERVL 0 491 1 594 269 120 42 chr3 26864879 26865213 -191171945 - MLT1I LTR MaLR -11 398 39 524 342 74 25 chr3 26865608 26865869 -191171289 + L1MC4a LINE L1 5413 5660 -2148 2542 133 24 7 chr3 26865869 26866289 -191170869 + MSTA LTR MaLR 1 427 -1 524 342 74 25 chr3 26866289 26866515 -191170643 + L1MC4a LINE L1 5660 5924 -1884 299 239 114 94 chr3 26866727 26866928 -191170230 + MLT1K LTR MaLR 136 340 -248 255 61 0 0 chr3 26867029 26867062 -191170096 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 330 314 127 31 chr3 26867228 26867457 -191169701 + L1MC4a LINE L1 5751 6001 -1807 622 300 67 73 chr3 26867892 26868249 -191168909 - MLT1I LTR MaLR -1 408 54 21 0 0 0 chr3 26868652 26868673 -191168485 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 26868784 26868807 -191168351 + AT_rich Low_complexity Low_complexity 1 23 0 756 102 0 183 chr3 26869110 26869307 -191167851 - MER82 DNA MER2_type -304 349 189 26 30 0 0 chr3 26869365 26869398 -191167760 + AT_rich Low_complexity Low_complexity 1 33 0 307 227 13 60 chr3 26869459 26869609 -191167549 + L1ME4a LINE L1 5976 6118 -3 2178 97 4 0 chr3 26869988 26870337 -191166821 + AluSg SINE Alu 3 352 0 822 113 0 0 chr3 26870347 26870453 -191166705 + AluSg/x SINE Alu 187 292 -20 269 26 26 0 chr3 26870998 26871036 -191166122 + (CA)n Simple_repeat Simple_repeat 2 40 0 2942 161 40 72 chr3 26871040 26871692 -191165466 - MER82 DNA MER2_type 0 653 23 24 67 0 0 chr3 26871695 26871740 -191165418 + AT_rich Low_complexity Low_complexity 1 45 0 2488 79 0 0 chr3 26871951 26872254 -191164904 + AluY SINE Alu 1 303 -8 1852 149 3 0 chr3 26872330 26872612 -191164546 - AluSx SINE Alu -7 305 23 836 252 5 5 chr3 26873376 26873582 -191163576 + L1ME1 LINE L1 5457 5662 -504 1155 246 30 18 chr3 26875719 26876049 -191161109 + L1ME1 LINE L1 5674 6007 -159 234 65 0 0 chr3 26876067 26876098 -191161060 + MER3 DNA MER1_type 19 49 -160 375 245 13 0 chr3 26876103 26876213 -191160945 + L1ME1 LINE L1 6064 6183 -1 322 217 120 22 chr3 26876538 26876630 -191160528 + L2 LINE L2 3208 3308 -5 1023 276 110 18 chr3 26876904 26877472 -191159686 - L2 LINE L2 -4 3309 2687 345 140 0 0 chr3 26877472 26877522 -191159636 + Alu SINE Alu 1 50 -250 428 233 0 0 chr3 26877522 26877608 -191159550 - AluJ/FLAM SINE Alu -226 86 1 213 344 110 40 chr3 26877691 26877918 -191159240 - L2 LINE L2 -1063 2251 2009 * 870 313 69 30 chr3 26877897 26878396 -191158762 + L2 LINE L2 2791 3306 -7 21 0 0 0 chr3 26879606 26879627 -191157531 + AT_rich Low_complexity Low_complexity 1 21 0 240 306 0 0 chr3 26880369 26880431 -191156727 + (CA)n Simple_repeat Simple_repeat 1 62 0 250 320 70 23 chr3 26881280 26881408 -191155750 + L2 LINE L2 3139 3272 0 507 340 46 46 chr3 26881800 26882059 -191155099 - MLT1K LTR MaLR -325 263 5 488 311 37 37 chr3 26882399 26882563 -191154595 - MER5B DNA MER1_type -14 164 1 1422 208 5 5 chr3 26884067 26884549 -191152609 - L1ME LINE L1 -627 5537 5056 1844 191 41 109 chr3 26884562 26884700 -191152458 + L1ME2 LINE L1 5554 5700 -464 1171 130 19 24 chr3 26884700 26884907 -191152251 + L1PB1 LINE L1 5943 6148 -3 1844 191 41 109 chr3 26884907 26885401 -191151757 + L1ME2 LINE L1 5700 6143 -21 34 84 0 0 chr3 26885543 26885626 -191151532 + AT_rich Low_complexity Low_complexity 1 83 0 318 244 75 85 chr3 26885691 26885998 -191151160 - L1ME4a LINE L1 -206 5915 5612 243 0 0 0 chr3 26886497 26886524 -191150634 + (T)n Simple_repeat Simple_repeat 1 27 0 527 283 69 6 chr3 26886826 26886999 -191150159 + MIR SINE MIR 64 247 -15 724 352 157 33 chr3 26887081 26887531 -191149627 + L2 LINE L2 210 603 -2711 2184 112 0 0 chr3 26887531 26887817 -191149341 - AluSx SINE Alu -26 286 1 724 352 157 33 chr3 26887817 26888933 -191148225 + L2 LINE L2 603 1970 -1344 30 59 0 0 chr3 26889696 26889747 -191147411 + AT_rich Low_complexity Low_complexity 1 51 0 243 0 0 0 chr3 26891803 26891830 -191145328 + (TG)n Simple_repeat Simple_repeat 2 28 0 246 342 46 66 chr3 26892531 26892683 -191144475 - L3b LINE CR1 -38 1545 1397 237 289 79 44 chr3 26892705 26892819 -191144339 + MIR SINE MIR 71 188 -74 507 314 14 45 chr3 26894099 26894319 -191142839 - MIR SINE MIR -14 248 36 268 43 21 21 chr3 26894947 26894994 -191142164 + (CA)n Simple_repeat Simple_repeat 1 47 0 210 37 0 0 chr3 26896137 26896164 -191140994 + (GA)n Simple_repeat Simple_repeat 2 28 0 304 339 83 39 chr3 26896556 26896736 -191140422 + MER5A DNA MER1_type 2 189 0 251 284 140 26 chr3 26898983 26899212 -191137946 + L1ME LINE L1 5563 5817 -304 751 271 60 5 chr3 26899826 26900044 -191137114 + MIR SINE MIR 33 262 0 189 390 50 25 chr3 26901993 26902152 -191135006 + L3b LINE CR1 1420 1582 -1 943 189 9 47 chr3 26903461 26903673 -191133485 - MER3 DNA MER1_type -1 208 5 238 333 126 49 chr3 26904084 26904432 -191132726 + L2 LINE L2 2328 2702 -612 1260 228 96 3 chr3 26904720 26905032 -191132126 + MER58B DNA MER1_type 1 341 0 284 310 7 71 chr3 26905136 26905291 -191131867 + L2 LINE L2 3160 3304 -9 240 287 0 32 chr3 26905361 26905455 -191131703 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 246 128 0 0 chr3 26906557 26906596 -191130562 + (A)n Simple_repeat Simple_repeat 1 39 0 273 264 63 25 chr3 26906855 26907014 -191130144 - L1ME LINE L1 -614 5507 5343 596 312 74 28 chr3 26907026 26907241 -191129917 + MIR SINE MIR 23 247 -15 2423 15 0 0 chr3 26909765 26910037 -191127121 - L1P1 LINE L1 -505 5650 5379 405 49 98 0 chr3 26910037 26910091 -191127067 + L1PA4 LINE L1 6088 6154 -1 1102 281 71 20 chr3 26910352 26910801 -191126357 - MLT1L LTR MaLR -4 611 140 478 266 70 0 chr3 26911015 26911143 -191126015 + L2 LINE L2 3177 3313 0 1581 195 26 35 chr3 26911915 26912258 -191124900 + MLT1A1 LTR MaLR 26 365 0 1257 247 76 8 chr3 26912569 26912950 -191124208 + LTR16C LTR ERVL 85 491 0 420 82 0 0 chr3 26913121 26913182 -191123976 + (CA)n Simple_repeat Simple_repeat 2 62 0 1134 286 58 39 chr3 26915105 26915692 -191121466 + L1MCc LINE L1 816 1413 -5010 * 6585 220 118 69 chr3 26915689 26916132 -191121026 + L1MD3 LINE L1 4763 5183 -2812 3159 104 11 7 chr3 26916132 26916582 -191120576 + MLT2A2 LTR ERVL 1 452 -1 6585 220 118 69 chr3 26916582 26916824 -191120334 + L1MD3 LINE L1 5183 5412 -2583 204 40 0 0 chr3 26916824 26916849 -191120309 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6585 220 118 69 chr3 26916849 26918524 -191118634 + L1MD3 LINE L1 5412 7003 -992 512 259 12 8 chr3 26918524 26918652 -191118506 + MLT1F1 LTR MaLR 1 129 -445 6585 220 118 69 chr3 26918652 26919037 -191118121 + L1MD3 LINE L1 7003 7368 -627 2477 121 22 0 chr3 26919037 26919393 -191117765 - THE1B LTR MaLR 0 364 1 6585 220 118 69 chr3 26919393 26919594 -191117564 + L1MD3 LINE L1 7368 7995 0 538 310 73 39 chr3 26919781 26920013 -191117145 - MIR SINE MIR 0 262 23 248 335 138 5 chr3 26920013 26920216 -191116942 - MIR SINE MIR 0 262 29 491 305 60 92 chr3 26921218 26921467 -191115691 - L2 LINE L2 0 3272 3032 738 213 113 0 chr3 26922235 26922395 -191114763 + MER45A DNA AcHobo 1 178 0 1521 195 128 19 chr3 26922633 26923054 -191114104 - MLT1C LTR MaLR 0 467 1 363 367 14 7 chr3 26923332 26923471 -191113687 - MIR3 SINE MIR -23 185 46 495 272 16 86 chr3 26923625 26923868 -191113290 - MER102a DNA MER1_type -16 314 89 309 305 83 31 chr3 26925241 26925409 -191111749 + MIR SINE MIR 15 191 -61 233 162 0 0 chr3 26926418 26926455 -191110703 + L2 LINE L2 3255 3291 -22 47 19 0 0 chr3 26926982 26927036 -191110122 + AT_rich Low_complexity Low_complexity 1 54 0 196 269 19 0 chr3 26928193 26928245 -191108913 - L2 LINE L2 0 3313 3261 981 119 0 0 chr3 26930206 26930357 -191106801 + (TA)n Simple_repeat Simple_repeat 2 152 0 1839 132 25 14 chr3 26930357 26930638 -191106520 - AluJb SINE Alu -28 284 1 1218 299 31 43 chr3 26932339 26932921 -191104237 - L1MC3 LINE L1 -1263 6522 5948 1530 207 31 0 chr3 26933333 26933657 -191103501 + L1 LINE L1 4910 5243 -903 387 208 35 34 chr3 26933867 26934226 -191102932 + (TATAA)n Simple_repeat Simple_repeat 1 359 0 280 232 96 0 chr3 26934236 26934361 -191102797 + (TATAG)n Simple_repeat Simple_repeat 2 138 0 415 146 20 26 chr3 26934368 26934519 -191102639 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 1911 149 48 25 chr3 26934714 26935070 -191102088 - THE1B LTR MaLR 0 364 1 10952 106 25 0 chr3 26935070 26936612 -191100546 - THE1B-int LTR MaLR 0 1580 1 1893 128 110 27 chr3 26936612 26936948 -191100210 - THE1B LTR MaLR 0 364 1 1945 132 31 0 chr3 26939461 26939585 -191097573 + AluSx SINE Alu 1 120 -192 192 40 0 0 chr3 26939585 26939610 -191097548 + (TA)n Simple_repeat Simple_repeat 1 25 0 1945 132 31 0 chr3 26939610 26939773 -191097385 + AluSx SINE Alu 120 297 -15 193 286 0 0 chr3 26940167 26940216 -191096942 + L2 LINE L2 3265 3313 0 452 256 0 62 chr3 26941087 26941216 -191095942 + FLAM_A SINE Alu 3 123 -10 23 78 0 0 chr3 26941573 26941624 -191095534 + AT_rich Low_complexity Low_complexity 1 51 0 1011 184 190 53 chr3 26942132 26942453 -191094705 - MLT1A1 LTR MaLR 0 365 1 246 291 39 29 chr3 26943330 26943433 -191093725 - MIR SINE MIR -60 148 45 354 294 21 21 chr3 26943884 26944027 -191093131 + MARNA DNA Mariner 88 230 -356 589 197 24 31 chr3 26944073 26944200 -191092958 - LTR67 LTR ERVL 0 557 432 231 271 86 48 chr3 26944596 26944762 -191092396 + MLT1J1 LTR MaLR 34 249 -262 230 294 166 43 chr3 26944765 26944928 -191092230 + MLT1J2 LTR MaLR 254 436 -14 766 271 95 21 chr3 26946729 26947086 -191090072 - MLT1H LTR MaLR -153 402 43 2114 130 0 0 chr3 26947231 26947532 -191089626 - AluSx SINE Alu -11 301 1 308 304 0 0 chr3 26947604 26947683 -191089475 + L2 LINE L2 3192 3270 -2 543 245 155 0 chr3 26947932 26948087 -191089071 + MER5A DNA MER1_type 9 187 -2 25 51 0 0 chr3 26948728 26948767 -191088391 + AT_rich Low_complexity Low_complexity 1 39 0 693 186 137 0 chr3 26949295 26949456 -191087702 - MER5A DNA MER1_type 0 189 7 7308 168 18 10 chr3 26949496 26951947 -191085211 + L1PB1 LINE L1 3688 6151 0 428 344 87 5 chr3 26952057 26952252 -191084906 + MIR SINE MIR 52 262 0 278 300 0 29 chr3 26952394 26952464 -191084694 - L2 LINE L2 0 3272 3205 1653 237 47 81 chr3 26952494 26952890 -191084268 - MLT1F LTR MaLR -8 534 161 2300 93 3 3 chr3 26952890 26953190 -191083968 + AluSx SINE Alu 1 300 -12 1653 237 47 81 chr3 26953190 26953346 -191083812 - MLT1F LTR MaLR -381 161 1 508 217 83 0 chr3 26953834 26953954 -191083204 - MER94 DNA DNA 0 134 5 180 0 0 0 chr3 26954531 26954551 -191082607 + (A)n Simple_repeat Simple_repeat 1 20 0 1905 172 20 24 chr3 26955774 26956265 -191080893 - L1M4 LINE L1 -526 5658 5171 238 315 97 24 chr3 26956445 26956610 -191080548 - MIR SINE MIR -38 224 48 22 35 0 0 chr3 26956998 26957027 -191080131 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr3 26957040 26957083 -191080075 + AT_rich Low_complexity Low_complexity 1 43 0 184 390 0 0 chr3 26957861 26957956 -191079202 + MIR SINE MIR 37 131 -77 * 347 298 107 16 chr3 26957887 26958063 -191079095 + L2 LINE L2 3083 3308 -5 1406 179 75 48 chr3 26959254 26959589 -191077569 + MER2 DNA MER2_type 1 344 0 302 216 57 45 chr3 26959856 26959944 -191077214 - MLT1J1 LTR MaLR -13 433 345 1815 268 105 27 chr3 26960001 26960084 -191077074 + L1ME3A LINE L1 4961 5036 -1134 748 218 93 10 chr3 26960084 26960277 -191076881 + MER3 DNA MER1_type 1 209 0 1815 268 105 27 chr3 26960277 26960665 -191076493 + L1ME3A LINE L1 5036 5392 -778 198 0 0 0 chr3 26960665 26960687 -191076471 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1815 268 105 27 chr3 26960687 26961330 -191075828 + L1ME3A LINE L1 5392 6161 -9 252 212 15 61 chr3 26961573 26961639 -191075519 - L2 LINE L2 0 3313 3251 213 247 93 31 chr3 26962073 26962170 -191074988 + L2 LINE L2 3150 3252 -20 329 274 101 94 chr3 26963602 26963909 -191073249 - MLT1J LTR MaLR -101 410 102 239 312 0 13 chr3 26963965 26964042 -191073116 - MLT1L LTR MaLR -538 77 2 4288 185 32 15 chr3 26964589 26965603 -191071555 + L1MB3 LINE L1 5149 6181 -2 4830 90 1 10 chr3 27067884 27068586 -190968572 - L1P LINE L1 -893 5253 4558 3641 78 4 0 chr3 27068586 27069066 -190968092 + L1PA7 LINE L1 5655 6143 -11 446 271 49 0 chr3 27070453 27070597 -190966561 - MIR SINE MIR 0 262 112 184 42 0 0 chr3 27070757 27070781 -190966377 + MIR SINE MIR 116 139 -123 328 227 0 0 chr3 27071044 27071119 -190966039 + MER116 DNA Mariner 1 75 -5 441 0 0 0 chr3 27072713 27072762 -190964396 + (CA)n Simple_repeat Simple_repeat 2 50 0 1101 234 78 57 chr3 27073677 27074010 -190963148 - LTR16C LTR ERVL 0 491 152 919 343 52 41 chr3 27074315 27075029 -190962129 - HERV16 LTR ERVL -441 5323 4602 635 342 29 26 chr3 27075094 27075404 -190961754 - HERV16 LTR ERVL -1225 4429 4119 376 312 28 57 chr3 27075542 27075824 -190961334 - HERV16 LTR ERVL -1698 3956 3683 777 209 48 147 chr3 27075875 27076291 -190960867 + MLT2D LTR ERVL 90 464 0 957 324 40 53 chr3 27076336 27077042 -190960116 - HERV16 LTR ERVL -2850 2146 1492 1106 184 10 0 chr3 27077452 27077659 -190959499 - MER3 DNA MER1_type 0 209 1 266 349 30 48 chr3 27077748 27077914 -190959244 - MIR SINE MIR -72 190 28 1832 240 42 38 chr3 27078103 27078905 -190958253 + L1MEc LINE L1 1200 2148 -4415 421 305 41 50 chr3 27078898 27079334 -190957824 + L1M4 LINE L1 1731 2162 -4234 * 458 112 90 34 chr3 27079323 27079412 -190957746 + L1M4 LINE L1 2383 2476 -3739 * 1080 259 37 0 chr3 27079405 27079788 -190957370 + L1M4 LINE L1 2867 3263 -2952 * 13773 186 36 22 chr3 27079783 27084032 -190953126 + L1MA3 LINE L1 12 4201 -3523 1646 179 0 74 chr3 27084032 27084177 -190952981 + AluJo SINE Alu 1 155 -157 2228 62 14 3 chr3 27084177 27084466 -190952692 + AluY SINE Alu 1 292 -19 1646 179 0 74 chr3 27084466 27084656 -190952502 + AluJo SINE Alu 155 311 -1 13773 186 36 22 chr3 27084656 27086205 -190950953 + L1MA3 LINE L1 4201 5727 -1997 2726 7 0 0 chr3 27086205 27086498 -190950660 - AluYa5 SINE Alu -13 298 6 13773 186 36 22 chr3 27086498 27087947 -190949211 + L1MA3 LINE L1 5727 7724 0 24 0 0 0 chr3 27087954 27087978 -190949180 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr3 27088158 27088203 -190948955 + AT_rich Low_complexity Low_complexity 1 45 0 16365 94 18 3 chr3 27088410 27091047 -190946111 - L1P3 LINE L1 -534 5620 2946 2993 225 54 14 chr3 27091053 27091474 -190945684 + L1M4 LINE L1 4426 4829 -1386 252 59 0 0 chr3 27091474 27091508 -190945650 + (TG)n Simple_repeat Simple_repeat 1 34 0 2993 225 54 14 chr3 27091508 27091945 -190945213 + L1M4 LINE L1 4829 5318 -897 265 143 95 16 chr3 27091948 27092011 -190945147 + L1M4 LINE L1 5504 5571 -662 751 222 26 32 chr3 27092610 27092799 -190944359 - MER5A DNA MER1_type 0 189 2 2151 119 0 3 chr3 27093284 27093577 -190943581 - AluSc SINE Alu -17 292 1 235 0 0 0 chr3 27093826 27093853 -190943305 - MLT2A1 LTR ERVL 0 444 418 * 2058 85 42 16 chr3 27093851 27094158 -190943000 - MLT2A1 LTR ERVL -129 315 1 331 411 15 0 chr3 27094169 27094366 -190942792 - MER93a-int LTR ERV1 -1085 6452 6253 2550 234 66 52 chr3 27094845 27095873 -190941285 - MER93a-int LTR ERV1 -1480 3456 2866 1606 138 14 3 chr3 27095873 27096156 -190941002 + L1MA1 LINE L1 6017 6302 0 2550 234 66 52 chr3 27096156 27096560 -190940598 - MER93a-int LTR ERV1 -2070 2866 2469 2221 83 0 23 chr3 27096644 27096944 -190940214 + AluY SINE Alu 1 293 -18 446 229 54 75 chr3 27096960 27097315 -190939843 - MER93a-int LTR ERV1 -2549 2387 2106 1264 182 71 43 chr3 27097323 27097603 -190939555 + Tigger2a DNA MER2_type 5 292 -142 2357 50 4 0 chr3 27097709 27097989 -190939169 + AluY SINE Alu 1 320 0 352 0 0 0 chr3 27097989 27098028 -190939130 + (TAAA)n Simple_repeat Simple_repeat 3 160 0 685 214 21 28 chr3 27098030 27098175 -190938983 + Tigger2a DNA MER2_type 301 444 0 385 247 147 0 chr3 27098189 27098339 -190938819 - MER93a-int LTR ERV1 -2855 2081 1910 367 186 116 0 chr3 27098433 27098519 -190938639 - MER34 LTR ERV1 -446 96 1 1364 200 76 56 chr3 27098712 27099381 -190937777 - MER93a-int LTR ERV1 -2846 3017 882 278 288 61 0 chr3 27099704 27099770 -190937388 - MER93a-int LTR ERV1 -7238 299 230 788 257 133 22 chr3 27099965 27100327 -190936831 - MER93a LTR ERV1 0 402 1 248 172 0 35 chr3 27101401 27101459 -190935699 - MLT2C1 LTR ERVL 0 520 465 228 163 0 0 chr3 27101516 27101559 -190935599 + (TA)n Simple_repeat Simple_repeat 2 44 0 261 98 0 0 chr3 27101562 27101603 -190935555 + (GA)n Simple_repeat Simple_repeat 2 42 0 1466 167 22 51 chr3 27101626 27101937 -190935221 - MLT2C1 LTR ERVL -95 302 1 2194 252 68 19 chr3 27103771 27104036 -190933122 + MLT1E1 LTR MaLR 1 252 -402 2535 76 51 0 chr3 27104036 27104392 -190932766 + L1PA7 LINE L1 5770 6143 -11 2194 252 68 19 chr3 27104392 27104745 -190932413 + MLT1E1 LTR MaLR 252 649 -5 342 0 0 0 chr3 27105456 27105494 -190931664 + (TG)n Simple_repeat Simple_repeat 2 39 0 266 357 9 27 chr3 27106423 27106535 -190930623 + L2 LINE L2 3197 3306 -7 1319 241 72 38 chr3 27106714 27107287 -190929871 + L1M4 LINE L1 881 1472 -5070 25 51 0 0 chr3 27107538 27107577 -190929581 + AT_rich Low_complexity Low_complexity 1 39 0 1006 308 23 34 chr3 27109530 27109916 -190927242 - LTR16A LTR ERVL -13 437 56 398 360 31 22 chr3 27110579 27110804 -190926354 - LTR16C LTR ERVL -102 389 163 696 293 15 10 chr3 27112023 27112228 -190924930 - MIR SINE MIR -55 207 2 191 229 48 96 chr3 27114061 27114144 -190923014 - L2 LINE L2 -5 3267 3189 479 133 4 0 chr3 27114398 27114479 -190922679 + MSTB1 LTR MaLR 257 409 -23 329 250 53 0 chr3 27115225 27115301 -190921857 + AluSg SINE Alu 3 82 -218 1194 173 119 34 chr3 27115425 27115720 -190921438 + THE1C LTR MaLR 56 375 0 6522 144 14 46 chr3 27115722 27116886 -190920272 + THE1C-int LTR MaLR 3 1128 -452 1098 287 117 29 chr3 27116985 27117431 -190919727 - MLT1G1 LTR MaLR -110 485 1 22 70 0 0 chr3 27117725 27117768 -190919390 + AT_rich Low_complexity Low_complexity 1 43 0 3104 193 39 29 chr3 27117971 27119356 -190917802 + L1MC1 LINE L1 4432 5830 -514 1331 161 22 0 chr3 27119356 27119580 -190917578 + MSTB LTR MaLR 1 229 -197 1679 189 151 17 chr3 27119602 27119974 -190917184 + MSTB LTR MaLR 5 426 0 1095 158 25 49 chr3 27119974 27120175 -190916983 + MSTB LTR MaLR 231 426 0 8677 191 17 21 chr3 27120175 27121816 -190915342 + MSTB-int LTR MaLR 1 1634 -17 2341 172 16 37 chr3 27121835 27122270 -190914888 + MSTB LTR MaLR 1 426 0 2644 165 18 12 chr3 27122270 27122773 -190914385 + L1MC1 LINE L1 5826 6331 -2 237 83 0 0 chr3 27122776 27122812 -190914346 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr3 27123526 27123555 -190913603 + AT_rich Low_complexity Low_complexity 1 29 0 180 233 116 70 chr3 27124352 27124438 -190912720 - MIR SINE MIR -112 150 61 1008 182 11 16 chr3 27124471 27124658 -190912500 - MER5A DNA MER1_type -3 186 1 379 149 14 27 chr3 27125314 27125388 -190911770 - L1PA10 LINE L1 -3 6165 6093 514 307 36 12 chr3 27125402 27125568 -190911590 - MIR SINE MIR -82 180 11 287 48 0 24 chr3 27125798 27125840 -190911318 + (CAA)n Simple_repeat Simple_repeat 2 42 0 262 333 62 56 chr3 27126402 27126564 -190910594 - MIR SINE MIR -54 208 46 9392 181 79 65 chr3 27126921 27128403 -190908755 + L1MCa LINE L1 6 1466 -4960 189 0 0 0 chr3 27128403 27128424 -190908734 + (TG)n Simple_repeat Simple_repeat 2 22 0 4275 137 14 3 chr3 27128425 27129131 -190908027 - L1MA3 LINE L1 -15 6290 5577 9392 181 79 65 chr3 27129131 27129548 -190907610 + L1MCa LINE L1 1466 1876 -4550 1756 211 79 107 chr3 27129548 27130396 -190906762 + LTR1B LTR ERV1 1 824 -2 9392 181 79 65 chr3 27130396 27130996 -190906162 + L1MCa LINE L1 1876 2557 -3869 1861 179 0 3 chr3 27130996 27131303 -190905855 + AluSx SINE Alu 1 306 -6 9392 181 79 65 chr3 27131303 27131786 -190905372 + L1MCa LINE L1 2557 3032 -3394 297 159 15 0 chr3 27131788 27131855 -190905303 + L1MC1 LINE L1 2507 2566 -3860 2523 251 38 6 chr3 27133442 27134283 -190902875 + L1MC1 LINE L1 3118 3985 -2441 873 269 52 3 chr3 27134273 27134597 -190902561 + L1MC1 LINE L1 4613 4952 -1474 * 3713 170 55 3 chr3 27134709 27135419 -190901739 + L1MC1 LINE L1 5867 6613 0 1526 203 39 25 chr3 27135420 27135779 -190901379 + L1MB8 LINE L1 5808 6171 -7 243 109 16 47 chr3 27136667 27136731 -190900427 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 436 272 79 45 chr3 27137058 27137372 -190899786 - MLT1H LTR MaLR -110 299 2 202 258 91 0 chr3 27137400 27137466 -190899692 + MIR SINE MIR 123 194 -68 240 236 14 0 chr3 27137646 27137718 -190899440 + L1ME3A LINE L1 6093 6165 -5 792 297 80 21 chr3 27138423 27138901 -190898257 + L1ME3A LINE L1 3498 4003 -2143 7812 16 1 0 chr3 27139076 27139975 -190897183 - L1PA3 LINE L1 -2 6153 5254 1600 170 3 14 chr3 27140155 27140437 -190896721 - L1PA16 LINE L1 -105 6061 5783 824 275 64 42 chr3 27140467 27141088 -190896070 + L1ME3A LINE L1 5148 5795 -375 2200 125 31 22 chr3 27141088 27141447 -190895711 + THE1B LTR MaLR 3 364 0 824 275 64 42 chr3 27141447 27141609 -190895549 + L1ME3A LINE L1 5795 5952 -218 32 26 0 0 chr3 27141783 27141822 -190895336 + AT_rich Low_complexity Low_complexity 1 39 0 1138 150 33 0 chr3 27142157 27142337 -190894821 + THE1B LTR MaLR 1 186 -178 6927 99 6 13 chr3 27142363 27144181 -190892977 - L1PA7 LINE L1 -2 6152 4345 32978 32 20 1 chr3 27144181 27150157 -190887001 - L1PA2 LINE L1 -7 6463 316 2295 98 9 0 chr3 27150155 27150491 -190886667 - L1PA7 LINE L1 -1785 4361 4023 * 1177 130 5 10 chr3 27150489 27150681 -190886477 - L1PA2 LINE L1 -6265 196 6 * 867 161 68 6 chr3 27150697 27150858 -190886300 + THE1B LTR MaLR 194 364 0 333 239 43 0 chr3 27150979 27151071 -190886087 - MIR SINE MIR -46 216 121 1670 284 74 15 chr3 27151422 27152624 -190884534 + L1ME3A LINE L1 4885 6162 -8 403 206 31 21 chr3 27152747 27152844 -190884314 + MER69 DNA AcHobo 4 101 -2425 4601 202 70 112 chr3 27153015 27154847 -190882311 - MER52A LTR ERV1 0 1755 1 2035 106 0 56 chr3 27154997 27155300 -190881858 + AluSx SINE Alu 1 286 -26 447 241 124 44 chr3 27156341 27156478 -190880680 + MER5A DNA MER1_type 2 149 -40 410 255 158 23 chr3 27157878 27158137 -190879021 - L1ME4a LINE L1 -9 6112 5819 1465 180 25 3 chr3 27158257 27158574 -190878584 - MER33 DNA MER1_type 0 324 1 527 225 24 6 chr3 27159055 27159224 -190877934 + Charlie2 DNA MER1_type 2509 2680 -182 40 21 0 0 chr3 27159260 27159307 -190877851 + AT_rich Low_complexity Low_complexity 1 47 0 321 235 157 0 chr3 27159412 27159514 -190877644 + MIR SINE MIR 89 206 -56 2246 115 7 0 chr3 27159588 27159892 -190877266 - AluSx SINE Alu -6 306 1 564 309 9 33 chr3 27159898 27160108 -190877050 - L2 LINE L2 -4 3309 3105 718 334 38 51 chr3 27160209 27160638 -190876520 + L2 LINE L2 2792 3218 -95 198 206 59 15 chr3 27160715 27160783 -190876375 - MIR SINE MIR -45 217 147 675 301 85 45 chr3 27160786 27161234 -190875924 - MLT1H LTR MaLR -5 544 79 218 313 0 5 chr3 27161273 27161344 -190875814 - MIR3 SINE MIR -36 172 102 27 29 0 0 chr3 27162411 27162445 -190874713 + AT_rich Low_complexity Low_complexity 1 34 0 191 287 56 46 chr3 27163467 27163575 -190873583 + L2 LINE L2 2869 2977 -295 601 289 34 21 chr3 27163629 27164018 -190873140 + L1MEc LINE L1 1445 1752 -4463 301 255 118 88 chr3 27164083 27164491 -190872667 + L1MCc LINE L1 36 455 -5968 9894 171 21 31 chr3 27164494 27167743 -190869415 + L1P3 LINE L1 12 3275 -3186 2363 216 43 16 chr3 27168094 27168807 -190868351 - L1MB7 LINE L1 -242 5942 5213 659 243 5 33 chr3 27169638 27169848 -190867310 + MER3 DNA MER1_type 1 204 -5 2229 210 68 38 chr3 27169999 27170633 -190866525 - L1MB8 LINE L1 -38 6140 5488 6475 82 14 1 chr3 27170958 27172721 -190864437 + L1PA8 LINE L1 4399 6172 0 314 335 7 26 chr3 27172990 27173145 -190864013 + L1MCc LINE L1 819 970 -5453 1873 280 64 10 chr3 27173149 27173949 -190863209 + L1ME3A LINE L1 5317 6159 -11 29 28 0 0 chr3 27173950 27173986 -190863172 + AT_rich Low_complexity Low_complexity 1 36 0 1574 85 0 9 chr3 27174573 27174797 -190862361 + L1PA13 LINE L1 5941 6162 -1 198 214 0 0 chr3 27174909 27174951 -190862207 - MIR SINE MIR -109 153 112 828 259 173 30 chr3 27175013 27175265 -190861893 - LTR16C LTR ERVL -3 488 165 1810 121 96 39 chr3 27175265 27175620 -190861538 - THE1C LTR MaLR 0 375 1 828 259 173 30 chr3 27175620 27175737 -190861421 - LTR16C LTR ERVL -326 165 66 381 319 61 44 chr3 27175891 27176251 -190860907 + MLT1K LTR MaLR 211 576 -12 591 261 36 52 chr3 27176259 27176589 -190860569 - HsTC2 DNA Tc2 -11 1887 1563 1011 231 94 44 chr3 27176625 27177677 -190859481 - L1MB5 LINE L1 -201 5973 4868 1976 190 33 32 chr3 27177678 27178228 -190858930 - MLT2A2 LTR ERVL 0 554 1 2394 153 26 16 chr3 27178232 27178824 -190858334 + MER4E LTR ERV1 1 766 0 326 297 34 34 chr3 27178827 27178945 -190858213 - L1MB5 LINE L1 -1285 4861 4744 1750 207 127 50 chr3 27179420 27180081 -190857077 + MER50 LTR ERV1 1 712 -22 2559 11 0 0 chr3 27180099 27180378 -190856780 - AluY SINE Alu -2 309 31 26 98 0 0 chr3 27180415 27180497 -190856661 + AT_rich Low_complexity Low_complexity 1 82 0 194 308 0 19 chr3 27180709 27180761 -190856397 - MIR SINE MIR -138 70 20 22 56 0 0 chr3 27180876 27180912 -190856246 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr3 27181042 27181070 -190856088 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 27181461 27181482 -190855676 + AT_rich Low_complexity Low_complexity 1 21 0 204 171 24 0 chr3 27181575 27181616 -190855542 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 224 336 103 9 chr3 27183176 27183292 -190853866 + MIR3 SINE MIR 81 207 -1 2437 73 0 0 chr3 27183689 27183989 -190853169 - AluY SINE Alu -11 300 1 296 109 0 16 chr3 27184761 27184825 -190852333 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 185 378 12 24 chr3 27185140 27185222 -190851936 - MIR SINE MIR -85 123 43 2253 121 0 0 chr3 27185338 27185643 -190851515 - AluSg SINE Alu -5 305 1 2307 77 7 0 chr3 27185788 27186075 -190851083 - AluY SINE Alu -14 297 9 1616 194 21 7 chr3 27186442 27186726 -190850432 + AluJb SINE Alu 2 289 -23 180 0 0 0 chr3 27186732 27186752 -190850406 + (TA)n Simple_repeat Simple_repeat 1 20 0 373 200 53 0 chr3 27187387 27187462 -190849696 - L2 LINE L2 -9 3304 3226 272 321 0 0 chr3 27187464 27187548 -190849610 - MIR SINE MIR -39 223 140 191 323 15 0 chr3 27187878 27187943 -190849215 - L2 LINE L2 -584 2730 2665 1220 207 37 52 chr3 27187947 27188218 -190848940 + AluJo SINE Alu 1 267 -45 244 321 46 0 chr3 27189476 27189607 -190847551 - MIR SINE MIR 0 262 126 248 259 0 0 chr3 27189788 27189846 -190847312 + MLT1J1 LTR MaLR 266 323 -123 234 285 141 62 chr3 27190558 27190814 -190846344 + MLT1J LTR MaLR 236 511 0 414 350 65 31 chr3 27191247 27191541 -190845617 - L2 LINE L2 -571 2743 2440 397 268 142 16 chr3 27191772 27191962 -190845196 - LTR16B LTR ERVL -65 399 186 307 296 20 0 chr3 27192159 27192257 -190844901 + MLT1I LTR MaLR 41 140 -269 424 240 130 7 chr3 27192327 27192473 -190844685 + MLT1I LTR MaLR 245 408 -1 226 265 0 29 chr3 27192938 27193006 -190844152 - MIR SINE MIR -98 164 99 535 273 83 30 chr3 27193583 27194027 -190843131 + MLT1G1 LTR MaLR 7 571 -24 1562 74 0 5 chr3 27194171 27194386 -190842772 - L1PA6 LINE L1 0 6154 5941 222 182 0 0 chr3 27194986 27195019 -190842139 + L2 LINE L2 3213 3245 -27 199 47 0 93 chr3 27199636 27199679 -190837479 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 31 44 0 0 chr3 27200366 27200411 -190836747 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr3 27200500 27200526 -190836632 + AT_rich Low_complexity Low_complexity 1 26 0 194 91 30 0 chr3 27200722 27200755 -190836403 + (CA)n Simple_repeat Simple_repeat 2 35 0 2333 107 0 0 chr3 27201304 27201613 -190835545 + AluSx SINE Alu 2 310 -2 2252 93 3 7 chr3 27202271 27202581 -190834577 - AluSg1 SINE Alu 0 309 1 333 321 111 59 chr3 27203755 27204312 -190832846 + L2 LINE L2 2317 2902 -412 24 0 0 0 chr3 27205613 27205637 -190831521 + AT_rich Low_complexity Low_complexity 1 24 0 288 303 45 6 chr3 27206382 27206560 -190830598 - L1MC/D LINE L1 -2333 5475 5291 236 26 26 0 chr3 27206764 27206802 -190830356 - L1MA3 LINE L1 0 6305 6267 651 302 132 60 chr3 27207015 27208101 -190829057 - L1MC/D LINE L1 -1306 4840 3677 251 282 34 27 chr3 27209261 27209276 -190827882 - L1MA10 LINE L1 0 6334 6320 748 224 127 17 chr3 27209276 27209513 -190827645 - L1ME1 LINE L1 -2 6164 5902 4059 181 15 15 chr3 27209518 27210242 -190826916 + MER44D DNA MER2_type 10 605 0 284 248 10 10 chr3 27210242 27210343 -190826815 - L1ME1 LINE L1 -263 5903 5803 1004 211 98 90 chr3 27211031 27211160 -190825998 - MER114 LTR ERV 0 648 521 1710 137 59 42 chr3 27211160 27211466 -190825692 + AluSx SINE Alu 1 311 -1 1004 211 98 90 chr3 27211466 27211979 -190825179 - MER114 LTR ERV -127 521 1 21 0 0 0 chr3 27212147 27212168 -190824990 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr3 27212203 27212256 -190824902 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr3 27212491 27212519 -190824639 + AT_rich Low_complexity Low_complexity 1 28 0 2584 118 47 31 chr3 27212579 27213004 -190824154 + Tigger2a DNA MER2_type 1 432 -2 493 347 47 5 chr3 27213298 27213491 -190823667 - MIR SINE MIR -4 258 58 601 214 78 5 chr3 27213911 27214111 -190823047 + L1MA10 LINE L1 5964 6331 -3 265 73 455 0 chr3 27214160 27214215 -190822943 + MADE1 DNA Mariner 1 80 0 232 349 48 24 chr3 27215368 27215494 -190821664 + L2 LINE L2 3185 3313 0 222 208 56 83 chr3 27216006 27216078 -190821080 - MIR SINE MIR -71 191 122 1229 187 89 20 chr3 27216603 27216796 -190820362 - L1MD2 LINE L1 -2 6357 6179 198 91 0 0 chr3 27216796 27216829 -190820329 + (TG)n Simple_repeat Simple_repeat 2 34 0 1229 187 89 20 chr3 27216829 27216943 -190820215 - L1MD2 LINE L1 -180 6179 6074 2021 117 13 0 chr3 27216943 27217115 -190820043 - AluSq SINE Alu -11 302 123 189 0 0 0 chr3 27217115 27217136 -190820022 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2021 117 13 0 chr3 27217136 27217261 -190819897 - AluSq SINE Alu -190 123 1 1229 187 89 20 chr3 27217261 27217434 -190819724 - L1MD2 LINE L1 -285 6074 5795 2324 60 40 0 chr3 27218182 27218480 -190818678 - AluY SINE Alu -1 310 1 226 283 0 0 chr3 27219220 27219273 -190817885 + (CA)n Simple_repeat Simple_repeat 2 54 0 323 315 0 0 chr3 27219519 27219608 -190817550 - L1MC4 LINE L1 -1340 6702 6614 314 296 23 0 chr3 27219618 27219706 -190817452 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr3 27219724 27219747 -190817411 + (TA)n Simple_repeat Simple_repeat 2 24 0 2090 66 42 11 chr3 27219747 27220034 -190817124 - AluY SINE Alu -15 296 1 253 280 105 35 chr3 27221192 27221335 -190815823 + L2 LINE L2 3129 3281 -32 598 296 75 26 chr3 27221507 27221733 -190815425 - MIR SINE MIR -12 250 14 425 314 8 8 chr3 27221984 27222102 -190815056 + MER5B DNA MER1_type 3 120 -58 312 170 19 0 chr3 27222310 27222363 -190814795 - L2 LINE L2 -9 3263 3210 23 33 0 0 chr3 27222410 27222440 -190814718 + AT_rich Low_complexity Low_complexity 1 30 0 200 184 0 0 chr3 27222553 27222591 -190814567 + (CA)n Simple_repeat Simple_repeat 1 38 0 2399 28 42 0 chr3 27224155 27224443 -190812715 - AluY SINE Alu -11 300 1 3200 216 19 6 chr3 27225694 27226329 -190810829 + MER82 DNA MER2_type 1 643 -10 23 54 0 0 chr3 27226481 27226518 -190810640 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr3 27227109 27227148 -190810010 + AT_rich Low_complexity Low_complexity 1 39 0 258 56 0 0 chr3 27229612 27229648 -190807510 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 236 140 0 20 chr3 27230186 27230236 -190806922 + LTR33A LTR ERVL 4 52 -471 655 274 136 37 chr3 27230249 27230625 -190806533 + L1M4 LINE L1 3074 3486 -2660 512 194 0 10 chr3 27231051 27231161 -190805997 + MLT1H LTR MaLR 18 137 -272 2347 73 0 10 chr3 27231181 27231495 -190805663 + AluY SINE Alu 1 311 0 870 205 139 93 chr3 27231511 27232008 -190805150 - MER114 LTR ERV -128 520 1 21 0 0 0 chr3 27232176 27232197 -190804961 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr3 27232232 27232285 -190804873 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr3 27232520 27232548 -190804610 + AT_rich Low_complexity Low_complexity 1 28 0 2584 118 47 31 chr3 27232608 27233033 -190804125 + Tigger2a DNA MER2_type 1 432 -2 470 352 47 5 chr3 27233327 27233520 -190803638 - MIR SINE MIR -4 258 58 1374 166 7 88 chr3 27235718 27236025 -190801133 + AluJo SINE Alu 31 312 0 405 0 0 0 chr3 27236562 27236607 -190800551 + (TG)n Simple_repeat Simple_repeat 1 45 0 201 74 0 0 chr3 27236607 27236634 -190800524 + (GA)n Simple_repeat Simple_repeat 2 28 0 397 122 27 0 chr3 27236923 27236997 -190800161 + A-rich Low_complexity Low_complexity 4 79 0 276 143 83 12 chr3 27237173 27237257 -190799901 + (TTTAA)n Simple_repeat Simple_repeat 1 90 0 213 319 0 0 chr3 27237274 27237343 -190799815 - L2 LINE L2 0 3313 3245 654 146 0 0 chr3 27239783 27239893 -190797265 + (GA)n Simple_repeat Simple_repeat 1 110 0 6079 130 33 21 chr3 27240366 27241406 -190795752 - L1MA5A LINE L1 -10 7003 5951 11212 210 7 13 chr3 27241571 27244122 -190793036 - L1MA5A LINE L1 -1409 5453 2920 273 198 47 9 chr3 27244895 27245001 -190792157 + (TA)n Simple_repeat Simple_repeat 2 111 0 31 92 0 0 chr3 27245414 27245501 -190791657 + AT_rich Low_complexity Low_complexity 1 87 0 2272 112 0 0 chr3 27246298 27246610 -190790548 + AluSx SINE Alu 1 312 0 327 161 0 0 chr3 27247503 27247559 -190789599 - MER94 DNA DNA -1 133 78 22 0 0 0 chr3 27247613 27247635 -190789523 + AT_rich Low_complexity Low_complexity 1 22 0 754 237 110 5 chr3 27248353 27248900 -190788258 - MER114 LTR ERV 0 648 2 23 86 0 0 chr3 27249371 27249429 -190787729 + AT_rich Low_complexity Low_complexity 1 58 0 258 56 0 0 chr3 27250700 27250736 -190786422 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 237 140 0 20 chr3 27251273 27251323 -190785835 + LTR33A LTR ERVL 4 52 -471 649 274 136 37 chr3 27251336 27251712 -190785446 + L1ME3A LINE L1 3074 3486 -2660 557 257 17 100 chr3 27252138 27252268 -190784890 + MLT1H LTR MaLR 18 157 -392 2254 60 0 11 chr3 27252268 27252552 -190784606 + AluY SINE Alu 1 281 -30 557 257 17 100 chr3 27252552 27252712 -190784446 + MLT1H LTR MaLR 157 327 -222 253 167 42 42 chr3 27252896 27252968 -190784190 + MLT1H LTR MaLR 478 549 0 589 311 74 9 chr3 27252984 27253334 -190783824 + L1ME3A LINE L1 3907 4279 -1867 679 275 137 40 chr3 27253793 27254308 -190782850 + L1ME3A LINE L1 5328 5884 -286 295 214 143 56 chr3 27254607 27254733 -190782425 + MER103 DNA DNA 26 162 -4 204 40 0 0 chr3 27255130 27255155 -190782003 + (A)n Simple_repeat Simple_repeat 1 25 0 764 197 34 30 chr3 27255437 27255671 -190781487 - LTR37A LTR ERV1 -1 425 191 929 193 45 6 chr3 27255719 27255895 -190781263 - MER58B DNA MER1_type 0 341 159 1607 128 88 81 chr3 27256376 27256727 -190780431 + MLT1B LTR MaLR 1 357 -33 1709 177 52 3 chr3 27256727 27257055 -190780103 + MER2 DNA MER2_type 1 344 0 1607 128 88 81 chr3 27257055 27257087 -190780071 + MLT1B LTR MaLR 357 387 -3 455 311 194 47 chr3 27257090 27257585 -190779573 - L2 LINE L2 -896 2418 1851 297 0 0 0 chr3 27257749 27257782 -190779376 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2202 95 0 0 chr3 27257786 27258060 -190779098 - AluSc SINE Alu -35 274 1 276 30 0 0 chr3 27258355 27258388 -190778770 + (T)n Simple_repeat Simple_repeat 1 33 0 15536 40 5 11 chr3 27258410 27261144 -190776014 - L1PA4 LINE L1 -3 6152 3429 5067 172 27 20 chr3 27261750 27263384 -190773774 - L1P4 LINE L1 -384 5782 4139 28 0 0 0 chr3 27263630 27263658 -190773500 + AT_rich Low_complexity Low_complexity 1 28 0 2511 57 7 0 chr3 27263710 27264009 -190773149 - AluSc SINE Alu -8 301 1 214 232 402 0 chr3 27264183 27264295 -190772863 - MER5A DNA MER1_type -7 182 26 1106 181 86 102 chr3 27266132 27266435 -190770723 + AluJb SINE Alu 2 299 -3 314 242 81 48 chr3 27266605 27266729 -190770429 + L1M4 LINE L1 2249 2376 -3770 190 279 82 0 chr3 27268182 27268243 -190768915 + L2 LINE L2 3207 3272 0 2254 104 7 0 chr3 27268561 27268859 -190768299 - AluSq SINE Alu -13 300 1 386 257 20 0 chr3 27268884 27268985 -190768173 - MIR SINE MIR -14 248 146 898 315 99 3 chr3 27269078 27269430 -190767728 + LTR16C LTR ERVL 92 477 -14 256 322 0 22 chr3 27269431 27269521 -190767637 - MIR SINE MIR -127 135 48 567 248 47 51 chr3 27270897 27271111 -190766047 + MLT1J LTR MaLR 38 250 -261 1739 193 42 26 chr3 27271113 27271496 -190765662 + MLT1B LTR MaLR 1 389 -1 1524 118 0 5 chr3 27271517 27271737 -190765421 - L1P LINE L1 -1874 4272 4054 749 52 21 0 chr3 27271737 27271833 -190765325 + L1PA10 LINE L1 6067 6164 -4 546 183 29 0 chr3 27272211 27272315 -190764843 - MER20 DNA MER1_type 0 219 113 693 246 90 20 chr3 27272604 27272905 -190764253 - MER113 DNA MER1_type? -199 322 1 259 367 147 9 chr3 27273083 27273301 -190763857 - MIR SINE MIR 0 262 15 416 350 38 12 chr3 27273832 27273992 -190763166 - MIR3 SINE MIR -9 199 36 286 354 69 0 chr3 27274022 27274152 -190763006 - L3 LINE CR1 -31 1546 1408 1043 250 36 47 chr3 27274220 27274580 -190762578 + L2 LINE L2 2121 2476 -838 544 261 32 6 chr3 27274600 27274757 -190762401 + LTR41 LTR ERVL 6 166 -607 263 196 33 76 chr3 27275189 27275281 -190761877 + LTR41 LTR ERVL 679 766 -7 1121 261 52 50 chr3 27275292 27275694 -190761464 + LTR16A1 LTR ERVL 55 457 0 214 358 0 12 chr3 27275698 27275779 -190761379 - MIR SINE MIR -168 94 15 808 273 45 21 chr3 27277707 27277993 -190759165 + L1ME3A LINE L1 5798 6090 -80 25 65 0 0 chr3 27278167 27278213 -190758945 + AT_rich Low_complexity Low_complexity 1 46 0 335 307 10 10 chr3 27278843 27278944 -190758214 + MIR SINE MIR 42 142 -66 779 158 6 22 chr3 27279745 27279928 -190757230 + CT-rich Low_complexity Low_complexity 1 180 0 293 155 31 113 chr3 27280722 27280767 -190756391 - L1MB4 LINE L1 -1 6179 6145 1382 217 50 4 chr3 27280767 27281048 -190756110 - AluJo SINE Alu -18 294 1 293 155 31 113 chr3 27281048 27281099 -190756059 - L1MB4 LINE L1 -35 6145 6091 2615 146 35 9 chr3 27281107 27281565 -190755593 - L1MA4 LINE L1 -280 6020 5551 348 127 0 0 chr3 27282104 27282159 -190754999 + (CA)n Simple_repeat Simple_repeat 2 56 0 22 56 0 0 chr3 27283311 27283347 -190753811 + AT_rich Low_complexity Low_complexity 1 36 0 210 222 0 0 chr3 27283413 27283449 -190753709 + G-rich Low_complexity Low_complexity 2 37 0 602 267 4 25 chr3 27283449 27283918 -190753240 + C-rich Low_complexity Low_complexity 1 459 0 414 69 0 0 chr3 27284118 27284176 -190752982 + (GGGGA)n Simple_repeat Simple_repeat 1 58 0 288 321 92 25 chr3 27284653 27284849 -190752309 - MIR SINE MIR -14 248 40 637 219 11 115 chr3 27285981 27286260 -190750898 - L2 LINE L2 0 3313 3064 552 272 63 16 chr3 27286352 27286633 -190750525 - LTR16B LTR ERVL -101 363 16 720 294 56 0 chr3 27287768 27287982 -190749176 - MIR SINE MIR -33 229 4 253 294 128 10 chr3 27288636 27288738 -190748420 + L2 LINE L2 2031 2144 -1170 1071 303 67 38 chr3 27288738 27288854 -190748304 + L2 LINE L2 2710 2821 -492 1946 167 107 21 chr3 27288854 27289284 -190747874 - MLT1C LTR MaLR 0 467 1 1071 303 67 38 chr3 27289284 27289736 -190747422 + L2 LINE L2 2821 3300 -13 242 361 70 51 chr3 27290333 27290491 -190746667 + L2 LINE L2 3103 3263 -9 1393 289 96 21 chr3 27291124 27291644 -190745514 + MER69 DNA AcHobo 1 559 -1967 693 222 83 28 chr3 27291620 27291872 -190745286 + MER69 DNA AcHobo 2260 2525 -1 * 2232 95 0 13 chr3 27292082 27292386 -190744772 - AluSc SINE Alu -9 300 1 180 152 0 0 chr3 27293742 27293775 -190743383 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 773 193 138 0 chr3 27294797 27294942 -190742216 - FRAM SINE Alu -1 165 1 1100 308 106 14 chr3 27295745 27296187 -190740971 - MLT1H1 LTR MaLR -53 502 20 594 265 135 30 chr3 27297108 27297338 -190739820 - MIR SINE MIR -6 256 3 188 378 9 27 chr3 27297501 27297612 -190739546 + MIR SINE MIR 37 145 -63 707 224 85 6 chr3 27297681 27297846 -190739312 - MER45A DNA AcHobo 0 178 1 293 316 74 111 chr3 27298425 27299070 -190738088 + L2 LINE L2 2637 3272 0 189 366 43 21 chr3 27299969 27300062 -190737096 + MIR SINE MIR 46 140 -122 643 259 103 22 chr3 27300199 27300384 -190736774 + MIR SINE MIR 63 262 0 720 343 83 41 chr3 27300464 27301024 -190736134 - L2 LINE L2 -26 3246 2673 724 159 140 6 chr3 27301064 27301221 -190735937 + MER5A DNA MER1_type 9 186 -3 339 333 14 54 chr3 27301221 27301368 -190735790 - L2 LINE L2 -722 2592 2452 468 316 38 27 chr3 27302638 27302929 -190734229 - MLT1L LTR MaLR -14 601 225 235 336 41 34 chr3 27303223 27303369 -190733789 - MIR SINE MIR -111 151 5 493 255 183 7 chr3 27303536 27303689 -190733469 + MER5A DNA MER1_type 10 189 0 607 284 76 47 chr3 27303698 27303973 -190733185 + L2 LINE L2 3029 3311 -2 1237 193 47 22 chr3 27305219 27305536 -190731622 + AluJo SINE Alu 1 324 0 224 318 79 0 chr3 27306610 27306673 -190730485 + L2 LINE L2 3141 3208 -64 1517 99 5 0 chr3 27306747 27306960 -190730198 + L1PB1 LINE L1 5935 6148 -3 21 0 0 0 chr3 27307083 27307104 -190730054 + AT_rich Low_complexity Low_complexity 1 21 0 362 272 25 51 chr3 27308281 27308439 -190728719 + MER117 DNA MER1_type 44 197 0 2581 52 0 0 chr3 27308751 27309060 -190728098 + AluY SINE Alu 1 309 -2 649 211 0 8 chr3 27309461 27309589 -190727569 + FLAM_A SINE Alu 3 129 -4 503 79 34 0 chr3 27309681 27309770 -190727388 + L1PA13 LINE L1 6071 6162 -1 21 36 0 0 chr3 27309770 27309798 -190727360 + AT_rich Low_complexity Low_complexity 1 28 0 37 69 0 0 chr3 27309932 27310004 -190727154 + AT_rich Low_complexity Low_complexity 1 72 0 2265 121 0 3 chr3 27310077 27310390 -190726768 + AluSx SINE Alu 1 312 0 42 20 0 0 chr3 27310917 27310966 -190726192 + AT_rich Low_complexity Low_complexity 1 49 0 708 249 144 18 chr3 27311080 27311309 -190725849 - MIR SINE MIR 0 262 5 289 241 28 0 chr3 27311444 27311552 -190725606 + (TA)n Simple_repeat Simple_repeat 2 112 0 2189 239 55 73 chr3 27311660 27312486 -190724672 - MER21B LTR ERV1 -52 811 1 208 269 125 19 chr3 27312531 27312635 -190724523 - L3b LINE CR1 -166 1417 1303 375 302 89 40 chr3 27313955 27314180 -190722978 - MIR SINE MIR -6 256 21 513 216 64 0 chr3 27314298 27314423 -190722735 + MER58B DNA MER1_type 208 340 -1 2806 107 49 0 chr3 27315295 27315742 -190721416 - THE1A-int LTR MaLR -535 1045 577 1626 77 13 0 chr3 27315742 27315975 -190721183 - THE1A-int LTR MaLR -1344 236 1 2008 121 35 11 chr3 27315975 27316322 -190720836 - THE1A LTR MaLR 0 355 1 393 256 0 58 chr3 27316866 27317003 -190720155 + L1ME LINE L1 5530 5658 -463 23 33 0 0 chr3 27317237 27317267 -190719891 + AT_rich Low_complexity Low_complexity 1 30 0 271 356 61 44 chr3 27318591 27318771 -190718387 - MER91A DNA MER1_type -12 184 2 202 182 0 0 chr3 27319502 27319535 -190717623 + polypurine Low_complexity Low_complexity 1 33 0 991 161 56 5 chr3 27319600 27319802 -190717356 + MER6 DNA MER2_type -13 198 -78 1509 70 4 3 chr3 27319802 27320037 -190717121 - pTR5 LTR ERV1 -2053 385 49 321 235 0 0 chr3 27320037 27320118 -190717040 - LTR30 LTR ERV1 -98 624 544 2092 167 103 37 chr3 27320122 27320874 -190716284 - pTR5 LTR ERV1 -417 2021 741 2440 144 22 2 chr3 27320874 27321283 -190715875 + MER6 DNA MER2_type 188 864 -1 674 303 45 0 chr3 27323323 27323501 -190713657 - MER91A DNA MER1_type -10 186 1 24 0 0 0 chr3 27323975 27323999 -190713159 + AT_rich Low_complexity Low_complexity 1 24 0 496 373 34 28 chr3 27324123 27324450 -190712708 - L3 LINE CR1 -15 1562 1234 388 310 45 20 chr3 27325148 27325432 -190711726 - MLT1L LTR MaLR 0 615 224 24 0 0 0 chr3 27325612 27325636 -190711522 + AT_rich Low_complexity Low_complexity 1 24 0 572 61 0 12 chr3 27325700 27325782 -190711376 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 27 0 0 0 chr3 27325839 27325866 -190711292 + AT_rich Low_complexity Low_complexity 1 27 0 1191 319 94 33 chr3 27326179 27326395 -190710763 + L2 LINE L2 2034 2235 -1079 2423 82 3 0 chr3 27326395 27326701 -190710457 + AluSp SINE Alu 1 307 -6 1191 319 94 33 chr3 27326701 27327088 -190710070 + L2 LINE L2 2235 2674 -640 200 180 0 20 chr3 27327200 27327250 -190709908 + CT-rich Low_complexity Low_complexity 4 52 0 515 333 0 0 chr3 27327339 27327486 -190709672 - MIR3 SINE MIR -3 205 59 344 287 0 42 chr3 27327815 27327982 -190709176 + G-rich Low_complexity Low_complexity 3 162 0 211 289 0 40 chr3 27328054 27328130 -190709028 + G-rich Low_complexity Low_complexity 2 74 0 208 70 47 23 chr3 27328516 27328559 -190708599 + GA-rich Low_complexity Low_complexity 2 45 0 299 53 0 0 chr3 27328590 27328628 -190708530 + (CA)n Simple_repeat Simple_repeat 1 38 0 229 233 33 100 chr3 27328772 27328892 -190708266 - L2 LINE L2 -211 3102 2991 222 367 50 25 chr3 27328985 27329105 -190708053 - L2 LINE L2 -502 2812 2690 332 279 25 81 chr3 27329194 27329355 -190707803 + L3 LINE CR1 1425 1576 -1 326 326 10 77 chr3 27329547 27329743 -190707415 - MER5A DNA MER1_type 0 189 7 298 340 122 13 chr3 27329864 27330020 -190707138 + MIR SINE MIR 76 248 -14 9572 96 66 13 chr3 27380032 27381068 -190656090 - L1PBa LINE L1 -3944 2919 1624 2378 94 0 0 chr3 27381068 27381377 -190655781 + AluY SINE Alu 1 309 -2 9572 96 66 13 chr3 27381377 27381934 -190655224 - L1PBa LINE L1 -5239 1624 1098 1167 122 5 0 chr3 27381935 27382123 -190655035 - L1PBa LINE L1 -5814 1049 861 1790 149 12 28 chr3 27382127 27382448 -190654710 - THE1C LTR MaLR -40 335 20 5810 101 16 19 chr3 27382448 27384256 -190652902 + L1PA13 LINE L1 4354 6154 -9 243 0 0 0 chr3 27384256 27384283 -190652875 + (TA)n Simple_repeat Simple_repeat 1 27 0 716 281 128 76 chr3 27384648 27385146 -190652012 - MLT1H1 LTR MaLR 0 555 32 1858 155 7 0 chr3 27385205 27385489 -190651669 - AluSx SINE Alu -26 286 1 412 320 69 36 chr3 27385648 27385895 -190651263 + MIR SINE MIR 2 256 -6 234 0 0 0 chr3 27389150 27389176 -190647982 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2216 84 0 3 chr3 27389195 27389479 -190647679 - AluSc SINE Alu -26 283 1 1823 107 0 4 chr3 27389484 27389754 -190647404 - L1MA3 LINE L1 0 6305 6037 2636 185 136 49 chr3 27390081 27390511 -190646647 - L1MD2 LINE L1 -289 6053 5662 2217 113 7 0 chr3 27390511 27390820 -190646338 - AluSx SINE Alu 0 312 2 2636 185 136 49 chr3 27390820 27391189 -190645969 - L1MD2 LINE L1 -680 5662 5187 957 198 145 12 chr3 27391189 27391437 -190645721 - MER97c DNA MER1_type? -809 281 1 244 275 77 0 chr3 27391536 27391627 -190645531 + HAL1b LINE L1 578 675 -673 663 275 103 55 chr3 27391809 27392176 -190644982 - LTR16A LTR ERVL -48 402 18 509 204 10 0 chr3 27392244 27392347 -190644811 + FAM SINE Alu 71 174 -11 282 260 73 13 chr3 27392614 27392764 -190644394 + L1ME4a LINE L1 5963 6121 0 388 273 94 31 chr3 27393035 27393291 -190643867 - L1MD2 LINE L1 -2153 3976 3705 447 202 0 0 chr3 27393304 27393398 -190643760 + (TA)n Simple_repeat Simple_repeat 1 94 0 360 303 115 69 chr3 27393612 27394414 -190642744 - L1MD2 LINE L1 -2682 3447 2609 21 82 0 0 chr3 27394591 27394640 -190642518 + AT_rich Low_complexity Low_complexity 1 49 0 228 299 69 23 chr3 27394997 27395084 -190642074 + MIR SINE MIR 20 110 -152 274 383 22 36 chr3 27395553 27395775 -190641383 + L2 LINE L2 2536 2754 -560 272 407 38 25 chr3 27395951 27396187 -190640971 + L2 LINE L2 2699 2937 -377 213 39 0 0 chr3 27396283 27396309 -190640849 + (CCA)n Simple_repeat Simple_repeat 3 28 0 226 293 67 13 chr3 27396479 27396554 -190640604 + MLT1J LTR MaLR 72 150 -361 316 296 21 88 chr3 27396600 27396840 -190640318 - L1ME3A LINE L1 -219 5951 5728 240 357 10 10 chr3 27396947 27397045 -190640113 - L1MD2 LINE L1 -5595 524 427 610 286 84 14 chr3 27397849 27398062 -190639096 + MIR SINE MIR 20 247 -15 27 0 0 0 chr3 27398219 27398246 -190638912 + AT_rich Low_complexity Low_complexity 1 27 0 1078 8 0 0 chr3 27398246 27398369 -190638789 - L1HS LINE L1 0 6155 6033 3841 159 50 18 chr3 27398683 27399369 -190637789 - MER50 LTR ERV1 -26 708 1 407 273 135 22 chr3 27399481 27399792 -190637366 + L1MC/D LINE L1 5267 5612 -2196 191 309 12 24 chr3 27402695 27402779 -190634379 - MIR SINE MIR -56 206 124 23 0 0 0 chr3 27403706 27403729 -190633429 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr3 27407046 27407080 -190630078 + AT_rich Low_complexity Low_complexity 1 34 0 36825 63 2 2 chr3 27408222 27413774 -190623384 + L1PA5 LINE L1 596 6145 -9 401 264 16 25 chr3 27414090 27414211 -190622947 - MER103 DNA DNA -46 120 1 219 371 77 21 chr3 27414499 27414642 -190622516 - MIR3 SINE MIR 0 208 58 434 302 49 65 chr3 27414927 27415346 -190621812 + MLT1L LTR MaLR 120 587 -28 362 269 71 50 chr3 27415820 27416002 -190621156 + HAL1 LINE L1 1365 1550 -957 689 185 23 6 chr3 27416030 27416203 -190620955 + CT-rich Low_complexity Low_complexity 2 177 0 426 311 44 11 chr3 27417049 27417229 -190619929 + L1M4 LINE L1 2276 2461 -3685 912 209 17 0 chr3 27417410 27417582 -190619576 - MER20 DNA MER1_type -1 218 44 290 250 12 0 chr3 27417597 27417677 -190619481 + L1MC4a LINE L1 5851 5931 -1877 235 255 34 67 chr3 27418103 27418252 -190618906 + L1MC/D LINE L1 5678 5821 -1987 797 244 42 9 chr3 27418258 27418475 -190618683 + MER58A DNA MER1_type 1 224 0 270 234 188 73 chr3 27418495 27418713 -190618445 - MER20B DNA MER1_type -22 761 519 278 316 115 7 chr3 27419205 27419344 -190617814 - MER20B DNA MER1_type -582 201 48 1688 211 75 56 chr3 27419985 27420505 -190616653 - MER34 LTR ERV1 0 542 13 1807 143 47 7 chr3 27420538 27420838 -190616320 - AluJb SINE Alu 0 312 1 202 315 0 0 chr3 27421960 27422014 -190615144 + CT-rich Low_complexity Low_complexity 4 57 0 307 275 47 31 chr3 27423271 27423464 -190613694 - L1ME4a LINE L1 -237 5884 5689 1047 308 50 8 chr3 27423477 27423837 -190613321 - L2 LINE L2 0 3313 2939 22 0 0 0 chr3 27424554 27424576 -190612582 + AT_rich Low_complexity Low_complexity 1 22 0 252 306 35 35 chr3 27424884 27425054 -190612104 + L2 LINE L2 2785 2954 -360 324 59 24 47 chr3 27425281 27425366 -190611792 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr3 27426734 27426755 -190610403 + AT_rich Low_complexity Low_complexity 1 21 0 191 315 0 0 chr3 27426920 27426978 -190610180 - MIR SINE MIR -63 145 97 615 345 97 50 chr3 27427141 27427948 -190609210 + L2 LINE L2 1932 2776 -538 226 318 139 35 chr3 27428073 27428246 -190608912 + L2 LINE L2 3119 3309 -4 259 310 43 26 chr3 27428249 27428365 -190608793 - MIR SINE MIR -96 166 49 26 50 0 0 chr3 27428365 27428405 -190608753 + AT_rich Low_complexity Low_complexity 1 40 0 42187 37 23 0 chr3 27428497 27434512 -190602646 - L1PA2 LINE L1 -2 6153 1 312 207 35 11 chr3 27435359 27435446 -190601712 - MER53 DNA DNA -97 92 4 610 325 109 32 chr3 27435938 27436249 -190600909 - MLT1J1 LTR MaLR -110 336 2 2243 103 3 3 chr3 27437246 27437547 -190599611 + AluSc SINE Alu 1 301 -8 947 244 29 22 chr3 27439074 27439389 -190597769 + L1ME3A LINE L1 4790 5106 -1040 371 287 106 51 chr3 27439457 27439750 -190597408 + L1ME3A LINE L1 5323 5631 -539 369 284 98 5 chr3 27439795 27439989 -190597169 + L1ME3A LINE L1 5945 6156 -14 368 345 88 5 chr3 27440184 27440378 -190596780 + MIR SINE MIR 37 246 -16 195 222 0 0 chr3 27440537 27440582 -190596576 + (TAA)n Simple_repeat Simple_repeat 1 45 0 917 270 66 38 chr3 27440669 27441065 -190596093 - MLT1I LTR MaLR -2 407 1 1915 120 24 14 chr3 27441267 27441559 -190595599 - AluSx SINE Alu -17 295 1 28 29 0 0 chr3 27441815 27441850 -190595308 + AT_rich Low_complexity Low_complexity 1 35 0 320 202 27 32 chr3 27442489 27442608 -190594550 + L1ME LINE L1 5426 5545 -621 195 354 46 0 chr3 27442623 27442688 -190594470 + L3 LINE CR1 1038 1105 -472 431 309 70 45 chr3 27442875 27443118 -190594040 + L3 LINE CR1 1130 1378 -199 441 218 27 0 chr3 27443120 27443230 -190593928 + L1MA4 LINE L1 6188 6300 0 260 326 106 28 chr3 27445256 27445397 -190591761 + MIR SINE MIR 61 212 -50 654 202 12 152 chr3 27446668 27446911 -190590247 + MIR SINE MIR 30 237 -25 904 238 58 0 chr3 27447012 27447218 -190589940 - MLT1E3 LTR MaLR 0 624 407 1715 193 3 7 chr3 27447515 27447816 -190589342 - AluJo SINE Alu -12 300 1 552 352 38 0 chr3 27447818 27448028 -190589130 + MIR SINE MIR 45 262 0 221 214 0 24 chr3 27448232 27448316 -190588842 + CT-rich Low_complexity Low_complexity 3 84 0 205 183 50 0 chr3 27449960 27450020 -190587138 + (TA)n Simple_repeat Simple_repeat 2 64 0 201 74 0 0 chr3 27450205 27450232 -190586926 + (A)n Simple_repeat Simple_repeat 1 27 0 245 290 151 43 chr3 27450719 27450905 -190586253 + MIR SINE MIR 52 257 -5 363 186 0 0 chr3 27451806 27451865 -190585293 - L2 LINE L2 0 3313 3255 261 57 0 0 chr3 27452363 27452398 -190584760 + (GA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr3 27452866 27452895 -190584263 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 27453226 27453247 -190583911 + AT_rich Low_complexity Low_complexity 1 21 0 203 138 0 0 chr3 27454539 27454568 -190582590 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 339 391 19 6 chr3 27455160 27455321 -190581837 + MIR3 SINE MIR 17 179 -29 254 280 21 0 chr3 27455370 27455463 -190581695 + L1MC4 LINE L1 6611 6705 -1337 278 232 293 0 chr3 27456041 27456140 -190581018 - L2 LINE L2 -15 3298 3171 418 308 63 0 chr3 27456532 27456675 -190580483 + MIR SINE MIR 110 261 -1 216 0 0 0 chr3 27458118 27458142 -190579016 + (A)n Simple_repeat Simple_repeat 1 24 0 316 283 10 20 chr3 27459027 27459126 -190578032 - MER5A DNA MER1_type -83 106 9 293 315 39 24 chr3 27459931 27460058 -190577100 - MER103 DNA DNA -2 164 36 215 204 0 41 chr3 27460431 27460480 -190576678 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 351 0 0 0 chr3 27461247 27461286 -190575872 + (TA)n Simple_repeat Simple_repeat 1 39 0 255 282 76 32 chr3 27462931 27463208 -190573950 - L1M4 LINE L1 -1528 4618 4330 259 345 43 9 chr3 27463589 27463705 -190573453 + MIR SINE MIR 33 152 -56 284 275 0 0 chr3 27464584 27464653 -190572505 - MIR3 SINE MIR -4 204 136 258 323 0 0 chr3 27464735 27464800 -190572358 + MIR3 SINE MIR 112 176 -32 13496 204 23 19 chr3 27465235 27469649 -190567509 + L1PA16 LINE L1 709 5111 -1758 273 29 0 0 chr3 27469649 27469683 -190567475 + (CA)n Simple_repeat Simple_repeat 1 34 0 13496 204 23 19 chr3 27469683 27471442 -190565716 + L1PA16 LINE L1 5111 6862 -7 1199 179 18 14 chr3 27471443 27471666 -190565492 + MLT1B LTR MaLR 165 388 -2 244 333 49 14 chr3 27472578 27472722 -190564436 - MIR SINE MIR -11 251 103 22 35 0 0 chr3 27472832 27472861 -190564297 + AT_rich Low_complexity Low_complexity 1 29 0 653 243 50 30 chr3 27473050 27473252 -190563906 - MIR SINE MIR 0 262 57 417 297 87 48 chr3 27473441 27473575 -190563583 - L1ME LINE L1 -445 5702 5575 399 66 105 53 chr3 27473575 27473651 -190563507 + MADE1 DNA Mariner 1 80 0 417 297 87 48 chr3 27473651 27473924 -190563234 - L1ME LINE L1 -572 5575 5279 407 321 110 52 chr3 27474340 27474841 -190562317 - L1ME LINE L1 -5279 840 311 313 175 21 113 chr3 27475036 27475133 -190562025 + L1MC4 LINE L1 6620 6707 -1335 268 388 56 6 chr3 27475971 27476131 -190561027 - L2 LINE L2 -238 3034 2867 422 295 60 12 chr3 27476317 27476483 -190560675 - Charlie8 DNA MER1_type -2239 178 5 2747 10 0 3 chr3 27477074 27477385 -190559773 - AluY SINE Alu -1 310 1 302 311 141 23 chr3 27477871 27478048 -190559110 + MIR SINE MIR 18 215 -47 22 0 0 0 chr3 27479665 27479687 -190557471 + AT_rich Low_complexity Low_complexity 1 22 0 304 365 81 5 chr3 27480280 27480477 -190556681 - MIR SINE MIR 0 262 51 343 322 35 9 chr3 27480560 27480675 -190556483 - L2 LINE L2 -6 3266 3149 26 30 0 0 chr3 27481147 27481180 -190555978 + AT_rich Low_complexity Low_complexity 1 33 0 4496 113 35 0 chr3 27481181 27481522 -190555636 - L1PB1 LINE L1 -6 6145 5817 189 0 0 0 chr3 27481522 27481543 -190555615 + (TG)n Simple_repeat Simple_repeat 2 22 0 4496 113 35 0 chr3 27481543 27481889 -190555269 - L1PB1 LINE L1 -334 5817 5434 3515 209 29 7 chr3 27481889 27482745 -190554413 + L1PB1 LINE L1 4534 5406 -754 252 261 225 46 chr3 27483630 27483910 -190553248 + L3 LINE CR1 1070 1399 -178 216 322 85 34 chr3 27484393 27484511 -190552647 + L3 LINE CR1 1371 1494 -83 602 255 49 27 chr3 27486449 27486633 -190550525 - MIR SINE MIR -16 246 59 2443 51 0 10 chr3 27487048 27487359 -190549799 - AluY SINE Alu -3 308 1 3671 95 33 0 chr3 27487460 27488006 -190549152 - L1PA13 LINE L1 0 6163 5600 9941 168 15 27 chr3 27488006 27489942 -190547216 - L1PA13 LINE L1 -1146 5000 3088 417 299 103 60 chr3 27491352 27491536 -190545622 - MIR3 SINE MIR -11 197 6 835 181 30 35 chr3 27491839 27492038 -190545120 + L1MD3 LINE L1 7796 7993 -2 1192 142 22 13 chr3 27492865 27493090 -190544068 + L1MA9 LINE L1 6086 6312 0 335 256 178 0 chr3 27493152 27493242 -190543916 + MIR SINE MIR 48 153 -109 233 342 51 8 chr3 27493279 27493396 -190543762 + MIR SINE MIR 137 258 -4 324 188 79 14 chr3 27494740 27494828 -190542330 + MER5A DNA MER1_type 76 188 -1 270 218 11 35 chr3 27495277 27495364 -190541794 - L1MA10 LINE L1 -9 6325 6241 277 322 26 26 chr3 27495451 27495566 -190541592 - L2 LINE L2 -200 3072 2958 248 257 57 38 chr3 27496703 27496808 -190540350 + MIR3 SINE MIR 81 187 -21 450 316 6 6 chr3 27497762 27497933 -190539225 + GA-rich Low_complexity Low_complexity 2 172 0 21 0 0 0 chr3 27498075 27498096 -190539062 + AT_rich Low_complexity Low_complexity 1 21 0 2469 123 0 8 chr3 27498217 27498584 -190538574 - THE1B LTR MaLR 0 364 1 289 270 63 9 chr3 27498642 27498753 -190538405 - MIR SINE MIR -3 259 143 552 248 81 10 chr3 27498771 27498969 -190538189 + LTR50 LTR ERVL 9 220 -575 425 309 75 12 chr3 27499042 27499337 -190537821 + LTR33A LTR ERVL 291 523 0 440 269 10 0 chr3 27499343 27499447 -190537711 - MIR SINE MIR -111 151 47 188 286 13 78 chr3 27499758 27499835 -190537323 - L2 LINE L2 -67 3205 3134 275 279 47 0 chr3 27500767 27500853 -190536305 - MIR SINE MIR -71 191 102 45 79 0 0 chr3 27500885 27500986 -190536172 + AT_rich Low_complexity Low_complexity 1 101 0 407 200 0 9 chr3 27501258 27501363 -190535795 + (TA)n Simple_repeat Simple_repeat 1 104 0 2305 266 83 38 chr3 27501576 27503383 -190533775 + L1ME3A LINE L1 4266 6157 -13 235 327 55 42 chr3 27503456 27503673 -190533485 + HAL1 LINE L1 2245 2464 -43 315 410 36 7 chr3 27503729 27503868 -190533290 - L2 LINE L2 -9 3263 3121 238 239 11 11 chr3 27504661 27504749 -190532409 + GA-rich Low_complexity Low_complexity 3 90 0 447 286 94 54 chr3 27506027 27506230 -190530928 - MIR SINE MIR -31 231 21 243 0 0 0 chr3 27507177 27507204 -190529954 + (TA)n Simple_repeat Simple_repeat 2 28 0 225 248 178 0 chr3 27509459 27509560 -190527598 - MIR SINE MIR -71 191 73 1586 167 3 14 chr3 27509988 27510281 -190526877 + AluJb SINE Alu 1 290 -22 355 370 7 7 chr3 27510296 27510431 -190526727 - L2 LINE L2 -1 3312 3178 222 308 0 13 chr3 27510422 27510500 -190526658 - L2 LINE L2 -711 2603 2527 * 2808 139 12 10 chr3 27510768 27511250 -190525908 + L1PB4 LINE L1 5673 6155 -1 1663 171 134 0 chr3 27511425 27511746 -190525412 + MLT1A1 LTR MaLR 2 365 0 477 0 0 0 chr3 27512030 27512083 -190525075 + (TG)n Simple_repeat Simple_repeat 2 54 0 206 328 0 30 chr3 27513528 27513595 -190523563 + L2 LINE L2 3249 3313 0 200 280 40 67 chr3 27514214 27514289 -190522869 - L2 LINE L2 -12 3260 3188 21 36 0 0 chr3 27514310 27514338 -190522820 + AT_rich Low_complexity Low_complexity 1 28 0 418 306 102 25 chr3 27515869 27516065 -190521093 - MIR SINE MIR -7 255 45 5479 138 31 28 chr3 27516379 27517701 -190519457 - L1MA8 LINE L1 -34 6257 4933 204 97 0 0 chr3 27517830 27517861 -190519297 + (TC)n Simple_repeat Simple_repeat 2 32 0 312 276 70 65 chr3 27518469 27518587 -190518571 - L1ME LINE L1 -5852 218 97 2363 118 36 16 chr3 27518587 27518952 -190518206 + THE1C LTR MaLR 3 374 -1 312 276 70 65 chr3 27518952 27519047 -190518111 - L1ME LINE L1 -5973 97 4 6822 53 23 5 chr3 27519555 27520832 -190516326 - L1PA6 LINE L1 -3 6151 4839 1697 140 81 0 chr3 27520841 27521126 -190516032 - MER2 DNA MER2_type -37 308 1 425 333 102 20 chr3 27521329 27521789 -190515369 + L1ME LINE L1 5318 5815 -347 1143 286 67 30 chr3 27521943 27522642 -190514516 + L1M4 LINE L1 4650 5374 -772 22 0 0 0 chr3 27522771 27522793 -190514365 + AT_rich Low_complexity Low_complexity 1 22 0 9120 115 21 23 chr3 27523010 27523810 -190513348 + Tigger1 DNA MER2_type 1002 1802 -616 1718 169 33 3 chr3 27523810 27524111 -190513047 - AluJo SINE Alu -2 310 1 9120 115 21 23 chr3 27524111 27524536 -190512622 + Tigger1 DNA MER2_type 1802 2226 -192 2292 97 10 0 chr3 27524536 27524846 -190512312 - AluSp SINE Alu 0 313 1 9120 115 21 23 chr3 27524846 27525039 -190512119 + Tigger1 DNA MER2_type 2226 2418 0 285 98 0 0 chr3 27525186 27525227 -190511931 + (CA)n Simple_repeat Simple_repeat 2 42 0 368 313 119 51 chr3 27525561 27526173 -190510985 + L2 LINE L2 2636 3312 -1 207 295 77 13 chr3 27526397 27526475 -190510683 + L3b LINE CR1 1296 1378 -205 22 35 0 0 chr3 27526905 27526934 -190510224 + AT_rich Low_complexity Low_complexity 1 29 0 1106 110 0 0 chr3 27527324 27527479 -190509679 - AluSg/x SINE Alu -11 301 147 28 29 0 0 chr3 27527938 27527973 -190509185 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr3 27528726 27528763 -190508395 + AT_rich Low_complexity Low_complexity 1 37 0 365 300 57 76 chr3 27529437 27529647 -190507511 - MIR SINE MIR -29 233 28 362 177 25 13 chr3 27529821 27529900 -190507258 + L1ME3A LINE L1 6086 6165 -5 468 0 0 0 chr3 27530081 27530133 -190507025 + (TG)n Simple_repeat Simple_repeat 2 53 0 196 274 0 0 chr3 27530140 27530191 -190506967 - MIR3 SINE MIR -4 204 154 2219 109 36 20 chr3 27530207 27530565 -190506593 + THE1B LTR MaLR 1 364 0 182 369 106 19 chr3 27530824 27530984 -190506174 - MIR SINE MIR -15 247 74 21 0 0 0 chr3 27532073 27532094 -190505064 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 27533497 27533518 -190503640 + AT_rich Low_complexity Low_complexity 1 21 0 301 338 150 33 chr3 27586771 27587132 -190450026 - L2 LINE L2 0 3272 2870 534 65 0 13 chr3 27587342 27587419 -190449739 - L1PA5 LINE L1 -1 6153 6078 2297 146 32 0 chr3 27588045 27588450 -190448708 + L1MA4 LINE L1 5882 6299 -1 227 398 62 0 chr3 27588805 27588918 -190448240 + MIR SINE MIR 16 135 -73 2431 74 0 0 chr3 27590934 27591233 -190445925 + AluY SINE Alu 13 311 0 294 242 36 113 chr3 27593986 27594180 -190442978 - MIR SINE MIR 0 262 84 2515 141 14 16 chr3 27594281 27594715 -190442443 - Tigger2a DNA MER2_type 0 434 2 291 289 126 44 chr3 27595416 27595575 -190441583 + L3 LINE CR1 1355 1526 -51 248 358 131 7 chr3 27595586 27595723 -190441435 + MER5A DNA MER1_type 36 189 0 232 329 0 13 chr3 27595854 27595933 -190441225 - MER5A DNA MER1_type 0 189 112 463 299 58 6 chr3 27596801 27596975 -190440183 + MIR SINE MIR 74 256 -6 371 275 28 39 chr3 27597002 27597180 -190439978 + CT-rich Low_complexity Low_complexity 3 178 0 511 255 161 19 chr3 27598853 27599014 -190438144 + MER5A DNA MER1_type 4 187 -2 2341 101 0 0 chr3 27599022 27599330 -190437828 + AluSc SINE Alu 1 308 -1 397 255 20 0 chr3 27599361 27599463 -190437695 - MER5B DNA MER1_type 0 178 75 419 143 214 0 chr3 27599466 27599550 -190437608 + MER5A DNA MER1_type 88 189 0 917 306 41 9 chr3 27600533 27600853 -190436305 - LTR16C LTR ERVL -14 477 148 350 195 13 0 chr3 27600980 27601057 -190436101 - LTR41 LTR ERVL -1 772 695 379 127 28 0 chr3 27601379 27601450 -190435708 - LTR41 LTR ERVL -583 190 118 1857 156 80 62 chr3 27601621 27602070 -190435088 - MSTB2 LTR MaLR 0 457 1 352 123 0 74 chr3 27602082 27602163 -190434995 + MADE1 DNA Mariner 6 80 0 252 0 0 0 chr3 27602637 27602665 -190434493 + (A)n Simple_repeat Simple_repeat 1 28 0 2274 76 0 0 chr3 27602669 27602971 -190434187 + L1PA6 LINE L1 5851 6152 -2 189 347 74 25 chr3 27603441 27603562 -190433596 + L3 LINE CR1 1440 1566 -11 378 304 126 0 chr3 27604097 27604232 -190432926 - MIR SINE MIR -14 248 97 843 303 24 12 chr3 27604550 27604804 -190432354 - MIR SINE MIR -3 259 3 202 237 0 34 chr3 27605713 27605772 -190431386 + CT-rich Low_complexity Low_complexity 2 58 0 1763 247 99 53 chr3 27606229 27606641 -190430517 + MLT1E LTR MaLR 1 448 -145 1042 156 62 9 chr3 27606641 27606866 -190430292 - L1MA8 LINE L1 -4 6287 6051 1763 247 99 53 chr3 27606866 27607020 -190430138 + MLT1E LTR MaLR 448 593 0 220 300 0 20 chr3 27607860 27607910 -190429248 + MIR SINE MIR 20 68 -194 18879 172 62 23 chr3 27607914 27608387 -190428771 - L1 LINE L1 -2106 5459 5005 1755 183 0 0 chr3 27608387 27608671 -190428487 - AluJo SINE Alu -9 303 20 18879 172 62 23 chr3 27608671 27610567 -190426591 - L1 LINE L1 -2560 5005 3183 2259 117 3 0 chr3 27610567 27610867 -190426291 - AluSp SINE Alu -12 301 1 18879 172 62 23 chr3 27610867 27611822 -190425336 - L1 LINE L1 -4382 3183 2266 201 74 0 0 chr3 27611822 27611849 -190425309 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 18879 172 62 23 chr3 27611849 27613761 -190423397 - L1 LINE L1 -5299 2266 17 1672 176 10 7 chr3 27614369 27614658 -190422500 + AluJo SINE Alu 1 290 -22 444 151 0 2 chr3 27614928 27615005 -190422153 - L1PB3 LINE L1 -56 6095 6020 7410 35 6 1 chr3 27615006 27616583 -190420575 - L1PA4 LINE L1 0 6155 4574 273 208 69 14 chr3 27616873 27616945 -190420213 + L2 LINE L2 3173 3248 -65 217 227 0 0 chr3 27616981 27617025 -190420133 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1617 226 106 22 chr3 27618728 27619192 -190417966 + L1ME1 LINE L1 5659 6161 -5 33 66 0 0 chr3 27619196 27619257 -190417901 + AT_rich Low_complexity Low_complexity 1 61 0 1359 214 191 19 chr3 27619399 27619829 -190417329 + MLT1D LTR MaLR 1 504 -1 342 0 0 0 chr3 27620991 27621029 -190416129 + (CA)n Simple_repeat Simple_repeat 2 39 0 312 27 0 0 chr3 27621028 27621065 -190416093 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 1779 175 0 10 chr3 27621086 27621383 -190415775 - AluSx SINE Alu -18 294 1 30 27 0 0 chr3 27621551 27621588 -190415570 + AT_rich Low_complexity Low_complexity 1 37 0 267 206 79 0 chr3 27621669 27621732 -190415426 + L1ME LINE L1 5547 5614 -507 2725 156 0 5 chr3 27624193 27624623 -190412535 + MSTA LTR MaLR 1 428 0 354 298 77 40 chr3 27624759 27625007 -190412151 - L1M4 LINE L1 -1299 4847 4591 278 130 130 0 chr3 27625036 27625105 -190412053 + L1MA8 LINE L1 6209 6286 -5 23 33 0 0 chr3 27625195 27625225 -190411933 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 27625275 27625304 -190411854 + AT_rich Low_complexity Low_complexity 1 29 0 1357 183 50 47 chr3 27625433 27625721 -190411437 - L1MC2 LINE L1 -8 6336 6045 5012 111 83 0 chr3 27625721 27626484 -190410674 - LTR12 LTR ERV1 0 826 1 1357 183 50 47 chr3 27626484 27626512 -190410646 - L1MC2 LINE L1 -299 6045 6019 1220 68 6 45 chr3 27626512 27626689 -190410469 + AluY SINE Alu 134 303 -8 1046 171 5 32 chr3 27626732 27626948 -190410210 - L1MC2 LINE L1 -327 6017 5808 582 82 0 0 chr3 27626969 27627054 -190410104 - Alu SINE Alu 0 309 225 1009 81 0 0 chr3 27627054 27627190 -190409968 + AluY SINE Alu 169 304 -7 225 222 0 19 chr3 27627732 27627786 -190409372 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 21 71 0 0 chr3 27629466 27629508 -190407650 + AT_rich Low_complexity Low_complexity 1 42 0 385 287 149 23 chr3 27629790 27629964 -190407194 + MLT1I LTR MaLR 100 295 -114 2044 195 42 26 chr3 27630049 27630501 -190406657 - MLT1C LTR MaLR 0 467 9 306 0 0 0 chr3 27630956 27630990 -190406168 + (CA)n Simple_repeat Simple_repeat 1 34 0 185 289 93 41 chr3 27632212 27632309 -190404849 - L2 LINE L2 -903 2411 2310 2144 150 3 57 chr3 27632886 27633273 -190403885 - MER47A DNA MER2_type 0 366 1 469 292 83 50 chr3 27634686 27634926 -190402232 - MIR SINE MIR 0 262 15 235 208 38 0 chr3 27634936 27634989 -190402169 + (CATA)n Simple_repeat Simple_repeat 2 56 0 292 307 13 0 chr3 27635329 27635404 -190401754 + MLT1L LTR MaLR 413 488 -127 2226 120 38 14 chr3 27636189 27636555 -190400603 - THE1C LTR MaLR 0 375 1 1489 260 70 24 chr3 27637899 27638412 -190398746 + MLT1F1 LTR MaLR 27 567 0 759 235 71 6 chr3 27638725 27638908 -190398250 - MER63A DNA MER1_type -14 196 2 1003 191 54 33 chr3 27639202 27639443 -190397715 - MLT2B3 LTR ERVL -308 246 1 22311 38 0 0 chr3 27639801 27643299 -190393859 + L1PA4 LINE L1 2646 6144 -11 32 26 0 0 chr3 27643299 27643338 -190393820 + AT_rich Low_complexity Low_complexity 1 39 0 629 224 60 27 chr3 27644102 27644285 -190392873 + L1ME3A LINE L1 5973 6161 -9 216 286 0 88 chr3 27644700 27644791 -190392367 + MIR SINE MIR 20 102 -160 261 282 59 0 chr3 27645247 27645332 -190391826 + MLT1K LTR MaLR 499 588 0 3566 131 24 2 chr3 27645512 27646085 -190391073 + L1PA16 LINE L1 5581 6166 0 544 286 21 87 chr3 27646592 27646833 -190390325 - MIR SINE MIR 0 262 38 1318 184 0 0 chr3 27646843 27647055 -190390103 - AluJb SINE Alu -22 290 79 603 178 9 0 chr3 27648142 27648249 -190388909 - MLT2F LTR ERVL 0 663 556 35562 36 2 1 chr3 27648260 27653386 -190383772 - L1PA3 LINE L1 -3 6152 1024 349 311 68 21 chr3 27653419 27653609 -190383549 + L1M4 LINE L1 3754 3952 -2194 239 221 26 13 chr3 27653735 27653812 -190383346 + L1M4 LINE L1 4108 4185 -1961 29 0 0 0 chr3 27653883 27653912 -190383246 + AT_rich Low_complexity Low_complexity 1 29 0 5878 181 12 10 chr3 27653923 27656064 -190381094 - L1PA16 LINE L1 0 6166 4025 216 188 0 0 chr3 27656101 27656149 -190381009 + (TTAAA)n Simple_repeat Simple_repeat 4 51 0 219 69 0 0 chr3 27656560 27656589 -190380569 + (GA)n Simple_repeat Simple_repeat 2 30 0 1506 172 181 3 chr3 27656617 27656920 -190380238 - Tigger1 DNA MER2_type -1 2417 2061 943 345 7 29 chr3 27656926 27657378 -190379780 + L1M3a LINE L1 11 452 -5503 6755 134 7 13 chr3 27657489 27658324 -190378834 + L1MA2 LINE L1 4839 5666 -638 2072 122 14 0 chr3 27658324 27658611 -190378547 + AluSc SINE Alu 1 291 -18 6755 134 7 13 chr3 27658611 27659247 -190377911 + L1MA2 LINE L1 5666 6304 0 4854 162 28 45 chr3 27659265 27660672 -190376486 + L1MA4 LINE L1 4369 5736 -564 1984 92 26 3 chr3 27660672 27660975 -190376183 + L1MA2 LINE L1 5995 6304 0 4854 162 28 45 chr3 27660975 27661517 -190375641 + L1MA4 LINE L1 5736 6285 -15 12414 144 19 13 chr3 27661519 27663577 -190373581 - Tigger1 DNA MER2_type -332 2086 15 363 302 4 146 chr3 27663653 27663782 -190373376 + MIR SINE MIR 16 89 -173 2119 128 0 0 chr3 27663782 27664078 -190373080 + AluSx SINE Alu 2 297 -15 363 302 4 146 chr3 27664078 27664216 -190372942 + MIR SINE MIR 89 245 -17 7201 38 22 0 chr3 27664408 27665288 -190371870 + L1PA3 LINE L1 5254 6152 -3 4757 184 73 55 chr3 27666105 27667299 -190369859 - Charlie1a DNA MER1_type -1306 1455 229 2179 116 30 48 chr3 27667299 27667510 -190369648 - THE1B LTR MaLR 0 364 160 2135 104 4 0 chr3 27667510 27667813 -190369345 + AluSg SINE Alu 5 308 0 2179 116 30 48 chr3 27667813 27667971 -190369187 - THE1B LTR MaLR -204 160 1 4757 184 73 55 chr3 27667971 27668204 -190368954 - Charlie1a DNA MER1_type -2532 229 2 200 191 0 24 chr3 27668678 27668720 -190368438 - MIR SINE MIR -57 151 111 327 350 75 15 chr3 27668734 27668934 -190368224 - L3 LINE CR1 -9 1568 1357 326 294 103 0 chr3 27668948 27669074 -190368084 - L3 LINE CR1 -549 1028 890 257 321 41 41 chr3 27669227 27669445 -190367713 - L3 LINE CR1 -769 808 591 304 274 74 0 chr3 27669936 27670031 -190367127 + MIR SINE MIR 161 262 0 269 258 0 0 chr3 27670790 27670856 -190366302 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 2484 122 8 16 chr3 27672218 27672596 -190364562 - THE1C LTR MaLR 0 375 1 6788 111 253 34 chr3 27672596 27673892 -190363266 - THE1C-int LTR MaLR 0 1580 1 2319 126 24 16 chr3 27673892 27674264 -190362894 - THE1C LTR MaLR 0 375 1 1587 197 0 48 chr3 27674329 27674685 -190362473 - MER44D DNA MER2_type 0 609 1 287 307 31 51 chr3 27674713 27675006 -190362152 - HAL1 LINE L1 -839 1668 1382 6178 121 40 9 chr3 27675052 27676088 -190361070 - L1MA1 LINE L1 0 7721 6654 2185 133 8 39 chr3 27676090 27676475 -190360683 - THE1C LTR MaLR -2 373 1 5641 128 38 5 chr3 27676475 27677347 -190359811 - THE1C-int LTR MaLR 0 1580 680 1764 143 5 215 chr3 27677370 27678040 -190359118 - L1MA1 LINE L1 -907 6658 6130 * 9579 172 21 13 chr3 27678020 27680635 -190356523 - L1MA1 LINE L1 -1940 5625 2990 4347 227 20 12 chr3 27680632 27681532 -190355626 - L1MA1 LINE L1 -6640 925 19 * 219 36 0 0 chr3 27681808 27681836 -190355322 + (TTA)n Simple_repeat Simple_repeat 3 30 0 12384 27 1 0 chr3 27681836 27684059 -190353099 - L1PA3 LINE L1 -18 6137 3913 9836 29 3 0 chr3 27684059 27685263 -190351895 + L1P LINE L1 2509 3716 -2430 249 290 0 0 chr3 27686610 27686672 -190350486 - L2 LINE L2 -2 3311 3250 587 258 96 18 chr3 27686832 27687089 -190350069 + LTR16A1 LTR ERVL 160 441 -16 241 360 171 21 chr3 27687098 27687337 -190349821 - L2 LINE L2 -33 3280 3006 204 351 211 18 chr3 27687947 27688061 -190349097 + L2 LINE L2 3137 3272 0 1040 180 83 7 chr3 27688163 27688441 -190348717 - MER33 DNA MER1_type 0 324 26 463 165 28 92 chr3 27688647 27688756 -190348402 - MER20 DNA MER1_type -116 103 2 420 359 34 94 chr3 27689569 27689984 -190347174 - L2 LINE L2 0 3272 2883 181 308 26 51 chr3 27691405 27691483 -190345675 - L2 LINE L2 -4 3268 3193 316 250 18 107 chr3 27691768 27691880 -190345278 - MER91B DNA MER1_type 0 190 89 390 244 55 55 chr3 27691898 27692025 -190345133 - MER91B DNA MER1_type -62 128 2 335 294 67 0 chr3 27692184 27692303 -190344855 + Charlie8 DNA MER1_type 126 252 -2165 1095 178 25 0 chr3 27692490 27692687 -190344471 - MER3 DNA MER1_type -4 205 4 682 194 0 8 chr3 27692908 27693042 -190344116 - MLT1D LTR MaLR 0 505 373 12126 67 3 1 chr3 27693043 27694667 -190342491 - L1PA5 LINE L1 -2136 4010 2384 10593 57 3 6 chr3 27694667 27696809 -190340349 + L1PA5 LINE L1 4018 6154 0 1189 219 119 53 chr3 27696840 27697200 -190339958 - MLT1D LTR MaLR -119 386 3 1575 204 120 14 chr3 27698042 27698400 -190338758 + MSTD LTR MaLR 1 396 0 298 382 115 0 chr3 27700113 27700278 -190336880 + MIR3 SINE MIR 23 206 -2 287 333 83 24 chr3 27700433 27700601 -190336557 - MIR SINE MIR -11 251 74 571 317 85 40 chr3 27700769 27701225 -190335933 - L1MC/D LINE L1 -376 5745 5322 3164 164 29 5 chr3 27701583 27702139 -190335019 + LTR24B LTR ERV1 1 569 -7 824 293 19 64 chr3 27702139 27702394 -190334764 + LTR16A1 LTR ERVL 103 339 -118 2053 132 127 18 chr3 27702394 27702780 -190334378 + MSTA LTR MaLR 1 428 0 824 293 19 64 chr3 27702780 27702883 -190334275 + LTR16A1 LTR ERVL 339 445 -12 307 340 87 20 chr3 27704107 27704257 -190332901 + MIR3 SINE MIR 42 201 -7 513 313 31 10 chr3 27706137 27706328 -190330830 - MIR3 SINE MIR -1 207 11 230 310 0 0 chr3 27706317 27706375 -190330783 - L2 LINE L2 -10 3303 3246 * 2455 235 59 21 chr3 27706424 27706917 -190330241 + L1MD2 LINE L1 4381 4921 -1225 2631 36 3 0 chr3 27706917 27707220 -190329938 - AluY SINE Alu -7 304 1 2455 235 59 21 chr3 27707220 27707577 -190329581 + L1MD2 LINE L1 4921 5263 -883 494 106 59 0 chr3 27707579 27707664 -190329494 + L1PA16 LINE L1 6068 6157 -9 2532 105 36 0 chr3 27707681 27708071 -190329087 - L1PA7 LINE L1 -1692 4454 4051 6859 62 8 2 chr3 27708071 27709790 -190327368 + L1PA7 LINE L1 4449 6151 -3 383 126 10 2 chr3 27709835 27709912 -190327246 + L1MD2 LINE L1 5255 5335 -835 5796 239 42 22 chr3 27709922 27711574 -190325584 + L1 LINE L1 835 2453 -5033 1842 137 71 14 chr3 27711574 27711925 -190325233 - THE1C LTR MaLR -4 371 1 9553 133 10 43 chr3 27711925 27712132 -190325026 - THE1C-int LTR MaLR 0 1580 1368 1432 101 187 82 chr3 27712132 27712399 -190324759 + AluSx SINE Alu 1 295 -17 9553 133 10 43 chr3 27712399 27713822 -190323336 - THE1C-int LTR MaLR -212 1368 4 1832 167 44 19 chr3 27713825 27714191 -190322967 - THE1C LTR MaLR 0 375 1 5796 239 42 22 chr3 27714191 27714438 -190322720 + L1 LINE L1 2454 2685 -4801 3660 226 40 28 chr3 27714430 27716085 -190321073 + L1 LINE L1 2986 4670 -2895 * 1438 177 87 0 chr3 27716085 27716362 -190320796 + MSTC LTR MaLR 1 301 -127 2318 117 14 8 chr3 27716362 27716721 -190320437 + L1PA11 LINE L1 5814 6174 0 2051 196 11 13 chr3 27716923 27717372 -190319786 + L1MD2 LINE L1 5482 5929 -430 268 123 68 82 chr3 27717367 27717440 -190319718 + L1MC/D LINE L1 5822 5893 -466 * 1096 186 14 5 chr3 27717503 27717724 -190319434 - L1MD2 LINE L1 -471 5888 5666 661 248 155 93 chr3 27717746 27718082 -190319076 + HAL1 LINE L1 636 950 -1557 411 56 0 0 chr3 27718082 27718136 -190319022 + MADE1 DNA Mariner 1 54 -26 661 248 155 93 chr3 27718136 27718372 -190318786 + HAL1 LINE L1 950 1300 -1207 894 143 0 0 chr3 27718389 27718522 -190318636 + FLAM_C SINE Alu 1 133 0 2210 117 0 3 chr3 27718889 27719187 -190317971 - AluSq SINE Alu -16 297 1 210 359 111 17 chr3 27719914 27720031 -190317127 - L2 LINE L2 -5 3267 3140 2758 206 1 19 chr3 27721956 27722536 -190314622 + L1 LINE L1 5811 6379 -1186 1768 164 40 32 chr3 27722536 27722908 -190314250 + THE1C LTR MaLR 1 375 0 2758 206 1 19 chr3 27722908 27723005 -190314153 + L1 LINE L1 6379 6476 -1089 4575 107 29 21 chr3 27723027 27723781 -190313377 + L1PA16 LINE L1 5407 6166 0 274 78 20 20 chr3 27724206 27724257 -190312901 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 182 37 37 0 chr3 27724314 27724341 -190312817 + (CA)n Simple_repeat Simple_repeat 2 29 0 300 212 0 15 chr3 27724349 27724415 -190312743 + L1MC4 LINE L1 6614 6678 -1364 374 285 95 92 chr3 27725124 27725535 -190311623 + MLT1H LTR MaLR 136 547 -2 14215 151 106 76 chr3 27725743 27729022 -190308136 + L1M1 LINE L1 8 3382 -4183 1806 188 3 0 chr3 27729034 27729386 -190307772 + L1M1 LINE L1 5201 5553 -2012 3850 169 42 44 chr3 27729387 27730178 -190306980 - MER52A LTR ERV1 0 1755 967 2833 155 10 15 chr3 27730211 27730941 -190306217 + L1M1 LINE L1 6182 6905 -743 2437 150 46 17 chr3 27730957 27731371 -190305787 + MSTB LTR MaLR 1 426 0 956 173 35 0 chr3 27731371 27731568 -190305590 - MLT1A2-int LTR MaLR -909 462 259 587 128 55 0 chr3 27731558 27731667 -190305491 - MLT1A2-int LTR MaLR -1256 115 1 * 1449 231 3 6 chr3 27731667 27731987 -190305171 - MLT1A2 LTR MaLR 0 374 56 1794 185 11 0 chr3 27733208 27733495 -190303663 + AluJb SINE Alu 1 290 -22 24 32 0 0 chr3 27733495 27733526 -190303632 + AT_rich Low_complexity Low_complexity 1 31 0 186 118 0 0 chr3 27733807 27733841 -190303317 + (TATG)n Simple_repeat Simple_repeat 3 36 0 32984 100 11 27 chr3 27734682 27740926 -190296232 - L1PA7 LINE L1 -2 6152 12 553 199 59 128 chr3 27740937 27741168 -190295990 - L1MC5 LINE L1 -308 7653 7458 2346 126 25 3 chr3 27741168 27741524 -190295634 - THE1B LTR MaLR 0 364 1 553 199 59 128 chr3 27741524 27741684 -190295474 - L1MC5 LINE L1 -503 7458 7289 2247 269 62 28 chr3 27742208 27744620 -190292538 + L1MB1 LINE L1 2 2700 -3270 1028 166 43 0 chr3 27744621 27744784 -190292374 - AluSg/x SINE Alu -9 303 134 1264 223 86 18 chr3 27744784 27745330 -190291828 + L1MB1 LINE L1 2692 3274 -2696 4050 71 13 4 chr3 27745336 27745874 -190291284 - L1PA6 LINE L1 -2 6152 5610 12984 173 53 26 chr3 27745936 27750969 -190286189 + L1PB1 LINE L1 6 5263 -1604 2153 116 14 0 chr3 27750969 27751262 -190285896 + AluSx SINE Alu 1 297 -15 12984 173 53 26 chr3 27751262 27752912 -190284246 + L1PB1 LINE L1 5263 6867 0 6919 179 36 17 chr3 27752923 27753746 -190283412 + L1MB1 LINE L1 3295 4100 -1892 2016 105 11 0 chr3 27753746 27754057 -190283101 - AluY SINE Alu 0 314 1 6919 179 36 17 chr3 27754057 27754940 -190282218 + L1MB1 LINE L1 4100 4964 -1028 2009 189 53 19 chr3 27754940 27755352 -190281806 + MSTB LTR MaLR 1 426 0 6919 179 36 17 chr3 27755352 27756261 -190280897 + L1MB1 LINE L1 4964 5991 -1 237 306 139 0 chr3 27756442 27756550 -190280608 - MIR SINE MIR -56 206 84 300 276 0 13 chr3 27757334 27757410 -190279748 + (TTCA)n Simple_repeat Simple_repeat 3 77 0 198 239 0 0 chr3 27757574 27757620 -190279538 + L2 LINE L2 3262 3307 -6 417 316 90 19 chr3 27758002 27758214 -190278944 + MIR SINE MIR 32 258 -4 1027 232 80 49 chr3 27759694 27760143 -190277015 - MER4C LTR ERV1 -2 463 1 3352 111 148 124 chr3 27760400 27761772 -190275386 + pTR5 LTR ERV1 743 2606 0 1952 140 27 0 chr3 27762406 27762699 -190274459 - AluSx SINE Alu -11 301 1 232 252 155 39 chr3 27764407 27764510 -190272648 + L2 LINE L2 3199 3313 0 667 233 94 0 chr3 27764698 27764857 -190272301 + MER5B DNA MER1_type 5 178 0 263 284 101 47 chr3 27764929 27765098 -190272060 + MER5B DNA MER1_type 1 178 0 3418 64 0 11 chr3 27765101 27765552 -190271606 - L1PA7 LINE L1 0 6154 5709 982 89 34 27 chr3 27765656 27765802 -190271356 - L1PA11 LINE L1 -1 6173 6027 2051 148 3 0 chr3 27766656 27766966 -190270192 + AluSx SINE Alu 1 311 -1 385 283 63 44 chr3 27767548 27767599 -190269559 - MIR SINE MIR -55 207 158 1394 214 90 45 chr3 27767599 27767978 -190269180 - MSTD LTR MaLR 0 396 1 385 283 63 44 chr3 27767978 27768085 -190269073 - MIR SINE MIR -104 158 46 201 372 48 48 chr3 27768596 27768741 -190268417 - L2 LINE L2 -10 3262 3118 599 346 91 34 chr3 27769244 27769594 -190267564 - LTR16C LTR ERVL -2 489 120 552 373 79 41 chr3 27770603 27771527 -190265631 - L2 LINE L2 0 3272 2316 239 333 25 25 chr3 27771527 27771647 -190265511 - MLT1H LTR MaLR 0 549 430 537 220 40 10 chr3 27771808 27771934 -190265224 - MLT1H LTR MaLR -197 232 98 322 337 84 42 chr3 27772020 27772352 -190264806 - L2 LINE L2 -991 2323 1978 503 348 114 4 chr3 27772379 27772606 -190264552 - MIR SINE MIR -10 252 1 290 366 9 11 chr3 27772689 27772799 -190264359 - MIR SINE MIR -92 116 6 21 71 0 0 chr3 27773376 27773418 -190263740 + AT_rich Low_complexity Low_complexity 1 42 0 189 132 0 0 chr3 27773494 27773532 -190263626 + (A)n Simple_repeat Simple_repeat 1 38 0 1222 181 112 0 chr3 27773566 27773825 -190263333 - AluJo SINE Alu -14 288 1 24 0 0 0 chr3 27773925 27773949 -190263209 + AT_rich Low_complexity Low_complexity 1 24 0 210 328 86 0 chr3 27774442 27774500 -190262658 + L2 LINE L2 3208 3270 -43 532 356 46 9 chr3 27774586 27774805 -190262353 - MIR SINE MIR -1 261 35 24 53 0 0 chr3 27776055 27776093 -190261065 + AT_rich Low_complexity Low_complexity 1 38 0 429 276 60 22 chr3 27776157 27776291 -190260867 + L2 LINE L2 3169 3307 -6 180 345 216 7 chr3 27776619 27776767 -190260391 + MIR SINE MIR 10 188 -74 279 133 0 0 chr3 27776768 27776813 -190260345 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr3 27776826 27776850 -190260308 + AT_rich Low_complexity Low_complexity 1 24 0 1648 263 107 28 chr3 27776912 27777483 -190259675 + MLT2F LTR ERVL 1 616 -47 231 146 0 0 chr3 27777792 27777833 -190259325 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chr3 27778915 27778943 -190258215 + (TA)n Simple_repeat Simple_repeat 2 29 0 3096 171 54 0 chr3 27778944 27779482 -190257676 - MER6A DNA MER2_type 0 605 39 602 171 39 8 chr3 27779746 27779875 -190257283 - L1 LINE L1 -2192 3954 3822 2634 32 3 0 chr3 27779959 27780270 -190256888 - L1PA6 LINE L1 -234 5920 5609 6240 52 4 0 chr3 27780942 27781713 -190255445 - L1PA6 LINE L1 -1 6153 5380 456 309 195 15 chr3 27781713 27782056 -190255102 - L2 LINE L2 -1518 1796 1392 1961 129 7 3 chr3 27782062 27782371 -190254787 + L1P4 LINE L1 5351 5660 -506 558 298 20 45 chr3 27782510 27782708 -190254450 - L2 LINE L2 -19 3294 3102 24 0 0 0 chr3 27784885 27784909 -190252249 + AT_rich Low_complexity Low_complexity 1 24 0 4842 163 30 14 chr3 27784922 27785926 -190251232 + L1MB1 LINE L1 4781 5819 -349 349 36 36 0 chr3 27785926 27785981 -190251177 + (TG)n Simple_repeat Simple_repeat 1 57 0 4842 163 30 14 chr3 27785981 27786336 -190250822 + L1MB1 LINE L1 5819 6167 -1 24 0 0 0 chr3 27786348 27786372 -190250786 + AT_rich Low_complexity Low_complexity 1 24 0 2153 98 0 0 chr3 27786449 27786725 -190250433 + AluSx SINE Alu 1 276 -36 2143 125 56 19 chr3 27786826 27787185 -190249973 + L1PA16 LINE L1 5789 6160 -6 225 0 0 0 chr3 27787714 27787739 -190249419 + (CA)n Simple_repeat Simple_repeat 2 26 0 1386 274 104 10 chr3 27787902 27788315 -190248843 + MLT1G LTR MaLR 135 586 -4 1450 169 44 34 chr3 27788402 27788697 -190248461 - AluJb SINE Alu -14 298 1 512 210 178 25 chr3 27789512 27789793 -190247365 + L1MC5 LINE L1 7538 7861 -100 278 280 72 0 chr3 27790084 27790209 -190246949 + L1ME4a LINE L1 5926 6059 -62 1749 237 133 18 chr3 27791214 27791703 -190245455 + MLT1E LTR MaLR 32 576 -17 533 322 7 56 chr3 27792114 27792373 -190244785 - MIR SINE MIR -6 256 6 454 225 248 0 chr3 27792660 27792789 -190244369 + MER5A DNA MER1_type 28 188 -1 30 0 0 0 chr3 27792848 27792878 -190244280 + AT_rich Low_complexity Low_complexity 1 30 0 345 78 0 68 chr3 27793867 27793970 -190243188 + (TAA)n Simple_repeat Simple_repeat 3 98 0 200 264 97 14 chr3 27793973 27794045 -190243113 + L2 LINE L2 3236 3313 0 287 256 60 98 chr3 27794086 27794219 -190242939 + L2 LINE L2 3145 3272 0 392 336 7 15 chr3 27794548 27794685 -190242473 + MIR SINE MIR 121 256 -6 1457 323 116 8 chr3 27795036 27795805 -190241353 + L2 LINE L2 2119 2970 -344 196 235 39 0 chr3 27795919 27795970 -190241188 + L2 LINE L2 3241 3293 -20 730 177 20 41 chr3 27796620 27796767 -190240391 + AluJb SINE Alu 134 277 -35 504 93 0 0 chr3 27796776 27796851 -190240307 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 230 284 125 0 chr3 27797267 27797355 -190239803 + MIR3 SINE MIR 87 185 -23 326 343 28 33 chr3 27797498 27797711 -190239447 - L2 LINE L2 -249 3023 2812 2181 106 0 3 chr3 27797931 27798223 -190238935 - AluSc SINE Alu -18 291 1 732 152 33 2 chr3 27798334 27798467 -190238691 + L1MB8 LINE L1 5516 5650 -524 2814 133 7 0 chr3 27798467 27798889 -190238269 + MER57B LTR ERV1 1 425 -9 3761 155 44 17 chr3 27798901 27799558 -190237600 + MER57B-int LTR ERV1 1 675 -6862 3428 144 53 13 chr3 27799552 27800102 -190237056 + MER57B-int LTR ERV1 288 859 -5087 * 17309 170 60 53 chr3 27800140 27804312 -190232846 + MER57B-int LTR ERV1 3129 7329 -487 768 138 24 0 chr3 27804312 27804435 -190232723 + LTR54B LTR ERV1 3 128 -370 1570 87 121 4 chr3 27804435 27804666 -190232492 + MER57B-int LTR ERV1 7272 7529 -8 2433 121 44 37 chr3 27804674 27805105 -190232053 + MER57B LTR ERV1 1 434 0 304 154 0 0 chr3 27805105 27805150 -190232008 + L1MB8 LINE L1 5644 5691 -551 2098 149 15 27 chr3 27805151 27805553 -190231605 + L1MB8 LINE L1 5782 6178 0 2473 53 0 3 chr3 27805977 27806279 -190230879 + AluY SINE Alu 1 301 -10 192 179 0 0 chr3 27806323 27806362 -190230796 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr3 27806491 27806518 -190230640 + (GCCTG)n Simple_repeat Simple_repeat 4 30 0 478 311 49 0 chr3 27807579 27807743 -190229415 - MIR SINE MIR 0 262 91 194 250 28 14 chr3 27807935 27808007 -190229151 + MIR SINE MIR 188 260 -2 * 327 260 115 0 chr3 27807996 27808092 -190229066 - MIR SINE MIR -99 163 57 202 258 194 0 chr3 27809058 27809151 -190228007 + MIR SINE MIR 92 202 -60 204 299 75 15 chr3 27809211 27809278 -190227880 + L2 LINE L2 3035 3105 -167 651 238 62 66 chr3 27809347 27809743 -190227415 + MLT2B3 LTR ERVL 71 322 -169 1314 276 32 29 chr3 27810396 27810806 -190226352 + LTR16A LTR ERVL 40 450 0 189 246 0 77 chr3 27810810 27810875 -190226283 + L2 LINE L2 3203 3262 -10 353 226 48 0 chr3 27811235 27811319 -190225839 + MLT2E LTR ERVL 38 125 -503 379 218 0 170 chr3 27811975 27812008 -190225150 + L2 LINE L2 3124 3161 -152 1440 145 76 0 chr3 27812008 27812298 -190224860 + L1MA8 LINE L1 5976 6287 -4 379 218 0 170 chr3 27812298 27812493 -190224665 + L2 LINE L2 3161 3313 0 440 293 34 0 chr3 27812860 27813068 -190224090 - L1M4 LINE L1 -1524 4622 4408 1403 248 75 100 chr3 27813431 27814033 -190223125 + MLT1G LTR MaLR 9 590 0 4453 98 8 22 chr3 27815309 27815952 -190221206 + MER51A LTR ERV1 1 634 0 279 284 140 25 chr3 27816075 27816277 -190220881 + MLT1H LTR MaLR 1 300 -249 1748 188 0 0 chr3 27816338 27816620 -190220538 + AluJo SINE Alu 1 282 -30 221 306 94 12 chr3 27816645 27816730 -190220428 + MIR SINE MIR 100 191 -71 247 286 174 10 chr3 27816756 27816854 -190220304 - L2 LINE L2 -20 3293 3180 981 199 10 0 chr3 27817240 27817441 -190219717 + MER3 DNA MER1_type 6 208 -1 219 36 0 0 chr3 27818343 27818371 -190218787 + (CAG)n Simple_repeat Simple_repeat 1 28 0 338 381 12 12 chr3 27820815 27820975 -190216183 + MIR3 SINE MIR 29 188 -20 1462 311 180 22 chr3 27821376 27822503 -190214655 - L2 LINE L2 -229 3084 1782 21 0 0 0 chr3 27822509 27822530 -190214628 + AT_rich Low_complexity Low_complexity 1 21 0 865 289 142 4 chr3 27822621 27823078 -190214080 - L1MC4a LINE L1 -1815 5993 5474 573 191 128 0 chr3 27823074 27823215 -190213943 - L1PA16 LINE L1 -3 6163 6005 * 239 321 57 30 chr3 27823434 27823699 -190213459 - L1M2 LINE L1 -5782 1067 796 358 297 150 60 chr3 27823766 27824099 -190213059 - L1M2 LINE L1 -6018 831 469 546 287 99 18 chr3 27824188 27824571 -190212587 - L1PA12 LINE L1 -7166 415 2 1428 173 69 36 chr3 27824841 27825118 -190212040 + AluJo SINE Alu 6 291 -21 22 35 0 0 chr3 27825131 27825160 -190211998 + AT_rich Low_complexity Low_complexity 1 29 0 348 258 0 0 chr3 27825545 27825634 -190211524 + L1MC/D LINE L1 5688 5776 -583 612 281 68 29 chr3 27825827 27826211 -190210947 - L1MEc LINE L1 -3905 2491 2093 757 148 0 0 chr3 27826253 27826375 -190210783 - L1 LINE L1 -1939 4207 4086 10466 24 8 0 chr3 27826376 27828108 -190209050 + L1PA4 LINE L1 4091 5832 -323 567 200 179 7 chr3 27828211 27828351 -190208807 + MER5A DNA MER1_type 26 189 0 446 246 35 9 chr3 27828641 27828755 -190208403 + MIR SINE MIR 92 208 -54 2412 136 47 2 chr3 27829007 27829413 -190207745 + MSTA LTR MaLR 3 426 -2 275 309 57 0 chr3 27829518 27829641 -190207517 - L2 LINE L2 -1037 2277 2148 21 57 0 0 chr3 27830384 27830419 -190206739 + AT_rich Low_complexity Low_complexity 1 35 0 230 341 155 31 chr3 27830626 27831040 -190206118 + L2 LINE L2 2153 2617 -697 571 256 12 12 chr3 27831070 27831230 -190205928 + MER69A DNA AcHobo 3 162 -15 236 324 28 0 chr3 27831699 27831770 -190205388 + MER58A DNA MER1_type 1 73 -34 860 187 23 6 chr3 27831791 27831962 -190205196 + MER58A DNA MER1_type 51 224 0 653 247 19 39 chr3 27832664 27832923 -190204235 - L1MC/D LINE L1 -2300 5508 5255 16420 40 2 0 chr3 27834700 27837468 -190199690 + L1PA4 LINE L1 3382 6153 -2 848 204 240 11 chr3 27838091 27838366 -190198792 - MER58B DNA MER1_type -3 338 1 687 138 9 0 chr3 27838521 27838630 -190198528 - L1PB3 LINE L1 -1 6153 6044 580 103 11 0 chr3 27838630 27838717 -190198441 - MSTA LTR MaLR -335 93 6 2169 267 46 30 chr3 27838742 27839614 -190197544 - L1PBa LINE L1 -5801 1062 177 2148 125 16 0 chr3 27840529 27840833 -190196325 + AluSq SINE Alu 1 309 -4 21 36 0 0 chr3 27840978 27841006 -190196152 + AT_rich Low_complexity Low_complexity 1 28 0 688 149 0 57 chr3 27841629 27841747 -190195411 + L1MA3 LINE L1 6173 6296 -9 2675 96 3 0 chr3 27841747 27842101 -190195057 + THE1A LTR MaLR 1 355 0 11308 93 13 11 chr3 27842101 27842539 -190194619 + THE1A-int LTR MaLR 1 437 -1143 2283 88 0 0 chr3 27842539 27842886 -190194272 + AluY SINE Alu 1 347 0 11308 93 13 11 chr3 27842886 27844023 -190193135 + THE1A-int LTR MaLR 437 1580 0 2671 96 6 0 chr3 27844023 27844376 -190192782 + THE1A LTR MaLR 1 355 0 688 149 0 57 chr3 27844376 27844396 -190192762 + L1MA3 LINE L1 6293 6305 0 755 54 0 0 chr3 27844465 27844557 -190192601 - L1PA5 LINE L1 -8 6146 6055 7564 34 3 2 chr3 27844557 27845545 -190191613 + L1P LINE L1 2794 3782 -2364 186 133 0 0 chr3 27846000 27846030 -190191128 + (T)n Simple_repeat Simple_repeat 1 30 0 2905 234 47 15 chr3 27846190 27847138 -190190020 - L1ME1 LINE L1 -4 6162 5191 583 268 153 0 chr3 27847333 27847490 -190189668 - MER5A DNA MER1_type 0 189 9 499 150 0 0 chr3 27847736 27847816 -190189342 - L1MC1 LINE L1 -8 6325 6246 5200 132 32 20 chr3 27848214 27848272 -190188886 + L1MA4 LINE L1 5314 5370 -930 1629 169 16 36 chr3 27848272 27848579 -190188579 + AluJb SINE Alu 1 301 -11 5200 132 32 20 chr3 27848579 27849484 -190187674 + L1MA4 LINE L1 5370 6289 -11 26 0 0 0 chr3 27849484 27849510 -190187648 + AT_rich Low_complexity Low_complexity 1 26 0 309 230 22 19 chr3 27849805 27849914 -190187244 + MLT1I LTR MaLR 68 138 -271 202 390 89 12 chr3 27850791 27850960 -190186198 - L2 LINE L2 -29 3243 3062 251 314 160 26 chr3 27851039 27851233 -190185925 + MIR SINE MIR 40 259 -3 1571 203 0 17 chr3 27851691 27851987 -190185171 - AluJo SINE Alu -21 291 1 514 278 116 20 chr3 27853157 27853630 -190183528 + L1MEd LINE L1 1036 1493 -4831 826 127 0 0 chr3 27853665 27853783 -190183375 + FLAM_C SINE Alu 1 118 -15 33 0 0 0 chr3 27853783 27853816 -190183342 + AT_rich Low_complexity Low_complexity 1 33 0 1122 262 125 5 chr3 27853820 27854244 -190182914 + L1MC4a LINE L1 5463 5937 -1871 320 298 53 0 chr3 27854343 27854457 -190182701 + L1MC4a LINE L1 6046 6165 -1643 868 221 172 48 chr3 27854457 27855037 -190182121 + L1MC5 LINE L1 6840 7491 -470 745 160 6 6 chr3 27855039 27855208 -190181950 + GA-rich Low_complexity Low_complexity 4 172 0 497 221 104 59 chr3 27855400 27855689 -190181469 + L1MC5 LINE L1 7612 7913 -48 335 203 169 45 chr3 27855759 27855983 -190181175 + L1MEd LINE L1 1704 1893 -4533 210 209 45 15 chr3 27856007 27856074 -190181084 + (TAAA)n Simple_repeat Simple_repeat 2 70 0 226 0 0 0 chr3 27856078 27856103 -190181055 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 1449 169 42 0 chr3 27856103 27856340 -190180818 - AluJb SINE Alu -29 283 37 25 31 0 0 chr3 27856350 27856382 -190180776 + AT_rich Low_complexity Low_complexity 1 32 0 2979 223 90 22 chr3 27856546 27857193 -190179965 + L1MEd LINE L1 2342 2943 -3483 1645 212 21 16 chr3 27857193 27857565 -190179593 + MLT1A2 LTR MaLR 1 374 0 2979 223 90 22 chr3 27857565 27858222 -190178936 + L1MEd LINE L1 2943 3691 -2735 524 276 99 0 chr3 27858235 27858387 -190178771 + MLT1G1 LTR MaLR 429 595 0 808 272 80 23 chr3 27858514 27858655 -190178503 + L1M4 LINE L1 2801 2933 -3213 1910 123 50 41 chr3 27858655 27858995 -190178163 - MER61A LTR ERV1 0 343 1 808 272 80 23 chr3 27858995 27859537 -190177621 + L1M4 LINE L1 2933 3523 -2623 6589 176 9 40 chr3 27859537 27861543 -190175615 + L1PA16 LINE L1 5 1840 -5009 6199 177 56 16 chr3 27861545 27863201 -190173957 + L1PA16 LINE L1 4342 6108 -761 2017 135 3 3 chr3 27863201 27863504 -190173654 + AluSx SINE Alu 1 303 -9 6199 177 56 16 chr3 27863504 27864299 -190172859 + L1PA16 LINE L1 6108 6869 0 750 249 34 55 chr3 27864298 27864716 -190172442 + L1M4 LINE L1 3510 3918 -2228 * 1640 222 65 34 chr3 27864728 27865206 -190171952 + MLT1D LTR MaLR 1 493 -12 1301 210 41 4 chr3 27865341 27865733 -190171425 - LTR48 LTR ERV1 -48 739 138 263 167 0 0 chr3 27865779 27865821 -190171337 - LTR48B LTR ERV1 -602 42 1 322 241 68 30 chr3 27865849 27865982 -190171176 + L1M4 LINE L1 4032 4169 -1977 412 206 64 43 chr3 27866100 27866241 -190170917 + L1ME3A LINE L1 6020 6163 -7 447 306 155 18 chr3 27866279 27866498 -190170660 + MIR SINE MIR 11 259 -3 342 293 48 52 chr3 27866684 27866947 -190170211 + L1MEd LINE L1 919 1182 -1308 1540 201 3 7 chr3 27866947 27867235 -190169923 - AluJo SINE Alu -25 287 1 342 293 48 52 chr3 27867235 27867467 -190169691 + L1MEd LINE L1 1182 1414 -1076 645 244 91 35 chr3 27867467 27867664 -190169494 - MER63A DNA MER1_type -2 208 1 342 293 48 52 chr3 27867664 27867831 -190169327 + L1MEd LINE L1 1414 1649 -841 1664 158 50 7 chr3 27868364 27868792 -190168366 + MER61D LTR ERV1 1 501 0 2144 112 3 0 chr3 27869305 27869591 -190167567 - AluSx SINE Alu -15 297 11 463 138 32 81 chr3 27869767 27869890 -190167268 - MER94 DNA DNA -16 118 2 400 348 58 5 chr3 27869949 27870185 -190166973 - MIR SINE MIR -15 247 2 630 240 14 1 chr3 27870348 27870497 -190166661 + MLT1H LTR MaLR 17 214 -335 2225 104 3 3 chr3 27870498 27870795 -190166363 + AluSg SINE Alu 1 297 -13 961 191 40 35 chr3 27870850 27871078 -190166080 + AluJb SINE Alu 85 313 0 575 243 49 25 chr3 27871207 27871414 -190165744 + MLT1H LTR MaLR 344 549 0 772 161 0 0 chr3 27871728 27871846 -190165312 + FLAM_C SINE Alu 1 118 -15 39 22 0 0 chr3 27871846 27871892 -190165266 + AT_rich Low_complexity Low_complexity 1 46 0 198 171 0 0 chr3 27871936 27871977 -190165181 + (TG)n Simple_repeat Simple_repeat 2 42 0 249 235 0 0 chr3 27872407 27872458 -190164700 + L3b LINE CR1 1108 1158 -425 261 293 58 35 chr3 27872976 27873186 -190163972 - MIR3 SINE MIR -7 255 6 656 302 72 0 chr3 27873328 27873563 -190163595 + MIR SINE MIR 11 262 0 526 182 35 98 chr3 27873608 27873811 -190163347 + L1MC5 LINE L1 7724 7913 -48 1864 160 7 3 chr3 27875211 27875505 -190161653 + AluJb SINE Alu 1 295 -17 2047 118 0 56 chr3 27875723 27876046 -190161112 + AluSg SINE Alu 1 305 -5 872 198 53 135 chr3 27876479 27876878 -190160280 + MLT1A2 LTR MaLR 12 369 -5 221 275 43 29 chr3 27876901 27876970 -190160188 + L2 LINE L2 3200 3269 -3 1997 238 30 5 chr3 27877565 27878124 -190159034 + L1MC4a LINE L1 7189 7761 -47 2065 141 13 107 chr3 27878139 27878316 -190158842 - L1MA9 LINE L1 -30 6282 6090 1762 158 38 0 chr3 27878316 27878607 -190158551 + AluJb SINE Alu 1 302 -10 2065 141 13 107 chr3 27878607 27878953 -190158205 - L1MA9 LINE L1 -222 6090 5808 1978 214 26 15 chr3 27878951 27879532 -190157626 - L1M2c LINE L1 -4653 2384 1802 * 400 289 45 26 chr3 27880143 27880377 -190156781 - L1M2c LINE L1 -6024 1013 7 26 0 0 0 chr3 27880423 27880449 -190156709 + AT_rich Low_complexity Low_complexity 1 26 0 223 357 94 62 chr3 27880572 27880796 -190156362 + MIR SINE MIR 20 250 -12 32 43 0 0 chr3 27881434 27881480 -190155678 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr3 27882465 27882487 -190154671 + AT_rich Low_complexity Low_complexity 1 22 0 230 191 0 0 chr3 27882524 27882566 -190154592 + 5S rRNA rRNA 1 42 -79 1074 213 137 15 chr3 27882711 27882928 -190154230 - L1ME3 LINE L1 -79 6083 5894 2301 97 3 0 chr3 27882928 27883226 -190153932 - AluSg SINE Alu -11 299 1 1074 213 137 15 chr3 27883226 27883351 -190153807 - L1ME3 LINE L1 -268 5894 5699 2135 99 3 3 chr3 27883635 27883927 -190153231 + AluSp SINE Alu 1 292 -21 225 232 32 21 chr3 27883927 27884022 -190153136 + L1MC5 LINE L1 7822 7917 -44 1395 171 96 11 chr3 27884280 27884561 -190152597 + AluSx SINE Alu 1 305 -7 2831 142 50 21 chr3 27884766 27885289 -190151869 - MER21A LTR ERV1 -19 912 375 369 172 39 8 chr3 27885461 27885589 -190151569 + (TA)n Simple_repeat Simple_repeat 1 132 0 451 229 47 41 chr3 27885749 27885919 -190151239 - MER112 DNA MER1_type -83 177 7 730 109 0 70 chr3 27886547 27886675 -190150483 - L1PA13 LINE L1 -11 6152 6034 1243 206 76 7 chr3 27886789 27887196 -190149962 + Charlie4a DNA MER1_type 60 494 -14 1695 178 0 14 chr3 27887440 27887762 -190149396 + AluJb SINE Alu 1 318 0 995 117 9 61 chr3 27887811 27887911 -190149247 - L1MA4 LINE L1 0 6300 6215 2273 115 0 0 chr3 27887911 27888207 -190148951 + AluSx SINE Alu 1 296 -16 995 117 9 61 chr3 27888207 27888319 -190148839 - L1MA4 LINE L1 -85 6215 6099 1713 139 35 0 chr3 27888378 27888688 -190148470 - L1MA4 LINE L1 -191 6109 5789 * 12262 166 22 28 chr3 27888685 27891381 -190145777 - L1MA4 LINE L1 -838 5308 2628 281 344 65 47 chr3 27891903 27892264 -190144894 + L2 LINE L2 2660 3025 -247 10872 171 18 69 chr3 27892444 27895662 -190141496 + L1PA12 LINE L1 1400 4779 -2805 520 146 12 0 chr3 27895662 27895744 -190141414 + AluSc SINE Alu 44 126 -183 10872 171 18 69 chr3 27895744 27895807 -190141351 + L1PA12 LINE L1 4779 4844 -2740 2301 96 7 7 chr3 27895807 27896110 -190141048 + AluSp SINE Alu 1 303 -10 1010 107 0 0 chr3 27896110 27896241 -190140917 + AluSc SINE Alu 132 262 -47 180 0 0 0 chr3 27896241 27896261 -190140897 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 10872 171 18 69 chr3 27896261 27896747 -190140411 + L1PA12 LINE L1 4841 5143 -2441 1269 185 24 31 chr3 27896777 27897069 -190140089 + SVA Other Other 432 721 -665 1200 148 5 0 chr3 27897178 27897394 -190139764 + L1PA12 LINE L1 5143 5359 -2225 247 191 0 0 chr3 27897391 27897438 -190139720 + L1MA5A LINE L1 5722 5768 -529 * 11384 99 12 1 chr3 27897493 27899939 -190137219 - L1PA7 LINE L1 0 6469 3996 4651 83 0 3 chr3 27899939 27900547 -190136611 - L1PA7 LINE L1 0 6154 5542 16077 111 41 19 chr3 27900548 27903672 -190133486 - L1PA7 LINE L1 -2456 4005 751 692 111 0 34 chr3 27903702 27903819 -190133339 + L1MA5A LINE L1 5782 5894 -403 1529 224 14 0 chr3 27903848 27904129 -190133029 + AluJo SINE Alu 1 285 -27 294 73 0 0 chr3 27904146 27904187 -190132971 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2137 150 28 2 chr3 27904190 27904589 -190132569 + L1MA5A LINE L1 5886 6294 -3 224 283 11 0 chr3 27904590 27904682 -190132476 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 6022 123 71 9 chr3 27904688 27904789 -190132369 + L1MC3 LINE L1 1854 1947 -6554 1972 128 31 7 chr3 27904789 27905078 -190132080 + AluSx SINE Alu 1 296 -16 6022 123 71 9 chr3 27905078 27906225 -190130933 + L1MC3 LINE L1 1947 6571 -1930 23 33 0 0 chr3 27906270 27906300 -190130858 + AT_rich Low_complexity Low_complexity 1 30 0 12856 184 23 28 chr3 27906300 27909582 -190127576 + L1PB2 LINE L1 2362 5622 -529 7884 42 0 1 chr3 27909582 27911207 -190125951 + L1PA5 LINE L1 4527 6150 -4 12856 184 23 28 chr3 27911207 27911620 -190125538 + L1PB2 LINE L1 5622 6035 -116 * 43401 36 21 1 chr3 27911617 27917647 -190119511 + L1PA2 LINE L1 1 6155 0 947 83 15 8 chr3 27917647 27917779 -190119379 + L1PB2 LINE L1 6018 6151 0 248 301 96 64 chr3 27917853 27918198 -190118960 - L2 LINE L2 -1709 1605 1250 28 0 0 0 chr3 27918402 27918430 -190118728 + AT_rich Low_complexity Low_complexity 1 28 0 873 141 147 0 chr3 27918432 27918616 -190118542 + L1MC3 LINE L1 7575 7785 0 2791 96 6 0 chr3 27918710 27919063 -190118095 - THE1A LTR MaLR 0 355 1 11998 80 6 16 chr3 27919063 27920097 -190117061 - THE1A-int LTR MaLR 0 1580 566 5483 40 2 2 chr3 27920097 27920744 -190116414 + L1PA5 LINE L1 5515 6161 0 11998 80 6 16 chr3 27920744 27921301 -190115857 - THE1A-int LTR MaLR -1014 566 5 3254 69 64 7 chr3 27921304 27921345 -190115813 - MLT2A1 LTR ERVL 0 444 407 498 33 0 0 chr3 27921345 27921405 -190115753 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 3254 69 64 7 chr3 27921405 27921783 -190115375 - MLT2A1 LTR ERVL -37 407 1 597 222 176 0 chr3 27921840 27921993 -190115165 + MER5A DNA MER1_type 9 188 -1 228 35 0 0 chr3 27923612 27923641 -190113517 + (TGGA)n Simple_repeat Simple_repeat 3 31 0 2212 286 162 17 chr3 27923841 27924799 -190112359 + L2 LINE L2 634 1806 -1508 1851 149 0 3 chr3 27924799 27925081 -190112077 - AluSx SINE Alu -31 281 1 2212 286 162 17 chr3 27925081 27925329 -190111829 + L2 LINE L2 1806 2016 -1298 188 200 0 0 chr3 27925329 27925364 -190111794 + L2 LINE L2 3277 3311 -2 202 235 20 0 chr3 27925562 27925613 -190111545 - L2 LINE L2 -1 3312 3261 269 306 59 48 chr3 27925929 27926115 -190111043 - L2 LINE L2 -411 2903 2716 2541 62 0 3 chr3 27926417 27926725 -190110433 - AluY SINE Alu -4 307 1 3727 225 112 13 chr3 27926729 27928123 -190109035 + L1ME1 LINE L1 4631 6160 -6 540 225 70 77 chr3 27928162 27928397 -190108761 + L1M4 LINE L1 4394 4632 -1514 27381 83 42 48 chr3 27928439 27932755 -190104403 - HERV17 LTR ERV1 -4340 4286 1 3666 53 47 53 chr3 27932755 27933283 -190103875 - LTR17 LTR ERV1 0 780 256 1994 126 17 3 chr3 27933774 27934067 -190103091 + AluSx SINE Alu 1 297 -15 2140 99 28 0 chr3 27935522 27935805 -190101353 + AluSg SINE Alu 4 294 -16 249 241 0 17 chr3 27935888 27935946 -190101212 - MLT1K LTR MaLR -17 571 515 234 239 0 0 chr3 27936562 27936608 -190100550 + (TG)n Simple_repeat Simple_repeat 2 47 0 2082 110 0 7 chr3 27936869 27937181 -190099977 - AluSx SINE Alu 0 323 14 453 19 0 0 chr3 27938659 27938713 -190098445 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 907 178 153 45 chr3 27939416 27939632 -190097526 + MER33 DNA MER1_type 5 261 -2324 2146 146 0 0 chr3 27939632 27939941 -190097217 - AluJo SINE Alu -3 309 1 907 178 153 45 chr3 27939941 27940011 -190097147 + MER33 DNA MER1_type 261 322 -2 2899 152 29 0 chr3 27940191 27940645 -190096513 + MLT1C LTR MaLR 1 467 0 22 0 0 0 chr3 27941554 27941576 -190095582 + AT_rich Low_complexity Low_complexity 1 22 0 2295 107 0 0 chr3 27941580 27941878 -190095280 + AluSq SINE Alu 1 298 -15 252 206 43 76 chr3 27942395 27942487 -190094671 - Charlie8 DNA MER1_type -2208 209 121 619 165 10 0 chr3 27943103 27943200 -190093958 + AluJ/FLAM SINE Alu 2 99 -213 1066 90 0 7 chr3 27943200 27943344 -190093814 + AluJo/FRAM SINE Alu 167 309 -3 2024 132 7 13 chr3 27943739 27944049 -190093109 + AluSx SINE Alu 1 308 -4 246 156 0 0 chr3 27944119 27944164 -190092994 + (TA)n Simple_repeat Simple_repeat 1 45 0 1315 126 117 0 chr3 27944190 27944396 -190092762 + MER30 DNA MER1_type 1 230 0 23 54 0 0 chr3 27944784 27944821 -190092337 + AT_rich Low_complexity Low_complexity 1 37 0 770 162 0 73 chr3 27944886 27945022 -190092136 + FLAM_C SINE Alu 2 127 -16 37 0 0 0 chr3 27945022 27945059 -190092099 + AT_rich Low_complexity Low_complexity 1 37 0 1162 243 55 80 chr3 27945566 27946006 -190091152 + HERVL68 LTR ERVL 142 570 -4960 1209 253 16 30 chr3 27946057 27946361 -190090797 + HERVL68 LTR ERVL 567 866 -4664 340 70 0 0 chr3 27946390 27946433 -190090725 + AluSp SINE Alu 1 43 -259 1579 91 10 0 chr3 27946433 27946642 -190090516 + AluSp SINE Alu 87 297 -16 435 253 171 67 chr3 27947021 27947290 -190089868 + HERVL68 LTR ERVL 1313 1609 -3921 6681 237 65 21 chr3 27947291 27947724 -190089434 + HERVL68 LTR ERVL 2522 2935 -2595 1588 169 48 7 chr3 27947724 27947996 -190089162 - AluJo SINE Alu -29 283 1 6681 237 65 21 chr3 27947996 27949332 -190087826 + HERVL68 LTR ERVL 2935 4368 -1162 842 191 0 7 chr3 27949349 27949496 -190087662 + FRAM SINE Alu 1 146 -30 336 24 0 0 chr3 27949496 27949537 -190087621 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 473 218 7 106 chr3 27949537 27949593 -190087565 - HERVL40 LTR ERVL -982 4548 4488 2100 118 38 0 chr3 27949593 27949881 -190087277 - AluSx SINE Alu -13 299 1 473 218 7 106 chr3 27949881 27949966 -190087192 - HERVL40 LTR ERVL -1042 4488 4421 790 239 90 106 chr3 27949968 27950269 -190086889 + HERVL68 LTR ERVL 2047 4659 -695 324 225 45 0 chr3 27950432 27950521 -190086637 + HERVL68 LTR ERVL 2455 2547 -490 588 257 69 30 chr3 27950796 27950998 -190086160 + MER63A DNA MER1_type 1 210 0 2222 88 18 0 chr3 27951347 27951631 -190085527 + AluSq SINE Alu 1 289 -24 407 171 21 7 chr3 27951631 27951771 -190085387 + (TA)n Simple_repeat Simple_repeat 1 142 0 2446 41 3 3 chr3 27951840 27952135 -190085023 + AluY SINE Alu 1 295 -16 2377 88 3 0 chr3 27952546 27952851 -190084307 + AluSc SINE Alu 1 306 -3 846 207 62 2 chr3 27952938 27953165 -190083993 + AluJb SINE Alu 3 294 -18 * 1390 179 4 4 chr3 27953164 27953398 -190083760 + AluJo SINE Alu 68 301 -11 2171 115 0 0 chr3 27953401 27953731 -190083427 + AluSq SINE Alu 1 330 0 1767 116 40 0 chr3 27953750 27954000 -190083158 + AluSx SINE Alu 41 300 -12 646 229 42 24 chr3 27955004 27955170 -190081988 + L1ME2 LINE L1 5995 6163 -1 301 228 53 18 chr3 27955284 27955398 -190081760 + L1MC4 LINE L1 7924 8041 -1 263 337 66 39 chr3 27955439 27955620 -190081538 + L2 LINE L2 2562 2747 -567 1892 134 17 0 chr3 27955724 27956016 -190081142 - AluSx SINE Alu -15 297 1 2598 51 0 6 chr3 27956181 27956494 -190080664 - AluY SINE Alu 0 311 1 840 167 75 6 chr3 27957666 27957840 -190079318 - MER5A DNA MER1_type 0 189 4 1215 204 0 9 chr3 27957852 27958077 -190079081 - MER58A DNA MER1_type -1 223 1 218 271 167 0 chr3 27959030 27959126 -190078032 - L2 LINE L2 -4 3309 3198 358 290 0 28 chr3 27959428 27959535 -190077623 - MER5A DNA MER1_type -85 104 1 694 206 144 6 chr3 27959729 27959889 -190077269 - MER5A DNA MER1_type 0 189 8 2039 148 0 0 chr3 27961243 27961541 -190075617 + AluJb SINE Alu 1 298 -14 765 200 0 14 chr3 27961584 27961729 -190075429 + FLAM_C SINE Alu 1 143 0 298 288 90 61 chr3 27961793 27962071 -190075087 + L1ME LINE L1 5379 5664 -457 2066 134 7 0 chr3 27962101 27962393 -190074765 + AluSx SINE Alu 3 296 -16 21 36 0 0 chr3 27962803 27962831 -190074327 + AT_rich Low_complexity Low_complexity 1 28 0 2342 87 3 3 chr3 27963119 27963417 -190073741 + AluSq SINE Alu 1 298 -15 1722 194 46 83 chr3 27963623 27964251 -190072907 - L1 LINE L1 -1742 5823 5219 * 16195 153 19 81 chr3 27964248 27965154 -190072004 - L1 LINE L1 -4194 3371 2411 742 168 0 0 chr3 27965154 27965261 -190071897 - FLAM_C SINE Alu -35 108 2 16195 153 19 81 chr3 27965261 27965503 -190071655 - L1 LINE L1 -5154 2411 2156 2117 136 13 0 chr3 27965503 27965811 -190071347 - AluSx SINE Alu 0 312 1 16195 153 19 81 chr3 27965811 27968135 -190069023 - L1 LINE L1 -5409 2156 12 25 31 0 0 chr3 27968231 27968263 -190068895 + AT_rich Low_complexity Low_complexity 1 32 0 2188 99 3 0 chr3 27968428 27968840 -190068318 - AluSq SINE Alu 0 413 1 448 284 158 69 chr3 27968992 27969309 -190067849 - L1ME LINE L1 -393 5728 5384 4364 174 40 25 chr3 27969772 27970748 -190066410 - L1 LINE L1 -874 5272 4279 2028 135 0 26 chr3 27970748 27971052 -190066106 - AluSx SINE Alu -16 296 1 4364 174 40 25 chr3 27971052 27971106 -190066052 - L1 LINE L1 -1867 4279 4227 674 222 34 28 chr3 27971821 27971997 -190065161 - AluJo SINE Alu -12 300 124 272 212 24 24 chr3 27972150 27972235 -190064923 + Charlie8 DNA MER1_type 96 180 -2237 961 234 117 81 chr3 27972273 27972585 -190064573 + MLT1D LTR MaLR 20 356 -149 806 154 0 22 chr3 27972585 27972721 -190064437 + FLAM_C SINE Alu 1 133 0 961 234 117 81 chr3 27972721 27972877 -190064281 + MLT1D LTR MaLR 356 505 0 773 256 33 47 chr3 27973068 27973283 -190063875 - MIR SINE MIR -38 224 13 27 29 0 0 chr3 27973496 27973530 -190063628 + AT_rich Low_complexity Low_complexity 1 34 0 30 0 0 0 chr3 27973584 27973614 -190063544 + AT_rich Low_complexity Low_complexity 1 30 0 2267 109 3 0 chr3 27973891 27974193 -190062965 - AluSx SINE Alu -9 303 1 2072 127 46 8 chr3 27974375 27974769 -190062389 + L1 LINE L1 4528 4936 -1210 1440 151 78 20 chr3 27974772 27975017 -190062141 - AluJo SINE Alu -51 261 3 191 35 0 35 chr3 27975326 27975355 -190061803 + (TAA)n Simple_repeat Simple_repeat 1 28 0 433 289 181 10 chr3 27975359 27975563 -190061595 - MIR SINE MIR -21 241 3 1692 186 10 7 chr3 27975598 27975889 -190061269 + AluJo SINE Alu 1 292 -20 23 0 0 0 chr3 27975889 27975912 -190061246 + AT_rich Low_complexity Low_complexity 1 23 0 984 120 0 0 chr3 27976428 27976561 -190060597 + AluSq/x SINE Alu 1 133 -179 1454 117 0 28 chr3 27976565 27976778 -190060380 + AluSg/x SINE Alu 83 289 -21 2187 94 3 10 chr3 27977023 27977313 -190059845 + AluSx SINE Alu 1 290 -22 183 42 0 0 chr3 27977313 27977337 -190059821 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 702 177 15 8 chr3 27977879 27978009 -190059149 + AluJb SINE Alu 1 131 -181 23 33 0 0 chr3 27978009 27978039 -190059119 + AT_rich Low_complexity Low_complexity 1 30 0 2080 122 3 16 chr3 27979484 27979796 -190057362 + AluSx SINE Alu 2 309 -3 2053 117 3 31 chr3 27979979 27980296 -190056862 - AluSq SINE Alu -5 308 1 627 242 0 0 chr3 27981726 27981858 -190055300 + FRAM SINE Alu 38 169 -7 2278 113 0 0 chr3 27982673 27982973 -190054185 + AluSq SINE Alu 2 301 -12 437 240 0 0 chr3 27982976 27983072 -190054086 + MER34 LTR ERV1 1 96 -446 445 328 109 46 chr3 27983082 27983384 -190053774 + HAL1 LINE L1 305 625 -1882 769 233 127 21 chr3 27983427 27983663 -190053495 + MIR SINE MIR 2 262 0 445 292 135 65 chr3 27983672 27983774 -190053384 + HAL1 LINE L1 659 752 -1755 2092 116 7 7 chr3 27983774 27984076 -190053082 + AluSq SINE Alu 1 302 -11 445 292 135 65 chr3 27984076 27984145 -190053013 + HAL1 LINE L1 752 815 -1692 1547 185 0 56 chr3 27984145 27984464 -190052694 - AluJb SINE Alu -11 301 1 445 292 135 65 chr3 27984464 27984705 -190052453 + HAL1 LINE L1 815 1101 -1406 731 150 8 8 chr3 27984743 27984863 -190052295 + FLAM_C SINE Alu 6 125 -18 1669 225 61 82 chr3 27984877 27984990 -190052168 - L1MC4 LINE L1 -826 7216 7102 2261 116 0 0 chr3 27984990 27985300 -190051858 - AluSg SINE Alu 0 310 1 1669 225 61 82 chr3 27985300 27985590 -190051568 - L1MC4 LINE L1 -940 7102 6807 612 37 0 0 chr3 27985590 27985672 -190051486 + L1PA3 LINE L1 6073 6154 -1 1669 225 61 82 chr3 27985672 27985752 -190051406 - L1MC4 LINE L1 -1235 6807 6727 2353 67 10 0 chr3 27985752 27986049 -190051109 + AluY SINE Alu 1 300 -11 1669 225 61 82 chr3 27986049 27986333 -190050825 - L1MC4 LINE L1 -1315 6727 6463 2404 61 10 0 chr3 27987152 27987446 -190049712 - AluY SINE Alu -14 297 1 2303 75 14 0 chr3 27987449 27987744 -190049414 - AluSp SINE Alu -12 301 3 487 209 0 0 chr3 27987749 27987835 -190049323 - AluJb SINE Alu -19 293 208 213 159 65 47 chr3 27988685 27988792 -190048366 + (TATAA)n Simple_repeat Simple_repeat 2 110 0 338 313 106 5 chr3 27988825 27989042 -190048116 + L1M4 LINE L1 3622 3860 -2286 2018 120 24 0 chr3 27989240 27989531 -190047627 - AluSx SINE Alu -14 298 1 924 146 0 0 chr3 27989994 27990124 -190047034 - FLAM_C SINE Alu -2 131 2 2182 102 3 16 chr3 27990212 27990517 -190046641 + AluSg SINE Alu 4 304 -6 572 299 83 21 chr3 27990669 27990910 -190046248 + MIR SINE MIR 3 258 -4 26 64 0 0 chr3 27991012 27991059 -190046099 + AT_rich Low_complexity Low_complexity 1 47 0 1547 184 23 40 chr3 27991392 27991636 -190045522 - AluJo SINE Alu -13 299 59 1752 131 6 92 chr3 27991636 27991971 -190045187 + AluSq SINE Alu 2 307 -6 1547 184 23 40 chr3 27991971 27992030 -190045128 - AluJo SINE Alu -253 59 1 365 294 55 0 chr3 27992539 27992648 -190044510 - L2 LINE L2 -4 3309 3195 186 348 57 57 chr3 27993290 27993431 -190043727 + L2 LINE L2 2949 3089 -183 216 316 63 32 chr3 27993513 27993608 -190043550 + L2 LINE L2 3137 3234 -38 621 176 33 4 chr3 27995084 27995336 -190041822 + CT-rich Low_complexity Low_complexity 1 259 0 2215 95 7 0 chr3 27995699 27995993 -190041165 - AluSx SINE Alu -16 296 1 303 381 8 0 chr3 28096147 28096265 -189940893 - L2 LINE L2 0 3272 3154 1339 79 6 0 chr3 28096394 28096571 -189940587 - AluSq SINE Alu -8 305 128 711 128 38 8 chr3 28096575 28096708 -189940450 - AluSg/x SINE Alu -10 302 166 609 279 77 6 chr3 28096847 28097030 -189940128 - MIR SINE MIR 0 262 67 724 208 169 35 chr3 28097178 28097409 -189939749 + MIR SINE MIR 1 262 0 340 74 19 0 chr3 28098096 28098150 -189939008 - Alu SINE Alu -253 55 1 701 274 120 102 chr3 28098409 28098910 -189938248 + L2 LINE L2 2804 3313 0 2332 92 7 0 chr3 28099456 28099749 -189937409 + AluSp SINE Alu 1 295 -18 201 395 12 0 chr3 28100436 28100522 -189936636 - L2 LINE L2 -674 2640 2554 279 202 161 40 chr3 28100567 28100691 -189936467 - L1MC5 LINE L1 -68 7893 7755 488 188 117 104 chr3 28100692 28100932 -189936226 - L2 LINE L2 -770 2544 2302 666 268 6 11 chr3 28101057 28101236 -189935922 + MER5B DNA MER1_type 1 178 0 525 244 165 37 chr3 28101259 28101423 -189935735 + MER5A DNA MER1_type 3 187 -2 272 350 57 16 chr3 28101423 28101611 -189935547 + L2 LINE L2 2909 3104 -168 7516 30 0 1 chr3 28101984 28103416 -189933742 - L1PA3 LINE L1 0 6155 4717 829 113 0 0 chr3 28103416 28103531 -189933627 - AluY SINE Alu -78 233 119 210 91 0 0 chr3 28103873 28103906 -189933252 + (A)n Simple_repeat Simple_repeat 1 33 0 1237 183 34 52 chr3 28104134 28104355 -189932803 - MER33 DNA MER1_type -2261 324 109 2218 132 0 3 chr3 28104355 28104665 -189932493 + AluSx SINE Alu 1 309 -3 1237 183 34 52 chr3 28104665 28104771 -189932387 - MER33 DNA MER1_type -2476 109 3 2542 71 0 3 chr3 28104863 28105174 -189931984 + AluY SINE Alu 1 310 -1 4424 145 24 1 chr3 28105429 28106148 -189931010 - L1PA16 LINE L1 -16 6150 5416 260 303 0 0 chr3 28106517 28106583 -189930575 + (CA)n Simple_repeat Simple_repeat 1 66 0 205 292 0 0 chr3 28107726 28107774 -189929384 - L2 LINE L2 -15 3298 3251 331 259 211 24 chr3 28108956 28109174 -189927984 - MER102a DNA MER1_type -3 327 71 2068 117 13 7 chr3 28110099 28110398 -189926760 + AluSx SINE Alu 1 301 -11 249 337 21 11 chr3 28110588 28110683 -189926475 + MIR SINE MIR 44 139 -69 30 45 0 0 chr3 28110998 28111042 -189926116 + AT_rich Low_complexity Low_complexity 1 44 0 243 0 0 0 chr3 28111783 28111810 -189925348 + (T)n Simple_repeat Simple_repeat 1 27 0 505 258 84 0 chr3 28112721 28112876 -189924282 - MER3 DNA MER1_type -30 179 12 281 254 76 17 chr3 28112891 28113009 -189924149 - L1MC/D LINE L1 -1980 5828 5704 322 302 71 63 chr3 28113020 28113660 -189923498 - L1MC/D LINE L1 -460 5661 4993 2071 71 0 43 chr3 28113772 28114084 -189923074 - AluSc SINE Alu 0 311 12 1045 172 146 8 chr3 28114179 28114440 -189922718 - MER33 DNA MER1_type -22 302 6 891 326 64 64 chr3 28114548 28114761 -189922397 + L3 LINE CR1 933 1145 -432 2510 70 0 0 chr3 28114761 28115061 -189922097 + AluY SINE Alu 1 300 -11 891 326 64 64 chr3 28115061 28115491 -189921667 + L3 LINE CR1 1144 1576 -1 242 189 0 38 chr3 28116604 28116657 -189920501 + L2 LINE L2 3263 3313 0 1739 139 57 7 chr3 28116930 28117210 -189919948 - AluJb SINE Alu -18 294 1 694 165 17 0 chr3 28117248 28117363 -189919795 + FLAM_C SINE Alu 1 117 -26 330 279 100 0 chr3 28117524 28117664 -189919494 - L1ME4a LINE L1 -6 6115 5962 1687 151 3 68 chr3 28118330 28118654 -189918504 - AluJo SINE Alu -9 303 1 34 42 0 0 chr3 28119032 28119080 -189918078 + AT_rich Low_complexity Low_complexity 1 48 0 279 211 0 0 chr3 28119575 28119627 -189917531 + L2 LINE L2 3214 3265 -7 1871 148 24 3 chr3 28119934 28120231 -189916927 - AluSx SINE Alu -9 303 1 23 33 0 0 chr3 28121967 28121997 -189915161 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr3 28123596 28123627 -189913531 + AT_rich Low_complexity Low_complexity 1 31 0 330 258 78 12 chr3 28123783 28123950 -189913208 - L1M4 LINE L1 -3639 2507 2330 270 287 19 9 chr3 28123971 28124079 -189913079 + L1MC/D LINE L1 5703 5811 -1997 212 147 0 0 chr3 28124138 28124172 -189912986 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 28 29 0 0 chr3 28125831 28125866 -189911292 + AT_rich Low_complexity Low_complexity 1 35 0 719 142 9 0 chr3 28125866 28125972 -189911186 - AluJb SINE Alu -20 292 186 1268 218 59 22 chr3 28126180 28126715 -189910443 - MER69 DNA AcHobo -4 2522 248 452 222 0 0 chr3 28126691 28126772 -189910386 - MER69 DNA AcHobo -2444 82 2 * 5188 100 1 25 chr3 28127265 28128055 -189909103 + L1PA16 LINE L1 1837 2607 -3539 782 181 10 60 chr3 28128055 28128254 -189908904 + L1 LINE L1 4366 4554 -1592 2483 163 24 5 chr3 28128255 28128673 -189908485 + MSTB LTR MaLR 1 426 0 8223 189 51 9 chr3 28128673 28130198 -189906960 + MSTB-int LTR MaLR 1 1595 -56 2370 95 3 0 chr3 28130198 28130504 -189906654 + AluSx SINE Alu 1 307 -5 8223 189 51 9 chr3 28130504 28130544 -189906614 + MSTB-int LTR MaLR 1595 1632 -19 2525 150 26 12 chr3 28130565 28130984 -189906174 + MSTB LTR MaLR 2 426 0 5243 135 32 6 chr3 28130984 28131484 -189905674 + L1PA16 LINE L1 4551 5037 -1129 2788 87 0 13 chr3 28131484 28131864 -189905294 + THE1C LTR MaLR 1 375 0 5243 135 32 6 chr3 28131864 28132958 -189904200 + L1PA16 LINE L1 5037 6165 -1 798 215 13 64 chr3 28132958 28133191 -189903967 - L1MD3 LINE L1 -4 7991 7771 296 301 9 18 chr3 28133238 28133351 -189903807 - L1M4 LINE L1 -1522 4624 4513 396 358 74 18 chr3 28133433 28133827 -189903331 - L1M4 LINE L1 -1632 4514 4099 733 267 108 26 chr3 28133871 28134178 -189902980 - L2 LINE L2 -1262 2052 1721 851 277 134 3 chr3 28134209 28134538 -189902620 - L2 LINE L2 -1994 1320 949 11871 126 14 55 chr3 28134838 28137587 -189899571 - L1P3 LINE L1 -3727 2734 2 9710 192 25 18 chr3 28137587 28137599 -189899559 - L1PA15-16 LINE L1 -3049 3800 3790 195 100 0 0 chr3 28137599 28137629 -189899529 + (TTG)n Simple_repeat Simple_repeat 2 31 0 9710 192 25 18 chr3 28137629 28139459 -189897699 - L1PA15-16 LINE L1 -3059 3790 1924 1925 135 14 17 chr3 28139459 28139756 -189897402 + AluJb SINE Alu 1 296 -16 9710 192 25 18 chr3 28139756 28140450 -189896708 - L1PA15-16 LINE L1 -4925 1924 1236 302 286 16 24 chr3 28140724 28140850 -189896308 + L1ME LINE L1 5687 5811 -310 2297 100 0 22 chr3 28141460 28141771 -189895387 - AluSc SINE Alu -5 304 1 30 27 0 0 chr3 28141999 28142036 -189895122 + AT_rich Low_complexity Low_complexity 1 37 0 185 0 40 0 chr3 28143340 28143365 -189893793 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 15635 27 1 0 chr3 28143381 28145994 -189891164 - L1PA3 LINE L1 -5 6150 3535 1643 187 192 145 chr3 28146982 28147956 -189889202 + LTR28 LTR ERV1 1 1020 0 8837 208 39 20 chr3 28148174 28148396 -189888762 - L1MC/D LINE L1 -557 5609 5393 2188 99 30 0 chr3 28148396 28148699 -189888459 - AluSx SINE Alu 0 312 1 8837 208 39 20 chr3 28148699 28148863 -189888295 - L1MC/D LINE L1 -773 5393 5234 2483 141 20 0 chr3 28148863 28149266 -189887892 - L1PA15 LINE L1 -6 6159 5749 8837 208 39 20 chr3 28149266 28149290 -189887868 - L1MC/D LINE L1 -932 5234 5212 197 32 0 32 chr3 28149290 28149321 -189887837 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8837 208 39 20 chr3 28149321 28151493 -189885665 - L1MC/D LINE L1 -954 5212 3068 7051 197 21 7 chr3 28151494 28153877 -189883281 - L1PA15-16 LINE L1 -4770 2079 2 517 283 57 65 chr3 28154425 28154761 -189882397 + L1ME4a LINE L1 5293 5625 -496 236 297 76 21 chr3 28154827 28154972 -189882186 + L1ME4a LINE L1 5931 6083 -38 258 200 0 0 chr3 28155121 28155181 -189881977 + T-rich Low_complexity Low_complexity 1 60 0 7680 17 12 0 chr3 28155181 28156518 -189880640 - L1PA3 LINE L1 0 6155 4812 302 323 0 19 chr3 28157012 28157173 -189879985 + MER112 DNA MER1_type 97 254 -6 2171 84 4 0 chr3 28157196 28157471 -189879687 + AluSp SINE Alu 1 276 -37 264 59 0 0 chr3 28157471 28157505 -189879653 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 783 299 53 0 chr3 28157868 28158112 -189879046 - MIR SINE MIR 0 262 6 2304 103 0 22 chr3 28158276 28158595 -189878563 + AluSx SINE Alu 1 312 0 1781 154 4 11 chr3 28158700 28158980 -189878178 + AluJb SINE Alu 3 280 -32 21 36 0 0 chr3 28158980 28159008 -189878150 + AT_rich Low_complexity Low_complexity 1 28 0 * 412 316 37 11 chr3 28159003 28159190 -189877968 - L1MC/D LINE L1 -2017 5791 5600 481 231 56 28 chr3 28159203 28159346 -189877812 - MER113 DNA MER1_type? -216 305 159 22 35 0 0 chr3 28159393 28159422 -189877736 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr3 28160132 28160159 -189876999 + (A)n Simple_repeat Simple_repeat 1 27 0 15517 100 22 0 chr3 28160626 28163739 -189873419 - L1PA7 LINE L1 0 6154 2988 737 105 9 0 chr3 28163740 28163845 -189873313 - U6 snRNA snRNA -1 106 1 374 329 124 29 chr3 28163878 28164185 -189872973 - L2 LINE L2 -1069 2245 1910 4698 57 4 147 chr3 28164203 28165006 -189872152 + LTR12 LTR ERV1 1 688 0 13837 105 18 11 chr3 28165006 28168035 -189869123 + HERV9 LTR ERV1 1 3139 -5260 6021 87 12 8 chr3 28168042 28168904 -189868254 + HERV9 LTR ERV1 4080 4944 -3455 1831 105 64 38 chr3 28168905 28169602 -189867556 + Harlequin LTR ERV1 713 4405 -3380 1001 102 0 0 chr3 28169579 28169736 -189867422 + Harlequin LTR ERV1 1584 1740 -5156 * 5301 96 4 0 chr3 28169734 28170503 -189866655 + Harlequin LTR ERV1 7626 8397 -2 5545 59 0 34 chr3 28170506 28171218 -189865940 + LTR12 LTR ERV1 1 688 0 248 377 117 23 chr3 28171425 28171725 -189865433 - L2 LINE L2 -1634 1680 1353 721 183 15 0 chr3 28171768 28171899 -189865259 + AluJo/FLAM SINE Alu 1 133 -169 1278 115 0 11 chr3 28171902 28172085 -189865073 + AluY SINE Alu 1 181 -130 2877 123 21 58 chr3 28172187 28172435 -189864723 - L1MA6 LINE L1 -160 6140 5884 2541 73 0 0 chr3 28172435 28172737 -189864421 - AluSc SINE Alu 0 309 8 2877 123 21 58 chr3 28172737 28173057 -189864101 - L1MA6 LINE L1 -416 5884 5593 568 208 108 0 chr3 28173057 28173177 -189863981 - AluJb SINE Alu -175 137 5 1901 157 32 8 chr3 28173180 28173718 -189863440 - L1MA6 LINE L1 -691 5609 5066 303 284 24 47 chr3 28173883 28174010 -189863148 + L2 LINE L2 3190 3313 0 585 227 180 26 chr3 28174244 28174438 -189862720 - MER58A DNA MER1_type 0 224 1 729 264 97 0 chr3 28174459 28174686 -189862472 + HsTC2c DNA Tc2 464 712 -17 209 205 0 0 chr3 28174784 28174823 -189862335 - L3 LINE CR1 -1139 438 400 29 0 0 0 chr3 28174932 28174961 -189862197 + AT_rich Low_complexity Low_complexity 1 29 0 41 48 0 0 chr3 28175009 28175071 -189862087 + AT_rich Low_complexity Low_complexity 1 62 0 1790 173 26 7 chr3 28175180 28175642 -189861516 + AluJb SINE Alu 1 468 0 269 133 0 22 chr3 28175642 28175687 -189861471 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 662 263 61 76 chr3 28175944 28176389 -189860769 - L1MEd LINE L1 -5096 1023 586 1278 166 100 44 chr3 28176418 28176689 -189860469 + AluSx SINE Alu 1 286 -26 384 59 0 0 chr3 28176689 28176740 -189860418 + (GGGGA)n Simple_repeat Simple_repeat 1 51 0 220 70 47 23 chr3 28176739 28176782 -189860376 + GA-rich Low_complexity Low_complexity 2 45 0 * 2143 245 46 24 chr3 28176929 28177479 -189859679 + Charlie7 DNA MER1_type 720 1292 -1320 2751 10 0 0 chr3 28177479 28177780 -189859378 + AluYa5 SINE Alu 1 301 -10 2143 245 46 24 chr3 28177780 28177972 -189859186 + Charlie7 DNA MER1_type 1292 1478 -1134 1402 163 0 13 chr3 28178079 28178318 -189858840 + AluJb SINE Alu 1 236 -76 730 257 49 66 chr3 28178345 28178532 -189858626 - LTR16A LTR ERVL -61 389 207 4235 135 28 33 chr3 28178532 28179311 -189857847 - L1MA7 LINE L1 0 6291 5517 730 257 49 66 chr3 28179311 28179427 -189857731 - LTR16A LTR ERVL -243 207 91 772 242 161 27 chr3 28179490 28179831 -189857327 + Charlie7 DNA MER1_type 1542 1948 -664 1919 169 3 13 chr3 28179831 28180138 -189857020 + AluJb SINE Alu 1 304 -8 772 242 161 27 chr3 28180138 28180205 -189856953 + Charlie7 DNA MER1_type 1948 2005 -607 4145 178 45 30 chr3 28180322 28181322 -189855836 + L1P LINE L1 3030 4044 -2102 7095 171 28 3 chr3 28181322 28182332 -189854826 + L1PA14 LINE L1 3872 4855 -1306 1633 154 47 68 chr3 28182332 28182715 -189854443 - THE1C LTR MaLR 0 375 1 7095 171 28 3 chr3 28182715 28183958 -189853200 + L1PA14 LINE L1 4855 6159 -2 26 0 0 0 chr3 28183958 28183984 -189853174 + AT_rich Low_complexity Low_complexity 1 26 0 393 248 20 0 chr3 28183984 28184085 -189853073 + Charlie7 DNA MER1_type 2129 2231 -381 296 133 18 0 chr3 28184186 28184246 -189852912 - Alu SINE Alu -260 40 1 * 870 188 42 5 chr3 28184246 28184447 -189852711 + Charlie5 DNA MER1_type 2377 2585 -27 216 0 0 0 chr3 28184685 28184709 -189852449 + (T)n Simple_repeat Simple_repeat 1 24 0 278 314 29 39 chr3 28185864 28185966 -189851192 - MIR SINE MIR -63 145 45 255 256 0 39 chr3 28186169 28186247 -189850911 - MER116 DNA Mariner 0 80 6 218 324 101 53 chr3 28186430 28186677 -189850481 - MIR SINE MIR -1 261 3 1466 158 5 0 chr3 28188428 28188650 -189848508 + AluJo SINE Alu 85 307 -5 257 284 14 27 chr3 28191186 28191260 -189845898 + L3 LINE CR1 1503 1575 -2 22 0 0 0 chr3 28192158 28192180 -189844978 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 28193369 28193390 -189843768 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 28193505 28193526 -189843632 + AT_rich Low_complexity Low_complexity 1 21 0 375 186 0 0 chr3 28195286 28195388 -189841770 + (TA)n Simple_repeat Simple_repeat 2 103 0 1741 157 91 0 chr3 28195629 28195947 -189841211 - MER7A DNA MER2_type 0 346 2 1112 162 26 64 chr3 28196171 28196405 -189840753 + AluJb SINE Alu 84 308 -4 2245 106 3 0 chr3 28196715 28197008 -189840150 + AluSq SINE Alu 1 294 -19 1809 199 90 37 chr3 28197010 28197058 -189840100 - L1ME2 LINE L1 0 6164 6120 846 111 0 24 chr3 28197058 28197184 -189839974 + FLAM_C SINE Alu 1 123 -10 1809 199 90 37 chr3 28197184 28197682 -189839476 - L1ME2 LINE L1 -44 6120 5589 183 386 34 0 chr3 28197888 28197976 -189839182 - L3 LINE CR1 -1012 565 475 990 57 16 0 chr3 28198110 28198232 -189838926 - AluY SINE Alu -18 293 170 466 274 57 99 chr3 28198512 28198775 -189838383 - MIR SINE MIR -8 254 3 196 309 90 64 chr3 28199505 28199693 -189837465 - L2 LINE L2 -214 3058 2866 529 252 88 17 chr3 28199837 28200075 -189837083 + L1MEd LINE L1 3 257 -5862 554 285 48 69 chr3 28200223 28200514 -189836644 + L1MEd LINE L1 489 773 -5346 329 187 65 28 chr3 28200570 28200677 -189836481 + L1MEd LINE L1 980 1090 -5029 345 280 65 0 chr3 28200689 28200796 -189836362 + L2 LINE L2 3195 3308 -5 244 202 211 10 chr3 28200816 28200920 -189836238 + L1MEd LINE L1 1133 1257 -4862 1441 297 46 45 chr3 28200999 28201993 -189835165 + L1ME2 LINE L1 116 1110 -5286 2910 228 110 37 chr3 28202021 28202346 -189834812 + L1ME2 LINE L1 2965 3265 -2950 3205 124 18 6 chr3 28202346 28202854 -189834304 - MER75 DNA T2_type 0 514 1 2910 228 110 37 chr3 28202854 28203965 -189833193 + L1ME2 LINE L1 3265 4506 -1709 2212 148 80 2 chr3 28204132 28204531 -189832627 - MSTB1 LTR MaLR -2 430 1 249 230 72 50 chr3 28204785 28204885 -189832273 + L1MB3 LINE L1 3643 3748 -2398 2254 101 0 3 chr3 28204885 28205181 -189831977 + AluSx SINE Alu 1 295 -17 249 230 72 50 chr3 28205181 28205219 -189831939 + L1MB3 LINE L1 3748 3784 -2362 730 202 118 0 chr3 28205228 28205456 -189831702 + L1MB3 LINE L1 5114 5368 -778 * 1908 161 55 5 chr3 28205454 28205839 -189831319 + L1MB3 LINE L1 5738 6141 -42 1311 171 92 61 chr3 28205839 28206132 -189831026 + AluJo SINE Alu 1 302 -10 346 302 62 10 chr3 28206256 28206448 -189830710 + L1P LINE L1 4856 5057 -1089 315 263 118 59 chr3 28206613 28207157 -189830001 + L1ME2 LINE L1 5383 5958 -275 519 138 21 0 chr3 28207395 28207489 -189829669 - MER58 DNA MER1_type 0 2420 2325 478 198 6 185 chr3 28207484 28207641 -189829517 - MER58 DNA MER1_type -239 147 19 * 616 154 8 32 chr3 28207637 28207760 -189829398 + MER3 DNA MER1_type 8 127 -82 2162 48 44 11 chr3 28207760 28208033 -189829125 - AluY SINE Alu -14 297 16 2285 86 21 0 chr3 28209237 28209528 -189827630 + AluSp SINE Alu 1 297 -16 29 60 0 0 chr3 28209600 28209650 -189827508 + AT_rich Low_complexity Low_complexity 1 50 0 924 191 6 0 chr3 28210357 28210514 -189826644 - AluJb SINE Alu -22 290 133 345 226 195 18 chr3 28211175 28211227 -189825931 - MER5A DNA MER1_type -1 188 147 2067 110 13 3 chr3 28211227 28211527 -189825631 + AluSp SINE Alu 1 303 -10 345 226 195 18 chr3 28211527 28211599 -189825559 - MER5A DNA MER1_type -42 147 31 1535 168 3 67 chr3 28211684 28211999 -189825159 + AluJb SINE Alu 14 308 -4 232 258 72 21 chr3 28212019 28212116 -189825042 - L1MC5 LINE L1 -54 7907 7806 2154 104 0 26 chr3 28212134 28212441 -189824717 - AluSq SINE Alu -10 303 5 271 367 39 16 chr3 28212479 28212607 -189824551 + MIR SINE MIR 67 197 -65 217 304 26 9 chr3 28213583 28213698 -189823460 + T-rich Low_complexity Low_complexity 2 118 0 1118 152 119 0 chr3 28214289 28214499 -189822659 + MER46A DNA MER2_type 1 235 -1 2321 64 14 14 chr3 28214522 28214817 -189822341 + AluY SINE Alu 1 295 -16 373 313 131 23 chr3 28215167 28215381 -189821777 + MIR SINE MIR 13 249 -13 23 78 0 0 chr3 28215500 28215551 -189821607 + AT_rich Low_complexity Low_complexity 1 51 0 346 239 0 22 chr3 28216380 28216472 -189820686 + L1ME2 LINE L1 5944 6033 -131 951 202 64 0 chr3 28216472 28216660 -189820498 + MER20 DNA MER1_type 1 200 -19 354 211 48 0 chr3 28216666 28216770 -189820388 + L1ME2 LINE L1 6047 6155 -9 243 0 0 0 chr3 28216885 28216912 -189820246 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1855 294 142 42 chr3 28217409 28218443 -189818715 - L2 LINE L2 0 3313 2384 1962 143 0 14 chr3 28218443 28218736 -189818422 - AluJo SINE Alu -23 289 1 1855 294 142 42 chr3 28218736 28219022 -189818136 - L2 LINE L2 -929 2384 2128 1632 158 53 14 chr3 28219022 28219306 -189817852 + AluJb SINE Alu 1 295 -17 1855 294 142 42 chr3 28219306 28219690 -189817468 - L2 LINE L2 -1185 2128 1454 1266 192 7 97 chr3 28219852 28220160 -189816998 + AluJb SINE Alu 1 280 -32 2165 126 7 0 chr3 28220811 28221113 -189816045 + AluSx SINE Alu 2 305 -7 201 200 20 20 chr3 28221173 28221223 -189815935 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2477 51 0 0 chr3 28221744 28222038 -189815120 + AluY SINE Alu 1 294 -17 198 208 104 0 chr3 28223307 28223355 -189813803 - L2 LINE L2 0 3272 3220 187 293 75 47 chr3 28224693 28224799 -189812359 - MIR SINE MIR -14 248 140 290 366 108 39 chr3 28226148 28226427 -189810731 + L2 LINE L2 2919 3216 -56 1000 220 99 0 chr3 28226796 28227019 -189810139 + MER45B DNA AcHobo 2 246 -794 1764 157 18 3 chr3 28227117 28227403 -189809755 - AluSx SINE Alu -22 290 1 682 207 0 0 chr3 28227409 28227525 -189809633 + MER45B DNA AcHobo 488 603 -437 395 234 0 0 chr3 28227525 28227602 -189809556 + MER45B DNA AcHobo 964 1040 0 347 247 25 0 chr3 28227915 28227996 -189809162 - MIR SINE MIR -174 88 6 1410 191 32 50 chr3 28228531 28228814 -189808344 - AluJo SINE Alu -32 280 3 24 53 0 0 chr3 28228824 28228862 -189808296 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 28228969 28228994 -189808164 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr3 28229340 28229361 -189807797 + (T)n Simple_repeat Simple_repeat 1 21 0 468 261 197 18 chr3 28229414 28229632 -189807526 - MIR SINE MIR -1 261 5 266 269 0 0 chr3 28230024 28230091 -189807067 + MLT1C LTR MaLR 196 262 -205 867 221 107 12 chr3 28230091 28230335 -189806823 + MLT1C LTR MaLR 201 467 0 3162 171 39 24 chr3 28230354 28230430 -189806728 + L1MD2 LINE L1 5254 5327 -1032 2207 110 7 7 chr3 28230430 28230738 -189806420 + AluSc SINE Alu 1 308 -1 3162 171 39 24 chr3 28230738 28231333 -189805825 + L1MD2 LINE L1 5327 5935 -424 2185 89 28 3 chr3 28231387 28231678 -189805480 + AluSx SINE Alu 15 312 0 643 81 35 0 chr3 28231794 28231881 -189805277 - HY4 scRNA scRNA -3 90 1 1600 223 61 57 chr3 28231884 28232240 -189804918 - L1MC4 LINE L1 -135 7907 7547 1452 193 15 8 chr3 28232240 28232505 -189804653 + AluSq SINE Alu 31 297 -16 1600 223 61 57 chr3 28232505 28232673 -189804485 - L1MC4 LINE L1 -495 7547 7381 1204 163 12 0 chr3 28232808 28233116 -189804042 - L1PA14 LINE L1 -1 6160 5798 480 252 38 15 chr3 28233108 28233239 -189803919 + L1MD2 LINE L1 5925 6058 -301 * 4502 178 29 7 chr3 28233271 28234236 -189802922 - L1MB8 LINE L1 -5 6173 5190 2126 129 0 13 chr3 28234236 28234545 -189802613 - AluSq SINE Alu -8 305 1 470 231 103 0 chr3 28234552 28234669 -189802489 - FLAM_A SINE Alu -3 130 2 552 193 0 0 chr3 28234771 28234885 -189802273 - L1MB8 LINE L1 -1025 5121 5008 992 204 70 70 chr3 28234890 28235175 -189801983 + L1MD2 LINE L1 6067 6351 -8 1362 205 69 11 chr3 28235772 28236147 -189801011 + LTR37A LTR ERV1 30 426 0 195 338 69 46 chr3 28236221 28236437 -189800721 - L2 LINE L2 -101 3212 2992 399 321 147 36 chr3 28236544 28237049 -189800109 - L2 LINE L2 -2227 1087 527 196 368 0 0 chr3 28237064 28237132 -189800026 - L2 LINE L2 -2902 412 345 352 279 56 62 chr3 28237187 28237560 -189799598 - L1P LINE L1 -834 5312 4942 372 194 14 0 chr3 28237795 28237867 -189799291 + MIR SINE MIR 81 153 -109 32 101 0 0 chr3 28237871 28237980 -189799178 + AT_rich Low_complexity Low_complexity 1 109 0 421 329 127 32 chr3 28238303 28238982 -189798176 - L2 LINE L2 -2 3270 2533 211 284 174 9 chr3 28239017 28239126 -189798032 + L3b LINE CR1 1212 1338 -245 2434 168 68 41 chr3 28239425 28239985 -189797173 + MER90 LTR ERV1 1 575 0 1449 161 80 40 chr3 28240343 28240642 -189796516 - MER44D DNA MER2_type -5 604 24 2244 102 3 0 chr3 28241600 28241894 -189795264 - AluSx SINE Alu -12 300 6 24 0 0 0 chr3 28241915 28241939 -189795219 + AT_rich Low_complexity Low_complexity 1 24 0 1152 163 0 25 chr3 28242165 28242361 -189794797 - AluJo SINE Alu -41 271 81 874 231 185 57 chr3 28242414 28242553 -189794605 - L1MC4 LINE L1 0 8042 7922 423 0 0 0 chr3 28242553 28242600 -189794558 + (CA)n Simple_repeat Simple_repeat 2 48 0 874 231 185 57 chr3 28242600 28242919 -189794239 - L1MC4 LINE L1 -120 7922 7525 264 271 80 33 chr3 28242924 28243075 -189794083 + Charlie7 DNA MER1_type 2454 2611 -1 372 160 0 0 chr3 28293172 28293272 -189743886 + G-rich Low_complexity Low_complexity 1 100 0 30203 34 2 0 chr3 28293314 28297954 -189739204 + L1PA3 LINE L1 1507 6154 -1 6858 118 5 11 chr3 28298757 28300176 -189736982 + L1MA1 LINE L1 4887 6297 -5 306 306 139 0 chr3 28300282 28300390 -189736768 - L2 LINE L2 -1 3312 3190 245 260 170 10 chr3 28300647 28300747 -189736411 - MIR SINE MIR -46 216 101 1802 191 25 0 chr3 28300894 28301323 -189735835 - MLT2B1 LTR ERVL 0 554 3 1476 318 26 61 chr3 28301398 28302278 -189734880 - L2 LINE L2 -83 3230 2387 386 332 58 31 chr3 28302563 28302855 -189734303 - LTR16C LTR ERVL -90 401 102 1671 204 0 10 chr3 28303596 28303890 -189733268 + AluJo SINE Alu 1 291 -21 244 196 208 40 chr3 28304210 28304383 -189732775 + L1MC5 LINE L1 7664 7865 -96 246 62 0 0 chr3 28305170 28305202 -189731956 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1040 199 11 0 chr3 28306005 28306191 -189730967 + MER5A DNA MER1_type 1 188 -1 864 206 78 0 chr3 28306477 28306657 -189730501 - MER3 DNA MER1_type 0 209 16 870 140 0 15 chr3 28306661 28306797 -189730361 - AluJo SINE Alu -178 134 1 830 203 0 0 chr3 28306878 28307031 -189730127 + MER63A DNA MER1_type 58 210 0 825 260 63 4 chr3 28309619 28309873 -189727285 + MLT1H LTR MaLR 23 291 -258 424 304 137 34 chr3 28311339 28311543 -189725615 + MIR SINE MIR 36 260 -2 1769 177 47 113 chr3 28311669 28311779 -189725379 + L1MC4 LINE L1 7441 7557 -485 2481 72 3 0 chr3 28311779 28312084 -189725074 - AluSp SINE Alu -6 307 2 1769 177 47 113 chr3 28312084 28312435 -189724723 + L1MC4 LINE L1 7557 7849 -193 2099 119 19 19 chr3 28312435 28312747 -189724411 - AluSx SINE Alu 0 312 1 1769 177 47 113 chr3 28312747 28312929 -189724229 + L1MC4 LINE L1 7849 8042 0 390 284 46 126 chr3 28312965 28313250 -189723908 + L2 LINE L2 3009 3270 -2 1933 143 38 35 chr3 28315512 28315884 -189721274 - THE1C LTR MaLR 0 375 3 251 350 82 66 chr3 28316012 28316315 -189720843 + L2 LINE L2 2576 2883 -431 2325 93 3 13 chr3 28316341 28316643 -189720515 - AluSp SINE Alu -14 299 1 236 196 0 0 chr3 28316831 28316887 -189720271 - L1MC4 LINE L1 -1344 6698 6643 3190 58 5 16 chr3 28317018 28317465 -189719693 - L1P LINE L1 -5050 1096 655 381 326 65 28 chr3 28317590 28317892 -189719266 - MLT1J2 LTR MaLR -66 380 65 1185 247 90 14 chr3 28318618 28318974 -189718184 + MSTD LTR MaLR 5 387 -9 1053 310 26 69 chr3 28319047 28319680 -189717478 - ERVL LTR ERVL -323 5331 4767 2078 153 19 25 chr3 28319680 28320047 -189717111 - MLT1A1 LTR MaLR 0 365 1 1053 310 26 69 chr3 28320047 28320198 -189716960 - ERVL LTR ERVL -887 4767 4611 342 289 126 15 chr3 28320369 28320504 -189716654 - MIR3 SINE MIR -32 176 27 246 226 0 0 chr3 28320725 28320787 -189716371 + L2 LINE L2 2996 3057 -215 230 295 39 0 chr3 28321102 28321180 -189715978 + L2 LINE L2 2303 2383 -931 22 0 0 0 chr3 28321265 28321287 -189715871 + AT_rich Low_complexity Low_complexity 1 22 0 475 279 28 0 chr3 28321488 28321667 -189715491 + Charlie8 DNA MER1_type 82 265 -2152 217 315 62 15 chr3 28321768 28321898 -189715260 + L2 LINE L2 2929 3064 -208 1774 176 70 40 chr3 28322179 28322623 -189714535 - LTR2B LTR ERV1 0 490 34 38178 65 2 7 chr3 28322644 28327752 -189709406 - Harlequin LTR ERV1 0 6896 1813 8165 62 74 107 chr3 28327735 28329200 -189707958 - Harlequin LTR ERV1 -5480 1416 1 * 1733 180 77 40 chr3 28329200 28329644 -189707514 - LTR2B LTR ERV1 0 490 31 780 286 18 13 chr3 28329950 28330177 -189706981 + MIR SINE MIR 35 262 0 829 241 127 0 chr3 28330321 28330533 -189706625 + MIR SINE MIR 3 241 -21 498 250 42 30 chr3 28330571 28330739 -189706419 - MIR SINE MIR -48 214 45 715 357 31 3 chr3 28330746 28331096 -189706062 + L2 LINE L2 2242 2601 -713 271 283 26 79 chr3 28332017 28332169 -189704989 + MIR3 SINE MIR 46 189 -19 436 230 0 0 chr3 28332376 28332476 -189704682 + MER103 DNA DNA 22 121 -45 225 261 33 43 chr3 28332626 28332718 -189704440 - L2 LINE L2 -8 3305 3215 2290 96 7 0 chr3 28333130 28333422 -189703736 - AluSg SINE Alu -16 294 1 407 289 100 17 chr3 28333486 28333666 -189703492 - MIR SINE MIR -56 206 12 567 282 29 0 chr3 28333691 28333861 -189703297 - MER63A DNA MER1_type -35 175 1 234 384 103 34 chr3 28334188 28334334 -189702824 + L2 LINE L2 3115 3270 -2 32 26 0 0 chr3 28334872 28334911 -189702247 + AT_rich Low_complexity Low_complexity 1 39 0 492 230 170 15 chr3 28335023 28335158 -189702000 + MER5A DNA MER1_type 27 182 -7 795 259 70 73 chr3 28335901 28336445 -189700713 + MER34 LTR ERV1 1 542 0 280 222 0 0 chr3 28336493 28336547 -189700611 + GA-rich Low_complexity Low_complexity 1 54 0 1920 118 59 7 chr3 28337345 28337642 -189699516 - AluSg SINE Alu 0 311 1 2533 70 0 6 chr3 28337915 28338228 -189698930 - AluY SINE Alu 0 311 1 1253 277 32 41 chr3 28338521 28338958 -189698200 - MLT1G LTR MaLR -95 495 63 2579 144 12 2 chr3 28338959 28339389 -189697769 + MER57B LTR ERV1 1 434 0 3911 147 19 14 chr3 28339389 28340057 -189697101 + MER57B-int LTR ERV1 1 672 -6865 3496 120 54 0 chr3 28340056 28340597 -189696561 + MER57B-int LTR ERV1 290 859 -5087 * 4235 162 59 4 chr3 28340580 28341359 -189695799 + MER57B-int LTR ERV1 1550 2371 -5166 921 121 11 22 chr3 28341358 28341533 -189695625 + MER57B-int LTR ERV1 1503 2014 -3932 * 2801 118 34 36 chr3 28341509 28341850 -189695308 + MER57B-int LTR ERV1 2167 2507 -5262 2314 107 3 3 chr3 28341850 28342159 -189694999 + AluY SINE Alu 1 309 -2 2801 118 34 36 chr3 28342159 28342448 -189694710 + MER57B-int LTR ERV1 2507 4065 -3704 1384 109 0 0 chr3 28342450 28342633 -189694525 + AluSg/x SINE Alu 129 311 -1 4401 148 65 47 chr3 28342633 28343756 -189693402 + MER57B-int LTR ERV1 2491 4041 -1720 * 11886 98 94 65 chr3 28343750 28344291 -189692867 + MER57B-int LTR ERV1 5310 5834 -1703 2271 98 20 7 chr3 28344291 28344597 -189692561 - AluSg SINE Alu 0 310 1 11886 98 94 65 chr3 28344597 28345624 -189691534 + MER57B-int LTR ERV1 5834 6960 -577 2085 115 11 0 chr3 28345624 28345938 -189691220 - AluSx SINE Alu 0 317 1 11886 98 94 65 chr3 28345938 28346533 -189690625 + MER57B-int LTR ERV1 6960 7537 0 2642 142 21 0 chr3 28346533 28346955 -189690203 + MER57B LTR ERV1 1 431 -3 290 333 40 33 chr3 28347771 28347921 -189689237 - MIR SINE MIR -81 181 31 2661 278 107 29 chr3 28348318 28349440 -189687718 - L2 LINE L2 -399 2915 1706 346 167 11 11 chr3 28349457 28349547 -189687611 + (TA)n Simple_repeat Simple_repeat 1 90 0 369 0 0 0 chr3 28349549 28349590 -189687568 + (TG)n Simple_repeat Simple_repeat 2 42 0 847 163 90 6 chr3 28349622 28349800 -189687358 - MER50 LTR ERV1 -19 715 523 588 269 126 31 chr3 28349864 28350254 -189686904 - MER50 LTR ERV1 -298 436 10 495 308 147 35 chr3 28350321 28350688 -189686470 - L1MC4 LINE L1 -547 7495 7088 5767 130 11 8 chr3 28350770 28351931 -189685227 + L1MA3 LINE L1 5062 6226 -79 335 145 16 0 chr3 28351931 28351993 -189685165 - AluSp/q SINE Alu -3 300 238 1305 146 5 15 chr3 28351994 28352199 -189684959 + AluSg/x SINE Alu 80 282 -30 219 103 0 0 chr3 28352203 28352242 -189684916 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr3 28352273 28352302 -189684856 + AT_rich Low_complexity Low_complexity 1 29 0 1316 221 77 83 chr3 28352307 28352930 -189684228 + LTR28 LTR ERV1 402 1020 0 675 260 30 24 chr3 28353011 28353410 -189683748 - L1MEc LINE L1 -4844 1371 961 1276 201 156 76 chr3 28353411 28354099 -189683059 + LTR1B LTR ERV1 1 743 -83 3083 243 44 15 chr3 28354226 28354774 -189682384 - L1MEc LINE L1 -5427 969 383 1885 156 6 16 chr3 28354774 28355089 -189682069 + AluJb SINE Alu 1 312 0 3083 243 44 15 chr3 28355089 28355448 -189681710 - L1MEc LINE L1 -6013 383 36 857 176 0 0 chr3 28356715 28356846 -189680312 - FLAM_C SINE Alu -12 131 1 271 310 0 0 chr3 28358110 28358181 -189678977 - MIR SINE MIR -136 126 56 256 303 13 0 chr3 28358498 28358574 -189678584 - MIR SINE MIR -116 146 70 456 306 110 14 chr3 28359126 28359335 -189677823 + MIR SINE MIR 15 243 -19 191 240 100 0 chr3 28359401 28359451 -189677707 - MIR SINE MIR -62 146 92 250 274 0 65 chr3 28359632 28359694 -189677464 + MIR SINE MIR 67 125 -83 436 119 0 0 chr3 28359699 28359758 -189677400 + AluSc SINE Alu 230 288 -21 347 269 69 35 chr3 28359863 28360008 -189677150 + L2 LINE L2 3160 3309 -4 2230 127 0 6 chr3 28361292 28361606 -189675552 + AluSq SINE Alu 1 312 -1 263 274 95 0 chr3 28361621 28361716 -189675442 - L1ME LINE L1 -302 5819 5716 306 283 33 20 chr3 28361789 28361941 -189675217 - HAL1b LINE L1 -7 1341 1188 205 276 52 0 chr3 28362068 28362126 -189675032 - MER5B DNA MER1_type -9 169 109 1645 218 81 63 chr3 28364715 28365299 -189671859 + MLT1G1 LTR MaLR 2 595 0 326 368 36 45 chr3 28365481 28365701 -189671457 + L2 LINE L2 3035 3252 -20 342 358 34 17 chr3 28366111 28366290 -189670868 - MER5A DNA MER1_type 0 189 8 769 259 126 43 chr3 28367557 28367977 -189669181 - LTR16A1 LTR ERVL -2 455 1 211 219 0 0 chr3 28368962 28369003 -189668155 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 463 187 30 18 chr3 28369102 28369228 -189667930 - L1ME2 LINE L1 -2 6168 6040 1152 208 59 44 chr3 28369261 28369602 -189667556 - L1ME2 LINE L1 -109 6055 5710 848 123 23 0 chr3 28369801 28369931 -189667227 - FLAM_C SINE Alu 0 133 1 28 86 0 0 chr3 28370894 28370964 -189666194 + AT_rich Low_complexity Low_complexity 1 70 0 1548 186 125 6 chr3 28373446 28373757 -189663401 + MER7A DNA MER2_type 1 346 0 261 0 0 0 chr3 28375124 28375153 -189662005 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 273 29 0 0 chr3 28375152 28375186 -189661972 + (TG)n Simple_repeat Simple_repeat 1 34 0 201 74 0 0 chr3 28375191 28375218 -189661940 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 657 282 41 44 chr3 28376854 28377148 -189660010 - MER102a DNA MER1_type -5 325 33 267 305 79 73 chr3 28378991 28379168 -189657990 + MIR SINE MIR 59 236 -26 603 215 156 32 chr3 28379210 28379396 -189657762 - MIR SINE MIR -6 256 48 523 269 136 23 chr3 28379481 28379871 -189657287 - L1ME4a LINE L1 -153 5968 5535 273 301 125 91 chr3 28379893 28380069 -189657089 - MIR3 SINE MIR -9 199 18 210 196 0 20 chr3 28380426 28380477 -189656681 + A-rich Low_complexity Low_complexity 5 54 0 529 323 47 5 chr3 28381407 28381599 -189655559 + MIR SINE MIR 1 200 -62 209 309 61 42 chr3 28381670 28381835 -189655323 - L2 LINE L2 -1217 2097 1930 267 362 45 20 chr3 28383664 28383863 -189653295 + Charlie8 DNA MER1_type 43 246 -2171 6120 110 4 4 chr3 28383906 28385357 -189651801 - L1PA13 LINE L1 -1 6162 4705 31575 106 12 54 chr3 28385359 28391784 -189645374 - L1PA7 LINE L1 -3 6151 12 4190 187 13 6 chr3 28391793 28392639 -189644519 - L1PA13 LINE L1 -1432 4714 3863 381 335 62 22 chr3 28393978 28394202 -189642956 + MIR SINE MIR 20 252 -10 561 314 76 13 chr3 28394240 28394660 -189642498 - MLT1L LTR MaLR -14 601 90 2360 78 0 16 chr3 28395418 28395726 -189641432 - AluY SINE Alu -8 303 1 3495 185 25 20 chr3 28396994 28397637 -189639521 + L1MA2 LINE L1 16 661 -6904 * 8379 187 68 52 chr3 28397629 28397722 -189639436 + L1MA2 LINE L1 2131 2221 -5502 2404 84 3 3 chr3 28397722 28398031 -189639127 + AluSg SINE Alu 1 309 -1 8379 187 68 52 chr3 28398031 28401600 -189635558 + L1MA2 LINE L1 2221 5733 -1990 2947 80 78 2 chr3 28401600 28401968 -189635190 + MLT2A1 LTR ERVL 1 405 -39 198 0 0 0 chr3 28401968 28401990 -189635168 + (TA)n Simple_repeat Simple_repeat 2 23 0 2947 80 78 2 chr3 28401990 28402034 -189635124 + MLT2A1 LTR ERVL 405 444 0 768 108 122 29 chr3 28402034 28402128 -189635030 + MLT2A1 LTR ERVL 293 406 -38 654 49 0 0 chr3 28402128 28402210 -189634948 + (TA)n Simple_repeat Simple_repeat 2 83 0 768 108 122 29 chr3 28402210 28402254 -189634904 + MLT2A1 LTR ERVL 406 444 0 8379 187 68 52 chr3 28402254 28403082 -189634076 + L1MA2 LINE L1 5733 6547 -1176 1937 158 10 3 chr3 28403082 28403379 -189633779 + AluJb SINE Alu 1 299 -13 8379 187 68 52 chr3 28403379 28404145 -189633013 + L1MA2 LINE L1 6547 7605 -118 2281 119 22 17 chr3 28404145 28404506 -189632652 + THE1C LTR MaLR 1 363 -12 826 98 25 0 chr3 28404511 28404633 -189632525 + L1MA2 LINE L1 7599 7723 0 432 338 65 29 chr3 28405100 28405378 -189631780 + LTR16C LTR ERVL 202 489 -2 228 260 78 26 chr3 28405484 28405561 -189631597 - MIR SINE MIR -131 131 51 240 200 83 161 chr3 28405660 28405840 -189631318 - LTR27 LTR ERV1 0 636 471 * 1577 163 122 11 chr3 28405838 28406184 -189630974 - LTR28 LTR ERV1 -675 345 1 15246 156 40 30 chr3 28406186 28411113 -189626045 - LTR28-int LTR ERV1 -1 6995 632 1041 129 138 45 chr3 28411115 28411339 -189625819 - LTR8A LTR ERV1 -481 246 2 1850 193 58 13 chr3 28411829 28412208 -189624950 + MSTD LTR MaLR 1 396 0 330 366 37 15 chr3 28412346 28412480 -189624678 - L2 LINE L2 -7 3265 3129 234 0 0 0 chr3 28413729 28413755 -189623403 + (T)n Simple_repeat Simple_repeat 1 26 0 249 227 86 125 chr3 28415012 28415140 -189622018 + MIR SINE MIR 5 127 -135 212 373 161 7 chr3 28415455 28415827 -189621331 + L2 LINE L2 1297 1737 -1577 3744 90 4 6 chr3 28415827 28416339 -189620819 - MER9 LTR ERVK 0 511 1 212 373 161 7 chr3 28416339 28416371 -189620787 + L2 LINE L2 1737 1763 -1551 590 290 160 31 chr3 28416407 28416700 -189620458 - MER102b DNA MER1_type 0 341 11 352 186 339 8 chr3 28416853 28416971 -189620187 - MER5A DNA MER1_type -29 160 4 371 319 59 15 chr3 28418100 28418235 -189618923 - MIR SINE MIR -108 154 14 1940 56 144 7 chr3 28418418 28418688 -189618470 - AluY SINE Alu -3 308 2 722 275 39 0 chr3 28418757 28418939 -189618219 - MER5A DNA MER1_type 0 189 1 454 261 35 45 chr3 28419168 28419367 -189617791 - L1ME LINE L1 -464 5657 5461 22 0 0 0 chr3 28421316 28421338 -189615820 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 28422022 28422056 -189615102 + AT_rich Low_complexity Low_complexity 1 34 0 269 145 58 29 chr3 28422058 28422127 -189615031 - MER4-int LTR ERV1 -4975 1623 1553 3239 91 11 7 chr3 28422128 28422591 -189614567 - L1PA11 LINE L1 -2 6172 5708 5048 195 47 16 chr3 28422948 28424324 -189612834 - L1MC1 LINE L1 -15 6598 5187 2080 166 66 20 chr3 28424317 28424905 -189612253 - L1MC1 LINE L1 -4166 2260 1554 * 878 185 82 108 chr3 28424905 28425335 -189611823 - MLT1A1 LTR MaLR 0 365 1 623 150 8 53 chr3 28425336 28425469 -189611689 - L1MC1 LINE L1 -4869 1557 1431 2182 107 18 18 chr3 28425469 28425806 -189611352 + THE1C LTR MaLR 1 337 -38 7591 149 19 51 chr3 28425811 28427270 -189609888 - L1MC1 LINE L1 -4995 1431 21 1669 159 18 18 chr3 28427562 28427839 -189609319 - AluJo SINE Alu -19 293 17 259 269 52 30 chr3 28428122 28428256 -189608902 - L1M4 LINE L1 -3141 3005 2869 29 78 0 0 chr3 28428283 28428347 -189608811 + AT_rich Low_complexity Low_complexity 1 64 0 769 229 38 0 chr3 28428393 28428550 -189608608 + FRAM SINE Alu 11 173 -3 362 252 62 55 chr3 28428578 28428852 -189608306 - L1M4 LINE L1 -3594 2552 2277 2044 113 0 63 chr3 28428959 28429277 -189607881 - AluSc SINE Alu -11 298 1 23 33 0 0 chr3 28429279 28429309 -189607849 + AT_rich Low_complexity Low_complexity 1 30 0 225 196 0 0 chr3 28429495 28429551 -189607607 + (TA)n Simple_repeat Simple_repeat 2 57 0 1474 207 4 4 chr3 28429750 28430025 -189607133 + AluJo SINE Alu 11 285 -27 1519 147 58 0 chr3 28430190 28430448 -189606710 + MER50 LTR ERV1 1 273 -461 380 293 167 0 chr3 28433099 28433273 -189603885 + L2 LINE L2 2598 2800 -514 373 212 104 39 chr3 28433284 28433478 -189603680 - MER58 DNA MER1_type -1 2419 10 485 331 60 62 chr3 28433494 28433926 -189603232 + L2 LINE L2 2815 3245 -68 380 283 118 72 chr3 28434527 28434847 -189602311 + L1ME4a LINE L1 5655 5995 -126 2316 123 30 6 chr3 28434847 28435213 -189601945 - THE1C LTR MaLR 0 375 1 380 283 118 72 chr3 28435213 28435267 -189601891 + L1ME4a LINE L1 5995 6045 -76 27 29 0 0 chr3 28435297 28435331 -189601827 + AT_rich Low_complexity Low_complexity 1 34 0 426 20 0 0 chr3 28437768 28437819 -189599339 + (CA)n Simple_repeat Simple_repeat 1 51 0 1370 174 41 10 chr3 28438192 28438485 -189598673 + L1MA9 LINE L1 5989 6290 -22 21 0 0 0 chr3 28438558 28438579 -189598579 + AT_rich Low_complexity Low_complexity 1 21 0 5673 177 32 18 chr3 28439723 28440750 -189596408 + L1PA13 LINE L1 1 1042 -5745 9553 229 19 31 chr3 28440758 28442377 -189594781 + L1PA13 LINE L1 1706 3331 -3466 401 41 0 0 chr3 28442377 28442426 -189594732 + MADE1 DNA Mariner 1 49 -31 9553 229 19 31 chr3 28442426 28443352 -189593806 + L1PA13 LINE L1 3331 4267 -2530 814 163 52 77 chr3 28443378 28443611 -189593547 + L1PA16 LINE L1 5940 6166 0 929 216 10 0 chr3 28443737 28443936 -189593222 - L1MB3 LINE L1 -113 6070 5870 4448 126 5 23 chr3 28444638 28445384 -189591774 - L1PA15 LINE L1 -7 6158 5426 845 208 25 95 chr3 28447350 28447591 -189589567 + MER58A DNA MER1_type 1 224 0 247 326 59 112 chr3 28447595 28448068 -189589090 - L2 LINE L2 0 3272 2825 424 291 127 14 chr3 28448897 28449117 -189588041 - MIR SINE MIR 0 262 18 434 158 0 0 chr3 28449602 28449684 -189587474 - L1 LINE L1 -921 6644 6563 17324 182 56 32 chr3 28449785 28452658 -189584500 - L1 LINE L1 -2671 4894 1857 207 0 0 0 chr3 28452658 28452681 -189584477 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 17324 182 56 32 chr3 28452681 28454565 -189582593 - L1 LINE L1 -5708 1857 19 2076 139 0 26 chr3 28455284 28455629 -189581529 - L1PA16 LINE L1 -9 6157 5822 1187 126 0 11 chr3 28456111 28456316 -189580842 - L1PA15 LINE L1 -199 5962 5769 5573 106 16 7 chr3 28456325 28457186 -189579972 - L1PB2 LINE L1 -2 6865 5997 9020 118 24 8 chr3 28457297 28459266 -189577892 - L1PB2 LINE L1 -4020 2843 636 1105 160 5 0 chr3 28459271 28459465 -189577693 - L1PB2 LINE L1 -6668 195 1 213 94 0 0 chr3 28460085 28460117 -189577041 + (ATG)n Simple_repeat Simple_repeat 3 34 0 815 171 18 6 chr3 28461505 28461669 -189575489 - L1MA10 LINE L1 0 6334 6169 207 0 0 0 chr3 28461793 28461816 -189575342 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 386 302 0 10 chr3 28461823 28461919 -189575239 - L2 LINE L2 -22 3291 3197 253 128 0 0 chr3 28463391 28463430 -189573728 + L1MC4a LINE L1 5625 5663 -458 460 341 28 8 chr3 28463485 28463740 -189573418 + MIR SINE MIR 3 262 0 361 286 101 55 chr3 28463743 28463942 -189573216 + L1MC4a LINE L1 5687 5894 -1914 237 368 0 0 chr3 28464144 28464220 -189572938 + MIR SINE MIR 110 185 -77 465 261 71 38 chr3 28464315 28464499 -189572659 + L2 LINE L2 3122 3311 -2 524 274 25 60 chr3 28464729 28464930 -189572228 - MIR SINE MIR -64 198 5 22 56 0 0 chr3 28465072 28465108 -189572050 + AT_rich Low_complexity Low_complexity 1 36 0 327 274 124 65 chr3 28465240 28465463 -189571695 + L1ME LINE L1 5261 5469 -652 2049 130 7 3 chr3 28465463 28465764 -189571394 + AluSg SINE Alu 1 302 -8 327 274 124 65 chr3 28465764 28465974 -189571184 + L1ME LINE L1 5469 5720 -401 27 49 0 0 chr3 28466022 28466063 -189571095 + AT_rich Low_complexity Low_complexity 1 41 0 2769 185 34 17 chr3 28466454 28467104 -189570054 + L1MA9 LINE L1 5543 6291 0 1002 298 81 24 chr3 28467737 28468120 -189569038 - MLT1I LTR MaLR 0 409 5 278 345 72 22 chr3 28468229 28468368 -189568790 - L2 LINE L2 -11 3261 3116 618 262 0 14 chr3 28469067 28469208 -189567950 - MLT1I LTR MaLR -1 408 270 196 157 59 0 chr3 28469558 28469609 -189567549 + CT-rich Low_complexity Low_complexity 4 57 0 281 232 14 14 chr3 28469625 28469694 -189567464 + CT-rich Low_complexity Low_complexity 4 72 0 299 284 216 8 chr3 28469832 28469966 -189567192 + MIR3 SINE MIR 44 205 -3 2334 84 43 3 chr3 28470706 28471053 -189566105 - L1MA2 LINE L1 -5 6299 5939 39 22 0 0 chr3 28471444 28471490 -189565668 + AT_rich Low_complexity Low_complexity 1 46 0 2147 118 0 0 chr3 28471588 28471884 -189565274 - AluSg SINE Alu -14 296 1 33 56 0 0 chr3 28472009 28472063 -189565095 + AT_rich Low_complexity Low_complexity 1 54 0 1926 265 35 21 chr3 28472388 28472955 -189564203 + MLT1G LTR MaLR 1 575 -15 836 234 54 0 chr3 28474090 28474274 -189562884 + MER58A DNA MER1_type 31 224 0 255 70 0 93 chr3 28474560 28474603 -189562555 - LTR8 LTR ERV1 0 691 653 2026 224 128 24 chr3 28474603 28475260 -189561898 - MER50 LTR ERV1 0 734 10 * 3001 169 30 81 chr3 28475254 28475958 -189561200 - LTR8 LTR ERV1 -23 668 1 189 308 0 0 chr3 28476598 28476650 -189560508 + L2 LINE L2 3220 3271 -1 257 263 0 38 chr3 28477312 28477392 -189559766 + Charlie7 DNA MER1_type 112 188 -2424 22 0 0 0 chr3 28478401 28478423 -189558735 + AT_rich Low_complexity Low_complexity 1 22 0 222 128 0 0 chr3 28478465 28478504 -189558654 + (CA)n Simple_repeat Simple_repeat 2 40 0 236 253 0 77 chr3 28478823 28478914 -189558244 + Charlie7 DNA MER1_type 112 195 -2417 660 261 143 28 chr3 28478920 28479305 -189557853 + MLT1J2 LTR MaLR 3 446 0 564 295 98 30 chr3 28479378 28479747 -189557411 + Charlie7 DNA MER1_type 283 676 -1936 267 364 65 9 chr3 28480368 28480585 -189556573 - L1ME LINE L1 -298 5823 5595 26 64 0 0 chr3 28480617 28480664 -189556494 + AT_rich Low_complexity Low_complexity 1 47 0 403 207 19 4 chr3 28480722 28480836 -189556322 - L1MC4 LINE L1 0 8042 7883 180 0 0 0 chr3 28482046 28482066 -189555092 + (T)n Simple_repeat Simple_repeat 1 20 0 9302 63 10 114 chr3 28482289 28483837 -189553321 - SVA Other Other 0 1386 1 26 30 0 0 chr3 28483904 28483937 -189553221 + AT_rich Low_complexity Low_complexity 1 33 0 833 276 45 98 chr3 28484271 28484760 -189552398 - MLT1J LTR MaLR -43 468 6 368 254 51 35 chr3 28484770 28484967 -189552191 - HAL1 LINE L1 -254 2253 2054 272 231 15 15 chr3 28485038 28485103 -189552055 + MLT1J LTR MaLR 94 158 -353 238 263 29 88 chr3 28485193 28485330 -189551828 + MLT1J LTR MaLR 383 511 0 2348 107 0 0 chr3 28485572 28485881 -189551277 - AluSg SINE Alu -1 309 1 21 36 0 0 chr3 28485939 28485967 -189551191 + AT_rich Low_complexity Low_complexity 1 28 0 980 189 22 0 chr3 28486507 28486692 -189550466 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr3 28486910 28486934 -189550224 + AT_rich Low_complexity Low_complexity 1 24 0 370 206 0 14 chr3 28487015 28487088 -189550070 - MER52A LTR ERV1 0 1755 1684 * 3742 183 55 93 chr3 28487080 28488324 -189548834 - MER52A LTR ERV1 -559 1196 1 236 370 120 0 chr3 28490188 28490296 -189546862 - L2 LINE L2 -6 3266 3146 398 200 14 21 chr3 28490341 28490481 -189546677 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 12136 168 43 6 chr3 28490655 28492900 -189544258 - L1PBa LINE L1 -4534 2329 3 624 199 9 8 chr3 28492909 28493040 -189544118 - L1P5 LINE L1 -374 6485 6354 347 174 23 0 chr3 28493028 28493114 -189544044 - L1P5 LINE L1 -961 5888 5801 * 8399 251 14 8 chr3 28493133 28495487 -189541671 - L1P5 LINE L1 -1905 4944 2576 322 182 52 0 chr3 28495486 28495563 -189541595 - L1P5 LINE L1 -4681 2168 2088 * 1022 289 111 13 chr3 28495690 28496085 -189541073 + L2 LINE L2 2880 3313 0 417 186 23 124 chr3 28496212 28496341 -189540817 - MLT1H LTR MaLR -51 498 383 4894 221 47 19 chr3 28499246 28500867 -189536291 - L1 LINE L1 -2781 4067 2321 365 206 55 0 chr3 28501036 28501109 -189536049 + MLT1F LTR MaLR 1 77 -465 304 303 55 9 chr3 28501115 28501224 -189535934 + MLT1F LTR MaLR 28 141 -401 218 268 73 12 chr3 28501354 28501436 -189535722 + MIR SINE MIR 58 144 -64 2248 88 15 6 chr3 28501757 28502085 -189535073 - L1PB1 LINE L1 0 6151 5821 4528 233 29 12 chr3 28502230 28503494 -189533664 - L1MDa LINE L1 -1854 4686 3402 926 158 0 0 chr3 28503662 28503826 -189533332 - L1PA15-16 LINE L1 -4497 2352 2189 6182 152 62 11 chr3 28503882 28504955 -189532203 - L1PA15-16 LINE L1 -4830 2019 893 252 343 28 56 chr3 28504998 28505141 -189532017 - MER91C DNA MER1_type 0 140 2 566 258 31 13 chr3 28505435 28505594 -189531564 + MIR SINE MIR 74 235 -27 899 199 49 77 chr3 28505676 28506205 -189530953 - L1MDa LINE L1 -3694 2846 2329 1119 127 6 6 chr3 28506488 28506654 -189530504 - AluSg/x SINE Alu -13 299 134 2285 109 0 0 chr3 28506654 28506956 -189530202 - AluSc SINE Alu -7 302 1 395 228 53 0 chr3 28507187 28507301 -189529857 - L1ME3A LINE L1 -223 5947 5828 391 277 34 6 chr3 28507297 28507512 -189529646 + L1M2 LINE L1 5282 5517 -653 * 952 68 0 0 chr3 28507716 28507834 -189529324 - L1PA7 LINE L1 -8 6146 6029 378 327 171 18 chr3 28507836 28508117 -189529041 + L1ME3A LINE L1 5513 5836 -334 198 167 0 0 chr3 28508614 28508650 -189528508 + T-rich Low_complexity Low_complexity 1 36 0 253 212 15 45 chr3 28509467 28509533 -189527625 + MIR3 SINE MIR 104 167 -41 186 43 0 0 chr3 28509585 28509608 -189527550 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1777 83 6 147 chr3 28509609 28509936 -189527222 - AluSp SINE Alu -32 281 1 328 325 85 32 chr3 28510622 28510810 -189526348 - L1 LINE L1 -2875 3271 3074 186 133 0 0 chr3 28510817 28510847 -189526311 + (CCCCCT)n Simple_repeat Simple_repeat 6 35 0 38 22 0 0 chr3 28510856 28510901 -189526257 + AT_rich Low_complexity Low_complexity 1 45 0 192 79 0 53 chr3 28510931 28510969 -189526189 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 397 291 97 11 chr3 28511188 28511363 -189525795 - MIR SINE MIR -55 207 18 434 158 0 0 chr3 28511848 28511930 -189525228 - L1 LINE L1 -921 5225 5144 705 272 50 7 chr3 28512031 28512310 -189524848 - L1 LINE L1 -2671 3475 3185 9617 223 12 14 chr3 28712941 28716133 -189321025 - L1PA15 LINE L1 0 6165 2947 404 350 45 45 chr3 28716277 28716936 -189320222 + HERVL18 LTR ERVL 1483 1983 -3360 1312 129 0 80 chr3 28716999 28717224 -189319934 + AluSx SINE Alu 1 207 -105 385 342 80 49 chr3 28717318 28718429 -189318729 + HERVL18 LTR ERVL 2314 3616 -2431 297 339 34 43 chr3 28718708 28719035 -189318123 + HERVL18 LTR ERVL 3760 4083 -1260 302 377 7 0 chr3 28719701 28719839 -189317319 + MER4B-int LTR ERV1 5631 5769 -1353 688 360 30 7 chr3 28720206 28720629 -189316529 + MER4B-int LTR ERV1 6256 7297 -452 531 189 0 54 chr3 28720831 28720942 -189316216 + MER4B-int LTR ERV1 5971 6075 -683 385 258 137 8 chr3 28721196 28721320 -189315838 + LTR47A LTR ERVL 261 400 -52 298 315 35 21 chr3 28721590 28721755 -189315403 - MIR SINE MIR -57 205 37 24 0 0 0 chr3 28722487 28722511 -189314647 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr3 28723104 28723131 -189314027 + (TG)n Simple_repeat Simple_repeat 2 28 0 2314 233 114 34 chr3 28724209 28725273 -189311885 - L1MC4a LINE L1 0 8036 6211 9716 194 38 20 chr3 28725559 28728565 -189308593 - L1MA4 LINE L1 -7 6475 3419 445 195 11 22 chr3 28728572 28728617 -189308541 - L1MA4 LINE L1 -4908 420 376 1479 140 171 27 chr3 28728617 28728945 -189308213 + THE1C LTR MaLR 1 375 0 445 195 11 22 chr3 28728945 28729164 -189307994 - L1MA4 LINE L1 -4952 376 1 34 0 0 0 chr3 28729345 28729379 -189307779 + AT_rich Low_complexity Low_complexity 1 34 0 667 293 43 116 chr3 28729440 28729552 -189307606 - LTR16C LTR ERVL -33 458 339 2058 134 30 33 chr3 28729552 28729917 -189307241 + THE1B LTR MaLR 1 364 0 667 293 43 116 chr3 28729917 28730244 -189306914 - LTR16C LTR ERVL -152 339 51 181 336 21 86 chr3 28730972 28731066 -189306092 - L2 LINE L2 0 3313 3229 2600 49 0 0 chr3 28731066 28731370 -189305788 + AluY SINE Alu 1 304 -7 181 336 21 86 chr3 28731370 28731415 -189305743 - L2 LINE L2 -84 3229 3183 2114 81 0 18 chr3 28731787 28732071 -189305087 - AluY SINE Alu -15 296 18 5208 193 25 3 chr3 28732481 28734328 -189302830 + L1PA16 LINE L1 4269 6156 -10 521 222 6 80 chr3 28734611 28734773 -189302385 + MLT1D LTR MaLR 1 150 -355 1278 213 4 12 chr3 28734815 28735069 -189302089 + MLT1D LTR MaLR 252 503 -2 22 56 0 0 chr3 28735256 28735292 -189301866 + AT_rich Low_complexity Low_complexity 1 36 0 571 248 20 13 chr3 28735751 28735900 -189301258 + L1MC4 LINE L1 6862 7011 -1031 324 212 61 0 chr3 28735943 28736042 -189301116 + L1MC4a LINE L1 7137 7241 -567 13588 148 19 19 chr3 28736044 28738417 -189298741 + Tigger1 DNA MER2_type 1 2372 -46 747 240 57 47 chr3 28738518 28738898 -189298260 + L1MC4 LINE L1 7604 8037 -5 362 313 205 40 chr3 28738943 28739066 -189298092 + L1ME3 LINE L1 5476 5577 -585 2218 216 8 31 chr3 28739066 28739580 -189297578 + MLT1D LTR MaLR 1 502 -3 362 313 205 40 chr3 28739580 28739807 -189297351 + L1ME3 LINE L1 5577 5884 -278 26 0 0 0 chr3 28740589 28740615 -189296543 + AT_rich Low_complexity Low_complexity 1 26 0 2310 187 37 0 chr3 28741307 28741714 -189295444 + MSTA LTR MaLR 7 428 0 201 39 0 0 chr3 28741756 28741782 -189295376 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 70 0 0 chr3 28742567 28742610 -189294548 + AT_rich Low_complexity Low_complexity 1 43 0 13722 157 11 21 chr3 28742675 28744335 -189292823 - Tigger1 DNA MER2_type -5 2413 781 204 67 0 0 chr3 28744335 28744365 -189292793 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 13722 157 11 21 chr3 28744365 28745137 -189292021 - Tigger1 DNA MER2_type -1637 781 3 2321 130 25 0 chr3 28745228 28745583 -189291575 + THE1B LTR MaLR 1 364 0 31 44 0 0 chr3 28746507 28746552 -189290606 + AT_rich Low_complexity Low_complexity 1 45 0 515 225 7 94 chr3 28746643 28746781 -189290377 + MLT1E1 LTR MaLR 1 126 -528 266 311 135 14 chr3 28747895 28748043 -189289115 + L2 LINE L2 3147 3312 -1 184 278 103 62 chr3 28748339 28748436 -189288722 - MIR SINE MIR -44 218 118 861 237 0 0 chr3 28749189 28749345 -189287813 + L1MDa LINE L1 20 175 -6365 * 1482 282 83 18 chr3 28749340 28750102 -189287056 + L1M4 LINE L1 4084 4894 -1252 23 0 0 0 chr3 28750110 28750133 -189287025 + AT_rich Low_complexity Low_complexity 1 23 0 397 93 0 0 chr3 28750651 28750705 -189286453 - MSTD LTR MaLR 0 457 404 23 0 0 0 chr3 28750706 28750729 -189286429 + AT_rich Low_complexity Low_complexity 1 23 0 3075 54 0 0 chr3 28750729 28751115 -189286043 - L1PA5 LINE L1 0 6154 5769 3626 21 0 0 chr3 28751117 28751553 -189285605 + L1P LINE L1 4927 5362 -784 1826 181 63 11 chr3 28751553 28751917 -189285241 - MSTD LTR MaLR -13 383 1 298 93 0 0 chr3 28751918 28751961 -189285197 - Charlie5 DNA MER1_type -55 2557 2515 27257 128 13 76 chr3 28751961 28757297 -189279861 - L1P LINE L1 -1149 4997 2 441 271 144 6 chr3 28757337 28757495 -189279663 - MER5A DNA MER1_type -1 188 6 207 313 86 47 chr3 28757498 28757626 -189279532 - MER5A DNA MER1_type -11 178 46 * 228 275 116 43 chr3 28757513 28757651 -189279507 + MER5A DNA MER1_type 36 183 -6 333 0 0 0 chr3 28758022 28758059 -189279099 + (TG)n Simple_repeat Simple_repeat 1 37 0 640 103 32 48 chr3 28758317 28758402 -189278756 + L1PA13 LINE L1 5098 5182 -964 180 0 0 0 chr3 28758402 28758422 -189278736 + (CAA)n Simple_repeat Simple_repeat 2 21 0 640 103 32 48 chr3 28758422 28758462 -189278696 + L1PA13 LINE L1 5182 5221 -925 * 1954 93 5 0 chr3 28758459 28758852 -189278306 + L1PA13 LINE L1 5679 6157 -6 309 111 0 0 chr3 28758857 28758911 -189278247 + L1MA7 LINE L1 6237 6290 -1 1036 231 46 10 chr3 28759326 28759629 -189277529 + L1ME2 LINE L1 5708 6021 -143 281 191 0 96 chr3 28759661 28759755 -189277403 - L1MC4 LINE L1 -1339 6703 6619 231 232 0 53 chr3 28759673 28759768 -189277390 + L1MC4 LINE L1 6614 6703 -1339 * 254 206 14 0 chr3 28759773 28759846 -189277312 + (TA)n Simple_repeat Simple_repeat 1 74 0 227 259 0 24 chr3 28759853 28759938 -189277220 + L1MC4 LINE L1 6614 6696 -1346 369 212 40 30 chr3 28760918 28761017 -189276141 + MIR SINE MIR 90 189 -73 246 156 0 0 chr3 28762351 28762396 -189274762 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 1043 72 7 0 chr3 28762527 28762665 -189274493 - L1PA10 LINE L1 -9 6159 6021 18535 176 29 27 chr3 28763816 28771512 -189265646 + L1MA2 LINE L1 15 7723 0 2724 10 0 16 chr3 28771764 28772078 -189265080 + AluYb8 SINE Alu 1 309 -9 397 382 41 0 chr3 28772179 28772399 -189264759 + MIR SINE MIR 31 259 -3 22 94 0 0 chr3 28772447 28772511 -189264647 + AT_rich Low_complexity Low_complexity 1 64 0 300 322 98 58 chr3 28773553 28773963 -189263195 - L1ME LINE L1 -336 5785 5360 1324 198 68 67 chr3 28774054 28774622 -189262536 - MER67C LTR ERV1 0 514 1 5170 264 31 20 chr3 28775230 28778316 -189258842 + L1PA13 LINE L1 2 3566 -3231 245 339 103 0 chr3 28779053 28779218 -189257940 + MIR SINE MIR 80 261 -1 2058 115 7 3 chr3 28779543 28779847 -189257311 - AluSx SINE Alu -7 305 1 252 0 0 0 chr3 28780041 28780069 -189257089 + (TG)n Simple_repeat Simple_repeat 1 28 0 356 250 29 0 chr3 28780114 28780218 -189256940 - L1ME3A LINE L1 -222 5948 5842 1121 300 109 3 chr3 28780341 28780718 -189256440 + LTR16A LTR ERVL 34 450 0 209 180 20 0 chr3 28781544 28781594 -189255564 + (CA)n Simple_repeat Simple_repeat 2 52 0 281 265 0 59 chr3 28783513 28783581 -189253577 + MLT1J2 LTR MaLR 387 450 0 22 0 0 0 chr3 28783936 28783958 -189253200 + AT_rich Low_complexity Low_complexity 1 22 0 292 306 57 16 chr3 28784208 28784332 -189252826 - L2 LINE L2 0 3313 3185 417 275 119 50 chr3 28784487 28784521 -189252637 - MIR SINE MIR -9 253 223 729 195 97 31 chr3 28784521 28784716 -189252442 + MER3 DNA MER1_type 2 209 0 417 275 119 50 chr3 28784716 28784899 -189252259 - MIR SINE MIR -39 223 21 233 343 0 0 chr3 28785506 28785576 -189251582 + MLT1J LTR MaLR 110 179 -332 189 380 83 0 chr3 28786601 28786709 -189250449 - L2 LINE L2 -5 3267 3151 980 35 28 7 chr3 28787299 28787440 -189249718 + (GAAA)n Simple_repeat Simple_repeat 2 145 0 1144 139 5 45 chr3 28787494 28787695 -189249463 + AluSx SINE Alu 1 193 -119 459 298 0 8 chr3 28787770 28787894 -189249264 - MLT1E LTR MaLR -470 123 1 21 36 0 0 chr3 28790121 28790149 -189247009 + AT_rich Low_complexity Low_complexity 1 28 0 717 293 112 48 chr3 28790515 28791045 -189246113 - MLT1G1 LTR MaLR 0 595 1 21 0 0 0 chr3 28791717 28791738 -189245420 + AT_rich Low_complexity Low_complexity 1 21 0 363 290 148 23 chr3 28792249 28792425 -189244733 + L2 LINE L2 2267 2464 -850 5722 122 4 2 chr3 28792552 28793799 -189243359 - L1PA15 LINE L1 0 6165 4897 1113 177 58 8 chr3 28793799 28794042 -189243116 - L1PA15 LINE L1 -3500 2646 2392 1156 152 22 0 chr3 28794678 28794862 -189242296 - MER6B DNA MER2_type -19 191 4 509 324 89 22 chr3 28797529 28797844 -189239314 + MLT1J1 LTR MaLR 1 336 -110 994 204 95 0 chr3 28798399 28798663 -189238495 + MER33 DNA MER1_type 32 320 -4 193 290 65 0 chr3 28798969 28799031 -189238127 + MIR SINE MIR 81 146 -116 39 0 0 0 chr3 28799867 28799906 -189237252 + AT_rich Low_complexity Low_complexity 1 39 0 491 355 35 27 chr3 28800316 28800572 -189236586 + MIR SINE MIR 5 262 0 563 293 99 9 chr3 28801253 28801485 -189235673 + MIR SINE MIR 9 261 -1 202 320 25 66 chr3 28801520 28801642 -189235516 + L3 LINE CR1 1250 1366 -211 296 307 98 7 chr3 28801681 28801834 -189235324 + MIR SINE MIR 86 252 -10 276 375 19 0 chr3 28801824 28801928 -189235230 - L3 LINE CR1 -27 1550 1445 * 411 276 61 33 chr3 28801984 28802165 -189234993 + MIR SINE MIR 63 248 -14 4042 118 21 6 chr3 28802267 28802893 -189234265 + MER41B LTR ERV1 1 635 0 964 251 7 39 chr3 28802894 28803177 -189233981 + L1M4 LINE L1 1 274 -6268 763 209 32 51 chr3 28803295 28803490 -189233668 + L1M4 LINE L1 3387 3577 -3067 2025 130 7 0 chr3 28803490 28803791 -189233367 + AluSq SINE Alu 1 303 -10 763 209 32 51 chr3 28803791 28803848 -189233310 + L1M4 LINE L1 3577 3634 -3010 29 0 0 0 chr3 28805214 28805243 -189231915 + AT_rich Low_complexity Low_complexity 1 29 0 297 330 26 0 chr3 28807085 28807200 -189229958 - L2 LINE L2 0 3313 3196 327 289 128 22 chr3 28807557 28807737 -189229421 + HAL1 LINE L1 13 211 -2296 608 245 104 61 chr3 28807781 28808320 -189228838 + L1MC5 LINE L1 7330 7891 -70 2293 194 30 10 chr3 28808851 28809355 -189227803 + Charlie5 DNA MER1_type 1 514 -2098 4921 166 83 77 chr3 28809373 28809867 -189227291 + L1MA8 LINE L1 3943 4433 -1858 2164 88 0 7 chr3 28809867 28810185 -189226973 + AluY SINE Alu 1 316 0 4921 166 83 77 chr3 28810185 28810709 -189226449 + L1MA8 LINE L1 4433 4953 -1338 2025 103 4 0 chr3 28810709 28810981 -189226177 + AluSx SINE Alu 1 273 -39 4921 166 83 77 chr3 28810981 28811232 -189225926 + L1MA8 LINE L1 4953 5201 -1090 3051 188 5 2 chr3 28811232 28811807 -189225351 + L1PA16 LINE L1 5581 6157 -9 4921 166 83 77 chr3 28811807 28812401 -189224757 + L1MA8 LINE L1 5201 5814 -477 1070 173 54 15 chr3 28812401 28812661 -189224497 + L1MA8 LINE L1 6019 6288 -3 4400 196 83 8 chr3 28812982 28814815 -189222343 + Charlie5 DNA MER1_type 644 2624 0 551 329 14 19 chr3 28815725 28815935 -189221223 + MLT1J LTR MaLR 1 209 -302 497 333 71 87 chr3 28816895 28816906 -189220252 - L2 LINE L2 -5 3267 3257 333 0 0 0 chr3 28816906 28816943 -189220215 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 497 333 71 87 chr3 28816943 28817309 -189219849 - L2 LINE L2 -15 3257 2896 2158 151 32 17 chr3 28817349 28817760 -189219398 + MER61C LTR ERV1 14 430 -4 260 327 132 59 chr3 28817777 28818355 -189218803 - L2 LINE L2 -449 2865 2246 289 230 43 22 chr3 28818359 28818480 -189218678 + (TA)n Simple_repeat Simple_repeat 1 127 -15 1613 181 57 18 chr3 28818480 28818811 -189218347 + MER7A DNA MER2_type 5 346 0 289 230 43 22 chr3 28818811 28818828 -189218330 + (TA)n Simple_repeat Simple_repeat 127 142 0 210 143 0 0 chr3 28818861 28818896 -189218262 + (CA)n Simple_repeat Simple_repeat 2 36 0 334 214 0 0 chr3 28818914 28818970 -189218188 - MLT1A1 LTR MaLR 0 365 310 327 49 0 0 chr3 28819074 28819115 -189218043 + (CA)n Simple_repeat Simple_repeat 2 42 0 1105 209 50 8 chr3 28819119 28819358 -189217800 - MLT1A1 LTR MaLR 0 365 117 222 315 27 41 chr3 28819438 28819511 -189217647 - L2 LINE L2 0 3313 3242 1370 267 108 109 chr3 28819529 28819934 -189217224 - L2 LINE L2 -228 3085 2681 366 289 11 0 chr3 28819934 28820024 -189217134 + MER81 DNA DNA 15 105 -9 1370 267 108 109 chr3 28820024 28820484 -189216674 - L2 LINE L2 -632 2681 2141 534 329 58 8 chr3 28821006 28821249 -189215909 - L2 LINE L2 -1278 2036 1782 628 93 37 19 chr3 28821253 28821360 -189215798 - L1MC3 LINE L1 -10 7775 7667 22 56 0 0 chr3 28822069 28822105 -189215053 + AT_rich Low_complexity Low_complexity 1 36 0 286 318 36 9 chr3 28823751 28823861 -189213297 + LTR16A LTR ERVL 108 220 -230 239 345 0 0 chr3 28824075 28824159 -189212999 - Charlie8 DNA MER1_type -2217 200 117 188 451 0 0 chr3 28824330 28824432 -189212726 - MIR SINE MIR -115 147 46 382 248 0 45 chr3 28825638 28825771 -189211387 + T-rich Low_complexity Low_complexity 4 130 0 1127 160 0 0 chr3 28826720 28826920 -189210238 + L1PB1 LINE L1 1 200 -6663 14211 193 34 15 chr3 28826922 28832554 -189204604 + L1PB1 LINE L1 636 6510 -357 288 0 0 0 chr3 28832554 28832586 -189204572 + (CA)n Simple_repeat Simple_repeat 2 33 0 14211 193 34 15 chr3 28832586 28832951 -189204207 + L1PB1 LINE L1 6510 6867 0 24 100 0 0 chr3 28833298 28833378 -189203780 + AT_rich Low_complexity Low_complexity 1 80 0 840 217 88 0 chr3 28833399 28833616 -189203542 + L1MB8 LINE L1 5769 6004 -174 1153 95 0 12 chr3 28833624 28833793 -189203365 - MLT2A2 LTR ERVL 0 453 287 1836 159 30 0 chr3 28833837 28834133 -189203025 - MLT2A2 LTR ERVL -148 305 1 3931 161 68 30 chr3 28834182 28835123 -189202035 - MER11C LTR ERVK 0 1071 1 612 156 23 8 chr3 28835125 28835253 -189201905 + L1MB8 LINE L1 6049 6178 0 2313 101 25 189 chr3 28835945 28836517 -189200641 + LTR12 LTR ERV1 5 482 -232 241 298 61 11 chr3 28837116 28837302 -189199856 - L1 LINE L1 -797 5349 5150 2058 195 37 24 chr3 28837329 28837790 -189199368 + L1MB8 LINE L1 5590 6056 -122 195 42 0 0 chr3 28838353 28838377 -189198781 + (T)n Simple_repeat Simple_repeat 1 24 0 473 199 55 165 chr3 28838380 28838700 -189198458 + LTR37A LTR ERV1 87 360 -66 2242 105 3 0 chr3 28838700 28839006 -189198152 - AluSx SINE Alu -5 307 1 473 199 55 165 chr3 28839006 28839067 -189198091 + LTR37A LTR ERV1 360 426 0 1816 159 30 24 chr3 28839584 28839918 -189197240 + MER1B DNA MER1_type 2 337 0 22 56 0 0 chr3 28839944 28839980 -189197178 + AT_rich Low_complexity Low_complexity 1 36 0 300 230 81 0 chr3 28840089 28840176 -189196982 - L1M4 LINE L1 -3799 2347 2254 273 376 141 12 chr3 28840232 28840650 -189196508 + L2 LINE L2 2490 2961 -353 34 0 0 0 chr3 28840837 28840871 -189196287 + AT_rich Low_complexity Low_complexity 1 34 0 226 241 0 0 chr3 28841117 28841175 -189195983 + (TA)n Simple_repeat Simple_repeat 1 58 0 613 159 0 37 chr3 28841401 28841508 -189195650 + FLAM_C SINE Alu 29 131 -12 301 291 89 38 chr3 28841802 28841960 -189195198 + L1ME4a LINE L1 5935 6100 -21 429 280 40 23 chr3 28842261 28842515 -189194643 + L2 LINE L2 1188 1522 -1792 249 333 73 34 chr3 28842751 28842928 -189194230 + L2 LINE L2 796 979 -2335 2206 321 128 21 chr3 28842929 28844483 -189192675 + L2 LINE L2 1593 3313 0 471 286 21 42 chr3 28844822 28845011 -189192147 + MIR SINE MIR 22 206 -56 186 333 10 73 chr3 28845293 28845389 -189191769 - MIR3 SINE MIR -11 197 108 649 0 123 0 chr3 28845402 28845483 -189191675 + L1PA4 LINE L1 6057 6147 -8 324 344 128 6 chr3 28845836 28846016 -189191142 - MIR SINE MIR -55 207 6 643 251 136 15 chr3 28846057 28846256 -189190902 - MER58A DNA MER1_type 0 224 2 1134 182 81 103 chr3 28846257 28846470 -189190688 + LTR37A LTR ERV1 40 241 -185 192 97 0 0 chr3 28846470 28846501 -189190657 + (CA)n Simple_repeat Simple_repeat 2 32 0 1134 182 81 103 chr3 28846501 28846683 -189190475 + LTR37A LTR ERV1 241 426 0 203 186 23 23 chr3 28847192 28847235 -189189923 - L3 LINE CR1 -5 1572 1530 192 135 0 0 chr3 28847241 28847278 -189189880 + (CAA)n Simple_repeat Simple_repeat 3 39 0 351 325 60 15 chr3 28847460 28847610 -189189548 - MIR SINE MIR -48 160 6 321 319 43 17 chr3 28847660 28847776 -189189382 - L3 LINE CR1 -127 1450 1332 5014 85 65 3 chr3 28848682 28849403 -189187755 + MER4E LTR ERV1 1 766 0 6387 113 90 51 chr3 28849403 28850545 -189186613 + MER4E-int LTR ERV1 1 1172 -5586 * 7850 141 78 27 chr3 28850542 28853111 -189184047 + MER4E-int LTR ERV1 1444 3977 -2781 4923 84 5 1 chr3 28853111 28853769 -189183389 + PABL_A LTR ERV1 1 660 0 7850 141 78 27 chr3 28853769 28853885 -189183273 + MER4E-int LTR ERV1 3977 4086 -2672 1720 133 65 19 chr3 28853882 28854489 -189182669 + MER4E-int LTR ERV1 4448 5226 -1532 * 6572 37 0 0 chr3 28854496 28855278 -189181880 + L1PA5 LINE L1 5353 6134 -20 7433 146 67 14 chr3 28855279 28856619 -189180539 + MER4E-int LTR ERV1 5235 6645 -113 198 0 0 0 chr3 28857180 28857202 -189179956 + (T)n Simple_repeat Simple_repeat 1 22 0 5557 71 20 7 chr3 28857482 28858238 -189178920 + MER4E LTR ERV1 1 766 0 797 230 62 81 chr3 28859890 28860325 -189176833 - L1MC5 LINE L1 -53 7908 7482 933 161 0 46 chr3 28860383 28860557 -189176601 + FRAM SINE Alu 1 163 -13 30 27 0 0 chr3 28860740 28860777 -189176381 + AT_rich Low_complexity Low_complexity 1 37 0 34 84 0 0 chr3 28860893 28860976 -189176182 + AT_rich Low_complexity Low_complexity 1 83 0 312 341 60 51 chr3 28861602 28861954 -189175204 - HAL1b LINE L1 -718 630 276 21 0 0 0 chr3 28861955 28861976 -189175182 + AT_rich Low_complexity Low_complexity 1 21 0 1969 289 81 17 chr3 28863229 28864368 -189172790 + L1ME3A LINE L1 4931 6146 -24 22 56 0 0 chr3 28864562 28864598 -189172560 + AT_rich Low_complexity Low_complexity 1 36 0 775 260 79 63 chr3 28864633 28865383 -189171775 + L1M4 LINE L1 2689 3450 -2696 22 56 0 0 chr3 28865714 28865750 -189171408 + AT_rich Low_complexity Low_complexity 1 36 0 334 305 123 44 chr3 28865756 28865821 -189171337 - MIR3 SINE MIR -26 236 178 2555 72 125 5 chr3 28865821 28866221 -189170937 + LTR7 LTR ERV1 1 448 -2 334 305 123 44 chr3 28866221 28866364 -189170794 - MIR3 SINE MIR -84 178 14 996 340 83 29 chr3 28867326 28868026 -189169132 + L1PB4 LINE L1 1 738 -6471 1781 243 42 136 chr3 28868676 28869888 -189167270 + L1PB4 LINE L1 1635 2732 -4476 2636 87 95 7 chr3 28869895 28870307 -189166851 + LTR7 LTR ERV1 1 448 -2 19959 100 17 15 chr3 28870309 28873290 -189163868 + HERVH LTR ERV1 1 2987 -4726 798 159 41 0 chr3 28873284 28873429 -189163729 + HERVH LTR ERV1 3140 3290 -4423 * 3229 123 4 6 chr3 28873419 28873922 -189163236 + HERVH LTR ERV1 3492 3993 -3720 4303 149 0 1 chr3 28873924 28874587 -189162571 + HERVH LTR ERV1 4488 5149 -2564 1406 116 23 0 chr3 28874588 28874803 -189162355 + HERVH LTR ERV1 5600 5819 -1894 * 2199 115 62 13 chr3 28874801 28875175 -189161983 + HERVH LTR ERV1 7322 7713 0 2638 92 95 5 chr3 28875175 28875586 -189161572 + LTR7 LTR ERV1 1 448 -2 941 269 17 7 chr3 28875586 28875876 -189161282 + L1PB4 LINE L1 2732 3024 -4184 1054 250 9 18 chr3 28875979 28876358 -189160800 + L1PB4 LINE L1 2913 3326 -3946 4269 237 26 51 chr3 28876374 28877943 -189159215 + L1PB4 LINE L1 4981 6507 -743 2386 118 75 19 chr3 28877943 28878367 -189158791 - MER4-int LTR ERV1 -229 6369 5922 3943 129 12 70 chr3 28878367 28879110 -189158048 + L1PB4 LINE L1 6518 7217 -1 1541 140 3 83 chr3 28879167 28879530 -189157628 - MER4A LTR ERV1 0 664 261 565 146 10 10 chr3 28879530 28879626 -189157532 - MER4A LTR ERV1 -566 98 3 11000 103 38 18 chr3 28879633 28880686 -189156472 - MER4A-int LTR ERV1 -3 6595 5492 2124 115 3 0 chr3 28880686 28880981 -189156177 - AluSc SINE Alu -13 296 1 11000 103 38 18 chr3 28880981 28881678 -189155480 - MER4A-int LTR ERV1 -1106 5492 4810 2676 120 50 51 chr3 28881694 28882382 -189154776 - MER4A-int LTR ERV1 -5766 832 1 1733 137 161 75 chr3 28882385 28882757 -189154401 - MER4A LTR ERV1 0 664 261 584 162 0 10 chr3 28882757 28882856 -189154302 - MER4A LTR ERV1 -566 98 1 341 329 93 29 chr3 28883004 28883250 -189153908 + MIR SINE MIR 1 262 0 364 176 144 16 chr3 28883919 28883956 -189153202 - L1MD3 LINE L1 0 7995 7964 1911 169 39 23 chr3 28883956 28884340 -189152818 + MLT1B LTR MaLR 1 390 0 364 176 144 16 chr3 28884340 28884427 -189152731 - L1MD3 LINE L1 -31 7964 7855 1507 178 12 27 chr3 28886077 28886336 -189150822 - AluJb SINE Alu -57 255 1 7019 117 39 80 chr3 28886472 28887827 -189149331 - HSMAR2 DNA Mariner -1 1301 2 2340 289 67 53 chr3 28888449 28888734 -189148424 + L1MEc LINE L1 108 387 -6009 225 0 0 0 chr3 28888734 28888759 -189148399 + (GA)n Simple_repeat Simple_repeat 1 25 0 2340 289 67 53 chr3 28888759 28888965 -189148193 + L1MEc LINE L1 387 589 -5807 2075 78 0 65 chr3 28888965 28889273 -189147885 + AluSc SINE Alu 1 288 -21 2340 289 67 53 chr3 28889273 28890464 -189146694 + L1MEc LINE L1 589 1815 -4581 2713 162 29 4 chr3 28890487 28891005 -189146153 - L1MA5 LINE L1 -2 6298 5768 523 239 84 0 chr3 28891037 28891192 -189145966 - L1MEc LINE L1 -4613 1783 1616 * 659 247 58 77 chr3 28891189 28891693 -189145465 + L1MEc LINE L1 1847 2304 -3911 2188 80 0 45 chr3 28891693 28892004 -189145154 - AluSc SINE Alu -11 298 2 659 247 58 77 chr3 28892004 28892055 -189145103 + L1MEc LINE L1 2304 2354 -3861 1305 156 34 0 chr3 28892057 28892262 -189144896 + L1PA14 LINE L1 4 215 -7366 6195 239 19 21 chr3 28892272 28894038 -189143120 + L1PA14 LINE L1 2690 4452 -3132 9459 174 64 6 chr3 28894038 28896604 -189140554 + L1PA14 LINE L1 5000 7596 -3 1943 267 17 37 chr3 28896605 28897434 -189139724 + L1MEc LINE L1 2347 3158 -3057 1334 302 30 21 chr3 28897506 28898162 -189138996 + L1MEc LINE L1 3576 4237 -1978 801 300 10 35 chr3 28899088 28899491 -189137667 + L1M4 LINE L1 3776 4168 -1978 180 0 0 0 chr3 28899717 28899737 -189137421 + (A)n Simple_repeat Simple_repeat 1 20 0 334 381 26 11 chr3 28900027 28900216 -189136942 - L2 LINE L2 -1855 1459 1268 2499 77 0 0 chr3 28900611 28900922 -189136236 - AluY SINE Alu 0 311 1 200 362 76 9 chr3 28901091 28901196 -189135962 - MIR3 SINE MIR -85 123 12 1036 214 65 39 chr3 28902189 28902407 -189134751 + L1MD3 LINE L1 7679 7909 -86 2133 176 8 5 chr3 28902407 28902793 -189134365 - MLT1B LTR MaLR -3 387 1 1036 214 65 39 chr3 28902793 28902883 -189134275 + L1MD3 LINE L1 7909 7995 0 405 328 92 0 chr3 28904192 28904387 -189132771 + MIR SINE MIR 47 259 -3 252 233 0 16 chr3 28905410 28905488 -189131670 + L1MA10 LINE L1 5371 5450 -719 297 175 0 32 chr3 28905490 28905553 -189131605 + L1MEc LINE L1 50 110 -6286 445 247 25 66 chr3 28905555 28905752 -189131406 + L1MA10 LINE L1 5978 6326 -4 858 289 140 7 chr3 28905763 28906185 -189130973 + L1ME3A LINE L1 5433 5910 -260 667 256 29 24 chr3 28906993 28907200 -189129958 - L1MC5 LINE L1 -48 7913 7706 450 103 0 0 chr3 28907313 28907385 -189129773 + L1PA16 LINE L1 5871 5942 -219 232 146 0 24 chr3 28907385 28907426 -189129732 + MER66A LTR ERV1 439 478 0 579 221 5 113 chr3 28907957 28908152 -189129006 - MER20 DNA MER1_type -1 218 45 420 55 0 0 chr3 28909074 28909129 -189128029 + (TG)n Simple_repeat Simple_repeat 1 55 0 1474 265 79 35 chr3 28909574 28909683 -189127475 + L2 LINE L2 1513 1616 -1698 2017 148 9 29 chr3 28909683 28910027 -189127131 - MER1B DNA MER1_type 0 337 1 1474 265 79 35 chr3 28910027 28910461 -189126697 + L2 LINE L2 1616 2080 -1234 1917 174 44 72 chr3 28911035 28911535 -189125623 + MER63 DNA MER1_type 572 1057 -3 396 0 0 0 chr3 28911732 28911776 -189125382 + (TG)n Simple_repeat Simple_repeat 2 45 0 542 296 73 24 chr3 28914224 28914430 -189122728 + MIR SINE MIR 46 261 -1 198 279 0 0 chr3 28914616 28914659 -189122499 + MER5A DNA MER1_type 72 114 -75 259 264 41 137 chr3 28914992 28915189 -189121969 - MER5B DNA MER1_type 0 178 1 321 319 69 0 chr3 28915463 28915579 -189121579 - MIR SINE MIR -66 142 19 579 45 63 9 chr3 28916722 28916833 -189120325 + (TAGA)n Simple_repeat Simple_repeat 3 119 0 2115 98 3 64 chr3 28916925 28917098 -189120060 - AluSx SINE Alu -6 306 161 2309 98 7 0 chr3 28917098 28917405 -189119753 - AluSp SINE Alu -4 309 1 2115 98 3 64 chr3 28917405 28917557 -189119601 - AluSx SINE Alu -151 161 1 23 33 0 0 chr3 28917764 28917794 -189119364 + AT_rich Low_complexity Low_complexity 1 30 0 2018 146 79 22 chr3 28917855 28918258 -189118900 + MSTB LTR MaLR 1 426 0 202 147 73 0 chr3 28918422 28918490 -189118668 + (TA)n Simple_repeat Simple_repeat 1 73 0 25 65 0 0 chr3 28918501 28918547 -189118611 + AT_rich Low_complexity Low_complexity 1 46 0 290 312 0 0 chr3 28918941 28919018 -189118140 - MER58A DNA MER1_type -26 81 5 358 345 58 26 chr3 28919068 28919294 -189117864 - L1MEd LINE L1 -5375 744 512 3204 116 107 16 chr3 28919336 28919886 -189117272 + MER4A LTR ERV1 1 600 0 186 43 0 0 chr3 28919910 28919933 -189117225 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1180 114 11 0 chr3 28919933 28920108 -189117050 - L1PB1 LINE L1 -11 6856 6680 12990 196 44 20 chr3 28920109 28920185 -189116973 - L1PB1 LINE L1 -282 6585 6512 357 24 0 0 chr3 28920185 28920227 -189116931 + (TG)n Simple_repeat Simple_repeat 2 43 0 12990 196 44 20 chr3 28920227 28921638 -189115520 - L1PB1 LINE L1 -355 6512 5137 186 103 0 0 chr3 28921638 28921667 -189115491 + (TTG)n Simple_repeat Simple_repeat 2 30 0 12990 196 44 20 chr3 28921667 28922072 -189115086 - L1PB1 LINE L1 -1730 5137 4743 7037 56 26 0 chr3 28922072 28922946 -189114212 + MER11D LTR ERVK 1 897 0 12990 196 44 20 chr3 28922946 28923437 -189113721 - L1PB1 LINE L1 -2124 4743 4265 2197 103 0 7 chr3 28923437 28923738 -189113420 - AluSx SINE Alu -13 299 1 12990 196 44 20 chr3 28923738 28927005 -189110153 - L1PB1 LINE L1 -2602 4265 636 812 163 108 0 chr3 28927007 28927173 -189109985 - L1PB1 LINE L1 -6663 200 17 189 313 234 19 chr3 28927954 28928037 -189109121 - MIR SINE MIR -1 261 197 844 292 47 35 chr3 28928037 28928438 -189108720 + MLT1I LTR MaLR 1 406 -3 189 313 234 19 chr3 28928438 28928568 -189108590 - MIR SINE MIR -65 197 2 634 261 11 23 chr3 28930237 28930413 -189106745 - MER45A DNA AcHobo 0 178 5 5636 170 32 29 chr3 28930477 28931864 -189105294 - Ricksha DNA DNA -25 3221 1821 827 148 61 8 chr3 28931862 28932034 -189105124 - Ricksha DNA DNA -1185 69 3 * 24 67 0 0 chr3 28933508 28933553 -189103605 + AT_rich Low_complexity Low_complexity 1 45 0 224 275 156 0 chr3 28933567 28933676 -189103482 - L2 LINE L2 -64 3249 3124 233 358 0 55 chr3 28934499 28934608 -189102550 - MIR3 SINE MIR -27 181 79 3272 256 67 61 chr3 28935324 28937626 -189099532 - L1ME2 LINE L1 -6 6158 3871 198 0 0 0 chr3 28937626 28937648 -189099510 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3272 256 67 61 chr3 28937648 28937660 -189099498 - L1ME2 LINE L1 -2293 3871 3861 313 219 0 98 chr3 28937660 28937742 -189099416 - FLAM_A SINE Alu -57 76 3 3272 256 67 61 chr3 28937742 28938307 -189098851 - L1ME2 LINE L1 -2303 3861 3190 249 254 0 0 chr3 28938297 28938368 -189098790 - L1ME LINE L1 -645 5521 5454 * 441 204 146 0 chr3 28938369 28938506 -189098652 - L1ME LINE L1 -756 5410 5254 415 296 132 0 chr3 28938602 28938754 -189098404 + MLT1K LTR MaLR 400 571 -17 569 321 29 41 chr3 28940161 28940404 -189096754 - MIR SINE MIR -3 259 20 22 35 0 0 chr3 28940992 28941021 -189096137 + AT_rich Low_complexity Low_complexity 1 29 0 1509 171 146 34 chr3 28941983 28942368 -189094790 - MSTA LTR MaLR 0 428 1 1242 190 126 26 chr3 28942391 28942701 -189094457 - MER2 DNA MER2_type -1 343 3 235 371 61 15 chr3 28943025 28943157 -189094001 - MIR3 SINE MIR -51 157 20 23 0 0 0 chr3 28943731 28943754 -189093404 + AT_rich Low_complexity Low_complexity 1 23 0 6528 240 82 53 chr3 28943865 28943987 -189093171 - L1MD2 LINE L1 -17 6736 6619 2132 164 80 68 chr3 28943987 28944476 -189092682 - LTR42 LTR ERVL 0 495 1 6528 240 82 53 chr3 28944476 28944722 -189092436 - L1MD2 LINE L1 -134 6619 6381 2167 118 3 10 chr3 28944722 28945035 -189092123 - AluSq SINE Alu -2 311 1 6528 240 82 53 chr3 28945035 28945408 -189091750 - L1MD2 LINE L1 -372 6381 6020 2074 146 0 7 chr3 28945408 28945716 -189091442 - AluSx SINE Alu -1 311 6 6528 240 82 53 chr3 28945716 28947679 -189089479 - L1MD2 LINE L1 -733 6020 4114 2005 146 7 0 chr3 28947679 28947974 -189089184 - AluSx SINE Alu -15 297 1 6528 240 82 53 chr3 28947974 28949318 -189087840 - L1MD2 LINE L1 -2639 4114 2498 1047 193 0 17 chr3 28949318 28949551 -189087607 - L1MA6 LINE L1 -1 6299 6071 6528 240 82 53 chr3 28949551 28950021 -189087137 - L1MD2 LINE L1 -4255 2498 2043 1529 174 65 0 chr3 28950027 28950302 -189086856 + AluJo SINE Alu 1 293 -19 253 351 84 13 chr3 28951303 28951457 -189085701 + L2 LINE L2 3148 3312 -1 1082 250 229 68 chr3 28951486 28952190 -189084968 + L2 LINE L2 1936 2752 -562 555 231 57 90 chr3 28952238 28952468 -189084690 + L1MC5 LINE L1 7609 7826 -135 1540 128 11 7 chr3 28952468 28952742 -189084416 - L1MA4 LINE L1 -6 6294 6020 555 231 57 90 chr3 28952742 28952845 -189084313 + L1MC5 LINE L1 7826 7931 -30 722 315 131 33 chr3 28952846 28953375 -189083783 + L2 LINE L2 2738 3313 0 267 236 100 36 chr3 28954810 28954920 -189082238 - MLT1I LTR MaLR -266 143 27 243 263 0 18 chr3 28954928 28954985 -189082173 - MER2 DNA MER2_type 0 345 290 415 198 37 0 chr3 28954989 28955070 -189082088 - MER2 DNA MER2_type -261 84 1 817 148 0 0 chr3 28955228 28955356 -189081802 + MER31A LTR ERV1 358 485 0 309 217 0 0 chr3 28955875 28955935 -189081223 + MIR SINE MIR 81 140 -122 407 309 1 55 chr3 28956210 28956395 -189080763 - MIR SINE MIR -50 212 38 26 30 0 0 chr3 28956432 28956465 -189080693 + AT_rich Low_complexity Low_complexity 1 33 0 283 313 246 28 chr3 28956631 28956989 -189080169 - L2 LINE L2 0 3313 2878 29 0 0 0 chr3 28957156 28957185 -189079973 + AT_rich Low_complexity Low_complexity 1 29 0 1789 264 69 40 chr3 28957523 28958478 -189078680 + L1ME3 LINE L1 4556 5542 -622 462 238 46 13 chr3 28958519 28958670 -189078488 + L1ME3 LINE L1 5646 5801 -363 485 210 80 56 chr3 28958775 28958937 -189078221 + L1ME3 LINE L1 5845 6010 -152 307 261 102 0 chr3 28960099 28960187 -189076971 - MER5A DNA MER1_type -84 105 9 29 0 0 0 chr3 28960406 28960435 -189076723 + AT_rich Low_complexity Low_complexity 1 29 0 207 184 0 0 chr3 28960468 28960506 -189076652 + (CA)n Simple_repeat Simple_repeat 2 39 0 202 261 21 127 chr3 28961245 28961295 -189075863 - MIR3 SINE MIR -3 205 151 2348 104 21 27 chr3 28961295 28961670 -189075488 + THE1C LTR MaLR 3 375 0 202 261 21 127 chr3 28961670 28961761 -189075397 - MIR3 SINE MIR -57 151 79 1444 258 76 31 chr3 28962478 28962954 -189074204 + MER119 DNA MER1_type 52 548 -35 213 132 0 0 chr3 28964046 28964084 -189073074 + (CA)n Simple_repeat Simple_repeat 2 39 0 218 277 40 28 chr3 28964532 28964670 -189072488 - MIR SINE MIR -56 152 18 248 176 0 129 chr3 28966011 28966096 -189071062 - MIR SINE MIR -61 201 128 189 296 0 0 chr3 28967668 28967712 -189069446 - MER5A DNA MER1_type -124 65 22 39762 60 6 0 chr3 28968410 28974510 -189062648 + L1PA5 LINE L1 11 6146 -8 3085 93 18 9 chr3 28975011 28975451 -189061707 - MLT2A1 LTR ERVL 0 444 1 2694 53 37 0 chr3 28975451 28975825 -189061333 - HERVL-A1 LTR ERVL 0 5654 5267 * 17055 138 12 23 chr3 28975807 28977760 -189059398 + ERVL LTR ERVL 2579 4494 -1270 7493 29 0 1 chr3 28977760 28979396 -189057762 + L1PA4 LINE L1 4534 6168 0 17055 138 12 23 chr3 28979396 28980296 -189056862 + ERVL LTR ERVL 4494 5402 -362 6635 74 5 0 chr3 28980290 28981173 -189055985 - HERVL-A1 LTR ERVL -4767 887 1 * 2643 123 20 27 chr3 28981173 28981212 -189055946 - MLT2A1 LTR ERVL 0 444 406 348 24 0 0 chr3 28981212 28981253 -189055905 + (TA)n Simple_repeat Simple_repeat 2 42 0 2643 123 20 27 chr3 28981253 28981660 -189055498 - MLT2A1 LTR ERVL -38 406 1 364 286 16 16 chr3 28982933 28983059 -189054099 + L1ME LINE L1 5574 5699 -422 759 159 94 0 chr3 28983788 28983989 -189053169 + Charlie5 DNA MER1_type 2400 2619 0 362 313 27 7 chr3 28984168 28984315 -189052843 - MIR SINE MIR -21 241 92 348 222 78 22 chr3 28984958 28985048 -189052110 - L2 LINE L2 -5 3267 3173 687 208 106 106 chr3 28985330 28985478 -189051680 - MER5C DNA MER1_type -2 322 175 9879 30 4 181 chr3 28985478 28987140 -189050018 + SVA Other Other 15 1382 -4 687 208 106 106 chr3 28987140 28987313 -189049845 - MER5C DNA MER1_type -148 176 1 2387 123 5 35 chr3 28988699 28989074 -189048084 + THE1B LTR MaLR 1 364 0 11511 100 6 1 chr3 28989074 28990646 -189046512 + THE1B-int LTR MaLR 1 1580 0 2393 121 5 45 chr3 28990646 28991025 -189046133 + THE1B LTR MaLR 1 364 0 190 370 93 37 chr3 28991291 28991453 -189045705 - L2 LINE L2 -197 3075 2905 273 289 0 21 chr3 28991641 28991738 -189045420 + MLT1L LTR MaLR 152 246 -369 249 300 64 29 chr3 28992522 28992662 -189044496 + L2 LINE L2 2717 2861 -453 1182 259 35 27 chr3 28992914 28993284 -189043874 - MLT1H LTR MaLR -132 417 45 23 33 0 0 chr3 28994845 28994875 -189042283 + AT_rich Low_complexity Low_complexity 1 30 0 2968 162 15 2 chr3 28995120 28995646 -189041512 - MER39B LTR ERV1 0 653 121 297 323 97 19 chr3 28995668 28995823 -189041335 + MIR SINE MIR 91 257 -5 929 225 64 17 chr3 28996504 28996864 -189040294 + Charlie4a DNA MER1_type 49 425 -83 325 188 24 0 chr3 28996914 28996999 -189040159 + GA-rich Low_complexity Low_complexity 2 88 0 183 379 28 64 chr3 28999749 29000031 -189037127 + L2 LINE L2 2239 2510 -804 218 240 21 62 chr3 29000660 29000756 -189036402 - MIR SINE MIR -55 207 116 337 325 120 16 chr3 29001699 29001890 -189035268 - MIR SINE MIR 0 262 52 811 274 16 40 chr3 29002657 29002909 -189034249 + MIR SINE MIR 7 252 -10 2616 151 16 0 chr3 29002916 29003340 -189033818 + MSTB1 LTR MaLR 1 431 -1 1156 169 109 57 chr3 29003829 29004178 -189032980 - MLT1A2 LTR MaLR -7 367 1 1746 176 36 9 chr3 29005053 29005383 -189031775 + MER2 DNA MER2_type 2 340 -5 21 0 0 0 chr3 29005580 29005601 -189031557 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr3 29007432 29007454 -189029704 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 324 314 68 0 chr3 29007924 29008042 -189029116 - MIR SINE MIR -72 190 65 2578 198 26 20 chr3 29008066 29008606 -189028552 + MER67A LTR ERV1 1 543 0 352 324 39 10 chr3 29008718 29008820 -189028338 + L2 LINE L2 3156 3260 -12 22 70 0 0 chr3 29009188 29009231 -189027927 + AT_rich Low_complexity Low_complexity 1 43 0 276 130 0 0 chr3 29009797 29009843 -189027315 + (TG)n Simple_repeat Simple_repeat 2 47 0 243 219 14 0 chr3 29009843 29009916 -189027242 - L1MC4 LINE L1 -1339 6703 6630 225 238 0 0 chr3 29011005 29011047 -189026111 + polypurine Low_complexity Low_complexity 1 42 0 423 143 14 0 chr3 29011133 29011203 -189025955 - LTR3b LTR ERVK -8 492 422 1930 160 41 62 chr3 29011230 29011668 -189025490 - LTR3 LTR ERVK 0 429 1 203 394 0 0 chr3 29012277 29012371 -189024787 - L2 LINE L2 0 3313 3220 263 300 0 0 chr3 29013259 29013309 -189023849 - L3 LINE CR1 -11 1566 1517 342 260 80 23 chr3 29013412 29013696 -189023462 - MLT1H1 LTR MaLR -18 572 161 901 137 15 0 chr3 29013701 29013832 -189023326 - AluSq/x SINE Alu -179 133 1 367 312 51 38 chr3 29013847 29014004 -189023154 - MLT1H1 LTR MaLR -352 203 45 201 353 29 0 chr3 29014324 29014392 -189022766 + L3 LINE CR1 1501 1570 -7 191 264 0 57 chr3 29014640 29014693 -189022465 + L2 LINE L2 3220 3269 -3 24 0 0 0 chr3 29015601 29015625 -189021533 + AT_rich Low_complexity Low_complexity 1 24 0 1783 268 79 34 chr3 29016329 29016587 -189020571 + MLT1E LTR MaLR 1 246 -347 1606 193 46 44 chr3 29016587 29016976 -189020182 - MLT1B LTR MaLR 0 390 1 1783 268 79 34 chr3 29016976 29017284 -189019874 + MLT1E LTR MaLR 246 593 0 335 289 33 11 chr3 29017430 29017520 -189019638 + MIR SINE MIR 14 105 -157 315 0 0 0 chr3 29017793 29017828 -189019330 + (TA)n Simple_repeat Simple_repeat 1 35 0 1991 107 4 0 chr3 29018453 29018723 -189018435 + AluSx SINE Alu 29 299 -13 321 89 0 0 chr3 29019118 29019163 -189017995 + (GA)n Simple_repeat Simple_repeat 1 45 0 310 297 43 43 chr3 29020731 29020869 -189016289 + L1ME3A LINE L1 516 653 -5466 338 279 96 46 chr3 29020924 29021401 -189015757 + L1ME3A LINE L1 757 1257 -4862 236 284 7 74 chr3 29021577 29021725 -189015433 + L1ME3A LINE L1 1409 1546 -4583 916 106 8 0 chr3 29021774 29021906 -189015252 - L1PA15 LINE L1 -2 6163 6031 3534 118 8 0 chr3 29021906 29022422 -189014736 + L1PA15 LINE L1 5509 6028 -137 258 265 88 0 chr3 29022791 29022938 -189014220 + L1ME3A LINE L1 2326 2485 -3644 387 285 39 64 chr3 29023023 29023304 -189013854 + L1ME3A LINE L1 2685 2958 -3171 305 295 58 24 chr3 29023365 29023610 -189013548 + L1ME3A LINE L1 3463 3723 -2406 390 279 128 11 chr3 29023611 29023790 -189013368 + L1ME3A LINE L1 5735 5934 -219 292 331 158 66 chr3 29024336 29024653 -189012505 - L2 LINE L2 0 3272 2927 538 329 135 31 chr3 29024792 29025275 -189011883 - L2 LINE L2 -557 2757 2225 252 86 0 0 chr3 29025745 29025780 -189011378 + (TA)n Simple_repeat Simple_repeat 2 36 0 191 333 81 41 chr3 29026932 29027055 -189010103 - L3 LINE CR1 -1 1576 1449 1204 77 0 18 chr3 29027728 29027896 -189009262 + AluY SINE Alu 147 311 0 366 256 96 16 chr3 29028894 29029019 -189008139 + MER103 DNA DNA 3 137 -29 621 272 6 12 chr3 29030339 29030508 -189006650 + L1MEd LINE L1 4059 4226 -1903 375 23 0 0 chr3 29030514 29030558 -189006600 + (CA)n Simple_repeat Simple_repeat 2 45 0 541 248 59 0 chr3 29030566 29030719 -189006439 - L1M4 LINE L1 -1720 4426 4265 351 0 0 0 chr3 29030722 29030761 -189006397 + (TG)n Simple_repeat Simple_repeat 1 39 0 729 193 0 7 chr3 29030761 29030906 -189006252 + L1MB7 LINE L1 6022 6165 -19 301 336 19 47 chr3 29031031 29031138 -189006020 - L2 LINE L2 -18 3254 3151 1488 188 3 30 chr3 29032968 29033271 -189003887 - AluJb SINE Alu -7 305 11 428 310 22 33 chr3 29033603 29033787 -189003371 + MER5A DNA MER1_type 1 182 -7 439 296 126 13 chr3 29034050 29034280 -189002878 + LTR33A LTR ERVL 264 519 -4 360 236 94 0 chr3 29034385 29034491 -189002667 + MIR SINE MIR 53 168 -94 569 307 34 29 chr3 29034505 29034743 -189002415 + MIR SINE MIR 8 246 -16 183 80 0 0 chr3 29034752 29034777 -189002381 + (CACCAT)n Simple_repeat Simple_repeat 2 26 0 967 311 93 7 chr3 29035449 29035857 -189001301 + L2 LINE L2 2260 2702 -612 633 239 28 22 chr3 29037070 29037250 -188999908 - LTR39 LTR ERV1 -3 780 600 2413 47 0 0 chr3 29037269 29037566 -188999592 + L1PA5 LINE L1 5855 6151 -3 1162 199 50 80 chr3 29037617 29037954 -188999204 - LTR39 LTR ERV1 -456 327 1 1258 186 102 0 chr3 29038069 29038354 -188998804 + MER33 DNA MER1_type 11 324 0 753 193 28 7 chr3 29038750 29038895 -188998263 - MER5A DNA MER1_type -2 187 40 329 293 12 0 chr3 29039049 29039131 -188998027 + MIR SINE MIR 69 151 -57 297 163 139 23 chr3 29039182 29039268 -188997890 + MLT1J LTR MaLR 32 127 -384 265 322 105 23 chr3 29039422 29039593 -188997565 + MLT1J LTR MaLR 312 496 -15 400 293 26 0 chr3 29040636 29040752 -188996406 - MIR SINE MIR -56 152 34 244 265 29 0 chr3 29042164 29042232 -188994926 + MER103 DNA DNA 90 159 -7 1979 165 113 10 chr3 29043379 29043767 -188993391 - MSTA LTR MaLR 0 428 1 629 319 84 31 chr3 29044959 29045342 -188991816 + MLT1J LTR MaLR 73 475 -36 219 239 33 11 chr3 29045729 29045821 -188991337 + (TA)n Simple_repeat Simple_repeat 1 94 0 187 299 13 52 chr3 29045964 29046041 -188991117 + L2 LINE L2 3227 3300 -13 1386 222 121 8 chr3 29046048 29046404 -188990754 - MSTD LTR MaLR 0 396 1 903 181 13 86 chr3 29047747 29047979 -188989179 + MER20 DNA MER1_type 3 217 -2 258 365 47 20 chr3 29048246 29048261 -188988897 - MIR SINE MIR -105 157 144 192 40 0 0 chr3 29048261 29048286 -188988872 + (CAT)n Simple_repeat Simple_repeat 1 25 0 258 365 47 20 chr3 29048286 29048418 -188988740 - MIR SINE MIR -118 144 6 314 269 60 67 chr3 29048488 29048534 -188988624 + MIR SINE MIR 60 105 -157 2605 35 0 6 chr3 29048534 29048845 -188988313 + AluY SINE Alu 1 309 -2 314 269 60 67 chr3 29048845 29048932 -188988226 + MIR SINE MIR 105 192 -70 13058 136 68 22 chr3 29049184 29049732 -188987426 + Tigger1 DNA MER2_type 26 547 -1871 2373 54 0 27 chr3 29049732 29050028 -188987130 - AluY SINE Alu -23 288 1 13058 136 68 22 chr3 29050028 29051767 -188985391 + Tigger1 DNA MER2_type 547 2418 0 303 267 0 40 chr3 29052016 29052117 -188985041 + MLT1L LTR MaLR 204 300 -315 234 260 130 13 chr3 29052284 29052361 -188984797 + MLT1L LTR MaLR 432 517 -98 275 341 98 18 chr3 29052595 29052759 -188984399 + L2 LINE L2 2914 3090 -182 647 289 126 28 chr3 29052783 29053108 -188984050 - MLT1K LTR MaLR -17 571 215 311 354 34 34 chr3 29053479 29053626 -188983532 + L2 LINE L2 3122 3268 -4 42 20 0 0 chr3 29054392 29054441 -188982717 + AT_rich Low_complexity Low_complexity 1 49 0 9644 185 39 14 chr3 29054784 29057152 -188980006 - L1PA15 LINE L1 -2 6163 3722 205 26 26 51 chr3 29057152 29057191 -188979967 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 9644 185 39 14 chr3 29057191 29057878 -188979280 - L1PA15 LINE L1 -2443 3722 3053 21 0 0 0 chr3 29058032 29058053 -188979105 + AT_rich Low_complexity Low_complexity 1 21 0 234 240 29 67 chr3 29058769 29058873 -188978285 + L2 LINE L2 2913 3012 -260 559 255 39 25 chr3 29059158 29059362 -188977796 + MLT1L LTR MaLR 409 615 0 2216 119 0 3 chr3 29059632 29059934 -188977224 - AluSg SINE Alu -9 301 1 339 231 44 22 chr3 29060204 29060295 -188976863 + MLT1G LTR MaLR 1 93 -497 1244 260 44 0 chr3 29060397 29060736 -188976422 + L1ME3A LINE L1 5817 6170 0 204 97 0 0 chr3 29061894 29061925 -188975233 + (T)n Simple_repeat Simple_repeat 1 31 0 327 272 61 22 chr3 29062673 29062901 -188974257 - L1M4 LINE L1 -3369 2777 2541 451 286 9 27 chr3 29062916 29063136 -188974022 - L1M4 LINE L1 -3682 2464 2249 215 200 33 0 chr3 29063175 29063244 -188973914 + (TA)n Simple_repeat Simple_repeat 1 71 0 4386 187 38 9 chr3 29063639 29065170 -188971988 + L1PB4 LINE L1 4581 6155 -1 325 257 178 17 chr3 29065337 29065514 -188971644 + L1PA15 LINE L1 3641 3844 -2302 4724 191 18 9 chr3 29065790 29066755 -188970403 - L1MA8 LINE L1 0 6291 5319 3323 119 4 86 chr3 29066762 29067286 -188969872 - L1MA5A LINE L1 -4 6293 5835 2170 133 0 0 chr3 29067286 29067580 -188969578 + AluSx SINE Alu 1 294 -18 3323 119 4 86 chr3 29067580 29067733 -188969425 - L1MA5A LINE L1 -462 5835 5671 1405 150 90 166 chr3 29067734 29067996 -188969162 + L1 LINE L1 3662 3862 -2284 2891 137 25 6 chr3 29067996 29068472 -188968686 - L1PA14 LINE L1 -3 6158 5674 1405 150 90 166 chr3 29068472 29068756 -188968402 + L1 LINE L1 3862 4166 -1980 * 5672 172 26 9 chr3 29068755 29070361 -188966797 + L1PA15 LINE L1 4533 6163 -2 240 232 12 85 chr3 29070806 29070888 -188966270 + L2 LINE L2 3226 3301 -12 264 323 0 0 chr3 29072067 29072144 -188965014 + MIR SINE MIR 78 155 -53 688 191 166 50 chr3 29072185 29072505 -188964653 - L1MC5 LINE L1 -426 7535 7179 1437 206 60 68 chr3 29072881 29073278 -188963880 - MSTD LTR MaLR 0 396 3 1968 121 50 0 chr3 29073967 29074249 -188962909 + AluSx SINE Alu 1 296 -16 198 200 267 0 chr3 29074376 29074436 -188962722 - L2 LINE L2 0 3313 3238 2061 174 25 28 chr3 29074921 29075318 -188961840 + MSTD LTR MaLR 1 396 0 12254 175 33 6 chr3 29076365 29078460 -188958698 - L1PA15-16 LINE L1 -4696 2153 1 584 116 0 0 chr3 29079206 29079292 -188957866 + AluSc SINE Alu 216 301 -8 258 242 0 32 chr3 29079302 29079364 -188957794 + MER69 DNA AcHobo 36 95 -2431 22 0 0 0 chr3 29079396 29079418 -188957740 + AT_rich Low_complexity Low_complexity 1 22 0 221 364 52 0 chr3 29079558 29079635 -188957523 - MIR SINE MIR -180 82 2 2663 93 3 0 chr3 29079915 29080269 -188956889 - THE1A LTR MaLR 0 355 1 297 243 7 132 chr3 29080824 29080960 -188956198 + L2 LINE L2 3150 3268 -4 6476 151 30 7 chr3 29081438 29082570 -188954588 - Tigger3b DNA MER2_type -1 1230 73 12992 195 75 8 chr3 29082570 29089143 -188948015 - L1PA14 LINE L1 -2 7597 1 448 225 0 0 chr3 29089145 29089225 -188947933 - Tigger3b DNA MER2_type -1150 81 2 576 313 39 0 chr3 29090472 29090654 -188946504 - MIR SINE MIR -16 246 58 962 307 102 21 chr3 29090863 29091293 -188945865 + LTR33A LTR ERVL 59 523 0 236 245 0 0 chr3 29092020 29092069 -188945089 + MER105 DNA DNA 7 55 -149 335 258 129 11 chr3 29092069 29092162 -188944996 + MER5A DNA MER1_type 3 106 -83 2496 65 0 19 chr3 29092213 29092523 -188944635 + AluY SINE Alu 1 304 -7 383 331 30 6 chr3 29092872 29093041 -188944117 + MIR SINE MIR 53 225 -37 22 35 0 0 chr3 29093162 29093191 -188943967 + AT_rich Low_complexity Low_complexity 1 29 0 698 176 206 41 chr3 29093194 29093364 -188943794 - MER20 DNA MER1_type 0 219 22 229 196 0 0 chr3 29095003 29095049 -188942109 + T-rich Low_complexity Low_complexity 3 48 0 732 219 91 91 chr3 29095469 29095798 -188941360 + MER46C DNA MER2_type 5 333 -5 205 290 32 0 chr3 29095806 29095868 -188941290 - MIR SINE MIR -106 156 93 390 299 16 0 chr3 29096041 29096168 -188940990 + MER94 DNA DNA 5 133 -1 196 370 105 25 chr3 29096258 29096458 -188940700 + L2 LINE L2 2894 3109 -163 187 322 100 78 chr3 29096795 29096975 -188940183 + MER5A DNA MER1_type 6 189 0 199 91 23 23 chr3 29097036 29097080 -188940078 + (TTCC)n Simple_repeat Simple_repeat 2 45 0 243 262 24 12 chr3 29097303 29097387 -188939771 + (TTTA)n Simple_repeat Simple_repeat 4 88 0 1162 201 36 52 chr3 29097389 29097718 -188939440 + MER33 DNA MER1_type 1 324 0 190 233 117 17 chr3 29097843 29097903 -188939255 - MER5A DNA MER1_type -84 105 40 870 271 69 3 chr3 29098617 29098905 -188938253 + L1ME3A LINE L1 5680 5986 -184 * 8041 209 36 8 chr3 29098899 29099210 -188937948 + L1MA4A LINE L1 3364 3665 -2638 324 0 0 0 chr3 29099210 29099246 -188937912 + (CA)n Simple_repeat Simple_repeat 1 36 0 8041 209 36 8 chr3 29099246 29101754 -188935404 + L1MA4A LINE L1 3665 6277 -26 969 226 10 5 chr3 29101773 29101977 -188935181 + AluJo SINE Alu 86 290 -22 358 276 51 0 chr3 29102044 29102142 -188935016 + L1ME3A LINE L1 6061 6163 -7 203 385 12 0 chr3 29102736 29102819 -188934339 - L2 LINE L2 0 3313 3230 1943 134 3 0 chr3 29103196 29103480 -188933678 - AluSx SINE Alu -1 311 27 197 379 35 17 chr3 29103724 29103840 -188933318 - L2 LINE L2 -220 3052 2935 231 152 30 30 chr3 29103998 29104064 -188933094 + (TATAA)n Simple_repeat Simple_repeat 1 66 0 4116 154 26 16 chr3 29104166 29104932 -188932226 - L1MA8 LINE L1 -78 7632 6859 2206 185 13 111 chr3 29104929 29105660 -188931498 - L1MA8 LINE L1 -3440 4125 3461 * 1013 221 72 13 chr3 29105668 29105975 -188931183 + L1 LINE L1 2871 3195 -4370 627 185 9 0 chr3 29105986 29106094 -188931064 - FLAM_A SINE Alu -32 110 2 604 204 123 54 chr3 29106097 29106357 -188930801 + L1 LINE L1 3178 3455 -4110 435 116 27 89 chr3 29107119 29107231 -188929927 + L1MA7 LINE L1 6185 6289 -2 25 31 0 0 chr3 29107790 29107822 -188929336 + AT_rich Low_complexity Low_complexity 1 32 0 344 264 58 61 chr3 29108016 29108093 -188929065 + L1 LINE L1 5718 5794 -1771 1554 105 8 29 chr3 29108093 29108290 -188928868 - AluSg SINE Alu 0 322 130 189 0 0 0 chr3 29108290 29108311 -188928847 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1554 105 8 29 chr3 29108311 29108394 -188928764 - AluSg SINE Alu -192 130 47 344 264 58 61 chr3 29108394 29108553 -188928605 + L1 LINE L1 5794 5945 -1620 242 367 25 17 chr3 29108554 29108674 -188928484 + L2 LINE L2 3193 3313 0 756 197 83 31 chr3 29108920 29109113 -188928045 - MER3 DNA MER1_type -1 208 6 765 271 49 0 chr3 29109126 29109329 -188927829 + MER58A DNA MER1_type 1 213 -11 1019 175 0 55 chr3 29110332 29110532 -188926626 + MER5A DNA MER1_type 1 189 0 23 0 0 0 chr3 29110755 29110778 -188926380 + AT_rich Low_complexity Low_complexity 1 23 0 2534 110 28 0 chr3 29110778 29111170 -188925988 - L1MA1 LINE L1 0 6302 5900 343 231 105 70 chr3 29111996 29112139 -188925019 - MIR SINE MIR -50 212 65 828 149 99 9 chr3 29112215 29112297 -188924861 + L1MA9 LINE L1 6067 6140 -172 333 0 0 0 chr3 29112297 29112334 -188924824 + (CA)n Simple_repeat Simple_repeat 2 38 0 828 149 99 9 chr3 29112334 29112491 -188924667 + L1MA9 LINE L1 6140 6310 -2 188 380 25 8 chr3 29112948 29113069 -188924089 - MIR SINE MIR -9 253 131 * 189 229 83 0 chr3 29113067 29113115 -188924043 - L2 LINE L2 0 3313 3262 2175 105 7 20 chr3 29113407 29113712 -188923446 + AluSg SINE Alu 1 301 -9 283 311 92 46 chr3 29113775 29113971 -188923187 - L2 LINE L2 -516 2798 2594 22 35 0 0 chr3 29115336 29115365 -188921793 + AT_rich Low_complexity Low_complexity 1 29 0 2247 105 0 7 chr3 29116946 29117250 -188919908 + AluSg SINE Alu 2 303 -7 5246 157 59 18 chr3 29117974 29119142 -188918016 - L1MA7 LINE L1 0 6291 5077 186 179 0 26 chr3 29119170 29119209 -188917949 + L2 LINE L2 3235 3272 0 359 289 137 32 chr3 29119217 29119407 -188917751 + MIR SINE MIR 22 231 -31 446 174 62 76 chr3 29119867 29120011 -188917147 + L2 LINE L2 3162 3303 -10 206 309 165 0 chr3 29120768 29120865 -188916293 - MIR SINE MIR -18 244 132 2316 81 13 0 chr3 29121068 29121375 -188915783 + AluY SINE Alu 1 311 0 23 0 0 0 chr3 29121543 29121566 -188915592 + AT_rich Low_complexity Low_complexity 1 23 0 1734 150 11 21 chr3 29121777 29122064 -188915094 + AluJb SINE Alu 29 312 0 313 252 55 16 chr3 29122420 29122547 -188914611 - MIR SINE MIR -32 230 99 289 314 103 54 chr3 29123066 29123251 -188913907 - MLT1J LTR MaLR -317 194 1 201 315 41 41 chr3 29124055 29124128 -188913030 + MIR SINE MIR 3 75 -187 251 138 21 149 chr3 29126877 29126971 -188910187 + HAL1 LINE L1 116 197 -2310 344 156 13 13 chr3 29127008 29127085 -188910073 + L1MC4 LINE L1 6992 7068 -974 230 317 131 45 chr3 29127149 29127370 -188909788 + MIR SINE MIR 14 253 -9 23 0 0 0 chr3 29128333 29128356 -188908802 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr3 29128741 29128782 -188908376 + (TG)n Simple_repeat Simple_repeat 2 42 0 630 269 7 0 chr3 29129204 29129349 -188907809 + L2 LINE L2 1846 1991 -1323 606 268 6 19 chr3 29129381 29129538 -188907620 - L1ME2 LINE L1 -27 6137 5983 1526 169 45 29 chr3 29129543 29129856 -188907302 - LTR8 LTR ERV1 0 691 374 8522 184 18 9 chr3 29130542 29132046 -188905112 + L1M1 LINE L1 19 1535 -6030 1453 179 15 52 chr3 29132181 29132505 -188904653 - LTR8 LTR ERV1 -379 312 1 635 292 86 27 chr3 29132588 29133381 -188903777 - L1MCc LINE L1 -4887 1536 1157 2385 303 58 57 chr3 29134156 29134300 -188902858 + L2 LINE L2 1985 2127 -1186 2268 79 3 20 chr3 29134300 29134603 -188902555 - AluSg SINE Alu -12 298 1 2385 303 58 57 chr3 29134603 29135770 -188901388 + L2 LINE L2 2127 3282 -31 491 263 25 0 chr3 29136348 29136466 -188900692 + MIR SINE MIR 71 191 -71 539 119 0 36 chr3 29136847 29136931 -188900227 + L1MA3 LINE L1 1493 1573 -5992 * 10565 194 22 28 chr3 29136930 29138516 -188898642 + L1MA3 LINE L1 2884 4478 -3246 822 217 14 57 chr3 29138516 29138756 -188898402 + AluJb SINE Alu 96 312 0 10565 194 22 28 chr3 29138756 29141971 -188895187 + L1MA3 LINE L1 4478 7724 0 2070 120 10 10 chr3 29142206 29142515 -188894643 - AluSc SINE Alu 0 309 1 514 250 152 18 chr3 29142532 29142696 -188894462 - MER5A DNA MER1_type 0 189 4 651 315 42 12 chr3 29145580 29145821 -188891337 - MIR SINE MIR -2 260 13 1782 156 29 58 chr3 29145921 29146268 -188890890 + MER1B DNA MER1_type 1 337 0 522 304 84 11 chr3 29146536 29146727 -188890431 - MIR SINE MIR -57 205 1 1924 158 0 3 chr3 29146788 29147072 -188890086 - AluSx SINE Alu -29 283 1 1880 256 46 77 chr3 29147072 29147687 -188889471 - MLT1G LTR MaLR 0 590 1 258 344 16 49 chr3 29148453 29148575 -188888583 - L2 LINE L2 -211 3061 2944 315 268 82 10 chr3 29148944 29149041 -188888117 - MER5A DNA MER1_type -77 112 9 275 258 11 43 chr3 29149069 29149162 -188887996 + L2 LINE L2 3168 3257 -15 210 348 54 68 chr3 29150530 29150688 -188886470 + L2 LINE L2 2155 2311 -1003 2323 91 0 0 chr3 29150688 29150986 -188886172 - AluSg SINE Alu -12 298 1 210 348 54 68 chr3 29150986 29151048 -188886110 + L2 LINE L2 2311 2372 -942 6876 68 16 2 chr3 29151083 29152620 -188884538 - L1PA7 LINE L1 0 6154 4600 183 156 0 0 chr3 29152688 29152720 -188884438 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2145 144 0 3 chr3 29152889 29153202 -188883956 - AluSx SINE Alu 0 312 1 211 273 11 57 chr3 29153205 29153293 -188883865 + MIR SINE MIR 153 236 -26 450 153 46 15 chr3 29153529 29153685 -188883473 + MSTD LTR MaLR 1 124 -304 276 30 0 0 chr3 29153698 29153731 -188883427 + (TC)n Simple_repeat Simple_repeat 2 34 0 841 212 28 1 chr3 29153731 29153910 -188883248 + MSTD LTR MaLR 232 396 0 805 136 16 0 chr3 29155361 29155486 -188881672 - FLAM_C SINE Alu -6 127 1 2335 259 46 31 chr3 29156463 29157391 -188879767 + L2 LINE L2 2207 3148 -165 1243 288 121 18 chr3 29157886 29158382 -188878776 - MLT1H LTR MaLR -2 547 1 2549 241 89 6 chr3 29159289 29160185 -188876973 + L1ME1 LINE L1 3627 4597 -1549 1439 230 115 36 chr3 29160198 29160837 -188876321 + L1ME1 LINE L1 5149 5842 -324 219 139 0 0 chr3 29161100 29161136 -188876022 + (T)n Simple_repeat Simple_repeat 1 36 0 231 314 31 69 chr3 29161143 29161302 -188875856 + MIR SINE MIR 102 254 -8 21 36 0 0 chr3 29161311 29161339 -188875819 + AT_rich Low_complexity Low_complexity 1 28 0 2098 138 3 0 chr3 29161501 29161797 -188875361 + AluSx SINE Alu 3 299 -13 214 219 167 35 chr3 29162283 29162397 -188874761 - MIR SINE MIR -56 206 78 311 315 21 21 chr3 29162641 29162780 -188874378 - MIR SINE MIR -65 143 13 6922 61 2 0 chr3 29163020 29164205 -188872953 + L1PA6 LINE L1 4953 6143 -11 21 0 0 0 chr3 29164724 29164745 -188872413 + AT_rich Low_complexity Low_complexity 1 21 0 534 236 115 12 chr3 29165352 29165517 -188871641 - MIR SINE MIR -5 257 76 523 241 9 0 chr3 29165552 29165664 -188871494 + MER58A DNA MER1_type 1 113 0 854 241 25 10 chr3 29165676 29165875 -188871283 - MER58A DNA MER1_type -21 203 2 315 96 0 0 chr3 29166281 29166333 -188870825 + (A)n Simple_repeat Simple_repeat 1 52 0 416 289 58 19 chr3 29166942 29167098 -188870060 - MIR SINE MIR -21 241 80 338 348 32 26 chr3 29167157 29167312 -188869846 + MIR SINE MIR 85 240 -22 547 312 23 28 chr3 29167320 29167535 -188869623 - MIR SINE MIR -11 251 38 1895 156 15 45 chr3 29168537 29168712 -188868446 - Charlie5 DNA MER1_type 0 2624 2445 1896 103 0 60 chr3 29168712 29169051 -188868107 - AluSq SINE Alu 0 321 1 1895 156 15 45 chr3 29169051 29169278 -188867880 - Charlie5 DNA MER1_type -179 2445 2233 661 188 0 0 chr3 29169287 29169404 -188867754 - MER3 DNA MER1_type -42 167 51 27 0 0 0 chr3 29171299 29171326 -188865832 + AT_rich Low_complexity Low_complexity 1 27 0 1741 185 15 9 chr3 29172210 29172551 -188864607 - MER2 DNA MER2_type 0 344 2 243 298 71 36 chr3 29172672 29172756 -188864402 + MIR SINE MIR 31 117 -91 255 61 0 0 chr3 29172990 29173023 -188864135 + (TAA)n Simple_repeat Simple_repeat 3 35 0 21 36 0 0 chr3 29173023 29173051 -188864107 + AT_rich Low_complexity Low_complexity 1 28 0 497 190 55 16 chr3 29173109 29173234 -188863924 - MIR SINE MIR -67 141 40 237 241 17 0 chr3 29174725 29174783 -188862375 + MLT1J1 LTR MaLR 162 220 -310 * 380 286 113 8 chr3 29174780 29174913 -188862245 + MLT1G LTR MaLR 436 582 -8 2207 112 0 0 chr3 29175550 29175845 -188861313 + AluSc SINE Alu 1 295 -14 476 273 71 13 chr3 29175978 29176132 -188861026 + MLT1J2 LTR MaLR 1 163 -287 1103 266 65 41 chr3 29176141 29176664 -188860494 + MLT1E LTR MaLR 2 591 -2 556 261 81 64 chr3 29176693 29176927 -188860231 + MLT1J1 LTR MaLR 198 435 -11 2407 70 0 29 chr3 29177182 29177495 -188859663 - AluY SINE Alu -7 304 1 577 259 77 24 chr3 29177608 29177855 -188859303 + L1ME LINE L1 5550 5809 -312 207 281 16 0 chr3 29177944 29178008 -188859150 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 1586 226 113 26 chr3 29178200 29178661 -188858497 + MLT1D LTR MaLR 1 501 -4 447 254 26 8 chr3 29179020 29179199 -188857959 + MLT1F LTR MaLR 8 274 -281 287 153 306 0 chr3 29179269 29179341 -188857817 + MER63 DNA MER1_type 32 751 -85 233 261 0 0 chr3 29179355 29179401 -188857757 + MER63 DNA MER1_type 990 1035 -25 4913 135 8 30 chr3 29179416 29180217 -188856941 - LTR39 LTR ERV1 0 783 1 483 275 9 0 chr3 29180290 29180399 -188856759 + MLT1F LTR MaLR 361 470 -72 629 332 27 16 chr3 29180979 29181235 -188855923 + MIR SINE MIR 2 260 -2 433 290 68 11 chr3 29182191 29182367 -188854791 - MIR SINE MIR -29 233 48 1462 239 113 11 chr3 29183635 29184111 -188853047 + MLT1H LTR MaLR 19 543 -6 21 36 0 0 chr3 29184926 29184954 -188852204 + AT_rich Low_complexity Low_complexity 1 28 0 31 58 0 0 chr3 29185948 29186000 -188851158 + AT_rich Low_complexity Low_complexity 1 52 0 311 306 20 0 chr3 29186094 29186192 -188850966 + MLT1G LTR MaLR 3 102 -488 303 333 0 9 chr3 29187016 29187121 -188850037 + GA-rich Low_complexity Low_complexity 3 106 0 617 223 0 0 chr3 29187123 29187280 -188849878 + L1PA14 LINE L1 4354 4510 -1636 5959 104 17 2 chr3 29187280 29188450 -188848708 + L1PA14 LINE L1 4969 6156 -5 34 42 0 0 chr3 29188836 29188884 -188848274 + AT_rich Low_complexity Low_complexity 1 48 0 485 210 30 10 chr3 29188951 29189051 -188848107 - MER81 DNA DNA 0 114 13 2443 225 83 55 chr3 29189555 29190381 -188846777 + L1ME2 LINE L1 4682 5484 -680 212 77 26 0 chr3 29190381 29190420 -188846738 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2107 81 0 14 chr3 29190421 29190704 -188846454 - AluY SINE Alu -32 279 1 2443 225 83 55 chr3 29190704 29191285 -188845873 + L1ME2 LINE L1 5483 6140 -24 2425 123 26 21 chr3 29191307 29191731 -188845427 - L1PB2 LINE L1 -2 6149 5724 441 36 0 0 chr3 29192535 29192590 -188844568 + (TA)n Simple_repeat Simple_repeat 2 56 0 468 175 45 19 chr3 29192632 29192786 -188844372 + GA-rich Low_complexity Low_complexity 2 159 0 837 207 79 26 chr3 29192786 29193013 -188844145 + L1MC3 LINE L1 6748 6986 -799 437 272 92 35 chr3 29193039 29193267 -188843891 + L1MC3 LINE L1 7180 7420 -365 1685 129 12 0 chr3 29193298 29193546 -188843612 + AluSg SINE Alu 1 251 -59 1113 212 68 0 chr3 29193546 29193616 -188843542 + AluJo SINE Alu 50 114 -198 198 0 0 0 chr3 29193616 29193638 -188843520 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1113 212 68 0 chr3 29193638 29193797 -188843361 + AluJo SINE Alu 114 295 -17 1437 281 91 43 chr3 29193909 29195023 -188842135 + HAL1 LINE L1 1077 2407 -100 590 305 85 31 chr3 29195139 29195526 -188841632 + L1ME3A LINE L1 5394 5801 -320 2467 30 0 14 chr3 29195575 29195870 -188841288 - AluY SINE Alu -20 291 1 2404 44 10 0 chr3 29197545 29197840 -188839318 + AluY SINE Alu 1 298 -13 2521 65 0 0 chr3 29198325 29198633 -188838525 - AluY SINE Alu -3 308 1 327 281 82 37 chr3 29198742 29198877 -188838281 + L1ME3A LINE L1 6027 6167 -3 438 242 152 67 chr3 29199680 29200081 -188837077 + L1ME4a LINE L1 5681 6115 -6 183 313 88 0 chr3 29200376 29200456 -188836702 - MIR SINE MIR -66 196 110 2262 94 0 13 chr3 29200788 29200808 -188836350 - AluY SINE Alu -6 305 286 255 93 0 0 chr3 29200808 29200851 -188836307 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2262 94 0 13 chr3 29200851 29201139 -188836019 - AluY SINE Alu -25 286 1 314 295 41 16 chr3 29202585 29202707 -188834451 + MLT1I LTR MaLR 18 142 -267 259 234 28 75 chr3 29202867 29202974 -188834184 + MLT1H LTR MaLR 432 533 -16 2218 109 0 10 chr3 29203490 29203794 -188833364 + AluY SINE Alu 1 301 -10 1192 224 38 72 chr3 29205856 29205968 -188831190 - MER69 DNA AcHobo -15 2511 2397 2004 127 21 0 chr3 29205968 29206259 -188830899 + AluSx SINE Alu 1 297 -15 1192 224 38 72 chr3 29206259 29206589 -188830569 - MER69 DNA AcHobo -129 2397 2084 818 251 52 43 chr3 29206589 29206961 -188830197 + MLT1C LTR MaLR 1 460 -7 470 242 81 7 chr3 29206995 29207144 -188830014 - MER69 DNA AcHobo -483 2043 1884 976 291 55 12 chr3 29207184 29207722 -188829436 - MER69 DNA AcHobo -630 596 3 1366 200 53 39 chr3 29207844 29208204 -188828954 - MLT1A1 LTR MaLR 0 365 1 180 393 57 52 chr3 29208226 29208437 -188828721 + L2 LINE L2 2985 3196 -76 4230 297 176 24 chr3 29208515 29210920 -188826238 - L2 LINE L2 0 3313 525 3750 179 13 0 chr3 29210921 29211619 -188825539 + L1P LINE L1 3856 4562 -1584 3536 48 0 0 chr3 29211686 29212121 -188825037 - L1PA3 LINE L1 0 6155 5721 6439 87 6 10 chr3 29212122 29213039 -188824119 + L1PA14 LINE L1 4550 5473 -688 2188 101 3 0 chr3 29213039 29213326 -188823832 + AluSp SINE Alu 1 288 -25 6439 87 6 10 chr3 29213326 29214010 -188823148 + L1PA14 LINE L1 5473 6159 -2 5829 217 13 30 chr3 29214010 29215446 -188821712 + L1 LINE L1 2232 3648 -2498 2062 145 132 5 chr3 29215446 29215826 -188821332 + MSTA LTR MaLR 1 428 0 5829 217 13 30 chr3 29215826 29215883 -188821275 + L1 LINE L1 3648 3704 -2442 5648 232 40 17 chr3 29215881 29216537 -188820621 - L1M2 LINE L1 -2331 4517 3878 * 2158 120 0 3 chr3 29216537 29216845 -188820313 - AluSg SINE Alu -3 307 1 5648 232 40 17 chr3 29216845 29217902 -188819256 - L1M2 LINE L1 -2970 3878 2772 33 56 0 0 chr3 29217961 29218015 -188819143 + AT_rich Low_complexity Low_complexity 1 54 0 242 326 179 5 chr3 29218218 29218402 -188818756 + L3b LINE CR1 1248 1463 -120 236 329 13 0 chr3 29219113 29219192 -188817966 - MIR3 SINE MIR -25 183 104 2798 209 9 13 chr3 29219246 29219791 -188817367 + L1M1 LINE L1 12 554 -7011 * 5506 119 53 7 chr3 29219790 29220695 -188816463 + L1MA3 LINE L1 5359 6305 0 2471 225 30 12 chr3 29221039 29221718 -188815440 - L1 LINE L1 -1190 5192 4502 3652 101 2 10 chr3 29221718 29222233 -188814925 + MER9 LTR ERVK 1 511 0 3366 98 2 4 chr3 29222233 29222690 -188814468 + HERVK9 LTR ERVK 1 456 -5460 11423 46 1 2 chr3 29222791 29224169 -188812989 + HERVK9 LTR ERVK 1411 2786 -3130 15270 71 1 3 chr3 29224169 29226096 -188811062 + HERVK9 LTR ERVK 3711 5634 -282 2319 57 4 0 chr3 29226192 29226473 -188810685 + HERVK9 LTR ERVK 5635 5916 0 3583 100 24 4 chr3 29226473 29226974 -188810184 + MER9 LTR ERVK 1 511 0 391 121 0 0 chr3 29226986 29227044 -188810114 - L1 LINE L1 -1886 4496 4439 * 4615 262 93 14 chr3 29227041 29227472 -188809686 - L1 LINE L1 -2409 3973 3578 2082 147 0 3 chr3 29227472 29227778 -188809380 - AluSg SINE Alu -4 306 2 4615 262 93 14 chr3 29227778 29230104 -188807054 - L1 LINE L1 -2804 3578 972 4905 187 57 16 chr3 29230123 29231879 -188805279 - L1PA15 LINE L1 -13 6868 5041 2248 137 3 8 chr3 29231883 29232249 -188804909 - L1PB1 LINE L1 -4 6147 5784 2778 214 100 7 chr3 29232263 29233843 -188803315 - L1PA15 LINE L1 -4985 1878 7 1591 230 14 0 chr3 29233861 29234226 -188802932 - L1P LINE L1 -1820 5042 4673 1317 255 21 29 chr3 29234232 29234613 -188802545 - L1M3e LINE L1 -4931 2099 1722 944 324 57 18 chr3 29234621 29235063 -188802095 - L1M3e LINE L1 -5682 1355 897 534 319 86 60 chr3 29235079 29235719 -188801439 - L1MEd LINE L1 -5040 1270 594 394 339 74 49 chr3 29235823 29236189 -188800969 - L1MEd LINE L1 -5742 377 3 195 328 15 0 chr3 29236221 29236288 -188800870 - L2 LINE L2 0 3272 3205 228 336 137 29 chr3 29236435 29236750 -188800408 + L2 LINE L2 2438 2786 -528 6895 278 28 39 chr3 29236781 29237886 -188799272 + L1PA13 LINE L1 4 1121 -6463 1716 143 47 75 chr3 29237886 29238272 -188798886 - THE1C LTR MaLR 0 375 1 6895 278 28 39 chr3 29238272 29239439 -188797719 + L1PA13 LINE L1 1121 2300 -5284 1894 136 59 0 chr3 29239439 29239725 -188797433 + AluSx SINE Alu 3 305 -7 6895 278 28 39 chr3 29239725 29242008 -188795150 + L1PA13 LINE L1 2300 5043 -2541 15259 182 103 13 chr3 29242025 29248245 -188788913 + L1PB1 LINE L1 1 6867 0 7112 194 26 30 chr3 29248293 29248998 -188788160 + L1PA13 LINE L1 5051 5758 -1843 2557 58 0 10 chr3 29248998 29249310 -188787848 - AluY SINE Alu -2 309 1 7112 194 26 30 chr3 29249310 29250791 -188786367 + L1PA13 LINE L1 5758 7225 -376 2898 177 34 5 chr3 29250791 29251355 -188785803 + LTR22 LTR ERVK 1 580 0 7112 194 26 30 chr3 29251355 29251731 -188785427 + L1PA13 LINE L1 7225 7601 0 972 181 5 69 chr3 29252087 29252268 -188784890 + MLT1B LTR MaLR 1 167 -223 2325 80 3 13 chr3 29252268 29252580 -188784578 + AluY SINE Alu 1 309 -2 972 181 5 69 chr3 29252580 29252614 -188784544 + MLT1B LTR MaLR 167 202 -188 186 103 0 0 chr3 29252655 29252684 -188784474 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 215 203 14 0 chr3 29252695 29252764 -188784394 + (TA)n Simple_repeat Simple_repeat 2 71 0 235 231 0 0 chr3 29252765 29252820 -188784338 + MLT2C1 LTR ERVL 351 395 -2 266 0 29 0 chr3 29252940 29252974 -188784184 + (CA)n Simple_repeat Simple_repeat 2 36 0 455 290 130 12 chr3 29252974 29253143 -188784015 - MIR SINE MIR -69 193 5 263 273 0 0 chr3 29253190 29253245 -188783913 + L2 LINE L2 3216 3270 -2 1764 152 11 0 chr3 29253745 29254015 -188783143 - AluSx SINE Alu -11 301 29 634 234 0 0 chr3 29255302 29255439 -188781719 + MSTB LTR MaLR 11 147 -279 411 236 189 14 chr3 29255724 29255872 -188781286 + MIR SINE MIR 75 248 -14 375 313 52 0 chr3 29256041 29256156 -188781002 - MER5C DNA MER1_type -202 122 2 680 288 62 0 chr3 29257229 29257472 -188779686 + L1ME LINE L1 5412 5669 -497 5249 155 48 19 chr3 29257610 29258350 -188778808 - L1MA8 LINE L1 -3 7248 6531 2284 113 0 0 chr3 29258350 29258652 -188778506 + AluSq SINE Alu 1 302 -11 5249 155 48 19 chr3 29258652 29259521 -188777637 - L1MA8 LINE L1 -720 6531 5599 4139 228 168 30 chr3 29259527 29261783 -188775375 - L1MA8 LINE L1 -2925 4181 2237 210 71 0 0 chr3 29261783 29261811 -188775347 + (CA)n Simple_repeat Simple_repeat 1 28 0 4139 228 168 30 chr3 29261811 29263498 -188773660 - L1MA8 LINE L1 -4869 2237 7 225 127 18 0 chr3 29264398 29264453 -188772705 + MER96B DNA MER1_type? 115 170 -247 479 307 95 65 chr3 29265984 29266508 -188770650 + L2 LINE L2 1818 2357 -957 207 278 46 87 chr3 29266972 29267145 -188770013 + L2 LINE L2 2899 3064 -208 3575 179 82 62 chr3 29267146 29268000 -188769158 - L1MCa LINE L1 -5524 902 32 489 107 48 0 chr3 29269129 29269213 -188767945 + MSTC LTR MaLR 339 426 -2 3256 207 65 44 chr3 29269219 29270088 -188767070 + L1MC1 LINE L1 1486 2336 -3879 3415 131 26 2 chr3 29270088 29270629 -188766529 + MER41C LTR ERV1 1 554 0 3256 207 65 44 chr3 29270629 29271496 -188765662 + L1MC1 LINE L1 2336 3218 -2997 2057 122 23 3 chr3 29271496 29271799 -188765359 + AluSx SINE Alu 1 309 -3 3256 207 65 44 chr3 29271799 29271892 -188765266 + L1MC1 LINE L1 3218 3308 -2907 4108 222 19 15 chr3 29271901 29272748 -188764410 + MER21B LTR ERV1 3 852 -11 6303 234 21 14 chr3 29272814 29274550 -188762608 + L1MC1 LINE L1 3605 5352 -863 350 206 14 14 chr3 29274553 29274626 -188762532 - Tigger5 DNA MER2_type 0 2323 2251 303 169 13 65 chr3 29274638 29274715 -188762443 - Tigger5 DNA MER2_type 0 2323 2251 258 254 0 0 chr3 29274684 29274739 -188762419 - Tigger5 DNA MER2_type -2268 55 1 * 4053 152 12 24 chr3 29274740 29275703 -188761455 + L1MC1 LINE L1 5355 6377 -25 645 244 82 22 chr3 29276090 29276360 -188760798 - LTR37A LTR ERV1 -33 393 108 798 234 70 0 chr3 29277035 29277236 -188759922 + MER58C DNA MER1_type 1 215 0 250 294 0 0 chr3 29278311 29278379 -188758779 + CT-rich Low_complexity Low_complexity 2 69 0 307 323 131 3 chr3 29278480 29278762 -188758396 + L1ME LINE L1 5501 5818 -303 22 0 0 0 chr3 29278953 29278975 -188758183 + AT_rich Low_complexity Low_complexity 1 22 0 302 218 39 0 chr3 29279288 29279366 -188757792 - L1M4 LINE L1 -3627 2519 2439 2424 89 3 0 chr3 29279919 29280222 -188756936 + AluSp SINE Alu 1 304 -9 417 186 23 124 chr3 29283328 29283457 -188753701 + MLT1H LTR MaLR 383 498 -51 1112 317 100 9 chr3 29283584 29284088 -188753070 - L2 LINE L2 0 3313 2758 398 200 14 21 chr3 29284114 29284254 -188752904 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 236 370 120 0 chr3 29284299 29284407 -188752751 + L2 LINE L2 3146 3266 -6 3742 183 55 93 chr3 29286271 29287515 -188749643 + MER52A LTR ERV1 1 1196 -559 400 208 0 0 chr3 29287507 29287579 -188749579 + MER52A LTR ERV1 1684 1755 0 * 230 172 52 0 chr3 29287649 29287707 -188749451 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 1018 188 16 0 chr3 29287905 29288091 -188749067 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr3 29288631 29288659 -188748499 + AT_rich Low_complexity Low_complexity 1 28 0 2348 107 0 0 chr3 29288717 29289026 -188748132 + AluSg SINE Alu 1 309 -1 238 263 29 88 chr3 29289268 29289405 -188747753 - MLT1J LTR MaLR 0 511 383 272 231 15 15 chr3 29289495 29289560 -188747598 - MLT1J LTR MaLR -353 158 94 368 254 51 35 chr3 29289631 29289828 -188747330 + HAL1 LINE L1 2054 2253 -254 556 285 35 17 chr3 29289838 29290010 -188747148 + MLT1J LTR MaLR 6 180 -331 26 30 0 0 chr3 29290381 29290414 -188746744 + AT_rich Low_complexity Low_complexity 1 33 0 9302 63 10 114 chr3 29290481 29292029 -188745129 + SVA Other Other 1 1386 0 180 0 0 0 chr3 29292252 29292272 -188744886 + (A)n Simple_repeat Simple_repeat 1 20 0 403 207 19 4 chr3 29293486 29293600 -188743558 + L1MC4 LINE L1 7883 8042 0 26 64 0 0 chr3 29293658 29293705 -188743453 + AT_rich Low_complexity Low_complexity 1 47 0 267 364 65 9 chr3 29293737 29293954 -188743204 + L1ME LINE L1 5595 5823 -298 564 295 98 30 chr3 29294892 29295261 -188741897 - Charlie7 DNA MER1_type -1936 676 283 660 261 143 28 chr3 29295334 29295719 -188741439 - MLT1J2 LTR MaLR 0 446 3 236 253 0 77 chr3 29295725 29295816 -188741342 - Charlie7 DNA MER1_type -2417 195 112 222 128 0 0 chr3 29296135 29296174 -188740984 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr3 29296216 29296238 -188740920 + AT_rich Low_complexity Low_complexity 1 22 0 257 263 0 38 chr3 29297247 29297327 -188739831 - Charlie7 DNA MER1_type -2424 188 112 189 308 0 0 chr3 29297990 29298042 -188739116 - L2 LINE L2 -1 3271 3220 3001 169 30 81 chr3 29298682 29299386 -188737772 + LTR8 LTR ERV1 1 668 -23 2026 224 128 24 chr3 29299380 29300037 -188737121 + MER50 LTR ERV1 10 734 0 * 255 70 0 93 chr3 29300037 29300080 -188737078 + LTR8 LTR ERV1 653 691 0 836 234 54 0 chr3 29300367 29300551 -188736607 - MER58A DNA MER1_type 0 224 31 1926 265 35 21 chr3 29301686 29302253 -188734905 - MLT1G LTR MaLR -15 575 1 39 74 0 0 chr3 29302551 29302632 -188734526 + AT_rich Low_complexity Low_complexity 1 81 0 2163 118 0 0 chr3 29302757 29303053 -188734105 + AluSg SINE Alu 1 296 -14 39 22 0 0 chr3 29303151 29303197 -188733961 + AT_rich Low_complexity Low_complexity 1 46 0 2313 87 43 3 chr3 29303588 29303935 -188733223 + L1MA2 LINE L1 5939 6299 -5 299 284 216 8 chr3 29304675 29304809 -188732349 - MIR3 SINE MIR -3 205 44 281 232 14 14 chr3 29304947 29305016 -188732142 + GA-rich Low_complexity Low_complexity 4 72 0 196 157 59 0 chr3 29305032 29305083 -188732075 + GA-rich Low_complexity Low_complexity 4 57 0 633 255 0 14 chr3 29305433 29305574 -188731584 + MLT1I LTR MaLR 270 408 -1 282 305 24 12 chr3 29306330 29306412 -188730746 + L2 LINE L2 3179 3261 -11 1002 298 81 24 chr3 29306521 29306904 -188730254 + MLT1I LTR MaLR 5 409 0 2775 183 34 15 chr3 29307546 29308186 -188728972 - L1MA9 LINE L1 -22 6290 5543 27 49 0 0 chr3 29308577 29308618 -188728540 + AT_rich Low_complexity Low_complexity 1 41 0 327 274 124 65 chr3 29308666 29308876 -188728282 - L1ME LINE L1 -401 5720 5524 2049 130 7 3 chr3 29308876 29309177 -188727981 - AluSg SINE Alu -8 302 1 327 274 124 65 chr3 29309177 29309400 -188727758 - L1ME LINE L1 -597 5524 5261 22 56 0 0 chr3 29309532 29309568 -188727590 + AT_rich Low_complexity Low_complexity 1 36 0 524 274 25 60 chr3 29309709 29309910 -188727248 + MIR SINE MIR 5 198 -64 465 261 71 38 chr3 29310140 29310324 -188726834 - L2 LINE L2 -2 3311 3122 237 368 0 0 chr3 29310419 29310495 -188726663 - MIR SINE MIR -77 185 110 378 281 102 56 chr3 29310697 29310893 -188726265 - L1MC4a LINE L1 -1914 5894 5690 460 341 28 8 chr3 29310899 29311154 -188726004 - MIR SINE MIR 0 262 3 253 128 0 0 chr3 29311209 29311248 -188725910 - L1MC4a LINE L1 -458 5663 5625 386 302 0 10 chr3 29312720 29312816 -188724342 + L2 LINE L2 3197 3291 -22 207 0 0 0 chr3 29312823 29312846 -188724312 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 814 171 18 6 chr3 29312970 29313134 -188724024 + L1MA10 LINE L1 6169 6334 0 213 94 0 0 chr3 29314522 29314554 -188722604 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1105 160 5 0 chr3 29315174 29315368 -188721790 + L1PBa LINE L1 1 195 -6668 9024 186 6 6 chr3 29315373 29318266 -188718892 + L1PBa LINE L1 636 3765 -3097 6403 211 5 6 chr3 29318262 29319709 -188717449 + L1 LINE L1 4457 5902 -960 * 2351 85 9 6 chr3 29319709 29320028 -188717130 + L1PB1 LINE L1 5821 6151 0 218 268 73 12 chr3 29320349 29320431 -188716727 - MIR SINE MIR -64 144 58 304 303 55 9 chr3 29320561 29320670 -188716488 - MLT1F LTR MaLR -401 141 28 358 197 56 0 chr3 29320676 29320747 -188716411 - MLT1F LTR MaLR -465 77 3 229 293 0 61 chr3 29320927 29321009 -188716149 - L2 LINE L2 -6 3307 3231 204 275 0 46 chr3 29321037 29321146 -188716012 + GA-rich Low_complexity Low_complexity 5 108 0 1763 86 6 147 chr3 29321758 29322085 -188715073 + AluSp SINE Alu 1 281 -32 186 43 0 0 chr3 29322086 29322109 -188715049 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 253 212 15 45 chr3 29322161 29322227 -188714931 - MIR3 SINE MIR -41 167 104 198 167 0 0 chr3 29323044 29323080 -188714078 + A-rich Low_complexity Low_complexity 1 36 0 352 319 181 19 chr3 29323577 29323843 -188713315 - L1ME3A LINE L1 -334 5836 5528 676 159 0 53 chr3 29323844 29323976 -188713182 + L1PA10 LINE L1 6035 6159 -9 391 277 34 6 chr3 29324182 29324397 -188712761 - L1ME3A LINE L1 -653 5517 5282 * 395 228 53 0 chr3 29324393 29324507 -188712651 + L1ME3A LINE L1 5828 5947 -223 2285 109 0 0 chr3 29324738 29325040 -188712118 + AluSc SINE Alu 1 302 -7 1119 127 6 6 chr3 29325040 29325206 -188711952 + AluSg/x SINE Alu 134 299 -13 910 198 43 77 chr3 29325489 29326021 -188711137 + L1MDa LINE L1 2638 3155 -3694 566 258 31 13 chr3 29326103 29326262 -188710896 - MIR SINE MIR -27 235 74 276 340 21 56 chr3 29326556 29326700 -188710458 + MER91C DNA MER1_type 2 140 0 9329 151 106 7 chr3 29326743 29328436 -188708722 + L1P4 LINE L1 893 2754 -4095 1199 259 11 6 chr3 29328435 29328790 -188708368 + L1P4 LINE L1 2998 3354 -3495 * 8840 210 30 9 chr3 29328795 29331554 -188705604 + L1P4 LINE L1 3711 6527 -342 607 168 0 53 chr3 29331556 29331669 -188705489 + U6 snRNA snRNA 1 107 0 502 204 27 41 chr3 29331669 29331806 -188705352 + L1PA15 LINE L1 2764 2900 -4681 * 8500 251 13 6 chr3 29331805 29334158 -188703000 + L1PA15 LINE L1 3311 5679 -1905 347 174 23 0 chr3 29334177 29334263 -188702895 + L1PA15 LINE L1 6536 6623 -961 * 618 198 9 8 chr3 29334251 29334382 -188702776 + L1PA15 LINE L1 7089 7220 -374 15385 192 46 16 chr3 29334391 29341048 -188696110 + L1PB2 LINE L1 3 6865 -2 1187 126 0 11 chr3 29341057 29341262 -188695896 + L1PA15 LINE L1 7207 7400 -199 2076 139 0 26 chr3 29341744 29342089 -188695069 + L1PA16 LINE L1 5822 6157 -9 17679 179 55 33 chr3 29342808 29344679 -188692479 + L1 LINE L1 19 1846 -5719 207 0 0 0 chr3 29344679 29344702 -188692456 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 17679 179 55 33 chr3 29344702 29347592 -188689566 + L1 LINE L1 1846 4894 -2671 434 158 0 0 chr3 29347693 29347775 -188689383 + L1 LINE L1 6563 6644 -921 424 291 127 14 chr3 29348260 29348480 -188688678 + MIR SINE MIR 18 262 0 247 326 59 112 chr3 29349311 29349784 -188687374 + L2 LINE L2 2825 3272 0 845 208 25 95 chr3 29349788 29350029 -188687129 - MER58A DNA MER1_type 0 224 1 4448 126 5 23 chr3 29351872 29352618 -188684540 + L1PA15 LINE L1 5426 6158 -7 940 211 10 0 chr3 29353320 29353519 -188683639 + L1MB3 LINE L1 5870 6070 -113 968 181 28 77 chr3 29353645 29353893 -188683265 - L1PA16 LINE L1 0 6166 5931 9136 246 17 42 chr3 29353908 29354870 -188682288 - L1PA13 LINE L1 -2528 4269 3284 401 41 0 0 chr3 29354870 29354919 -188682239 - MADE1 DNA Mariner -31 49 1 9136 246 17 42 chr3 29354919 29356546 -188680612 - L1PA13 LINE L1 -3513 3284 1699 5681 177 32 18 chr3 29356544 29357572 -188679586 - L1PA13 LINE L1 -5744 1043 1 * 21 0 0 0 chr3 29358716 29358737 -188678421 + AT_rich Low_complexity Low_complexity 1 21 0 1370 174 41 10 chr3 29358810 29359103 -188678055 - L1MA9 LINE L1 -22 6290 5989 390 21 0 0 chr3 29359485 29359532 -188677626 + (TG)n Simple_repeat Simple_repeat 1 47 0 27 29 0 0 chr3 29361969 29362003 -188675155 + AT_rich Low_complexity Low_complexity 1 34 0 380 283 118 72 chr3 29362033 29362087 -188675071 - L1ME4a LINE L1 -76 6045 5995 2277 123 33 6 chr3 29362087 29362452 -188674706 + THE1C LTR MaLR 1 375 0 380 283 118 72 chr3 29362452 29362772 -188674386 - L1ME4a LINE L1 -126 5995 5655 493 333 58 60 chr3 29363373 29363805 -188673353 - L2 LINE L2 -68 3245 2815 373 212 104 39 chr3 29363821 29364015 -188673143 + MER58 DNA MER1_type 10 2419 -1 398 287 167 0 chr3 29364026 29364200 -188672958 - L2 LINE L2 -514 2800 2598 246 299 0 28 chr3 29566776 29566883 -188470275 - MLT1E LTR MaLR -489 104 1 315 211 25 111 chr3 29566884 29567083 -188470075 - L1MC/D LINE L1 -2371 5437 5256 2469 77 3 0 chr3 29567141 29567451 -188469707 - AluY SINE Alu 0 311 1 312 27 0 0 chr3 29567490 29567527 -188469631 + (CA)n Simple_repeat Simple_repeat 2 38 0 2511 231 39 13 chr3 29567540 29567594 -188469564 + L1MCa LINE L1 1996 2047 -4379 2018 155 24 3 chr3 29567594 29567929 -188469229 + MER7A DNA MER2_type 4 343 -3 2511 231 39 13 chr3 29567929 29569134 -188468024 + L1MCa LINE L1 2047 3289 -3137 3102 184 10 0 chr3 29569149 29569664 -188467494 + Tigger7 DNA MER2_type 2 521 -212 390 240 0 42 chr3 29569663 29569674 -188467484 + Tigger7 DNA MER2_type 2396 2406 -81 * 1159 170 49 0 chr3 29569674 29569898 -188467260 - MER46A DNA MER2_type 0 236 2 390 240 0 42 chr3 29569898 29569982 -188467176 + Tigger7 DNA MER2_type 2406 2487 0 7651 83 9 10 chr3 29569982 29571836 -188465322 + L1PA7 LINE L1 4288 6154 0 2719 249 43 9 chr3 29571847 29572660 -188464498 + L1MCa LINE L1 3308 4148 -2278 23 54 0 0 chr3 29573715 29573752 -188463406 + AT_rich Low_complexity Low_complexity 1 37 0 511 189 180 0 chr3 29575139 29575250 -188461908 - FLAM_A SINE Alu -2 131 1 283 326 0 76 chr3 29576284 29576416 -188460742 - MER5A DNA MER1_type -24 165 44 2001 178 6 8 chr3 29579249 29579615 -188457543 - MLT1A1 LTR MaLR 0 365 1 337 303 34 109 chr3 29580443 29580618 -188456540 + MIR3 SINE MIR 43 204 -4 359 229 181 9 chr3 29581391 29581496 -188455662 - L2 LINE L2 0 3313 3191 679 229 0 0 chr3 29582091 29582209 -188454949 - FLAM_A SINE Alu -15 118 1 276 293 75 75 chr3 29582275 29582606 -188454552 - L2 LINE L2 -842 2472 2142 29 70 0 0 chr3 29582608 29582665 -188454493 + AT_rich Low_complexity Low_complexity 1 57 0 298 332 74 11 chr3 29583445 29583635 -188453523 - L2 LINE L2 -1378 1936 1735 789 181 51 59 chr3 29583690 29583894 -188453264 + MER33 DNA MER1_type 51 254 -2331 1537 224 34 6 chr3 29583894 29584247 -188452911 - MLT1A1 LTR MaLR 0 365 3 789 181 51 59 chr3 29584247 29584296 -188452862 + MER33 DNA MER1_type 254 302 -22 190 354 13 0 chr3 29586236 29586315 -188450843 - L2 LINE L2 -665 2649 2570 517 186 150 0 chr3 29586395 29586508 -188450650 - FLAM_C SINE Alu -2 131 2 533 284 130 14 chr3 29586572 29586787 -188450371 - MIR SINE MIR -8 254 15 31 26 0 0 chr3 29586868 29586906 -188450252 + AT_rich Low_complexity Low_complexity 1 38 0 2198 103 0 0 chr3 29586906 29587245 -188449913 + AluY SINE Alu 1 339 0 2645 61 0 0 chr3 29587722 29588033 -188449125 + AluY SINE Alu 1 311 0 610 276 65 40 chr3 29588158 29588689 -188448469 - MLT1H LTR MaLR 0 595 1 276 30 0 0 chr3 29588701 29588734 -188448424 + (A)n Simple_repeat Simple_repeat 1 33 0 1980 205 143 72 chr3 29588897 29589768 -188447390 - LTR28 LTR ERV1 0 1020 3 23 54 0 0 chr3 29589775 29589812 -188447346 + AT_rich Low_complexity Low_complexity 1 37 0 378 180 288 14 chr3 29589881 29590020 -188447138 - MIR SINE MIR 0 262 86 180 158 0 0 chr3 29590674 29590712 -188446446 + GA-rich Low_complexity Low_complexity 2 39 0 22 35 0 0 chr3 29592438 29592467 -188444691 + AT_rich Low_complexity Low_complexity 1 29 0 2584 189 44 17 chr3 29592506 29593047 -188444111 - LTR38 LTR ERV1 0 556 1 21 36 0 0 chr3 29593986 29594014 -188443144 + AT_rich Low_complexity Low_complexity 1 28 0 340 288 17 0 chr3 29594261 29594379 -188442779 - MIR SINE MIR -12 250 131 232 349 48 0 chr3 29594881 29594964 -188442194 - L2 LINE L2 -2 3270 3184 584 303 150 57 chr3 29595054 29595183 -188441975 - L2 LINE L2 -645 2669 2553 2665 36 0 3 chr3 29595183 29595490 -188441668 - AluY SINE Alu -5 306 1 584 303 150 57 chr3 29595490 29595779 -188441379 - L2 LINE L2 -761 2553 2212 399 333 55 36 chr3 29597716 29597881 -188439277 + L2 LINE L2 3104 3271 -1 556 325 32 67 chr3 29598144 29598520 -188438638 + L1M4c LINE L1 414 776 -5527 2772 262 46 23 chr3 29598715 29599847 -188437311 + L1M4c LINE L1 777 1825 -4516 7091 124 26 44 chr3 29599910 29600776 -188436382 + L1PA11 LINE L1 4046 4926 -1248 2156 110 0 0 chr3 29600776 29601080 -188436078 + AluSg SINE Alu 1 304 0 7091 124 26 44 chr3 29601080 29601537 -188435621 + L1PA11 LINE L1 4926 5390 -784 2223 133 0 0 chr3 29601537 29601838 -188435320 - AluSq SINE Alu -12 301 1 1511 58 39 10 chr3 29601844 29602051 -188435107 - L1PA7 LINE L1 -1 6153 5941 7091 124 26 44 chr3 29602051 29602879 -188434279 + L1PA11 LINE L1 5395 6174 0 6486 234 41 19 chr3 29602896 29603734 -188433424 + L1M4c LINE L1 2013 2831 -3551 255 103 0 0 chr3 29603734 29603773 -188433385 + (CA)n Simple_repeat Simple_repeat 2 40 0 6486 234 41 19 chr3 29603773 29604109 -188433049 + L1M4c LINE L1 2831 3158 -3224 1376 174 4 4 chr3 29604109 29604345 -188432813 + MER46A DNA MER2_type 1 236 0 6486 234 41 19 chr3 29604345 29605405 -188431753 + L1M4c LINE L1 3158 4299 -2083 929 228 25 5 chr3 29606411 29606613 -188430545 + MER3 DNA MER1_type 4 209 0 2002 141 3 0 chr3 29606651 29606948 -188430210 - AluSx SINE Alu -14 298 1 1030 306 49 82 chr3 29607154 29607681 -188429477 - MLT2E LTR ERVL -118 510 1 7266 230 64 77 chr3 29608942 29609034 -188428124 + L1M2 LINE L1 82 174 -6674 1953 141 52 47 chr3 29609034 29609396 -188427762 - THE1B LTR MaLR 0 364 1 11114 101 20 4 chr3 29609396 29610951 -188426207 - THE1B-int LTR MaLR 0 1580 1 2322 131 5 32 chr3 29610951 29611325 -188425833 - THE1B LTR MaLR 0 364 1 7266 230 64 77 chr3 29611325 29612802 -188424356 + L1M2 LINE L1 172 1667 -5181 297 0 0 0 chr3 29612802 29612835 -188424323 + (CA)n Simple_repeat Simple_repeat 2 34 0 7266 230 64 77 chr3 29612835 29613536 -188423622 + L1M2 LINE L1 1667 2376 -4472 1803 132 57 48 chr3 29613536 29613908 -188423250 - THE1C LTR MaLR 0 375 1 7266 230 64 77 chr3 29613908 29615169 -188421989 + L1M2 LINE L1 2376 3572 -3276 321 26 0 0 chr3 29615173 29615211 -188421947 + (TG)n Simple_repeat Simple_repeat 1 38 0 209 179 48 0 chr3 29615219 29615303 -188421855 + (TA)n Simple_repeat Simple_repeat 1 88 0 1532 82 5 0 chr3 29615303 29615511 -188421647 - L1P5 LINE L1 -360 5791 5583 852 277 89 15 chr3 29615630 29616024 -188421134 + L1MC4a LINE L1 5525 5947 -1861 26 82 0 0 chr3 29616187 29616248 -188420910 + AT_rich Low_complexity Low_complexity 1 61 0 40341 33 18 2 chr3 29616306 29622338 -188414820 - L1PA2 LINE L1 0 6155 1 378 266 28 28 chr3 29622343 29622486 -188414672 - L1ME LINE L1 -377 5744 5602 586 324 72 52 chr3 29623671 29624072 -188413086 + LTR16C LTR ERVL 73 481 -10 528 288 33 84 chr3 29624928 29625202 -188411956 + MLT1J LTR MaLR 7 266 -245 448 222 40 0 chr3 29625696 29625795 -188411363 - MIR SINE MIR -61 201 99 198 359 39 31 chr3 29627445 29627573 -188409585 + MIR3 SINE MIR 31 159 -49 968 177 70 0 chr3 29627944 29627987 -188409171 + MER3 DNA MER1_type 5 60 -149 319 239 132 44 chr3 29627987 29628146 -188409012 - MER3 DNA MER1_type 0 209 37 314 280 0 32 chr3 29628836 29628929 -188408229 - L1MC4 LINE L1 -1339 6703 6614 459 63 84 21 chr3 29628933 29629076 -188408082 + (TA)n Simple_repeat Simple_repeat 1 152 0 281 303 28 84 chr3 29629309 29629367 -188407791 - MIR3 SINE MIR -40 168 108 1338 186 70 0 chr3 29629367 29629668 -188407490 + MER33 DNA MER1_type 3 324 0 281 303 28 84 chr3 29629668 29629751 -188407407 - MIR3 SINE MIR -100 108 35 865 100 0 90 chr3 29629882 29630082 -188407076 + AluSg SINE Alu 39 220 -90 216 0 0 0 chr3 29630166 29630190 -188406968 + (A)n Simple_repeat Simple_repeat 1 24 0 32 0 0 0 chr3 29630241 29630273 -188406885 + AT_rich Low_complexity Low_complexity 1 32 0 43 101 0 0 chr3 29630719 29630798 -188406360 + AT_rich Low_complexity Low_complexity 1 79 0 980 128 0 4 chr3 29631521 29631772 -188405386 + (TA)n Simple_repeat Simple_repeat 1 250 0 234 0 0 0 chr3 29631771 29631797 -188405361 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 535 299 13 28 chr3 29631800 29631884 -188405274 + L1ME LINE L1 5086 5170 -992 1611 170 3 27 chr3 29631884 29632184 -188404974 + AluJb SINE Alu 1 293 -19 535 299 13 28 chr3 29632184 29632570 -188404588 + L1ME LINE L1 5170 5550 -612 1077 152 0 34 chr3 29632855 29633033 -188404125 + FRAM SINE Alu 1 164 -12 25 0 0 0 chr3 29633263 29633288 -188403870 + AT_rich Low_complexity Low_complexity 1 25 0 600 221 52 29 chr3 29633884 29634093 -188403065 + LTR41 LTR ERVL 1 244 -551 496 196 20 131 chr3 29634280 29634479 -188402679 + LTR41 LTR ERVL 496 672 -101 336 188 21 52 chr3 29634565 29634661 -188402497 + LTR41 LTR ERVL 675 767 -6 343 306 115 6 chr3 29636173 29636276 -188400882 + MIR SINE MIR 37 164 -98 2498 170 12 0 chr3 29636276 29636699 -188400459 - MSTA LTR MaLR 0 428 1 343 306 115 6 chr3 29636699 29636752 -188400406 + MIR SINE MIR 164 210 -52 530 92 0 13 chr3 29636836 29636912 -188400246 - MADE1 DNA Mariner -5 75 1 597 248 87 34 chr3 29637150 29637356 -188399802 - L1ME3A LINE L1 -11 6159 5943 433 294 56 7 chr3 29637405 29637548 -188399610 - L2 LINE L2 -5 3308 3159 295 297 14 22 chr3 29637927 29638065 -188399093 + MER103 DNA DNA 10 146 -20 923 131 0 7 chr3 29638154 29638299 -188398859 - MER39 LTR ERV1 0 707 564 600 232 114 29 chr3 29638293 29638618 -188398540 - MER39 LTR ERV1 -272 435 1 * 724 251 94 0 chr3 29639946 29640137 -188397021 + MER63A DNA MER1_type 2 210 0 231 277 235 8 chr3 29640288 29640407 -188396751 - Charlie8 DNA MER1_type -2138 279 134 266 311 135 14 chr3 29641231 29641379 -188395779 + L2 LINE L2 3147 3312 -1 184 278 103 62 chr3 29641675 29641772 -188395386 - MIR SINE MIR -44 218 118 1507 108 33 11 chr3 29642145 29642468 -188394690 - L1P5 LINE L1 -628 5523 5196 312 293 150 15 chr3 29642938 29643071 -188394087 - MIR SINE MIR -25 237 87 427 194 5 1 chr3 29643377 29643464 -188393694 - MLT1E2 LTR MaLR 0 626 504 396 250 73 0 chr3 29643465 29643585 -188393573 - MLT1E2 LTR MaLR -125 380 228 2501 83 123 5 chr3 29643594 29643993 -188393165 + LTR7 LTR ERV1 3 448 -2 620 114 0 0 chr3 29643995 29644083 -188393075 + HERVH LTR ERV1 1 88 -7625 * 14847 91 8 22 chr3 29644076 29646287 -188390871 + HERVH LTR ERV1 817 2995 -4718 6000 101 1 2 chr3 29646266 29647121 -188390037 + HERVH LTR ERV1 3140 3993 -3720 * 4445 133 1 3 chr3 29647123 29647786 -188389372 + HERVH LTR ERV1 4488 5149 -2564 1333 123 38 0 chr3 29647787 29647999 -188389159 + HERVH LTR ERV1 5600 5819 -1894 * 2426 87 50 16 chr3 29647997 29648375 -188388783 + HERVH LTR ERV1 7322 7712 -1 10791 178 56 22 chr3 29648588 29652042 -188385116 + L1MA4A LINE L1 2648 6228 -75 2000 124 17 3 chr3 29652042 29652341 -188384817 - AluSp SINE Alu -10 303 1 10791 178 56 22 chr3 29652341 29652413 -188384745 + L1MA4A LINE L1 6228 6296 -7 456 199 74 48 chr3 29652658 29652825 -188384333 - MIR SINE MIR -46 216 45 1041 70 0 7 chr3 29652920 29653062 -188384096 - L1PA7 LINE L1 -134 6020 5880 2166 164 35 35 chr3 29654611 29655068 -188382090 + MSTB2 LTR MaLR 1 457 0 924 153 5 48 chr3 29655831 29656020 -188381138 - L1PA3 LINE L1 0 6155 5975 1059 291 43 76 chr3 29656818 29657551 -188379607 + L2 LINE L2 2541 3253 -60 376 280 10 20 chr3 29657790 29657890 -188379268 + L2 LINE L2 3215 3313 0 22 35 0 0 chr3 29658279 29658308 -188378850 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 29659494 29659526 -188377632 + AT_rich Low_complexity Low_complexity 1 32 0 2216 178 20 0 chr3 29659793 29660187 -188376971 - Tigger1 DNA MER2_type 0 2418 2017 * 8025 153 32 24 chr3 29660179 29661602 -188375556 - Tigger1 DNA MER2_type -976 1442 8 1356 248 56 50 chr3 29662329 29662829 -188374329 - MLT1D LTR MaLR 0 505 3 356 271 84 54 chr3 29662970 29663136 -188374022 - MIR SINE MIR -76 186 16 605 238 93 6 chr3 29663235 29663407 -188373751 - MER5A DNA MER1_type 0 189 3 704 173 30 6 chr3 29663519 29663687 -188373471 + GA-rich Low_complexity Low_complexity 1 172 0 283 239 15 30 chr3 29663753 29663820 -188373338 - MIR SINE MIR -96 112 47 231 114 0 0 chr3 29665876 29665911 -188371247 + (CAT)n Simple_repeat Simple_repeat 2 36 0 399 285 123 17 chr3 29665970 29666149 -188371009 - MIR SINE MIR -3 259 62 537 278 7 7 chr3 29666211 29666362 -188370796 + MER5B DNA MER1_type 26 176 -2 422 256 8 26 chr3 29667340 29667457 -188369701 - L2 LINE L2 0 3313 3199 27 0 0 0 chr3 29668817 29668844 -188368314 + AT_rich Low_complexity Low_complexity 1 27 0 755 262 51 65 chr3 29669173 29669509 -188367649 - MLT1I LTR MaLR -8 401 71 523 178 101 28 chr3 29669802 29670007 -188367151 - MER106B DNA MER1_type -6 1053 12 420 311 25 78 chr3 29670211 29670455 -188366703 + MIR SINE MIR 2 232 -30 563 216 159 0 chr3 29670852 29670947 -188366211 - L1 LINE L1 -2822 3324 3245 243 0 0 0 chr3 29670947 29670974 -188366184 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 563 216 159 0 chr3 29670974 29671123 -188366035 - L1 LINE L1 -2901 3245 3041 1948 81 4 4 chr3 29671127 29671374 -188365784 + AluSg SINE Alu 50 296 -14 21 0 0 0 chr3 29671410 29671431 -188365727 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr3 29673380 29673406 -188363752 + (GA)n Simple_repeat Simple_repeat 1 26 0 2304 90 3 0 chr3 29674110 29674410 -188362748 - AluSc SINE Alu -8 301 1 394 245 57 19 chr3 29678585 29678691 -188358467 + MER91B DNA MER1_type 11 120 -70 4645 115 22 0 chr3 29678716 29679385 -188357773 - LTR12 LTR ERV1 0 688 5 2437 185 46 24 chr3 29679401 29679990 -188357168 - pTR5 LTR ERV1 -1094 1344 743 248 320 58 19 chr3 29679993 29680096 -188357062 + MER91B DNA MER1_type 83 189 -1 290 179 164 0 chr3 29680472 29680539 -188356619 - MER116 DNA Mariner -1 79 2 23 33 0 0 chr3 29680567 29680597 -188356561 + AT_rich Low_complexity Low_complexity 1 30 0 582 224 106 12 chr3 29680597 29680758 -188356400 + MER58C DNA MER1_type 40 215 0 198 0 0 0 chr3 29681764 29681786 -188355372 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 330 324 25 28 chr3 29682280 29682458 -188354700 - MER5A DNA MER1_type -3 186 1 180 380 92 5 chr3 29682531 29682715 -188354443 + L2 LINE L2 1917 2116 -1198 757 226 164 5 chr3 29682804 29683012 -188354146 + MIR SINE MIR 15 255 -7 591 337 129 30 chr3 29683023 29683984 -188353174 + L2 LINE L2 2211 3272 0 26 0 0 0 chr3 29684093 29684119 -188353039 + AT_rich Low_complexity Low_complexity 1 26 0 7128 14 0 7 chr3 29684125 29684952 -188352206 - L1PA3 LINE L1 0 6155 5335 * 11655 30 1 2 chr3 29684949 29686358 -188350800 + L1P LINE L1 3965 5371 -775 374 301 51 45 chr3 29686730 29686906 -188350252 - MIR3 SINE MIR -13 195 19 728 120 40 32 chr3 29687412 29687537 -188349621 + THE1B LTR MaLR 1 126 -238 30572 105 8 11 chr3 29687561 29693273 -188343885 - L1PA7 LINE L1 -14 6455 748 1469 136 41 21 chr3 29693274 29693517 -188343641 + THE1B LTR MaLR 117 364 0 11269 113 2 2 chr3 29693517 29695097 -188342061 + THE1B-int LTR MaLR 1 1580 0 1588 115 37 34 chr3 29695099 29695368 -188341790 + THE1B LTR MaLR 3 272 -92 182 364 17 59 chr3 29695668 29695786 -188341372 + MIR3 SINE MIR 15 127 -81 27 0 0 0 chr3 29697758 29697785 -188339373 + AT_rich Low_complexity Low_complexity 1 27 0 1792 179 0 3 chr3 29698598 29698930 -188338228 + AluJb SINE Alu 1 331 0 1295 264 32 14 chr3 29699004 29699348 -188337810 + LTR16A LTR ERVL 92 441 -9 232 342 54 18 chr3 29700652 29700763 -188336395 - L2 LINE L2 0 3272 3158 609 276 85 51 chr3 29701234 29701528 -188335630 + MLT1J1 LTR MaLR 126 429 -17 21 0 0 0 chr3 29701815 29701836 -188335322 + AT_rich Low_complexity Low_complexity 1 21 0 5821 159 37 4 chr3 29702905 29704529 -188332629 - L1MA5 LINE L1 -13 6287 4608 2229 185 33 31 chr3 29704525 29705039 -188332119 - L1MA5 LINE L1 -2327 3819 3305 * 294 154 96 0 chr3 29705039 29705091 -188332067 - AluS SINE Alu -246 57 1 21 36 0 0 chr3 29705303 29705331 -188331827 + AT_rich Low_complexity Low_complexity 1 28 0 285 334 151 30 chr3 29705711 29706211 -188330947 - L2 LINE L2 -5 3308 2672 243 315 40 27 chr3 29706215 29706364 -188330794 + L1MEd LINE L1 3 153 -5966 312 285 65 0 chr3 29706817 29706940 -188330218 + L1MEd LINE L1 702 832 -5287 1218 201 35 50 chr3 29707103 29707386 -188329772 + AluJo SINE Alu 11 289 -23 974 277 129 22 chr3 29707388 29707582 -188329576 + L1M4 LINE L1 4078 4250 -1896 2228 114 0 0 chr3 29707582 29707881 -188329277 + AluSq SINE Alu 1 299 -14 974 277 129 22 chr3 29707881 29708571 -188328587 + L1M4 LINE L1 4250 5055 -1091 613 114 0 0 chr3 29708606 29708694 -188328464 + AluY SINE Alu 3 90 -221 265 152 22 0 chr3 29708825 29708871 -188328287 + THE1A LTR MaLR 309 355 0 27 0 0 0 chr3 29709450 29709477 -188327681 + AT_rich Low_complexity Low_complexity 1 27 0 194 0 0 37 chr3 29709534 29709561 -188327597 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1809 166 0 3 chr3 29709563 29709852 -188327306 - AluSx SINE Alu -24 288 1 250 216 0 0 chr3 29711347 29711398 -188325760 + L1M4 LINE L1 3980 4030 -2116 * 3733 192 133 97 chr3 29711396 29712167 -188324991 + L1MC3 LINE L1 6310 7251 -534 313 289 0 21 chr3 29712167 29712264 -188324894 + MLT1F1 LTR MaLR 37 131 -436 3733 192 133 97 chr3 29712264 29712813 -188324345 + L1MC3 LINE L1 7251 7778 -7 1558 149 202 15 chr3 29712840 29713182 -188323976 - MSTA LTR MaLR -21 407 2 2543 229 101 11 chr3 29713187 29714000 -188323158 + L1MC4a LINE L1 6967 7808 0 209 398 16 31 chr3 29716552 29716618 -188320540 + L2 LINE L2 3147 3212 -60 2133 105 0 30 chr3 29716618 29716914 -188320244 - AluSq SINE Alu -26 287 1 209 398 16 31 chr3 29716914 29716975 -188320183 + L2 LINE L2 3212 3272 0 204 40 0 0 chr3 29717058 29717083 -188320075 + (TG)n Simple_repeat Simple_repeat 1 25 0 253 208 0 62 chr3 29717121 29717217 -188319941 + L1MC4 LINE L1 6614 6703 -1339 22 56 0 0 chr3 29717292 29717328 -188319830 + AT_rich Low_complexity Low_complexity 1 36 0 4550 211 46 8 chr3 29717944 29718908 -188318250 + L1PA15-16 LINE L1 734 1685 -5164 5610 277 63 64 chr3 29719032 29719846 -188317312 - L1M1 LINE L1 -4052 2680 1867 1791 152 24 0 chr3 29719846 29720136 -188317022 - AluSx SINE Alu -15 297 1 5610 277 63 64 chr3 29720136 29722359 -188314799 - L1M1 LINE L1 -4865 1867 17 1149 297 34 34 chr3 29722370 29722980 -188314178 - L1M3de LINE L1 -5600 1053 2 28 29 0 0 chr3 29723072 29723107 -188314051 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 29723173 29723197 -188313961 + AT_rich Low_complexity Low_complexity 1 24 0 492 280 91 39 chr3 29723471 29723778 -188313380 - L1ME LINE L1 -446 5675 5353 11446 26 9 0 chr3 29724014 29725412 -188311746 - L1P LINE L1 -732 5399 3989 6684 35 0 5 chr3 29725412 29726214 -188310944 + L1PA3 LINE L1 5356 6155 0 4195 198 33 8 chr3 29726265 29727194 -188309964 + L1MA9 LINE L1 4280 5232 -914 3691 176 42 29 chr3 29727199 29727797 -188309361 + L1MA9 LINE L1 5436 6050 -262 2075 128 0 7 chr3 29727797 29728094 -188309064 + AluSx SINE Alu 1 295 -17 3691 176 42 29 chr3 29728094 29728354 -188308804 + L1MA9 LINE L1 6050 6305 -7 1261 205 49 92 chr3 29728382 29728850 -188308308 - LTR7 LTR ERV1 -1 449 2 2246 85 3 17 chr3 29730199 29730493 -188306665 + AluSp SINE Alu 1 290 -23 1312 264 99 36 chr3 29730542 29731098 -188306060 + MER97a DNA MER1_type? 9 599 -295 530 244 168 5 chr3 29731191 29731400 -188305758 - LTR16A1 LTR ERVL -214 243 1 449 234 37 90 chr3 29731506 29731694 -188305464 + MLT1D LTR MaLR 48 225 -280 985 73 0 15 chr3 29731696 29731833 -188305325 - LTR7 LTR ERV1 -2 448 314 1973 138 33 25 chr3 29732115 29732476 -188304682 - THE1B LTR MaLR 0 364 1 6797 105 1 5 chr3 29732476 29733402 -188303756 - THE1B-int LTR MaLR 0 1580 659 28 48 0 0 chr3 29733810 29733852 -188303306 + AT_rich Low_complexity Low_complexity 1 42 0 885 195 6 0 chr3 29733984 29734143 -188303015 + AluJb SINE Alu 140 299 -13 318 138 86 0 chr3 29734481 29734539 -188302619 - AluSp/q SINE Alu -4 299 237 7498 218 23 10 chr3 29734647 29737375 -188299783 + L1PA15-16 LINE L1 1684 4460 -2389 18028 156 34 16 chr3 29737385 29739739 -188297419 + L1PB1 LINE L1 3 2314 -4553 5969 52 31 23 chr3 29739739 29740513 -188296645 - LTR17 LTR ERV1 0 780 1 18028 156 34 16 chr3 29740513 29743167 -188293991 + L1PB1 LINE L1 2314 4920 -1947 189 0 0 0 chr3 29743167 29743188 -188293970 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 18028 156 34 16 chr3 29743188 29743803 -188293355 + L1PB1 LINE L1 4920 5523 -1344 2480 76 0 0 chr3 29743803 29744104 -188293054 + AluSq SINE Alu 1 301 -12 18028 156 34 16 chr3 29744104 29744946 -188292212 + L1PB1 LINE L1 5523 6591 -276 321 26 0 0 chr3 29744946 29744984 -188292174 + (CA)n Simple_repeat Simple_repeat 1 38 0 18028 156 34 16 chr3 29744984 29745265 -188291893 + L1PB1 LINE L1 6591 6866 -1 2616 209 3 44 chr3 29745243 29745460 -188291698 + L1MA7 LINE L1 4444 4668 -2194 * 2156 110 7 0 chr3 29745460 29745750 -188291408 + AluSg SINE Alu 1 292 -18 2616 209 3 44 chr3 29745750 29746168 -188290990 + L1MA7 LINE L1 4668 5053 -1809 3433 157 33 42 chr3 29746168 29746902 -188290256 + L1MA7 LINE L1 6280 7006 -1 407 312 52 23 chr3 29747006 29747179 -188289979 - MIR3 SINE MIR -8 200 23 22 0 0 0 chr3 29747626 29747648 -188289510 + AT_rich Low_complexity Low_complexity 1 22 0 959 235 73 34 chr3 29747704 29747910 -188289248 - L1ME LINE L1 -468 5696 5471 387 56 0 0 chr3 29747910 29747964 -188289194 + (TG)n Simple_repeat Simple_repeat 2 55 0 959 235 73 34 chr3 29747964 29748085 -188289073 - L1ME LINE L1 -693 5471 5356 691 296 28 6 chr3 29748089 29748315 -188288843 + L1ME1 LINE L1 5945 6334 0 2341 183 46 39 chr3 29748533 29748988 -188288170 - L1MB8 LINE L1 -12 6166 5705 1279 210 52 39 chr3 29748988 29749373 -188287785 - MLT1B LTR MaLR 0 390 1 2341 183 46 39 chr3 29749373 29749503 -188287655 - L1MB8 LINE L1 -473 5705 5577 * 5491 249 63 67 chr3 29749502 29751138 -188286020 + MLT1A1-int LTR MaLR 107 1735 0 1054 237 7 106 chr3 29751139 29751544 -188285614 + MLT1A1 LTR MaLR 1 365 0 231 178 33 33 chr3 29751556 29751646 -188285512 - L1M4 LINE L1 -2912 4045 3956 3079 253 83 7 chr3 29751687 29752494 -188284664 - L1M4 LINE L1 -5558 1301 434 410 360 61 32 chr3 29753212 29753490 -188283668 + L2 LINE L2 2574 2859 -455 441 36 0 0 chr3 29754698 29754712 -188282446 + (TG)n Simple_repeat Simple_repeat 1 69 0 441 36 0 0 chr3 29754712 29754767 -188282391 + (TG)n Simple_repeat Simple_repeat 2 56 0 203 337 22 22 chr3 29754948 29755037 -188282121 + L2 LINE L2 3174 3262 -10 235 204 0 0 chr3 29755522 29755566 -188281592 - L2 LINE L2 0 3272 3229 235 236 69 42 chr3 29757234 29757306 -188279852 - L2 LINE L2 -16 3256 3183 291 294 134 17 chr3 29757508 29757627 -188279531 - MIR SINE MIR -13 249 117 21 0 0 0 chr3 29757717 29757738 -188279420 + AT_rich Low_complexity Low_complexity 1 21 0 864 260 38 60 chr3 29758064 29758510 -188278648 - L1MC4 LINE L1 -484 7558 7123 1628 253 75 17 chr3 29758511 29759508 -188277650 + L1ME2 LINE L1 1882 2921 -3294 668 219 109 99 chr3 29759520 29759803 -188277355 + L1ME2 LINE L1 5566 5851 -384 731 236 34 0 chr3 29759850 29760028 -188277130 + L1ME2 LINE L1 5850 6033 -200 340 322 98 6 chr3 29760286 29760469 -188276689 - L1 LINE L1 -1779 4367 4168 515 332 10 5 chr3 29760771 29760964 -188276194 - MIR SINE MIR -56 206 13 1350 269 152 30 chr3 29761010 29761535 -188275623 - MLT1G1 LTR MaLR -6 589 1 957 215 114 20 chr3 29761589 29761892 -188275266 - MSTD LTR MaLR 0 396 38 236 342 13 13 chr3 29761973 29761987 -188275171 + MER5A DNA MER1_type 110 123 -66 2036 131 41 0 chr3 29761987 29762278 -188274880 - AluSx SINE Alu -9 303 1 236 342 13 13 chr3 29762278 29762342 -188274816 + MER5A DNA MER1_type 122 188 -1 187 373 0 0 chr3 29762344 29762419 -188274739 - MIR3 SINE MIR -49 159 85 25 0 0 0 chr3 29763317 29763342 -188273816 + AT_rich Low_complexity Low_complexity 1 25 0 282 143 0 0 chr3 29765510 29765559 -188271599 + (TG)n Simple_repeat Simple_repeat 2 50 0 651 247 18 0 chr3 29766624 29766794 -188270364 - MER5B DNA MER1_type -1 177 5 4092 199 52 24 chr3 29766919 29767888 -188269270 + L1MC3 LINE L1 6005 7000 -785 1146 204 54 57 chr3 29767911 29768245 -188268913 + L1MC3 LINE L1 7135 7467 -318 * 1401 263 12 14 chr3 29768243 29768589 -188268569 + L1MA7 LINE L1 2 346 -5935 450 321 24 12 chr3 29768636 29768806 -188268352 - L1M3f LINE L1 -4780 570 374 1758 280 35 3 chr3 29768983 29770204 -188266954 + L1MA7 LINE L1 857 2177 -4174 520 257 61 42 chr3 29770330 29770619 -188266539 + L1M4c LINE L1 2041 2344 -4038 * 8170 189 51 33 chr3 29770603 29772529 -188264629 + L1MA7 LINE L1 3504 5494 -1001 2378 118 11 32 chr3 29772529 29772901 -188264257 - THE1B LTR MaLR 0 364 1 8170 189 51 33 chr3 29772901 29773919 -188263239 + L1MA7 LINE L1 5494 6493 -2 877 246 70 0 chr3 29773960 29774261 -188262897 + L1MC3 LINE L1 7452 7773 -12 3097 174 25 0 chr3 29774442 29774972 -188262186 - MER6A DNA MER2_type -1 604 62 46 19 0 0 chr3 29774972 29775025 -188262133 + AT_rich Low_complexity Low_complexity 1 53 0 1779 237 31 34 chr3 29775947 29776582 -188260576 - L1M4c LINE L1 -3453 3395 2771 4224 201 22 16 chr3 29776582 29777637 -188259521 + L1M4c LINE L1 3373 4433 -2415 411 275 18 48 chr3 29778439 29778606 -188258552 - L2 LINE L2 0 3313 3152 250 338 103 31 chr3 29778812 29779102 -188258056 - L2 LINE L2 -728 2586 2276 26 74 0 0 chr3 29779356 29779410 -188257748 + AT_rich Low_complexity Low_complexity 1 54 0 2056 65 0 4 chr3 29779763 29780025 -188257133 + AluY SINE Alu 41 301 -10 2072 92 4 0 chr3 29780127 29780389 -188256769 + AluSp SINE Alu 1 263 -50 23 0 0 0 chr3 29780734 29780757 -188256401 + AT_rich Low_complexity Low_complexity 1 23 0 735 316 77 10 chr3 29780826 29781136 -188256022 + LTR16A LTR ERVL 120 450 0 2186 89 0 24 chr3 29781168 29781459 -188255699 + AluSx SINE Alu 1 284 -28 219 69 0 0 chr3 29782379 29782408 -188254750 + (TG)n Simple_repeat Simple_repeat 1 29 0 235 136 23 0 chr3 29784608 29784652 -188252506 + MER39 LTR ERV1 1 45 -662 * 256 169 0 68 chr3 29784649 29784708 -188252450 + MER34 LTR ERV1 68 122 -420 * 1189 200 67 13 chr3 29784679 29785078 -188252080 + MER39 LTR ERV1 257 707 0 440 279 61 77 chr3 29785106 29785353 -188251805 + MLT1J LTR MaLR 212 454 -57 2421 61 0 0 chr3 29786482 29786779 -188250379 + AluY SINE Alu 1 297 -14 330 26 0 0 chr3 29787823 29787862 -188249296 + (CA)n Simple_repeat Simple_repeat 2 40 0 4882 222 47 11 chr3 29787864 29789375 -188247783 + L1M4c LINE L1 2206 3775 -2607 * 5198 74 8 9 chr3 29789373 29790269 -188246889 + L1PA7 LINE L1 5059 5957 -197 1910 174 90 37 chr3 29790269 29790734 -188246424 + LTR2B LTR ERV1 1 490 0 1412 83 5 0 chr3 29790734 29790926 -188246232 + L1PA7 LINE L1 5954 6146 -8 292 314 19 0 chr3 29791175 29791280 -188245878 + L3b LINE CR1 1320 1426 -157 1470 258 108 29 chr3 29791427 29792122 -188245036 + MER20B DNA MER1_type 4 753 -30 30 0 0 0 chr3 29793368 29793398 -188243760 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 29794588 29794610 -188242548 + AT_rich Low_complexity Low_complexity 1 22 0 268 62 0 0 chr3 29794639 29794671 -188242487 + (A)n Simple_repeat Simple_repeat 1 32 0 21 82 0 0 chr3 29796068 29796117 -188241041 + AT_rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr3 29796249 29796270 -188240888 + (A)n Simple_repeat Simple_repeat 1 21 0 23 54 0 0 chr3 29796916 29796953 -188240205 + AT_rich Low_complexity Low_complexity 1 37 0 2270 187 46 6 chr3 29797234 29797711 -188239447 + L1MC3 LINE L1 7290 7785 0 232 303 0 15 chr3 29797950 29798016 -188239142 - L2 LINE L2 -5 3308 3244 261 282 99 0 chr3 29798110 29798181 -188238977 + L2 LINE L2 3220 3297 -16 363 249 171 39 chr3 29798224 29798405 -188238753 - MIR SINE MIR -38 224 20 32 26 0 0 chr3 29798411 29798450 -188238708 + AT_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr3 29799439 29799467 -188237691 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 396 208 0 0 chr3 29799776 29799872 -188237286 + (TG)n Simple_repeat Simple_repeat 2 97 0 268 191 111 0 chr3 29800312 29800375 -188236783 + MER115 DNA AcHobo 616 685 -8 2257 97 0 7 chr3 29801036 29801335 -188235823 - AluSg SINE Alu -13 297 1 2172 114 0 7 chr3 29801335 29801641 -188235517 - AluSx SINE Alu -8 304 1 992 220 0 0 chr3 29802965 29803151 -188234007 - MER5A DNA MER1_type -1 188 3 453 230 18 26 chr3 29803263 29803376 -188233782 + MER81 DNA DNA 3 114 0 2306 107 3 0 chr3 29803442 29803751 -188233407 - AluSx SINE Alu -2 310 1 209 200 20 0 chr3 29807320 29807370 -188229788 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 294 325 50 0 chr3 29808708 29808828 -188228330 - MIR SINE MIR -74 188 63 190 333 83 0 chr3 29809207 29809291 -188227867 + L2 LINE L2 2694 2784 -530 3998 212 49 30 chr3 29809291 29811322 -188225836 + L1MB7 LINE L1 4049 6161 -23 22 0 0 0 chr3 29811622 29811644 -188225514 + AT_rich Low_complexity Low_complexity 1 22 0 426 294 0 16 chr3 29811886 29812012 -188225146 - FLAM_A SINE Alu -9 124 1 184 0 97 0 chr3 29812279 29812310 -188224848 + T-rich Low_complexity Low_complexity 2 35 0 3508 102 30 26 chr3 29812601 29813167 -188223991 + LTR24B LTR ERV1 1 568 -8 714 74 0 0 chr3 29813246 29813341 -188223817 - AluY SINE Alu -4 307 213 341 205 12 36 chr3 29814791 29814874 -188222284 - MIR SINE MIR -28 234 154 328 298 107 49 chr3 29814875 29815080 -188222078 - MIR SINE MIR -41 221 5 275 292 21 21 chr3 29815302 29815398 -188221760 + GA-rich Low_complexity Low_complexity 1 96 0 21 57 0 0 chr3 29815509 29815544 -188221614 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr3 29815552 29815594 -188221564 + AT_rich Low_complexity Low_complexity 1 42 0 1528 201 128 38 chr3 29815753 29816205 -188220953 - MLT1D LTR MaLR 0 505 13 27 49 0 0 chr3 29816424 29816465 -188220693 + AT_rich Low_complexity Low_complexity 1 41 0 278 312 127 41 chr3 29816468 29817125 -188220033 + HAL1b LINE L1 47 775 -573 1982 156 57 23 chr3 29817125 29817477 -188219681 + THE1B LTR MaLR 1 364 0 278 312 127 41 chr3 29817477 29817553 -188219605 + HAL1b LINE L1 775 843 -505 207 69 0 0 chr3 29817948 29817977 -188219181 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 226 336 112 0 chr3 29818084 29818191 -188218967 + MIR SINE MIR 25 143 -65 21 0 0 0 chr3 29818370 29818391 -188218767 + AT_rich Low_complexity Low_complexity 1 21 0 1891 167 11 30 chr3 29818457 29818828 -188218330 - THE1B LTR MaLR 0 364 1 180 252 75 75 chr3 29818991 29819098 -188218060 - L2 LINE L2 0 3272 3166 272 321 12 0 chr3 29819390 29819474 -188217684 + GA-rich Low_complexity Low_complexity 3 87 0 16058 60 1 0 chr3 29820320 29822761 -188214397 + L1PA4 LINE L1 1 2443 -3703 8564 40 0 1 chr3 29822761 29824585 -188212573 + L1PA4 LINE L1 4321 6148 -7 21 36 0 0 chr3 29824591 29824619 -188212539 + AT_rich Low_complexity Low_complexity 1 28 0 942 194 75 9 chr3 29825973 29826376 -188210782 - L1MC/D LINE L1 -758 5806 5484 638 260 16 0 chr3 29826368 29826560 -188210598 - L1MC/D LINE L1 -1287 5277 5083 * 1794 181 40 3 chr3 29826560 29826886 -188210272 + Tigger7 DNA MER2_type 4 341 -392 630 240 7 7 chr3 29826884 29827030 -188210128 + Tigger7 DNA MER2_type 2439 2584 -3 * 1737 255 25 18 chr3 29827031 29827659 -188209499 - L1MC/D LINE L1 -1498 5066 4434 * 2105 227 90 48 chr3 29827653 29828521 -188208637 - L1MCa LINE L1 -5189 892 10 22 56 0 0 chr3 29828872 29828908 -188208250 + AT_rich Low_complexity Low_complexity 1 36 0 338 359 54 5 chr3 29830182 29830366 -188206792 + MLT1K LTR MaLR 102 294 -294 2439 249 44 8 chr3 29831109 29832059 -188205099 - L1M4 LINE L1 -2342 3804 2821 1969 164 42 33 chr3 29832324 29832871 -188204287 - MLT2A2 LTR ERVL 0 554 1 1768 211 38 34 chr3 29832871 29833373 -188203785 + L1ME1 LINE L1 5579 6082 -84 2474 101 93 5 chr3 29833373 29833780 -188203378 - LTR7 LTR ERV1 -7 443 1 7728 91 28 5 chr3 29833780 29834939 -188202219 - HERVH LTR ERV1 0 7713 6529 3893 75 11 49 chr3 29834912 29835548 -188201610 - HERVH LTR ERV1 -1333 6380 5769 * 1223 95 6 0 chr3 29835544 29835723 -188201435 - HERVH LTR ERV1 -3046 4667 4488 * 3214 111 2 6 chr3 29835725 29836229 -188200929 - HERVH LTR ERV1 -3720 3993 3492 898 109 27 0 chr3 29836219 29836366 -188200792 - HERVH LTR ERV1 -4423 3290 3140 * 10252 103 5 12 chr3 29836345 29837944 -188199214 - HERVH LTR ERV1 -4718 2995 1409 551 88 0 0 chr3 29837931 29838011 -188199147 - HERVH LTR ERV1 -7633 80 1 * 2521 103 100 5 chr3 29838013 29838422 -188198736 - LTR7 LTR ERV1 -2 448 1 335 223 29 0 chr3 29838425 29838528 -188198630 + L1MA10 LINE L1 6228 6333 -1 25 51 0 0 chr3 29838604 29838643 -188198515 + AT_rich Low_complexity Low_complexity 1 39 0 575 274 67 79 chr3 29838643 29839136 -188198022 - L1MC4a LINE L1 -1893 5915 5429 520 146 10 0 chr3 29839385 29839481 -188197677 + MLT1B LTR MaLR 56 152 -238 * 542 176 0 9 chr3 29839473 29839581 -188197577 + MLT1B LTR MaLR 67 173 -217 933 156 0 0 chr3 29839584 29839725 -188197433 + FRAM SINE Alu 31 171 -5 896 171 39 49 chr3 29839762 29839795 -188197363 + MLT1B LTR MaLR 188 220 -170 4005 136 60 35 chr3 29839795 29840555 -188196603 - MER4E LTR ERV1 0 779 1 896 171 39 49 chr3 29840555 29840726 -188196432 + MLT1B LTR MaLR 220 390 0 600 262 99 0 chr3 29840969 29841141 -188196017 + MER5A DNA MER1_type 1 189 0 416 305 99 33 chr3 29841282 29841495 -188195663 + MIR SINE MIR 13 239 -23 7674 104 122 87 chr3 29841592 29843233 -188193925 - pTR5 LTR ERV1 0 2438 741 12742 149 58 1 chr3 29843377 29845665 -188191493 + Tigger1 DNA MER2_type 1 2418 0 489 306 25 15 chr3 29845767 29845963 -188191195 + MLT1J2 LTR MaLR 2 199 -251 31 0 0 0 chr3 29846187 29846218 -188190940 + AT_rich Low_complexity Low_complexity 1 31 0 2133 135 3 3 chr3 29846782 29847094 -188190064 + AluSq SINE Alu 2 313 0 23 0 0 0 chr3 29847186 29847209 -188189949 + AT_rich Low_complexity Low_complexity 1 23 0 354 350 107 20 chr3 29847919 29848116 -188189042 - MIR SINE MIR -24 238 25 210 317 148 21 chr3 29848117 29848259 -188188899 - L3 LINE CR1 -19 1558 1399 715 296 79 12 chr3 29848323 29848563 -188188595 + MIR SINE MIR 2 257 -5 576 277 109 16 chr3 29848600 29848784 -188188374 - MIR SINE MIR -45 217 17 1857 123 3 68 chr3 29850104 29850434 -188186724 - AluSx SINE Alu 0 312 1 188 350 29 102 chr3 29850437 29850683 -188186475 + L2 LINE L2 2999 3226 -46 392 299 35 65 chr3 29851317 29851518 -188185640 - MIR SINE MIR 0 262 68 324 0 0 0 chr3 29852070 29852106 -188185052 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 157 0 36 chr3 29852120 29852203 -188184955 + (TA)n Simple_repeat Simple_repeat 2 81 0 430 281 92 30 chr3 29852485 29852649 -188184509 - MER5A DNA MER1_type -15 174 1 24 32 0 0 chr3 29852666 29852697 -188184461 + AT_rich Low_complexity Low_complexity 1 31 0 207 162 0 0 chr3 29853323 29853360 -188183798 + (CAT)n Simple_repeat Simple_repeat 3 39 0 11835 207 33 39 chr3 29853705 29857613 -188179545 + L1MA4A LINE L1 7 3938 -2995 2023 116 22 0 chr3 29857613 29857920 -188179238 + AluSx SINE Alu 1 313 0 11835 207 33 39 chr3 29857920 29858278 -188178880 + L1MA4A LINE L1 3938 4297 -2636 1716 188 24 13 chr3 29858278 29858576 -188178582 + AluJb SINE Alu 1 301 -11 11835 207 33 39 chr3 29858576 29859332 -188177826 + L1MA4A LINE L1 4297 5056 -1877 339 25 0 0 chr3 29859332 29859372 -188177786 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2152 101 0 18 chr3 29859379 29859665 -188177493 - AluSc SINE Alu -28 281 1 11835 207 33 39 chr3 29859665 29860676 -188176482 + L1MA4A LINE L1 5062 6023 -910 2144 134 0 0 chr3 29860676 29860974 -188176184 + AluSx SINE Alu 1 298 -14 11835 207 33 39 chr3 29860974 29861141 -188176017 + L1MA4A LINE L1 6023 6190 -743 189 0 0 0 chr3 29862150 29862171 -188174987 + (A)n Simple_repeat Simple_repeat 1 21 0 4090 167 22 10 chr3 29862171 29862981 -188174177 + L1MA4A LINE L1 6178 6997 -8 287 270 71 32 chr3 29863623 29863749 -188173409 + LTR16A1 LTR ERVL 327 457 0 1791 185 31 62 chr3 29863987 29864469 -188172689 + MLT1C LTR MaLR 1 467 0 189 0 0 0 chr3 29866093 29866114 -188171044 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr3 29868226 29868248 -188168910 + AT_rich Low_complexity Low_complexity 1 22 0 327 25 0 0 chr3 29869653 29869693 -188167465 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 2915 9 0 0 chr3 29871479 29871796 -188165362 - AluYb8 SINE Alu -1 317 1 227 307 52 52 chr3 29872719 29872872 -188164286 - MIR SINE MIR -101 161 9 21 0 0 0 chr3 29873051 29873072 -188164086 + AT_rich Low_complexity Low_complexity 1 21 0 652 119 17 8 chr3 29874593 29874711 -188162447 + CT-rich Low_complexity Low_complexity 3 121 0 24 53 0 0 chr3 29875253 29875291 -188161867 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 29875523 29875558 -188161600 + AT_rich Low_complexity Low_complexity 1 35 0 180 125 0 0 chr3 29876817 29876849 -188160309 + (CTG)n Simple_repeat Simple_repeat 2 33 0 615 111 30 0 chr3 29877825 29877924 -188159234 - L1PA13 LINE L1 -4 6159 6058 4265 144 9 0 chr3 29877932 29878624 -188158534 + L1P LINE L1 3613 4310 -1836 382 73 15 15 chr3 29879717 29879785 -188157373 + (TA)n Simple_repeat Simple_repeat 2 69 0 2162 116 0 3 chr3 29879785 29880079 -188157079 - AluSg1 SINE Alu -16 293 1 189 195 0 0 chr3 29880821 29880862 -188156296 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 219 186 0 0 chr3 29881158 29881201 -188155957 + GA-rich Low_complexity Low_complexity 4 46 0 192 179 0 0 chr3 29883328 29883367 -188153791 + (CA)n Simple_repeat Simple_repeat 2 40 0 554 260 117 0 chr3 29883700 29883854 -188153304 - MIR SINE MIR -16 246 75 22 0 0 0 chr3 29884658 29884680 -188152478 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 29884712 29884733 -188152425 + AT_rich Low_complexity Low_complexity 1 21 0 663 277 27 27 chr3 29884821 29885113 -188152045 - L1ME4a LINE L1 -268 5853 5562 658 246 86 37 chr3 29886884 29887071 -188150087 + MER3 DNA MER1_type 14 209 0 210 348 72 0 chr3 29887375 29887444 -188149714 + L2 LINE L2 3149 3222 -50 205 284 263 0 chr3 29887536 29887631 -188149527 + MIR SINE MIR 17 136 -126 302 333 0 10 chr3 29888535 29888637 -188148521 - MIR SINE MIR -83 125 25 1121 261 51 20 chr3 29889053 29889667 -188147491 + MER97a DNA MER1_type? 1 674 -220 595 269 53 0 chr3 29889652 29889823 -188147335 + LTR16C LTR ERVL 312 491 0 * 198 282 90 13 chr3 29890533 29890611 -188146547 + MER5B DNA MER1_type 88 171 -7 1755 150 10 29 chr3 29890722 29891028 -188146130 - AluJo SINE Alu -8 304 5 222 37 0 0 chr3 29891608 29891635 -188145523 + (TG)n Simple_repeat Simple_repeat 2 28 0 267 277 169 38 chr3 29891774 29891958 -188145200 + MIR SINE MIR 34 241 -21 21 82 0 0 chr3 29894582 29894631 -188142527 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr3 29894763 29894786 -188142372 + (A)n Simple_repeat Simple_repeat 1 23 0 23 54 0 0 chr3 29895432 29895469 -188141689 + AT_rich Low_complexity Low_complexity 1 37 0 2280 184 49 2 chr3 29895750 29896216 -188140942 + L1MC3 LINE L1 7290 7777 -8 229 303 0 15 chr3 29896465 29896531 -188140627 - L2 LINE L2 -5 3308 3244 259 282 99 0 chr3 29896625 29896696 -188140462 + L2 LINE L2 3220 3297 -16 373 243 171 39 chr3 29896739 29896920 -188140238 - MIR SINE MIR -38 224 20 32 26 0 0 chr3 29896926 29896965 -188140193 + AT_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr3 29897954 29897982 -188139176 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 330 222 0 0 chr3 29898293 29898383 -188138775 + (TG)n Simple_repeat Simple_repeat 2 91 0 262 191 111 0 chr3 29898823 29898886 -188138272 + MER115 DNA AcHobo 616 685 -8 2290 97 0 7 chr3 29899547 29899846 -188137312 - AluSg SINE Alu -13 297 1 2242 111 0 7 chr3 29899846 29900153 -188137005 - AluSx SINE Alu -7 305 1 1030 215 0 0 chr3 29901477 29901663 -188135495 - MER5A DNA MER1_type -1 188 3 444 239 18 26 chr3 29901775 29901888 -188135270 + MER81 DNA DNA 3 114 0 2288 108 3 0 chr3 29901954 29902259 -188134899 - AluSx SINE Alu -6 306 1 209 200 20 0 chr3 29905826 29905876 -188131282 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 286 325 50 0 chr3 29907214 29907334 -188129824 - MIR SINE MIR -74 188 63 188 333 83 0 chr3 29907713 29907797 -188129361 + L2 LINE L2 2694 2784 -530 3905 212 47 30 chr3 29907797 29909836 -188127322 + L1MB7 LINE L1 4049 6167 -17 1115 271 30 107 chr3 29909842 29910022 -188127136 + L2 LINE L2 2773 2965 -348 11754 33 5 0 chr3 29910022 29912212 -188124946 + L1PA5 LINE L1 3956 6151 -3 1115 271 30 107 chr3 29912212 29912615 -188124543 + L2 LINE L2 2965 3313 0 330 26 0 0 chr3 29912802 29912841 -188124317 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2048 128 0 0 chr3 29912846 29913120 -188124038 - AluSg SINE Alu -36 274 1 1670 167 3 33 chr3 29913657 29913957 -188123201 + AluJb SINE Alu 1 291 -21 1846 174 48 34 chr3 29914010 29914448 -188122710 + L1MB7 LINE L1 5741 6184 0 25 0 0 0 chr3 29914973 29914998 -188122160 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 29915982 29916004 -188121154 + AT_rich Low_complexity Low_complexity 1 22 0 196 338 39 42 chr3 29916382 29916573 -188120585 - MIR SINE MIR -31 231 43 1978 129 7 0 chr3 29916736 29917043 -188120115 + AluSg SINE Alu 1 309 0 2128 115 0 3 chr3 29918166 29918479 -188118679 + AluSq SINE Alu 1 312 0 30 27 0 0 chr3 29919840 29919877 -188117281 + AT_rich Low_complexity Low_complexity 1 37 0 251 209 0 0 chr3 29921479 29921522 -188115636 + 5S rRNA rRNA 1 43 -78 335 379 117 28 chr3 29921532 29921822 -188115336 + L2 LINE L2 2592 2907 -407 332 333 66 16 chr3 29922285 29922468 -188114690 - MIR3 SINE MIR -15 193 2 2313 221 46 32 chr3 29923338 29923585 -188113573 + L1ME2 LINE L1 5431 5673 -491 2274 106 3 0 chr3 29923585 29923887 -188113271 + AluSg SINE Alu 1 303 -7 2313 221 46 32 chr3 29923887 29924106 -188113052 + L1ME2 LINE L1 5673 5887 -277 2131 98 3 20 chr3 29924106 29924402 -188112756 + AluSc SINE Alu 1 291 -18 2313 221 46 32 chr3 29924402 29924648 -188112510 + L1ME2 LINE L1 5887 6154 -10 194 298 35 0 chr3 29925634 29925691 -188111467 + L2 LINE L2 3213 3271 -1 293 322 158 23 chr3 29926488 29926659 -188110499 - MIR3 SINE MIR -5 203 10 405 102 0 0 chr3 29926699 29926758 -188110400 + (TC)n Simple_repeat Simple_repeat 2 60 0 369 0 0 0 chr3 29926758 29926799 -188110359 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 29927508 29927529 -188109629 + AT_rich Low_complexity Low_complexity 1 21 0 776 238 99 99 chr3 29928056 29928418 -188108740 + MER57B LTR ERV1 67 428 -6 405 346 156 4 chr3 29928428 29928685 -188108473 + L2 LINE L2 2530 2825 -489 211 178 14 41 chr3 29929430 29929503 -188107655 + (TA)n Simple_repeat Simple_repeat 1 71 0 211 297 51 76 chr3 29929773 29929891 -188107267 + L2 LINE L2 3152 3266 -6 509 138 0 0 chr3 29930642 29930722 -188106436 - MADE1 DNA Mariner 0 80 1 1113 205 20 43 chr3 29932599 29932698 -188104460 + AluJb SINE Alu 40 140 -172 265 24 48 0 chr3 29932698 29932740 -188104418 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1113 205 20 43 chr3 29932740 29932894 -188104264 + AluJb SINE Alu 140 287 -25 209 393 17 0 chr3 29933570 29933687 -188103471 + L2 LINE L2 3195 3313 0 325 256 241 0 chr3 29933920 29934053 -188103105 + MLT1I LTR MaLR 218 382 -27 2280 116 0 0 chr3 29935563 29935865 -188101293 - AluSx SINE Alu -10 302 1 200 365 0 52 chr3 29936880 29936995 -188100163 - L3 LINE CR1 -75 1502 1394 672 221 13 6 chr3 29936997 29937155 -188100003 - FRAM SINE Alu -17 159 1 213 316 51 13 chr3 29937159 29937238 -188099920 - L3 LINE CR1 -177 1400 1319 * 246 320 10 41 chr3 29937222 29937319 -188099839 + L2 LINE L2 3220 3313 0 516 350 89 20 chr3 29937319 29937710 -188099448 - L3 LINE CR1 -253 1324 907 1035 241 9 5 chr3 29937710 29937922 -188099236 + MER58A DNA MER1_type 1 213 -11 2813 240 125 31 chr3 29938291 29939418 -188097740 - L1MD2 LINE L1 -16 6343 5098 1687 225 199 42 chr3 29939427 29940041 -188097117 - LTR41 LTR ERVL -6 767 58 807 279 13 96 chr3 29940209 29940607 -188096551 - L1MDa LINE L1 -6162 378 14 191 256 23 0 chr3 29941176 29941219 -188095939 - L2 LINE L2 -18 3254 3211 314 365 7 0 chr3 29942117 29942254 -188094904 - L3 LINE CR1 -3 1574 1437 225 313 87 35 chr3 29942353 29942468 -188094690 - L2 LINE L2 -41 3272 3152 314 307 89 34 chr3 29942503 29942682 -188094476 - L3 LINE CR1 -193 1384 1196 447 306 69 46 chr3 29943168 29943384 -188093774 + MIR SINE MIR 31 251 -11 273 75 0 0 chr3 29943793 29943833 -188093325 + (CA)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr3 29945611 29945638 -188091520 + AT_rich Low_complexity Low_complexity 1 27 0 889 180 0 0 chr3 29945654 29945793 -188091365 - AluJo SINE Alu -38 274 136 596 255 176 30 chr3 29945868 29946135 -188091023 + MLT1G1 LTR MaLR 42 347 -248 651 247 68 0 chr3 29947067 29947213 -188089945 + MER58A DNA MER1_type 2 157 0 207 69 0 0 chr3 29947397 29947426 -188089732 + (CA)n Simple_repeat Simple_repeat 2 30 0 183 62 21 62 chr3 29947852 29947900 -188089258 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 1747 156 33 4 chr3 29947963 29948279 -188088879 + AluSx SINE Alu 1 324 0 750 168 15 0 chr3 29949094 29949225 -188087933 - AluJo SINE Alu -169 133 1 227 333 130 0 chr3 29950013 29950136 -188087022 + MIR SINE MIR 35 173 -89 3781 223 8 1 chr3 29950826 29951705 -188085453 + L1PA15 LINE L1 2798 3682 -2464 256 125 31 0 chr3 29951710 29951774 -188085384 + (TA)n Simple_repeat Simple_repeat 2 67 0 447 118 0 50 chr3 29951808 29951927 -188085231 + (TA)n Simple_repeat Simple_repeat 1 113 0 342 214 0 61 chr3 29951928 29952026 -188085132 + L1MC4 LINE L1 6614 6705 -1337 203 86 0 29 chr3 29952027 29952062 -188085096 + (TA)n Simple_repeat Simple_repeat 2 35 0 7479 199 20 18 chr3 29952071 29953025 -188084133 + L1PA15 LINE L1 3697 4647 -1518 2017 146 0 13 chr3 29953025 29953334 -188083824 + AluSx SINE Alu 1 305 -7 7479 199 20 18 chr3 29953334 29954158 -188083000 + L1PA15 LINE L1 4647 5481 -684 2125 76 0 18 chr3 29954158 29954433 -188082725 + AluSc SINE Alu 35 304 -5 7479 199 20 18 chr3 29954433 29955120 -188082038 + L1PA15 LINE L1 5481 6165 0 3882 131 44 3 chr3 29956220 29956839 -188080319 + LTR9B LTR ERV1 1 644 0 22 0 0 0 chr3 29957326 29957348 -188079810 + AT_rich Low_complexity Low_complexity 1 22 0 429 204 11 10 chr3 29957472 29957569 -188079589 + MER34 LTR ERV1 1 92 -450 465 220 96 39 chr3 29957572 29957859 -188079299 + LTR48 LTR ERV1 166 491 -153 211 269 0 0 chr3 29959752 29959804 -188077354 + MIR3 SINE MIR 146 197 -11 208 245 102 48 chr3 29960657 29960804 -188076354 - L2 LINE L2 -962 2352 2198 3840 183 20 19 chr3 29960804 29961538 -188075620 + MER49 LTR ERV1 177 911 -12 918 242 175 14 chr3 29961598 29961895 -188075263 + MLT1I LTR MaLR 63 407 -2 22 0 0 0 chr3 29962202 29962224 -188074934 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 29962527 29962555 -188074603 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 29962807 29962829 -188074329 + AT_rich Low_complexity Low_complexity 1 22 0 436 294 0 16 chr3 29963072 29963198 -188073960 - FLAM_A SINE Alu -9 124 1 184 0 97 0 chr3 29963465 29963496 -188073662 + T-rich Low_complexity Low_complexity 2 35 0 3500 102 30 26 chr3 29963787 29964353 -188072805 + LTR24B LTR ERV1 1 568 -8 721 74 0 0 chr3 29964432 29964527 -188072631 - AluY SINE Alu -4 307 213 2477 77 0 0 chr3 29967331 29967630 -188069528 + AluSc SINE Alu 3 301 -8 191 32 65 0 chr3 29968673 29968704 -188068454 + A-rich Low_complexity Low_complexity 2 34 0 27 0 0 0 chr3 29968932 29968959 -188068199 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 29968987 29969015 -188068143 + AT_rich Low_complexity Low_complexity 1 28 0 1802 186 12 66 chr3 29969884 29970308 -188066850 + MER57A LTR ERV1 3 403 0 27 49 0 0 chr3 29970931 29970972 -188066186 + AT_rich Low_complexity Low_complexity 1 41 0 274 132 0 0 chr3 29970983 29971021 -188066137 + MER34C LTR ERV1 1 38 -547 2416 163 72 118 chr3 29971024 29971772 -188065386 + LTR8A LTR ERV1 1 714 -13 * 2624 156 72 40 chr3 29971767 29972311 -188064847 + MER34C LTR ERV1 22 582 -3 27 49 0 0 chr3 29972422 29972463 -188064695 + AT_rich Low_complexity Low_complexity 1 41 0 748 249 21 47 chr3 29973337 29973530 -188063628 + MER5A DNA MER1_type 1 188 -1 180 333 0 0 chr3 29975587 29975632 -188061526 + L2 LINE L2 2923 2967 -305 301 278 0 82 chr3 29976805 29976902 -188060256 - L2 LINE L2 -1 3271 3183 1361 185 63 35 chr3 29976933 29977220 -188059938 + AluJo SINE Alu 1 295 -17 2087 130 0 7 chr3 29977807 29978099 -188059059 - AluSg SINE Alu -19 291 2 217 348 90 28 chr3 29978614 29978792 -188058366 - MIR SINE MIR -58 204 16 543 330 82 54 chr3 29979115 29979760 -188057398 - L2 LINE L2 -456 2858 2196 21 57 0 0 chr3 29980545 29980580 -188056578 + AT_rich Low_complexity Low_complexity 1 35 0 2403 73 13 0 chr3 29980868 29981169 -188055989 + AluSp SINE Alu 1 305 -8 182 210 123 49 chr3 29981235 29981316 -188055842 + MER5C DNA MER1_type 36 122 -202 456 304 44 20 chr3 29981973 29982177 -188054981 - L2 LINE L2 -1227 2087 1879 237 132 0 0 chr3 29982626 29982664 -188054494 + L2 LINE L2 3270 3307 -6 583 206 16 8 chr3 29983445 29983571 -188053587 - MIR SINE MIR -110 152 26 359 306 60 99 chr3 29983787 29984222 -188052936 + MLT1J1 LTR MaLR 29 446 0 368 286 31 20 chr3 29985240 29985338 -188051820 + MIR SINE MIR 43 141 -121 2370 169 24 9 chr3 29985352 29985772 -188051386 + MSTB LTR MaLR 1 426 0 4442 185 32 3 chr3 29986645 29987527 -188049631 + L1MC1 LINE L1 5417 6323 -10 204 40 0 0 chr3 29987529 29987554 -188049604 + (GA)n Simple_repeat Simple_repeat 1 25 0 520 220 76 0 chr3 29987665 29987797 -188049361 + MLT1L LTR MaLR 423 564 -51 205 296 93 0 chr3 29988237 29988291 -188048867 - L2 LINE L2 -5 3308 3250 198 0 0 0 chr3 29988809 29988831 -188048327 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 333 305 102 50 chr3 29989472 29989673 -188047485 - MIR SINE MIR -17 245 35 1111 282 86 15 chr3 29992028 29992425 -188044733 - L2 LINE L2 0 3313 2889 878 197 113 84 chr3 29992425 29992587 -188044571 - MER96B DNA MER1_type? 0 417 261 2215 94 0 38 chr3 29992587 29992907 -188044251 - AluSx SINE Alu -4 308 1 878 197 113 84 chr3 29992907 29993125 -188044033 - MER96B DNA MER1_type? -156 261 26 1789 264 104 16 chr3 29993140 29993757 -188043401 - L2 LINE L2 -418 2896 2226 35 41 0 0 chr3 29995136 29995185 -188041973 + AT_rich Low_complexity Low_complexity 1 49 0 556 232 8 8 chr3 29996731 29996856 -188040302 + L1MC1 LINE L1 6204 6328 -5 1295 212 10 26 chr3 29997793 29998099 -188039059 - AluJo SINE Alu 0 312 12 1218 178 98 46 chr3 29998099 29998425 -188038733 + MER61A LTR ERV1 1 343 0 2067 148 12 96 chr3 29998425 29998493 -188038665 + MER61A-int LTR ERV1 1 73 -5144 1943 97 14 17 chr3 29998493 29998782 -188038376 + AluSx SINE Alu 1 288 -24 2067 148 12 96 chr3 29998782 29999410 -188037748 + MER61A-int LTR ERV1 73 777 -4440 335 70 0 0 chr3 29999403 29999446 -188037712 + MER61A-int LTR ERV1 1320 1362 -3855 * 20577 105 40 15 chr3 29999462 30003068 -188034090 + MER61A-int LTR ERV1 1655 5201 -16 188 35 35 0 chr3 30003068 30003097 -188034061 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2025 96 22 0 chr3 30003103 30003373 -188033785 - AluSx SINE Alu -36 276 1 1430 148 126 19 chr3 30003398 30003708 -188033450 + MER61A LTR ERV1 1 343 0 200 336 47 28 chr3 30004285 30004392 -188032766 + MIR SINE MIR 35 143 -65 267 81 0 0 chr3 30005474 30005511 -188031647 - tRNA-Glu-GAG tRNA tRNA -38 37 1 2089 123 0 0 chr3 30005958 30006243 -188030915 - AluSg SINE Alu -25 285 1 1536 182 20 135 chr3 30008211 30008705 -188028453 + MLT1D LTR MaLR 1 437 -68 11531 158 17 4 chr3 30008705 30010678 -188026480 - Tigger1 DNA MER2_type -1 2417 420 29969 109 27 65 chr3 30010679 30017063 -188020095 - L1PA7 LINE L1 0 6154 12 1734 161 34 0 chr3 30017072 30017364 -188019794 - Tigger1 DNA MER2_type -1988 430 129 429 136 0 0 chr3 30017380 30017446 -188019712 + MLT1D LTR MaLR 440 505 0 30 27 0 0 chr3 30017731 30017768 -188019390 + AT_rich Low_complexity Low_complexity 1 37 0 408 337 76 12 chr3 30017833 30018005 -188019153 + L3 LINE CR1 1382 1564 -13 23 33 0 0 chr3 30018188 30018218 -188018940 + AT_rich Low_complexity Low_complexity 1 30 0 2053 187 0 6 chr3 30018488 30018851 -188018307 + MLT1A1 LTR MaLR 1 361 -4 32 0 0 0 chr3 30019780 30019812 -188017346 + AT_rich Low_complexity Low_complexity 1 32 0 758 188 0 0 chr3 30020877 30021005 -188016153 - FRAM SINE Alu -48 128 1 215 253 103 35 chr3 30021053 30021140 -188016018 + MIR SINE MIR 167 259 -3 184 294 0 59 chr3 30021573 30021641 -188015517 - MIR SINE MIR 0 262 199 1899 122 31 17 chr3 30021805 30022093 -188015065 + AluSx SINE Alu 1 292 -20 1362 235 47 41 chr3 30022151 30022598 -188014560 - L1ME1 LINE L1 -4 6162 5713 23 54 0 0 chr3 30023844 30023881 -188013277 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 30024249 30024270 -188012888 + AT_rich Low_complexity Low_complexity 1 21 0 5823 27 0 1 chr3 30024453 30025157 -188012001 - L1P LINE L1 -3425 2721 2019 3129 35 3 0 chr3 30025157 30025528 -188011630 + L1PA3 LINE L1 5779 6150 -5 189 240 107 40 chr3 30026164 30026239 -188010919 - MIR SINE MIR -109 99 20 1269 264 124 7 chr3 30026468 30027014 -188010144 - L1ME3 LINE L1 0 6162 5553 1318 275 78 70 chr3 30027018 30027701 -188009457 - MER21B LTR ERV1 -149 714 27 412 202 12 0 chr3 30027896 30027980 -188009178 + MER39 LTR ERV1 1 85 -622 * 1139 165 87 13 chr3 30027976 30028206 -188008952 + MER39 LTR ERV1 461 707 0 633 336 11 19 chr3 30028305 30028567 -188008591 - MIR SINE MIR 0 262 3 2321 94 0 0 chr3 30029240 30029538 -188007620 + AluSq SINE Alu 1 298 -15 1270 246 67 41 chr3 30029565 30030280 -188006878 + L1MC5 LINE L1 7194 7927 -34 22 0 0 0 chr3 30030315 30030337 -188006821 + AT_rich Low_complexity Low_complexity 1 22 0 456 325 92 55 chr3 30030975 30031323 -188005835 + L2 LINE L2 2904 3264 -8 6056 137 14 23 chr3 30032332 30033266 -188003892 - L1MA5 LINE L1 -2 6298 5379 1789 169 3 23 chr3 30033266 30033574 -188003584 - AluJb SINE Alu -6 306 5 6056 137 14 23 chr3 30033574 30034362 -188002796 - L1MA5 LINE L1 -921 5379 4585 24 0 0 0 chr3 30035055 30035079 -188002079 + AT_rich Low_complexity Low_complexity 1 24 0 1379 242 120 19 chr3 30035081 30035499 -188001659 - MLT1C LTR MaLR -7 460 1 303 243 54 0 chr3 30036213 30036287 -188000871 + L1MC4 LINE L1 6626 6703 -1339 183 167 42 42 chr3 30036958 30037006 -188000152 + L2 LINE L2 3255 3302 -11 288 193 68 45 chr3 30037256 30037344 -187999814 - MER5B DNA MER1_type -6 172 83 313 290 48 11 chr3 30037492 30037657 -187999501 - MIR SINE MIR -62 146 5 249 108 0 0 chr3 30038216 30038253 -187998905 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2043 99 37 0 chr3 30038255 30038528 -187998630 - AluSg SINE Alu -27 283 1 32 57 0 0 chr3 30039196 30039249 -187997909 + AT_rich Low_complexity Low_complexity 1 53 0 2064 100 3 17 chr3 30039402 30039741 -187997417 - AluSx SINE Alu 0 335 1 22 0 0 0 chr3 30039868 30039890 -187997268 + AT_rich Low_complexity Low_complexity 1 22 0 298 29 0 0 chr3 30039931 30039966 -187997192 - U2 snRNA snRNA -153 35 1 1399 215 9 57 chr3 30041349 30041499 -187995659 + AluJo SINE Alu 1 130 -182 186 43 0 0 chr3 30041499 30041522 -187995636 + (CA)n Simple_repeat Simple_repeat 2 24 0 1399 215 9 57 chr3 30041522 30041687 -187995471 + AluJo SINE Alu 130 301 -11 329 266 106 18 chr3 30043491 30043604 -187993554 - L2 LINE L2 -40 3232 3110 432 318 85 30 chr3 30043951 30044351 -187992807 + L1ME3A LINE L1 4415 4836 -1310 1010 303 50 35 chr3 30044375 30044771 -187992387 - L2 LINE L2 0 3313 2912 273 311 84 4 chr3 30044790 30045015 -187992143 + L1ME3A LINE L1 4879 5121 -1025 701 270 105 58 chr3 30045108 30045697 -187991461 + L1ME3A LINE L1 5268 5884 -286 24 53 0 0 chr3 30046269 30046307 -187990851 + AT_rich Low_complexity Low_complexity 1 38 0 1302 214 31 10 chr3 30046376 30046665 -187990493 + AluJo SINE Alu 1 295 -17 342 282 129 24 chr3 30047440 30047610 -187989548 + MIR SINE MIR 43 230 -32 189 94 0 0 chr3 30048006 30048038 -187989120 + (A)n Simple_repeat Simple_repeat 1 32 0 501 266 25 60 chr3 30049782 30049981 -187987177 - LTR16A1 LTR ERVL 0 457 266 368 143 42 17 chr3 30050884 30051003 -187986155 + (TA)n Simple_repeat Simple_repeat 1 122 0 1074 198 156 8 chr3 30051978 30052241 -187984917 - AluJb SINE Alu 0 302 1 25 75 0 0 chr3 30052476 30052529 -187984629 + AT_rich Low_complexity Low_complexity 1 53 0 24 67 0 0 chr3 30054841 30054886 -187982272 + AT_rich Low_complexity Low_complexity 1 45 0 223 240 0 0 chr3 30055034 30055084 -187982074 - MIR SINE MIR -108 154 105 3970 84 20 7 chr3 30055273 30055820 -187981338 + MER41A LTR ERV1 1 554 0 262 286 113 8 chr3 30056192 30056440 -187980718 + HAL1 LINE L1 981 1254 -1253 2205 128 31 0 chr3 30057412 30057765 -187979393 - THE1B LTR MaLR 0 364 1 230 255 39 98 chr3 30057889 30057976 -187979182 - MIR SINE MIR -94 114 32 2878 12 0 3 chr3 30057976 30058295 -187978863 - AluYb8 SINE Alu 0 318 1 230 255 39 98 chr3 30058295 30058309 -187978849 - MIR SINE MIR -176 32 19 526 303 108 48 chr3 30058674 30059107 -187978051 + L1MC4a LINE L1 5472 5930 -1878 362 336 29 0 chr3 30059306 30059443 -187977715 + MLT1J2 LTR MaLR 51 191 -259 237 263 26 13 chr3 30059558 30059634 -187977524 + MLT1I LTR MaLR 319 395 -14 244 313 121 38 chr3 30059963 30060302 -187976856 - L2 LINE L2 -1216 2098 1732 410 235 12 0 chr3 30061105 30061186 -187975972 + MIR SINE MIR 105 186 -76 379 316 70 9 chr3 30061670 30061885 -187975273 + LTR33 LTR ERVL 294 521 0 322 280 72 96 chr3 30061970 30062095 -187975063 - MIR SINE MIR -65 143 21 212 179 0 0 chr3 30062625 30062664 -187974494 + (TA)n Simple_repeat Simple_repeat 1 39 0 328 291 51 32 chr3 30062735 30062893 -187974265 - MIR SINE MIR -56 206 46 2056 122 26 3 chr3 30063468 30063771 -187973387 - AluSg SINE Alu 0 310 1 478 338 88 4 chr3 30063892 30064120 -187973038 + MIR SINE MIR 11 257 -5 464 323 69 67 chr3 30065044 30065505 -187971653 + MLT1K LTR MaLR 125 586 -2 458 239 72 43 chr3 30065805 30065881 -187971277 - MIR SINE MIR -18 244 161 1499 236 129 53 chr3 30065881 30065951 -187971207 - MLT1E LTR MaLR 0 593 530 2294 66 0 30 chr3 30065951 30066253 -187970905 + AluY SINE Alu 1 293 -18 1499 236 129 53 chr3 30066253 30066733 -187970425 - MLT1E LTR MaLR -63 530 1 458 239 72 43 chr3 30066733 30066794 -187970364 - MIR SINE MIR -101 161 103 322 302 11 110 chr3 30067447 30067556 -187969602 - MIR SINE MIR -11 251 166 1968 95 0 69 chr3 30067556 30067860 -187969298 - AluSg SINE Alu -27 283 1 322 302 11 110 chr3 30067860 30067932 -187969226 - MIR SINE MIR -96 166 88 219 69 0 0 chr3 30068442 30068471 -187968687 + (T)n Simple_repeat Simple_repeat 1 29 0 1348 294 20 31 chr3 30068538 30068991 -187968167 - MER69 DNA AcHobo -778 448 1 1646 157 74 84 chr3 30069541 30069935 -187967223 - MLT1B LTR MaLR 0 390 1 2195 110 3 0 chr3 30070049 30070349 -187966809 - AluSc SINE Alu -8 301 1 267 270 122 0 chr3 30070386 30070460 -187966698 - MLT1J LTR MaLR -349 162 80 2098 165 61 20 chr3 30070511 30070918 -187966240 + MSTB LTR MaLR 1 424 -2 216 0 0 0 chr3 30071256 30071280 -187965878 + (TG)n Simple_repeat Simple_repeat 2 25 0 457 290 62 7 chr3 30072766 30072911 -187964247 + MIR3 SINE MIR 9 161 -47 575 311 106 8 chr3 30072917 30073152 -187964006 - MIR SINE MIR 0 262 5 192 312 18 37 chr3 30073252 30073361 -187963797 + MIR3 SINE MIR 10 116 -92 1179 220 38 107 chr3 30073495 30073991 -187963167 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr3 30074075 30074096 -187963062 + AT_rich Low_complexity Low_complexity 1 21 0 2224 229 16 20 chr3 30074310 30074807 -187962351 + LTR31 LTR ERV1 109 603 -16 303 28 0 0 chr3 30074866 30074902 -187962256 + (TG)n Simple_repeat Simple_repeat 2 37 0 297 0 0 0 chr3 30077017 30077050 -187960108 + (TG)n Simple_repeat Simple_repeat 1 33 0 285 29 0 0 chr3 30077328 30077362 -187959796 + (TG)n Simple_repeat Simple_repeat 1 34 0 399 295 152 28 chr3 30078496 30078713 -187958445 + MIR SINE MIR 2 245 -17 1536 168 3 63 chr3 30078833 30079149 -187958009 + AluJo SINE Alu 11 307 -5 347 310 50 0 chr3 30081230 30081330 -187955828 - MER3 DNA MER1_type -104 105 1 464 235 157 69 chr3 30081392 30081609 -187955549 - MIR SINE MIR -6 256 21 209 198 163 35 chr3 30081747 30081833 -187955325 - MIR SINE MIR -6 256 160 369 0 0 0 chr3 30082710 30082751 -187954407 + (TG)n Simple_repeat Simple_repeat 1 41 0 322 239 11 65 chr3 30083810 30083902 -187953256 + MIR SINE MIR 20 106 -102 323 355 36 12 chr3 30084088 30084254 -187952904 - MER5B DNA MER1_type -2 176 7 340 345 36 0 chr3 30084099 30084238 -187952920 + MER5A DNA MER1_type 24 167 -22 217 196 20 0 chr3 30084276 30084327 -187952831 - MIR SINE MIR 0 262 211 266 314 17 81 chr3 30085465 30085637 -187951521 - MIR SINE MIR -55 207 47 2179 119 3 10 chr3 30085656 30085968 -187951190 - AluSp SINE Alu -3 310 1 299 337 50 0 chr3 30086024 30086125 -187951033 + MIR3 SINE MIR 60 165 -43 411 325 117 10 chr3 30086237 30086434 -187950724 - MIR SINE MIR -4 258 41 370 301 88 22 chr3 30087487 30087623 -187949535 - L2 LINE L2 -1 3312 3168 207 343 57 14 chr3 30087639 30087779 -187949379 - L2 LINE L2 -88 3225 3080 1759 198 0 3 chr3 30089377 30089690 -187947468 + AluJo SINE Alu 1 312 0 587 167 29 23 chr3 30089694 30089868 -187947290 + GA-rich Low_complexity Low_complexity 4 178 0 21 36 0 0 chr3 30090300 30090328 -187946830 + AT_rich Low_complexity Low_complexity 1 28 0 220 407 23 0 chr3 30090599 30090685 -187946473 - L2 LINE L2 -22 3250 3163 736 307 13 9 chr3 30090761 30090992 -187946166 - MIR SINE MIR -2 260 29 267 0 22 44 chr3 30090997 30091042 -187946116 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4803 91 12 4 chr3 30091042 30091733 -187945425 - L1PB1 LINE L1 -10 6141 5446 289 158 0 0 chr3 30091735 30091789 -187945369 - MLT2A2 LTR ERVL -8 512 403 231 175 0 0 chr3 30091804 30091861 -187945297 + (TA)n Simple_repeat Simple_repeat 1 57 0 3149 69 20 7 chr3 30091861 30092269 -187944889 - MLT2A2 LTR ERVL -40 413 1 3358 172 6 9 chr3 30092269 30093055 -187944103 - L1P5 LINE L1 -702 5449 4670 1636 237 69 18 chr3 30093677 30094170 -187942988 + LTR40a LTR ERVL 2 519 0 727 254 53 37 chr3 30094621 30094865 -187942293 + L2 LINE L2 3062 3309 -4 451 268 82 9 chr3 30094897 30095117 -187942041 - L1ME4a LINE L1 -182 5939 5704 26 50 0 0 chr3 30095263 30095303 -187941855 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 30095536 30095556 -187941602 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1607 208 50 14 chr3 30095876 30096236 -187940922 + MLT1A2 LTR MaLR 1 373 -1 243 246 18 0 chr3 30096796 30096853 -187940305 + GA-rich Low_complexity Low_complexity 2 59 0 26 0 0 0 chr3 30096888 30096914 -187940244 + AT_rich Low_complexity Low_complexity 1 26 0 885 128 0 61 chr3 30097103 30097216 -187939942 - FLAM_C SINE Alu -173 139 36 1796 201 26 124 chr3 30097216 30097894 -187939264 + LTR9 LTR ERV1 1 612 0 885 128 0 61 chr3 30097894 30097928 -187939230 - FLAM_C SINE Alu -276 36 1 2385 176 77 15 chr3 30098061 30098579 -187938579 + L1MB3 LINE L1 5634 6183 0 442 212 0 30 chr3 30099254 30099353 -187937805 - MER3 DNA MER1_type -113 96 1 3273 181 22 0 chr3 30099519 30100110 -187937048 - MER6A DNA MER2_type -1 604 1 190 308 33 22 chr3 30101851 30101942 -187935216 - MIR SINE MIR -140 122 31 466 239 6 6 chr3 30102786 30102953 -187934205 + CT-rich Low_complexity Low_complexity 1 167 0 21 0 0 0 chr3 30103406 30103427 -187933731 + AT_rich Low_complexity Low_complexity 1 21 0 1929 137 38 32 chr3 30103547 30103919 -187933239 + THE1C LTR MaLR 1 374 -1 628 244 6 38 chr3 30104380 30104540 -187932618 - MIR SINE MIR -105 157 3 235 362 38 0 chr3 30104533 30104638 -187932520 + MER5A DNA MER1_type 4 112 -77 * 36 62 0 0 chr3 30105987 30106051 -187931107 + AT_rich Low_complexity Low_complexity 1 64 0 2555 51 0 29 chr3 30106468 30106784 -187930374 + AluY SINE Alu 1 307 -4 213 121 0 0 chr3 30106982 30107015 -187930143 + (T)n Simple_repeat Simple_repeat 1 33 0 2407 47 0 0 chr3 30107945 30108241 -187928917 - L1PA4 LINE L1 -3 6152 5857 189 195 0 0 chr3 30108744 30108785 -187928373 + (TA)n Simple_repeat Simple_repeat 1 41 0 254 237 17 0 chr3 30108951 30109010 -187928148 + (TA)n Simple_repeat Simple_repeat 2 61 0 951 197 208 4 chr3 30110054 30110323 -187926835 - MER5C DNA MER1_type 0 324 1 248 224 61 61 chr3 30110527 30110580 -187926578 - MER5B DNA MER1_type 0 178 123 180 0 0 0 chr3 30110580 30110600 -187926558 + (CAA)n Simple_repeat Simple_repeat 2 21 0 248 224 61 61 chr3 30110600 30110644 -187926514 - MER5B DNA MER1_type -54 124 81 181 291 55 0 chr3 30110697 30110752 -187926406 - MIR SINE MIR -88 174 117 22 56 0 0 chr3 30110905 30110941 -187926217 + AT_rich Low_complexity Low_complexity 1 36 0 299 366 54 37 chr3 30111208 30111457 -187925701 + MIR3 SINE MIR 12 262 0 392 274 18 18 chr3 30111615 30111728 -187925430 + L3 LINE CR1 1440 1552 -25 1838 160 18 75 chr3 30111734 30112133 -187925025 - MLT1B LTR MaLR -14 376 1 341 313 92 31 chr3 30112162 30112325 -187924833 + MIR3 SINE MIR 30 202 -6 211 132 57 0 chr3 30114018 30114071 -187923087 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 191 241 17 35 chr3 30114079 30114137 -187923021 - L2 LINE L2 0 3272 3216 240 214 0 0 chr3 30114486 30114542 -187922616 + CT-rich Low_complexity Low_complexity 2 57 0 197 344 33 33 chr3 30114565 30114655 -187922503 + L2 LINE L2 3220 3309 -4 201 267 67 0 chr3 30114930 30114975 -187922183 + MIR SINE MIR 203 250 -12 185 282 0 0 chr3 30114943 30114982 -187922176 + L2 LINE L2 3264 3302 -11 * 461 248 110 0 chr3 30115138 30115247 -187921911 + L2 LINE L2 3189 3309 -4 190 186 47 0 chr3 30115336 30115379 -187921779 + MER5A DNA MER1_type 68 112 -77 251 200 0 14 chr3 30115564 30115634 -187921524 + CT-rich Low_complexity Low_complexity 2 70 0 180 224 0 86 chr3 30116878 30116936 -187920222 + L2 LINE L2 3219 3271 -1 23 68 0 0 chr3 30117396 30117440 -187919718 + AT_rich Low_complexity Low_complexity 1 44 0 547 336 81 5 chr3 30118355 30118578 -187918580 - MIR SINE MIR -21 241 2 270 292 23 0 chr3 30118617 30118713 -187918445 - MIR SINE MIR -60 148 79 258 56 0 0 chr3 30119358 30119394 -187917764 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 30119571 30119592 -187917566 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 30122195 30122231 -187914927 + AT_rich Low_complexity Low_complexity 1 36 0 2281 163 20 45 chr3 30124394 30124837 -187912321 + MSTB1 LTR MaLR 1 432 0 372 175 0 0 chr3 30125014 30125077 -187912081 + Alu SINE Alu 240 302 0 225 139 0 0 chr3 30125077 30125113 -187912045 + L1 LINE L1 3452 3487 -2659 21 0 0 0 chr3 30125159 30125180 -187911978 + AT_rich Low_complexity Low_complexity 1 21 0 4804 180 9 0 chr3 30125190 30126083 -187911075 + L1 LINE L1 3511 4411 -1735 1739 175 30 18 chr3 30126203 30126541 -187910617 + Tigger3(Golem) DNA MER2_type 2687 3028 -1 1511 186 0 4 chr3 30127198 30127451 -187909707 - AluJb SINE Alu -32 280 29 384 191 0 0 chr3 30128101 30128185 -187908973 + (TA)n Simple_repeat Simple_repeat 2 85 0 1981 157 0 3 chr3 30128240 30128545 -187908613 + AluJo SINE Alu 1 304 -8 1560 126 0 0 chr3 30128908 30129114 -187908044 + AluSx SINE Alu 5 210 -102 1190 278 85 17 chr3 30129224 30129868 -187907290 - L1M4 LINE L1 -1029 5117 4430 245 271 103 76 chr3 30130010 30130301 -187906857 + L1M3 LINE L1 3708 4006 -2140 9943 30 0 0 chr3 30130451 30131635 -187905523 - L1P LINE L1 -1362 4784 3601 766 261 37 0 chr3 30131773 30131991 -187905167 - L1ME3A LINE L1 -223 5947 5722 1675 120 35 0 chr3 30132061 30132344 -187904814 - L1MA8 LINE L1 -6 6285 5993 392 48 16 63 chr3 30132409 30132472 -187904686 - MADE1 DNA Mariner 0 80 21 356 333 30 0 chr3 30132479 30132713 -187904445 - L1ME3A LINE L1 -629 5541 5301 1439 170 0 0 chr3 30132734 30132958 -187904200 - AluJb SINE Alu -16 296 73 1029 230 0 5 chr3 30133058 30133267 -187903891 + L1M3 LINE L1 4773 4980 -1166 204 182 81 20 chr3 30133268 30133416 -187903742 + (TA)n Simple_repeat Simple_repeat 1 157 0 193 144 65 14 chr3 30133450 30133589 -187903569 + (TA)n Simple_repeat Simple_repeat 2 147 0 1154 203 55 93 chr3 30133589 30133958 -187903200 + L1M3 LINE L1 4969 5321 -859 1780 139 23 27 chr3 30133958 30134259 -187902899 + AluSx SINE Alu 4 303 -9 1154 203 55 93 chr3 30134259 30134463 -187902695 + L1M3 LINE L1 5321 5531 -649 3532 113 21 2 chr3 30134595 30135119 -187902039 - L1PA15 LINE L1 -5 6160 5627 21 0 0 0 chr3 30135246 30135267 -187901891 + AT_rich Low_complexity Low_complexity 1 21 0 2572 61 0 3 chr3 30135485 30135795 -187901363 - AluY SINE Alu -2 309 1 1871 125 56 11 chr3 30136236 30136523 -187900635 - AluJb SINE Alu -12 300 1 216 266 0 47 chr3 30136679 30136743 -187900415 - L2 LINE L2 -2 3311 3251 5684 18 0 0 chr3 30137509 30138168 -187898990 - L1P LINE L1 -1442 4704 4046 604 264 19 93 chr3 30138165 30138487 -187898671 - L1MDb LINE L1 -5338 1071 774 * 1305 332 56 38 chr3 30139247 30139960 -187897198 + L2 LINE L2 2032 2757 -557 672 129 0 0 chr3 30139970 30140071 -187897087 - AluSg/x SINE Alu -30 282 182 1882 153 0 3 chr3 30140184 30140471 -187896687 - AluJb SINE Alu -26 286 1 1016 282 32 42 chr3 30141109 30141489 -187895669 + LTR16A LTR ERVL 16 391 -59 206 250 36 71 chr3 30142643 30142727 -187894431 + MIR SINE MIR 170 250 -12 27 29 0 0 chr3 30143251 30143285 -187893873 + AT_rich Low_complexity Low_complexity 1 34 0 2993 283 70 3 chr3 30143632 30144307 -187892851 + MER72 LTR ERV1 1 720 -2 221 57 29 0 chr3 30144738 30144773 -187892385 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 213 178 0 0 chr3 30145205 30145250 -187891908 + T-rich Low_complexity Low_complexity 1 45 0 1009 164 19 39 chr3 30146151 30146358 -187890800 - MER3 DNA MER1_type 0 209 7 332 282 92 0 chr3 30147070 30147201 -187889957 - L2 LINE L2 -1282 2032 1890 480 18 0 0 chr3 30147734 30147791 -187889367 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 426 289 9 9 chr3 30148271 30148385 -187888773 - MIR SINE MIR -130 132 19 21 0 0 0 chr3 30148937 30148958 -187888200 + AT_rich Low_complexity Low_complexity 1 21 0 344 313 124 35 chr3 30149426 30149627 -187887531 - MIR SINE MIR -18 244 26 30 0 0 0 chr3 30152149 30152179 -187884979 + AT_rich Low_complexity Low_complexity 1 30 0 241 303 0 13 chr3 30152505 30152581 -187884577 + GA-rich Low_complexity Low_complexity 2 76 0 21 0 0 0 chr3 30152877 30152898 -187884260 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 30153230 30153252 -187883906 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 30154069 30154096 -187883062 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 30154243 30154269 -187882889 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr3 30154310 30154337 -187882821 + (A)n Simple_repeat Simple_repeat 1 27 0 201 159 0 0 chr3 30154700 30154744 -187882414 + A-rich Low_complexity Low_complexity 1 44 0 583 269 57 14 chr3 30155295 30155507 -187881651 + L3b LINE CR1 1104 1324 -259 189 322 17 0 chr3 30155664 30155723 -187881435 - MIR3 SINE MIR -5 203 144 793 221 13 72 chr3 30155726 30155961 -187881197 - MER58A DNA MER1_type 0 224 4 630 219 53 43 chr3 30155973 30156160 -187880998 - MER5A DNA MER1_type 0 189 1 1770 228 83 51 chr3 30156225 30156372 -187880786 + MLT1E2 LTR MaLR 9 150 -476 2005 105 4 0 chr3 30156372 30156639 -187880519 + AluY SINE Alu 24 291 -20 1770 228 83 51 chr3 30156639 30157078 -187880080 + MLT1E2 LTR MaLR 150 616 -10 640 35 23 0 chr3 30157378 30157465 -187879693 + (TC)n Simple_repeat Simple_repeat 1 89 0 1082 159 164 22 chr3 30159476 30159757 -187877401 - MER33 DNA MER1_type -12 312 1 624 293 29 39 chr3 30159901 30160210 -187876948 + MLT1H LTR MaLR 10 389 -206 1621 148 41 47 chr3 30160411 30160728 -187876430 - L1MC1 LINE L1 0 6333 6019 768 181 14 14 chr3 30160916 30161060 -187876098 - FRAM SINE Alu -21 155 12 280 238 59 20 chr3 30161291 30161392 -187875766 - L1MC1 LINE L1 -360 5806 5702 21 95 0 0 chr3 30161401 30161464 -187875694 + AT_rich Low_complexity Low_complexity 1 63 0 189 0 0 0 chr3 30162144 30162165 -187874993 + (A)n Simple_repeat Simple_repeat 1 21 0 447 200 350 0 chr3 30162703 30162843 -187874315 - MER5A DNA MER1_type 0 189 1 24 32 0 0 chr3 30163158 30163189 -187873969 + AT_rich Low_complexity Low_complexity 1 31 0 273 208 0 0 chr3 30163221 30163293 -187873865 + (CATA)n Simple_repeat Simple_repeat 1 72 0 996 196 16 0 chr3 30163684 30163868 -187873290 + MER5A DNA MER1_type 1 187 -2 314 375 82 35 chr3 30164000 30164598 -187872560 + L2 LINE L2 925 1550 -1764 2076 182 20 24 chr3 30164716 30165167 -187871991 - L1MB4 LINE L1 0 6180 5732 447 256 67 30 chr3 30165168 30165332 -187871826 - MIR SINE MIR -81 181 12 374 333 119 11 chr3 30166240 30166501 -187870657 + LTR16C LTR ERVL 200 488 -3 277 302 75 9 chr3 30166510 30166616 -187870542 + MIR SINE MIR 38 150 -58 1324 71 12 0 chr3 30166886 30167056 -187870102 - AluSg/x SINE Alu -4 306 135 2499 38 27 0 chr3 30167056 30167348 -187869810 - AluY SINE Alu -11 300 1 228 291 0 0 chr3 30167797 30167852 -187869306 + MIR SINE MIR 66 120 -142 218 325 57 15 chr3 30167959 30168053 -187869105 + MIR SINE MIR 23 116 -92 32 57 0 0 chr3 30168759 30168812 -187868346 + AT_rich Low_complexity Low_complexity 1 53 0 493 305 84 5 chr3 30168950 30169140 -187868018 - MIR SINE MIR -29 233 29 514 313 126 0 chr3 30169224 30169452 -187867706 + MIR SINE MIR 8 262 0 464 278 80 19 chr3 30170048 30170210 -187866948 + MIR SINE MIR 2 173 -89 369 290 101 18 chr3 30170207 30170376 -187866782 - L2 LINE L2 0 3313 3131 * 424 197 0 0 chr3 30170500 30170566 -187866592 + Charlie5 DNA MER1_type 2 67 -2545 4745 173 17 9 chr3 30170581 30171613 -187865545 + L1PB4 LINE L1 5103 6138 -18 7056 53 3 3 chr3 30171616 30172514 -187864644 + L1PA7 LINE L1 5256 6153 -1 827 161 90 5 chr3 30172601 30172812 -187864346 + Charlie5 DNA MER1_type 2335 2563 -49 2150 129 0 16 chr3 30172833 30173150 -187864008 - AluSx SINE Alu 0 312 1 459 287 0 8 chr3 30173223 30173345 -187863813 - L2 LINE L2 -251 3062 2942 283 209 52 163 chr3 30173558 30173730 -187863428 + MIR SINE MIR 33 185 -77 245 218 137 48 chr3 30173937 30174061 -187863097 + LTR33 LTR ERVL 6 140 -381 2437 86 34 23 chr3 30174175 30174526 -187862632 - THE1A LTR MaLR 0 355 1 11469 99 6 1 chr3 30174526 30176097 -187861061 - THE1A-int LTR MaLR 0 1580 1 2713 82 3 0 chr3 30176097 30176451 -187860707 - THE1A LTR MaLR 0 355 1 375 297 34 0 chr3 30176483 30176601 -187860557 + LTR33 LTR ERVL 385 506 -15 187 250 39 0 chr3 30176937 30176989 -187860169 - MIR SINE MIR -204 58 5 986 177 0 0 chr3 30177508 30177689 -187859469 - AluSg/x SINE Alu 0 313 133 523 259 77 28 chr3 30177694 30177837 -187859321 + L2 LINE L2 3164 3313 0 745 301 21 14 chr3 30177972 30178251 -187858907 - Charlie8 DNA MER1_type -2136 281 1 389 284 104 22 chr3 30178585 30178719 -187858439 - MIR3 SINE MIR -12 196 52 313 143 48 0 chr3 30179289 30179352 -187857806 - L1MB8 LINE L1 0 6178 6113 477 71 24 12 chr3 30179805 30179889 -187857269 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 442 261 60 27 chr3 30180937 30181121 -187856037 + MIR3 SINE MIR 8 197 -11 415 320 160 0 chr3 30181264 30181439 -187855719 - MIR SINE MIR -19 243 41 225 0 0 0 chr3 30181875 30181900 -187855258 + (CA)n Simple_repeat Simple_repeat 1 25 0 249 33 0 0 chr3 30182499 30182529 -187854629 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1659 245 40 21 chr3 30182745 30183275 -187853883 + L1ME1 LINE L1 5571 6110 -56 296 369 56 10 chr3 30183703 30183901 -187853257 - L3 LINE CR1 -10 1567 1361 198 205 96 108 chr3 30183969 30184052 -187853106 + MIR SINE MIR 59 140 -122 2539 53 0 0 chr3 30184053 30184354 -187852804 - AluY SINE Alu -10 301 1 23 68 0 0 chr3 30185532 30185576 -187851582 + AT_rich Low_complexity Low_complexity 1 44 0 224 328 40 52 chr3 30185768 30185942 -187851216 + L2 LINE L2 2488 2659 -655 3339 245 137 133 chr3 30186382 30187846 -187849312 + L2 LINE L2 373 1829 -1484 628 273 17 25 chr3 30187846 30188084 -187849074 - L1MA9 LINE L1 -38 6274 6039 3339 245 137 133 chr3 30188084 30188122 -187849036 + L2 LINE L2 1829 1865 -1448 2861 170 19 16 chr3 30188122 30188704 -187848454 - L1PB4 LINE L1 -7 6149 5566 3339 245 137 133 chr3 30188704 30189788 -187847370 + L2 LINE L2 1865 3237 -76 182 61 0 30 chr3 30189788 30189821 -187847337 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3339 245 137 133 chr3 30189821 30189851 -187847307 + L2 LINE L2 3237 3265 -48 1991 86 0 41 chr3 30189860 30190127 -187847031 + AluSc SINE Alu 6 261 -48 181 298 0 0 chr3 30190151 30190198 -187846960 + L2 LINE L2 3226 3272 0 248 234 31 47 chr3 30190487 30190551 -187846607 + L2 LINE L2 2685 2747 -567 2158 132 48 25 chr3 30190565 30190921 -187846237 + THE1B LTR MaLR 1 364 0 825 260 6 0 chr3 30190936 30191117 -187846041 - MER5A DNA MER1_type -6 183 2 761 292 36 20 chr3 30191472 30191722 -187845436 - MIR SINE MIR -6 256 3 353 268 41 0 chr3 30192150 30192247 -187844911 + MER5A DNA MER1_type 4 104 -85 3611 118 65 2 chr3 30192346 30192912 -187844246 + LTR43 LTR ERV1 1 602 0 331 244 64 0 chr3 30192928 30193006 -187844152 + MIR SINE MIR 66 148 -60 875 186 6 38 chr3 30193027 30193210 -187843948 - MER5B DNA MER1_type -1 177 1 912 171 10 93 chr3 30193224 30193292 -187843866 + MER5A DNA MER1_type 7 79 -110 1712 170 28 3 chr3 30193292 30193575 -187843583 + AluJo SINE Alu 1 290 -22 912 171 10 93 chr3 30193575 30193699 -187843459 + MER5A DNA MER1_type 79 183 -6 2288 90 3 3 chr3 30194831 30195131 -187842027 + AluSx SINE Alu 1 300 -12 7623 141 4 12 chr3 30196102 30197490 -187839668 + L1PA7 LINE L1 938 2314 -3832 261 0 0 0 chr3 30197636 30197665 -187839493 + (A)n Simple_repeat Simple_repeat 1 29 0 20847 98 46 0 chr3 30197665 30201473 -187835685 + L1PA7 LINE L1 2310 6170 0 303 265 210 19 chr3 30201733 30201895 -187835263 - MIR SINE MIR -19 243 51 * 419 304 143 51 chr3 30201887 30202160 -187834998 + L2 LINE L2 2999 3296 -17 182 150 25 0 chr3 30203093 30203133 -187834025 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 375 185 74 19 chr3 30203676 30203784 -187833374 - L2 LINE L2 -8 3305 3192 241 281 74 25 chr3 30204033 30204236 -187832922 - L1MC/D LINE L1 -2000 5808 5596 1877 164 25 25 chr3 30204490 30204857 -187832301 - L1MC1 LINE L1 0 6333 5967 669 146 8 0 chr3 30205012 30205135 -187832023 - L1P LINE L1 -940 5206 5083 3971 197 30 15 chr3 30205259 30206730 -187830428 - L1MB2 LINE L1 -3 6404 4910 1648 192 10 27 chr3 30206842 30207243 -187829915 - L1MB2 LINE L1 -5363 1021 628 11124 38 0 2 chr3 30207243 30209375 -187827783 - L1PA5 LINE L1 0 6154 4027 870 73 0 0 chr3 30209375 30209498 -187827660 + L1PA5 LINE L1 3898 4020 -2126 180 0 0 0 chr3 30211972 30211992 -187825166 + (CACCC)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr3 30213503 30213524 -187823634 + AT_rich Low_complexity Low_complexity 1 21 0 250 301 27 0 chr3 30213919 30213992 -187823166 - MIR SINE MIR -121 141 67 234 0 0 0 chr3 30214504 30214530 -187822628 + (TTG)n Simple_repeat Simple_repeat 3 28 0 1662 164 57 11 chr3 30214554 30214907 -187822251 - L1MA7 LINE L1 -261 6030 5662 741 291 51 33 chr3 30215274 30215607 -187821551 + L2 LINE L2 2975 3313 0 361 369 108 21 chr3 30215888 30216175 -187820983 + L2 LINE L2 2563 2874 -440 250 197 0 145 chr3 30216507 30216583 -187820575 - L2 LINE L2 0 3313 3249 1890 302 67 30 chr3 30216596 30217423 -187819735 - L2 LINE L2 -365 2949 2093 2022 124 0 40 chr3 30217858 30218180 -187818978 - AluSx SINE Alu -3 309 1 426 256 60 17 chr3 30218306 30218423 -187818735 - L2 LINE L2 -1 3312 3191 399 310 32 26 chr3 30218515 30218670 -187818488 + L2 LINE L2 3158 3313 0 28 0 0 0 chr3 30221165 30221193 -187815965 + AT_rich Low_complexity Low_complexity 1 28 0 1894 227 13 15 chr3 30221221 30221680 -187815478 + MLT1F LTR MaLR 85 542 0 300 318 0 0 chr3 30221959 30222044 -187815114 - Charlie8 DNA MER1_type -2171 246 162 2447 101 0 0 chr3 30222168 30222475 -187814683 - AluSc SINE Alu -2 307 1 310 275 46 30 chr3 30222633 30222764 -187814394 + L2 LINE L2 2926 3058 -214 519 314 58 25 chr3 30222937 30223179 -187813979 + LTR16A LTR ERVL 18 267 -183 306 150 75 0 chr3 30223215 30223295 -187813863 + LTR16A LTR ERVL 339 424 -26 415 350 93 53 chr3 30224167 30224598 -187812560 - L2 LINE L2 0 3272 2825 189 0 0 0 chr3 30225516 30225537 -187811621 + (GA)n Simple_repeat Simple_repeat 1 21 0 261 57 0 0 chr3 30226021 30226056 -187811102 + (GA)n Simple_repeat Simple_repeat 2 36 0 218 351 135 27 chr3 30227740 30227925 -187809233 + L2 LINE L2 3068 3272 0 2858 180 31 54 chr3 30228655 30229271 -187807887 + L1M4c LINE L1 20 621 -5763 198 0 0 0 chr3 30229274 30229296 -187807862 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 425 275 8 36 chr3 30229534 30229713 -187807445 - MIR SINE MIR -63 145 21 1671 184 29 29 chr3 30229980 30230354 -187806804 + MLT1A2 LTR MaLR 1 374 0 328 309 32 65 chr3 30230596 30230824 -187806334 + MIR SINE MIR 31 245 -17 593 280 74 34 chr3 30230897 30231317 -187805841 - LTR33A LTR ERVL -25 498 2 241 353 12 0 chr3 30231477 30231562 -187805596 + MIR SINE MIR 39 124 -138 324 284 114 52 chr3 30232701 30232774 -187804384 - MIR SINE MIR -19 243 176 601 271 6 22 chr3 30232774 30232955 -187804203 + MER5B DNA MER1_type 1 178 0 324 284 114 52 chr3 30232955 30233092 -187804066 - MIR SINE MIR -86 176 20 461 274 159 25 chr3 30233327 30233484 -187803674 - MER5A DNA MER1_type -3 186 9 407 313 18 0 chr3 30233618 30233730 -187803428 + MER81 DNA DNA 1 114 0 508 313 38 33 chr3 30233741 30233952 -187803206 + MIR SINE MIR 48 259 -3 204 226 0 19 chr3 30234473 30234526 -187802632 + L2 LINE L2 3214 3265 -7 204 270 131 73 chr3 30235173 30235310 -187801848 + MIR SINE MIR 84 228 -34 * 483 326 116 5 chr3 30235271 30235495 -187801663 - MIR SINE MIR 0 262 14 240 35 0 0 chr3 30236273 30236302 -187800856 + (TG)n Simple_repeat Simple_repeat 2 30 0 311 243 199 58 chr3 30236387 30236557 -187800601 - L1MC/D LINE L1 -1982 5826 5615 2142 95 0 0 chr3 30236557 30236830 -187800328 + AluSx SINE Alu 29 301 -11 311 243 199 58 chr3 30236830 30236885 -187800273 - L1MC/D LINE L1 -2193 5615 5569 25 0 0 0 chr3 30237392 30237417 -187799741 + AT_rich Low_complexity Low_complexity 1 25 0 258 289 0 74 chr3 30237546 30237667 -187799491 - MIR SINE MIR -49 213 102 227 307 18 61 chr3 30238315 30238429 -187798729 - MIR SINE MIR -62 146 38 285 266 156 9 chr3 30238495 30238604 -187798554 - MIR SINE MIR -79 183 59 205 304 87 0 chr3 30238673 30238742 -187798416 + L3 LINE CR1 1501 1575 -2 280 324 0 0 chr3 30239509 30239580 -187797578 + MER5A DNA MER1_type 81 151 -38 336 332 62 26 chr3 30239604 30240364 -187796794 + L1M4 LINE L1 4561 5347 -799 * 1863 237 21 2 chr3 30240361 30240833 -187796325 + L1M4 LINE L1 4627 5107 -1039 2525 87 5 14 chr3 30240952 30241321 -187795837 + L1PA11 LINE L1 5809 6174 0 230 334 108 39 chr3 30241482 30241787 -187795371 - L2 LINE L2 -737 2577 2252 499 258 111 42 chr3 30241788 30241978 -187795180 + MER63A DNA MER1_type 2 204 -6 201 162 0 0 chr3 30242262 30242299 -187794859 + A-rich Low_complexity Low_complexity 4 40 0 27 29 0 0 chr3 30242739 30242773 -187794385 + AT_rich Low_complexity Low_complexity 1 34 0 666 290 53 32 chr3 30242926 30243305 -187793853 - L1ME4a LINE L1 -249 5872 5486 28 0 0 0 chr3 30244160 30244188 -187792970 + AT_rich Low_complexity Low_complexity 1 28 0 352 309 14 22 chr3 30244505 30244644 -187792514 + MLT1H LTR MaLR 24 161 -388 378 189 50 151 chr3 30244796 30244955 -187792203 + MLT1H LTR MaLR 407 549 0 41 0 0 0 chr3 30245549 30245590 -187791568 + AT_rich Low_complexity Low_complexity 1 41 0 335 321 0 0 chr3 30247018 30247124 -187790034 - MIR SINE MIR 0 262 157 273 341 37 12 chr3 30249210 30249340 -187787818 - MIR SINE MIR -27 181 47 196 264 48 104 chr3 30249447 30249572 -187787586 + MIR SINE MIR 72 189 -73 21 0 0 0 chr3 30250612 30250633 -187786525 + AT_rich Low_complexity Low_complexity 1 21 0 415 194 31 10 chr3 30251408 30251506 -187785652 - MER96B DNA MER1_type? -1 416 317 26 64 0 0 chr3 30251506 30251553 -187785605 + AT_rich Low_complexity Low_complexity 1 47 0 1373 175 35 32 chr3 30251574 30251888 -187785270 + MER96B DNA MER1_type? 93 407 -10 1593 181 30 79 chr3 30252092 30252523 -187784635 - L1MA9 LINE L1 -1 6311 5902 310 254 174 22 chr3 30252764 30252902 -187784256 - MIR SINE MIR -56 206 48 21 0 0 0 chr3 30253662 30253683 -187783475 + AT_rich Low_complexity Low_complexity 1 21 0 284 306 99 0 chr3 30253700 30253811 -187783347 + HAL1 LINE L1 19 140 -2367 497 280 73 71 chr3 30254126 30254494 -187782664 + HAL1 LINE L1 532 900 -1607 1137 35 0 0 chr3 30254564 30254705 -187782453 + AluY SINE Alu 171 311 0 325 301 46 31 chr3 30254735 30254931 -187782227 + HAL1 LINE L1 971 1169 -1338 1962 113 4 4 chr3 30254933 30255208 -187781950 + AluSx SINE Alu 4 278 -34 883 275 121 67 chr3 30255428 30256232 -187780926 + HAL1 LINE L1 1654 2500 -7 207 232 0 0 chr3 30256234 30256290 -187780868 + (CA)n Simple_repeat Simple_repeat 1 56 0 330 228 79 26 chr3 30257138 30257252 -187779906 + L1ME4a LINE L1 6000 6119 -2 2224 101 0 0 chr3 30258469 30258766 -187778392 - AluSc SINE Alu -12 297 1 968 220 5 5 chr3 30259093 30259293 -187777865 + MER58A DNA MER1_type 14 213 -11 387 274 112 46 chr3 30310714 30311383 -187725775 + L1M4 LINE L1 2636 3348 -2798 256 258 70 39 chr3 30312128 30312256 -187724902 + L1M1 LINE L1 5311 5442 -860 1760 170 7 16 chr3 30312280 30312586 -187724572 + AluJb SINE Alu 1 303 -9 2196 108 0 3 chr3 30312675 30312972 -187724186 - AluY SINE Alu -15 296 1 674 294 33 22 chr3 30313054 30313476 -187723682 + L1ME3A LINE L1 5518 5945 -225 207 100 0 0 chr3 30314037 30314067 -187723091 + (CA)n Simple_repeat Simple_repeat 2 31 0 235 259 0 0 chr3 30315069 30315123 -187722035 + (TA)n Simple_repeat Simple_repeat 2 55 0 406 283 156 30 chr3 30316004 30316273 -187720885 - MLT1L LTR MaLR -4 611 309 1657 138 32 44 chr3 30316371 30316712 -187720446 + MER1B DNA MER1_type 1 337 0 24 0 0 0 chr3 30317416 30317440 -187719718 + AT_rich Low_complexity Low_complexity 1 24 0 342 336 18 9 chr3 30317504 30317614 -187719544 + MIR SINE MIR 17 127 -135 280 0 182 0 chr3 30317618 30317662 -187719496 - MADE1 DNA Mariner -1 79 28 284 308 19 28 chr3 30317663 30317770 -187719388 + MIR SINE MIR 141 246 -16 209 211 53 0 chr3 30317921 30317978 -187719180 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 338 264 23 11 chr3 30319161 30319248 -187717910 - L2 LINE L2 -2 3311 3224 2070 221 48 13 chr3 30319254 30319729 -187717429 - MLT1D LTR MaLR -2 503 12 762 280 143 28 chr3 30319742 30320314 -187716844 - L2 LINE L2 -107 3206 2579 615 65 0 0 chr3 30320353 30320430 -187716728 + MADE1 DNA Mariner 4 80 0 1925 144 10 0 chr3 30320443 30320735 -187716423 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr3 30321744 30321781 -187715377 + AT_rich Low_complexity Low_complexity 1 37 0 236 339 105 29 chr3 30323245 30323416 -187713742 + L3 LINE CR1 1393 1576 -1 411 250 31 62 chr3 30323672 30323800 -187713358 - L2 LINE L2 0 3313 3190 685 257 180 80 chr3 30323822 30324273 -187712885 + MLT1D LTR MaLR 3 498 -7 269 345 37 12 chr3 30324275 30324436 -187712722 + MIR SINE MIR 13 145 -63 1601 150 129 24 chr3 30325289 30325622 -187711536 + THE1C LTR MaLR 8 375 0 1109 214 68 21 chr3 30327140 30327421 -187709737 - MER58B DNA MER1_type 0 341 48 243 265 254 6 chr3 30327852 30328033 -187709125 - MLT1H LTR MaLR -19 530 305 450 236 147 61 chr3 30328051 30328192 -187708966 - MLT1H LTR MaLR -326 204 91 2252 122 0 0 chr3 30328192 30328487 -187708671 + AluSc SINE Alu 1 295 -14 450 236 147 61 chr3 30328487 30328585 -187708573 - MLT1H LTR MaLR -439 91 3 469 271 110 7 chr3 30329318 30329473 -187707685 - MER104 DNA Tc2 0 180 10 232 315 37 28 chr3 30329529 30329637 -187707521 - MIR SINE MIR -50 212 104 22 0 0 0 chr3 30329637 30329659 -187707499 + AT_rich Low_complexity Low_complexity 1 22 0 586 338 32 32 chr3 30330142 30330512 -187706646 - MLT1I LTR MaLR -2 407 38 562 306 40 30 chr3 30331725 30332026 -187705132 - L1MC4a LINE L1 -1892 5916 5613 294 217 0 0 chr3 30332502 30332571 -187704587 + (TA)n Simple_repeat Simple_repeat 2 70 0 30 109 0 0 chr3 30332579 30332707 -187704451 + AT_rich Low_complexity Low_complexity 1 128 0 255 274 96 14 chr3 30332788 30332861 -187704297 - MLT1I LTR MaLR -105 304 226 220 238 8 127 chr3 30334705 30334831 -187702327 - MIR SINE MIR -44 218 108 203 161 0 0 chr3 30335620 30335651 -187701507 + A-rich Low_complexity Low_complexity 4 34 0 207 161 0 0 chr3 30336006 30336037 -187701121 + polypyrimidine Low_complexity Low_complexity 6 36 0 184 347 14 28 chr3 30337560 30337632 -187699526 - MIR SINE MIR -115 93 23 239 91 0 0 chr3 30338327 30338360 -187698798 - MER3 DNA MER1_type -161 48 16 2580 178 28 46 chr3 30338425 30338992 -187698166 - L1MB1 LINE L1 -1 6167 5611 1716 182 51 2 chr3 30338987 30339416 -187697742 + L1 LINE L1 3119 3568 -2578 * 23 33 0 0 chr3 30340062 30340092 -187697066 + AT_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr3 30340202 30340228 -187696930 + (T)n Simple_repeat Simple_repeat 1 26 0 1350 179 13 4 chr3 30340409 30340644 -187696514 - AluJo SINE Alu -75 237 1 322 208 30 10 chr3 30340644 30340745 -187696413 - Charlie2 DNA MER1_type -88 2774 2672 1164 327 50 40 chr3 30340802 30341866 -187695292 + L1MEc LINE L1 55 1129 -5267 1135 230 53 13 chr3 30341890 30342194 -187694964 + L1ME3 LINE L1 5504 5819 -347 192 77 0 0 chr3 30342696 30342722 -187694436 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 308 326 68 15 chr3 30344262 30344394 -187692764 + MIR SINE MIR 53 191 -71 767 232 68 12 chr3 30344444 30344694 -187692464 + L1ME3 LINE L1 5896 6159 -3 602 232 129 0 chr3 30345038 30345193 -187691965 + MER45A DNA AcHobo 3 177 -1 283 290 0 0 chr3 30345323 30345385 -187691773 + L2 LINE L2 3246 3307 -6 1287 283 139 29 chr3 30346788 30347349 -187689809 + L2 LINE L2 2039 2661 -653 236 303 32 32 chr3 30347637 30347792 -187689366 + L2 LINE L2 3011 3165 -148 339 82 0 0 chr3 30347855 30347904 -187689254 + MLT2A2 LTR ERVL 1 49 -404 360 194 28 0 chr3 30347905 30347977 -187689181 + L2 LINE L2 3209 3282 -31 1175 148 16 0 chr3 30348585 30348774 -187688384 + AluSc SINE Alu 104 295 -14 1897 179 16 25 chr3 30348969 30349337 -187687821 + MLT1A1 LTR MaLR 1 365 0 607 292 67 5 chr3 30350783 30350992 -187686166 - MER58A DNA MER1_type 0 224 3 452 253 213 13 chr3 30354481 30354631 -187682527 - MER5A DNA MER1_type -6 183 4 281 314 137 11 chr3 30355017 30355192 -187681966 + MIR SINE MIR 54 250 -12 288 0 0 0 chr3 30355646 30355678 -187681480 + (T)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr3 30356592 30356629 -187680529 + AT_rich Low_complexity Low_complexity 1 37 0 2102 108 0 10 chr3 30356771 30357067 -187680091 + AluSq SINE Alu 1 293 -20 786 145 99 29 chr3 30357113 30357285 -187679873 - MER5A DNA MER1_type -5 184 1 592 189 88 40 chr3 30357500 30357564 -187679594 + MER5B DNA MER1_type 21 81 -97 1082 217 94 60 chr3 30357564 30357947 -187679211 - MSTD LTR MaLR 0 396 1 592 189 88 40 chr3 30357947 30358030 -187679128 + MER5B DNA MER1_type 81 175 -3 744 210 155 0 chr3 30358396 30358577 -187678581 + MER3 DNA MER1_type 1 209 0 736 244 56 5 chr3 30358729 30358942 -187678216 - MER58A DNA MER1_type 0 224 1 1086 317 101 21 chr3 30361436 30362160 -187674998 + L2 LINE L2 2534 3313 0 291 283 29 43 chr3 30362169 30362307 -187674851 + Charlie7 DNA MER1_type 2129 2264 -348 2207 77 31 3 chr3 30362324 30362610 -187674548 + AluSq SINE Alu 1 294 -19 31 88 0 0 chr3 30362619 30362699 -187674459 + AT_rich Low_complexity Low_complexity 1 80 0 227 305 114 8 chr3 30363862 30363993 -187673165 - MIR SINE MIR -60 202 58 4717 177 6 22 chr3 30364073 30365121 -187672037 - L1MB1 LINE L1 0 6168 5136 2681 188 19 83 chr3 30365133 30365884 -187671274 - L1MB1 LINE L1 -1322 4824 4122 404 240 16 33 chr3 30366422 30366543 -187670615 + MER5C DNA MER1_type 2 120 -204 290 233 0 58 chr3 30366575 30366661 -187670497 + MER5C DNA MER1_type 244 324 0 183 333 35 23 chr3 30366730 30366754 -187670404 - MIR SINE MIR -111 151 129 216 97 0 0 chr3 30366754 30366785 -187670373 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 183 333 35 23 chr3 30366785 30366847 -187670311 - MIR SINE MIR -133 129 64 25 0 0 0 chr3 30367056 30367081 -187670077 + AT_rich Low_complexity Low_complexity 1 25 0 308 256 90 0 chr3 30367152 30367230 -187669928 - L2 LINE L2 -3 3269 3185 267 195 49 24 chr3 30368614 30368696 -187668462 + HsTC2 DNA Tc2 3 86 -1812 231 260 0 0 chr3 30368681 30368731 -187668427 + HsTC2 DNA Tc2 1849 1898 0 * 661 289 37 11 chr3 30368731 30368921 -187668237 - MIR SINE MIR -67 195 1 294 265 194 18 chr3 30369155 30369325 -187667833 - L1ME LINE L1 -303 5818 5619 335 263 197 26 chr3 30370775 30370830 -187666328 + MER5A DNA MER1_type 12 56 -133 14576 136 23 2 chr3 30370830 30373199 -187663959 + Tigger1 DNA MER2_type 1 2418 0 335 263 197 26 chr3 30373199 30373295 -187663863 + MER5A DNA MER1_type 56 189 0 31 0 0 0 chr3 30373881 30373912 -187663246 + AT_rich Low_complexity Low_complexity 1 31 0 189 209 15 75 chr3 30373987 30374054 -187663104 + MIR SINE MIR 83 145 -63 2413 230 80 85 chr3 30375071 30375469 -187661689 - MER63C DNA MER1_type -131 929 531 655 296 9 22 chr3 30375469 30375692 -187661466 + MER58A DNA MER1_type 4 223 -1 2413 230 80 85 chr3 30375692 30376296 -187660862 - MER63C DNA MER1_type -529 531 63 1297 198 41 16 chr3 30376300 30376328 -187660830 - MLT2D LTR ERVL -8 389 363 384 40 0 0 chr3 30376328 30376378 -187660780 + (TG)n Simple_repeat Simple_repeat 2 51 0 1297 198 41 16 chr3 30376378 30376707 -187660451 - MLT2D LTR ERVL -34 363 1 21 36 0 0 chr3 30378106 30378134 -187659024 + AT_rich Low_complexity Low_complexity 1 28 0 207 341 181 15 chr3 30379096 30379301 -187657857 - L2 LINE L2 -1367 1947 1709 1548 184 109 48 chr3 30380313 30380753 -187656405 - MLT1C LTR MaLR 0 467 1 2383 84 0 0 chr3 30380937 30381245 -187655913 + AluSx SINE Alu 1 308 -4 276 331 112 58 chr3 30381577 30381819 -187655339 + MIR SINE MIR 8 262 0 21 0 0 0 chr3 30381922 30381943 -187655215 + AT_rich Low_complexity Low_complexity 1 21 0 360 327 92 32 chr3 30382014 30382231 -187654927 + L2 LINE L2 3084 3313 0 25 0 0 0 chr3 30383255 30383280 -187653878 + AT_rich Low_complexity Low_complexity 1 25 0 338 293 102 32 chr3 30383471 30383628 -187653530 - MER112 DNA MER1_type -89 171 4 286 344 56 8 chr3 30383639 30383764 -187653394 + MIR SINE MIR 20 150 -112 22 35 0 0 chr3 30384944 30384973 -187652185 + AT_rich Low_complexity Low_complexity 1 29 0 2014 122 3 44 chr3 30385920 30386241 -187650917 - AluSx SINE Alu -4 308 1 244 368 13 0 chr3 30387006 30387082 -187650076 + LTR67 LTR ERVL 114 190 -367 297 320 30 0 chr3 30387818 30387918 -187649240 + ERVL LTR ERVL 4962 5064 -700 554 257 63 27 chr3 30389378 30389600 -187647558 - MLT1L LTR MaLR -221 394 165 957 231 0 44 chr3 30389640 30389869 -187647289 + MER20 DNA MER1_type 1 219 0 879 233 5 5 chr3 30389986 30390175 -187646983 - MER5A DNA MER1_type 0 189 1 187 286 43 14 chr3 30390206 30390276 -187646882 + MIR SINE MIR 71 142 -120 380 265 85 7 chr3 30390646 30390819 -187646339 + L1ME LINE L1 5317 5499 -622 344 264 47 0 chr3 30391474 30391580 -187645578 - MIR SINE MIR -65 197 87 271 291 284 0 chr3 30391660 30391801 -187645357 - MIR SINE MIR -2 260 80 420 70 0 0 chr3 30391809 30391866 -187645292 - Alu SINE Alu -243 68 12 404 241 112 0 chr3 30392139 30392255 -187644903 - MIR SINE MIR -34 228 100 269 271 18 118 chr3 30392927 30393097 -187644061 - MIR3 SINE MIR -18 190 38 924 32 0 48 chr3 30393336 30393460 -187643698 + L1PA3 LINE L1 6038 6155 0 522 241 38 8 chr3 30394141 30394274 -187642884 + L1ME1 LINE L1 6024 6160 -6 2238 109 0 3 chr3 30394623 30394927 -187642231 + AluSc SINE Alu 1 303 -6 304 313 10 10 chr3 30395133 30395229 -187641929 + MIR3 SINE MIR 92 187 -21 207 0 0 0 chr3 30395806 30395829 -187641329 + (A)n Simple_repeat Simple_repeat 1 23 0 256 280 154 16 chr3 30396191 30396290 -187640868 + LTR37B LTR ERV1 7 91 -377 198 0 0 0 chr3 30396290 30396312 -187640846 + (TA)n Simple_repeat Simple_repeat 2 23 0 256 280 154 16 chr3 30396312 30396394 -187640764 + LTR37B LTR ERV1 91 213 -255 230 241 17 0 chr3 30398107 30398165 -187638993 - L1M4 LINE L1 -433 5751 5693 501 32 0 0 chr3 30398719 30398782 -187638376 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 265 334 119 59 chr3 30398995 30399315 -187637843 - L2 LINE L2 0 3272 2934 207 0 0 0 chr3 30400685 30400708 -187636450 + (CA)n Simple_repeat Simple_repeat 2 24 0 398 316 47 7 chr3 30402011 30402161 -187634997 + MIR SINE MIR 35 189 -73 1002 266 136 16 chr3 30402598 30402974 -187634184 + MER110 LTR ERV1 71 491 0 223 274 20 0 chr3 30404046 30404097 -187633061 - L2 LINE L2 -4 3268 3217 209 213 0 0 chr3 30404971 30405018 -187632140 + T-rich Low_complexity Low_complexity 1 47 0 280 339 69 21 chr3 30407418 30407607 -187629551 - L1M4 LINE L1 -476 5645 5448 2004 131 0 0 chr3 30407750 30408040 -187629118 + AluSx SINE Alu 1 290 -22 246 62 0 0 chr3 30409776 30409808 -187627350 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 218 338 95 34 chr3 30409808 30409947 -187627211 - L2 LINE L2 -10 3262 3112 589 199 44 15 chr3 30409964 30410100 -187627058 + L1ME2 LINE L1 6024 6163 -1 334 225 108 33 chr3 30410168 30410288 -187626870 - MER103 DNA DNA -37 129 1 561 215 114 0 chr3 30410620 30410807 -187626351 + MER58C DNA MER1_type 1 215 0 247 274 89 32 chr3 30411079 30411203 -187625955 - L2 LINE L2 -1036 2278 2148 2382 49 3 30 chr3 30411539 30411844 -187625314 + AluY SINE Alu 6 302 -9 1584 204 13 30 chr3 30412281 30412678 -187624480 + L1 LINE L1 3331 3720 -2426 4877 173 51 10 chr3 30412678 30413640 -187623518 + L1PA16 LINE L1 4430 5488 -678 1817 37 0 0 chr3 30413640 30413858 -187623300 - L1PA5 LINE L1 -6 6148 5931 4877 173 51 10 chr3 30413858 30414563 -187622595 + L1PA16 LINE L1 5488 6163 -3 2412 244 84 22 chr3 30414731 30415543 -187621615 + L1MD1 LINE L1 3 999 -5541 2389 231 53 29 chr3 30415540 30416733 -187620425 + L1MD1 LINE L1 4815 6045 -708 * 3672 57 11 2 chr3 30416740 30417217 -187619941 - L1PA7 LINE L1 -1 6153 5673 2322 76 0 0 chr3 30417221 30417538 -187619620 + L1P LINE L1 4962 5278 -868 2132 189 40 17 chr3 30417538 30417941 -187619217 + MSTB1 LTR MaLR 19 430 -2 773 267 37 0 chr3 30417950 30418141 -187619017 + L1MD1 LINE L1 6023 6220 -416 852 286 97 0 chr3 30418172 30418542 -187618616 + L1MDa LINE L1 2611 3016 -3524 1013 252 52 0 chr3 30418542 30418792 -187618366 + AluJo SINE Alu 1 263 -49 827 140 19 0 chr3 30418805 30419050 -187618108 + GA-rich Low_complexity Low_complexity 1 249 0 373 268 10 0 chr3 30419055 30419152 -187618006 + L1MDa LINE L1 3007 3104 -3436 6116 263 38 6 chr3 30419159 30421100 -187616058 + L1MDa LINE L1 3593 5595 -945 2305 226 86 12 chr3 30421100 30422469 -187614689 + L1MB8 LINE L1 4650 6177 -1 2389 67 0 19 chr3 30422480 30422795 -187614363 + AluY SINE Alu 1 309 -2 318 346 39 6 chr3 30424428 30424584 -187612574 + MIR SINE MIR 102 262 0 477 293 144 0 chr3 30425903 30426091 -187611067 - MIR SINE MIR -5 257 43 376 219 45 71 chr3 30427134 30427289 -187609869 + L2 LINE L2 3115 3265 -48 24 77 0 0 chr3 30428181 30428233 -187608925 + AT_rich Low_complexity Low_complexity 1 52 0 302 250 42 90 chr3 30429805 30429949 -187607209 - MIR SINE MIR -1 261 125 347 267 43 26 chr3 30430929 30431045 -187606113 + MIR SINE MIR 94 211 -51 387 263 71 75 chr3 30431101 30431367 -187605791 - L2 LINE L2 -3 3310 3046 258 317 61 0 chr3 30431742 30431824 -187605334 + MIR SINE MIR 5 91 -171 2564 59 0 0 chr3 30432091 30432397 -187604761 - AluY SINE Alu -5 306 1 22 35 0 0 chr3 30432472 30432501 -187604657 + AT_rich Low_complexity Low_complexity 1 29 0 237 246 0 0 chr3 30433874 30433939 -187603219 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 22 56 0 0 chr3 30434638 30434674 -187602484 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr3 30435343 30435391 -187601767 + AT_rich Low_complexity Low_complexity 1 48 0 200 188 0 0 chr3 30435697 30435729 -187601429 + (TG)n Simple_repeat Simple_repeat 1 32 0 231 156 0 0 chr3 30435729 30435774 -187601384 - L1MC4 LINE L1 -1340 6702 6658 311 145 14 0 chr3 30435777 30435846 -187601312 + GA-rich Low_complexity Low_complexity 1 70 0 258 298 196 6 chr3 30436024 30436192 -187600966 + MIR SINE MIR 53 252 -10 395 297 36 72 chr3 30437097 30437150 -187600008 - L1ME4a LINE L1 -224 5897 5844 2044 141 0 6 chr3 30437150 30437462 -187599696 + AluSx SINE Alu 1 310 -2 395 297 36 72 chr3 30437462 30437714 -187599444 - L1ME4a LINE L1 -277 5844 5603 2002 110 4 4 chr3 30437947 30438250 -187598908 - AluSg SINE Alu 0 303 1 21 36 0 0 chr3 30438616 30438644 -187598514 + AT_rich Low_complexity Low_complexity 1 28 0 315 205 77 0 chr3 30439418 30439496 -187597662 - LTR68 LTR ERV1 -636 104 21 182 36 0 36 chr3 30440130 30440158 -187597000 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 8940 86 11 5 chr3 30440158 30442198 -187594960 - L1PA7 LINE L1 0 6154 4106 498 294 105 0 chr3 30443094 30443237 -187593921 + MIR SINE MIR 32 189 -73 218 284 15 0 chr3 30444773 30444840 -187592318 + MIR SINE MIR 99 166 -96 1989 231 53 27 chr3 30445078 30445603 -187591555 - MER119 DNA MER1_type -2 581 43 1380 222 3 7 chr3 30446504 30446858 -187590300 + AluJb SINE Alu 1 353 0 23 0 0 0 chr3 30446963 30446986 -187590172 + AT_rich Low_complexity Low_complexity 1 23 0 2417 101 5 41 chr3 30447509 30447877 -187589281 + THE1A LTR MaLR 1 355 0 2046 89 7 0 chr3 30447877 30448159 -187588999 + THE1A-int LTR MaLR 1 284 -1296 329 367 105 4 chr3 30448892 30449121 -187588037 + MIR SINE MIR 11 262 0 225 328 0 0 chr3 30450416 30450480 -187586678 + L2 LINE L2 3210 3273 -40 5320 153 28 56 chr3 30450480 30451819 -187585339 + L1MA5 LINE L1 4978 6300 0 22 0 0 0 chr3 30451969 30451991 -187585167 + AT_rich Low_complexity Low_complexity 1 22 0 676 388 57 25 chr3 30452415 30453122 -187584036 - L2 LINE L2 -337 2977 2249 229 308 0 13 chr3 30453428 30453506 -187583652 + MER103 DNA DNA 23 99 -67 273 57 0 0 chr3 30455013 30455048 -187582110 + (A)n Simple_repeat Simple_repeat 1 35 0 2385 88 0 7 chr3 30455066 30455374 -187581784 - AluSx SINE Alu -6 306 1 239 277 92 8 chr3 30455735 30455854 -187581304 + MIR SINE MIR 68 196 -66 345 275 11 11 chr3 30455895 30455986 -187581172 - L2 LINE L2 -8 3264 3174 1452 219 61 58 chr3 30456047 30456586 -187580572 + L1MC4 LINE L1 7502 8042 0 1838 138 0 68 chr3 30457167 30457492 -187579666 - AluSx SINE Alu -9 303 1 20238 169 41 17 chr3 30458385 30459105 -187578053 + L1M1 LINE L1 13 715 -6850 207 0 0 0 chr3 30459105 30459128 -187578030 + (GGAGA)n Simple_repeat Simple_repeat 4 26 0 20238 169 41 17 chr3 30459128 30459815 -187577343 + L1M1 LINE L1 715 1384 -6181 1639 151 127 6 chr3 30459815 30460147 -187577011 + THE1C LTR MaLR 1 372 -3 20238 169 41 17 chr3 30460147 30463749 -187573409 + L1M1 LINE L1 1384 5150 -2415 1877 253 48 42 chr3 30464049 30464524 -187572634 - L1M4 LINE L1 -1355 4791 4307 1677 182 0 14 chr3 30464524 30464810 -187572348 - AluJo SINE Alu -24 288 7 1877 253 48 42 chr3 30464810 30465232 -187571926 - L1M4 LINE L1 -1839 4307 3889 2368 29 0 7 chr3 30465233 30465508 -187571650 - AluY SINE Alu 0 311 39 16954 139 24 13 chr3 30465508 30465907 -187571251 + L1P LINE L1 1832 2225 -3921 1976 130 32 0 chr3 30465907 30466192 -187570966 + AluSx SINE Alu 1 294 -18 16954 139 24 13 chr3 30466192 30466343 -187570815 + L1P LINE L1 2225 2373 -3773 1662 164 57 33 chr3 30466343 30466709 -187570449 + THE1C LTR MaLR 1 375 0 16954 139 24 13 chr3 30466709 30469054 -187568104 + L1P LINE L1 2373 4761 -1385 681 211 0 40 chr3 30469318 30469470 -187567688 - MER45A DNA AcHobo 0 178 33 1589 209 27 9 chr3 30469473 30469808 -187567350 - MLT1A1 LTR MaLR -2 363 23 219 381 9 0 chr3 30470082 30470187 -187566971 - MER5B DNA MER1_type -5 173 68 10368 73 17 3 chr3 30470829 30473004 -187564154 - L1PA6 LINE L1 -3 6151 3942 1570 148 0 0 chr3 30473165 30473401 -187563757 - MLT1A1 LTR MaLR 0 365 130 620 180 55 65 chr3 30473695 30473928 -187563230 + LTR45B LTR ERV1 324 525 0 714 119 0 0 chr3 30473934 30474035 -187563123 - MLT1A1 LTR MaLR -264 101 1 243 125 0 0 chr3 30474125 30474165 -187562993 + (GA)n Simple_repeat Simple_repeat 2 41 0 293 253 210 31 chr3 30474165 30474327 -187562831 + MLT1K LTR MaLR 395 585 -3 216 97 0 0 chr3 30475961 30475992 -187561166 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 375 302 26 42 chr3 30476264 30476456 -187560702 + L2 LINE L2 2665 2853 -461 662 68 0 0 chr3 30476474 30476562 -187560596 - L1PA16 LINE L1 -10 6156 6069 914 235 38 118 chr3 30476675 30477247 -187559911 + L2 LINE L2 2778 3312 -1 205 347 61 0 chr3 30477256 30477354 -187559804 - L2 LINE L2 -256 3057 2954 797 267 32 14 chr3 30477384 30477397 -187559761 - MIR SINE MIR -36 226 215 2487 80 0 0 chr3 30477397 30477709 -187559449 - AluSq SINE Alu -1 312 1 797 267 32 14 chr3 30477709 30477916 -187559242 - MIR SINE MIR -47 215 2 489 327 88 33 chr3 30477922 30478228 -187558930 - L2 LINE L2 -359 2955 2633 21 57 0 0 chr3 30478263 30478298 -187558860 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr3 30478361 30478389 -187558769 + AT_rich Low_complexity Low_complexity 1 28 0 650 242 13 0 chr3 30478529 30478682 -187558476 - L1MB7 LINE L1 0 6184 6030 2288 107 0 3 chr3 30478693 30478991 -187558167 + AluSg SINE Alu 2 298 -12 479 271 29 0 chr3 30479232 30479372 -187557786 - MIR SINE MIR -2 260 117 21 57 0 0 chr3 30480176 30480211 -187556947 + AT_rich Low_complexity Low_complexity 1 35 0 2127 90 0 4 chr3 30480362 30480669 -187556489 + AluSc SINE Alu 3 308 0 1228 93 0 83 chr3 30480669 30480874 -187556284 + MER4B LTR ERV1 20 207 -403 1953 127 17 0 chr3 30480879 30481171 -187555987 + AluSx SINE Alu 1 297 -15 1908 179 16 25 chr3 30481368 30481736 -187555422 + MLT1A1 LTR MaLR 1 365 0 2329 111 0 6 chr3 30483869 30484184 -187552974 - AluSq SINE Alu 0 313 1 596 284 74 8 chr3 30484207 30484450 -187552708 + MIR SINE MIR 3 259 -3 283 298 304 11 chr3 30486166 30486347 -187550811 + L3 LINE CR1 1331 1564 -13 256 240 263 6 chr3 30487105 30487280 -187549878 + MER112 DNA MER1_type 1 220 -40 1856 130 63 3 chr3 30488332 30488616 -187548542 - AluSx SINE Alu -11 301 1 182 305 28 78 chr3 30488616 30488752 -187548406 - MIR SINE MIR -82 180 52 236 322 80 2 chr3 30488834 30489016 -187548142 - MIR SINE MIR -15 247 15 21 36 0 0 chr3 30489091 30489119 -187548039 + AT_rich Low_complexity Low_complexity 1 28 0 217 360 106 25 chr3 30489596 30489757 -187547401 - MIR3 SINE MIR -2 206 33 338 289 141 8 chr3 30490027 30490155 -187547003 + L2 LINE L2 3125 3269 -3 4703 201 7 5 chr3 30490242 30491318 -187545840 + L1 LINE L1 4013 5090 -1056 781 276 146 18 chr3 30491448 30492052 -187545106 - L2 LINE L2 -51 3262 2579 284 249 55 152 chr3 30492357 30492522 -187544636 - MIR3 SINE MIR -8 200 52 512 241 26 43 chr3 30492645 30492784 -187544374 + MIR SINE MIR 54 190 -61 407 254 55 113 chr3 30492836 30493112 -187544046 + MLT1I LTR MaLR 82 319 -90 2250 99 0 3 chr3 30493112 30493414 -187543744 - AluSg SINE Alu -9 301 1 407 254 55 113 chr3 30493414 30493499 -187543659 + MLT1I LTR MaLR 319 407 -2 224 75 0 25 chr3 30494215 30494255 -187542903 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 233 193 0 35 chr3 30494958 30495015 -187542143 - Charlie1 DNA MER1_type -4 2757 2703 13735 121 111 12 chr3 30495025 30496856 -187540302 + L1PBa LINE L1 4 2222 -4640 2240 151 28 8 chr3 30496856 30497213 -187539945 - THE1B LTR MaLR 0 364 1 13735 121 111 12 chr3 30497213 30497974 -187539184 + L1PBa LINE L1 2222 2907 -3955 634 235 105 6 chr3 30498623 30498785 -187538373 - MER20 DNA MER1_type -4 215 38 842 178 29 7 chr3 30498901 30499092 -187538066 + MLT1D LTR MaLR 1 168 -337 480 223 67 76 chr3 30499136 30499360 -187537798 - L2 LINE L2 -65 3248 3027 465 242 159 19 chr3 30500797 30500884 -187536274 + MER5A DNA MER1_type 10 83 -106 2234 162 44 12 chr3 30500884 30501297 -187535861 - MSTB LTR MaLR 0 426 1 465 242 159 19 chr3 30501297 30501366 -187535792 + MER5A DNA MER1_type 83 188 -1 207 0 0 0 chr3 30502620 30502643 -187534515 + (CA)n Simple_repeat Simple_repeat 2 24 0 236 343 21 0 chr3 30502713 30502853 -187534305 + LTR16A1 LTR ERVL 305 447 -10 276 250 40 10 chr3 30502874 30502974 -187534184 + MER20 DNA MER1_type 100 202 -17 794 310 73 64 chr3 30503080 30503615 -187533543 - L2 LINE L2 -1215 2099 1560 1307 281 19 16 chr3 30503962 30504392 -187532766 + LTR16B LTR ERVL 34 464 0 266 260 32 8 chr3 30505954 30506077 -187531081 + L1MC4a LINE L1 4479 4604 -1542 332 337 81 50 chr3 30506107 30506238 -187530920 + L1MC4a LINE L1 4629 4754 -1392 1859 147 0 7 chr3 30506238 30506523 -187530635 + AluJb SINE Alu 1 283 -29 332 337 81 50 chr3 30506523 30506809 -187530349 + L1MC4a LINE L1 4754 5059 -1087 884 278 120 28 chr3 30507012 30507472 -187529686 - LTR33 LTR ERVL -8 513 12 188 196 0 36 chr3 30507679 30507735 -187529423 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 347 303 75 53 chr3 30507841 30507992 -187529166 + L1MC4a LINE L1 5733 5892 -1916 414 0 0 0 chr3 30507992 30508038 -187529120 + (CA)n Simple_repeat Simple_repeat 2 47 0 347 303 75 53 chr3 30508038 30508114 -187529044 + L1MC4a LINE L1 5892 5965 -1843 260 216 88 81 chr3 30508338 30508486 -187528672 + L1ME LINE L1 4487 4635 -1511 21 0 0 0 chr3 30508709 30508730 -187528428 + AT_rich Low_complexity Low_complexity 1 21 0 1986 135 0 0 chr3 30508795 30509083 -187528075 + AluJb SINE Alu 22 309 -3 883 216 89 48 chr3 30509111 30509485 -187527673 - L1ME3A LINE L1 0 6170 5778 1556 202 40 8 chr3 30509485 30509837 -187527321 + MLT1A1 LTR MaLR 3 365 0 883 216 89 48 chr3 30509837 30509855 -187527303 - L1ME3A LINE L1 -392 5778 5762 675 255 58 0 chr3 30509933 30510121 -187527037 + L1ME LINE L1 5511 5709 -461 9913 39 1 2 chr3 30511269 30513163 -187523995 + L1PA5 LINE L1 4138 6028 -126 451 365 18 9 chr3 30513471 30513693 -187523465 + MIR SINE MIR 12 235 -27 192 256 0 0 chr3 30514796 30514839 -187522319 + MIR SINE MIR 50 92 -170 558 317 13 35 chr3 30514854 30515084 -187522074 - MIR SINE MIR 0 262 38 6652 173 22 5 chr3 30515459 30517439 -187519719 + L1P5 LINE L1 3784 5782 -369 206 137 59 0 chr3 30517447 30517498 -187519660 + (TA)n Simple_repeat Simple_repeat 2 55 0 317 168 15 36 chr3 30517546 30517683 -187519475 + (TA)n Simple_repeat Simple_repeat 1 134 0 1436 216 9 15 chr3 30517885 30518218 -187518940 - MLT1A1 LTR MaLR 0 365 35 276 257 83 14 chr3 30518364 30518508 -187518650 - L1ME4a LINE L1 -118 6003 5850 283 262 56 24 chr3 30518612 30518738 -187518420 - LTR67 LTR ERVL 0 557 428 370 302 63 13 chr3 30519924 30520083 -187517075 - MIR SINE MIR -55 207 41 2185 139 5 1 chr3 30520464 30520999 -187516159 + L1PA13 LINE L1 1942 2488 -4309 2270 70 17 23 chr3 30520999 30521300 -187515858 - AluSx SINE Alu -13 299 1 3734 188 36 57 chr3 30522032 30523021 -187514137 + LTR5 LTR ERVK 1 969 0 2254 72 0 46 chr3 30523238 30523544 -187513614 - AluY SINE Alu -19 292 1 334 269 155 72 chr3 30523598 30523862 -187513296 + L2 LINE L2 3027 3312 -1 232 299 126 0 chr3 30525723 30525810 -187511348 + MIR SINE MIR 84 181 -81 12888 94 22 18 chr3 30526500 30528530 -187508628 - L1P LINE L1 -3565 2581 544 499 216 90 0 chr3 30528651 30528762 -187508396 - MER96 DNA MER1_type? -54 121 1 226 238 0 0 chr3 30529343 30529385 -187507773 - MIR SINE MIR -98 164 123 658 219 53 11 chr3 30529446 30529633 -187507525 + LTR41 LTR ERVL 1 195 -578 344 145 40 105 chr3 30530176 30530300 -187506858 + LTR41 LTR ERVL 651 766 -7 2410 110 3 16 chr3 30530417 30530791 -187506367 - L1PB1 LINE L1 0 6151 5783 311 283 0 22 chr3 30530796 30530888 -187506270 + L1MC4 LINE L1 6615 6704 -1338 * 334 264 23 0 chr3 30530809 30530896 -187506262 - L1MC4 LINE L1 -1339 6703 6615 216 180 0 60 chr3 30530897 30530997 -187506161 + (TA)n Simple_repeat Simple_repeat 2 95 0 431 251 66 113 chr3 30531149 30531484 -187505674 - MLT1J1 LTR MaLR -127 319 1 1351 184 27 51 chr3 30532428 30532760 -187504398 - MER33 DNA MER1_type 0 324 1 25 0 0 0 chr3 30533680 30533705 -187503453 + AT_rich Low_complexity Low_complexity 1 25 0 353 224 0 24 chr3 30533904 30533989 -187503169 - MIR SINE MIR 0 262 180 829 213 132 30 chr3 30535242 30535439 -187501719 - MER20 DNA MER1_type 0 219 3 694 214 92 29 chr3 30535616 30535822 -187501336 + L1ME3 LINE L1 5943 6161 -1 983 348 117 16 chr3 30536839 30537483 -187499675 - L3 LINE CR1 -583 994 286 1986 189 37 39 chr3 30537509 30537995 -187499163 - L1ME1 LINE L1 -38 6128 5644 533 265 42 24 chr3 30538269 30538435 -187498723 - MIR SINE MIR -15 247 79 292 353 0 40 chr3 30539531 30539704 -187497454 + C-rich Low_complexity Low_complexity 1 166 0 3179 197 44 21 chr3 30540926 30541623 -187495535 + L1PA12 LINE L1 984 2517 -5067 14195 107 17 5 chr3 30541860 30544039 -187493119 - L1P LINE L1 -1562 4584 2379 1925 114 19 45 chr3 30544535 30544843 -187492315 - AluSx SINE Alu -12 300 1 21 82 0 0 chr3 30545215 30545264 -187491894 + AT_rich Low_complexity Low_complexity 1 49 0 429 209 34 104 chr3 30545558 30545896 -187491262 + MLT1H LTR MaLR 90 549 0 2443 53 3 13 chr3 30546069 30546372 -187490786 - AluY SINE Alu -9 302 3 194 237 40 40 chr3 30546894 30546970 -187490188 - MIR SINE MIR -58 204 129 497 319 156 21 chr3 30547127 30547562 -187489596 - MLT1L LTR MaLR -10 605 112 449 209 71 93 chr3 30547923 30548121 -187489037 - L1MC4a LINE L1 -60 7748 6090 319 259 51 57 chr3 30548131 30548289 -187488869 - L1ME4a LINE L1 -176 5945 5789 456 329 69 52 chr3 30548301 30548705 -187488453 - L1ME4a LINE L1 -2143 5665 5255 192 152 0 0 chr3 30549104 30549137 -187488021 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 238 346 96 0 chr3 30549152 30549256 -187487902 - L2 LINE L2 0 3313 3200 754 270 25 5 chr3 30549350 30549546 -187487612 + L2 LINE L2 2541 2740 -574 633 280 60 40 chr3 30549651 30549901 -187487257 - MER93a LTR ERV1 -56 346 92 245 289 72 62 chr3 30550053 30550150 -187487008 - L2 LINE L2 -36 3236 3139 406 238 0 12 chr3 30550690 30550774 -187486384 - MIR SINE MIR -171 91 9 239 291 8 43 chr3 30550776 30550893 -187486265 - HAL1 LINE L1 -941 1566 1454 214 128 0 51 chr3 30550893 30550932 -187486226 + (TTCCC)n Simple_repeat Simple_repeat 5 41 0 989 233 40 24 chr3 30550942 30551191 -187485967 - MLT1F LTR MaLR -289 253 1 207 0 0 0 chr3 30551439 30551462 -187485696 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 946 275 25 11 chr3 30551941 30552225 -187484933 - MLT1H LTR MaLR -261 288 1 1083 152 69 73 chr3 30552266 30552628 -187484530 + MER31A LTR ERV1 10 483 -2 260 132 0 0 chr3 30553702 30553740 -187483418 - MLT1L LTR MaLR -414 201 164 606 321 11 11 chr3 30554014 30554204 -187482954 + L2 LINE L2 3124 3313 0 6132 153 50 40 chr3 30556063 30557241 -187479917 + L1P LINE L1 11 1200 -4946 340 279 125 0 chr3 30557389 30557493 -187479665 - L3 LINE CR1 -1001 576 460 23 0 0 0 chr3 30558457 30558480 -187478678 + AT_rich Low_complexity Low_complexity 1 23 0 405 0 0 0 chr3 30558539 30558584 -187478574 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1388 175 103 31 chr3 30558634 30558954 -187478204 + MER2 DNA MER2_type 2 344 0 22 0 0 0 chr3 30558967 30558989 -187478169 + AT_rich Low_complexity Low_complexity 1 22 0 5466 219 19 6 chr3 30559284 30560538 -187476620 + L1 LINE L1 2184 3453 -2693 9712 87 43 3 chr3 30560647 30562155 -187475003 + L1P LINE L1 2175 3743 -2403 233 326 47 0 chr3 30562464 30562550 -187474608 - MIR SINE MIR -6 256 167 650 247 52 6 chr3 30564379 30564553 -187472605 - MLT1G LTR MaLR -408 182 1 23 0 0 0 chr3 30564769 30564792 -187472366 + AT_rich Low_complexity Low_complexity 1 23 0 1933 138 0 7 chr3 30564792 30565075 -187472083 - AluSx SINE Alu -31 281 1 324 102 0 0 chr3 30566588 30566637 -187470521 + (CA)n Simple_repeat Simple_repeat 1 49 0 2729 235 59 11 chr3 30567659 30568699 -187468459 - L1MEc LINE L1 -3167 3048 1997 7120 62 14 1 chr3 30568811 30570045 -187467113 - L1PA5 LINE L1 -28 6126 4878 550 186 57 71 chr3 30570867 30571007 -187466151 - L1M3f LINE L1 -4946 382 245 236 406 0 9 chr3 30571433 30571539 -187465619 + MER5A DNA MER1_type 35 139 -50 1985 131 0 13 chr3 30572831 30573129 -187464029 + AluSx SINE Alu 1 294 -18 27 29 0 0 chr3 30573297 30573331 -187463827 + AT_rich Low_complexity Low_complexity 1 34 0 2388 220 31 41 chr3 30573480 30574116 -187463042 - L1ME1 LINE L1 -2 6164 5535 814 286 65 62 chr3 30574116 30574700 -187462458 - PABL_B LTR ERV1 0 667 82 406 248 37 0 chr3 30574845 30574954 -187462204 - L1ME1 LINE L1 -867 5279 5167 380 189 123 0 chr3 30575264 30575386 -187461772 + MLT1B LTR MaLR 249 385 -5 212 267 89 11 chr3 30575573 30575663 -187461495 + MIR SINE MIR 47 143 -119 3526 169 25 53 chr3 30577064 30577838 -187459320 + L1MC1 LINE L1 5566 6317 -16 1792 196 78 89 chr3 30577876 30578426 -187458732 - MLT1E1 LTR MaLR -100 554 11 2270 203 97 23 chr3 30580945 30581463 -187455695 + MER68 LTR ERV1 1 556 -6 310 316 72 62 chr3 30583050 30583357 -187453801 + L1M4 LINE L1 4741 5050 -1096 758 120 0 0 chr3 30583474 30583582 -187453576 + L1MA2 LINE L1 6197 6304 0 2018 126 14 0 chr3 30583747 30584040 -187453118 - AluSc SINE Alu -12 297 1 2145 117 28 3 chr3 30584240 30584565 -187452593 + MLT2A2 LTR ERVL 76 408 -45 360 190 0 0 chr3 30584568 30584647 -187452511 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 314 164 0 0 chr3 30584647 30584702 -187452456 + MLT2A2 LTR ERVL 399 453 0 780 139 7 33 chr3 30584724 30584875 -187452283 - L1MCa LINE L1 -5228 1198 1052 1359 115 24 5 chr3 30584875 30585084 -187452074 - pTR5 LTR ERV1 -2054 384 172 303 174 47 35 chr3 30585087 30585173 -187451985 - LTR30 LTR ERV1 -80 642 556 184 313 16 0 chr3 30585905 30585969 -187451189 + L2 LINE L2 3183 3247 -66 1266 211 24 37 chr3 30586105 30586399 -187450759 + AluJb SINE Alu 2 291 -21 1811 204 26 24 chr3 30587646 30588108 -187449050 + L1ME LINE L1 3474 3936 -2210 300 269 181 20 chr3 30589055 30589269 -187447889 + L1ME LINE L1 5588 5837 -284 5189 118 43 6 chr3 30590678 30591772 -187445386 - L1PA6 LINE L1 -162 5992 4856 10671 71 12 5 chr3 30591966 30593422 -187443736 + L1P LINE L1 1354 2819 -3327 2118 226 88 17 chr3 30593631 30594154 -187443004 + MLT1F1 LTR MaLR 6 565 -2 265 238 20 0 chr3 30594821 30594922 -187442236 + (TA)n Simple_repeat Simple_repeat 2 104 0 853 320 136 18 chr3 30594925 30595431 -187441727 + L3 LINE CR1 682 1247 -330 30 45 0 0 chr3 30595619 30595663 -187441495 + AT_rich Low_complexity Low_complexity 1 44 0 267 325 12 0 chr3 30595766 30595849 -187441309 + L3 LINE CR1 1289 1372 -205 2126 108 33 20 chr3 30595940 30596245 -187440913 + AluSx SINE Alu 1 309 -3 1091 214 0 0 chr3 30597273 30597460 -187439698 - MER5A DNA MER1_type -2 187 1 1786 241 77 20 chr3 30598685 30599292 -187437866 - L1M4 LINE L1 -3176 2970 2329 2213 118 49 29 chr3 30599297 30599644 -187437514 + THE1B LTR MaLR 11 364 0 3505 151 7 126 chr3 30599644 30600682 -187436476 + THE1B-int LTR MaLR 1 914 -666 2608 233 3 9 chr3 30601144 30601720 -187435438 + HERVK13 LTR ERVK 4572 5144 -2972 3541 43 5 0 chr3 30601723 30602138 -187435020 - LTR13 LTR ERVK -528 479 63 560 234 58 13 chr3 30602462 30602616 -187434542 + MIR SINE MIR 102 262 0 1552 220 35 8 chr3 30602798 30603171 -187433987 + MER1A DNA MER1_type 1 383 -146 1121 229 9 0 chr3 30603548 30603771 -187433387 - MLT1A1 LTR MaLR -2 363 139 209 321 92 15 chr3 30603920 30604051 -187433107 + MIR SINE MIR 57 197 -65 225 94 0 0 chr3 30605023 30605055 -187432103 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1063 188 0 21 chr3 30605063 30605255 -187431903 - AluJo SINE Alu -38 274 87 240 143 95 0 chr3 30605272 30605314 -187431844 - L1ME2 LINE L1 -39 6125 6080 248 59 29 0 chr3 30605341 30605375 -187431783 - MER3 DNA MER1_type -160 49 15 507 282 120 38 chr3 30605375 30605819 -187431339 - L1ME3 LINE L1 -143 6019 5534 1635 157 0 4 chr3 30606243 30606492 -187430666 - AluJb SINE Alu -64 248 1 961 215 31 19 chr3 30606496 30606757 -187430401 + MER4-int LTR ERV1 2617 2880 -2056 594 212 52 57 chr3 30606803 30607097 -187430061 + MER4-int LTR ERV1 2552 5003 -1595 23 33 0 0 chr3 30608236 30608266 -187428892 + AT_rich Low_complexity Low_complexity 1 30 0 251 194 65 12 chr3 30608514 30608684 -187428474 + (TA)n Simple_repeat Simple_repeat 2 180 0 1356 68 2 70 chr3 30608830 30609155 -187428003 + L1PA6 LINE L1 5207 5512 -642 2840 91 7 36 chr3 30609419 30609868 -187427290 + L1PA6 LINE L1 5703 6138 -16 22 35 0 0 chr3 30611227 30611256 -187425902 + AT_rich Low_complexity Low_complexity 1 29 0 2334 168 29 5 chr3 30611951 30612368 -187424790 + L1MC1 LINE L1 5888 6314 -19 4814 181 34 20 chr3 30612993 30613983 -187423175 - L1M1 LINE L1 -4065 1263 342 306 0 0 0 chr3 30614429 30614463 -187422695 + (TG)n Simple_repeat Simple_repeat 2 35 0 587 307 83 21 chr3 30614481 30614807 -187422351 - L1MC4a LINE L1 -1934 5874 5529 31 0 0 0 chr3 30615233 30615264 -187421894 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 30615831 30615860 -187421298 + AT_rich Low_complexity Low_complexity 1 29 0 401 236 42 24 chr3 30616134 30616299 -187420859 + L1ME LINE L1 5652 5819 -347 192 77 0 0 chr3 30616801 30616827 -187420331 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 219 282 242 8 chr3 30622069 30622193 -187414965 + L2 LINE L2 2602 2754 -560 574 277 19 42 chr3 30622439 30622652 -187414506 - L1M4 LINE L1 -3549 2597 2390 471 63 0 0 chr3 30623211 30623274 -187413884 + (TA)n Simple_repeat Simple_repeat 1 63 0 582 192 13 53 chr3 30624473 30624624 -187412534 + MER63 DNA MER1_type 1 771 -65 24 67 0 0 chr3 30625414 30625459 -187411699 + AT_rich Low_complexity Low_complexity 1 45 0 1005 209 30 82 chr3 30626635 30626965 -187410193 - MLT1A2 LTR MaLR 0 374 62 271 339 0 35 chr3 30627111 30627226 -187409932 - MER5A DNA MER1_type -58 131 21 467 302 20 35 chr3 30628717 30628919 -187408239 + MLT1J2 LTR MaLR 29 227 -223 34 24 0 0 chr3 30629210 30629251 -187407907 + AT_rich Low_complexity Low_complexity 1 41 0 1434 203 37 7 chr3 30629675 30629975 -187407183 + AluJb SINE Alu 4 312 0 381 165 9 122 chr3 30629984 30630099 -187407059 + Charlie5 DNA MER1_type 2484 2585 -27 630 316 65 11 chr3 30630160 30630438 -187406720 + LTR16C LTR ERVL 107 399 -92 309 276 32 76 chr3 30630740 30630925 -187406233 + Charlie8 DNA MER1_type 89 265 -2152 895 212 33 11 chr3 30631409 30631593 -187405565 - MER5A DNA MER1_type 0 189 2 2142 115 3 0 chr3 30633480 30633775 -187403383 - AluSx SINE Alu -16 296 1 1986 135 20 7 chr3 30633779 30634076 -187403082 - AluSx SINE Alu -11 301 1 2214 86 24 0 chr3 30634905 30635074 -187402084 - AluY SINE Alu -12 299 119 300 27 0 0 chr3 30635074 30635111 -187402047 + (TG)n Simple_repeat Simple_repeat 2 38 0 2214 86 24 0 chr3 30635111 30635233 -187401925 - AluY SINE Alu -192 119 1 496 290 52 26 chr3 30636200 30636355 -187400803 + MIR SINE MIR 35 193 -69 533 309 69 18 chr3 30636600 30636817 -187400341 - MIR SINE MIR -27 235 8 484 339 7 18 chr3 30638109 30638470 -187398688 + C-rich Low_complexity Low_complexity 1 356 0 268 214 69 28 chr3 30639541 30639686 -187397472 + AluJb SINE Alu 8 158 -144 2147 114 0 16 chr3 30639988 30640295 -187396863 + AluSx SINE Alu 1 302 -10 1313 93 88 5 chr3 30641219 30641413 -187395745 - AluSg SINE Alu -88 222 13 2140 112 0 0 chr3 30642846 30643123 -187394035 + AluY SINE Alu 11 287 -24 1829 95 4 8 chr3 30643122 30643374 -187393784 + AluY SINE Alu 50 300 -11 * 423 319 26 30 chr3 30643376 30643646 -187393512 + L1 LINE L1 4432 4700 -1446 259 219 122 12 chr3 30644520 30644602 -187392556 + MLT1H LTR MaLR 23 113 -436 2416 78 0 0 chr3 30644603 30644898 -187392260 - AluSx SINE Alu -17 295 1 1143 221 25 31 chr3 30645562 30645879 -187391279 - L1P LINE L1 -2491 3655 3341 2523 45 0 19 chr3 30646328 30646636 -187390522 - AluY SINE Alu -9 302 1 509 279 42 5 chr3 30646647 30646862 -187390296 - L1MB8 LINE L1 -1 6177 5955 5101 166 12 4 chr3 30647073 30648076 -187389082 - L1P LINE L1 -751 5395 4385 499 139 0 0 chr3 30648233 30648312 -187388846 + L1PA16 LINE L1 6085 6163 -3 2238 242 54 23 chr3 30648480 30649264 -187387894 + L1MDa LINE L1 3 971 -5569 290 274 9 57 chr3 30650344 30650450 -187386708 - MIR3 SINE MIR -18 190 90 665 108 0 54 chr3 30650763 30650874 -187386284 + L1PA3 LINE L1 6039 6143 -12 7058 150 21 11 chr3 30651056 30653395 -187383763 + L1MA3 LINE L1 3937 6296 -9 477 0 0 0 chr3 30653395 30653448 -187383710 + (TA)n Simple_repeat Simple_repeat 2 54 0 309 250 184 20 chr3 30653953 30654105 -187383053 + L1MDa LINE L1 1283 1459 -5081 1236 241 96 42 chr3 30654117 30654280 -187382878 + L1ME3A LINE L1 5651 5804 -366 1976 123 14 0 chr3 30654280 30654557 -187382601 + AluSg SINE Alu 1 281 -29 180 0 0 0 chr3 30654561 30654581 -187382577 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1236 241 96 42 chr3 30654581 30654893 -187382265 + L1ME3A LINE L1 5806 6157 -13 1386 195 6 58 chr3 30655105 30655433 -187381725 + AluJo SINE Alu 1 311 -1 190 398 41 0 chr3 30655787 30655885 -187381273 + L2 LINE L2 3160 3261 -11 298 345 26 9 chr3 30656936 30657049 -187380109 - MIR SINE MIR -62 146 32 2043 205 92 44 chr3 30657447 30657988 -187379170 + MLT1F1 LTR MaLR 1 567 0 243 123 263 0 chr3 30658074 30658131 -187379027 - MER116 DNA Mariner -6 74 3 8118 201 8 39 chr3 30658134 30660744 -187376414 - L1PA14 LINE L1 -4 6157 3603 243 0 0 0 chr3 30660744 30660771 -187376387 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 40691 32 23 1 chr3 30660772 30666782 -187370376 - L1PA2 LINE L1 -4 6151 4 193 380 19 19 chr3 30669398 30669506 -187367652 - L2 LINE L2 -16 3256 3149 609 272 110 11 chr3 30669535 30669726 -187367432 + MIR SINE MIR 26 235 -27 686 316 25 24 chr3 30670277 30670728 -187366430 - L1ME4a LINE L1 -254 5867 5409 448 317 35 22 chr3 30671556 30671783 -187365375 + MER90 LTR ERV1 320 549 -26 5237 237 22 156 chr3 30671929 30674192 -187362966 - L1M2 LINE L1 -4883 2326 1 3465 59 0 2 chr3 30674725 30675164 -187361994 + L1PA5 LINE L1 5717 6154 0 315 0 0 0 chr3 30675525 30675560 -187361598 + (TG)n Simple_repeat Simple_repeat 1 35 0 887 222 168 61 chr3 30675594 30676035 -187361123 + MER41B LTR ERV1 114 601 -34 933 239 59 42 chr3 30676069 30676475 -187360683 + Charlie4a DNA MER1_type 65 477 -31 183 220 0 0 chr3 30676484 30676534 -187360624 + (CA)n Simple_repeat Simple_repeat 2 51 0 183 353 84 0 chr3 30677204 30677323 -187359835 + MIR SINE MIR 29 157 -105 1399 182 14 62 chr3 30677343 30677676 -187359482 + L1MA4 LINE L1 1959 2274 -4575 2322 86 0 0 chr3 30677676 30677968 -187359190 + AluY SINE Alu 1 292 -19 1399 182 14 62 chr3 30677968 30678002 -187359156 + L1MA4 LINE L1 2274 2308 -4541 1854 62 0 23 chr3 30678002 30678258 -187358900 + MER41A LTR ERV1 218 467 -87 12073 190 36 30 chr3 30678263 30681238 -187355920 + L1MA4 LINE L1 2309 5314 -1534 2031 144 3 19 chr3 30681238 30681550 -187355608 + AluSq SINE Alu 1 307 -6 12073 190 36 30 chr3 30681550 30682212 -187354946 + L1MA4 LINE L1 5314 5970 -878 1776 128 22 22 chr3 30682212 30682681 -187354477 + MER4A LTR ERV1 55 660 -4 207 0 0 0 chr3 30682710 30682733 -187354425 + (A)n Simple_repeat Simple_repeat 1 23 0 1819 135 0 6 chr3 30682737 30683056 -187354102 + L1MA4 LINE L1 5996 6312 -693 1040 198 34 0 chr3 30683056 30683285 -187353873 + L1MA4 LINE L1 6752 6996 -6 211 194 0 0 chr3 30683609 30683645 -187353513 + CT-rich Low_complexity Low_complexity 2 37 0 446 333 82 11 chr3 30684323 30684506 -187352652 + L1MC/D LINE L1 5 200 -5919 1384 288 145 10 chr3 30684710 30685482 -187351676 - L1MC4a LINE L1 -1636 6172 5297 367 318 48 66 chr3 30685493 30685782 -187351376 - L1MC4a LINE L1 -960 5186 4903 328 322 35 28 chr3 30685802 30685945 -187351213 + L1MC/D LINE L1 309 452 -5667 2377 55 6 13 chr3 30686006 30686317 -187350841 - AluY SINE Alu -2 309 1 421 315 125 29 chr3 30686327 30686670 -187350488 + L1MC/D LINE L1 2771 3146 -2983 297 300 124 21 chr3 30686747 30686980 -187350178 + L1MC/D LINE L1 5541 5797 -1994 2283 102 0 0 chr3 30687001 30687305 -187349853 + AluY SINE Alu 1 304 -7 213 218 12 54 chr3 30687547 30687659 -187349499 + A-rich Low_complexity Low_complexity 1 107 0 396 263 77 62 chr3 30689332 30689541 -187347617 - MIR SINE MIR -49 213 2 23 33 0 0 chr3 30690632 30690662 -187346496 + AT_rich Low_complexity Low_complexity 1 30 0 866 236 37 23 chr3 30693810 30694026 -187343132 + MER20 DNA MER1_type 1 219 0 449 235 102 102 chr3 30694133 30694465 -187342693 + MLT1I LTR MaLR 71 402 -7 230 114 0 23 chr3 30694548 30694592 -187342566 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 291 28 0 0 chr3 30694594 30694630 -187342528 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr3 30694819 30694843 -187342315 + AT_rich Low_complexity Low_complexity 1 24 0 523 305 129 28 chr3 30694843 30695269 -187341889 - L1MDa LINE L1 -3634 2495 2068 356 294 169 13 chr3 30695560 30695833 -187341325 - L1MDa LINE L1 -4594 1535 1290 750 345 88 39 chr3 30695942 30696685 -187340473 - L1MDa LINE L1 -4959 1160 382 342 0 0 0 chr3 30696688 30696726 -187340432 + (T)n Simple_repeat Simple_repeat 1 38 0 482 211 32 49 chr3 30697399 30697522 -187339636 - MER45A DNA AcHobo 0 178 58 37 76 0 0 chr3 30697670 30697749 -187339409 + AT_rich Low_complexity Low_complexity 1 79 0 4293 146 44 5 chr3 30698141 30698921 -187338237 + L1PB4 LINE L1 5347 6156 0 453 291 209 11 chr3 30699127 30699309 -187337849 + MIR SINE MIR 36 253 -9 703 239 11 6 chr3 30699421 30699597 -187337561 - MER5B DNA MER1_type -1 177 1 439 308 69 65 chr3 30699683 30699930 -187337228 + MIR SINE MIR 14 261 -1 303 128 21 0 chr3 30701541 30701588 -187335570 - THE1C LTR MaLR 0 428 381 * 2762 78 28 74 chr3 30701587 30702046 -187335112 + MLT2A1 LTR ERVL 7 444 0 19225 71 15 53 chr3 30702046 30704797 -187332361 + HERVL-A1 LTR ERVL 1 2647 -3007 20497 77 25 13 chr3 30704797 30706577 -187330581 + HERVL-A1 LTR ERVL 2894 4751 -903 182 147 0 29 chr3 30706577 30706611 -187330547 + L2 LINE L2 1661 1693 -1621 20497 77 25 13 chr3 30706611 30707526 -187329632 + HERVL-A1 LTR ERVL 4751 5654 0 2690 96 61 28 chr3 30707526 30707914 -187329244 + MLT2A1 LTR ERVL 1 406 -38 450 0 0 0 chr3 30707914 30707964 -187329194 + (TA)n Simple_repeat Simple_repeat 2 51 0 2690 96 61 28 chr3 30707964 30708003 -187329155 + MLT2A1 LTR ERVL 406 442 -2 830 184 84 145 chr3 30708004 30708352 -187328806 - THE1C LTR MaLR -67 308 1 9210 137 15 37 chr3 30708352 30709933 -187327225 - THE1C-int LTR MaLR 0 1580 35 1283 183 32 39 chr3 30709939 30710223 -187326935 - THE1C LTR MaLR -93 282 1 706 296 23 8 chr3 30710420 30710677 -187326481 - MIR SINE MIR 0 262 2 1817 153 0 0 chr3 30710781 30711056 -187326102 + AluSx SINE Alu 1 275 -37 432 0 0 0 chr3 30711064 30711112 -187326046 + (TAA)n Simple_repeat Simple_repeat 2 49 0 397 272 19 10 chr3 30711549 30711652 -187325506 - MER81 DNA DNA 0 114 11 353 319 0 0 chr3 30711648 30711742 -187325416 - MER81 DNA DNA -20 94 1 * 1261 223 63 36 chr3 30711769 30712133 -187325025 + MLT1A2 LTR MaLR 1 374 0 7442 33 10 0 chr3 30714385 30715522 -187321636 - L1PA4 LINE L1 0 6155 5014 2182 27 0 0 chr3 30715522 30715781 -187321377 + L1PA4 LINE L1 4762 5020 -1126 479 309 144 10 chr3 30715990 30716191 -187320967 + MIR SINE MIR 31 258 -4 45 45 0 0 chr3 30716549 30716615 -187320543 + AT_rich Low_complexity Low_complexity 1 66 0 191 401 36 6 chr3 30717009 30717176 -187319982 + L2 LINE L2 2696 2867 -447 253 159 101 14 chr3 30717236 30717305 -187319853 + MER116 DNA Mariner 6 80 0 537 295 41 58 chr3 30717470 30717956 -187319202 + LTR33 LTR ERVL 5 521 0 485 298 45 11 chr3 30717959 30718137 -187319021 - MIR SINE MIR -48 214 31 264 323 112 12 chr3 30718355 30718516 -187318642 + L3 LINE CR1 645 821 -756 358 125 0 42 chr3 30718586 30718658 -187318500 - L1MB7 LINE L1 -19 6165 6097 234 129 57 100 chr3 30718738 30718808 -187318350 - MLT1K LTR MaLR -138 450 384 328 327 101 6 chr3 30718893 30719061 -187318097 - MLT1K LTR MaLR -318 270 87 771 353 52 29 chr3 30719155 30719640 -187317518 + L3 LINE CR1 836 1331 -246 493 284 132 15 chr3 30719821 30720025 -187317133 + MIR SINE MIR 35 262 0 378 248 97 35 chr3 30721239 30721352 -187315806 - L2 LINE L2 -12 3301 3182 561 296 99 32 chr3 30721355 30721669 -187315489 + MLT1E LTR MaLR 4 338 -255 325 297 68 61 chr3 30721673 30721821 -187315337 - L2 LINE L2 -1468 1846 1698 189 74 0 0 chr3 30722156 30722183 -187314975 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 450 319 117 8 chr3 30722284 30722550 -187314608 - L2 LINE L2 -1667 1647 1353 466 127 0 0 chr3 30722671 30722742 -187314416 + AluSp/q SINE Alu 226 296 -17 300 145 16 0 chr3 30722742 30722804 -187314354 - L1 LINE L1 -1817 4329 4267 766 181 77 16 chr3 30722835 30723017 -187314141 - L1 LINE L1 -1010 5136 4944 7130 161 66 33 chr3 30724821 30726730 -187310428 - L1MA8 LINE L1 -2 6289 4269 2044 120 3 0 chr3 30726730 30727081 -187310077 + AluSq SINE Alu 1 352 0 7130 161 66 33 chr3 30727081 30727821 -187309337 - L1MA8 LINE L1 -2022 4269 3554 1373 226 14 0 chr3 30727824 30728099 -187309059 + AluJo SINE Alu 1 279 -33 231 61 0 0 chr3 30728099 30728132 -187309026 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 797 179 62 6 chr3 30728172 30728351 -187308807 - L1MA8 LINE L1 -2585 3561 3373 23 33 0 0 chr3 30728500 30728530 -187308628 + AT_rich Low_complexity Low_complexity 1 30 0 335 271 31 39 chr3 30728983 30729112 -187308046 - MLT1H LTR MaLR -16 533 406 588 285 36 51 chr3 30729418 30729671 -187307487 + MIR SINE MIR 14 262 0 2090 126 0 13 chr3 30729806 30730107 -187307051 - AluSx SINE Alu -15 297 1 216 97 0 0 chr3 30730288 30730319 -187306839 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chr3 30730905 30730928 -187306230 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 30730968 30730990 -187306168 + AT_rich Low_complexity Low_complexity 1 22 0 283 229 29 14 chr3 30731608 30731678 -187305480 - MER5B DNA MER1_type -104 74 4 275 296 0 0 chr3 30731755 30731843 -187305315 - Charlie2 DNA MER1_type -2599 263 176 282 238 79 30 chr3 30731869 30731970 -187305188 - Charlie2 DNA MER1_type -2752 110 5 411 179 107 54 chr3 30731972 30732052 -187305106 + L2 LINE L2 3196 3285 -28 2440 228 16 44 chr3 30732052 30732622 -187304536 + MLT2B3 LTR ERVL 1 554 0 411 179 107 54 chr3 30732622 30732653 -187304505 + L2 LINE L2 3285 3313 0 21 57 0 0 chr3 30732987 30733022 -187304136 + AT_rich Low_complexity Low_complexity 1 35 0 26 74 0 0 chr3 30733195 30733249 -187303909 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr3 30733405 30733428 -187303730 + (TTAAA)n Simple_repeat Simple_repeat 4 26 0 507 324 109 19 chr3 30733608 30733920 -187303238 + L2 LINE L2 2521 2860 -454 753 234 16 113 chr3 30733960 30734280 -187302878 + L2 LINE L2 3021 3309 -4 1565 175 3 62 chr3 30734335 30734644 -187302514 - AluJb SINE Alu -21 291 1 1711 261 109 4 chr3 30734871 30735384 -187301774 + MLT1F1 LTR MaLR 1 567 0 378 324 43 7 chr3 30735435 30735574 -187301584 + MIR SINE MIR 82 225 -37 1496 273 33 9 chr3 30735901 30736329 -187300829 + LTR16A LTR ERVL 13 450 0 991 222 19 0 chr3 30736337 30736544 -187300614 - ERVL LTR ERVL -4789 975 765 2533 177 14 14 chr3 30736711 30737202 -187299956 + L1MA7 LINE L1 5629 6119 -172 358 339 40 24 chr3 30737267 30737391 -187299767 + MIR SINE MIR 1 126 -136 195 42 0 0 chr3 30738594 30738618 -187298540 + (TG)n Simple_repeat Simple_repeat 2 25 0 414 39 0 0 chr3 30738750 30738802 -187298356 + (TG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr3 30738833 30738854 -187298304 + (TG)n Simple_repeat Simple_repeat 2 22 0 2000 110 36 0 chr3 30740014 30740295 -187296863 + AluSc SINE Alu 1 291 -18 369 185 0 65 chr3 30740302 30740394 -187296764 - MER3 DNA MER1_type 0 209 124 431 260 204 10 chr3 30740828 30741024 -187296134 + MLT2E LTR ERVL 393 626 -2 326 322 90 61 chr3 30741168 30741678 -187295480 - MLT1L LTR MaLR -87 528 4 374 267 34 23 chr3 30744901 30745077 -187292081 + GA-rich Low_complexity Low_complexity 3 180 0 223 356 52 22 chr3 30745841 30745976 -187291182 + MIR SINE MIR 50 188 -74 259 307 79 26 chr3 30746787 30746901 -187290257 + L2 LINE L2 1181 1300 -2014 183 179 232 36 chr3 30747161 30747217 -187289941 + MER5A DNA MER1_type 1 67 -122 183 206 0 0 chr3 30747233 30747267 -187289891 + MER5A DNA MER1_type 153 186 -3 410 309 34 23 chr3 30747281 30747456 -187289702 - MER5B DNA MER1_type 0 178 2 1183 330 119 28 chr3 30747611 30748980 -187288178 + L2 LINE L2 1805 3306 -7 26 0 0 0 chr3 30749362 30749388 -187287770 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr3 30751642 30751670 -187285488 + AT_rich Low_complexity Low_complexity 1 28 0 225 226 0 0 chr3 30752163 30752216 -187284942 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 35 24 0 0 chr3 30752848 30752890 -187284268 + AT_rich Low_complexity Low_complexity 1 42 0 1689 204 0 18 chr3 30752934 30753272 -187283886 + MLT1A1 LTR MaLR 2 333 -32 254 200 15 15 chr3 30753780 30753845 -187283313 + MLT1J2 LTR MaLR 15 79 -371 404 244 52 17 chr3 30753970 30754085 -187283073 + MER58B DNA MER1_type 222 340 -1 24 67 0 0 chr3 30754262 30754307 -187282851 + AT_rich Low_complexity Low_complexity 1 45 0 32651 85 12 9 chr3 30754354 30758906 -187278252 + L1PA5 LINE L1 11 4576 -1570 3561 57 11 0 chr3 30758907 30759361 -187277797 + L1PA5 LINE L1 5696 6154 0 1056 274 94 39 chr3 30759538 30760005 -187277153 + MLT1J LTR MaLR 3 495 -16 447 232 62 26 chr3 30761638 30761830 -187275328 + LTR41 LTR ERVL 101 353 -420 300 197 61 0 chr3 30761987 30762053 -187275105 + LTR41 LTR ERVL 601 670 -103 2038 125 0 13 chr3 30762105 30762408 -187274750 - AluSc SINE Alu -10 299 1 232 222 16 16 chr3 30762421 30762484 -187274674 + LTR41 LTR ERVL 703 765 -8 399 297 61 47 chr3 30763181 30763477 -187273681 + ERVL LTR ERVL 904 1203 -4561 597 314 96 28 chr3 30763650 30764004 -187273154 + ERVL LTR ERVL 1453 1830 -3824 679 285 86 8 chr3 30764397 30764653 -187272505 + LTR41 LTR ERVL 1 276 -497 407 226 95 78 chr3 30764779 30765022 -187272136 + LTR41 LTR ERVL 496 742 -31 22 56 0 0 chr3 30765210 30765246 -187271912 + AT_rich Low_complexity Low_complexity 1 36 0 41 82 0 0 chr3 30765610 30765707 -187271451 + AT_rich Low_complexity Low_complexity 1 97 0 335 181 9 69 chr3 30765968 30766084 -187271074 - HAL1b LINE L1 -535 813 705 326 324 128 0 chr3 30766093 30766272 -187270886 - L1ME3A LINE L1 -8 6162 5961 309 232 53 0 chr3 30766312 30766407 -187270751 - HAL1b LINE L1 -713 635 536 404 208 135 48 chr3 30766450 30766657 -187270501 - HAL1b LINE L1 -693 655 431 221 128 43 0 chr3 30766657 30766704 -187270454 + (TA)n Simple_repeat Simple_repeat 1 49 0 490 342 23 26 chr3 30766814 30767121 -187270037 - LTR16B LTR ERVL -122 342 37 323 298 58 42 chr3 30767176 30767203 -187269955 - HAL1b LINE L1 -969 379 354 1221 192 38 92 chr3 30767203 30767520 -187269638 - AluJo SINE Alu -2 300 1 323 298 58 42 chr3 30767520 30767683 -187269475 - HAL1b LINE L1 -994 354 186 35 54 0 0 chr3 30768076 30768132 -187269026 + AT_rich Low_complexity Low_complexity 1 56 0 924 162 60 0 chr3 30768451 30768618 -187268540 + L1PA16 LINE L1 5981 6157 -9 32 43 0 0 chr3 30768619 30768665 -187268493 + AT_rich Low_complexity Low_complexity 1 46 0 736 284 206 36 chr3 30769082 30769556 -187267602 + MLT1G1 LTR MaLR 1 592 -3 302 317 0 9 chr3 30769559 30769682 -187267476 + MLT1G1-int LTR MaLR 1 102 -1269 240 320 39 0 chr3 30769828 30769906 -187267252 + MLT1G1-int LTR MaLR 438 518 -853 790 285 75 60 chr3 30770942 30771571 -187265587 + L1ME4a LINE L1 5327 5964 -157 7500 24 1 1 chr3 30772248 30773183 -187263975 + L1PA3 LINE L1 5269 6203 0 359 319 52 37 chr3 30774154 30774289 -187262869 - MIR3 SINE MIR -70 138 2 585 329 70 4 chr3 30774499 30774742 -187262416 - MIR SINE MIR 0 262 4 26 0 0 0 chr3 30775258 30775284 -187261874 + AT_rich Low_complexity Low_complexity 1 26 0 367 322 66 25 chr3 30775521 30775642 -187261516 + L2 LINE L2 3133 3258 -14 25 0 0 0 chr3 30776202 30776227 -187260931 + AT_rich Low_complexity Low_complexity 1 25 0 275 125 107 0 chr3 30777637 30777693 -187259465 - L1MC4 LINE L1 -1366 6676 6615 183 156 0 0 chr3 30777694 30777726 -187259432 + (CATA)n Simple_repeat Simple_repeat 2 33 0 2131 194 78 13 chr3 30777727 30778175 -187258983 - MLT2B1 LTR ERVL -41 479 3 264 376 0 10 chr3 30778381 30778482 -187258676 - MER5B DNA MER1_type -78 100 1 277 305 53 0 chr3 30778546 30778641 -187258517 - MIR SINE MIR -48 214 115 2353 100 6 0 chr3 30779322 30779633 -187257525 - AluSp SINE Alu 0 313 1 944 232 67 14 chr3 30780147 30780475 -187256683 + MSTD LTR MaLR 5 396 0 434 316 33 52 chr3 30780883 30781041 -187256117 + MIR SINE MIR 52 207 -55 2084 141 3 0 chr3 30781041 30781338 -187255820 + AluSx SINE Alu 1 298 -14 434 316 33 52 chr3 30781338 30781391 -187255767 + MIR SINE MIR 207 259 -3 856 52 0 9 chr3 30781910 30782025 -187255133 - L1P LINE L1 -3602 2544 2431 7504 26 5 0 chr3 30782025 30783101 -187254057 + L1PA4 LINE L1 5078 6144 -11 366 235 139 53 chr3 30783234 30783421 -187253737 + L2 LINE L2 2272 2474 -840 369 169 60 24 chr3 30783426 30783509 -187253649 - L2 LINE L2 -47 3266 3181 2167 102 0 40 chr3 30783701 30784026 -187253132 - AluSx SINE Alu 0 312 1 1947 123 11 3 chr3 30784697 30784981 -187252177 - AluSx SINE Alu -26 286 1 712 196 21 28 chr3 30784981 30785124 -187252034 - AluJo SINE Alu -170 142 1 1189 165 5 14 chr3 30785143 30785361 -187251797 - AluJb SINE Alu -18 294 79 357 239 125 11 chr3 30785917 30786093 -187251065 + L1M4 LINE L1 4951 5146 -1000 2201 94 0 0 chr3 30786181 30786456 -187250702 + AluSx SINE Alu 21 295 -17 2250 110 3 3 chr3 30786470 30786779 -187250379 + AluSx SINE Alu 1 309 -3 1802 175 7 0 chr3 30786849 30787140 -187250018 + AluJb SINE Alu 1 293 -19 426 264 88 55 chr3 30787955 30788228 -187248930 - L1MEc LINE L1 -4179 2217 1936 2162 101 27 3 chr3 30788230 30788526 -187248632 - AluSc SINE Alu -6 303 1 1216 117 0 0 chr3 30788528 30788699 -187248459 - AluSg/x SINE Alu -5 305 135 1478 112 0 0 chr3 30788885 30789082 -187248076 - AluSg/x SINE Alu -23 287 91 183 80 0 0 chr3 30789082 30789107 -187248051 + (A)n Simple_repeat Simple_repeat 1 25 0 2093 123 0 13 chr3 30789934 30790244 -187246914 + AluSq SINE Alu 1 306 -7 873 298 84 29 chr3 30791573 30791764 -187245394 + MARNA DNA Mariner 14 193 -393 722 214 0 0 chr3 30791764 30791895 -187245263 - FLAM_A SINE Alu -2 131 1 873 298 84 29 chr3 30791895 30792226 -187244932 + MARNA DNA Mariner 193 565 -21 257 303 66 29 chr3 30792660 30792779 -187244379 - MIR SINE MIR -78 130 9 2376 89 3 0 chr3 30794334 30794636 -187242522 + AluSx SINE Alu 1 303 -9 11862 13 1 0 chr3 30795583 30797454 -187239704 - L1HS LINE L1 -277 5878 4006 344 191 34 62 chr3 30797562 30797740 -187239418 + (GGGTG)n Simple_repeat Simple_repeat 4 176 0 264 30 0 0 chr3 30797971 30798004 -187239154 + (T)n Simple_repeat Simple_repeat 1 33 0 256 222 144 22 chr3 30799787 30799877 -187237281 + MIR3 SINE MIR 55 155 -53 333 155 33 5 chr3 30800556 30800628 -187236530 + AluY SINE Alu 35 95 -206 1138 296 77 25 chr3 30801250 30801547 -187235611 - LTR16C LTR ERVL 0 491 168 1244 211 97 57 chr3 30801547 30801898 -187235260 + MLT1A1 LTR MaLR 1 365 0 1138 296 77 25 chr3 30801898 30801992 -187235166 - LTR16C LTR ERVL -323 168 80 23 33 0 0 chr3 30802963 30802993 -187234165 + AT_rich Low_complexity Low_complexity 1 30 0 423 340 96 2 chr3 30803702 30803904 -187233254 - MIR SINE MIR -17 245 23 23 105 0 0 chr3 30804391 30804477 -187232681 + AT_rich Low_complexity Low_complexity 1 86 0 235 315 0 0 chr3 30805271 30805325 -187231833 - MER91 DNA MER1_type 0 140 87 1005 204 120 63 chr3 30806662 30806946 -187230212 - AluJo SINE Alu -1 301 2 1622 215 54 5 chr3 30806990 30807358 -187229800 - MLT1B LTR MaLR -4 386 1 215 360 33 67 chr3 30807384 30807534 -187229624 + MIR SINE MIR 31 175 -87 25 0 0 0 chr3 30808487 30808512 -187228646 + AT_rich Low_complexity Low_complexity 1 25 0 2851 176 62 0 chr3 30808554 30809102 -187228056 + LTR38B LTR ERV1 28 608 -3 880 294 69 62 chr3 30809306 30809942 -187227216 - L2 LINE L2 -22 3291 2657 180 200 0 0 chr3 30809988 30810028 -187227130 + GA-rich Low_complexity Low_complexity 3 42 0 264 122 0 41 chr3 30810139 30810188 -187226970 - L1MA1 LINE L1 0 6305 6257 7445 164 29 25 chr3 30810210 30810391 -187226767 - L1MA3 LINE L1 -23 7701 7522 1987 118 3 10 chr3 30810391 30810680 -187226478 + AluSq SINE Alu 1 287 -26 243 79 0 0 chr3 30810680 30810718 -187226440 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7445 164 29 25 chr3 30810718 30810736 -187226422 - L1MA3 LINE L1 -202 7522 7506 369 0 0 0 chr3 30810736 30810777 -187226381 + (TC)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr3 30810776 30810803 -187226355 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 7445 164 29 25 chr3 30810777 30813085 -187224073 - L1MA3 LINE L1 -218 7506 5208 3304 202 53 20 chr3 30813087 30814165 -187222993 - L1MA3 LINE L1 -3071 4494 3383 2606 179 76 12 chr3 30814460 30815040 -187222118 - L1 LINE L1 -1976 4170 3554 1373 226 14 0 chr3 30815043 30815318 -187221840 + AluJo SINE Alu 1 279 -33 231 61 0 0 chr3 30815318 30815351 -187221807 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 784 184 62 6 chr3 30815391 30815570 -187221588 - L1 LINE L1 -2585 3561 3373 23 33 0 0 chr3 30815719 30815749 -187221409 + AT_rich Low_complexity Low_complexity 1 30 0 18386 41 55 3 chr3 30815822 30818158 -187219000 - L1P LINE L1 -3360 2786 331 * 19095 32 17 0 chr3 30818156 30821189 -187215969 + L1PA5 LINE L1 3064 6154 0 1989 210 91 47 chr3 30821233 30821827 -187215331 + L1MD2 LINE L1 5377 5996 -246 745 244 80 36 chr3 30821860 30822134 -187215024 + L1MD2 LINE L1 6061 6346 -13 268 265 32 28 chr3 30823174 30823283 -187213875 - MIR SINE MIR -66 142 72 441 326 87 9 chr3 30824154 30824384 -187212774 + LTR33 LTR ERVL 192 439 -82 396 0 0 0 chr3 30824471 30824515 -187212643 + (TG)n Simple_repeat Simple_repeat 1 44 0 2037 78 0 7 chr3 30824515 30824785 -187212373 - AluY SINE Alu -33 278 11 1779 162 19 16 chr3 30825703 30826012 -187211146 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr3 30826114 30826135 -187211023 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr3 30826422 30826451 -187210707 + (TG)n Simple_repeat Simple_repeat 2 30 0 286 77 0 0 chr3 30826671 30826710 -187210448 + MADE1 DNA Mariner 42 80 0 200 240 67 53 chr3 30826731 30826806 -187210352 - MIR SINE MIR -140 122 47 199 191 0 149 chr3 30827934 30828028 -187209130 + L2 LINE L2 3149 3228 -85 678 347 92 9 chr3 30828611 30828957 -187208201 + MLT1K LTR MaLR 8 382 -206 297 331 67 61 chr3 30828997 30829221 -187207937 - MIR SINE MIR -24 238 9 461 238 210 0 chr3 30830458 30830601 -187206557 + MER5A DNA MER1_type 10 182 -7 746 220 20 0 chr3 30830842 30830992 -187206166 - MER5A DNA MER1_type 0 189 37 249 170 21 0 chr3 30832929 30832976 -187204182 - MLT2D LTR ERVL 0 414 367 645 219 7 13 chr3 30832980 30833135 -187204023 - MLT2D LTR ERVL -167 247 94 2358 104 0 0 chr3 30833824 30834133 -187203025 - AluSc SINE Alu 0 309 1 2653 161 46 2 chr3 30834442 30834940 -187202218 + L1MC1 LINE L1 5814 6333 0 27 0 0 0 chr3 30835937 30835964 -187201194 + AT_rich Low_complexity Low_complexity 1 27 0 406 302 50 35 chr3 30836040 30836242 -187200916 + MIR SINE MIR 18 222 -40 2931 188 102 14 chr3 30836641 30837280 -187199878 + LTR28 LTR ERV1 1 695 -325 638 301 77 10 chr3 30838849 30839058 -187198100 - MIR SINE MIR -32 230 8 884 209 0 0 chr3 30839404 30839557 -187197601 - AluJb SINE Alu -15 297 145 222 330 22 11 chr3 30839794 30839885 -187197273 - L2 LINE L2 -9 3263 3172 23 0 0 0 chr3 30840316 30840339 -187196819 + AT_rich Low_complexity Low_complexity 1 23 0 2451 65 0 3 chr3 30841203 30841509 -187195649 + AluY SINE Alu 3 307 -4 3201 230 85 10 chr3 30842259 30843086 -187194072 + L1MC3 LINE L1 6890 7778 -7 253 227 0 40 chr3 30843110 30843185 -187193973 - MER50-int LTR ERV1 -6244 961 890 282 29 0 0 chr3 30843624 30843659 -187193499 + (CA)n Simple_repeat Simple_repeat 2 36 0 299 225 36 18 chr3 30845316 30845427 -187191731 + (TA)n Simple_repeat Simple_repeat 2 114 0 36 23 0 0 chr3 30845508 30845551 -187191607 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr3 30846574 30846611 -187190547 + AT_rich Low_complexity Low_complexity 1 37 0 241 331 73 24 chr3 30847045 30847169 -187189989 - L2 LINE L2 -6 3307 3178 10942 37 4 4 chr3 30847190 30849311 -187187847 - L1PA4 LINE L1 -2 6153 4035 8851 44 2 0 chr3 30849311 30850440 -187186718 + L1PA4 LINE L1 2907 4037 -2109 975 261 78 99 chr3 30850896 30851021 -187186137 + MLT1E LTR MaLR 2 128 -465 2247 72 0 7 chr3 30851021 30851326 -187185832 + AluY SINE Alu 1 303 -8 975 261 78 99 chr3 30851326 30851805 -187185353 + MLT1E LTR MaLR 128 593 0 368 289 109 0 chr3 30852043 30852171 -187184987 - MER117 DNA MER1_type -50 147 6 442 292 35 55 chr3 30852617 30852819 -187184339 + L3b LINE CR1 1191 1388 -195 1948 73 0 35 chr3 30852963 30853222 -187183936 - AluSg SINE Alu -20 290 41 332 242 88 0 chr3 30853729 30853839 -187183319 + MIR3 SINE MIR 61 180 -28 1752 122 90 4 chr3 30854150 30854429 -187182729 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr3 30854535 30854564 -187182594 + AT_rich Low_complexity Low_complexity 1 29 0 2150 104 10 0 chr3 30855080 30855368 -187181790 - AluSg SINE Alu -15 295 5 540 173 245 7 chr3 30856526 30856665 -187180493 - MIR SINE MIR -67 195 24 189 74 0 0 chr3 30857084 30857111 -187180047 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 64 0 0 chr3 30857269 30857316 -187179842 + AT_rich Low_complexity Low_complexity 1 47 0 394 162 120 68 chr3 30857486 30857603 -187179555 + MLT1D LTR MaLR 1 123 -382 2336 75 0 3 chr3 30858061 30858356 -187178802 - AluY SINE Alu -17 294 1 630 223 63 23 chr3 30858803 30858978 -187178180 + MER105 DNA DNA 6 187 -17 21 0 0 0 chr3 30860679 30860700 -187176458 + AT_rich Low_complexity Low_complexity 1 21 0 2195 94 14 0 chr3 30860815 30861112 -187176046 + AluSp SINE Alu 1 301 -12 1075 216 34 41 chr3 30861950 30862354 -187174804 + MLT1F LTR MaLR 6 499 -68 277 228 35 0 chr3 30862356 30862413 -187174745 + MER34 LTR ERV1 484 542 0 275 288 115 0 chr3 30863090 30863229 -187173929 + MER103 DNA DNA 12 166 0 342 318 108 58 chr3 30863282 30863682 -187173476 - L1MC/D LINE L1 -2045 5763 5344 27 0 0 0 chr3 30863795 30863822 -187173336 + AT_rich Low_complexity Low_complexity 1 27 0 2089 239 72 61 chr3 30864135 30864943 -187172215 - L1ME1 LINE L1 -26 6376 5560 445 221 54 20 chr3 30865036 30865185 -187171973 - L1ME1 LINE L1 -997 5385 5232 3247 97 11 0 chr3 30865332 30865794 -187171364 + L1PA13 LINE L1 5696 6162 -1 234 277 69 0 chr3 30865862 30865992 -187171166 - L1ME1 LINE L1 -3795 2587 2449 523 310 133 18 chr3 30866027 30866813 -187170345 - L1ME1 LINE L1 -4153 2410 1374 266 311 88 39 chr3 30866788 30867094 -187170064 - L1ME1 LINE L1 -4862 1510 1190 * 182 354 37 0 chr3 30869236 30869318 -187167840 - MIR SINE MIR -89 173 89 514 269 169 15 chr3 30869528 30869729 -187167429 - MIR SINE MIR -19 243 12 8036 79 5 3 chr3 30869830 30870899 -187166259 - MER11C LTR ERVK 0 1071 1 195 42 0 0 chr3 30871406 30871430 -187165728 + (TA)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr3 30871720 30871746 -187165412 + AT_rich Low_complexity Low_complexity 1 26 0 19952 174 42 17 chr3 30872072 30876804 -187160354 + L1MA3 LINE L1 1 4851 -2714 5509 156 43 24 chr3 30876816 30878323 -187158835 + L1MA3 LINE L1 6190 7724 0 29 0 0 0 chr3 30878323 30878352 -187158806 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 30880797 30880826 -187156332 + AT_rich Low_complexity Low_complexity 1 29 0 185 239 0 22 chr3 30880829 30880875 -187156283 + L2 LINE L2 3269 3313 0 25 31 0 0 chr3 30882332 30882364 -187154794 + AT_rich Low_complexity Low_complexity 1 32 0 694 222 69 35 chr3 30882808 30883011 -187154147 - MER58C DNA MER1_type -1 214 5 7409 93 7 19 chr3 30883657 30884727 -187152431 + MER11C LTR ERVK 1 1057 -14 5150 107 7 17 chr3 30884788 30885562 -187151596 + MER11C LTR ERVK 292 1057 -14 21 57 0 0 chr3 30885867 30885902 -187151256 + AT_rich Low_complexity Low_complexity 1 35 0 826 282 146 20 chr3 30886284 30886674 -187150484 + MLT1J1 LTR MaLR 1 439 -7 923 243 40 16 chr3 30886813 30887060 -187150098 + MER74B LTR ERVL 370 622 0 756 218 21 0 chr3 30887060 30887201 -187149957 - MLT1C LTR MaLR -323 144 1 269 275 156 19 chr3 30887663 30888009 -187149149 - L1M4 LINE L1 -1453 4693 4292 21 0 0 0 chr3 30888013 30888034 -187149124 + AT_rich Low_complexity Low_complexity 1 21 0 239 151 38 0 chr3 30888055 30888108 -187149050 + L1MC4 LINE L1 6648 6702 -1340 249 322 35 9 chr3 30888491 30888606 -187148552 - L1MC/D LINE L1 -1921 5887 5770 1110 274 40 3 chr3 30889176 30889501 -187147657 - MER46C DNA MER2_type -1 337 1 1598 191 3 28 chr3 30889656 30889975 -187147183 - AluJo SINE Alu 0 312 2 203 152 0 0 chr3 30890713 30890746 -187146412 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 281 339 8 0 chr3 30890727 30890848 -187146310 + (TA)n Simple_repeat Simple_repeat 1 122 0 374 174 122 20 chr3 30890941 30891039 -187146119 - L1MC5 LINE L1 -109 7852 7745 1904 129 46 0 chr3 30891591 30891871 -187145287 - AluSx SINE Alu -19 293 1 425 259 69 23 chr3 30892202 30892333 -187144825 + MIR SINE MIR 76 212 -50 407 300 67 44 chr3 30892973 30893153 -187144005 + MIR SINE MIR 9 192 -70 184 316 13 0 chr3 30893206 30893282 -187143876 - MIR SINE MIR 0 262 186 340 266 56 63 chr3 30893475 30893618 -187143540 + L2 LINE L2 3159 3300 -13 1359 231 26 102 chr3 30894847 30895375 -187141783 + LTR16C LTR ERVL 1 488 -3 16451 193 60 22 chr3 30895805 30895968 -187141190 - L1M1 LINE L1 -3994 3571 3416 2315 119 0 0 chr3 30895968 30896280 -187140878 - AluSx SINE Alu 0 312 1 16451 193 60 22 chr3 30896280 30899545 -187137613 - L1M1 LINE L1 -4149 3416 11 225 326 44 37 chr3 30899561 30899696 -187137462 - L2 LINE L2 -995 2319 2184 2278 294 159 25 chr3 30899718 30900744 -187136414 - L2 LINE L2 -1096 2218 1029 1514 237 46 3 chr3 30900744 30901094 -187136064 + MLT1A1 LTR MaLR 1 365 0 2278 294 159 25 chr3 30901094 30901183 -187135975 - L2 LINE L2 -2285 1029 953 219 319 0 0 chr3 30901629 30901698 -187135460 + MIR3 SINE MIR 137 205 -3 219 309 0 0 chr3 30902026 30902081 -187135077 + GA-rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr3 30902222 30902248 -187134910 + AT_rich Low_complexity Low_complexity 1 26 0 443 294 0 0 chr3 30902273 30902399 -187134759 + L1MD2 LINE L1 56 181 -6359 1276 253 119 6 chr3 30902620 30903263 -187133895 + L1MD2 LINE L1 2423 3145 -3395 1122 239 34 34 chr3 30903265 30903606 -187133552 - MSTD LTR MaLR 0 396 29 226 273 9 18 chr3 30903619 30903729 -187133429 + L1MD2 LINE L1 3144 3252 -3288 2066 285 56 29 chr3 30903734 30904742 -187132416 + L1MD2 LINE L1 4487 5537 -1003 1961 141 3 17 chr3 30904742 30905040 -187132118 + AluSx SINE Alu 1 294 -18 2066 285 56 29 chr3 30905040 30905289 -187131869 + L1MD2 LINE L1 5537 5778 -762 2386 170 29 0 chr3 30905290 30905732 -187131426 + L1MC2 LINE L1 5707 6161 -183 280 219 73 0 chr3 30905756 30905838 -187131320 + L1MC2 LINE L1 6246 6333 -11 * 15317 35 20 0 chr3 30905836 30908419 -187128739 + L1PA5 LINE L1 3514 6154 0 1989 210 91 47 chr3 30908463 30909057 -187128101 + L1MD2 LINE L1 5771 6390 -246 745 244 80 36 chr3 30909090 30909364 -187127794 + L1MD2 LINE L1 6455 6740 -13 268 265 32 28 chr3 30910403 30910512 -187126646 - MIR SINE MIR -66 142 72 441 326 87 9 chr3 30911383 30911613 -187125545 + LTR33 LTR ERVL 192 439 -82 396 0 0 0 chr3 30911700 30911744 -187125414 + (TG)n Simple_repeat Simple_repeat 1 44 0 2037 78 0 7 chr3 30911744 30912014 -187125144 - AluY SINE Alu -33 278 11 1779 162 19 16 chr3 30912932 30913241 -187123917 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr3 30913343 30913364 -187123794 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr3 30913651 30913680 -187123478 + (TG)n Simple_repeat Simple_repeat 2 30 0 286 77 0 0 chr3 30913900 30913939 -187123219 + MADE1 DNA Mariner 42 80 0 200 240 67 53 chr3 30913960 30914035 -187123123 - MIR SINE MIR -140 122 47 199 191 0 149 chr3 30915163 30915257 -187121901 + L2 LINE L2 3149 3228 -85 678 347 92 9 chr3 30915840 30916186 -187120972 + MLT1K LTR MaLR 8 382 -206 297 331 67 61 chr3 30916226 30916450 -187120708 - MIR SINE MIR -24 238 9 461 238 210 0 chr3 30917687 30917830 -187119328 + MER5A DNA MER1_type 10 182 -7 746 220 20 0 chr3 30918071 30918221 -187118937 - MER5A DNA MER1_type 0 189 37 249 170 21 0 chr3 30920158 30920205 -187116953 - MLT2D LTR ERVL 0 414 367 967 202 79 9 chr3 30920209 30920437 -187116721 - MLT2D LTR ERVL -167 247 4 2080 143 14 6 chr3 30920493 30920849 -187116309 - L1PA13 LINE L1 -5 6158 5800 2485 191 39 4 chr3 30920992 30921480 -187115678 - MLT1D LTR MaLR 0 505 1 337 321 28 0 chr3 30921542 30921651 -187115507 - MER63A DNA MER1_type 0 210 99 585 208 13 82 chr3 30922023 30922098 -187115060 + MER45A DNA AcHobo 28 88 -1493 1963 125 7 0 chr3 30922098 30922378 -187114780 - AluSx SINE Alu -5 307 26 585 208 13 82 chr3 30922378 30922461 -187114697 + MER45A DNA AcHobo 88 175 -3 570 147 0 0 chr3 30923741 30923843 -187113315 + L1MA4 LINE L1 6197 6298 -2 540 368 36 4 chr3 30925736 30925986 -187111172 + MIR SINE MIR 5 262 0 240 35 0 0 chr3 30927304 30927333 -187109825 + (CA)n Simple_repeat Simple_repeat 2 30 0 205 265 20 0 chr3 30927511 30927560 -187109598 + MIR SINE MIR 56 105 -157 1254 145 185 65 chr3 30928547 30928872 -187108286 + THE1B LTR MaLR 1 364 0 22 56 0 0 chr3 30929036 30929072 -187108086 + AT_rich Low_complexity Low_complexity 1 36 0 243 358 67 8 chr3 30930586 30930706 -187106452 + MIR SINE MIR 94 220 -42 1396 188 58 136 chr3 30930848 30931489 -187105669 + LTR49 LTR ERV1 1 584 -11 691 272 103 13 chr3 30931513 30931829 -187105329 - LTR16A LTR ERVL 0 491 105 954 120 0 0 chr3 30932250 30932383 -187104775 + AluSq/x SINE Alu 2 134 -179 2286 98 3 0 chr3 30932384 30932681 -187104477 + AluSg SINE Alu 2 299 -11 1000 200 73 23 chr3 30932682 30932942 -187104216 + L1MB7 LINE L1 5902 6174 -10 1608 181 45 0 chr3 30932958 30933246 -187103912 + AluSx SINE Alu 2 302 -10 395 156 92 0 chr3 30933580 30933689 -187103469 + AluJo SINE Alu 15 133 -169 2105 108 13 10 chr3 30933744 30934050 -187103108 + AluSg1 SINE Alu 1 307 -2 1148 121 0 17 chr3 30934059 30934233 -187102925 + AluJo SINE Alu 130 300 -12 2334 78 0 3 chr3 30934382 30934676 -187102482 + AluSg1 SINE Alu 1 293 -16 2215 60 46 23 chr3 30934678 30934980 -187102178 + AluY SINE Alu 1 309 -2 384 265 94 0 chr3 30937232 30937349 -187099809 + MER5A DNA MER1_type 9 136 -53 1823 199 50 11 chr3 30937448 30937810 -187099348 + MER21A LTR ERV1 26 401 -530 2492 176 25 8 chr3 30937810 30938288 -187098870 + MER66B LTR ERV1 1 486 0 2336 231 91 9 chr3 30938293 30938844 -187098314 + MER66B-int LTR ERV1 8 603 -6073 2131 168 40 33 chr3 30938844 30939391 -187097767 + MLT2A2 LTR ERVL 1 554 0 1950 177 141 11 chr3 30939391 30939831 -187097327 + MER66B-int LTR ERV1 599 1095 -5581 725 269 6 0 chr3 30939929 30940085 -187097073 + MER66-int LTR ERV1 2946 3102 -3574 4837 189 57 16 chr3 30940180 30941101 -187096057 + MER66-int LTR ERV1 1212 2169 -4507 4255 212 26 21 chr3 30941089 30941948 -187095210 + MER66-int LTR ERV1 2336 3198 -3478 * 2424 149 50 5 chr3 30941968 30942370 -187094788 + MSTA LTR MaLR 1 420 -8 2943 68 12 10 chr3 30942631 30943031 -187094127 - L1PA7 LINE L1 0 6154 5754 1080 228 61 29 chr3 30943482 30943824 -187093334 + L1ME2 LINE L1 5803 6155 -9 195 314 0 0 chr3 30943895 30943946 -187093212 + L2 LINE L2 1851 1901 -1413 270 371 24 0 chr3 30945962 30946086 -187091072 + L1MC/D LINE L1 5450 5576 -2232 21 0 0 0 chr3 30946086 30946107 -187091051 + AT_rich Low_complexity Low_complexity 1 21 0 385 259 68 41 chr3 30946162 30946309 -187090849 + L1MC/D LINE L1 5589 5739 -382 215 225 14 0 chr3 30946435 30946506 -187090652 + (TA)n Simple_repeat Simple_repeat 2 73 0 758 248 0 0 chr3 30946581 30946734 -187090424 - FRAM SINE Alu -16 160 8 4112 205 61 18 chr3 30946796 30947897 -187089261 - L1MB7 LINE L1 -18 6166 4964 1936 132 0 3 chr3 30947897 30948184 -187088974 - AluSc SINE Alu -21 288 3 4112 205 61 18 chr3 30948184 30948930 -187088228 - L1MB7 LINE L1 -1220 4964 4252 1267 201 19 87 chr3 30948987 30949296 -187087862 - AluJo SINE Alu -22 290 3 867 273 18 0 chr3 30949419 30949639 -187087519 + MER58A DNA MER1_type 1 224 0 21 57 0 0 chr3 30949888 30949923 -187087235 + AT_rich Low_complexity Low_complexity 1 35 0 1928 151 3 19 chr3 30950141 30950452 -187086706 + AluJb SINE Alu 3 308 -4 2223 37 0 0 chr3 30952215 30952487 -187084671 + L1PA2 LINE L1 5884 6155 0 1942 215 56 16 chr3 30952612 30953096 -187084062 + L1MD3 LINE L1 7425 7927 -68 1411 195 41 11 chr3 30953159 30953611 -187083547 + L1M4 LINE L1 5016 5482 -702 296 333 184 19 chr3 30953730 30954160 -187082998 - L2 LINE L2 -556 2758 2258 216 0 0 0 chr3 30954613 30954637 -187082521 + (A)n Simple_repeat Simple_repeat 1 24 0 1644 109 97 12 chr3 30957980 30958275 -187078883 - AluSc SINE Alu 0 317 1 368 280 30 38 chr3 30958704 30958836 -187078322 - L2 LINE L2 -1 3271 3141 315 294 63 8 chr3 30958935 30959061 -187078097 + MIR SINE MIR 32 164 -98 826 262 105 94 chr3 30959068 30959641 -187077517 + MLT1G LTR MaLR 10 588 -2 651 262 55 0 chr3 30960932 30961096 -187076062 - MER45A DNA AcHobo -5 173 1 757 155 139 48 chr3 30961897 30962084 -187075074 - MER20 DNA MER1_type 0 219 16 578 331 40 16 chr3 30962134 30962385 -187074773 + MIR SINE MIR 1 257 -5 248 315 0 0 chr3 30962915 30962988 -187074170 - MIR SINE MIR -6 256 184 21 0 0 0 chr3 30964689 30964710 -187072448 + AT_rich Low_complexity Low_complexity 1 21 0 1096 101 132 0 chr3 30964924 30965113 -187072045 - MER44D DNA MER2_type 0 605 337 368 59 59 0 chr3 30965166 30965217 -187071941 + Tigger7 DNA MER2_type 278 331 -402 1215 220 11 34 chr3 30965250 30965518 -187071640 - Tigger7 DNA MER2_type -2224 263 2 228 67 0 0 chr3 30965547 30965577 -187071581 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 2378 148 11 44 chr3 30966201 30966660 -187070498 + MLT2A1 LTR ERVL 1 444 0 4263 213 108 31 chr3 30968963 30970271 -187066887 - Charlie1a DNA MER1_type 0 1455 48 2319 65 0 28 chr3 30970568 30970889 -187066269 + L1PA8 LINE L1 5858 6169 -3 258 32 0 0 chr3 30971453 30971484 -187065674 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 927 278 92 41 chr3 30971866 30972355 -187064803 + LTR33 LTR ERVL 6 519 -2 26 30 0 0 chr3 30972393 30972426 -187064732 + AT_rich Low_complexity Low_complexity 1 33 0 242 204 31 122 chr3 30973024 30973122 -187064036 + MIR SINE MIR 100 188 -74 631 320 57 16 chr3 30973201 30973573 -187063585 + L2 LINE L2 2365 2751 -563 998 311 87 28 chr3 30973609 30974034 -187063124 + L2 LINE L2 2864 3313 0 920 195 33 14 chr3 30974071 30974286 -187062872 + MER20 DNA MER1_type 1 219 0 182 207 0 103 chr3 30975052 30975110 -187062048 + L2 LINE L2 3262 3313 0 576 285 111 19 chr3 30975370 30975640 -187061518 - L2 LINE L2 -5 3308 3014 404 352 93 30 chr3 30976089 30976325 -187060833 - MIR SINE MIR -6 256 6 21 36 0 0 chr3 30978764 30978792 -187058366 + AT_rich Low_complexity Low_complexity 1 28 0 632 281 99 5 chr3 30978792 30978984 -187058174 - MER58A DNA MER1_type -1 223 14 510 310 83 14 chr3 30979127 30979343 -187057815 + MIR SINE MIR 31 261 -1 198 103 0 0 chr3 30979431 30979460 -187057698 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 205 365 111 0 chr3 30979477 30979603 -187057555 + L2 LINE L2 3132 3271 -1 209 262 33 0 chr3 30981447 30981508 -187055650 + (TTCA)n Simple_repeat Simple_repeat 3 65 0 258 363 66 25 chr3 30981837 30982114 -187055044 + L2 LINE L2 2757 3050 -222 1627 243 133 0 chr3 30982191 30982590 -187054568 + Tigger5 DNA MER2_type 1 452 -1871 292 191 95 0 chr3 30982594 30982657 -187054501 + Tigger5 DNA MER2_type 2240 2308 -15 230 254 0 16 chr3 30983397 30983460 -187053698 + A-rich Low_complexity Low_complexity 2 63 0 669 255 98 25 chr3 30983723 30983927 -187053231 + MER20 DNA MER1_type 1 219 0 744 169 174 23 chr3 30983938 30984157 -187053001 - LTR37A LTR ERV1 0 426 175 2214 112 0 0 chr3 30986132 30986427 -187050731 + AluSx SINE Alu 5 299 -13 29 47 0 0 chr3 30986474 30986517 -187050641 + AT_rich Low_complexity Low_complexity 1 43 0 316 350 88 81 chr3 30987907 30988227 -187048931 - L2 LINE L2 -56 3216 2895 181 336 62 76 chr3 30988282 30988493 -187048665 + L2 LINE L2 3020 3227 -45 2497 125 0 0 chr3 30989440 30989807 -187047351 - L1PB1 LINE L1 -3 6148 5782 11097 186 32 17 chr3 30989526 30989829 -187047329 - L1PA16 LINE L1 -99 6067 5770 1014 157 0 0 chr3 30989829 30990007 -187047151 + (TA)n Simple_repeat Simple_repeat 2 179 0 11097 186 32 17 chr3 30990007 30993085 -187044073 - L1PA16 LINE L1 -396 5770 2682 3093 132 91 1 chr3 30993084 30993780 -187043378 + L1PA16 LINE L1 2656 3415 -3447 * 657 306 34 17 chr3 30993933 30994168 -187042990 + MIR SINE MIR 22 260 -2 2097 114 13 7 chr3 30994562 30994868 -187042290 - AluY SINE Alu 0 311 4 1462 67 0 0 chr3 30995916 30996109 -187041049 - L1PA4 LINE L1 -3 6152 5960 23 33 0 0 chr3 30996572 30996602 -187040556 + AT_rich Low_complexity Low_complexity 1 30 0 6698 268 57 15 chr3 30996674 31000596 -187036562 - L1 LINE L1 -2889 3843 2 226 250 113 24 chr3 31001099 31001223 -187035935 - L1M3d LINE L1 -5753 138 4 694 251 5 21 chr3 31001333 31001524 -187035634 - MLT1A2 LTR MaLR -183 191 4 22 0 0 0 chr3 31001770 31001792 -187035366 + AT_rich Low_complexity Low_complexity 1 22 0 352 332 48 24 chr3 31002137 31002345 -187034813 - L1M4 LINE L1 -2301 3845 3633 666 202 42 72 chr3 31004085 31004278 -187032880 + MER5A DNA MER1_type 3 189 0 272 366 31 26 chr3 31004984 31005175 -187031983 + MIR SINE MIR 23 214 -48 22 35 0 0 chr3 31006126 31006155 -187031003 + AT_rich Low_complexity Low_complexity 1 29 0 437 188 10 59 chr3 31006390 31006491 -187030667 - Zaphod DNA AcHobo -2 4029 3934 521 269 50 19 chr3 31006550 31006710 -187030448 - MLT1G1 LTR MaLR -2 593 429 355 278 35 77 chr3 31006790 31006959 -187030199 - LTR16B LTR ERVL -12 452 291 1068 189 95 10 chr3 31057474 31057784 -186979374 - MER33 DNA MER1_type 0 324 1 368 299 132 36 chr3 31058193 31058527 -186978631 - L1M4 LINE L1 -1456 4690 4325 296 265 120 0 chr3 31058729 31058846 -186978312 + MLT1J LTR MaLR 7 137 -374 330 261 32 96 chr3 31059113 31059270 -186977888 - L1MEd LINE L1 -5956 163 17 2200 118 7 0 chr3 31059403 31059707 -186977451 - AluSq SINE Alu -5 308 3 5353 152 40 13 chr3 31060082 31061114 -186976044 + L1MA8 LINE L1 5226 6285 -6 546 370 20 24 chr3 31061366 31061823 -186975335 - L1ME3A LINE L1 -208 5962 5508 2123 114 3 0 chr3 31062007 31062297 -186974861 + AluSc SINE Alu 1 291 -18 2670 16 0 7 chr3 31062318 31062622 -186974536 + AluY SINE Alu 1 302 -9 251 272 37 0 chr3 31062800 31062881 -186974277 - HAL1b LINE L1 -817 531 448 319 365 14 7 chr3 31062891 31063036 -186974122 - HAL1 LINE L1 -998 1509 1364 1275 182 83 10 chr3 31063208 31063510 -186973648 - MER33 DNA MER1_type 0 324 1 23 0 0 0 chr3 31063981 31064004 -186973154 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 31064198 31064224 -186972934 + (A)n Simple_repeat Simple_repeat 1 26 0 1877 158 0 7 chr3 31064537 31064840 -186972318 + AluSx SINE Alu 1 301 -11 368 306 56 35 chr3 31066140 31066284 -186970874 - L2 LINE L2 -25 3288 3142 1055 236 122 46 chr3 31066342 31066736 -186970422 + LTR16A LTR ERVL 25 448 -2 388 360 63 13 chr3 31067071 31067310 -186969848 - MIR SINE MIR -1 261 11 21 36 0 0 chr3 31067355 31067383 -186969775 + AT_rich Low_complexity Low_complexity 1 28 0 286 400 17 22 chr3 31068703 31068883 -186968275 - MER115 DNA AcHobo -498 195 17 216 158 0 0 chr3 31069665 31069703 -186967455 + (TG)n Simple_repeat Simple_repeat 2 39 0 403 182 48 0 chr3 31069717 31069882 -186967276 + (TA)n Simple_repeat Simple_repeat 1 173 0 4751 143 54 23 chr3 31070805 31071732 -186965426 + L1 LINE L1 4167 5122 -1024 1405 176 96 53 chr3 31071910 31072084 -186965074 + MLT1B LTR MaLR 1 166 -224 1861 118 9 60 chr3 31072084 31072399 -186964759 + AluSp SINE Alu 1 299 -14 222 37 0 0 chr3 31072399 31072426 -186964732 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1405 176 96 53 chr3 31072426 31072624 -186964534 + MLT1B LTR MaLR 165 390 0 259 292 125 25 chr3 31072811 31072931 -186964227 + L2 LINE L2 3139 3270 -2 295 329 67 18 chr3 31074607 31074771 -186962387 - MIR SINE MIR -89 173 2 369 85 0 0 chr3 31074798 31074857 -186962301 + L1MD2 LINE L1 6300 6358 -1 1358 272 160 19 chr3 31077274 31077863 -186959295 + L2 LINE L2 535 1206 -2108 483 260 81 108 chr3 31077880 31078103 -186959055 + MIR SINE MIR 46 262 0 203 205 77 0 chr3 31078233 31078311 -186958847 + (TTAAA)n Simple_repeat Simple_repeat 2 85 0 766 204 0 25 chr3 31078554 31078711 -186958447 - MER3 DNA MER1_type -56 153 1 21 36 0 0 chr3 31078720 31078748 -186958410 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 31079353 31079381 -186957777 + AT_rich Low_complexity Low_complexity 1 28 0 1525 231 25 41 chr3 31080221 31080615 -186956543 - MLT1I LTR MaLR -21 388 1 26 0 0 0 chr3 31083086 31083112 -186954046 + AT_rich Low_complexity Low_complexity 1 26 0 397 304 101 14 chr3 31084967 31085174 -186951984 + MIR SINE MIR 1 225 -37 290 299 82 13 chr3 31085245 31085486 -186951672 - L1MC/D LINE L1 -450 5671 5535 22 70 0 0 chr3 31085686 31085729 -186951429 + AT_rich Low_complexity Low_complexity 1 43 0 7470 23 6 4 chr3 31087233 31088234 -186948924 + L1PA4 LINE L1 5154 6155 0 449 270 34 39 chr3 31088579 31088757 -186948401 - MLT1K LTR MaLR -36 552 376 670 214 11 93 chr3 31088867 31088943 -186948215 - MER106B DNA MER1_type 0 236 155 2733 115 14 14 chr3 31088943 31089370 -186947788 - L1PB1 LINE L1 -1 6150 5724 670 214 11 93 chr3 31089370 31089546 -186947612 - MER106B DNA MER1_type -81 155 1 201 353 141 18 chr3 31090039 31090365 -186946793 - L2 LINE L2 -887 2427 2062 1750 200 59 122 chr3 31090481 31091196 -186945962 + LTR8A LTR ERV1 34 703 -24 421 335 79 0 chr3 31091397 31091549 -186945609 + MIR SINE MIR 30 193 -69 1189 183 173 145 chr3 31091622 31091818 -186945340 + LTR48 LTR ERV1 1 190 -454 1648 122 4 0 chr3 31091818 31092048 -186945110 + AluSp SINE Alu 5 235 -78 1189 183 173 145 chr3 31092048 31092548 -186944610 + LTR48 LTR ERV1 190 573 -71 1862 148 20 10 chr3 31092561 31092859 -186944299 + AluSx SINE Alu 1 301 -11 36 91 0 0 chr3 31094159 31094258 -186942900 + AT_rich Low_complexity Low_complexity 1 99 0 1675 253 100 60 chr3 31094808 31095751 -186941407 + Zaphod DNA AcHobo 9 988 -3043 180 0 0 0 chr3 31095995 31096015 -186941143 + (T)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr3 31096186 31096213 -186940945 + AT_rich Low_complexity Low_complexity 1 27 0 2290 86 0 3 chr3 31096495 31096786 -186940372 - AluY SINE Alu -21 290 1 346 384 87 5 chr3 31097381 31097600 -186939558 - HAL1b LINE L1 -732 616 380 26 0 0 0 chr3 31098752 31098778 -186938380 + AT_rich Low_complexity Low_complexity 1 26 0 378 305 123 17 chr3 31098828 31099064 -186938094 - MIR SINE MIR -1 261 1 330 260 110 20 chr3 31099554 31099846 -186937312 + L1M4 LINE L1 4359 4676 -1470 839 226 58 58 chr3 31099972 31100233 -186936925 + MIR SINE MIR 1 261 -1 1779 163 20 0 chr3 31100606 31100901 -186936257 + AluSx SINE Alu 4 304 -8 499 191 9 19 chr3 31101855 31101960 -186935198 - L1ME3A LINE L1 -39 6131 6028 310 316 125 7 chr3 31103119 31103271 -186933887 - L1MDb LINE L1 -3983 2604 2435 23 68 0 0 chr3 31105391 31105435 -186931723 + AT_rich Low_complexity Low_complexity 1 44 0 1896 237 76 28 chr3 31105902 31106713 -186930445 - L1MDb LINE L1 -4474 1932 1072 399 270 226 15 chr3 31107049 31107323 -186929835 - L1MEc LINE L1 -4002 2394 2063 343 256 104 24 chr3 31107536 31107700 -186929458 - HAL1 LINE L1 -828 1679 1503 227 260 44 44 chr3 31107712 31107893 -186929265 - L1MEc LINE L1 -4934 1462 1282 350 277 62 18 chr3 31107984 31108096 -186929062 - L2 LINE L2 -5 3308 3192 2364 205 114 2 chr3 31108125 31108677 -186928481 + MER90 LTR ERV1 1 614 0 28 0 0 0 chr3 31108793 31108821 -186928337 + AT_rich Low_complexity Low_complexity 1 28 0 1866 114 0 0 chr3 31109808 31110054 -186927104 - AluSx SINE Alu -66 246 1 264 308 84 28 chr3 31110424 31110531 -186926627 - L2 LINE L2 -5 3267 3155 1986 141 0 0 chr3 31111421 31111704 -186925454 + AluSx SINE Alu 5 287 -25 841 256 19 5 chr3 31112309 31112516 -186924642 + MER58A DNA MER1_type 11 220 -4 319 300 0 0 chr3 31112758 31112838 -186924320 - MER5A DNA MER1_type 0 189 110 261 0 0 0 chr3 31113110 31113139 -186924019 + (TG)n Simple_repeat Simple_repeat 1 29 0 278 271 171 16 chr3 31113162 31113291 -186923867 + MIR SINE MIR 6 154 -108 1611 134 0 109 chr3 31113333 31113653 -186923505 - AluJb SINE Alu -16 286 2 217 323 143 31 chr3 31113803 31113964 -186923194 - MER5A DNA MER1_type -9 180 2 218 95 24 0 chr3 31115597 31115639 -186921519 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 1332 273 31 23 chr3 31116377 31116766 -186920392 - MLT1I LTR MaLR 0 409 18 248 323 139 6 chr3 31116775 31116933 -186920225 + L2 LINE L2 3133 3311 -2 276 81 32 16 chr3 31117880 31117942 -186919216 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 26 0 0 0 chr3 31119344 31119370 -186917788 + AT_rich Low_complexity Low_complexity 1 26 0 269 341 81 8 chr3 31120549 31120672 -186916486 + MIR SINE MIR 16 147 -61 32 26 0 0 chr3 31120851 31120890 -186916268 + AT_rich Low_complexity Low_complexity 1 39 0 263 227 57 0 chr3 31121497 31121585 -186915573 - L1ME3A LINE L1 0 6170 6078 259 330 55 9 chr3 31121700 31121809 -186915349 - L2 LINE L2 -2 3311 3198 417 244 24 8 chr3 31122629 31122756 -186914402 - L1ME3A LINE L1 0 6170 6042 274 273 68 0 chr3 31122804 31122936 -186914222 - L1ME3A LINE L1 -219 5951 5811 4509 175 47 18 chr3 31123023 31124091 -186913067 + L1MB3 LINE L1 5072 6166 -17 26 0 0 0 chr3 31124863 31124889 -186912269 + AT_rich Low_complexity Low_complexity 1 26 0 343 279 39 8 chr3 31125128 31125257 -186911901 + L2 LINE L2 3177 3309 -4 22 70 0 0 chr3 31125323 31125366 -186911792 + AT_rich Low_complexity Low_complexity 1 43 0 1386 242 102 19 chr3 31125525 31125955 -186911203 + MLT1D LTR MaLR 40 505 0 702 282 81 8 chr3 31125976 31126210 -186910948 - MIR SINE MIR -11 251 1 1607 222 32 22 chr3 31127305 31127675 -186909483 - MLT1A2 LTR MaLR 0 374 1 277 340 41 0 chr3 31129502 31129599 -186907559 + MIR SINE MIR 76 176 -86 186 167 0 0 chr3 31130760 31130796 -186906362 + GA-rich Low_complexity Low_complexity 2 37 0 466 252 218 0 chr3 31132254 31132401 -186904757 - MER5A DNA MER1_type -2 187 9 355 261 34 0 chr3 31134042 31134130 -186903028 + MIR SINE MIR 98 188 -74 397 301 32 8 chr3 31134160 31134283 -186902875 + L2 LINE L2 3139 3264 -8 22 56 0 0 chr3 31134283 31134319 -186902839 + AT_rich Low_complexity Low_complexity 1 36 0 2758 31 0 0 chr3 31134605 31134923 -186902235 - AluYb8 SINE Alu 0 318 1 745 264 77 20 chr3 31134980 31135226 -186901932 - LTR16A LTR ERVL -6 444 185 346 167 0 0 chr3 31135473 31135533 -186901625 + MIR SINE MIR 129 188 -74 219 339 33 61 chr3 31135672 31135852 -186901306 - L2 LINE L2 -219 3053 2879 861 238 16 11 chr3 31136077 31136262 -186900896 + MER5A DNA MER1_type 3 188 -1 213 65 0 0 chr3 31136624 31136655 -186900503 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 428 154 0 13 chr3 31137069 31137147 -186900011 + MADE1 DNA Mariner 4 80 0 330 26 0 0 chr3 31137266 31137305 -186899853 + (TG)n Simple_repeat Simple_repeat 2 40 0 1005 171 11 11 chr3 31138032 31138388 -186898770 + GA-rich Low_complexity Low_complexity 1 356 0 247 239 45 34 chr3 31138469 31138557 -186898601 - MIR SINE MIR -108 154 66 803 232 27 5 chr3 31138582 31138767 -186898391 - MER5A DNA MER1_type 0 189 1 180 313 15 15 chr3 31138776 31138843 -186898315 + L2 LINE L2 3243 3309 -4 402 278 81 64 chr3 31139020 31139395 -186897763 - LTR16C LTR ERVL -48 409 13 324 0 0 0 chr3 31139477 31139513 -186897645 + (TG)n Simple_repeat Simple_repeat 2 37 0 338 205 0 0 chr3 31139513 31139591 -186897567 + MER116 DNA Mariner 1 78 -2 389 315 98 39 chr3 31140083 31140493 -186896665 - MLT1L LTR MaLR -4 611 178 344 169 0 12 chr3 31141192 31141275 -186895883 + GA-rich Low_complexity Low_complexity 2 83 0 24 0 0 0 chr3 31141733 31141757 -186895401 + AT_rich Low_complexity Low_complexity 1 24 0 5161 95 59 2 chr3 31142578 31143380 -186893778 + L1MA1 LINE L1 5451 6297 -5 203 350 206 0 chr3 31144803 31144900 -186892258 - MER91A DNA MER1_type -51 145 29 279 133 0 0 chr3 31145221 31145266 -186891892 + (TCCCC)n Simple_repeat Simple_repeat 5 49 0 1725 155 43 11 chr3 31145283 31145561 -186891597 - AluSx SINE Alu -25 287 1 803 200 54 32 chr3 31146043 31146070 -186891088 + MER5A DNA MER1_type 1 26 -163 219 69 0 0 chr3 31146070 31146099 -186891059 + (CCA)n Simple_repeat Simple_repeat 3 31 0 803 200 54 32 chr3 31146099 31146256 -186890902 + MER5A DNA MER1_type 26 189 0 2585 23 0 0 chr3 31146459 31146812 -186890346 + L1PA4 LINE L1 5852 6204 0 601 139 9 28 chr3 31146870 31146978 -186890180 + FLAM_C SINE Alu 31 136 -7 430 296 266 23 chr3 31147173 31147477 -186889681 + L3 LINE CR1 1195 1572 -5 474 291 81 17 chr3 31147508 31147680 -186889478 - MIR SINE MIR -1 261 79 547 213 41 0 chr3 31148346 31148468 -186888690 - L1MB4 LINE L1 -4 6176 6050 489 319 126 6 chr3 31149212 31149394 -186887764 - MIR3 SINE MIR -2 206 3 493 322 74 5 chr3 31149604 31149806 -186887352 + MIR SINE MIR 12 227 -35 209 364 74 12 chr3 31153778 31153940 -186883218 + L2 LINE L2 2890 3061 -211 10587 40 4 0 chr3 31154100 31156156 -186881002 - L1PA4 LINE L1 -3 6152 4089 189 276 138 52 chr3 31156189 31156305 -186880853 + L2 LINE L2 2342 2467 -847 633 316 62 32 chr3 31156372 31156742 -186880416 + LTR16B LTR ERVL 82 462 -2 4523 212 24 10 chr3 31156869 31157435 -186879723 - L1MB8 LINE L1 -5 6173 5617 2086 122 0 13 chr3 31157435 31157747 -186879411 - AluSc SINE Alu -1 308 1 4523 212 24 10 chr3 31157747 31159078 -186878080 - L1MB8 LINE L1 -561 5617 4247 191 382 113 16 chr3 31159080 31159266 -186877892 + L2 LINE L2 2605 2808 -506 345 226 0 0 chr3 31159903 31159987 -186877171 + (TA)n Simple_repeat Simple_repeat 1 84 0 2342 97 3 0 chr3 31159987 31160285 -186876873 - AluSp SINE Alu -14 299 1 195 407 68 0 chr3 31160376 31160494 -186876664 - L2 LINE L2 -220 3052 2927 305 195 305 42 chr3 31160933 31161051 -186876107 + MER5A DNA MER1_type 41 189 0 254 108 0 0 chr3 31161658 31161695 -186875463 - MADE1 DNA Mariner -43 37 1 28 29 0 0 chr3 31162628 31162663 -186874495 + AT_rich Low_complexity Low_complexity 1 35 0 1531 120 0 5 chr3 31163488 31163705 -186873453 - AluSx SINE Alu -96 216 1 377 275 126 84 chr3 31163784 31164093 -186873065 - L1MC4 LINE L1 -1043 6999 6678 198 344 53 53 chr3 31165640 31165771 -186871387 + MIR SINE MIR 26 156 -106 596 124 62 0 chr3 31166149 31166246 -186870912 - MLT1F1 LTR MaLR 0 567 465 424 229 19 9 chr3 31166811 31166916 -186870242 - LTR16A LTR ERVL -4 446 341 580 174 17 0 chr3 31167443 31167558 -186869600 - L1MA9 LINE L1 -22 6290 6174 23 0 0 0 chr3 31167587 31167610 -186869548 + AT_rich Low_complexity Low_complexity 1 23 0 29223 119 19 59 chr3 31167632 31173824 -186863334 - L1PA8 LINE L1 -226 5946 12 200 333 27 0 chr3 31174380 31174455 -186862703 - MIR SINE MIR -108 154 78 200 333 27 0 chr3 31175035 31175110 -186862048 - MIR SINE MIR -108 154 78 197 250 0 0 chr3 31176171 31176211 -186860947 + MIR SINE MIR 93 132 -130 7269 114 123 117 chr3 31176263 31177949 -186859209 + pTR5 LTR ERV1 743 2438 0 287 184 0 0 chr3 31179244 31179293 -186857865 - MER21A LTR ERV1 -870 61 13 279 79 0 0 chr3 31179301 31179339 -186857819 + (TG)n Simple_repeat Simple_repeat 2 39 0 3999 186 71 38 chr3 31179362 31180231 -186856927 + MER21A LTR ERV1 32 929 -2 1020 154 6 0 chr3 31180687 31180856 -186856302 - MER3 DNA MER1_type -82 127 5 1531 303 37 17 chr3 31182330 31182946 -186854212 - L2 LINE L2 -187 3126 2501 263 172 0 17 chr3 31183589 31183647 -186853511 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 24 32 0 0 chr3 31183666 31183697 -186853461 + AT_rich Low_complexity Low_complexity 1 31 0 1097 285 201 20 chr3 31184761 31186013 -186851145 + L1MC2 LINE L1 37 1554 -4842 4902 259 84 32 chr3 31186044 31188248 -186848910 + L1MC2 LINE L1 2364 4673 -1542 305 288 211 36 chr3 31191334 31191671 -186845487 - HAL1b LINE L1 -572 776 381 277 346 0 0 chr3 31192336 31192417 -186844741 - L2 LINE L2 -668 2646 2566 4296 14 0 0 chr3 31193296 31193832 -186843326 + L1PA2 LINE L1 5660 6195 0 186 43 0 0 chr3 31194085 31194108 -186843050 + (GA)n Simple_repeat Simple_repeat 2 24 0 4266 182 30 15 chr3 31194108 31195015 -186842143 + L1MC2 LINE L1 5494 6413 0 22 0 0 0 chr3 31195132 31195154 -186842004 + AT_rich Low_complexity Low_complexity 1 22 0 851 134 0 0 chr3 31196108 31196220 -186840938 + AluSq/x SINE Alu 3 114 -199 201 108 0 0 chr3 31196301 31196338 -186840820 + (A)n Simple_repeat Simple_repeat 1 37 0 1118 112 56 17 chr3 31196342 31196521 -186840637 + AluSg/x SINE Alu 126 311 -1 655 327 28 5 chr3 31196574 31196785 -186840373 - MIR SINE MIR -44 218 3 4523 161 24 4 chr3 31197151 31198023 -186839135 - L1MA8 LINE L1 -207 6084 5197 220 240 39 19 chr3 31198156 31198260 -186838898 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 618 183 142 22 chr3 31198282 31198439 -186838719 - MIR SINE MIR -62 146 5 872 221 22 36 chr3 31199001 31199223 -186837935 + MER20 DNA MER1_type 1 219 0 3344 223 93 39 chr3 31200146 31201271 -186835887 + L1MC4 LINE L1 6857 8042 0 2300 126 16 22 chr3 31201280 31201646 -186835512 + THE1B LTR MaLR 1 364 0 251 261 52 60 chr3 31201872 31202006 -186835152 + MIR SINE MIR 86 218 -44 253 312 11 26 chr3 31202389 31202575 -186834583 - MIR SINE MIR -12 250 3 420 332 65 17 chr3 31202926 31203158 -186834000 + MIR SINE MIR 18 260 -2 240 86 0 0 chr3 31203843 31203878 -186833280 + (TTA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr3 31204284 31204319 -186832839 + AT_rich Low_complexity Low_complexity 1 35 0 744 147 0 0 chr3 31204389 31204525 -186832633 + (GGAA)n Simple_repeat Simple_repeat 4 139 0 7436 40 1 0 chr3 31205075 31205985 -186831173 - L1PA4 LINE L1 -3064 3318 2405 18696 38 0 0 chr3 31205985 31207240 -186829918 + L1PA4 LINE L1 3312 4566 -1825 2083 85 39 39 chr3 31207240 31207547 -186829611 - AluY SINE Alu -4 307 1 18696 38 0 0 chr3 31207547 31209381 -186827777 + L1PA4 LINE L1 4565 6391 0 7436 40 1 0 chr3 31209381 31209395 -186827763 - L1M4c LINE L1 -3977 2405 2393 233 250 18 0 chr3 31209576 31209632 -186827526 - Charlie8 DNA MER1_type -1001 1416 1360 1847 129 43 13 chr3 31210080 31210382 -186826776 + AluJo SINE Alu 1 311 -1 323 313 23 15 chr3 31210384 31210515 -186826643 - LTR67 LTR ERVL -12 545 414 1835 290 118 12 chr3 31210552 31211401 -186825757 + HAL1 LINE L1 25 963 -1544 1996 272 142 25 chr3 31211411 31212711 -186824447 + HAL1 LINE L1 1055 2507 0 699 253 28 11 chr3 31212864 31213042 -186824116 + MER5A DNA MER1_type 1 181 -8 636 282 17 6 chr3 31213068 31213249 -186823909 - MER5A DNA MER1_type 0 189 7 1762 217 64 14 chr3 31213249 31213747 -186823411 - Charlie1b DNA MER1_type 0 523 1 2425 43 4 0 chr3 31215366 31215670 -186821488 - AluY SINE Alu 0 307 3 231 250 0 0 chr3 31217498 31217566 -186819592 + GA-rich Low_complexity Low_complexity 3 70 0 191 289 111 0 chr3 31218209 31218299 -186818859 + MER5A DNA MER1_type 7 106 -83 1739 138 91 50 chr3 31218740 31219123 -186818035 - L1MA9 LINE L1 -9 6303 5905 * 3629 171 23 18 chr3 31219120 31220353 -186816805 + L1MA9 LINE L1 4627 5869 -443 24 32 0 0 chr3 31220398 31220429 -186816729 + AT_rich Low_complexity Low_complexity 1 31 0 554 228 8 120 chr3 31220539 31220645 -186816513 - MER58C DNA MER1_type -2206 214 148 679 179 17 0 chr3 31220645 31220762 -186816396 + FLAM_A SINE Alu 1 119 -14 554 228 8 120 chr3 31220762 31220896 -186816262 - MER58C DNA MER1_type -2272 148 1 544 268 16 66 chr3 31223480 31223723 -186813435 - L2 LINE L2 -8 3305 3075 475 272 175 26 chr3 31223840 31224068 -186813090 + MIR SINE MIR 1 262 0 510 272 61 7 chr3 31225364 31225511 -186811647 + MLT1I LTR MaLR 47 201 -208 216 256 0 0 chr3 31226227 31226270 -186810888 - MIR3 SINE MIR -21 187 145 1985 137 11 0 chr3 31226634 31226919 -186810239 + AluSq SINE Alu 1 288 -25 268 279 84 63 chr3 31227004 31227234 -186809924 - MIR SINE MIR 0 262 30 245 321 28 46 chr3 31228941 31229050 -186808108 + MIR SINE MIR 156 262 0 1923 76 4 0 chr3 31229091 31229341 -186807817 + L1PA7 LINE L1 5888 6138 -16 264 421 103 0 chr3 31229738 31229971 -186807187 - L2 LINE L2 -253 3060 2804 355 240 0 56 chr3 31230297 31230422 -186806736 + L1MC5 LINE L1 7808 7925 -36 387 291 172 0 chr3 31230720 31230871 -186806287 - MER5A DNA MER1_type -6 183 7 1524 211 77 32 chr3 31231417 31231796 -186805362 - MSTD LTR MaLR 0 396 1 2402 88 0 3 chr3 31232418 31232726 -186804432 - AluSg SINE Alu -1 309 3 1960 107 3 17 chr3 31233055 31233445 -186803713 + AluSp SINE Alu 1 386 0 754 247 209 30 chr3 31233496 31233893 -186803265 + MLT1K LTR MaLR 121 588 0 1814 152 7 7 chr3 31234211 31234507 -186802651 - AluSx SINE Alu -16 296 1 23 54 0 0 chr3 31234591 31234628 -186802530 + AT_rich Low_complexity Low_complexity 1 37 0 297 243 106 25 chr3 31235093 31235291 -186801867 + MIR SINE MIR 15 225 -37 815 281 132 18 chr3 31235320 31235654 -186801504 + LTR16A LTR ERVL 65 436 -14 21 0 0 0 chr3 31236001 31236022 -186801136 + AT_rich Low_complexity Low_complexity 1 21 0 210 250 0 0 chr3 31236041 31236085 -186801073 + MIR3 SINE MIR 164 207 -1 315 343 6 40 chr3 31236369 31236544 -186800614 - MIR3 SINE MIR -26 182 14 22 35 0 0 chr3 31237129 31237158 -186800000 + AT_rich Low_complexity Low_complexity 1 29 0 462 339 21 43 chr3 31238140 31238373 -186798785 - MIR SINE MIR -32 230 3 246 32 0 0 chr3 31238526 31238557 -186798601 + (CA)n Simple_repeat Simple_repeat 2 32 0 2163 200 43 49 chr3 31238714 31239192 -186797966 + MLT2B1 LTR ERVL 1 477 -43 441 0 0 0 chr3 31239192 31239241 -186797917 + (CA)n Simple_repeat Simple_repeat 2 50 0 2163 200 43 49 chr3 31239241 31239273 -186797885 + MLT2B1 LTR ERVL 477 508 -12 498 26 40 0 chr3 31239508 31239584 -186797574 + (TG)n Simple_repeat Simple_repeat 2 80 0 684 222 0 0 chr3 31239584 31239701 -186797457 - FLAM_A SINE Alu -15 118 2 635 290 55 15 chr3 31240304 31240504 -186796654 + MIR SINE MIR 23 230 -32 248 200 32 63 chr3 31241694 31241731 -186795427 - L1MC4 LINE L1 -1298 6744 6707 315 0 0 0 chr3 31241731 31241766 -186795392 + (TG)n Simple_repeat Simple_repeat 2 36 0 248 200 32 63 chr3 31241766 31241823 -186795335 - L1MC4 LINE L1 -1335 6707 6653 10018 35 0 0 chr3 31242056 31244031 -186793127 + L1PA4 LINE L1 4173 6148 -7 23 0 0 0 chr3 31247310 31247333 -186789825 + AT_rich Low_complexity Low_complexity 1 23 0 410 36 18 0 chr3 31248672 31248728 -186788430 + (TG)n Simple_repeat Simple_repeat 2 58 0 487 256 35 74 chr3 31249123 31249326 -186787832 + HAL1 LINE L1 1 195 -2312 265 358 30 8 chr3 31249662 31249796 -186787362 - MIR3 SINE MIR -49 159 23 309 256 111 11 chr3 31250620 31250710 -186786448 + MIR SINE MIR 43 141 -67 203 364 34 0 chr3 31250874 31250962 -186786196 + MIR SINE MIR 53 143 -65 * 414 246 9 18 chr3 31250959 31251069 -186786089 - L2 LINE L2 0 3313 3205 223 282 118 27 chr3 31251073 31251183 -186785975 + MIR SINE MIR 143 262 0 296 318 99 10 chr3 31251219 31251363 -186785795 - MIR3 SINE MIR -63 145 10 627 233 83 75 chr3 31251375 31251482 -186785676 + MER97a DNA MER1_type? 1 106 -788 2799 146 34 6 chr3 31251482 31251981 -186785177 + L1MB3 LINE L1 5669 6181 -2 627 233 83 75 chr3 31251981 31252126 -186785032 + MER97a DNA MER1_type? 106 255 -639 27 0 0 0 chr3 31252169 31252196 -186784962 + AT_rich Low_complexity Low_complexity 1 27 0 1266 224 95 53 chr3 31252459 31252631 -186784527 + MER97c DNA MER1_type? 238 401 -689 2057 141 13 0 chr3 31252631 31252935 -186784223 + AluSx SINE Alu 1 308 -4 1266 224 95 53 chr3 31252935 31253073 -186784085 + MER97c DNA MER1_type? 401 532 -558 2007 133 3 7 chr3 31253073 31253366 -186783792 - AluSx SINE Alu -12 300 9 1266 224 95 53 chr3 31253366 31253487 -186783671 + MER97c DNA MER1_type? 532 688 -402 261 267 0 44 chr3 31253501 31253591 -186783567 + MER97b DNA MER1_type? 965 1050 -3 1889 162 0 0 chr3 31253735 31254019 -186783139 - AluSx SINE Alu -26 286 3 812 162 14 0 chr3 31254473 31254615 -186782543 - L1MA10 LINE L1 -4 6330 6187 2278 64 0 0 chr3 31256130 31256426 -186780732 - L1PA8 LINE L1 -2 6170 5875 243 252 103 28 chr3 31256564 31256671 -186780487 - MLT1H LTR MaLR -146 403 289 1172 209 26 50 chr3 31256718 31257253 -186779905 - MLT1E2 LTR MaLR -3 623 6 254 277 72 12 chr3 31257371 31257454 -186779704 - MLT1H LTR MaLR -461 88 1 554 245 104 66 chr3 31257669 31257881 -186779277 - MIR SINE MIR 0 262 43 22 35 0 0 chr3 31257886 31257915 -186779243 + AT_rich Low_complexity Low_complexity 1 29 0 1631 243 84 2 chr3 31258378 31258843 -186778315 - MLT1D LTR MaLR 0 505 3 2030 127 43 32 chr3 31258933 31259304 -186777854 + THE1C LTR MaLR 1 375 0 357 267 67 67 chr3 31259447 31259642 -186777516 - L1ME LINE L1 -669 5452 5258 1219 252 105 6 chr3 31259753 31260114 -186777044 - MLT1J2 LTR MaLR -53 397 1 274 154 0 0 chr3 31260701 31260740 -186776418 - AluS SINE Alu -246 57 19 819 117 0 0 chr3 31260740 31260851 -186776307 - AluSq/x SINE Alu -202 111 1 482 227 9 0 chr3 31260940 31261050 -186776108 - MLT2F LTR ERVL -14 649 539 609 273 6 19 chr3 31261129 31261290 -186775868 + MLT1F LTR MaLR 1 159 -383 27 29 0 0 chr3 31261432 31261466 -186775692 + AT_rich Low_complexity Low_complexity 1 34 0 2405 66 10 10 chr3 31261512 31261817 -186775341 + AluY SINE Alu 1 305 -6 21 0 0 0 chr3 31261976 31261997 -186775161 + AT_rich Low_complexity Low_complexity 1 21 0 314 316 62 63 chr3 31262095 31262735 -186774423 - L1ME LINE L1 -1497 4649 4010 1613 147 96 34 chr3 31262735 31263088 -186774070 + THE1C LTR MaLR 1 375 0 314 316 62 63 chr3 31263088 31263305 -186773853 - L1ME LINE L1 -2136 4010 3791 1775 166 0 17 chr3 31263305 31263595 -186773563 - AluJb SINE Alu -22 290 6 314 316 62 63 chr3 31263595 31263655 -186773503 - L1ME LINE L1 -2355 3791 3732 342 250 39 0 chr3 31263855 31263959 -186773199 - Charlie1 DNA MER1_type -5 2756 2649 263 287 37 37 chr3 31263959 31264123 -186773035 - L1ME LINE L1 -3344 2802 2639 415 310 34 25 chr3 31265636 31265959 -186771199 + L1ME3A LINE L1 5034 5359 -787 631 151 43 50 chr3 31266085 31266224 -186770934 + L1MB3 LINE L1 6042 6179 -4 604 252 128 46 chr3 31266243 31266369 -186770789 + L1ME3A LINE L1 5368 5482 -688 2260 116 3 0 chr3 31266369 31266679 -186770479 + AluSp SINE Alu 1 311 -2 604 252 128 46 chr3 31266679 31266834 -186770324 + L1ME3A LINE L1 5482 5672 -498 258 227 0 0 chr3 31266879 31266954 -186770204 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 779 215 185 39 chr3 31267002 31267332 -186769826 + L1ME3A LINE L1 5675 6052 -118 561 303 23 36 chr3 31267353 31267574 -186769584 - LTR16C LTR ERVL 0 491 274 200 122 0 24 chr3 31267598 31267639 -186769519 + (GGA)n Simple_repeat Simple_repeat 1 40 0 272 277 125 0 chr3 31267817 31267929 -186769229 + L1ME3A LINE L1 6040 6165 -5 285 405 47 7 chr3 31268231 31268379 -186768779 - L2 LINE L2 -4 3268 3115 1625 171 3 35 chr3 31268408 31268694 -186768464 + AluJb SINE Alu 3 279 -33 186 143 0 0 chr3 31268694 31268729 -186768429 + (GGGAA)n Simple_repeat Simple_repeat 1 35 0 221 340 78 70 chr3 31268865 31269236 -186767922 - L2 LINE L2 -352 2962 2589 228 35 0 0 chr3 31269550 31269579 -186767579 + (CA)n Simple_repeat Simple_repeat 2 30 0 7430 32 1 4 chr3 31269898 31270950 -186766208 + L1PA4 LINE L1 5106 6154 -1 507 225 18 9 chr3 31271002 31271113 -186766045 - L2 LINE L2 -7 3306 3195 587 341 149 10 chr3 31271147 31271630 -186765528 + L2 LINE L2 2698 3261 -11 348 280 72 0 chr3 31272865 31272990 -186764168 + MIR3 SINE MIR 61 194 -14 350 266 24 77 chr3 31274407 31274576 -186762582 + L2 LINE L2 3094 3253 -60 2748 173 60 17 chr3 31275201 31275892 -186761266 + L1MB3 LINE L1 5122 5840 -343 244 284 30 76 chr3 31275914 31276111 -186761047 - L1ME LINE L1 -335 5786 5599 1360 326 118 44 chr3 31276869 31277483 -186759675 - L2 LINE L2 -243 3070 2503 12882 135 53 52 chr3 31277483 31279610 -186757548 + Tigger1 DNA MER2_type 1 2134 -284 215 31 31 0 chr3 31279610 31279642 -186757516 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 12882 135 53 52 chr3 31279642 31279928 -186757230 + Tigger1 DNA MER2_type 2134 2418 0 1360 326 118 44 chr3 31279928 31280577 -186756581 - L2 LINE L2 -810 2503 1706 814 229 55 27 chr3 31280601 31280784 -186756374 - MER5A DNA MER1_type 0 189 2 297 351 99 0 chr3 31280791 31280962 -186756196 - L2 LINE L2 -1635 1679 1492 394 297 103 26 chr3 31282118 31282273 -186754885 + MLT1I LTR MaLR 47 213 -196 611 204 171 7 chr3 31284011 31284163 -186752995 + MER5A DNA MER1_type 12 188 -1 244 143 0 0 chr3 31284325 31284360 -186752798 - tRNA-Gly-GGG tRNA tRNA -38 36 2 281 253 27 13 chr3 31284569 31284644 -186752514 - L2 LINE L2 0 3272 3197 21 0 0 0 chr3 31285237 31285258 -186751900 + AT_rich Low_complexity Low_complexity 1 21 0 377 311 28 0 chr3 31285273 31285379 -186751779 - MIR SINE MIR -122 140 32 24 53 0 0 chr3 31285434 31285472 -186751686 + AT_rich Low_complexity Low_complexity 1 38 0 273 261 122 9 chr3 31285637 31285752 -186751406 - L2 LINE L2 0 3272 3145 305 250 0 0 chr3 31285756 31285824 -186751334 + MER58 DNA MER1_type 2352 2419 -1 435 259 222 0 chr3 31285825 31285960 -186751198 - L2 LINE L2 -1026 2288 2124 271 383 57 5 chr3 31285979 31286172 -186750986 + MIR SINE MIR 12 214 -48 796 264 71 17 chr3 31286190 31286429 -186750729 + MIR SINE MIR 11 262 0 201 359 41 74 chr3 31287232 31287502 -186749656 + L2 LINE L2 2967 3227 -45 17441 182 28 34 chr3 31287547 31287912 -186749246 + L1MA2 LINE L1 16 382 -7183 1744 92 8 0 chr3 31287912 31288152 -186749006 - L1PA7 LINE L1 -3 6151 5910 17441 182 28 34 chr3 31288152 31291176 -186745982 + L1MA2 LINE L1 382 3423 -4142 186 43 0 0 chr3 31291176 31291199 -186745959 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 17441 182 28 34 chr3 31291199 31291758 -186745400 + L1MA2 LINE L1 3423 3984 -3581 462 101 0 0 chr3 31291758 31291827 -186745331 + (TA)n Simple_repeat Simple_repeat 1 69 0 17441 182 28 34 chr3 31291827 31294279 -186742879 + L1MA2 LINE L1 3984 6381 -1184 2801 125 15 5 chr3 31294279 31294688 -186742470 + MLT2A2 LTR ERVL 1 413 -40 313 283 0 22 chr3 31294723 31294815 -186742343 - L1MC4 LINE L1 -1339 6703 6614 238 222 22 0 chr3 31294817 31294907 -186742251 + (TA)n Simple_repeat Simple_repeat 2 93 0 3995 117 33 3 chr3 31294909 31295516 -186741642 + HERVL-A2 LTR ERVL 1640 2264 -3390 587 40 0 0 chr3 31295518 31295593 -186741565 + HERVL-A2 LTR ERVL 5580 5654 0 1877 105 50 4 chr3 31295593 31295930 -186741228 + MLT2A2 LTR ERVL 1 321 -132 540 0 0 0 chr3 31295930 31295990 -186741168 + (TA)n Simple_repeat Simple_repeat 1 60 0 198 0 0 0 chr3 31295989 31296011 -186741147 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 1877 105 50 4 chr3 31295990 31296051 -186741107 + MLT2A2 LTR ERVL 321 453 0 1558 201 0 21 chr3 31296053 31296432 -186740726 + L1MA2 LINE L1 6379 6749 -816 2844 119 119 31 chr3 31296434 31296732 -186740426 + L1PB2 LINE L1 5585 5855 -296 2251 143 12 6 chr3 31296732 31297067 -186740091 - MER1B DNA MER1_type 0 337 1 2844 119 119 31 chr3 31297067 31297289 -186739869 + L1PB2 LINE L1 5855 6151 0 6117 113 20 6 chr3 31297302 31297331 -186739827 + L1MA2 LINE L1 6744 6771 -952 1471 135 0 9 chr3 31297331 31297546 -186739612 - AluSg/x SINE Alu -15 295 83 6117 113 20 6 chr3 31297546 31298483 -186738675 + L1MA2 LINE L1 6771 7723 0 2175 77 3 3 chr3 31299220 31299518 -186737640 + L1PA6 LINE L1 5857 6154 0 473 330 92 37 chr3 31301051 31301493 -186735665 + L1ME LINE L1 5293 5762 -400 405 281 176 6 chr3 31301819 31302076 -186735082 - L1MC/D LINE L1 -760 5386 5186 982 235 50 4 chr3 31302118 31302378 -186734780 + L1ME3A LINE L1 5527 5798 -372 717 288 34 48 chr3 31302490 31302844 -186734314 + L1ME3A LINE L1 5818 6166 -4 24 53 0 0 chr3 31303045 31303083 -186734075 + AT_rich Low_complexity Low_complexity 1 38 0 1457 194 68 21 chr3 31303461 31303801 -186733357 - MLT1A1 LTR MaLR 0 365 10 198 143 0 0 chr3 31305696 31305731 -186731427 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 224 20 0 chr3 31305737 31305786 -186731372 - MIR SINE MIR -25 237 188 6855 71 14 0 chr3 31306159 31307195 -186729963 - L1PA7 LINE L1 0 6154 5116 4501 138 72 4 chr3 31307617 31308384 -186728774 + L1PA16 LINE L1 5340 6158 -8 839 199 30 6 chr3 31308497 31308663 -186728495 + MER3 DNA MER1_type 1 123 -86 381 43 0 0 chr3 31308850 31308897 -186728261 + (TA)n Simple_repeat Simple_repeat 2 48 0 31 0 0 0 chr3 31308957 31308988 -186728170 + AT_rich Low_complexity Low_complexity 1 31 0 1028 187 112 22 chr3 31309067 31309334 -186727824 - L1MB8 LINE L1 0 6178 5888 2429 53 0 10 chr3 31309347 31309648 -186727510 - AluY SINE Alu -13 298 1 22 70 0 0 chr3 31309766 31309809 -186727349 + AT_rich Low_complexity Low_complexity 1 43 0 6939 36 4 1 chr3 31310814 31311657 -186725501 + L1PA5 LINE L1 5309 6153 -1 570 228 0 0 chr3 31311779 31311902 -186725256 + L1MB5 LINE L1 6038 6160 -14 483 268 88 35 chr3 31312895 31313156 -186724002 + MLT1L LTR MaLR 119 393 -222 913 310 113 20 chr3 31313193 31313583 -186723575 - LTR16A LTR ERVL -22 428 3 503 312 90 0 chr3 31313591 31313780 -186723378 + MLT1L LTR MaLR 410 615 0 501 311 15 0 chr3 31314198 31314330 -186722828 + MIR3 SINE MIR 72 205 -3 1544 240 31 9 chr3 31314892 31315313 -186721845 + L1ME3 LINE L1 5338 5767 -397 1371 238 12 19 chr3 31315318 31315638 -186721520 + L1ME3 LINE L1 5845 6162 0 516 276 48 0 chr3 31315899 31316044 -186721114 - MIR SINE MIR -74 188 37 491 31 15 0 chr3 31316346 31316411 -186720747 + (CA)n Simple_repeat Simple_repeat 1 66 0 26 0 0 0 chr3 31316723 31316749 -186720409 + AT_rich Low_complexity Low_complexity 1 26 0 1281 183 25 108 chr3 31317096 31317494 -186719664 - MLT1A1 LTR MaLR 0 365 1 191 273 45 0 chr3 31317679 31317745 -186719413 + MIR SINE MIR 66 134 -128 2373 91 39 35 chr3 31317790 31318196 -186718962 + L1MA3 LINE L1 5896 6303 -2 242 296 23 0 chr3 31318797 31318885 -186718273 - L1MC4 LINE L1 -1339 6703 6614 476 287 0 6 chr3 31318994 31319175 -186717983 + (TA)n Simple_repeat Simple_repeat 1 180 0 256 217 22 43 chr3 31319214 31319306 -186717852 - L1MC4 LINE L1 -1339 6703 6614 254 303 0 0 chr3 31319327 31319416 -186717742 + L1MC4 LINE L1 6615 6703 -1339 * 255 294 0 0 chr3 31319350 31319435 -186717723 - L1MC4 LINE L1 -1339 6703 6619 309 169 22 11 chr3 31321074 31321163 -186715995 + (TA)n Simple_repeat Simple_repeat 1 90 0 207 0 0 0 chr3 31321276 31321299 -186715859 + (T)n Simple_repeat Simple_repeat 1 23 0 1840 161 27 21 chr3 31321572 31321945 -186715213 + THE1C LTR MaLR 1 375 0 298 244 72 54 chr3 31322000 31322135 -186715023 + MLT1I LTR MaLR 35 182 -285 183 339 119 0 chr3 31323240 31323358 -186713800 - MIR3 SINE MIR -7 201 70 361 251 46 109 chr3 31323711 31323950 -186713208 + L1ME4a LINE L1 5632 5855 -266 1945 169 0 10 chr3 31324073 31324386 -186712772 - AluJb SINE Alu -2 310 1 2525 58 0 0 chr3 31324595 31324905 -186712253 + AluY SINE Alu 1 310 -1 1989 195 35 53 chr3 31325068 31325580 -186711578 + MLT1D LTR MaLR 3 505 0 1935 99 22 4 chr3 31325985 31326258 -186710900 + AluSx SINE Alu 1 278 -34 2148 97 3 17 chr3 31326998 31327323 -186709835 - AluSx SINE Alu 0 312 1 1554 185 37 85 chr3 31327446 31327927 -186709231 - LTR37B LTR ERV1 -5 463 6 258 222 194 0 chr3 31328258 31328330 -186708828 - MIR SINE MIR -69 193 108 27 0 0 0 chr3 31328757 31328784 -186708374 + AT_rich Low_complexity Low_complexity 1 27 0 415 369 98 19 chr3 31329116 31329485 -186707673 + L2 LINE L2 2871 3268 -4 364 338 153 0 chr3 31330999 31331156 -186706002 - MER5A DNA MER1_type 0 189 9 556 206 94 25 chr3 31333208 31333368 -186703790 - MLT1D LTR MaLR -327 178 8 24 32 0 0 chr3 31333906 31333937 -186703221 + AT_rich Low_complexity Low_complexity 1 31 0 273 195 0 49 chr3 31334230 31334312 -186702846 - MLT2F LTR ERVL -2 661 584 269 263 38 12 chr3 31334479 31334559 -186702599 + MIR SINE MIR 49 130 -132 1011 221 46 36 chr3 31334577 31334884 -186702274 - MLT2C1 LTR ERVL -87 310 1 308 253 101 10 chr3 31336466 31336565 -186700593 + MLT1I LTR MaLR 281 388 -21 694 241 208 45 chr3 31336906 31337008 -186700150 + MLT1G LTR MaLR 43 127 -463 1783 193 0 3 chr3 31337008 31337314 -186699844 + AluJb SINE Alu 1 305 -7 694 241 208 45 chr3 31337314 31337660 -186699498 + MLT1G LTR MaLR 127 588 -2 592 246 43 7 chr3 31337807 31337918 -186699240 + Tigger5 DNA MER2_type 32 150 -2173 276 30 0 0 chr3 31337918 31337951 -186699207 + (TC)n Simple_repeat Simple_repeat 1 33 0 592 246 43 7 chr3 31337951 31337977 -186699181 + Tigger5 DNA MER2_type 150 174 -2149 429 219 118 17 chr3 31338001 31338120 -186699038 + MER21B LTR ERV1 368 498 -365 1461 128 0 9 chr3 31338121 31338347 -186698811 + Tigger5 DNA MER2_type 2098 2321 -2 421 326 28 7 chr3 31338349 31338493 -186698665 - MIR SINE MIR -101 161 15 1310 186 71 59 chr3 31339281 31339673 -186697485 + L1MC4 LINE L1 7505 7901 -141 269 327 83 16 chr3 31339672 31339926 -186697232 - L1M4 LINE L1 -1143 5003 4733 * 355 245 24 4 chr3 31339976 31340228 -186696930 + (TA)n Simple_repeat Simple_repeat 1 257 0 305 295 120 83 chr3 31340239 31340502 -186696656 - L1M4 LINE L1 -2792 3354 3102 5234 45 6 3 chr3 31340502 31341146 -186696012 + L1PA7 LINE L1 5507 6152 -2 305 295 120 83 chr3 31341146 31341884 -186695274 - L1M4 LINE L1 -3044 3102 2316 4237 167 27 1 chr3 31342336 31343035 -186694123 - MER44D DNA MER2_type -16 589 1 21 0 0 0 chr3 31343437 31343458 -186693700 + AT_rich Low_complexity Low_complexity 1 21 0 441 345 48 33 chr3 31343463 31343799 -186693359 - HAL1 LINE L1 -878 1629 1289 233 254 0 16 chr3 31346041 31346104 -186691054 + MIR SINE MIR 200 261 -1 242 132 19 0 chr3 31346143 31346196 -186690962 + GA-rich Low_complexity Low_complexity 4 57 0 228 167 0 0 chr3 31346686 31346734 -186690424 + GA-rich Low_complexity Low_complexity 1 48 0 243 157 0 0 chr3 31346941 31346992 -186690166 + (TAA)n Simple_repeat Simple_repeat 3 53 0 438 298 21 21 chr3 31347087 31347228 -186689930 - MIR SINE MIR -116 146 6 375 287 17 29 chr3 31348013 31348187 -186688971 + GA-rich Low_complexity Low_complexity 3 174 0 1105 63 0 0 chr3 31348780 31348922 -186688236 - AluY SINE Alu -1 310 169 282 178 55 41 chr3 31349366 31349439 -186687719 - MIR SINE MIR -98 164 91 183 306 0 20 chr3 31349593 31349642 -186687516 - L2 LINE L2 -211 3061 3014 1794 127 102 0 chr3 31349734 31350017 -186687141 + AluSx SINE Alu 1 312 0 584 282 66 11 chr3 31350575 31350848 -186686310 + AluSq SINE Alu 21 308 -5 330 275 183 0 chr3 31351720 31351851 -186685307 - MLT2E LTR ERVL -5 623 469 460 298 151 24 chr3 31351961 31352213 -186684945 - MLT2E LTR ERVL -310 318 35 869 260 9 22 chr3 31352235 31352458 -186684700 + MER58A DNA MER1_type 2 221 -3 196 298 18 0 chr3 31352552 31352609 -186684549 + L2 LINE L2 3207 3264 -8 508 344 13 0 chr3 31352876 31353033 -186684125 - L2 LINE L2 -261 3052 2894 10345 129 31 19 chr3 31353246 31355812 -186681346 - L1PA10 LINE L1 -3 6480 3891 12242 203 11 29 chr3 31355812 31358811 -186678347 - L1PA10 LINE L1 -2790 3671 714 225 0 0 0 chr3 31358811 31358836 -186678322 + (CTGTG)n Simple_repeat Simple_repeat 1 25 0 12242 203 11 29 chr3 31358836 31358935 -186678223 - L1PA10 LINE L1 -5747 714 615 828 290 34 0 chr3 31359697 31359939 -186677219 - MIR SINE MIR -6 256 8 713 249 103 33 chr3 31360251 31360552 -186676606 - L1ME4a LINE L1 -252 5869 5548 459 282 42 7 chr3 31361006 31361148 -186676010 - Charlie8 DNA MER1_type -2186 231 85 1273 218 24 85 chr3 31362247 31362669 -186674489 - MSTD LTR MaLR 0 396 1 201 268 175 0 chr3 31363434 31363531 -186673627 + L2 LINE L2 2576 2689 -625 2941 176 95 3 chr3 31363545 31364175 -186672983 - L1MB5 LINE L1 -1 6173 5486 754 327 55 3 chr3 31364180 31364540 -186672618 + L2 LINE L2 2683 3066 -247 3727 154 22 29 chr3 31364922 31365649 -186671509 - L1MB2 LINE L1 0 6171 5450 497 268 70 47 chr3 31365971 31366184 -186670974 + L2 LINE L2 3091 3308 -5 204 188 0 0 chr3 31366328 31366392 -186670766 + (TA)n Simple_repeat Simple_repeat 2 65 0 186 279 72 81 chr3 31366434 31366545 -186670613 + L2 LINE L2 3146 3255 -58 1610 162 1 2 chr3 31366566 31367041 -186670117 - L1P5 LINE L1 -646 5505 5031 3244 93 32 2 chr3 31367046 31367517 -186669641 - L1PA13 LINE L1 -4 6159 5675 1605 50 0 0 chr3 31367533 31367733 -186669425 - L1PA4 LINE L1 0 6155 5956 2450 81 52 8 chr3 31367734 31368115 -186669043 - L1PA13 LINE L1 -499 5664 5267 * 5925 78 6 6 chr3 31368104 31368908 -186668250 - L1PA7 LINE L1 -2 6152 5349 30830 125 15 40 chr3 31369008 31374376 -186662782 - L1PA7 LINE L1 -910 5236 2 3053 211 4 44 chr3 31374371 31375170 -186661988 - L1 LINE L1 -1101 5045 4279 * 7278 142 11 15 chr3 31376082 31378469 -186658689 - L1MA1 LINE L1 0 6302 3928 2490 205 2 0 chr3 31378672 31379188 -186657970 - L1 LINE L1 -819 5327 4811 2133 178 3 18 chr3 31379188 31379531 -186657627 - MER1B DNA MER1_type 0 339 2 773 150 0 0 chr3 31379531 31379664 -186657494 - L1 LINE L1 -1328 4818 4686 644 177 0 0 chr3 31379651 31379775 -186657383 - L1 LINE L1 -2180 3966 3843 * 1919 228 6 29 chr3 31379864 31380377 -186656781 - L1 LINE L1 -2275 3871 3371 6023 171 31 1 chr3 31380394 31380814 -186656344 + L1PB1 LINE L1 3970 4376 -1804 234 0 0 0 chr3 31380814 31380840 -186656318 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 6023 171 31 1 chr3 31380840 31382188 -186654970 + L1PB1 LINE L1 4376 5811 -369 180 77 0 0 chr3 31382188 31382214 -186654944 + (TA)n Simple_repeat Simple_repeat 2 27 0 6023 171 31 1 chr3 31382214 31382596 -186654562 + L1PB1 LINE L1 5811 6180 0 15073 175 32 5 chr3 31382596 31384775 -186652383 - L1 LINE L1 -1436 6129 4011 2291 119 31 19 chr3 31384775 31385135 -186652023 - THE1B LTR MaLR 0 364 1 15073 175 32 5 chr3 31385135 31388011 -186649147 - L1 LINE L1 -3554 4011 943 1227 236 43 28 chr3 31388011 31388337 -186648821 + MLT1C LTR MaLR 134 464 -3 5371 239 26 42 chr3 31388339 31390171 -186646987 + L1MC1 LINE L1 2908 4710 -1436 313 192 199 19 chr3 31390271 31390427 -186646731 + L1ME1 LINE L1 1645 1828 -4712 1755 226 53 24 chr3 31390433 31390924 -186646234 - MLT1D LTR MaLR 0 505 1 5319 170 52 4 chr3 31390963 31392060 -186645098 + L1MC1 LINE L1 5186 6333 0 276 200 31 0 chr3 31392054 31392119 -186645039 + L1ME1 LINE L1 1861 1927 -4613 * 837 260 44 12 chr3 31392102 31392421 -186644737 + L1ME1 LINE L1 4541 4869 -1671 3063 235 69 10 chr3 31392426 31393877 -186643281 + L1ME1 LINE L1 5009 6541 -19 2272 83 0 3 chr3 31394006 31394295 -186642863 - AluSg1 SINE Alu -21 288 1 194 312 73 83 chr3 31394327 31394410 -186642748 + L2 LINE L2 2692 2774 -540 329 93 19 0 chr3 31394410 31394464 -186642694 + (CA)n Simple_repeat Simple_repeat 2 56 0 194 312 73 83 chr3 31394464 31394598 -186642560 + L2 LINE L2 2774 2907 -407 198 0 0 0 chr3 31394643 31394665 -186642493 + (T)n Simple_repeat Simple_repeat 1 22 0 247 261 207 27 chr3 31394753 31394864 -186642294 + L2 LINE L2 3183 3313 0 985 196 168 9 chr3 31395017 31395445 -186641713 - Charlie1 DNA MER1_type 0 2761 1 343 259 69 52 chr3 31395694 31395868 -186641290 + MER5B DNA MER1_type 2 178 0 834 220 12 6 chr3 31396104 31396277 -186640881 + MER45A DNA AcHobo 1 174 -4 470 282 82 18 chr3 31396757 31396927 -186640231 - LTR33 LTR ERVL -315 206 26 995 354 22 22 chr3 31397251 31397743 -186639415 - ERVL LTR ERVL -522 5242 4751 282 284 0 0 chr3 31397749 31397823 -186639335 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 432 184 71 158 chr3 31398697 31399159 -186637999 - L1MC5 LINE L1 -62 7899 7478 516 221 16 16 chr3 31399165 31399292 -186637866 - L1MA4 LINE L1 -39 6261 6135 823 243 104 47 chr3 31399313 31399716 -186637442 - L1MC5 LINE L1 -465 7496 7071 588 297 53 42 chr3 31399728 31399991 -186637167 - L1MC4a LINE L1 -1068 6740 6475 438 250 52 0 chr3 31400011 31400147 -186637011 + LTR67 LTR ERVL 408 550 -7 214 338 14 0 chr3 31401331 31401405 -186635753 - L2 LINE L2 -8 3305 3231 4027 134 16 9 chr3 31402908 31403577 -186633581 + L1MC1 LINE L1 5659 6332 -1 1311 122 81 0 chr3 31403615 31403836 -186633322 + MSTA LTR MaLR 2 240 -188 358 171 0 49 chr3 31403834 31403916 -186633242 + AluJb SINE Alu 57 134 -168 * 21470 153 29 16 chr3 31403929 31405278 -186631880 - L1 LINE L1 -3484 4081 2752 186 43 0 0 chr3 31405278 31405301 -186631857 + (TC)n Simple_repeat Simple_repeat 2 24 0 21470 153 29 16 chr3 31405301 31407962 -186629196 - L1 LINE L1 -4813 2752 19 295 310 88 32 chr3 31409368 31409584 -186627574 - MER102b DNA MER1_type -28 313 86 218 322 33 22 chr3 31410120 31410210 -186626948 + MER5A DNA MER1_type 77 167 -22 * 290 279 13 13 chr3 31410139 31410218 -186626940 - MER5A DNA MER1_type -85 104 26 24 32 0 0 chr3 31410689 31410720 -186626438 + AT_rich Low_complexity Low_complexity 1 31 0 3613 263 40 57 chr3 31410884 31412400 -186624758 - L2 LINE L2 0 3313 1826 315 341 46 17 chr3 31413396 31413569 -186623589 - MIR SINE MIR -20 242 65 366 299 119 55 chr3 31413876 31414261 -186622897 + L2 LINE L2 98 507 -2807 301 355 9 0 chr3 31414392 31414499 -186622659 + L2 LINE L2 550 657 -2657 1290 203 126 54 chr3 31415644 31415993 -186621165 - MLT1B LTR MaLR -16 374 1 1005 173 23 45 chr3 31416164 31416384 -186620774 + MER20 DNA MER1_type 4 218 -1 382 327 149 30 chr3 31416431 31416767 -186620391 + L2 LINE L2 2236 2611 -703 333 234 43 0 chr3 31416943 31416984 -186620174 + MER94 DNA DNA 9 47 -87 438 79 0 0 chr3 31416984 31417047 -186620111 + (TG)n Simple_repeat Simple_repeat 1 63 0 333 234 43 0 chr3 31417047 31417099 -186620059 + MER94 DNA DNA 47 106 -28 3872 126 62 16 chr3 31417334 31418017 -186619141 + L1MA2 LINE L1 5546 6259 -45 15469 36 1 0 chr3 31418017 31420653 -186616505 + L1PA3 LINE L1 3516 6155 0 189 0 0 0 chr3 31420659 31420680 -186616478 + (CA)n Simple_repeat Simple_repeat 2 22 0 1389 74 0 0 chr3 31420681 31420857 -186616301 + MER1A DNA MER1_type 252 427 -102 263 140 18 0 chr3 31420876 31420933 -186616225 + L1MA3 LINE L1 6246 6303 -2 335 132 0 0 chr3 31421625 31421678 -186615480 - MLT2B1 LTR ERVL -3 517 465 2351 191 4 43 chr3 31421758 31422225 -186614933 - MLT2B1 LTR ERVL -71 449 1 31 26 0 0 chr3 31423899 31423937 -186613221 + AT_rich Low_complexity Low_complexity 1 38 0 5274 128 41 6 chr3 31424287 31425236 -186611922 - L1PB3 LINE L1 -7 6147 5164 2336 222 63 3 chr3 31425237 31425805 -186611353 - MER97a DNA MER1_type? -46 848 247 2537 291 20 11 chr3 31425815 31426659 -186610499 + L1MEc LINE L1 37 888 -5508 1915 157 0 0 chr3 31426660 31426941 -186610217 + AluJo SINE Alu 1 281 -31 212 0 36 0 chr3 31426946 31426974 -186610184 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1148 280 9 26 chr3 31426979 31427322 -186609836 - L1M4 LINE L1 -5515 1027 691 323 300 0 22 chr3 31427323 31427413 -186609745 - L1MEc LINE L1 -4608 1788 1701 267 31 0 0 chr3 31427482 31427514 -186609644 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 270 0 0 0 chr3 31427513 31427543 -186609615 + (GA)n Simple_repeat Simple_repeat 2 31 0 1977 115 4 0 chr3 31427543 31427813 -186609345 - AluSx SINE Alu -39 273 3 1934 150 7 3 chr3 31427831 31428138 -186609020 + AluSx SINE Alu 1 308 -4 336 308 15 15 chr3 31428445 31428578 -186608580 + C-rich Low_complexity Low_complexity 1 133 0 1314 256 75 10 chr3 31428757 31429288 -186607870 + L1MB7 LINE L1 1210 1772 -4833 749 210 6 6 chr3 31429279 31429455 -186607703 + L1MB7 LINE L1 2874 3049 -3595 * 2275 213 106 67 chr3 31429452 31430930 -186606228 + L1MEc LINE L1 930 3556 -2659 2202 244 75 11 chr3 31430948 31431705 -186605453 + L1MEc LINE L1 4227 5032 -1183 324 183 0 14 chr3 31431722 31431793 -186605365 + L1MEc LINE L1 5157 5226 -989 1863 252 35 13 chr3 31431990 31432609 -186604549 + L1MB7 LINE L1 4832 5464 -1180 3788 205 38 37 chr3 31432623 31433565 -186603593 + L1MB7 LINE L1 5586 6525 -157 985 190 57 0 chr3 31433565 31433776 -186603382 + L1MA9 LINE L1 6085 6307 -5 3788 205 38 37 chr3 31433776 31433912 -186603246 + L1MB7 LINE L1 6525 6659 -23 362 271 114 12 chr3 31434067 31434322 -186602836 + L1M4 LINE L1 3439 3719 -2427 1541 208 41 36 chr3 31434331 31434750 -186602408 - LTR52 LTR ERVL 0 421 1 741 299 103 30 chr3 31434886 31436035 -186601123 + L1M4 LINE L1 3774 5026 -1120 619 301 29 6 chr3 31436114 31436287 -186600871 - LTR16A LTR ERVL -242 208 32 21 36 0 0 chr3 31438198 31438226 -186598932 + AT_rich Low_complexity Low_complexity 1 28 0 5172 154 31 2 chr3 31438574 31439444 -186597714 - L1P LINE L1 -5240 906 12 230 189 0 0 chr3 31439493 31439530 -186597628 - MER6 DNA MER2_type -12 853 817 9862 83 23 30 chr3 31439727 31441227 -186595931 + L1P LINE L1 893 2381 -3765 593 88 0 0 chr3 31441328 31441408 -186595750 + AluY SINE Alu 214 293 -18 826 145 0 0 chr3 31441409 31441526 -186595632 - AluJo/FLAM SINE Alu -185 117 1 384 218 145 8 chr3 31441534 31441658 -186595500 + L1MDa LINE L1 1798 1938 -4602 2093 77 4 0 chr3 31441663 31441924 -186595234 + AluY SINE Alu 6 267 -44 22894 73 3 2 chr3 31442172 31446054 -186591104 + L1PA6 LINE L1 2250 6145 -9 603 310 17 6 chr3 31446453 31446627 -186590531 + LTR16A LTR ERVL 32 207 -243 2855 155 63 15 chr3 31446970 31447493 -186589665 + MER44D DNA MER2_type 1 603 -2 948 201 11 0 chr3 31448013 31448197 -186588961 - MER5A DNA MER1_type 0 189 4 218 281 125 10 chr3 31448453 31448549 -186588609 + L2 LINE L2 2387 2493 -821 23 54 0 0 chr3 31449070 31449107 -186588051 + AT_rich Low_complexity Low_complexity 1 37 0 462 234 97 77 chr3 31449607 31449855 -186587303 + MER112 DNA MER1_type 1 253 -3 478 240 74 8 chr3 31450427 31450548 -186586610 - L2 LINE L2 0 3313 3185 370 194 0 0 chr3 31451032 31451104 -186586054 - HAL1b LINE L1 -742 606 535 * 2916 59 4 3 chr3 31451097 31451621 -186585537 - L1P2 LINE L1 -630 5524 5000 4240 53 4 0 chr3 31451621 31452163 -186584995 + L1P2 LINE L1 4435 4978 -1168 603 211 54 12 chr3 31452863 31453029 -186584129 - L1MA10 LINE L1 -1 6333 6161 431 149 0 0 chr3 31453038 31453105 -186584053 + L1MA7 LINE L1 5831 5897 -394 2637 43 3 0 chr3 31454930 31455235 -186581923 - AluY SINE Alu -5 306 1 212 298 95 0 chr3 31455350 31455434 -186581724 - L3 LINE CR1 -119 1458 1367 401 209 29 38 chr3 31455738 31455843 -186581315 + MIR SINE MIR 141 244 -18 913 197 36 0 chr3 31456214 31456407 -186580751 - MER3 DNA MER1_type -8 201 2 203 330 143 9 chr3 31456815 31456927 -186580231 + MIR SINE MIR 82 208 -54 187 301 97 11 chr3 31457029 31457122 -186580036 + L3 LINE CR1 1379 1479 -98 27 0 0 0 chr3 31457870 31457897 -186579261 + AT_rich Low_complexity Low_complexity 1 27 0 199 228 22 0 chr3 31458424 31458516 -186578642 + (TCCA)n Simple_repeat Simple_repeat 4 97 0 536 342 64 40 chr3 31459297 31459815 -186577343 + L2 LINE L2 2347 2876 -438 312 350 56 56 chr3 31460443 31460766 -186576392 + L2 LINE L2 2941 3263 -9 544 206 3 31 chr3 31462331 31462458 -186574700 + MER5A DNA MER1_type 1 114 -64 1288 104 0 16 chr3 31462529 31462712 -186574446 + AluSg/x SINE Alu 132 311 -1 352 344 62 33 chr3 31463704 31463945 -186573213 + L2 LINE L2 2565 2812 -502 414 276 128 68 chr3 31463973 31464339 -186572819 - L2 LINE L2 0 3313 2926 1827 156 113 43 chr3 31464516 31464914 -186572244 - MSTB LTR MaLR 0 426 1 496 272 79 88 chr3 31465080 31465422 -186571736 + MLT1H LTR MaLR 195 533 -16 2793 103 92 2 chr3 31465660 31466106 -186571052 + LTR19A LTR ERV1 1 486 0 26 30 0 0 chr3 31466124 31466157 -186571001 + AT_rich Low_complexity Low_complexity 1 33 0 238 315 76 11 chr3 31466191 31466283 -186570875 + L2 LINE L2 3163 3260 -12 2055 116 73 14 chr3 31467377 31467731 -186569427 + THE1C LTR MaLR 1 375 0 457 233 203 0 chr3 31468570 31468703 -186568455 + LTR16C LTR ERVL 317 476 -15 1628 156 39 11 chr3 31468816 31469098 -186568060 - AluJo SINE Alu -16 296 7 186 318 0 0 chr3 31470271 31470315 -186566843 + MIR SINE MIR 196 239 -23 218 359 57 0 chr3 31470341 31470447 -186566711 - L2 LINE L2 -224 3048 2937 42130 38 23 1 chr3 31470748 31476767 -186560391 - L1PA3 LINE L1 0 6155 4 2015 63 4 4 chr3 31477812 31478065 -186559093 - AluY SINE Alu -30 281 29 261 0 0 0 chr3 31478868 31478897 -186558261 + (T)n Simple_repeat Simple_repeat 1 29 0 205 325 124 35 chr3 31479305 31479474 -186557684 - MIR3 SINE MIR -7 201 18 2321 107 3 0 chr3 31480184 31480484 -186556674 - AluSp SINE Alu -11 302 2 674 295 39 47 chr3 31480648 31481007 -186556151 + LTR16A LTR ERVL 7 362 -88 1031 308 79 16 chr3 31481084 31481741 -186555417 - L2 LINE L2 -1 3312 2617 1778 263 71 43 chr3 31482238 31482399 -186554759 + L1M4 LINE L1 3297 3452 -2694 8452 87 15 1 chr3 31482399 31484367 -186552791 - L1PA7 LINE L1 -1 6153 4162 1778 263 71 43 chr3 31484367 31484993 -186552165 + L1M4 LINE L1 3452 4106 -2040 4738 201 81 112 chr3 31485004 31486275 -186550883 + L1MC3 LINE L1 5961 7191 -594 387 256 0 20 chr3 31486275 31486375 -186550783 + MLT1F1 LTR MaLR 35 133 -442 4738 201 81 112 chr3 31486375 31486953 -186550205 + L1MC3 LINE L1 7191 7785 0 403 276 117 54 chr3 31487607 31487846 -186549312 - MIR SINE MIR 0 262 9 7869 171 10 5 chr3 31487913 31487991 -186549167 + L1PB1 LINE L1 3710 3786 -2365 1968 147 0 17 chr3 31487991 31488290 -186548868 + AluSx SINE Alu 1 294 -18 7869 171 10 5 chr3 31488290 31490649 -186546509 + L1PB1 LINE L1 3786 6151 0 221 98 24 0 chr3 31490879 31490920 -186546238 + (TA)n Simple_repeat Simple_repeat 1 42 0 31 26 0 0 chr3 31491233 31491271 -186545887 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr3 31492049 31492096 -186545062 + AT_rich Low_complexity Low_complexity 1 47 0 5778 147 71 35 chr3 31492726 31493914 -186543244 + Tigger3b DNA MER2_type 2 1231 0 186 333 0 28 chr3 31495024 31495096 -186542062 + L2 LINE L2 3232 3301 -12 1069 246 173 43 chr3 31496396 31496795 -186540363 + LTR16B LTR ERVL 1 451 -13 981 268 101 36 chr3 31497172 31497587 -186539571 + MLT1J2 LTR MaLR 1 442 -8 295 277 141 5 chr3 31497968 31498152 -186539006 - MER41B LTR ERV1 -299 336 128 460 248 63 136 chr3 31498226 31498609 -186538549 + MLT1H LTR MaLR 15 369 -221 2658 42 0 0 chr3 31499672 31499981 -186537177 + AluY SINE Alu 1 309 -2 688 274 159 36 chr3 31500534 31501062 -186536096 + MLT1G1 LTR MaLR 1 555 0 555 293 35 47 chr3 31501112 31501344 -186535814 - MIR SINE MIR -13 249 21 23 33 0 0 chr3 31501348 31501378 -186535780 + AT_rich Low_complexity Low_complexity 1 30 0 424 242 11 0 chr3 31502138 31502233 -186534925 - Zaphod DNA AcHobo 0 4031 3936 832 298 110 43 chr3 31502490 31502980 -186534178 + MLT1G1 LTR MaLR 73 595 0 206 337 102 20 chr3 31503030 31503128 -186534030 + MIR SINE MIR 27 132 -130 1649 181 22 0 chr3 31505504 31505824 -186531334 - L1P LINE L1 -1229 4917 4591 5830 110 17 2 chr3 31505825 31507000 -186530158 + L1PA16 LINE L1 4965 6157 -9 31 44 0 0 chr3 31507014 31507059 -186530099 + AT_rich Low_complexity Low_complexity 1 45 0 190 230 150 110 chr3 31507147 31507247 -186529911 + MER5A DNA MER1_type 6 109 -80 1967 128 0 0 chr3 31507793 31508075 -186529083 + AluY SINE Alu 30 311 0 1418 249 129 42 chr3 31508576 31509119 -186528039 - MLT1G LTR MaLR 0 590 1 25 31 0 0 chr3 31509454 31509486 -186527672 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 31510343 31510364 -186526794 + AT_rich Low_complexity Low_complexity 1 21 0 915 221 133 17 chr3 31510750 31510990 -186526168 - L1PA16 LINE L1 -3 6163 5896 301 301 0 0 chr3 31511426 31511509 -186525649 - L1MC4 LINE L1 -1340 6702 6620 352 263 54 71 chr3 31512538 31512762 -186524396 + L1MCa LINE L1 16 235 -6307 1688 240 38 45 chr3 31512939 31513818 -186523340 + L1M4 LINE L1 497 1348 -5198 1018 222 183 22 chr3 31513839 31514254 -186522904 + L1MCa LINE L1 261 742 -5902 1992 148 56 6 chr3 31514254 31514593 -186522565 - MER47A DNA MER2_type 0 366 11 2008 137 57 17 chr3 31514593 31514943 -186522215 - THE1B LTR MaLR 0 364 1 11465 91 15 5 chr3 31514943 31516507 -186520651 - THE1B-int LTR MaLR 0 1580 1 2251 107 51 28 chr3 31516507 31516863 -186520295 - THE1B LTR MaLR 0 364 1 2838 203 37 39 chr3 31516877 31517750 -186519408 + L1MCb LINE L1 470 1341 -4849 * 2965 245 80 17 chr3 31517737 31519667 -186517491 + L1MCb LINE L1 1608 3540 -3024 1480 219 12 3 chr3 31519714 31520057 -186517101 + L1PA16 LINE L1 5804 6149 -17 22 0 0 0 chr3 31520057 31520079 -186517079 + AT_rich Low_complexity Low_complexity 1 22 0 1484 207 63 107 chr3 31520104 31520711 -186516447 + L1MC4 LINE L1 7474 7995 0 6888 228 40 38 chr3 31520721 31522019 -186515139 + L1MB8 LINE L1 3564 4866 -1736 2001 122 32 102 chr3 31522019 31522422 -186514736 + THE1C LTR MaLR 1 375 0 6888 228 40 38 chr3 31522422 31523582 -186513576 + L1MB8 LINE L1 4866 6022 -580 1655 107 8 0 chr3 31523582 31523824 -186513334 - L1MA4 LINE L1 -424 5876 5633 2220 172 16 5 chr3 31523824 31524249 -186512909 + L1MA4 LINE L1 5870 6299 -1 1338 282 117 8 chr3 31524266 31524795 -186512363 + L1MB8 LINE L1 6010 6596 0 315 340 75 37 chr3 31524920 31525403 -186511755 + L2 LINE L2 1490 1990 -1324 360 353 20 25 chr3 31526086 31526287 -186510871 + L2 LINE L2 2302 2501 -813 203 152 0 0 chr3 31526348 31526381 -186510777 + (TG)n Simple_repeat Simple_repeat 2 34 0 327 330 94 0 chr3 31527293 31527484 -186509674 + MIR SINE MIR 8 216 -46 344 242 0 0 chr3 31527545 31527611 -186509547 + MIR SINE MIR 197 262 0 1941 141 29 35 chr3 31528376 31528753 -186508405 + THE1C LTR MaLR 1 375 0 595 317 96 12 chr3 31531958 31532302 -186504856 + LTR16C LTR ERVL 115 487 -4 342 267 11 11 chr3 31534094 31534184 -186502974 - L2 LINE L2 -24 3289 3200 432 213 115 0 chr3 31534230 31534352 -186502806 - MIR SINE MIR -25 237 102 42493 34 23 2 chr3 31534392 31540417 -186496741 + L1PA2 LINE L1 3 6155 0 228 91 0 0 chr3 31540557 31540590 -186496568 - MLT2F LTR ERVL 0 663 631 604 258 5 16 chr3 31540677 31540885 -186496273 - MLT2F LTR ERVL -405 258 9 2704 157 65 4 chr3 31541308 31541832 -186495326 + L1MB3 LINE L1 5626 6181 -2 1336 127 53 4 chr3 31541992 31542237 -186494921 + L1MA5 LINE L1 6040 6296 -4 1773 193 122 55 chr3 31542241 31542846 -186494312 - MER67D LTR ERV1 -4 399 25 450 138 69 11 chr3 31542879 31542966 -186494192 - LTR54 LTR ERV1 -418 92 1 558 226 27 14 chr3 31543194 31543340 -186493818 - MER57A-int LTR ERV1 -6427 1693 1546 1664 172 72 9 chr3 31543597 31543916 -186493242 - MER44D DNA MER2_type 0 609 1 1572 231 20 32 chr3 31543936 31544378 -186492780 - MER57A-int LTR ERV1 -1784 5753 5317 2021 122 0 49 chr3 31545424 31545752 -186491406 - AluSx SINE Alu 0 312 1 930 204 0 6 chr3 31546746 31546913 -186490245 - FRAM SINE Alu 0 166 1 256 114 0 0 chr3 31547022 31547057 -186490101 - MER57A-int LTR ERV1 -7276 261 227 688 312 26 13 chr3 31547089 31547320 -186489838 - MER57A-int LTR ERV1 -7290 247 14 503 256 49 30 chr3 31547334 31547537 -186489621 - MER57A LTR ERV1 0 403 197 394 158 73 24 chr3 31547577 31547659 -186489499 - LTR54 LTR ERV1 -424 86 1 494 163 0 0 chr3 31547659 31547739 -186489419 - MER67D LTR ERV1 -434 80 1 1301 239 114 74 chr3 31548249 31548773 -186488385 + L1ME LINE L1 309 853 -5687 1681 206 118 73 chr3 31548780 31549330 -186487828 + L1MD2 LINE L1 5768 6342 -17 455 299 95 9 chr3 31549427 31549798 -186487360 + L1ME LINE L1 2532 2969 -3571 570 253 17 34 chr3 31550023 31550256 -186486902 + L1MB8 LINE L1 5944 6172 -6 366 191 29 19 chr3 31550263 31550368 -186486790 + L1MCc LINE L1 52 157 -6266 281 167 17 0 chr3 31550367 31550427 -186486731 + L1MCc LINE L1 1135 1195 -5228 * 900 270 76 36 chr3 31550520 31550768 -186486390 + L1ME LINE L1 4504 4741 -1823 1960 140 20 0 chr3 31550768 31551060 -186486098 + AluSx SINE Alu 1 298 -14 900 270 76 36 chr3 31551060 31551095 -186486063 + L1ME LINE L1 4741 4773 -1791 2274 150 45 26 chr3 31551095 31551515 -186485643 - MSTA LTR MaLR 0 428 1 9074 153 64 4 chr3 31551515 31553072 -186484086 - MSTA-int LTR MaLR 0 1651 1 2068 185 33 33 chr3 31553072 31553500 -186483658 - MSTA LTR MaLR 0 428 1 900 270 76 36 chr3 31553500 31554721 -186482437 + L1ME LINE L1 4772 6193 -371 623 235 25 62 chr3 31554769 31555012 -186482146 + MER106A DNA MER1_type 2 235 -1 22 56 0 0 chr3 31555537 31555573 -186481585 + AT_rich Low_complexity Low_complexity 1 36 0 1244 287 90 36 chr3 31557858 31558440 -186478718 + L2 LINE L2 2456 3105 -208 524 237 34 0 chr3 31558440 31558558 -186478600 + FLAM_A SINE Alu 1 122 -11 1244 287 90 36 chr3 31558558 31558779 -186478379 + L2 LINE L2 3105 3313 0 24095 108 11 16 chr3 31560093 31564037 -186473121 + L1PA7 LINE L1 770 4694 -1452 6881 64 3 0 chr3 31564042 31565442 -186471716 + L1PA7 LINE L1 4758 6161 0 546 230 117 42 chr3 31565518 31565731 -186471427 + MIR SINE MIR 34 262 0 224 324 9 63 chr3 31565968 31566079 -186471079 + L2 LINE L2 3168 3272 0 351 331 5 65 chr3 31566121 31566305 -186470853 - L2 LINE L2 -234 3038 2866 860 198 22 127 chr3 31567137 31567500 -186469658 + LTR39 LTR ERV1 1 325 -458 633 221 13 7 chr3 31567554 31567708 -186469450 + LTR39 LTR ERV1 599 753 -30 367 283 182 25 chr3 31567850 31568048 -186469110 - MIR SINE MIR -29 233 5 1330 129 27 2 chr3 31568050 31568311 -186468847 - LTR54 LTR ERV1 0 510 212 25 31 0 0 chr3 31568558 31568590 -186468568 + AT_rich Low_complexity Low_complexity 1 32 0 3863 155 12 29 chr3 31569085 31569803 -186467355 - MER50 LTR ERV1 -28 706 1 1662 182 10 23 chr3 31569868 31570170 -186466988 - AluSg SINE Alu -12 298 1 712 203 6 0 chr3 31570530 31570693 -186466465 - L1P LINE L1 -1047 5099 4936 402 161 0 23 chr3 31570693 31570765 -186466393 + L1PA16 LINE L1 6081 6165 -1 2235 105 3 0 chr3 31571446 31571741 -186465417 - AluSx SINE Alu -16 296 1 626 197 41 14 chr3 31573047 31573194 -186463964 - L1MC3 LINE L1 -445 7340 7190 352 222 22 11 chr3 31573194 31573284 -186463874 - MLT1F1 LTR MaLR -442 125 35 2937 192 20 113 chr3 31573284 31574512 -186462646 - L1MC3 LINE L1 -688 7134 6006 1468 261 76 28 chr3 31574568 31575186 -186461972 - L1M4 LINE L1 -2042 4104 3457 8893 77 0 0 chr3 31575192 31577177 -186459981 + L1PA3 LINE L1 4162 6155 0 191 368 57 0 chr3 31577478 31577584 -186459574 + L2 LINE L2 2937 3048 -224 187 318 0 0 chr3 31577610 31577654 -186459504 - MIR SINE MIR -23 239 196 1649 161 38 10 chr3 31578824 31579115 -186458043 + AluJo SINE Alu 7 305 -7 413 241 203 0 chr3 31579219 31579352 -186457806 - LTR16C LTR ERVL -15 476 317 2061 116 73 14 chr3 31580191 31580545 -186456613 - THE1C LTR MaLR 0 375 1 241 315 76 11 chr3 31581639 31581731 -186455427 - L2 LINE L2 -12 3260 3163 26 30 0 0 chr3 31581765 31581798 -186455360 + AT_rich Low_complexity Low_complexity 1 33 0 2797 103 92 2 chr3 31581816 31582262 -186454896 - LTR19A LTR ERV1 0 486 1 398 265 86 83 chr3 31582500 31582813 -186454345 - MLT1H LTR MaLR -16 533 220 1841 156 113 43 chr3 31583008 31583406 -186453752 + MSTB LTR MaLR 1 426 0 884 186 52 4 chr3 31583606 31583837 -186453321 - AluY SINE Alu -41 270 29 252 0 0 0 chr3 31584639 31584667 -186452491 + (T)n Simple_repeat Simple_repeat 1 28 0 213 325 124 35 chr3 31585075 31585244 -186451914 - MIR3 SINE MIR -7 201 18 2322 110 3 0 chr3 31585954 31586254 -186450904 - AluSp SINE Alu -11 302 2 564 284 41 50 chr3 31586436 31586777 -186450381 + LTR16A LTR ERVL 25 362 -88 973 298 85 22 chr3 31586855 31587510 -186449648 - L2 LINE L2 -2 3311 2617 376 300 42 33 chr3 31587917 31588160 -186448998 + L1ME LINE L1 3211 3455 -2691 6811 62 6 2 chr3 31588169 31589554 -186447604 - L1PA7 LINE L1 -1 6153 4758 23943 109 11 16 chr3 31589559 31593502 -186443656 - L1PA7 LINE L1 -1452 4694 770 7613 147 41 33 chr3 31594400 31595910 -186441248 + L1P LINE L1 11 1532 -4614 388 248 111 0 chr3 31596119 31596236 -186440922 + MIR SINE MIR 99 228 -34 2086 132 0 10 chr3 31596509 31596813 -186440345 + AluSx SINE Alu 12 312 0 413 303 17 52 chr3 31597577 31597867 -186439291 + L1PA12 LINE L1 2 281 -7300 1413 139 31 38 chr3 31598623 31598910 -186438248 - THE1C LTR MaLR 0 375 91 7722 84 8 3 chr3 31599024 31600160 -186436998 + L1P LINE L1 3404 4545 -1601 514 355 18 0 chr3 31600423 31600640 -186436518 + MIR SINE MIR 15 235 -27 313 319 7 0 chr3 31601417 31601552 -186435606 + L1ME LINE L1 4900 5035 -1111 624 281 153 11 chr3 31601807 31602173 -186434985 + L1ME LINE L1 5354 5771 -393 2311 110 105 0 chr3 31602441 31602840 -186434318 + LTR7 LTR ERV1 1 441 -9 3186 118 5 50 chr3 31603125 31603159 -186433999 + L1P LINE L1 2095 2129 -4017 309 68 0 0 chr3 31603159 31603203 -186433955 + (TA)n Simple_repeat Simple_repeat 2 45 0 3186 118 5 50 chr3 31603203 31603224 -186433934 + L1P LINE L1 2129 2149 -3997 2660 87 0 6 chr3 31603224 31603590 -186433568 - L1PA5 LINE L1 -5 6149 5786 3186 118 5 50 chr3 31603590 31604135 -186433023 + L1P LINE L1 2149 2669 -3477 1794 172 14 8 chr3 31604509 31605169 -186431989 - L1PA5 LINE L1 -479 5684 5020 262 253 11 0 chr3 31605412 31605499 -186431659 + L1M4 LINE L1 2798 2885 -3964 3479 217 20 6 chr3 31605570 31606452 -186430706 + L1M4 LINE L1 2903 3797 -3051 848 164 20 40 chr3 31606623 31606824 -186430334 + MLT1B LTR MaLR 190 386 -4 195 298 131 0 chr3 31606828 31606912 -186430246 - MIR SINE MIR -126 136 42 217 267 89 11 chr3 31607013 31607103 -186430055 + MIR SINE MIR 47 143 -119 3274 188 21 4 chr3 31607806 31608557 -186428601 - L1 LINE L1 -1468 4678 3915 2020 296 67 20 chr3 31608948 31609762 -186427396 - L2 LINE L2 -237 3035 2174 2434 74 0 3 chr3 31609919 31610216 -186426942 + AluY SINE Alu 1 296 -15 2175 108 7 0 chr3 31610313 31610610 -186426548 + AluSx SINE Alu 1 299 -13 241 358 50 5 chr3 31611154 31611375 -186425783 + L1M4 LINE L1 4740 4970 -1878 2299 105 0 23 chr3 31611764 31612070 -186425088 - AluSg SINE Alu -11 299 1 1186 286 48 25 chr3 31612247 31612765 -186424393 - Tigger8 DNA MER2_type -126 540 11 445 271 30 56 chr3 31612844 31613164 -186423994 - MLT1F LTR MaLR -6 536 149 374 248 25 18 chr3 31613197 31613333 -186423825 - MLT1G3 LTR MaLR -349 200 8 1347 195 8 0 chr3 31613459 31613716 -186423442 + L1MC/D LINE L1 5374 5632 -712 391 165 47 0 chr3 31613721 31613806 -186423352 + L1MC2 LINE L1 6256 6344 0 266 238 10 20 chr3 31613868 31613969 -186423189 + L1M4 LINE L1 5252 5351 -1497 342 324 10 0 chr3 31614028 31614130 -186423028 + MIR SINE MIR 157 259 -3 590 313 78 36 chr3 31614236 31614543 -186422615 - L2 LINE L2 -1538 1776 1457 201 328 15 0 chr3 31614570 31614637 -186422521 + MER5A DNA MER1_type 122 189 0 3885 112 28 39 chr3 31615005 31616102 -186421056 - L1PA11 LINE L1 -237 5937 4841 345 62 0 0 chr3 31616446 31616494 -186420664 + (TG)n Simple_repeat Simple_repeat 1 48 0 315 397 0 9 chr3 31617088 31617204 -186419954 + L2 LINE L2 3150 3264 -8 410 249 289 0 chr3 31617641 31617866 -186419292 + LTR16A1 LTR ERVL 168 457 0 827 292 4 6 chr3 31619195 31619434 -186417724 + MIR SINE MIR 13 247 -15 284 231 0 0 chr3 31619452 31619504 -186417654 - L2 LINE L2 -3 3310 3259 290 143 16 0 chr3 31619555 31619618 -186417540 + (ATG)n Simple_repeat Simple_repeat 3 66 0 640 298 21 29 chr3 31620101 31620339 -186416819 + MIR SINE MIR 13 248 -14 21 0 0 0 chr3 31620617 31620638 -186416520 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 31621118 31621157 -186416001 + AT_rich Low_complexity Low_complexity 1 39 0 5148 26 1 1 chr3 31621370 31622014 -186415144 - L1PA3 LINE L1 -894 5252 4605 7686 20 0 0 chr3 31622014 31622938 -186414220 + L1PA3 LINE L1 5260 6183 0 5472 23 0 0 chr3 31623015 31623713 -186413445 + L1PA3 LINE L1 5476 6173 0 1111 170 12 50 chr3 31624540 31624781 -186412377 - THE1B LTR MaLR -130 234 3 10967 95 12 9 chr3 31624783 31626193 -186410965 - THE1B-int LTR MaLR 0 1580 163 3223 76 30 11 chr3 31626193 31626629 -186410529 + MLT2A1 LTR ERVL 1 444 0 10967 95 12 9 chr3 31626629 31626793 -186410365 - THE1B-int LTR MaLR -1417 163 1 1975 146 32 46 chr3 31626793 31627162 -186409996 - THE1B LTR MaLR 0 364 1 13797 45 0 0 chr3 31627694 31629466 -186407692 - L1P LINE L1 -930 5216 3445 3329 66 0 0 chr3 31629466 31629880 -186407278 + L1PA5 LINE L1 5732 6154 0 843 180 195 7 chr3 31631037 31631309 -186405849 - MER33 DNA MER1_type 0 324 2 261 146 0 0 chr3 31631313 31631354 -186405804 - MER3 DNA MER1_type -165 44 4 213 240 36 167 chr3 31631408 31631600 -186405558 + MIR3 SINE MIR 23 189 -19 410 248 29 36 chr3 31632837 31632974 -186404184 - MLT1J2 LTR MaLR -51 399 264 432 212 77 53 chr3 31632999 31633169 -186403989 + MER58C DNA MER1_type 42 215 0 719 192 27 12 chr3 31633233 31633406 -186403752 - MLT1J1 LTR MaLR -289 222 6 1961 143 0 4 chr3 31633812 31634115 -186403043 + AluSc SINE Alu 1 302 0 490 333 48 26 chr3 31634217 31634448 -186402710 + MIR SINE MIR 26 261 -1 1104 280 45 47 chr3 31635092 31635495 -186401663 - LTR16C LTR ERVL -3 488 87 1365 215 107 57 chr3 31635635 31636123 -186401035 - MLT2B1 LTR ERVL -8 512 1 204 40 0 0 chr3 31636971 31636996 -186400162 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2020 287 131 19 chr3 31637026 31638005 -186399153 - L2 LINE L2 -42 3271 2174 2434 74 0 3 chr3 31638162 31638459 -186398699 + AluY SINE Alu 1 296 -15 2410 98 3 0 chr3 31638556 31638863 -186398295 + AluSp SINE Alu 1 308 -5 225 0 0 0 chr3 31638863 31638888 -186398270 + (TA)n Simple_repeat Simple_repeat 1 25 0 649 283 20 16 chr3 31638957 31639208 -186397950 - L1ME LINE L1 -328 5793 5542 1396 100 273 9 chr3 31639297 31639528 -186397630 + AluSg1 SINE Alu 1 292 -17 496 330 0 36 chr3 31639876 31640070 -186397088 + MER5A DNA MER1_type 2 188 -1 23 0 0 0 chr3 31640467 31640490 -186396668 + AT_rich Low_complexity Low_complexity 1 23 0 735 225 39 0 chr3 31640680 31640858 -186396300 + MER5A DNA MER1_type 2 186 -3 623 192 70 32 chr3 31640862 31641018 -186396140 - MER5A DNA MER1_type -21 168 7 386 282 29 24 chr3 31641154 31641324 -186395834 + LTR16C LTR ERVL 309 479 -12 690 232 170 47 chr3 31643541 31643930 -186393228 - MER110 LTR ERV1 0 468 63 2139 128 10 7 chr3 31644674 31644979 -186392179 - AluSx SINE Alu -6 306 1 586 268 54 30 chr3 31646369 31646537 -186390621 - MER5B DNA MER1_type 0 178 7 1902 147 49 30 chr3 31646723 31647091 -186390067 - THE1C LTR MaLR 0 375 1 364 320 55 5 chr3 31648105 31648305 -186388853 - LTR16C LTR ERVL -101 390 181 272 345 0 43 chr3 31648324 31648440 -186388718 + MIR SINE MIR 22 132 -76 305 247 54 32 chr3 31648785 31648878 -186388280 - L2 LINE L2 0 3313 3219 450 259 47 75 chr3 31651637 31651892 -186385266 + LTR16A1 LTR ERVL 210 457 0 279 294 55 0 chr3 31651999 31652145 -186385013 + L1MC5 LINE L1 5805 5958 -1850 1846 145 93 3 chr3 31652167 31652512 -186384646 + MLT1B LTR MaLR 15 390 0 3677 245 10 22 chr3 31652516 31653777 -186383381 + L1M4 LINE L1 2787 4032 -2114 1683 221 113 35 chr3 31653838 31654530 -186382628 + L1MC5 LINE L1 6694 7439 -522 334 200 11 32 chr3 31654567 31654662 -186382496 + L1MEc LINE L1 1928 2020 -4376 4221 237 69 22 chr3 31654702 31655191 -186381967 + L1MEc LINE L1 2122 2587 -3628 1905 127 39 75 chr3 31655191 31655577 -186381581 + THE1C LTR MaLR 1 372 -3 4221 237 69 22 chr3 31655577 31656011 -186381147 + L1MEc LINE L1 2587 2999 -3216 2218 135 30 25 chr3 31656011 31656373 -186380785 - THE1B LTR MaLR 0 364 1 4221 237 69 22 chr3 31656373 31657133 -186380025 + L1MEc LINE L1 2999 3845 -2370 509 211 66 110 chr3 31657248 31657438 -186379720 + L1MC5 LINE L1 7610 7782 -179 2079 130 0 3 chr3 31657438 31657738 -186379420 + AluSx SINE Alu 1 299 -13 509 211 66 110 chr3 31657738 31657865 -186379293 + L1MC5 LINE L1 7782 7913 -48 39 0 0 0 chr3 31657874 31657913 -186379245 + AT_rich Low_complexity Low_complexity 1 39 0 209 358 11 32 chr3 31658185 31658280 -186378878 - L2 LINE L2 -6 3307 3215 750 213 46 51 chr3 31658476 31658692 -186378466 - MER58C DNA MER1_type 0 215 1 435 282 42 28 chr3 31659959 31660101 -186377057 - MIR SINE MIR -117 145 2 538 276 94 26 chr3 31660241 31660433 -186376725 - MIR SINE MIR -47 215 11 1361 115 15 10 chr3 31663793 31663993 -186373165 + AluSq SINE Alu 107 307 -6 1919 230 43 36 chr3 31664245 31664996 -186372162 + L1MEc LINE L1 3917 4672 -1543 877 119 0 0 chr3 31665426 31665544 -186371614 - AluSg SINE Alu -192 118 1 349 69 0 0 chr3 31665545 31665603 -186371555 + HSMAR2 DNA Mariner 1244 1301 -1 236 352 57 0 chr3 31665603 31665691 -186371467 - MIR SINE MIR -71 137 45 236 323 186 32 chr3 31665841 31665965 -186371193 + L2 LINE L2 3121 3263 -9 3885 112 28 39 chr3 31667195 31668292 -186368866 - L1PA11 LINE L1 -237 5937 4841 327 65 0 0 chr3 31668636 31668682 -186368476 + (TG)n Simple_repeat Simple_repeat 1 46 0 315 397 0 9 chr3 31669276 31669392 -186367766 + L2 LINE L2 3150 3264 -8 410 249 289 0 chr3 31669829 31670054 -186367104 + LTR16A1 LTR ERVL 168 457 0 849 286 2 19 chr3 31671383 31671622 -186365536 + MIR SINE MIR 13 247 -15 284 231 0 0 chr3 31671640 31671692 -186365466 - L2 LINE L2 -3 3310 3259 290 143 16 0 chr3 31671743 31671806 -186365352 + (ATG)n Simple_repeat Simple_repeat 3 66 0 637 286 25 34 chr3 31672289 31672527 -186364631 + MIR SINE MIR 13 248 -14 21 0 0 0 chr3 31672805 31672826 -186364332 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 31673306 31673345 -186363813 + AT_rich Low_complexity Low_complexity 1 39 0 5136 28 1 1 chr3 31673558 31674202 -186362956 - L1PA3 LINE L1 -894 5252 4605 7658 21 0 0 chr3 31674202 31675122 -186362036 + L1PA3 LINE L1 5260 6179 0 5460 24 0 0 chr3 31675199 31675897 -186361261 + L1PA3 LINE L1 5476 6173 0 1111 170 12 50 chr3 31676724 31676965 -186360193 - THE1B LTR MaLR -130 234 3 10967 95 12 9 chr3 31676967 31678377 -186358781 - THE1B-int LTR MaLR 0 1580 163 3173 80 30 11 chr3 31678377 31678813 -186358345 + MLT2A1 LTR ERVL 1 444 0 10967 95 12 9 chr3 31678813 31678977 -186358181 - THE1B-int LTR MaLR -1417 163 1 1933 152 32 46 chr3 31678977 31679346 -186357812 - THE1B LTR MaLR 0 364 1 13832 43 0 0 chr3 31679878 31681650 -186355508 - L1P LINE L1 -930 5216 3445 3329 66 0 0 chr3 31681650 31682064 -186355094 + L1PA5 LINE L1 5732 6154 0 843 180 195 7 chr3 31683221 31683493 -186353665 - MER33 DNA MER1_type 0 324 2 261 146 0 0 chr3 31683497 31683538 -186353620 - MER3 DNA MER1_type -165 44 4 213 240 36 167 chr3 31683592 31683784 -186353374 + MIR3 SINE MIR 23 189 -19 410 248 29 36 chr3 31685021 31685158 -186352000 - MLT1J2 LTR MaLR -51 399 264 432 212 77 53 chr3 31685183 31685353 -186351805 + MER58C DNA MER1_type 42 215 0 719 192 27 12 chr3 31685417 31685590 -186351568 - MLT1J1 LTR MaLR -289 222 6 1935 146 0 4 chr3 31685996 31686299 -186350859 + AluSc SINE Alu 1 302 0 490 333 48 26 chr3 31686401 31686632 -186350526 + MIR SINE MIR 26 261 -1 1092 283 45 47 chr3 31687276 31687679 -186349479 - LTR16C LTR ERVL -3 488 87 1365 215 107 57 chr3 31687819 31688307 -186348851 - MLT2B1 LTR ERVL -8 512 1 204 40 0 0 chr3 31689152 31689177 -186347981 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2020 287 131 19 chr3 31689207 31690186 -186346972 - L2 LINE L2 -42 3271 2174 2434 74 0 3 chr3 31690343 31690640 -186346518 + AluY SINE Alu 1 296 -15 2410 98 3 0 chr3 31690737 31691044 -186346114 + AluSp SINE Alu 1 308 -5 225 0 0 0 chr3 31691044 31691069 -186346089 + (TA)n Simple_repeat Simple_repeat 2 26 0 649 283 20 16 chr3 31691138 31691389 -186345769 - L1ME LINE L1 -328 5793 5542 1396 100 273 9 chr3 31691478 31691709 -186345449 + AluSg1 SINE Alu 1 292 -17 496 330 0 36 chr3 31692057 31692251 -186344907 + MER5A DNA MER1_type 2 188 -1 23 0 0 0 chr3 31692648 31692671 -186344487 + AT_rich Low_complexity Low_complexity 1 23 0 735 225 39 0 chr3 31692861 31693039 -186344119 + MER5A DNA MER1_type 2 186 -3 623 192 70 32 chr3 31693043 31693199 -186343959 - MER5A DNA MER1_type -21 168 7 386 282 29 24 chr3 31693335 31693505 -186343653 + LTR16C LTR ERVL 309 479 -12 690 232 170 47 chr3 31695722 31696111 -186341047 - MER110 LTR ERV1 0 468 63 2139 128 10 7 chr3 31696855 31697160 -186339998 - AluSx SINE Alu -6 306 1 586 268 54 30 chr3 31698550 31698718 -186338440 - MER5B DNA MER1_type 0 178 7 1902 147 49 30 chr3 31698904 31699272 -186337886 - THE1C LTR MaLR 0 375 1 364 320 55 5 chr3 31700286 31700486 -186336672 - LTR16C LTR ERVL -101 390 181 272 345 0 43 chr3 31700505 31700621 -186336537 + MIR SINE MIR 22 132 -76 305 247 54 32 chr3 31700966 31701059 -186336099 - L2 LINE L2 0 3313 3219 526 255 47 75 chr3 31703818 31704073 -186333085 + LTR16A1 LTR ERVL 210 457 0 312 294 55 0 chr3 31704180 31704326 -186332832 + L1MC5 LINE L1 5805 5958 -1850 1965 145 93 3 chr3 31704348 31704693 -186332465 + MLT1B LTR MaLR 15 390 0 3980 245 10 22 chr3 31704697 31705958 -186331200 + L1M4 LINE L1 2787 4032 -2114 1877 221 113 35 chr3 31706019 31706711 -186330447 + L1MC5 LINE L1 6694 7439 -522 361 200 11 32 chr3 31706748 31706843 -186330315 + L1MC5 LINE L1 1928 2020 -4376 4616 236 76 34 chr3 31706883 31707372 -186329786 + L1MC5 LINE L1 2122 2589 -5441 1899 127 39 75 chr3 31707372 31707758 -186329400 + THE1C LTR MaLR 1 372 -3 4616 236 76 34 chr3 31707758 31708192 -186328966 + L1MC5 LINE L1 2589 3004 -5026 2211 135 30 25 chr3 31708192 31708554 -186328604 - THE1B LTR MaLR 0 364 1 4616 236 76 34 chr3 31708554 31709619 -186327539 + L1MC5 LINE L1 3004 4023 -4007 2059 130 0 3 chr3 31709619 31709919 -186327239 + AluSx SINE Alu 1 299 -13 4616 236 76 34 chr3 31709919 31710048 -186327110 + L1MC5 LINE L1 4023 7984 -46 39 0 0 0 chr3 31710055 31710094 -186327064 + AT_rich Low_complexity Low_complexity 1 39 0 213 358 11 32 chr3 31710366 31710461 -186326697 - L2 LINE L2 -6 3307 3215 754 213 46 51 chr3 31710657 31710873 -186326285 - MER58C DNA MER1_type 0 215 1 423 282 42 28 chr3 31712140 31712282 -186324876 - MIR SINE MIR -117 145 2 531 276 94 26 chr3 31712422 31712614 -186324544 - MIR SINE MIR -47 215 11 1456 112 10 5 chr3 31715974 31716180 -186320978 + AluSq SINE Alu 107 313 0 297 185 0 0 chr3 31716220 31716285 -186320873 + CT-rich Low_complexity Low_complexity 2 66 0 807 322 143 26 chr3 31716471 31717126 -186320032 + L2 LINE L2 2100 2831 -483 276 391 8 0 chr3 31717709 31717837 -186319321 - MER5B DNA MER1_type -29 149 21 267 386 14 14 chr3 31718286 31718426 -186318732 + MIR SINE MIR 15 154 -108 222 159 68 0 chr3 31719426 31719470 -186317688 + MIR SINE MIR 31 77 -185 1283 251 111 18 chr3 31719484 31719882 -186317276 + LTR16A LTR ERVL 16 450 0 810 207 12 30 chr3 31719882 31720051 -186317107 + MIR SINE MIR 76 241 -21 640 246 198 56 chr3 31720984 31721398 -186315760 + L2 LINE L2 2169 2641 -673 1895 145 3 27 chr3 31721628 31721924 -186315234 - AluJb SINE Alu -23 289 1 545 139 12 0 chr3 31722063 31722149 -186315009 + FLAM_A SINE Alu 41 127 -15 208 135 0 0 chr3 31722191 31722228 -186314930 + L2 LINE L2 3277 3313 0 326 351 37 27 chr3 31722296 31722484 -186314674 - MIR SINE MIR -13 249 60 351 0 0 0 chr3 31722838 31722877 -186314281 + (CA)n Simple_repeat Simple_repeat 1 39 0 267 216 0 0 chr3 31722976 31723027 -186314131 + MIR3 SINE MIR 135 185 -23 181 307 238 10 chr3 31723102 31723203 -186313955 + MIR SINE MIR 106 229 -33 1772 160 46 146 chr3 31723234 31723753 -186313405 + MLT1C LTR MaLR 1 467 0 390 234 119 40 chr3 31723810 31723917 -186313241 + MER112 DNA MER1_type 1 98 -162 524 15 15 0 chr3 31723917 31723982 -186313176 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 390 234 119 40 chr3 31723982 31724075 -186313083 + MER112 DNA MER1_type 98 217 -43 26 50 0 0 chr3 31724584 31724624 -186312534 + AT_rich Low_complexity Low_complexity 1 40 0 1745 184 0 3 chr3 31724886 31725191 -186311967 + AluJo SINE Alu 1 304 0 1340 291 90 2 chr3 31725528 31725974 -186311184 + MER69 DNA AcHobo 84 568 -658 554 213 115 0 chr3 31725972 31726146 -186311012 + MER69 DNA AcHobo 2010 2203 -323 * 1132 295 83 13 chr3 31726848 31727461 -186309697 + HAL1b LINE L1 120 775 -573 384 226 68 68 chr3 31727464 31727610 -186309548 + L1MB1 LINE L1 5610 5755 -415 2015 190 47 49 chr3 31727740 31728192 -186308966 + MER74C LTR ERVL 10 460 0 454 269 50 0 chr3 31728203 31728322 -186308836 - MER45A DNA AcHobo -53 125 1 49 52 0 0 chr3 31728444 31728521 -186308637 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr3 31728618 31728639 -186308519 + AT_rich Low_complexity Low_complexity 1 21 0 815 159 91 58 chr3 31728784 31728880 -186308278 + L1MB1 LINE L1 5954 6045 -123 1942 122 3 28 chr3 31728880 31729196 -186307962 + AluSx SINE Alu 1 309 0 815 159 91 58 chr3 31729196 31729306 -186307852 + L1MB1 LINE L1 6045 6168 0 1691 153 167 16 chr3 31729607 31729979 -186307179 + MSTA LTR MaLR 1 428 0 1317 202 12 19 chr3 31731038 31731164 -186305994 + AluJb SINE Alu 1 126 -186 456 19 0 0 chr3 31731164 31731217 -186305941 + (TA)n Simple_repeat Simple_repeat 1 53 0 303 93 0 0 chr3 31731219 31731262 -186305896 + (CA)n Simple_repeat Simple_repeat 2 44 0 1317 202 12 19 chr3 31731262 31731389 -186305769 + AluJb SINE Alu 127 255 -57 42 0 0 0 chr3 31731390 31731432 -186305726 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 31731534 31731556 -186305602 + AT_rich Low_complexity Low_complexity 1 22 0 2277 103 3 0 chr3 31731712 31732013 -186305145 - AluSx SINE Alu -10 302 1 816 274 95 40 chr3 31732429 31732852 -186304306 + LTR33 LTR ERVL 7 452 -69 22 56 0 0 chr3 31733894 31733930 -186303228 + AT_rich Low_complexity Low_complexity 1 36 0 1501 111 0 0 chr3 31735090 31735288 -186301870 + AluSg/x SINE Alu 97 294 -16 408 161 0 23 chr3 31735969 31736056 -186301102 - L1PA16 LINE L1 -1 6165 6081 688 196 7 0 chr3 31736056 31736204 -186300954 + L1P LINE L1 4951 5099 -1047 1916 161 121 5 chr3 31736209 31736582 -186300576 + MSTA LTR MaLR 1 416 -12 377 160 18 49 chr3 31736583 31736706 -186300452 + L1P LINE L1 5121 5236 -910 1892 159 62 0 chr3 31736806 31737126 -186300032 + MER2 DNA MER2_type 6 345 0 245 98 24 0 chr3 31737130 31737171 -186299987 + (CTAAA)n Simple_repeat Simple_repeat 4 45 0 231 229 0 16 chr3 31738282 31738343 -186298815 - MLT1H LTR MaLR -391 158 99 226 356 136 0 chr3 31738447 31738579 -186298579 + MIR3 SINE MIR 16 165 -43 1356 261 45 14 chr3 31739097 31739541 -186297617 + LTR37B LTR ERV1 5 462 -6 252 79 0 26 chr3 31740428 31740466 -186296692 + FLAM SINE Alu 86 122 -11 22 88 0 0 chr3 31740522 31740579 -186296579 + AT_rich Low_complexity Low_complexity 1 57 0 227 195 0 0 chr3 31741274 31741315 -186295843 + L2 LINE L2 3272 3312 -1 989 266 80 47 chr3 31741631 31742033 -186295125 - LTR16A LTR ERVL -18 432 18 195 129 0 0 chr3 31742098 31742129 -186295029 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 237 347 27 40 chr3 31742569 31742719 -186294439 - MIR SINE MIR -50 212 65 22 0 0 0 chr3 31743749 31743771 -186293387 + AT_rich Low_complexity Low_complexity 1 22 0 5794 116 28 11 chr3 31743904 31744758 -186292400 + L1MA3 LINE L1 5382 6253 -52 2090 124 3 3 chr3 31744758 31745057 -186292101 + AluSq SINE Alu 1 299 -14 5794 116 28 11 chr3 31745057 31745111 -186292047 + L1MA3 LINE L1 6253 6305 0 462 291 53 67 chr3 31745229 31745496 -186291662 - MIR SINE MIR 0 262 2 365 253 0 11 chr3 31745665 31745752 -186291406 + MARNA DNA Mariner 298 383 -203 229 346 88 13 chr3 31745794 31745953 -186291205 + MARNA DNA Mariner 398 568 -18 236 299 126 0 chr3 31747193 31747280 -186289878 - MIR SINE MIR -81 181 84 6389 254 63 22 chr3 31748857 31751601 -186285557 + L1ME1 LINE L1 1110 3741 -2474 2601 51 0 3 chr3 31751601 31751913 -186285245 + AluY SINE Alu 1 311 0 6389 254 63 22 chr3 31751913 31752338 -186284820 + L1ME1 LINE L1 3741 4147 -2068 1687 178 0 14 chr3 31752338 31752624 -186284534 + AluJo SINE Alu 7 288 -24 6389 254 63 22 chr3 31752624 31753549 -186283609 + L1ME1 LINE L1 4147 5348 -867 814 286 65 62 chr3 31753694 31754278 -186282880 + PABL_B LTR ERV1 82 667 0 2388 220 32 41 chr3 31754278 31754911 -186282247 + L1ME1 LINE L1 5604 6230 -5 7212 78 8 0 chr3 31755501 31756890 -186280268 + L1PA8 LINE L1 4769 6164 -8 255 250 0 0 chr3 31757683 31757735 -186279423 - L2 LINE L2 -1 3312 3261 2137 102 33 20 chr3 31758166 31758470 -186278688 - AluSx SINE Alu -4 308 1 267 325 12 0 chr3 31758561 31758644 -186278514 - L3 LINE CR1 -205 1372 1289 30 45 0 0 chr3 31758747 31758791 -186278367 + AT_rich Low_complexity Low_complexity 1 44 0 825 325 139 18 chr3 31758979 31759484 -186277674 - L3 LINE CR1 -330 1247 682 303 318 0 0 chr3 31759520 31759608 -186277550 + L1MC4 LINE L1 6614 6701 -1341 228 156 0 0 chr3 31759608 31759653 -186277505 + LTR66 LTR ERVL 394 438 -172 * 230 156 0 0 chr3 31759615 31759660 -186277498 - LTR66 LTR ERVL -172 438 394 314 247 11 34 chr3 31759660 31759749 -186277409 - L1MC4 LINE L1 -1341 6701 6615 345 275 0 11 chr3 31759756 31759847 -186277311 - L1MC4 LINE L1 -1339 6703 6614 322 289 0 11 chr3 31759768 31759858 -186277300 + L1MC4 LINE L1 6614 6702 -1340 * 306 73 0 0 chr3 31759865 31759906 -186277252 + (CA)n Simple_repeat Simple_repeat 2 42 0 472 246 207 6 chr3 31759908 31760087 -186277071 - L3 LINE CR1 -903 674 460 23 0 0 0 chr3 31761051 31761074 -186276084 + AT_rich Low_complexity Low_complexity 1 23 0 492 25 25 25 chr3 31761133 31761212 -186275946 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 241 316 94 43 chr3 31761319 31761436 -186275722 - MIR SINE MIR -62 146 24 367 323 132 6 chr3 31761733 31761900 -186275258 + MIR3 SINE MIR 20 207 -1 529 264 115 92 chr3 31762069 31762505 -186274653 - MLT1J1 LTR MaLR 0 446 1 1715 162 15 42 chr3 31763450 31763783 -186273375 - MER33 DNA MER1_type 0 324 1 560 234 58 13 chr3 31765328 31765482 -186271676 + MIR SINE MIR 102 262 0 3903 117 11 0 chr3 31765664 31766185 -186270973 + MER1A DNA MER1_type 1 527 0 592 225 8 23 chr3 31766591 31766720 -186270438 + MLT1J2 LTR MaLR 83 209 -241 427 190 13 0 chr3 31766795 31766874 -186270284 + MLT1J2 LTR MaLR 361 440 -10 332 320 82 46 chr3 31767216 31767722 -186269436 + L2 LINE L2 2710 3311 -2 273 325 30 24 chr3 31767953 31768122 -186269036 - L1 LINE L1 -3549 2597 2428 230 143 0 0 chr3 31768182 31768224 -186268934 + MER46C DNA MER2_type 127 168 -170 378 0 0 0 chr3 31768724 31768766 -186268392 + (TA)n Simple_repeat Simple_repeat 2 43 0 970 260 25 1 chr3 31769319 31769555 -186267603 - MLT1E3 LTR MaLR 0 624 336 1146 255 154 68 chr3 31769555 31770101 -186267057 - MLT1E LTR MaLR 0 593 1 970 260 25 1 chr3 31770101 31770129 -186267029 - MLT1E3 LTR MaLR -288 336 310 547 311 159 21 chr3 31770114 31770548 -186266610 + MLT1L LTR MaLR 112 605 -10 * 194 237 40 40 chr3 31770705 31770781 -186266377 + MIR SINE MIR 129 204 -58 2443 53 3 13 chr3 31771303 31771606 -186265552 + AluY SINE Alu 3 302 -9 660 219 42 110 chr3 31771779 31772245 -186264913 - MLT1H LTR MaLR 0 580 1 497 259 168 0 chr3 31772407 31772592 -186264566 + MIR SINE MIR 47 262 0 212 267 89 11 chr3 31773805 31773895 -186263263 - MIR SINE MIR -119 143 47 189 298 131 0 chr3 31773996 31774080 -186263078 + MIR SINE MIR 42 136 -126 2226 134 26 18 chr3 31774084 31774464 -186262694 - MLT1B LTR MaLR -4 386 4 1174 248 116 14 chr3 31774520 31774883 -186262275 - MLT1E2 LTR MaLR -10 616 217 532 218 62 76 chr3 31774928 31775153 -186262005 + L2 LINE L2 3027 3248 -65 920 178 29 7 chr3 31775197 31775388 -186261770 - MLT1D LTR MaLR -337 168 1 702 235 105 6 chr3 31775504 31775666 -186261492 + MER20 DNA MER1_type 38 215 -4 634 252 75 57 chr3 31775907 31776189 -186260969 - L2 LINE L2 0 3313 3027 502 236 159 19 chr3 31777625 31777712 -186259446 + MER5A DNA MER1_type 10 83 -106 2432 160 44 12 chr3 31777712 31778125 -186259033 - MSTB LTR MaLR 0 426 1 502 236 159 19 chr3 31778125 31778194 -186258964 + MER5A DNA MER1_type 83 188 -1 879 271 158 16 chr3 31778202 31778627 -186258531 + MLT1K LTR MaLR 2 486 -102 11054 32 2 2 chr3 31778709 31780727 -186256431 - L1PA4 LINE L1 -1 6154 4138 1484 272 79 24 chr3 31782707 31783215 -186253943 - MLT1H LTR MaLR -13 536 1 1083 152 69 73 chr3 31783256 31783618 -186253540 + MER31A LTR ERV1 10 483 -2 821 310 77 30 chr3 31784741 31785206 -186251952 - L2 LINE L2 0 3313 2827 429 252 0 0 chr3 31785208 31785315 -186251843 - L1P LINE L1 -1606 4540 4434 974 83 0 0 chr3 31785315 31785436 -186251722 + L1PA16 LINE L1 6036 6156 -10 364 302 26 42 chr3 31785454 31785646 -186251512 - L2 LINE L2 -461 2853 2665 216 97 0 0 chr3 31785918 31785949 -186251209 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 298 244 198 0 chr3 31787582 31787668 -186249490 - MLT1K LTR MaLR -3 585 483 579 92 0 0 chr3 31787697 31787784 -186249374 + (TC)n Simple_repeat Simple_repeat 2 88 0 730 119 0 0 chr3 31787874 31787975 -186249183 + MLT1A1 LTR MaLR 1 101 -264 635 211 64 65 chr3 31787981 31788335 -186248823 - LTR45B LTR ERV1 0 602 259 1618 144 0 0 chr3 31788508 31788744 -186248414 + MLT1A1 LTR MaLR 130 365 0 207 0 0 0 chr3 31789061 31789084 -186248074 + (CA)n Simple_repeat Simple_repeat 2 24 0 466 312 13 52 chr3 31789137 31789368 -186247790 + L3 LINE CR1 1282 1503 -74 26 0 0 0 chr3 31789556 31789582 -186247576 + AT_rich Low_complexity Low_complexity 1 26 0 1677 168 28 7 chr3 31789607 31789898 -186247260 - AluJb SINE Alu -9 303 7 252 349 23 8 chr3 31789968 31790097 -186247061 + MER102a DNA MER1_type 200 330 0 279 0 0 0 chr3 31790222 31790253 -186246905 + (TAA)n Simple_repeat Simple_repeat 3 33 0 320 366 23 6 chr3 31790331 31790506 -186246652 - MLT1I LTR MaLR 0 409 232 494 250 71 114 chr3 31790853 31790938 -186246220 - MLT1I LTR MaLR -2 424 337 2254 99 0 3 chr3 31790938 31791240 -186245918 + AluSg SINE Alu 1 301 -9 494 250 71 114 chr3 31791240 31791564 -186245594 - MLT1I LTR MaLR -89 337 1 505 241 26 43 chr3 31791570 31791709 -186245449 - MIR SINE MIR -61 147 54 275 249 55 152 chr3 31791832 31791997 -186245161 + MIR3 SINE MIR 52 200 -8 909 274 114 25 chr3 31792302 31792954 -186244204 + L2 LINE L2 2579 3310 -3 713 192 82 0 chr3 31793281 31793427 -186243731 - MER3 DNA MER1_type -28 181 24 1363 209 45 35 chr3 31794552 31794922 -186242236 - MLT1G LTR MaLR 0 590 155 650 247 52 6 chr3 31795051 31795225 -186241933 - MLT1G LTR MaLR -408 182 1 23 0 0 0 chr3 31795441 31795464 -186241694 + AT_rich Low_complexity Low_complexity 1 23 0 1986 127 0 7 chr3 31795464 31795747 -186241411 - AluSx SINE Alu -31 281 1 273 344 111 57 chr3 31796559 31796625 -186240533 - L2 LINE L2 -337 2977 2916 1694 189 10 13 chr3 31796625 31796938 -186240220 + AluJo SINE Alu 1 312 0 273 344 111 57 chr3 31796938 31797115 -186240043 - L2 LINE L2 -398 2916 2721 426 195 88 26 chr3 31798029 31798142 -186239016 - MER20B DNA MER1_type -621 162 43 2001 169 41 32 chr3 31798219 31798764 -186238394 - MLT2A2 LTR ERVL 0 554 1 771 10 79 10 chr3 31798889 31798990 -186238168 - L1P1 LINE L1 -397 5758 5651 2855 50 0 6 chr3 31798990 31799308 -186237850 + L1PA4 LINE L1 5820 6155 0 477 209 104 43 chr3 31799369 31799507 -186237651 - MER5A DNA MER1_type -10 179 11 536 216 90 0 chr3 31800055 31800166 -186236992 + MER96 DNA MER1_type? 1 121 -54 19942 81 17 9 chr3 31800287 31801892 -186235266 + L1PA6 LINE L1 544 2135 -4019 246 32 0 0 chr3 31801892 31801923 -186235235 + (TA)n Simple_repeat Simple_repeat 2 32 0 19942 81 17 9 chr3 31801923 31801949 -186235209 + L1PA6 LINE L1 2135 2159 -3995 2883 75 17 0 chr3 31801949 31802310 -186234848 - L1PA5 LINE L1 -2 6152 5786 19942 81 17 9 chr3 31802310 31806274 -186230884 + L1PA6 LINE L1 2159 6151 -3 244 381 9 0 chr3 31806916 31807021 -186230137 + MER5B DNA MER1_type 68 173 -5 1632 198 18 9 chr3 31807294 31807632 -186229526 + MLT1A1 LTR MaLR 23 363 -2 732 191 0 40 chr3 31807635 31807787 -186229371 + MER45A DNA AcHobo 33 178 0 448 325 45 51 chr3 31807791 31808123 -186229035 - L1ME4a LINE L1 -171 5950 5621 245 287 85 0 chr3 31808149 31808243 -186228915 - MER94 DNA DNA -23 111 10 500 159 0 0 chr3 31808671 31808759 -186228399 - L1PA16 LINE L1 -9 6157 6070 2196 74 0 40 chr3 31809253 31809550 -186227608 + AluY SINE Alu 1 285 -26 327 260 36 64 chr3 31809746 31809885 -186227273 + MIR SINE MIR 20 151 -57 747 261 63 43 chr3 31810349 31810652 -186226506 - MER93a LTR ERV1 0 402 94 247 289 72 62 chr3 31810806 31810903 -186226255 - L2 LINE L2 -36 3236 3139 409 238 0 12 chr3 31811443 31811527 -186225631 - MIR SINE MIR -171 91 9 307 291 8 43 chr3 31811529 31811646 -186225512 - HAL1 LINE L1 -941 1566 1454 214 128 0 51 chr3 31811646 31811685 -186225473 + (TTCCC)n Simple_repeat Simple_repeat 5 41 0 926 225 40 24 chr3 31811695 31811944 -186225214 - MLT1F LTR MaLR -289 253 1 207 0 0 0 chr3 31812192 31812215 -186224943 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 26 30 0 0 chr3 31812291 31812324 -186224834 + AT_rich Low_complexity Low_complexity 1 33 0 20821 169 26 19 chr3 31812345 31816082 -186221076 - L1PA13 LINE L1 0 7601 3893 1771 167 43 32 chr3 31816082 31816453 -186220705 - THE1C LTR MaLR 0 375 1 20821 169 26 19 chr3 31816453 31816604 -186220554 - L1PA13 LINE L1 -3708 3893 3745 1913 139 28 3 chr3 31816604 31816892 -186220266 - AluSx SINE Alu -17 295 1 20821 169 26 19 chr3 31816892 31817290 -186219868 - L1PA13 LINE L1 -3856 3745 3351 2477 7 0 7 chr3 31817290 31817565 -186219593 + AluYa5 SINE Alu 39 311 0 20821 169 26 19 chr3 31817565 31819038 -186218120 - L1PA13 LINE L1 -4250 3351 984 367 294 20 6 chr3 31819985 31820187 -186216971 - L1ME4a LINE L1 -237 5884 5679 1134 275 115 15 chr3 31820433 31820895 -186216263 + LTR33 LTR ERVL 12 519 -2 332 337 81 50 chr3 31821090 31821376 -186215782 - L1ME4a LINE L1 -1087 5059 4754 1859 147 0 7 chr3 31821376 31821661 -186215497 - AluJb SINE Alu -29 283 1 332 337 81 50 chr3 31821661 31821792 -186215366 - L1ME4a LINE L1 -1392 4754 4629 266 260 32 8 chr3 31821822 31821945 -186215213 - L1ME4a LINE L1 -1542 4604 4479 27 29 0 0 chr3 31822330 31822364 -186214794 + AT_rich Low_complexity Low_complexity 1 34 0 1988 131 0 13 chr3 31822532 31822830 -186214328 - AluSx SINE Alu -18 294 1 2329 111 0 6 chr3 31824708 31825023 -186212135 - AluSq SINE Alu 0 313 1 596 284 74 8 chr3 31825046 31825289 -186211869 + MIR SINE MIR 3 259 -3 1017 221 142 27 chr3 31825453 31825820 -186211338 + MER20B DNA MER1_type 144 552 -231 627 228 158 6 chr3 31825831 31825989 -186211169 + MER5A DNA MER1_type 8 189 0 21 0 0 0 chr3 31826012 31826033 -186211125 + AT_rich Low_complexity Low_complexity 1 21 0 310 158 226 14 chr3 31826035 31826181 -186210977 + MER20B DNA MER1_type 605 781 -2 1650 87 0 5 chr3 31826640 31826847 -186210311 - AluY SINE Alu -18 293 88 426 316 63 13 chr3 31827468 31827626 -186209532 + MIR3 SINE MIR 38 203 -5 2177 142 129 5 chr3 31827743 31828124 -186209034 + MSTA LTR MaLR 1 428 0 4770 144 10 15 chr3 31828365 31829145 -186208013 - LTR39 LTR ERV1 -7 776 1 243 335 75 12 chr3 31829314 31829475 -186207683 + L1MC4 LINE L1 5571 5741 -2067 646 142 14 28 chr3 31829536 31829677 -186207481 - L1MC4 LINE L1 0 8042 7904 201 176 0 0 chr3 31829679 31829713 -186207445 + (TA)n Simple_repeat Simple_repeat 2 35 0 323 278 11 11 chr3 31829713 31829803 -186207355 + L1MC4 LINE L1 6614 6703 -1339 414 175 19 48 chr3 31829854 31829936 -186207222 - L1MC4 LINE L1 -377 7665 7582 3168 134 118 60 chr3 31829936 31830169 -186206989 + LTR62 LTR ERVK 1 219 -500 2697 13 0 0 chr3 31830169 31830468 -186206690 + AluY SINE Alu 1 299 -12 3168 134 118 60 chr3 31830468 31830531 -186206627 + LTR62 LTR ERVK 219 277 -442 201 39 0 0 chr3 31830531 31830557 -186206601 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 3168 134 118 60 chr3 31830557 31830829 -186206329 + LTR62 LTR ERVK 277 618 -101 2444 77 3 0 chr3 31830829 31831139 -186206019 - AluY SINE Alu 0 311 1 3168 134 118 60 chr3 31831139 31831247 -186205911 + LTR62 LTR ERVK 618 718 -1 414 175 19 48 chr3 31831247 31831267 -186205891 - L1MC4 LINE L1 -460 7582 7566 1001 165 0 0 chr3 31831267 31831425 -186205733 - FRAM SINE Alu -17 159 2 353 99 9 207 chr3 31831426 31831456 -186205702 - L1MC4 LINE L1 -468 7574 7540 1763 166 0 14 chr3 31831456 31831740 -186205418 + AluJb SINE Alu 3 282 -30 353 99 9 207 chr3 31831740 31831820 -186205338 - L1MC4 LINE L1 -502 7540 7486 412 246 48 0 chr3 31831903 31832029 -186205129 - LTR33 LTR ERVL -2 519 388 648 256 28 28 chr3 31832164 31832375 -186204783 - LTR33 LTR ERVL -308 213 3 211 298 18 0 chr3 31834511 31834568 -186202590 - L2 LINE L2 -7 3265 3208 2035 151 0 0 chr3 31834701 31835005 -186202153 - AluSx SINE Alu -8 304 1 203 302 19 126 chr3 31836768 31836927 -186200231 + L3 LINE CR1 84 225 -1352 1098 160 13 13 chr3 31836950 31837187 -186199971 - MER33 DNA MER1_type -56 268 32 342 259 59 12 chr3 31838543 31838628 -186198530 - MER91A DNA MER1_type -49 147 59 2072 134 0 25 chr3 31838709 31839029 -186198129 + AluSx SINE Alu 1 312 0 296 283 253 6 chr3 31839042 31839208 -186197950 + L2 LINE L2 3008 3214 -99 1896 173 3 3 chr3 31839475 31839782 -186197376 + AluSx SINE Alu 1 307 -5 401 326 168 24 chr3 31839986 31840277 -186196881 + L2 LINE L2 2925 3257 -15 299 291 134 15 chr3 31840290 31840424 -186196734 + L3 LINE CR1 523 672 -905 948 152 68 115 chr3 31841294 31841492 -186195666 + MER33 DNA MER1_type 17 196 -2389 1935 184 7 0 chr3 31841492 31841801 -186195357 + AluJb SINE Alu 2 312 0 948 152 68 115 chr3 31841801 31841925 -186195233 + MER33 DNA MER1_type 196 324 0 1223 279 39 3 chr3 31841986 31842345 -186194813 + LTR16C LTR ERVL 107 478 -13 2139 134 0 10 chr3 31842359 31842531 -186194627 - AluSx SINE Alu -8 304 135 309 26 0 0 chr3 31842531 31842569 -186194589 + (TG)n Simple_repeat Simple_repeat 1 38 0 2139 134 0 10 chr3 31842569 31842703 -186194455 - AluSx SINE Alu -177 135 1 330 320 8 31 chr3 31842729 31842857 -186194301 - MIR SINE MIR -133 129 5 1151 184 181 52 chr3 31842982 31843214 -186193944 + MLT1F1 LTR MaLR 3 204 -363 1297 143 65 154 chr3 31843214 31843565 -186193593 + MLT1B LTR MaLR 1 309 -81 1879 149 11 3 chr3 31843565 31843847 -186193311 + AluJb SINE Alu 1 284 -28 1297 143 65 154 chr3 31843847 31843923 -186193235 + MLT1B LTR MaLR 309 390 0 1151 184 181 52 chr3 31843923 31844220 -186192938 + MLT1F1 LTR MaLR 204 567 0 213 39 0 0 chr3 31844293 31844319 -186192839 + (TAA)n Simple_repeat Simple_repeat 2 27 0 19241 84 9 2 chr3 31844741 31847712 -186189446 + L1PA6 LINE L1 2483 5476 -678 19874 110 23 14 chr3 31848956 31852158 -186185000 + L1P LINE L1 11 3242 -2904 1892 84 4 4 chr3 31852299 31852560 -186184598 + L1PA6 LINE L1 5893 6153 -1 653 307 34 57 chr3 31853211 31853599 -186183559 - L2 LINE L2 -2 3311 2933 240 326 47 0 chr3 31855292 31855378 -186181780 + MIR SINE MIR 167 256 -6 1955 165 54 34 chr3 31855808 31856274 -186180884 + Charlie1b DNA MER1_type 1 475 -48 2202 109 36 6 chr3 31856275 31856633 -186180525 - L1PB1 LINE L1 0 6867 6499 209 153 18 45 chr3 31856640 31856751 -186180407 + (TA)n Simple_repeat Simple_repeat 1 108 0 226 171 43 14 chr3 31856776 31856846 -186180312 + (TA)n Simple_repeat Simple_repeat 2 73 0 13106 156 58 8 chr3 31856854 31861171 -186175987 - L1PB1 LINE L1 -369 6498 1731 2240 151 28 8 chr3 31861171 31861528 -186175630 + THE1B LTR MaLR 1 364 0 13106 156 58 8 chr3 31861528 31863348 -186173810 - L1PB1 LINE L1 -5136 1731 4 233 193 0 35 chr3 31863358 31863415 -186173743 + Charlie1b DNA MER1_type 465 519 -4 23 0 0 0 chr3 31863773 31863796 -186173362 + AT_rich Low_complexity Low_complexity 1 23 0 1445 216 9 15 chr3 31863831 31864164 -186172994 - MLT1A1 LTR MaLR 0 365 35 460 277 69 27 chr3 31864190 31864450 -186172708 - L1ME4a LINE L1 -1 6120 5850 283 262 56 24 chr3 31864554 31864680 -186172478 - LTR67 LTR ERVL 0 557 428 370 302 63 13 chr3 31865866 31866025 -186171133 - MIR SINE MIR -55 207 41 426 39 0 0 chr3 31866368 31866420 -186170738 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 365 235 31 53 chr3 31866599 31866797 -186170361 - L1MC4a LINE L1 -60 7748 6090 323 259 51 57 chr3 31866807 31866965 -186170193 - L1ME4a LINE L1 -176 5945 5789 569 343 78 28 chr3 31866974 31867370 -186169788 - L1ME4a LINE L1 -440 5681 5266 192 152 0 0 chr3 31867780 31867813 -186169345 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 238 359 97 0 chr3 31867828 31867931 -186169227 - L2 LINE L2 0 3272 3160 755 278 34 5 chr3 31868026 31868235 -186168923 + L2 LINE L2 2541 2755 -559 458 139 48 11 chr3 31868241 31868355 -186168803 - MLT1E LTR MaLR -8 643 501 947 239 47 109 chr3 31868370 31868967 -186168191 + L2 LINE L2 2755 3312 -1 209 347 61 0 chr3 31868976 31869074 -186168084 - L2 LINE L2 -256 3057 2954 800 267 32 14 chr3 31869104 31869117 -186168041 - MIR SINE MIR -36 226 215 2508 80 0 0 chr3 31869117 31869429 -186167729 - AluSq SINE Alu -1 312 1 800 267 32 14 chr3 31869429 31869636 -186167522 - MIR SINE MIR -47 215 2 508 327 88 33 chr3 31869642 31869948 -186167210 - L2 LINE L2 -359 2955 2633 21 57 0 0 chr3 31869983 31870018 -186167140 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr3 31870081 31870109 -186167049 + AT_rich Low_complexity Low_complexity 1 28 0 2154 208 22 38 chr3 31870257 31870413 -186166745 - L1MB8 LINE L1 -6 6172 6015 2208 114 7 3 chr3 31870413 31870711 -186166447 + AluSg SINE Alu 2 300 -10 2154 208 22 38 chr3 31870711 31871140 -186166018 - L1MB8 LINE L1 -163 6015 5592 675 255 58 0 chr3 31872008 31872196 -186164962 - L1ME LINE L1 -461 5709 5511 884 221 89 48 chr3 31872274 31872292 -186164866 + L1ME3A LINE L1 5762 5778 -392 1556 202 40 8 chr3 31872292 31872644 -186164514 - MLT1A1 LTR MaLR 0 365 3 884 221 89 48 chr3 31872644 31873018 -186164140 + L1ME3A LINE L1 5778 6170 0 1963 139 0 0 chr3 31873046 31873334 -186163824 - AluJb SINE Alu -3 309 22 21 0 0 0 chr3 31873399 31873420 -186163738 + AT_rich Low_complexity Low_complexity 1 21 0 261 209 88 81 chr3 31873643 31873791 -186163367 - L1ME LINE L1 -1511 4635 4487 414 0 0 0 chr3 31874091 31874137 -186163021 + (TG)n Simple_repeat Simple_repeat 2 47 0 448 303 83 25 chr3 31874155 31874482 -186162676 - L1MC4a LINE L1 -1934 5874 5529 31 0 0 0 chr3 31874909 31874940 -186162218 + AT_rich Low_complexity Low_complexity 1 31 0 361 224 0 24 chr3 31875139 31875224 -186161934 - MIR SINE MIR 0 262 180 749 213 132 30 chr3 31876476 31876673 -186160485 - MER20 DNA MER1_type 0 219 3 666 219 88 19 chr3 31876850 31877055 -186160103 + L1ME3 LINE L1 5943 6161 -1 617 321 11 11 chr3 31878597 31878787 -186158371 - L2 LINE L2 0 3313 3124 243 132 0 0 chr3 31879059 31879097 -186158061 + MLT1L LTR MaLR 164 201 -414 346 244 59 34 chr3 31879099 31879218 -186157940 + MLT1K LTR MaLR 162 283 -305 194 321 82 66 chr3 31879630 31879826 -186157332 - L2 LINE L2 -260 3053 2855 * 514 355 18 0 chr3 31879794 31880011 -186157147 + MIR SINE MIR 15 235 -27 192 256 0 0 chr3 31881116 31881159 -186155999 + MIR SINE MIR 50 92 -170 558 317 13 35 chr3 31881174 31881404 -186155754 - MIR SINE MIR 0 262 38 247 248 171 0 chr3 31881694 31881799 -186155359 + MLT2F LTR ERVL 532 654 -9 1552 273 50 37 chr3 31881804 31882220 -186154938 - L2 LINE L2 -97 3216 2784 782 223 114 5 chr3 31882220 31882422 -186154736 + MER58A DNA MER1_type 1 224 0 1552 273 50 37 chr3 31882422 31882753 -186154405 - L2 LINE L2 -529 2784 2459 930 186 11 6 chr3 31882900 31883077 -186154081 - MER5B DNA MER1_type 0 178 1 1313 282 19 14 chr3 31884034 31884463 -186152695 - LTR16B LTR ERVL 0 464 34 807 308 73 64 chr3 31884811 31885346 -186151812 + L2 LINE L2 1560 2099 -1215 276 250 40 10 chr3 31885452 31885552 -186151606 - MER20 DNA MER1_type -17 202 100 236 343 21 0 chr3 31885573 31885713 -186151445 - LTR16A1 LTR ERVL -10 447 305 207 0 0 0 chr3 31885783 31885806 -186151352 + (TG)n Simple_repeat Simple_repeat 2 24 0 1911 226 88 17 chr3 31886822 31887345 -186149813 + MLT1F1 LTR MaLR 6 565 -2 25 65 0 0 chr3 31887666 31887712 -186149446 + AT_rich Low_complexity Low_complexity 1 46 0 2460 54 17 0 chr3 31888683 31888979 -186148179 - AluY SINE Alu -8 303 3 21 57 0 0 chr3 31889130 31889165 -186147993 + AT_rich Low_complexity Low_complexity 1 35 0 2064 142 0 10 chr3 31889545 31889854 -186147304 + AluSx SINE Alu 7 312 0 189 0 0 0 chr3 31890813 31890834 -186146324 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr3 31890836 31890865 -186146293 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 31891188 31891210 -186145948 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr3 31891314 31891334 -186145824 + (T)n Simple_repeat Simple_repeat 1 20 0 188 313 16 0 chr3 31893532 31893596 -186143562 + L2 LINE L2 3183 3247 -66 1311 208 24 37 chr3 31893732 31894026 -186143132 + AluJb SINE Alu 2 291 -21 247 241 264 6 chr3 31895177 31895351 -186141807 - MER112 DNA MER1_type -40 220 2 283 298 304 11 chr3 31896108 31896289 -186140869 - L3 LINE CR1 -13 1564 1331 659 283 79 16 chr3 31896996 31897492 -186139666 - MLT1G1 LTR MaLR 0 595 1 191 365 54 0 chr3 31897670 31897744 -186139414 - L2 LINE L2 -40 3232 3155 1053 368 103 15 chr3 31897811 31898550 -186138608 - L3 LINE CR1 -488 1089 286 1781 202 33 33 chr3 31898576 31899061 -186138097 - L1ME1 LINE L1 -38 6128 5644 551 271 42 24 chr3 31899336 31899502 -186137656 - MIR SINE MIR -15 247 79 2094 200 86 11 chr3 31900531 31901087 -186136071 - L1ME2 LINE L1 -9 6155 5558 1634 186 73 133 chr3 31902257 31902874 -186134284 + MER119 DNA MER1_type 4 583 0 356 226 361 0 chr3 31903109 31903242 -186133916 + MER5A DNA MER1_type 9 189 0 1020 202 44 88 chr3 31903503 31903890 -186133268 + MLT1A2 LTR MaLR 5 374 0 477 291 57 34 chr3 31904022 31904197 -186132961 - MER5A DNA MER1_type -6 183 5 294 330 39 0 chr3 31904991 31905094 -186132064 - MIR SINE MIR -65 143 37 303 234 13 130 chr3 31905126 31905280 -186131878 - MIR SINE MIR -4 258 123 764 223 48 11 chr3 31905341 31905529 -186131629 + LTR41 LTR ERVL 1 195 -578 406 265 114 65 chr3 31905951 31906196 -186130962 + LTR41 LTR ERVL 510 766 -7 2600 110 3 16 chr3 31906314 31906688 -186130470 - L1PB1 LINE L1 0 6151 5783 254 264 23 0 chr3 31906706 31906793 -186130365 - L1MC4 LINE L1 -1339 6703 6615 252 273 23 0 chr3 31906794 31906882 -186130276 - L1MC4 LINE L1 -1339 6703 6614 288 250 23 0 chr3 31906894 31906982 -186130176 - L1MC4 LINE L1 -1339 6703 6614 249 234 29 16 chr3 31906904 31907009 -186130149 + L1MC4 LINE L1 1996 6983 -1339 * 6482 172 8 3 chr3 31907022 31908784 -186128374 - L1P5 LINE L1 -371 5780 4013 325 281 148 16 chr3 31908871 31908999 -186128159 - L2 LINE L2 -3 3269 3125 212 353 144 29 chr3 31909269 31909408 -186127750 + MIR3 SINE MIR 33 187 -21 21 36 0 0 chr3 31909908 31909936 -186127222 + AT_rich Low_complexity Low_complexity 1 28 0 225 368 11 0 chr3 31910011 31910098 -186127060 + MIR SINE MIR 15 102 -160 1885 133 59 3 chr3 31910411 31910697 -186126461 + AluSx SINE Alu 1 302 -10 192 300 108 39 chr3 31910905 31911035 -186126123 + L2 LINE L2 2511 2649 -665 403 138 0 0 chr3 31911035 31911093 -186126065 + MADE1 DNA Mariner 1 58 -22 311 290 11 0 chr3 31911096 31911225 -186125933 + CT-rich Low_complexity Low_complexity 1 130 0 213 413 0 0 chr3 31911272 31911410 -186125748 + C-rich Low_complexity Low_complexity 1 138 0 356 300 0 0 chr3 31911457 31911577 -186125581 + C-rich Low_complexity Low_complexity 1 120 0 739 285 76 57 chr3 31912066 31912558 -186124600 - MLT1G1 LTR MaLR -4 545 1 185 365 54 0 chr3 31912736 31912810 -186124348 - L2 LINE L2 -40 3232 3155 989 368 103 15 chr3 31912877 31913616 -186123542 - L3 LINE CR1 -488 1089 286 1993 189 37 39 chr3 31913642 31914128 -186123030 - L1ME1 LINE L1 -38 6128 5644 533 265 42 24 chr3 31914403 31914569 -186122589 - MIR SINE MIR -15 247 79 2326 189 90 14 chr3 31915598 31916154 -186121004 - L1ME2 LINE L1 -9 6155 5558 767 277 118 0 chr3 31917325 31917545 -186119613 + MER119 DNA MER1_type 4 249 -334 7835 38 1 2 chr3 31919580 31920789 -186116369 + L1PA4 LINE L1 4945 6154 -1 4006 32 6 8 chr3 31920870 31921363 -186115795 + L1P LINE L1 4138 4629 -1517 440 282 42 28 chr3 31923045 31923187 -186113971 - MIR SINE MIR -117 145 2 466 319 84 11 chr3 31923327 31923518 -186113640 - MIR SINE MIR -47 215 11 27 29 0 0 chr3 31924248 31924282 -186112876 + AT_rich Low_complexity Low_complexity 1 34 0 316 261 45 8 chr3 31924656 31924790 -186112368 + L1MB8 LINE L1 4466 4604 -1542 1595 191 24 7 chr3 31924949 31925247 -186111911 + AluJb SINE Alu 1 303 -9 22 42 0 0 chr3 31925274 31925298 -186111860 + AT_rich Low_complexity Low_complexity 1 24 0 253 397 32 19 chr3 31925486 31925642 -186111516 - L3 LINE CR1 -74 1503 1346 200 200 0 22 chr3 31925879 31925924 -186111234 + GA-rich Low_complexity Low_complexity 4 47 0 320 210 19 25 chr3 31925951 31926108 -186111050 + GA-rich Low_complexity Low_complexity 4 159 0 1595 215 36 26 chr3 31926961 31927351 -186109807 + L1MB8 LINE L1 5623 6016 -162 9195 82 13 0 chr3 31927496 31928738 -186108420 - L1P LINE L1 -1156 4990 3733 4055 124 196 14 chr3 31928867 31929198 -186107960 - L1PBa LINE L1 -4444 2419 2150 2409 151 28 8 chr3 31929198 31929555 -186107603 + THE1B LTR MaLR 1 364 0 4055 124 196 14 chr3 31929555 31930068 -186107090 - L1PBa LINE L1 -4713 2150 1421 253 260 180 20 chr3 31931473 31931573 -186105585 - MLT1K LTR MaLR -3 585 470 422 139 12 0 chr3 31931587 31931673 -186105485 + CT-rich Low_complexity Low_complexity 2 88 0 243 202 85 11 chr3 31931760 31931854 -186105304 + MLT1A1 LTR MaLR 1 101 -264 234 286 0 0 chr3 31932163 31932219 -186104939 + L3 LINE CR1 1317 1372 -205 1815 103 77 7 chr3 31932310 31932583 -186104575 + AluSx SINE Alu 1 292 -20 816 273 80 0 chr3 31933296 31933532 -186103626 + MER119 DNA MER1_type 111 365 -218 553 77 26 0 chr3 31933532 31933610 -186103548 - MADE1 DNA Mariner 0 80 1 1074 172 18 23 chr3 31933610 31933831 -186103327 + MER119 DNA MER1_type 364 583 0 343 227 375 0 chr3 31934066 31934194 -186102964 + MER5A DNA MER1_type 9 184 -5 314 266 39 23 chr3 31935036 31935164 -186101994 + MIR SINE MIR 78 207 -55 1363 209 45 35 chr3 31936832 31937202 -186099956 + MLT1G LTR MaLR 155 590 0 28835 33 8 0 chr3 31987493 31991750 -186045408 + L1PA4 LINE L1 1860 6152 -3 198 231 115 64 chr3 31991938 31992016 -186045142 - MIR SINE MIR -83 125 44 180 286 0 41 chr3 31992155 31992204 -186044954 - L3b LINE CR1 -25 1558 1512 478 314 49 29 chr3 31992430 31992675 -186044483 + MER102b DNA MER1_type 89 338 -3 183 100 0 0 chr3 31992755 31992785 -186044373 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 9857 58 3 1 chr3 31993304 31994561 -186042597 - L1P LINE L1 -4264 1882 623 769 52 0 0 chr3 31994559 31994656 -186042502 - L1P LINE L1 -6048 98 2 * 204 284 172 37 chr3 31995319 31995453 -186041705 - MIR3 SINE MIR -2 206 55 532 276 24 0 chr3 31995489 31995612 -186041546 - MER58A DNA MER1_type 0 126 1 3131 134 60 6 chr3 31995690 31996190 -186040968 + MER1A DNA MER1_type 1 527 0 4108 162 151 82 chr3 31997122 31998403 -186038755 - Charlie1a DNA MER1_type -82 1373 5 845 223 0 0 chr3 31998475 31998641 -186038517 - FRAM SINE Alu -7 169 4 200 109 0 43 chr3 31999991 32000037 -186037121 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 556 236 0 24 chr3 32000629 32000756 -186036402 - FLAM_A SINE Alu -9 124 1 365 282 0 0 chr3 32001116 32001194 -186035964 - L2 LINE L2 -7 3265 3188 376 223 182 104 chr3 32001426 32001510 -186035648 - MIR SINE MIR -19 243 167 2293 93 3 0 chr3 32001510 32001799 -186035359 - AluSq SINE Alu -23 290 1 376 223 182 104 chr3 32001799 32001934 -186035224 - MIR SINE MIR -95 167 7 1720 167 20 29 chr3 32002312 32002451 -186034707 + AluSx SINE Alu 1 140 -172 2402 66 0 0 chr3 32002451 32002739 -186034419 + AluY SINE Alu 21 308 -3 1720 167 20 29 chr3 32002739 32002905 -186034253 + AluSx SINE Alu 140 303 -9 21 36 0 0 chr3 32003113 32003141 -186034017 + AT_rich Low_complexity Low_complexity 1 28 0 309 307 83 73 chr3 32003299 32003491 -186033667 + MER91A DNA MER1_type 2 195 -1 1785 142 0 50 chr3 32003500 32003818 -186033340 - AluJo SINE Alu -10 302 1 33 56 0 0 chr3 32003837 32003891 -186033267 + AT_rich Low_complexity Low_complexity 1 54 0 576 195 0 31 chr3 32003982 32004110 -186033048 + FLAM_A SINE Alu 13 136 -6 375 232 246 7 chr3 32004114 32004252 -186032906 + MER5A DNA MER1_type 19 189 0 240 330 0 0 chr3 32005271 32005359 -186031799 - L1MC5 LINE L1 -71 7890 7803 1759 154 29 4 chr3 32005442 32005722 -186031436 + L1MA3 LINE L1 17 303 -7262 7312 193 43 29 chr3 32005831 32008592 -186028566 + L1MA3 LINE L1 3709 6429 -1295 1466 171 57 18 chr3 32008592 32008873 -186028285 + AluSx SINE Alu 1 292 -20 7312 193 43 29 chr3 32008873 32009602 -186027556 + L1MA3 LINE L1 6429 7445 -279 183 42 0 0 chr3 32009602 32009626 -186027532 + (TA)n Simple_repeat Simple_repeat 2 25 0 7312 193 43 29 chr3 32009626 32009904 -186027254 + L1MA3 LINE L1 7445 7717 -7 180 77 0 0 chr3 32010060 32010086 -186027072 + (TAA)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr3 32010266 32010304 -186026854 + AT_rich Low_complexity Low_complexity 1 38 0 605 213 122 6 chr3 32010651 32010815 -186026343 - MER5A DNA MER1_type 0 189 7 1527 142 35 91 chr3 32010818 32011136 -186026022 - AluJo SINE Alu -12 300 1 1526 254 80 3 chr3 32012085 32012474 -186024684 + MLT1G1 LTR MaLR 167 585 -10 603 184 0 0 chr3 32012629 32012732 -186024426 + AluJb SINE Alu 194 296 -16 1622 179 7 49 chr3 32013064 32013372 -186023786 + AluJo SINE Alu 1 295 -17 1040 324 135 4 chr3 32013914 32014387 -186022771 + L3 LINE CR1 1028 1562 -15 1804 147 28 7 chr3 32015196 32015481 -186021677 + AluSx SINE Alu 1 291 -21 849 296 75 13 chr3 32016531 32016916 -186020242 + LTR16B LTR ERVL 56 464 0 5268 139 51 68 chr3 32016935 32017289 -186019869 + Ricksha_a DNA DNA 1 360 -2901 330 183 70 0 chr3 32017289 32017360 -186019798 - FRAM/FAM SINE Alu -92 83 8 5268 139 51 68 chr3 32017360 32018172 -186018986 + Ricksha_a DNA DNA 360 1177 -14 458 123 49 0 chr3 32018437 32018518 -186018640 + L1MB8 LINE L1 6089 6173 -5 1883 152 10 20 chr3 32018625 32018928 -186018230 + AluSx SINE Alu 1 300 -12 521 307 40 31 chr3 32019436 32019664 -186017494 - MIR SINE MIR -2 260 31 1668 186 158 47 chr3 32020135 32020623 -186016535 - MLT1F LTR MaLR 0 542 1 259 325 52 0 chr3 32020667 32020744 -186016414 + MER91C DNA MER1_type 58 138 -2 867 269 53 16 chr3 32021520 32021765 -186015393 + MIR SINE MIR 6 259 -3 1127 238 77 62 chr3 32022001 32022530 -186014628 - L2 LINE L2 -265 3007 2475 388 206 165 0 chr3 32022543 32022640 -186014518 + L2 LINE L2 3200 3312 -1 30 69 0 0 chr3 32023633 32023691 -186013467 + GC_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr3 32023796 32023825 -186013333 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 32023910 32023938 -186013220 + GC_rich Low_complexity Low_complexity 1 28 0 2159 133 0 3 chr3 32024406 32024707 -186012451 - AluJb SINE Alu -12 300 1 2130 92 11 0 chr3 32026053 32026334 -186010824 + AluSp SINE Alu 16 299 -14 21 95 0 0 chr3 32026459 32026522 -186010636 + AT_rich Low_complexity Low_complexity 1 63 0 890 202 6 27 chr3 32026571 32026754 -186010404 + AluJo SINE Alu 34 212 -100 191 330 41 21 chr3 32026828 32026925 -186010233 - L2 LINE L2 -1 3271 3173 1217 176 30 102 chr3 32027015 32027157 -186010001 + AluJb SINE Alu 1 113 -199 2384 69 0 47 chr3 32027157 32027477 -186009681 + AluY SINE Alu 1 305 -6 1217 176 30 102 chr3 32027477 32027629 -186009529 + AluJb SINE Alu 113 274 -38 244 325 305 0 chr3 32028265 32028416 -186008742 + MIR SINE MIR 50 246 -16 2330 109 0 0 chr3 32030584 32030896 -186006262 - AluSx SINE Alu 0 312 1 1423 179 10 76 chr3 32031468 32031770 -186005388 + AluJo SINE Alu 1 282 -30 1996 245 190 18 chr3 32031892 32032720 -186004438 - L2 LINE L2 -19 3294 2258 26 0 0 0 chr3 32032739 32032765 -186004393 + AT_rich Low_complexity Low_complexity 1 26 0 211 200 92 46 chr3 32033937 32034002 -186003156 + L2 LINE L2 3238 3305 -8 1423 180 27 14 chr3 32034128 32034423 -186002735 + L1MB7 LINE L1 5867 6165 -19 1739 161 42 25 chr3 32034759 32035113 -186002045 + MER46B DNA MER2_type 2 236 0 25 65 0 0 chr3 32036010 32036056 -186001102 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr3 32036110 32036133 -186001025 + AT_rich Low_complexity Low_complexity 1 23 0 663 153 181 0 chr3 32036486 32036630 -186000528 - MIR SINE MIR -3 259 90 1133 255 177 60 chr3 32037535 32038695 -185998463 + L2 LINE L2 2006 3310 -3 220 312 21 32 chr3 32040109 32040202 -185996956 + MIR SINE MIR 137 228 -34 1770 176 7 183 chr3 32040602 32041274 -185995884 - MLT2B3 LTR ERVL 0 554 1 505 190 141 0 chr3 32041401 32041543 -185995615 - MLT1F1 LTR MaLR 0 542 381 300 171 91 11 chr3 32041553 32041641 -185995517 + L1MA9 LINE L1 6218 6312 0 1161 244 34 93 chr3 32041642 32042081 -185995077 - MLT1F1 LTR MaLR -154 413 1 652 168 8 32 chr3 32042546 32042671 -185994487 + FLAM_C SINE Alu 2 123 -10 4715 49 3 23 chr3 32042807 32043416 -185993742 - L1PA5 LINE L1 -4 6150 5554 326 263 136 25 chr3 32043473 32043591 -185993567 + MIR3 SINE MIR 38 168 -40 25 31 0 0 chr3 32043663 32043695 -185993463 + AT_rich Low_complexity Low_complexity 1 32 0 875 96 103 0 chr3 32043696 32043832 -185993326 - L1MA2 LINE L1 -11 6293 6144 2673 122 39 2 chr3 32043833 32044244 -185992914 + MSTA LTR MaLR 3 428 0 1335 143 104 11 chr3 32044244 32044531 -185992627 - L1MA3 LINE L1 -49 6256 5943 * 19788 143 46 49 chr3 32044526 32045330 -185991828 - L1M4 LINE L1 -2952 4613 3808 2206 112 7 0 chr3 32045330 32045626 -185991532 - AluSc SINE Alu -11 298 1 19788 143 46 49 chr3 32045626 32046076 -185991082 - L1M4 LINE L1 -3757 3808 3358 1826 179 0 3 chr3 32046076 32046373 -185990785 - AluJb SINE Alu -16 296 1 19788 143 46 49 chr3 32046373 32049413 -185987745 - L1M4 LINE L1 -4207 3358 225 2110 117 57 23 chr3 32049413 32049765 -185987393 - THE1B LTR MaLR 0 364 1 19788 143 46 49 chr3 32049765 32049983 -185987175 - L1M4 LINE L1 -7340 225 8 25 0 0 0 chr3 32050093 32050118 -185987040 + AT_rich Low_complexity Low_complexity 1 25 0 875 132 0 0 chr3 32050126 32050247 -185986911 - AluJb SINE Alu -32 280 160 2110 114 35 67 chr3 32050395 32050771 -185986387 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr3 32051132 32051163 -185985995 + AT_rich Low_complexity Low_complexity 1 31 0 180 77 0 0 chr3 32051178 32051204 -185985954 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 326 256 0 12 chr3 32051386 32051472 -185985686 - MIR SINE MIR -14 248 164 1911 134 62 7 chr3 32051492 32051784 -185985374 + AluSx SINE Alu 3 310 -2 728 145 357 21 chr3 32052319 32052560 -185984598 - L1MB8 LINE L1 -5 6173 5852 403 217 17 100 chr3 32052621 32052801 -185984357 - L1M4b LINE L1 -5634 1225 1061 1089 173 51 101 chr3 32052808 32053236 -185983922 - MLT1C LTR MaLR -1 466 3 537 332 63 10 chr3 32053501 32053802 -185983356 - L1M4b LINE L1 -6542 317 1 247 235 35 96 chr3 32054535 32054650 -185982508 - MIR3 SINE MIR -18 190 83 22 0 0 0 chr3 32054849 32054871 -185982287 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 32054950 32054972 -185982186 + AT_rich Low_complexity Low_complexity 1 22 0 320 216 72 84 chr3 32055039 32055206 -185981952 - MIR SINE MIR -6 256 92 942 219 54 0 chr3 32055397 32055621 -185981537 + MER46A DNA MER2_type 1 236 0 278 345 104 49 chr3 32055650 32055937 -185981221 + L2 LINE L2 2970 3272 0 2162 115 3 0 chr3 32058006 32058311 -185978847 - AluSx SINE Alu -6 306 1 3507 57 7 0 chr3 32058616 32059071 -185978087 - L1PA5 LINE L1 -1 6153 5696 1760 162 10 33 chr3 32060046 32060348 -185976810 - AluJb SINE Alu -15 297 3 986 204 0 0 chr3 32060774 32060946 -185976212 + FAM SINE Alu 1 172 -3 664 192 23 8 chr3 32062487 32062617 -185974541 - FLAM_A SINE Alu 0 133 2 2539 74 0 0 chr3 32063560 32063871 -185973287 + AluY SINE Alu 1 311 0 244 250 0 0 chr3 32064403 32064447 -185972711 + Alu SINE Alu 141 184 -116 490 115 103 11 chr3 32064447 32064534 -185972624 + L1PA8 LINE L1 6078 6172 0 25 83 0 0 chr3 32065189 32065249 -185971909 + AT_rich Low_complexity Low_complexity 1 60 0 1432 172 84 0 chr3 32065491 32065741 -185971417 + AluJb SINE Alu 13 283 -29 1860 155 10 16 chr3 32065769 32066079 -185971079 + AluJb SINE Alu 1 308 -4 4526 159 31 42 chr3 32066260 32067233 -185969925 - L1MA9 LINE L1 -4 6308 5339 1483 194 17 24 chr3 32067233 32067526 -185969632 - AluJo SINE Alu -19 293 3 4526 159 31 42 chr3 32067526 32067860 -185969298 - L1MA9 LINE L1 -973 5339 5003 434 260 158 25 chr3 32068940 32069136 -185968022 - MIR SINE MIR 0 262 41 258 143 0 0 chr3 32069283 32069332 -185967826 + (A)n Simple_repeat Simple_repeat 1 49 0 181 301 157 53 chr3 32069804 32070219 -185966939 - L2 LINE L2 -1297 2017 1560 7224 35 5 0 chr3 32070669 32071598 -185965560 - L1P LINE L1 -3570 2576 1643 21428 30 2 0 chr3 32071598 32074317 -185962841 + L1P LINE L1 2584 5307 -839 189 0 0 0 chr3 32075101 32075122 -185962036 + (T)n Simple_repeat Simple_repeat 1 21 0 3690 95 147 132 chr3 32076109 32076919 -185960239 - LTR12 LTR ERV1 0 826 5 1918 192 75 24 chr3 32076935 32077508 -185959650 - pTR5 LTR ERV1 -1094 1344 743 1642 218 71 51 chr3 32077567 32077619 -185959539 - MLT2B1 LTR ERVL 0 520 470 189 0 0 0 chr3 32077619 32077640 -185959518 + (GA)n Simple_repeat Simple_repeat 2 22 0 1642 218 71 51 chr3 32077640 32078097 -185959061 - MLT2B1 LTR ERVL -50 470 1 771 159 115 50 chr3 32078143 32078206 -185958952 + MER6B DNA MER2_type 2 59 -806 2351 44 44 14 chr3 32078206 32078502 -185958656 + AluY SINE Alu 1 305 -6 771 159 115 50 chr3 32078502 32078620 -185958538 + MER6B DNA MER2_type 59 195 -15 745 70 0 20 chr3 32078754 32078854 -185958304 + HY3 scRNA scRNA 1 98 -3 201 138 0 0 chr3 32078854 32078883 -185958275 + (TATG)n Simple_repeat Simple_repeat 3 31 0 206 281 31 31 chr3 32079227 32079291 -185957867 + polypyrimidine Low_complexity Low_complexity 2 65 0 1533 142 36 44 chr3 32079340 32079614 -185957544 - AluJb SINE Alu -40 272 1 306 283 42 60 chr3 32079675 32079841 -185957317 - L1ME LINE L1 -390 5731 5569 189 300 0 0 chr3 32079929 32079979 -185957179 - MIR SINE MIR -73 189 140 * 457 299 148 42 chr3 32079978 32080541 -185956617 - L2 LINE L2 -10 3303 2668 597 75 0 0 chr3 32081061 32081141 -185956017 - AluY SINE Alu -230 80 1 227 200 20 0 chr3 32081195 32081245 -185955913 - MIR SINE MIR -30 232 182 420 319 93 0 chr3 32081258 32081462 -185955696 - MIR SINE MIR -38 224 2 1563 139 41 30 chr3 32082050 32082316 -185954842 - AluJo SINE Alu -19 293 25 2185 113 0 7 chr3 32083680 32083981 -185953177 - AluSx SINE Alu -13 299 1 183 352 68 0 chr3 32084174 32084262 -185952896 - L2 LINE L2 -8 3264 3171 311 309 36 9 chr3 32084542 32084652 -185952506 + L1ME LINE L1 5320 5432 -730 247 357 16 0 chr3 32085526 32085655 -185951503 + CT-rich Low_complexity Low_complexity 2 132 0 203 274 0 32 chr3 32089599 32089661 -185947497 + L2 LINE L2 3231 3290 -23 411 139 0 38 chr3 32089663 32089681 -185947477 - AluJ/FRAM SINE Alu -6 306 289 956 207 13 17 chr3 32089681 32089913 -185947245 - L1MB7 LINE L1 -9 6175 5945 411 139 0 38 chr3 32089913 32089973 -185947185 - AluJ/FRAM SINE Alu -23 289 231 343 156 300 11 chr3 32089973 32090063 -185947095 - FLAM_C SINE Alu -2 131 16 815 121 18 36 chr3 32090068 32090233 -185946925 - L1MB7 LINE L1 -211 5967 5806 611 153 89 25 chr3 32090340 32090497 -185946661 - L1MB7 LINE L1 -361 5823 5657 22 0 0 0 chr3 32092876 32092898 -185944260 + AT_rich Low_complexity Low_complexity 1 22 0 206 266 0 47 chr3 32093026 32093090 -185944068 + L2 LINE L2 3207 3267 -46 569 263 93 76 chr3 32093299 32093389 -185943769 + MIR SINE MIR 5 92 -170 1719 151 55 17 chr3 32093389 32093680 -185943478 - AluJo SINE Alu -10 302 1 569 263 93 76 chr3 32093680 32093825 -185943333 + MIR SINE MIR 92 244 -18 244 256 13 0 chr3 32094731 32094809 -185942349 + HsTC2 DNA Tc2 1 79 -1819 22 0 0 0 chr3 32094945 32094967 -185942191 + AT_rich Low_complexity Low_complexity 1 22 0 1424 197 27 24 chr3 32096247 32096542 -185940616 - AluJo SINE Alu -6 296 1 384 262 142 62 chr3 32096810 32097035 -185940123 - HAL1 LINE L1 -84 2423 2181 201 310 42 14 chr3 32097982 32098053 -185939105 - MIR3 SINE MIR -26 182 110 24 32 0 0 chr3 32100552 32100583 -185936575 + AT_rich Low_complexity Low_complexity 1 31 0 1038 172 86 75 chr3 32103282 32103625 -185933533 - L1MB7 LINE L1 -8 6176 5836 1689 108 0 0 chr3 32103625 32103848 -185933310 - AluSq SINE Alu -15 298 76 1038 172 86 75 chr3 32103848 32103874 -185933284 - L1MB7 LINE L1 -348 5836 5812 3226 153 73 28 chr3 32103879 32104349 -185932809 - L1MA4 LINE L1 -2 6169 5610 2026 140 45 25 chr3 32104349 32104706 -185932452 + THE1B LTR MaLR 1 364 0 3226 153 73 28 chr3 32104706 32105007 -185932151 - L1MA4 LINE L1 -561 5610 5324 1072 144 18 6 chr3 32105015 32105175 -185931983 - AluSg/x SINE Alu -16 294 130 2142 132 13 0 chr3 32105175 32105478 -185931680 - AluSx SINE Alu -5 307 1 3979 179 44 32 chr3 32105488 32106502 -185930656 - L1MA4 LINE L1 -825 5321 4296 3441 197 26 33 chr3 32106732 32107597 -185929561 - L1 LINE L1 -1119 5027 4163 3071 194 58 22 chr3 32107597 32108726 -185928432 - L1MC2 LINE L1 -343 5823 4135 2137 128 3 0 chr3 32108834 32109138 -185928020 - AluSx SINE Alu -7 305 1 428 200 0 67 chr3 32109409 32109499 -185927659 - AluS SINE Alu -229 84 1 565 244 14 156 chr3 32112131 32112253 -185924905 - MIR SINE MIR -6 256 193 1376 98 0 10 chr3 32112253 32112456 -185924702 - L1PB1 LINE L1 -1 6150 5950 565 244 14 156 chr3 32112456 32112608 -185924550 - MIR SINE MIR -69 193 21 850 201 111 5 chr3 32112665 32112854 -185924304 + MER3 DNA MER1_type 1 209 0 196 300 88 25 chr3 32113248 32113328 -185923830 - MIR SINE MIR -84 124 40 305 349 104 52 chr3 32113429 32113460 -185923698 + L3 LINE CR1 1168 1196 -381 2334 101 0 3 chr3 32113460 32113767 -185923391 + AluSq SINE Alu 1 306 -7 305 349 104 52 chr3 32113767 32114082 -185923076 + L3 LINE CR1 1196 1532 -45 3147 209 50 71 chr3 32114423 32115271 -185921887 - MER21B LTR ERV1 -30 833 4 369 330 95 23 chr3 32117589 32117810 -185919348 + MIR SINE MIR 20 256 -6 1679 167 3 24 chr3 32118078 32118365 -185918793 - AluJo SINE Alu -31 281 1 1532 214 62 8 chr3 32118521 32118876 -185918282 + MLT1A2 LTR MaLR 1 374 0 197 194 0 119 chr3 32118990 32119057 -185918101 - L2 LINE L2 0 3272 3214 1249 286 49 22 chr3 32119749 32120408 -185916750 + LTR51 LTR ERV1 1 851 -72 22 35 0 0 chr3 32120743 32120772 -185916386 + AT_rich Low_complexity Low_complexity 1 29 0 319 256 47 0 chr3 32121932 32122018 -185915140 + L2 LINE L2 3220 3309 -4 30 27 0 0 chr3 32122985 32123022 -185914136 + AT_rich Low_complexity Low_complexity 1 37 0 200 259 24 47 chr3 32124496 32124581 -185912577 + MIR3 SINE MIR 123 205 -3 1554 154 109 27 chr3 32124585 32124923 -185912235 + MER47A DNA MER2_type 1 366 0 2323 90 3 0 chr3 32124962 32125261 -185911897 - AluSx SINE Alu -12 300 1 252 172 0 0 chr3 32127310 32127368 -185909790 - L1M4 LINE L1 -3834 2312 2255 1088 236 86 72 chr3 32127560 32128179 -185908979 - L2 LINE L2 -6 3307 2677 193 338 15 0 chr3 32128248 32128316 -185908842 + MIR3 SINE MIR 133 201 -7 1467 171 80 11 chr3 32128451 32128726 -185908432 - AluJb SINE Alu -16 296 3 405 0 0 0 chr3 32128974 32129019 -185908139 + (TG)n Simple_repeat Simple_repeat 1 45 0 283 392 20 14 chr3 32130109 32130257 -185906901 - MIR SINE MIR -94 168 20 435 19 0 0 chr3 32130436 32130489 -185906669 - MADE1 DNA Mariner 0 80 28 1771 157 3 20 chr3 32131840 32132133 -185905025 - AluJo SINE Alu -24 288 1 32 0 0 0 chr3 32132416 32132448 -185904710 + AT_rich Low_complexity Low_complexity 1 32 0 2008 140 3 3 chr3 32133157 32133457 -185903701 + AluJb SINE Alu 1 300 -12 476 341 115 69 chr3 32133633 32134313 -185902845 - L2 LINE L2 0 3272 2568 4557 206 102 34 chr3 32134536 32135846 -185901312 + L1MC4a LINE L1 6404 7803 -5 185 333 16 56 chr3 32136320 32136446 -185900712 - MIR SINE MIR -110 152 32 418 261 183 7 chr3 32137546 32137699 -185899459 - MIR SINE MIR 0 262 83 1175 171 50 0 chr3 32138486 32138685 -185898473 - AluJb SINE Alu -15 297 89 2029 127 14 0 chr3 32139592 32139884 -185897274 + AluSx SINE Alu 1 296 -16 1093 201 149 19 chr3 32139949 32140257 -185896901 - L1ME3A LINE L1 -80 6090 5743 551 204 24 108 chr3 32140927 32141094 -185896064 + AluJo SINE Alu 58 210 -102 24 0 0 0 chr3 32141116 32141140 -185896018 + AT_rich Low_complexity Low_complexity 1 24 0 202 196 65 0 chr3 32141146 32141192 -185895966 + L2 LINE L2 3224 3272 0 4924 54 2 0 chr3 32143403 32144011 -185893147 + L1PA6 LINE L1 5543 6151 -3 216 0 0 0 chr3 32144144 32144168 -185892990 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 367 22 0 0 chr3 32144270 32144316 -185892842 + L1PA6 LINE L1 6107 6152 -2 35609 43 2 3 chr3 32145543 32149962 -185887196 + L1P LINE L1 3 4418 -1728 752 189 24 0 chr3 32150062 32150226 -185886932 - L1P LINE L1 -844 5302 5135 362 316 47 23 chr3 32150545 32150716 -185886442 + L2 LINE L2 3138 3312 -1 33 0 0 0 chr3 32151314 32151347 -185885811 + AT_rich Low_complexity Low_complexity 1 33 0 197 321 0 0 chr3 32152081 32152137 -185885021 + MIR SINE MIR 49 104 -158 22 35 0 0 chr3 32152415 32152444 -185884714 + AT_rich Low_complexity Low_complexity 1 29 0 1694 166 28 7 chr3 32152923 32153207 -185883951 + AluJb SINE Alu 1 290 -22 186 103 0 0 chr3 32153631 32153660 -185883498 + (CA)n Simple_repeat Simple_repeat 2 30 0 300 295 160 19 chr3 32153879 32154035 -185883123 + MLT1I LTR MaLR 44 221 -188 270 232 64 56 chr3 32154036 32154161 -185882997 + MLT1J2 LTR MaLR 272 397 -53 * 410 148 0 74 chr3 32154159 32154240 -185882918 - Charlie3 DNA MER1_type -8 2702 2628 305 209 15 0 chr3 32154243 32154310 -185882848 + MLT1I LTR MaLR 340 407 -2 7304 31 10 0 chr3 32155670 32157307 -185879851 - L1PA3 LINE L1 -3 6152 4503 443 151 32 54 chr3 32158042 32158135 -185879023 - Tigger4(Zombi) DNA MER2_type 0 2731 2641 236 288 72 36 chr3 32158506 32158617 -185878541 - MIR SINE MIR -62 146 32 4925 226 35 13 chr3 32158983 32160251 -185876907 + L1P LINE L1 2437 3731 -2415 5290 136 19 1 chr3 32160430 32161263 -185875895 + L1PB2 LINE L1 5302 6149 -2 429 365 23 8 chr3 32161501 32161764 -185875394 + L1PA12 LINE L1 2 268 -7313 2569 247 10 22 chr3 32162326 32163019 -185874139 + L1P LINE L1 1730 2414 -3732 1714 187 0 17 chr3 32165171 32165465 -185871693 - AluJb SINE Alu -23 289 1 307 313 30 0 chr3 32165872 32165971 -185871187 + L1ME3 LINE L1 6004 6105 -57 2224 109 3 0 chr3 32165972 32166265 -185870893 + AluSx SINE Alu 3 296 -16 258 349 143 0 chr3 32167236 32167362 -185869796 + MIR SINE MIR 118 261 -1 3210 189 118 24 chr3 32167656 32168408 -185868750 - MER21B LTR ERV1 -24 839 17 3755 170 81 1 chr3 32168858 32169564 -185867594 - L1PA16 LINE L1 -2 6164 5403 * 6253 193 14 7 chr3 32169562 32170814 -185866344 - L1PA16 LINE L1 -1192 4954 3694 33000 34 4 0 chr3 32170983 32175687 -185861471 - L1PA3 LINE L1 -84 6071 1356 278 207 164 69 chr3 32177057 32177173 -185859985 - MER94 DNA DNA -3 131 5 556 203 32 16 chr3 32178150 32178273 -185858885 - FLAM_A SINE Alu -4 138 14 452 273 200 19 chr3 32180986 32181191 -185855967 + MIR SINE MIR 21 262 0 216 0 0 0 chr3 32181590 32181614 -185855544 + (A)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr3 32181674 32181703 -185855455 + AT_rich Low_complexity Low_complexity 1 29 0 294 254 127 26 chr3 32181974 32182163 -185854995 - MER113 DNA MER1_type? -313 208 1 213 77 0 51 chr3 32182573 32182597 -185854561 + (TTTA)n Simple_repeat Simple_repeat 3 26 -13 3718 16 0 0 chr3 32182597 32183024 -185854134 - L1PA2 LINE L1 0 6155 5729 213 77 0 51 chr3 32183024 32183038 -185854120 + (TTTA)n Simple_repeat Simple_repeat 26 39 0 384 316 198 4 chr3 32183075 32183312 -185853846 - L2 LINE L2 -218 3095 2813 1469 180 10 27 chr3 32183583 32183878 -185853280 - AluJo SINE Alu -22 290 1 2181 119 3 0 chr3 32185532 32185834 -185851324 - AluSx SINE Alu -9 303 1 194 346 97 30 chr3 32186264 32186501 -185850657 - L2 LINE L2 -467 2847 2595 364 359 65 0 chr3 32186599 32186769 -185850389 - L2 LINE L2 -955 2359 2179 819 224 42 0 chr3 32187350 32187515 -185849643 - AluJo/FRAM SINE Alu -7 305 134 1886 157 0 3 chr3 32187516 32187816 -185849342 - AluJb SINE Alu -13 299 1 2158 105 10 7 chr3 32187888 32188192 -185848966 - AluSg SINE Alu -5 305 1 1014 181 6 0 chr3 32188279 32188450 -185848708 - AluSg/x SINE Alu -8 302 131 1746 168 83 6 chr3 32189473 32189812 -185847346 - MLT1A1 LTR MaLR 0 365 1 28 29 0 0 chr3 32192010 32192045 -185845113 + AT_rich Low_complexity Low_complexity 1 35 0 2387 88 10 0 chr3 32192074 32192380 -185844778 + AluSg SINE Alu 1 309 -1 1001 219 55 52 chr3 32193466 32194175 -185842983 + LTR1B LTR ERV1 1 824 -2 518 269 35 51 chr3 32194338 32194535 -185842623 - MIR SINE MIR -1 261 68 28 29 0 0 chr3 32194920 32194955 -185842203 + AT_rich Low_complexity Low_complexity 1 35 0 191 196 174 0 chr3 32195613 32195659 -185841499 - L2 LINE L2 0 3272 3219 472 242 18 147 chr3 32195724 32195959 -185841199 + MIR SINE MIR 19 219 -43 305 315 195 31 chr3 32196124 32196636 -185840522 - L2 LINE L2 -205 3067 2454 285 350 114 24 chr3 32196650 32196746 -185840412 - L2 LINE L2 -2940 374 288 922 222 5 5 chr3 32196746 32196935 -185840223 + MER5A DNA MER1_type 1 189 0 285 350 114 24 chr3 32196935 32197031 -185840127 - L2 LINE L2 -3026 288 202 1291 223 75 6 chr3 32197031 32197349 -185839809 + MER58B DNA MER1_type 2 341 0 285 350 114 24 chr3 32197349 32197444 -185839714 - L2 LINE L2 -3112 202 60 226 284 11 57 chr3 32197810 32197898 -185839260 + L1ME LINE L1 2 85 -5985 443 181 0 67 chr3 32199653 32199846 -185837312 + (TA)n Simple_repeat Simple_repeat 1 180 0 822 213 63 86 chr3 32199888 32200156 -185837002 + MIR SINE MIR 1 262 0 901 252 56 46 chr3 32200760 32201133 -185836025 - L1ME3A LINE L1 -51 6119 5743 2291 106 0 0 chr3 32201380 32201683 -185835475 + AluSx SINE Alu 1 303 -9 2062 172 22 101 chr3 32202302 32203034 -185834124 - MER44D DNA MER2_type -3 602 2 779 168 0 0 chr3 32203689 32203820 -185833338 - FLAM_A SINE Alu -2 131 1 315 0 0 0 chr3 32203959 32203994 -185833164 + (CA)n Simple_repeat Simple_repeat 2 36 0 212 200 18 0 chr3 32204121 32204176 -185832982 + CT-rich Low_complexity Low_complexity 2 57 0 758 317 124 20 chr3 32204177 32204619 -185832539 - L2 LINE L2 -1 3312 2825 312 275 127 65 chr3 32204689 32204918 -185832240 - MIR SINE MIR -15 247 5 986 150 0 7 chr3 32205046 32205199 -185831959 - AluSg/x SINE Alu -26 284 133 2331 88 13 0 chr3 32205200 32205505 -185831653 - AluSx SINE Alu -3 309 1 2003 111 56 10 chr3 32206890 32207178 -185829980 + AluSx SINE Alu 1 301 -11 352 325 100 0 chr3 32208542 32208702 -185828456 + MIR SINE MIR 49 224 -38 229 294 59 0 chr3 32208722 32208807 -185828351 - MIR3 SINE MIR -116 92 3 408 281 101 30 chr3 32209641 32209840 -185827318 + MIR SINE MIR 1 213 -49 522 103 0 0 chr3 32210964 32211042 -185826116 + (TG)n Simple_repeat Simple_repeat 2 79 0 1761 210 32 41 chr3 32213534 32214000 -185823158 - MLT1C LTR MaLR 0 467 6 226 356 11 0 chr3 32215580 32215667 -185821491 + MIR SINE MIR 60 147 -115 851 211 23 0 chr3 32216623 32216794 -185820364 + MER5A DNA MER1_type 1 175 -14 1574 50 0 0 chr3 32216913 32217112 -185820046 + L1PA4 LINE L1 5954 6152 -3 399 344 131 26 chr3 32217341 32217760 -185819398 + L2 LINE L2 2810 3272 0 905 129 0 0 chr3 32218339 32218471 -185818687 - MSTA LTR MaLR -296 132 1 1673 203 58 0 chr3 32218554 32218880 -185818278 + MLT1A1 LTR MaLR 19 363 -2 615 225 88 50 chr3 32219261 32219501 -185817657 - MER112 DNA MER1_type -4 256 8 4016 48 2 2 chr3 32219651 32220151 -185817007 - L1PA7 LINE L1 -1 6153 5654 4129 185 13 14 chr3 32220151 32221027 -185816131 - L1P LINE L1 -4190 1956 1082 226 115 33 16 chr3 32221221 32221282 -185815876 + C-rich Low_complexity Low_complexity 1 62 0 12513 92 18 31 chr3 32221314 32223280 -185813878 - L1P3 LINE L1 -4483 1978 11 584 81 0 23 chr3 32223280 32223366 -185813792 - AluSq/x SINE Alu -166 146 63 1528 185 0 50 chr3 32223742 32224044 -185813114 - AluJo SINE Alu -15 297 11 185 167 0 0 chr3 32224309 32224339 -185812819 + MER5B DNA MER1_type 25 54 -124 432 341 8 0 chr3 32224437 32224560 -185812598 + L2 LINE L2 3149 3272 0 332 271 47 54 chr3 32224928 32225057 -185812101 + L2 LINE L2 3176 3303 -10 224 337 0 24 chr3 32225111 32225194 -185811964 + MIR3 SINE MIR 127 207 -1 246 343 148 50 chr3 32225679 32225956 -185811202 + L3 LINE CR1 1230 1533 -44 2197 134 40 13 chr3 32226092 32226255 -185810903 + L1PB4 LINE L1 5699 5856 -300 1776 98 8 4 chr3 32226255 32226491 -185810667 - AluSq SINE Alu -76 237 1 2197 134 40 13 chr3 32226491 32226699 -185810459 + L1PB4 LINE L1 5856 6080 -76 36 0 0 0 chr3 32226877 32226913 -185810245 + AT_rich Low_complexity Low_complexity 1 36 0 208 304 62 36 chr3 32227004 32227116 -185810042 - L2 LINE L2 -178 3135 3021 435 231 138 50 chr3 32227118 32227278 -185809880 - Charlie8 DNA MER1_type -2152 265 92 676 264 205 23 chr3 32227379 32227682 -185809476 + L3 LINE CR1 1216 1573 -4 474 206 109 59 chr3 32229770 32230008 -185807150 - L1MC5 LINE L1 -48 7913 7664 294 315 34 55 chr3 32230044 32230190 -185806968 + MIR3 SINE MIR 49 191 -17 1357 190 125 31 chr3 32230196 32230517 -185806641 + L1MCa LINE L1 1 351 -6075 * 4728 160 56 22 chr3 32230513 32231918 -185805240 + L1MCa LINE L1 696 2241 -4185 1336 195 0 38 chr3 32231922 32232189 -185804969 + AluJb SINE Alu 1 257 -55 5347 246 44 17 chr3 32232189 32233477 -185803681 + L1MCa LINE L1 2244 3611 -2815 1174 168 188 8 chr3 32233477 32233733 -185803425 + AluJb SINE Alu 1 302 0 5347 246 44 17 chr3 32233733 32234414 -185802744 + L1MCa LINE L1 3611 4272 -2154 859 249 25 8 chr3 32234430 32234667 -185802491 + L1MCa LINE L1 4393 4633 -1793 1015 166 0 0 chr3 32234673 32234830 -185802328 - AluSg/x SINE Alu -19 291 135 257 318 30 0 chr3 32234936 32235002 -185802156 + MIR SINE MIR 12 79 -183 234 258 61 0 chr3 32235025 32235091 -185802067 - L1M4 LINE L1 -1911 4235 4166 739 190 51 0 chr3 32235125 32235283 -185801875 + MIR SINE MIR 97 262 0 1624 191 33 7 chr3 32235302 32235606 -185801552 - AluJo SINE Alu 0 312 1 274 315 98 71 chr3 32235626 32235810 -185801348 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr3 32237250 32237271 -185799887 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr3 32237616 32237686 -185799472 + AT_rich Low_complexity Low_complexity 1 70 0 330 276 0 35 chr3 32237899 32237986 -185799172 - L2 LINE L2 -1 3312 3229 24 91 0 0 chr3 32239332 32239398 -185797760 + AT_rich Low_complexity Low_complexity 1 66 0 235 256 22 78 chr3 32240115 32240205 -185796953 - MIR SINE MIR -108 154 70 1990 221 58 2 chr3 32240207 32240618 -185796540 - LTR53 LTR ERVL -1 518 85 2017 155 9 15 chr3 32240629 32240965 -185796193 - MER1B DNA MER1_type -5 334 1 505 191 12 0 chr3 32240966 32241050 -185796108 - LTR53 LTR ERVL -434 85 1 458 207 0 0 chr3 32241368 32241455 -185795703 + AluJ/FRAM SINE Alu 214 300 -12 480 354 45 3 chr3 32241809 32242102 -185795056 + L2 LINE L2 2770 3082 -231 585 232 59 38 chr3 32242123 32242312 -185794846 + MIR SINE MIR 59 250 -12 196 281 141 25 chr3 32243066 32243187 -185793971 - L2 LINE L2 -460 2854 2720 31 0 0 0 chr3 32244742 32244773 -185792385 + AT_rich Low_complexity Low_complexity 1 31 0 2127 122 0 13 chr3 32244775 32245078 -185792080 + AluSg SINE Alu 1 299 -11 800 150 0 0 chr3 32245080 32245193 -185791965 - AluJo/FLAM SINE Alu -199 113 1 2318 53 0 60 chr3 32246024 32246343 -185790815 + AluY SINE Alu 1 300 -11 22 35 0 0 chr3 32246586 32246615 -185790543 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 32247073 32247097 -185790061 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr3 32247677 32247726 -185789432 + AT_rich Low_complexity Low_complexity 1 49 0 1436 339 82 57 chr3 32248761 32250389 -185786769 - HERVL LTR ERVL -310 5344 3676 231 189 0 19 chr3 32250765 32250818 -185786340 + FAM SINE Alu 124 175 0 309 282 106 69 chr3 32250852 32251097 -185786061 - HERVL LTR ERVL -2539 3115 2862 479 291 134 49 chr3 32251240 32251584 -185785574 - HERVL LTR ERVL -2804 2681 2309 628 269 30 8 chr3 32251591 32251775 -185785383 - HERVL LTR ERVL -2939 2057 1889 370 261 114 23 chr3 32251893 32252069 -185785089 + L2 LINE L2 3118 3309 -4 253 200 0 0 chr3 32252133 32252188 -185784970 + HsTC2 DNA Tc2 3 57 -1841 1021 244 109 20 chr3 32252243 32252645 -185784513 + HsTC2 DNA Tc2 1287 1900 0 296 363 12 0 chr3 32252662 32252742 -185784416 - MER91A DNA MER1_type 0 196 116 370 261 114 23 chr3 32254635 32254811 -185782347 + L2 LINE L2 3118 3309 -4 253 200 0 0 chr3 32254875 32254930 -185782228 + HsTC2 DNA Tc2 3 57 -1841 1068 242 110 18 chr3 32254985 32255386 -185781772 + HsTC2 DNA Tc2 1287 1900 0 296 363 12 0 chr3 32255403 32255483 -185781675 - MER91A DNA MER1_type 0 196 116 839 189 99 11 chr3 32257774 32257965 -185779193 + MER3 DNA MER1_type 1 208 -1 26 30 0 0 chr3 32258166 32258199 -185778959 + AT_rich Low_complexity Low_complexity 1 33 0 427 163 59 43 chr3 32258538 32258648 -185778510 + L1MC3 LINE L1 6212 6319 -1458 494 196 152 0 chr3 32258648 32258760 -185778398 + FLAM_A SINE Alu 2 130 -3 427 163 59 43 chr3 32258760 32258776 -185778382 + L1MC3 LINE L1 6319 7777 0 312 338 21 28 chr3 32258930 32259072 -185778086 - MIR SINE MIR -121 141 1 24 67 0 0 chr3 32261713 32261758 -185775400 + AT_rich Low_complexity Low_complexity 1 45 0 8586 127 16 11 chr3 32262768 32262964 -185774194 - Tigger1 DNA MER2_type -7 2411 2218 1409 163 101 11 chr3 32262964 32263240 -185773918 + AluJo SINE Alu 1 301 -11 8586 127 16 11 chr3 32263240 32264460 -185772698 - Tigger1 DNA MER2_type -200 2218 987 663 129 17 0 chr3 32264939 32265055 -185772103 - Tigger1 DNA MER2_type -1429 989 872 1312 167 42 0 chr3 32265055 32265271 -185771887 - AluJb SINE Alu -14 298 74 4251 171 32 33 chr3 32265271 32265920 -185771238 - Tigger1 DNA MER2_type -1537 881 233 333 0 0 0 chr3 32265920 32265957 -185771201 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2263 68 14 0 chr3 32265965 32266245 -185770913 - AluY SINE Alu -27 284 1 4251 171 32 33 chr3 32266245 32266468 -185770690 - Tigger1 DNA MER2_type -2192 226 1 243 159 159 16 chr3 32267933 32267996 -185769162 + MIR SINE MIR 111 182 -80 266 265 22 96 chr3 32268194 32268330 -185768828 - L2 LINE L2 -212 3060 2935 21 57 0 0 chr3 32268349 32268384 -185768774 + AT_rich Low_complexity Low_complexity 1 35 0 181 182 0 0 chr3 32268505 32268538 -185768620 - MIR SINE MIR -110 152 120 549 211 154 57 chr3 32270352 32270527 -185766631 + MIR SINE MIR 63 254 -8 380 266 7 56 chr3 32272239 32272382 -185764776 + MIR SINE MIR 77 212 -50 557 269 59 63 chr3 32272597 32272835 -185764323 - MIR SINE MIR -2 260 24 29 47 0 0 chr3 32273631 32273674 -185763484 + AT_rich Low_complexity Low_complexity 1 43 0 2298 110 0 3 chr3 32274083 32274393 -185762765 - AluSg SINE Alu 0 310 2 408 301 64 20 chr3 32274927 32275130 -185762028 + MIR SINE MIR 28 239 -23 2035 117 152 11 chr3 32275231 32275606 -185761552 - MSTA LTR MaLR 0 428 1 194 355 43 51 chr3 32275839 32275977 -185761181 + L2 LINE L2 3133 3269 -3 202 259 148 0 chr3 32276128 32276182 -185760976 + MIR SINE MIR 47 108 -154 350 279 153 33 chr3 32276237 32276452 -185760706 + MIR SINE MIR 19 259 -3 212 297 14 27 chr3 32276463 32276537 -185760621 + MIR3 SINE MIR 110 182 -26 745 227 25 17 chr3 32276537 32276820 -185760338 - MLT1A1 LTR MaLR -2 363 1 28 0 0 0 chr3 32278329 32278357 -185758801 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 32278728 32278750 -185758408 + AT_rich Low_complexity Low_complexity 1 22 0 263 290 193 21 chr3 32279905 32280050 -185757108 + MLT1J2 LTR MaLR 82 251 -199 * 706 164 182 36 chr3 32280049 32280179 -185756979 + Charlie4a DNA MER1_type 167 277 -1684 1894 130 20 27 chr3 32280179 32280478 -185756680 - AluJo SINE Alu -15 297 1 706 164 182 36 chr3 32280478 32280627 -185756531 + Charlie4a DNA MER1_type 277 487 -21 5775 82 14 9 chr3 32280964 32281876 -185755282 - L1PB1 LINE L1 -6 6145 5189 283 268 36 113 chr3 32282018 32282186 -185754972 - MIR3 SINE MIR -1 207 53 209 305 0 0 chr3 32282266 32282325 -185754833 + L2 LINE L2 1492 1550 -1764 572 304 144 45 chr3 32282353 32282915 -185754243 + L2 LINE L2 1731 2348 -966 186 286 230 16 chr3 32282939 32283065 -185754093 + L2 LINE L2 2549 2701 -613 1757 201 9 61 chr3 32283080 32283542 -185753616 - LTR47B LTR ERVL 0 443 6 1803 169 23 13 chr3 32283935 32284236 -185752922 + AluJo SINE Alu 1 304 -8 625 267 38 33 chr3 32284925 32285135 -185752023 + L2 LINE L2 3103 3313 0 2132 153 30 6 chr3 32285256 32285622 -185751536 + THE1C LTR MaLR 1 375 0 262 346 60 30 chr3 32285676 32285809 -185751349 - L2 LINE L2 0 3272 3136 1251 183 0 68 chr3 32286291 32286542 -185750616 + AluJb SINE Alu 11 244 -68 6672 180 154 37 chr3 32286559 32288128 -185749030 - MER52A LTR ERV1 0 1755 3 21 0 0 0 chr3 32290180 32290201 -185746957 + AT_rich Low_complexity Low_complexity 1 21 0 232 386 59 0 chr3 32290703 32290804 -185746354 + MIR SINE MIR 20 126 -136 291 278 39 102 chr3 32290858 32291063 -185746095 - MIR SINE MIR -1 261 70 209 333 0 0 chr3 32291011 32291074 -185746084 + MIR SINE MIR 200 262 0 * 199 353 38 49 chr3 32291623 32291807 -185745351 + L2 LINE L2 2871 3052 -220 2490 124 6 0 chr3 32292135 32292497 -185744661 - THE1B LTR MaLR 0 364 1 2087 125 13 20 chr3 32292616 32292921 -185744237 - AluSx SINE Alu -9 303 1 193 0 94 0 chr3 32293050 32293082 -185744076 + A-rich Low_complexity Low_complexity 3 37 0 4685 189 194 82 chr3 32293486 32295065 -185742093 - MER52A LTR ERV1 0 1755 1 751 239 92 14 chr3 32295082 32295300 -185741858 - MIR SINE MIR -21 241 7 209 213 43 0 chr3 32295338 32295385 -185741773 - L2 LINE L2 -2 3270 3222 21 0 0 0 chr3 32295507 32295528 -185741630 + AT_rich Low_complexity Low_complexity 1 21 0 1750 57 8 28 chr3 32295731 32295979 -185741179 - L1PA7 LINE L1 0 6154 5912 2393 134 8 5 chr3 32296627 32297000 -185740158 - MER1A DNA MER1_type 0 529 156 555 139 226 0 chr3 32297172 32297287 -185739871 - MER1A DNA MER1_type -386 141 1 316 266 0 0 chr3 32297316 32297380 -185739778 + MIR SINE MIR 84 147 -61 415 151 32 54 chr3 32297755 32297848 -185739310 + Tigger4(Zombi) DNA MER2_type 2641 2731 0 617 305 124 52 chr3 32298986 32299520 -185737638 - L2 LINE L2 -266 3006 2438 247 307 11 0 chr3 32300228 32300316 -185736842 - MIR SINE MIR -4 258 170 512 148 31 87 chr3 32300340 32300536 -185736622 - Charlie5 DNA MER1_type -1 2611 2427 262 193 70 0 chr3 32300537 32300594 -185736564 - MIR SINE MIR -102 160 100 458 333 18 24 chr3 32301483 32301651 -185735507 - MIR SINE MIR -94 168 2 873 154 82 119 chr3 32301750 32302068 -185735090 - MER33 DNA MER1_type -14 310 5 854 88 35 0 chr3 32302254 32302368 -185734790 - AluSg/x SINE Alu -13 297 180 1258 85 0 18 chr3 32302415 32302579 -185734579 - AluSq SINE Alu -132 181 21 678 275 113 10 chr3 32304027 32304336 -185732822 - L1ME3A LINE L1 -224 5946 5606 1411 147 16 16 chr3 32304336 32304594 -185732564 - Tigger2 DNA MER2_type 0 2718 2461 3722 144 53 21 chr3 32304647 32305368 -185731790 - Tigger2 DNA MER2_type -1974 744 1 579 223 70 42 chr3 32305418 32305689 -185731469 - L1ME3A LINE L1 -613 5549 5254 430 259 74 29 chr3 32305933 32306176 -185730982 - L1ME3A LINE L1 -1478 4668 4415 347 171 0 66 chr3 32306226 32306302 -185730856 + AluSp SINE Alu 137 207 -96 188 293 35 35 chr3 32306750 32306808 -185730350 + L3b LINE CR1 1517 1574 -9 468 325 58 13 chr3 32308296 32308450 -185728708 - MIR SINE MIR -98 164 4 259 239 233 31 chr3 32308916 32309075 -185728083 - MIR SINE MIR -68 194 4 610 349 32 32 chr3 32309085 32309432 -185727726 + L3 LINE CR1 1198 1544 -33 1073 173 14 9 chr3 32310701 32310921 -185726237 - AluSq SINE Alu 0 313 93 32 26 0 0 chr3 32311045 32311084 -185726074 + GC_rich Low_complexity Low_complexity 1 39 0 24 53 0 0 chr3 32311247 32311285 -185725873 + GC_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr3 32311452 32311480 -185725678 + GC_rich Low_complexity Low_complexity 1 28 0 1344 136 31 21 chr3 32311652 32312158 -185725000 - LTR60 LTR ERV1 -3 583 1 2439 203 70 2 chr3 32312158 32312686 -185724472 + L1MD2 LINE L1 5784 6347 -12 566 274 26 13 chr3 32312711 32312912 -185724246 + MIR SINE MIR 12 213 -49 651 261 145 36 chr3 32313015 32313428 -185723730 - L1MEd LINE L1 -2985 3144 2687 551 289 71 16 chr3 32313496 32313807 -185723351 - L1MEd LINE L1 -3528 2601 2274 596 300 51 86 chr3 32313820 32314307 -185722851 - L1MEd LINE L1 -5648 471 2 2348 92 7 0 chr3 32315003 32315308 -185721850 + AluSq SINE Alu 1 307 -6 237 159 0 0 chr3 32315992 32316036 -185721122 + (CTA)n Simple_repeat Simple_repeat 1 44 0 2176 116 3 0 chr3 32316839 32317140 -185720018 - AluSg SINE Alu -8 302 1 189 0 0 0 chr3 32317348 32317369 -185719789 + (T)n Simple_repeat Simple_repeat 1 21 0 327 367 16 27 chr3 32318289 32318477 -185718681 + MIR SINE MIR 23 208 -54 2327 68 7 0 chr3 32318836 32319131 -185718027 - AluY SINE Alu -4 307 11 732 220 108 51 chr3 32319773 32320068 -185717090 + L1MC5 LINE L1 7603 7914 -47 775 159 29 41 chr3 32320114 32320310 -185716848 - MER6 DNA MER2_type -3 862 -62 845 159 0 0 chr3 32323134 32323279 -185713879 - FRAM SINE Alu 0 40 1 2119 108 7 0 chr3 32323471 32323784 -185713374 - AluSg SINE Alu 0 316 2 762 174 6 96 chr3 32323815 32323982 -185713176 - FRAM SINE Alu -30 146 1 819 125 0 16 chr3 32326118 32326246 -185710912 + AluJo SINE Alu 6 131 -181 5905 161 24 10 chr3 32326246 32327746 -185709412 + L1PB3 LINE L1 4094 5625 -529 8291 49 6 0 chr3 32327746 32328709 -185708449 - LTR5 LTR ERVK 0 969 1 5905 161 24 10 chr3 32328709 32329244 -185707914 + L1PB3 LINE L1 5625 6151 -3 2441 90 3 0 chr3 32329544 32329855 -185707303 - AluSp SINE Alu 0 313 2 26 30 0 0 chr3 32329867 32329900 -185707258 + AT_rich Low_complexity Low_complexity 1 33 0 307 247 225 15 chr3 32332568 32332702 -185704456 + MIR SINE MIR 37 190 -72 2136 125 0 0 chr3 32332836 32333131 -185704027 + AluSx SINE Alu 3 297 -15 1081 246 147 14 chr3 32333676 32334022 -185703136 + L1MEc LINE L1 37 428 -5968 536 245 43 93 chr3 32334038 32334340 -185702818 + L1MEc LINE L1 599 885 -5511 1456 204 38 35 chr3 32334897 32335270 -185701888 + MLT1A2 LTR MaLR 1 374 0 832 191 6 0 chr3 32335293 32335450 -185701708 + AluJo SINE Alu 136 293 -19 3521 192 46 97 chr3 32336760 32337448 -185699710 + L1MA9 LINE L1 4270 4991 -1321 948 158 18 23 chr3 32337448 32337619 -185699539 + FRAM SINE Alu 1 164 -12 3521 192 46 97 chr3 32337619 32338003 -185699155 + L1MA9 LINE L1 4991 5393 -919 2007 121 13 3 chr3 32338003 32338301 -185698857 - AluSq SINE Alu -12 301 1 3521 192 46 97 chr3 32338301 32339224 -185697934 + L1MA9 LINE L1 5393 6270 -42 2365 90 7 0 chr3 32339227 32339527 -185697631 - AluSc SINE Alu -7 302 1 32 0 0 0 chr3 32339527 32339559 -185697599 + AT_rich Low_complexity Low_complexity 1 32 0 26 64 0 0 chr3 32339847 32339894 -185697264 + AT_rich Low_complexity Low_complexity 1 47 0 4137 176 82 5 chr3 32339985 32340788 -185696370 - MER6 DNA MER2_type 0 865 1 699 164 9 9 chr3 32341866 32341982 -185695176 + FLAM_A SINE Alu 1 116 -17 1227 160 5 0 chr3 32342442 32342630 -185694528 + AluSg/x SINE Alu 98 286 -26 267 274 0 0 chr3 32342870 32342932 -185694226 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 716 299 58 31 chr3 32343060 32343508 -185693650 - L1ME LINE L1 -310 5811 5352 1650 159 10 45 chr3 32343679 32343993 -185693165 - AluJb SINE Alu -9 303 1 1225 254 100 65 chr3 32345022 32345450 -185691708 + L2 LINE L2 2278 2690 -623 1617 164 4 4 chr3 32345450 32345706 -185691452 - AluJb SINE Alu -56 256 1 1225 254 100 65 chr3 32345706 32346276 -185690882 + L2 LINE L2 2690 3312 -1 385 255 39 10 chr3 32346306 32346408 -185690750 - MIR SINE MIR -110 152 48 3772 46 0 0 chr3 32348356 32348813 -185688345 - L1PA5 LINE L1 -6 6148 5692 2030 148 7 0 chr3 32349099 32349403 -185687755 + AluSx SINE Alu 3 308 -4 199 245 0 0 chr3 32349566 32349615 -185687543 - L2 LINE L2 -2 3311 3263 246 343 40 10 chr3 32349769 32349868 -185687290 - L2 LINE L2 -21 3292 3191 1003 220 19 19 chr3 32349885 32350099 -185687059 - MER20 DNA MER1_type -5 214 1 373 273 33 82 chr3 32350185 32350368 -185686790 - L2 LINE L2 -966 2348 2175 25 0 0 0 chr3 32350612 32350637 -185686521 + AT_rich Low_complexity Low_complexity 1 25 0 327 311 66 9 chr3 32350768 32350874 -185686284 - MIR3 SINE MIR -82 126 15 1529 172 0 68 chr3 32351006 32351314 -185685844 - AluJb SINE Alu -25 287 1 770 130 9 0 chr3 32351440 32351555 -185685603 + AluSq/x SINE Alu 3 118 -195 21 0 0 0 chr3 32351685 32351706 -185685452 + AT_rich Low_complexity Low_complexity 1 21 0 1101 151 17 0 chr3 32351765 32351944 -185685214 + AluSx SINE Alu 62 243 -69 303 28 0 0 chr3 32351959 32351995 -185685163 + (CATA)n Simple_repeat Simple_repeat 1 36 0 1039 285 112 16 chr3 32352377 32352878 -185684280 - L1MC4a LINE L1 -1911 5897 5349 527 260 42 34 chr3 32353018 32353289 -185683869 + L2 LINE L2 2720 3068 -245 180 0 0 0 chr3 32353626 32353646 -185683512 + (TTA)n Simple_repeat Simple_repeat 2 21 0 306 0 0 0 chr3 32354159 32354193 -185682965 + (TG)n Simple_repeat Simple_repeat 2 35 0 260 267 0 0 chr3 32354205 32354280 -185682878 + L1MC4 LINE L1 7892 7966 -76 235 282 64 0 chr3 32354420 32354498 -185682660 - L2 LINE L2 -220 3052 2970 1599 160 19 58 chr3 32354713 32355025 -185682133 + AluJo SINE Alu 1 300 -12 1336 169 0 33 chr3 32358714 32358956 -185678202 - AluJb SINE Alu -11 301 68 380 198 62 0 chr3 32359303 32359384 -185677774 + MIR SINE MIR 147 232 -30 1504 206 18 0 chr3 32359704 32359981 -185677177 - AluJo SINE Alu -30 282 1 911 123 190 0 chr3 32360681 32360745 -185676413 - MER30 DNA MER1_type -36 194 143 207 0 0 0 chr3 32360745 32360768 -185676390 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 911 123 190 0 chr3 32360768 32360866 -185676292 - MER30 DNA MER1_type -87 143 1 2494 53 0 7 chr3 32361167 32361470 -185675688 - AluY SINE Alu -10 301 1 24 0 0 0 chr3 32363257 32363281 -185673877 + AT_rich Low_complexity Low_complexity 1 24 0 488 256 94 19 chr3 32363407 32363567 -185673591 - MIR SINE MIR 0 262 91 262 269 115 29 chr3 32363623 32363727 -185673431 - MIR3 SINE MIR -5 203 91 330 45 0 0 chr3 32363888 32363932 -185673226 + (CA)n Simple_repeat Simple_repeat 2 45 0 1922 178 153 18 chr3 32363940 32364385 -185672773 - MLT1D LTR MaLR 0 505 1 182 191 235 0 chr3 32365501 32365569 -185671589 - L2 LINE L2 -3 3269 3186 21 0 0 0 chr3 32366017 32366038 -185671120 + AT_rich Low_complexity Low_complexity 1 21 0 2288 161 39 0 chr3 32366038 32366449 -185670709 + L1MC/D LINE L1 5316 5742 -617 1327 219 21 21 chr3 32366472 32366759 -185670399 + MER21B LTR ERV1 12 298 -565 2402 19 0 4 chr3 32466831 32467097 -185570061 + AluY SINE Alu 37 301 -10 248 261 165 0 chr3 32467160 32467275 -185569883 + L2 LINE L2 2625 2758 -556 1978 153 0 22 chr3 32467278 32467592 -185569566 - AluSx SINE Alu -5 307 1 1799 176 14 0 chr3 32468265 32468543 -185568615 + AluJo SINE Alu 1 282 -30 2215 122 0 25 chr3 32469197 32469541 -185567617 + AluSx SINE Alu 1 336 0 1868 157 16 0 chr3 32469542 32469848 -185567310 + AluJo SINE Alu 1 311 -1 2587 68 3 0 chr3 32469982 32470291 -185566867 - AluSq SINE Alu -3 310 1 215 163 82 20 chr3 32470507 32470556 -185566602 + L2 LINE L2 3217 3268 -4 377 131 0 0 chr3 32471373 32471434 -185565724 + MER5A DNA MER1_type 2 62 -127 1942 146 43 65 chr3 32471542 32471876 -185565282 + MLT1B LTR MaLR 3 329 -61 2254 85 11 0 chr3 32471876 32472193 -185564965 + AluSp SINE Alu 1 320 0 1942 146 43 65 chr3 32472193 32472254 -185564904 + MLT1B LTR MaLR 329 390 0 443 267 92 24 chr3 32472349 32472555 -185564603 - MIR SINE MIR -41 221 2 261 285 99 10 chr3 32472629 32472746 -185564412 - MIR SINE MIR -67 141 34 22 0 0 0 chr3 32472874 32472896 -185564262 + AT_rich Low_complexity Low_complexity 1 22 0 654 235 31 46 chr3 32473040 32473236 -185563922 + MIR SINE MIR 35 227 -35 180 111 0 0 chr3 32473608 32473635 -185563523 + (TAA)n Simple_repeat Simple_repeat 1 27 0 430 237 70 95 chr3 32473789 32474005 -185563153 + L1MC4a LINE L1 5656 5775 -346 447 54 0 0 chr3 32474005 32474061 -185563097 + L1MB8 LINE L1 6118 6173 -5 430 237 70 95 chr3 32474061 32474110 -185563048 + L1MC4a LINE L1 5775 5824 -297 216 256 137 0 chr3 32474334 32474451 -185562707 - MIR SINE MIR -6 256 124 2156 137 0 7 chr3 32474639 32474945 -185562213 - AluSx SINE Alu -8 304 1 1230 66 48 0 chr3 32474958 32475125 -185562033 - L1MA1 LINE L1 0 6302 6128 200 250 238 0 chr3 32475701 32475785 -185561373 - MIR SINE MIR -6 256 153 550 263 76 15 chr3 32476163 32476361 -185560797 - L2 LINE L2 0 3313 3104 230 204 0 0 chr3 32476440 32476484 -185560674 - L1MC4 LINE L1 -1347 6695 6652 814 236 27 16 chr3 32476500 32476687 -185560471 + MER8 DNA MER2_type 2 239 0 250 293 0 0 chr3 32476687 32476745 -185560413 + (TA)n Simple_repeat Simple_repeat 1 58 0 309 194 145 0 chr3 32476745 32476822 -185560336 - MIR SINE MIR -66 142 64 246 209 0 0 chr3 32477444 32477487 -185559671 + LTR67 LTR ERVL 500 542 -15 244 175 0 0 chr3 32477464 32477504 -185559654 + MLT1K LTR MaLR 549 588 0 * 276 343 64 10 chr3 32477616 32477820 -185559338 - L2 LINE L2 -188 3084 2870 2142 106 7 0 chr3 32477999 32478305 -185558853 - AluSp SINE Alu 0 308 1 1842 129 36 39 chr3 32478305 32478614 -185558544 - AluJo SINE Alu -4 308 1 1456 236 129 14 chr3 32478887 32479362 -185557796 - MLT1E1 LTR MaLR 0 654 62 1841 181 10 0 chr3 32479362 32479655 -185557503 + AluJo SINE Alu 1 296 -16 1456 236 129 14 chr3 32479655 32479725 -185557433 - MLT1E1 LTR MaLR -592 62 1 1075 217 120 124 chr3 32479860 32479953 -185557205 - MLT1D LTR MaLR 0 505 413 1027 172 151 79 chr3 32479953 32480083 -185557075 + AluJo SINE Alu 3 122 -180 2312 95 3 0 chr3 32480083 32480379 -185556779 + AluSp SINE Alu 6 302 -11 1027 172 151 79 chr3 32480379 32480527 -185556631 + AluJo SINE Alu 122 301 -1 1075 217 120 124 chr3 32480527 32480940 -185556218 - MLT1D LTR MaLR -92 413 1 234 0 0 0 chr3 32481341 32481367 -185555791 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2179 111 0 29 chr3 32481454 32481761 -185555397 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 32481761 32481789 -185555369 + AT_rich Low_complexity Low_complexity 1 28 0 2443 92 0 0 chr3 32482711 32483017 -185554141 + AluSg1 SINE Alu 1 306 -3 579 217 90 38 chr3 32483194 32483406 -185553752 + MIR SINE MIR 17 239 -23 446 274 196 38 chr3 32483487 32483771 -185553387 + L2 LINE L2 2851 3217 -96 506 209 76 19 chr3 32483771 32483876 -185553282 - MER81 DNA DNA -3 111 1 446 274 196 38 chr3 32483876 32483989 -185553169 + L2 LINE L2 3217 3311 -2 692 201 63 0 chr3 32486964 32487138 -185550020 - MER53 DNA DNA -1 188 4 355 199 46 99 chr3 32487252 32487383 -185549775 - MLT1H LTR MaLR -16 533 416 364 288 24 16 chr3 32487590 32487715 -185549443 + MIR SINE MIR 21 146 -62 873 221 55 106 chr3 32487965 32488381 -185548777 + HAL1 LINE L1 1 395 -2112 * 4177 183 21 11 chr3 32488375 32488675 -185548483 - L1MC/D LINE L1 -608 5736 5440 1924 162 30 0 chr3 32488675 32488978 -185548180 - AluJb SINE Alu 0 312 1 4177 183 21 11 chr3 32488978 32489944 -185547214 - L1MC/D LINE L1 -904 5440 4460 1563 117 160 44 chr3 32489944 32489983 -185547175 - THE1C LTR MaLR 0 375 342 1683 134 8 4 chr3 32489983 32490236 -185546922 + AluSx SINE Alu 55 308 -4 1563 117 160 44 chr3 32490236 32490514 -185546644 - THE1C LTR MaLR -33 342 31 2393 95 0 0 chr3 32490514 32490820 -185546338 + AluY SINE Alu 1 306 -5 1563 117 160 44 chr3 32490820 32490856 -185546302 - THE1C LTR MaLR -344 31 1 4458 204 24 131 chr3 32490856 32491587 -185545571 - L1MC/D LINE L1 -1682 4464 3657 840 165 31 0 chr3 32491587 32491714 -185545444 + FLAM_C SINE Alu 1 131 -12 4458 204 24 131 chr3 32491714 32491950 -185545208 - L1MC/D LINE L1 -2489 3657 3397 2368 99 3 7 chr3 32491950 32492253 -185544905 + AluSp SINE Alu 1 302 -11 4458 204 24 131 chr3 32492253 32492355 -185544803 - L1MC/D LINE L1 -2749 3397 3286 1791 175 0 20 chr3 32492355 32492658 -185544500 - AluJo SINE Alu -13 299 3 4458 204 24 131 chr3 32492658 32492914 -185544244 - L1MC/D LINE L1 -2860 3286 3252 2352 117 0 0 chr3 32492914 32493222 -185543936 - AluSg SINE Alu -2 308 1 4458 204 24 131 chr3 32493222 32493637 -185543521 - L1MC/D LINE L1 -2894 3252 2794 897 165 10 0 chr3 32493657 32493868 -185543290 + CT-rich Low_complexity Low_complexity 1 213 0 960 65 0 40 chr3 32493886 32494010 -185543148 - AluSq/x SINE Alu -194 119 1 596 243 29 0 chr3 32494021 32494161 -185542997 - L1MC/D LINE L1 -3380 2766 2623 22 35 0 0 chr3 32494992 32495021 -185542137 + AT_rich Low_complexity Low_complexity 1 29 0 2161 108 0 0 chr3 32495030 32495309 -185541849 - AluSx SINE Alu -33 279 1 1775 138 54 40 chr3 32495404 32495701 -185541457 + AluSx SINE Alu 1 301 -11 685 225 133 92 chr3 32496571 32496659 -185540499 - MLT1J LTR MaLR -22 489 406 2436 90 0 0 chr3 32496659 32496959 -185540199 + AluSp SINE Alu 2 301 -12 685 225 133 92 chr3 32496959 32497336 -185539822 - MLT1J LTR MaLR -105 406 5 215 31 31 0 chr3 32497824 32497856 -185539302 + (TA)n Simple_repeat Simple_repeat 1 33 0 1506 161 136 13 chr3 32497903 32498220 -185538938 - MLT1A1 LTR MaLR -8 357 2 437 244 41 1 chr3 32498398 32498517 -185538641 - L1ME2 LINE L1 -1 6183 6050 1525 203 17 3 chr3 32498527 32498823 -185538335 + AluJo SINE Alu 1 300 -12 2158 128 0 16 chr3 32498823 32499129 -185538029 + AluSg SINE Alu 1 301 -9 332 207 0 23 chr3 32499159 32499246 -185537912 + GA-rich Low_complexity Low_complexity 2 86 0 2207 121 7 0 chr3 32499250 32499728 -185537430 + AluSg SINE Alu 1 480 0 713 168 20 204 chr3 32499810 32500018 -185537140 - L1ME2 LINE L1 -110 6054 5938 591 202 81 8 chr3 32500018 32500142 -185537016 - FLAM_A SINE Alu 0 133 1 713 168 20 204 chr3 32500142 32500290 -185536868 - L1ME2 LINE L1 -226 5938 5764 196 281 18 0 chr3 32500292 32500349 -185536809 - MIR SINE MIR 0 262 205 2369 111 0 0 chr3 32500727 32501033 -185536125 - AluSg SINE Alu -4 306 1 293 205 8 94 chr3 32501096 32501213 -185535945 - MIR SINE MIR -105 157 51 1947 170 0 0 chr3 32501214 32501526 -185535632 + AluSx SINE Alu 1 312 0 2235 118 0 3 chr3 32502373 32502677 -185534481 - AluSx SINE Alu -9 303 1 579 252 74 26 chr3 32502763 32503106 -185534052 + LTR16A LTR ERVL 21 413 -37 429 238 34 62 chr3 32503271 32503295 -185533863 - MIR SINE MIR -62 146 123 1795 156 3 23 chr3 32503295 32503597 -185533561 - AluJo SINE Alu -16 296 1 429 238 34 62 chr3 32503597 32503750 -185533408 - MIR SINE MIR -85 123 2 2224 110 0 0 chr3 32503924 32504215 -185532943 - AluSx SINE Alu -21 291 1 814 228 46 14 chr3 32504286 32504675 -185532483 - MLT1C LTR MaLR -5 462 1 * 874 183 77 73 chr3 32504675 32504948 -185532210 - LTR37B LTR ERV1 -82 386 113 942 132 5 136 chr3 32504958 32505134 -185532024 + MER3 DNA MER1_type 11 154 -55 1649 186 16 16 chr3 32505134 32505441 -185531717 + AluJb SINE Alu 3 309 -3 942 132 5 136 chr3 32505441 32505484 -185531674 + MER3 DNA MER1_type 154 201 -8 365 224 121 0 chr3 32505484 32505600 -185531558 - LTR37B LTR ERV1 -338 130 1 357 314 70 77 chr3 32505950 32506362 -185530796 - L2 LINE L2 0 3272 2862 2408 89 3 0 chr3 32506362 32506664 -185530494 + AluSq SINE Alu 1 303 -10 357 314 70 77 chr3 32506664 32506719 -185530439 - L2 LINE L2 -410 2862 2808 235 341 66 46 chr3 32506796 32506958 -185530200 - L2 LINE L2 0 3313 3156 912 190 0 18 chr3 32506958 32507121 -185530037 + FRAM SINE Alu 2 161 -5 1605 170 58 11 chr3 32507122 32507398 -185529760 + AluJb SINE Alu 1 289 -23 2291 90 10 3 chr3 32507401 32507700 -185529458 + AluSg SINE Alu 1 301 -9 235 341 66 46 chr3 32507700 32507880 -185529278 - L2 LINE L2 -158 3155 2958 513 242 137 68 chr3 32507954 32508413 -185528745 - L1ME4a LINE L1 -68 6053 5563 259 214 135 79 chr3 32508506 32508595 -185528563 + L2 LINE L2 3199 3292 -21 319 236 143 33 chr3 32509686 32509868 -185527290 + L1MEd LINE L1 965 1166 -4953 2266 110 3 0 chr3 32509882 32510183 -185526975 + AluSx SINE Alu 1 302 -10 650 305 83 52 chr3 32510184 32510207 -185526951 + HAL1 LINE L1 1243 1264 -1243 2083 129 0 7 chr3 32510207 32510509 -185526649 - AluSx SINE Alu -10 302 3 650 305 83 52 chr3 32510509 32510980 -185526178 + HAL1 LINE L1 1264 1752 -755 1784 164 0 30 chr3 32511040 32511344 -185525814 + AluJo SINE Alu 1 295 -17 1878 72 122 11 chr3 32511347 32511610 -185525548 + AluSg1 SINE Alu 1 292 -17 2027 94 44 7 chr3 32511659 32511963 -185525195 + AluSc SINE Alu 1 314 0 1618 129 70 39 chr3 32513924 32514236 -185522922 - AluJb SINE Alu 0 312 1 417 317 35 14 chr3 32514466 32514608 -185522550 - MER96 DNA MER1_type? -28 147 3 1819 158 3 0 chr3 32514970 32515262 -185521896 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr3 32516348 32516371 -185520787 + AT_rich Low_complexity Low_complexity 1 23 0 1997 121 0 22 chr3 32518392 32518706 -185518452 + AluSx SINE Alu 1 307 -5 1678 138 26 35 chr3 32519071 32519382 -185517776 - AluJb SINE Alu -3 309 2 195 42 0 0 chr3 32519482 32519506 -185517652 + (TAA)n Simple_repeat Simple_repeat 1 24 0 248 161 36 0 chr3 32519879 32519935 -185517223 + CT-rich Low_complexity Low_complexity 1 58 0 317 102 51 34 chr3 32520133 32520192 -185516966 + L1MCa LINE L1 1995 2054 -4372 2090 106 0 3 chr3 32520195 32520498 -185516660 - AluSx SINE Alu -10 302 1 973 160 0 0 chr3 32520568 32520718 -185516440 - FRAM SINE Alu -26 150 1 208 293 0 0 chr3 32521579 32521637 -185515521 + GA-rich Low_complexity Low_complexity 1 58 0 519 256 141 6 chr3 32521642 32521840 -185515318 + MIR SINE MIR 8 234 -28 534 256 0 16 chr3 32522276 32522401 -185514757 - MER94 DNA DNA 0 134 12 329 114 0 0 chr3 32522673 32522717 -185514441 - MLT1B LTR MaLR -1 389 346 1192 107 0 0 chr3 32522728 32522896 -185514262 + AluSg/x SINE Alu 129 296 -14 1728 160 17 0 chr3 32522896 32523190 -185513968 - MLT1B LTR MaLR -65 325 27 1262 167 70 22 chr3 32523193 32523463 -185513695 + AluJo SINE Alu 1 283 -29 213 94 0 0 chr3 32523469 32523501 -185513657 + (TA)n Simple_repeat Simple_repeat 2 33 0 297 201 4 65 chr3 32523527 32523595 -185513563 - MER104 DNA Tc2 -1806 92 37 1417 178 0 38 chr3 32523595 32523909 -185513249 + AluJo SINE Alu 1 302 -10 297 201 4 65 chr3 32523909 32523943 -185513215 - MER104 DNA Tc2 -1861 37 2 197 350 18 69 chr3 32524167 32524444 -185512714 + L2 LINE L2 2560 2822 -492 339 44 0 0 chr3 32524820 32524865 -185512293 + (TG)n Simple_repeat Simple_repeat 2 46 0 866 256 16 64 chr3 32524946 32525258 -185511900 + MER102a DNA MER1_type 34 330 0 2097 123 0 0 chr3 32525643 32525944 -185511214 - AluSq SINE Alu -4 309 9 312 290 56 28 chr3 32525988 32526095 -185511063 - MER91C DNA MER1_type -30 110 1 282 29 0 0 chr3 32526106 32526141 -185511017 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr3 32526204 32526232 -185510926 + AT_rich Low_complexity Low_complexity 1 28 0 2191 77 0 3 chr3 32526482 32526805 -185510353 - AluY SINE Alu 0 322 1 22 0 0 0 chr3 32526805 32526827 -185510331 + AT_rich Low_complexity Low_complexity 1 22 0 425 231 0 65 chr3 32526831 32526939 -185510219 - MER5A DNA MER1_type -80 109 9 22 0 0 0 chr3 32527035 32527057 -185510101 + AT_rich Low_complexity Low_complexity 1 22 0 1946 114 35 44 chr3 32527057 32527182 -185509976 - L1MB3 LINE L1 -7 6176 6051 1988 135 3 3 chr3 32527182 32527479 -185509679 + AluSx SINE Alu 1 297 -15 1946 114 35 44 chr3 32527479 32527695 -185509463 - L1MB3 LINE L1 -132 6051 5838 1427 174 12 70 chr3 32527703 32528030 -185509128 - AluJb SINE Alu -4 308 1 806 211 73 25 chr3 32528430 32528634 -185508524 - MIR SINE MIR -2 260 47 1194 235 78 16 chr3 32529726 32530045 -185507113 - L1MC4 LINE L1 -138 7904 7566 1178 120 0 11 chr3 32530045 32530220 -185506938 - AluSg/x SINE Alu -14 298 126 1889 106 0 18 chr3 32530221 32530496 -185506662 - AluSg SINE Alu -18 292 23 2007 107 3 7 chr3 32530499 32530790 -185506368 - AluSx SINE Alu -21 291 2 875 238 181 0 chr3 32530798 32531079 -185506079 - L1MC4 LINE L1 -473 7569 7238 335 125 0 198 chr3 32531087 32531123 -185506035 - L1MC4 LINE L1 -966 7076 7069 2287 93 3 0 chr3 32531123 32531434 -185505724 - AluSx SINE Alu 0 312 1 335 125 0 198 chr3 32531434 32531493 -185505665 - L1MC4 LINE L1 -973 7069 7000 2155 93 0 7 chr3 32532226 32532526 -185504632 - AluSx SINE Alu -14 298 1 180 295 11 74 chr3 32532813 32532908 -185504250 + MIR SINE MIR 109 197 -65 2297 101 0 0 chr3 32532927 32533234 -185503924 + AluSq SINE Alu 1 307 -6 484 349 32 24 chr3 32533235 32533484 -185503674 - MIR SINE MIR -2 260 10 245 274 104 96 chr3 32534622 32534757 -185502401 - MIR3 SINE MIR -60 148 13 388 310 21 35 chr3 32534946 32535091 -185502067 + MER91A DNA MER1_type 1 143 -53 309 250 90 20 chr3 32535101 32535201 -185501957 + MER91A DNA MER1_type 86 192 -4 419 267 78 30 chr3 32535206 32535450 -185501708 + MLT1K LTR MaLR 30 320 -268 303 235 106 12 chr3 32535531 32535616 -185501542 + MLT1K LTR MaLR 496 588 0 228 135 0 0 chr3 32536055 32536092 -185501066 + (A)n Simple_repeat Simple_repeat 1 37 0 213 39 0 0 chr3 32536135 32536161 -185500997 + (TC)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr3 32536678 32536700 -185500458 + AT_rich Low_complexity Low_complexity 1 22 0 23 65 0 16 chr3 32536793 32536833 -185500325 + AT_rich Low_complexity Low_complexity 1 41 -20 2292 32 4 0 chr3 32536833 32537111 -185500047 + AluY SINE Alu 1 279 -32 23 65 0 16 chr3 32537111 32537132 -185500026 + AT_rich Low_complexity Low_complexity 41 61 0 351 0 0 0 chr3 32537132 32537171 -185499987 + (TTA)n Simple_repeat Simple_repeat 2 40 0 373 286 151 0 chr3 32537875 32538001 -185499157 + MIR SINE MIR 48 192 -70 1753 135 3 33 chr3 32538003 32538306 -185498852 + AluSx SINE Alu 1 294 -18 841 219 52 36 chr3 32538967 32539216 -185497942 + MLT1D LTR MaLR 1 240 -227 2305 90 0 3 chr3 32539247 32539559 -185497599 - AluY SINE Alu 0 311 1 1604 149 10 35 chr3 32539560 32539848 -185497310 - AluJb SINE Alu -13 299 19 2174 101 0 25 chr3 32540022 32540339 -185496819 - AluSx SINE Alu -3 309 1 939 183 0 0 chr3 32540345 32540520 -185496638 - FRAM SINE Alu 0 176 2 193 333 93 31 chr3 32540563 32540692 -185496466 - MER5A DNA MER1_type -10 179 43 484 264 182 0 chr3 32540739 32540887 -185496271 - MER5A DNA MER1_type -8 181 7 306 148 0 0 chr3 32541424 32541478 -185495680 - L1MC4 LINE L1 0 8042 7989 3275 162 43 14 chr3 32541481 32542006 -185495152 + L1MB5 LINE L1 5550 6095 -79 1990 111 24 0 chr3 32542006 32542304 -185494854 - AluY SINE Alu -6 305 1 3275 162 43 14 chr3 32542304 32542353 -185494805 + L1MB5 LINE L1 6095 6141 -33 1235 181 4 26 chr3 32542353 32542579 -185494579 + AluJo SINE Alu 1 221 -91 455 195 0 0 chr3 32542655 32542732 -185494426 + AluJo SINE Alu 223 299 -13 230 81 0 0 chr3 32542732 32542769 -185494389 + L1MB5 LINE L1 6132 6168 -6 2008 105 21 0 chr3 32542786 32543071 -185494087 + AluSg SINE Alu 1 291 -19 1948 213 65 44 chr3 32543120 32543660 -185493498 - L1MC4 LINE L1 -194 7848 7298 1627 65 0 30 chr3 32543669 32543900 -185493258 + AluY SINE Alu 88 311 0 185 320 20 0 chr3 32544033 32544083 -185493075 - L2 LINE L2 -84 3188 3138 1949 138 0 0 chr3 32544153 32544450 -185492708 + AluSx SINE Alu 1 297 -15 2137 99 0 3 chr3 32545231 32545525 -185491633 - AluSx SINE Alu -19 293 1 2087 113 7 0 chr3 32545535 32545827 -185491331 - AluSq SINE Alu -19 294 1 37 52 0 0 chr3 32545904 32545962 -185491196 + AT_rich Low_complexity Low_complexity 1 58 0 773 184 0 75 chr3 32546025 32546199 -185490959 + AluJo SINE Alu 121 281 -31 327 272 44 78 chr3 32546221 32546394 -185490764 - L1ME4a LINE L1 -1 6120 5943 1920 116 14 130 chr3 32546394 32546424 -185490734 + MER47A DNA MER2_type 1 33 -2290 1697 186 10 0 chr3 32546424 32546719 -185490439 - AluJb SINE Alu -14 298 1 1920 116 14 130 chr3 32546719 32546842 -185490316 + MER47A DNA MER2_type 33 169 -2154 2165 109 0 13 chr3 32546842 32547146 -185490012 + AluSx SINE Alu 1 300 -12 1920 116 14 130 chr3 32547146 32547184 -185489974 + MER47A DNA MER2_type 169 210 -2113 1637 170 31 7 chr3 32547184 32547473 -185489685 + AluJo SINE Alu 1 296 -16 1920 116 14 130 chr3 32547473 32547693 -185489465 + MER47A DNA MER2_type 210 366 0 187 348 141 0 chr3 32548235 32548302 -185488856 - MIR SINE MIR 0 262 206 189 0 0 0 chr3 32548302 32548323 -185488835 + (TA)n Simple_repeat Simple_repeat 1 21 0 187 348 141 0 chr3 32548323 32548390 -185488768 - MIR SINE MIR -56 206 109 1214 259 123 5 chr3 32548390 32548803 -185488355 + LTR16C LTR ERVL 1 462 -29 287 280 40 40 chr3 32548829 32548929 -185488229 - MIR SINE MIR -148 114 15 2351 66 3 0 chr3 32548929 32549230 -185487928 - AluY SINE Alu -9 302 1 1997 140 0 10 chr3 32550945 32551252 -185485906 + AluJb SINE Alu 1 304 -8 792 137 86 6 chr3 32551353 32551528 -185485630 - MER33 DNA MER1_type 0 363 175 1693 207 55 34 chr3 32551528 32551910 -185485248 + MSTD LTR MaLR 1 390 -6 1027 146 0 38 chr3 32551915 32552100 -185485058 - FRAM SINE Alu -6 170 1 2107 102 0 16 chr3 32552182 32552486 -185484672 - AluSx SINE Alu -13 299 1 515 266 0 0 chr3 32552490 32552599 -185484559 - MER33 DNA MER1_type -215 109 1 452 232 80 0 chr3 32552599 32552711 -185484447 - MIR SINE MIR -54 208 88 578 248 37 70 chr3 32552750 32552778 -185484380 + MIR SINE MIR 53 80 -182 2198 91 10 0 chr3 32552778 32553074 -185484084 - AluSx SINE Alu -13 299 1 578 248 37 70 chr3 32553074 32553259 -185483899 + MIR SINE MIR 80 259 -3 511 158 53 0 chr3 32553542 32553637 -185483521 - MLT1G1 LTR MaLR 0 595 496 241 267 67 27 chr3 32553667 32553742 -185483416 - L2 LINE L2 -24 3289 3212 189 0 0 0 chr3 32554009 32554030 -185483128 + (T)n Simple_repeat Simple_repeat 1 21 0 292 307 22 0 chr3 32554947 32555084 -185482074 + L1MB7 LINE L1 5191 5330 -816 1119 186 5 18 chr3 32555115 32555336 -185481822 + AluJo SINE Alu 89 306 -6 854 286 69 31 chr3 32555337 32555923 -185481235 + L1MB7 LINE L1 5305 5922 -262 652 274 142 46 chr3 32555925 32556356 -185480802 - L2 LINE L2 -1 3312 2841 396 287 98 60 chr3 32556416 32556733 -185480425 - L2 LINE L2 -2546 768 440 311 235 33 131 chr3 32556756 32556909 -185480249 + HAL1b LINE L1 1198 1335 -13 1598 150 42 0 chr3 32557204 32557490 -185479668 - AluJb SINE Alu -4 308 11 395 305 8 23 chr3 32557909 32558037 -185479121 + MER5A DNA MER1_type 64 189 0 261 0 0 0 chr3 32558448 32558477 -185478681 + (CA)n Simple_repeat Simple_repeat 1 29 0 523 284 83 28 chr3 32558760 32558978 -185478180 - L2 LINE L2 -4 3309 3080 321 140 0 0 chr3 32559629 32559686 -185477472 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 2125 90 31 0 chr3 32559690 32559978 -185477180 - AluSp SINE Alu -16 297 1 297 226 57 113 chr3 32559978 32560102 -185477056 - L2 LINE L2 -1 3312 3196 249 83 0 0 chr3 32560330 32560366 -185476792 + (T)n Simple_repeat Simple_repeat 1 36 0 1566 186 27 0 chr3 32560387 32560683 -185476475 - AluJb SINE Alu -8 304 1 322 302 190 43 chr3 32560799 32560935 -185476223 + L1ME4a LINE L1 5852 5967 -154 2080 101 0 0 chr3 32560935 32561213 -185475945 - AluSg SINE Alu -32 278 1 2038 132 0 0 chr3 32561213 32561516 -185475642 - AluSx SINE Alu -8 304 1 322 302 190 43 chr3 32561516 32561610 -185475548 + L1ME4a LINE L1 5966 6117 -4 825 178 46 0 chr3 32561614 32561766 -185475392 - FRAM SINE Alu -22 154 1 1705 160 3 17 chr3 32561783 32562077 -185475081 + AluJb SINE Alu 1 290 -22 372 188 138 0 chr3 32562283 32562363 -185474795 - MER5A DNA MER1_type -84 105 15 630 315 55 14 chr3 32562379 32562598 -185474560 + MIR SINE MIR 35 262 0 2232 87 10 13 chr3 32563710 32564021 -185473137 - AluSp SINE Alu -3 310 1 328 239 60 17 chr3 32564171 32564288 -185472870 - MIR SINE MIR -70 192 71 261 83 0 0 chr3 32564477 32564513 -185472645 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 678 249 116 3 chr3 32564922 32565107 -185472051 + MIR SINE MIR 26 217 -45 2085 118 3 0 chr3 32565747 32566034 -185471124 + AluSx SINE Alu 1 288 -24 44 0 0 0 chr3 32566034 32566078 -185471080 + AT_rich Low_complexity Low_complexity 1 44 0 975 232 13 9 chr3 32566670 32566903 -185470255 + MIR SINE MIR 26 259 -3 289 271 49 65 chr3 32567123 32567302 -185469856 + L1MC4 LINE L1 7325 7511 -297 281 261 73 98 chr3 32567306 32567499 -185469659 + L1MC5 LINE L1 7354 7535 -426 1763 172 0 0 chr3 32567499 32567772 -185469386 + AluJo SINE Alu 1 273 -39 281 261 73 98 chr3 32567772 32567934 -185469224 + L1MC5 LINE L1 7535 7700 -261 2232 102 3 0 chr3 32567963 32568256 -185468902 - AluSx SINE Alu -18 294 1 2332 59 0 26 chr3 32570142 32570445 -185466713 - AluY SINE Alu -16 295 1 589 314 74 0 chr3 32570445 32570674 -185466484 - MIR SINE MIR -3 259 14 2341 102 0 0 chr3 32570969 32571272 -185465886 - AluSg SINE Alu -7 303 1 270 0 0 0 chr3 32571311 32571341 -185465817 + (TG)n Simple_repeat Simple_repeat 2 31 0 376 355 14 0 chr3 32571553 32571694 -185465464 + MIR3 SINE MIR 59 201 -7 243 253 205 0 chr3 32571937 32572020 -185465138 - L2 LINE L2 -20 3293 3194 1122 236 190 25 chr3 32572545 32572981 -185464177 - L1MC4 LINE L1 0 8042 7535 39 68 0 0 chr3 32572984 32573058 -185464100 + AT_rich Low_complexity Low_complexity 1 74 0 1001 165 0 29 chr3 32573236 32573406 -185463752 + FRAM SINE Alu 6 170 -6 194 283 19 19 chr3 32573426 32573479 -185463679 + L2 LINE L2 3210 3262 -10 2365 93 10 0 chr3 32574447 32574748 -185462410 - AluSx SINE Alu -7 305 2 1929 160 7 3 chr3 32575534 32575840 -185461318 - AluJb SINE Alu -5 307 1 425 266 0 119 chr3 32575932 32575993 -185461165 + MIR3 SINE MIR 50 117 -91 2318 95 0 19 chr3 32575993 32576308 -185460850 - AluSc SINE Alu 0 309 1 425 266 0 119 chr3 32576308 32576423 -185460735 + MIR3 SINE MIR 117 205 -3 221 284 27 14 chr3 32576675 32576749 -185460409 - MIR SINE MIR -123 139 65 21 0 0 0 chr3 32578169 32578190 -185458968 + AT_rich Low_complexity Low_complexity 1 21 0 233 132 0 19 chr3 32579017 32579070 -185458088 + (GGA)n Simple_repeat Simple_repeat 1 52 0 56 105 0 0 chr3 32579257 32579467 -185457691 + GC_rich Low_complexity Low_complexity 1 210 0 23 54 0 0 chr3 32579772 32579809 -185457349 + GC_rich Low_complexity Low_complexity 1 37 0 222 289 50 25 chr3 32579820 32579941 -185457217 + C-rich Low_complexity Low_complexity 5 128 0 24 32 0 0 chr3 32580053 32580084 -185457074 + GC_rich Low_complexity Low_complexity 1 31 0 338 255 130 104 chr3 32583689 32584198 -185452960 - L1M2 LINE L1 -5495 1354 833 234 0 0 0 chr3 32586679 32586705 -185450453 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2084 95 21 21 chr3 32586707 32586992 -185450166 - AluSg SINE Alu -25 285 1 441 27 0 13 chr3 32587240 32587316 -185449842 + AluY SINE Alu 123 292 -20 1645 174 33 7 chr3 32588134 32588433 -185448725 - AluJb SINE Alu -5 307 1 3135 161 29 25 chr3 32589293 32589576 -185447582 + L1MB4 LINE L1 5587 5868 -312 2306 79 0 3 chr3 32589576 32589867 -185447291 + AluY SINE Alu 1 290 -21 3135 161 29 25 chr3 32589867 32590172 -185446986 + L1MB4 LINE L1 5868 6177 -3 2174 89 72 0 chr3 32590312 32590603 -185446555 + AluSx SINE Alu 1 312 0 226 245 20 0 chr3 32591406 32591455 -185445703 + L2 LINE L2 3209 3258 -14 310 282 90 19 chr3 32591625 32591781 -185445377 - L1MC4 LINE L1 -2 8040 7874 2151 89 0 7 chr3 32592156 32592464 -185444694 + AluSc SINE Alu 3 308 0 273 311 194 0 chr3 32592681 32592784 -185444374 + L2 LINE L2 3141 3263 -9 396 324 176 23 chr3 32594208 32594554 -185442604 - L2 LINE L2 -6 3307 2909 834 281 134 75 chr3 32594597 32595381 -185441777 - L2 LINE L2 -598 2716 1887 2022 116 0 0 chr3 32596016 32596292 -185440866 - AluSg SINE Alu -30 280 5 641 253 296 18 chr3 32598544 32598936 -185438222 - L2 LINE L2 -2 3311 2811 844 216 19 12 chr3 32599048 32599210 -185437948 + FAM SINE Alu 3 165 -10 21 57 0 0 chr3 32600321 32600356 -185436802 + AT_rich Low_complexity Low_complexity 1 35 0 521 271 85 28 chr3 32600591 32600768 -185436390 - MIR SINE MIR -74 188 2 21 36 0 0 chr3 32601276 32601304 -185435854 + AT_rich Low_complexity Low_complexity 1 28 0 1832 155 7 4 chr3 32602331 32602609 -185434549 - AluJo SINE Alu -31 281 3 656 224 0 28 chr3 32602610 32602753 -185434405 - AluJo SINE Alu -170 142 4 197 0 71 0 chr3 32603569 32603597 -185433561 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 185 196 0 0 chr3 32603710 32603756 -185433402 + L3 LINE CR1 912 957 -620 503 268 147 18 chr3 32603982 32604206 -185432952 - MIR SINE MIR -2 260 8 21 57 0 0 chr3 32604280 32604315 -185432843 + AT_rich Low_complexity Low_complexity 1 35 0 1118 150 0 12 chr3 32604670 32604837 -185432321 - AluJb SINE Alu -14 298 134 2027 132 3 31 chr3 32604838 32605157 -185432001 - AluSx SINE Alu -2 310 1 186 254 48 48 chr3 32605263 32605326 -185431832 + L2 LINE L2 3209 3271 -1 1901 81 0 0 chr3 32605514 32605749 -185431409 + AluSq SINE Alu 1 235 -78 244 158 0 0 chr3 32605749 32605787 -185431371 + Alu SINE Alu 189 226 -73 808 107 18 0 chr3 32605787 32605899 -185431259 + AluSg/x SINE Alu 179 292 -17 1761 158 7 33 chr3 32605904 32606208 -185430950 + AluJb SINE Alu 5 300 -12 22 0 0 0 chr3 32606372 32606394 -185430764 + AT_rich Low_complexity Low_complexity 1 22 0 1642 175 67 3 chr3 32606866 32607151 -185430007 + AluJb SINE Alu 1 303 -9 24 32 0 0 chr3 32607204 32607235 -185429923 + AT_rich Low_complexity Low_complexity 1 31 0 387 331 31 0 chr3 32607344 32607474 -185429684 + MIR SINE MIR 19 152 -110 951 223 0 0 chr3 32607734 32607900 -185429258 + FRAM SINE Alu 1 166 0 24 32 0 0 chr3 32607979 32608010 -185429148 + AT_rich Low_complexity Low_complexity 1 31 0 232 268 163 26 chr3 32608282 32608339 -185428819 + MER5B DNA MER1_type 2 50 -128 1803 173 13 0 chr3 32608339 32608640 -185428518 + AluJo SINE Alu 1 305 -7 232 268 163 26 chr3 32608640 32608735 -185428423 + MER5B DNA MER1_type 50 175 -3 236 325 123 0 chr3 32609503 32609617 -185427541 - L2 LINE L2 0 3272 3145 624 289 42 12 chr3 32609740 32609906 -185427252 - MIR3 SINE MIR -21 187 17 870 204 102 0 chr3 32610123 32610339 -185426819 + MIR SINE MIR 4 241 -21 472 242 8 25 chr3 32610358 32610478 -185426680 - MIR SINE MIR -105 157 40 1938 167 7 3 chr3 32611210 32611516 -185425642 - AluJb SINE Alu -3 309 3 2473 233 73 39 chr3 32611522 32611640 -185425518 - L1MEc LINE L1 -4046 2350 2237 1946 138 0 16 chr3 32611640 32611951 -185425207 - AluSx SINE Alu -6 306 1 2473 233 73 39 chr3 32611951 32612333 -185424825 - L1MEc LINE L1 -4159 2237 1869 2206 103 0 3 chr3 32612333 32612649 -185424509 + AluY SINE Alu 1 315 0 2473 233 73 39 chr3 32612649 32613147 -185424011 - L1MEc LINE L1 -4527 1869 1316 2642 221 67 42 chr3 32613152 32613971 -185423187 - L1MEc LINE L1 -5226 1170 331 672 246 17 6 chr3 32613996 32614171 -185422987 - L1MEc LINE L1 -6183 213 37 459 0 0 0 chr3 32615350 32615401 -185421757 + (TG)n Simple_repeat Simple_repeat 1 51 0 1044 195 5 5 chr3 32615418 32615613 -185421545 - AluJb SINE Alu -32 280 86 259 299 52 0 chr3 32616406 32616483 -185420675 + L2 LINE L2 3223 3303 -10 287 263 187 56 chr3 32617511 32617874 -185419284 - L1ME LINE L1 -288 5878 5459 232 179 0 0 chr3 32617985 32618024 -185419134 - L1ME LINE L1 -1369 4777 4739 * 308 316 111 54 chr3 32618020 32618336 -185418822 + L1 LINE L1 4782 5115 -1031 261 0 0 0 chr3 32618713 32618742 -185418416 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 327 49 0 0 chr3 32618741 32618782 -185418376 + (TG)n Simple_repeat Simple_repeat 2 42 0 1426 223 17 59 chr3 32618824 32619178 -185417980 - MER58B DNA MER1_type -2 339 1 746 185 0 15 chr3 32619433 32619563 -185417595 + FLAM_A SINE Alu 1 128 -5 2222 115 3 0 chr3 32619566 32619870 -185417288 + AluSx SINE Alu 1 305 -7 423 230 0 0 chr3 32620302 32620376 -185416782 + MER94 DNA DNA 61 134 0 2534 72 0 3 chr3 32620640 32620946 -185416212 - AluY SINE Alu -6 305 1 310 169 36 72 chr3 32621137 32621220 -185415938 - L1MC4a LINE L1 -1873 5935 5856 247 191 167 36 chr3 32621232 32621316 -185415842 - MIR SINE MIR -79 183 89 2120 148 0 3 chr3 32621338 32621648 -185415510 + AluSx SINE Alu 1 309 -3 1814 148 88 145 chr3 32622030 32622493 -185414665 - L1MB7 LINE L1 -279 5905 5490 4962 74 2 0 chr3 32622493 32623101 -185414057 - L1PA8 LINE L1 -2 6170 5562 1814 148 88 145 chr3 32623101 32623308 -185413850 - L1MB7 LINE L1 -694 5490 5273 847 130 0 0 chr3 32623337 32623452 -185413706 - AluJb SINE Alu -197 115 1 840 222 19 5 chr3 32623454 32623661 -185413497 - L1MB7 LINE L1 -863 5283 5074 810 168 84 0 chr3 32623679 32623822 -185413336 - FRAM SINE Alu -21 155 1 1538 171 33 40 chr3 32623833 32624137 -185413021 - AluJb SINE Alu -10 302 1 3369 203 27 90 chr3 32624140 32624670 -185412488 - L1MB7 LINE L1 -1091 5055 4493 1596 169 48 14 chr3 32624670 32624960 -185412198 + AluJo SINE Alu 1 300 -12 3369 203 27 90 chr3 32624960 32624976 -185412182 - L1MB7 LINE L1 -1653 4493 4478 2703 166 19 2 chr3 32624976 32625392 -185411766 + MSTB LTR MaLR 4 426 0 3369 203 27 90 chr3 32625392 32625738 -185411420 - L1MB7 LINE L1 -1668 4478 4112 1946 135 3 35 chr3 32625738 32626056 -185411102 - AluJb SINE Alu -4 308 1 2081 95 84 0 chr3 32626059 32626344 -185410814 - AluSp SINE Alu -4 309 1 3369 203 27 90 chr3 32626344 32626556 -185410602 - L1MB7 LINE L1 -2036 4110 4015 707 183 39 28 chr3 32626561 32626741 -185410417 - L1M4 LINE L1 -961 5185 5004 385 250 59 99 chr3 32627043 32627127 -185410031 + MLT1K LTR MaLR 102 179 -409 2014 128 49 0 chr3 32627127 32627415 -185409743 + AluSx SINE Alu 1 302 -10 385 250 59 99 chr3 32627415 32627482 -185409676 + MLT1K LTR MaLR 179 247 -341 478 294 104 5 chr3 32627566 32627767 -185409391 + MLT1K LTR MaLR 366 586 -2 2669 48 0 3 chr3 32628699 32629010 -185408148 + AluY SINE Alu 1 310 -1 2191 94 17 10 chr3 32629178 32629466 -185407692 - AluSg SINE Alu -7 303 14 805 216 7 0 chr3 32630032 32630180 -185406978 + FRAM SINE Alu 25 173 -3 201 211 53 26 chr3 32630180 32630256 -185406902 - L2 LINE L2 -1377 1937 1860 1059 145 140 0 chr3 32630999 32631192 -185405966 - AluSg/x SINE Alu -10 299 80 2328 104 0 0 chr3 32631472 32631771 -185405387 - AluSx SINE Alu -13 299 1 400 263 0 10 chr3 32632747 32632846 -185404312 + MIR SINE MIR 51 148 -114 4614 121 57 57 chr3 32634555 32635340 -185401818 + LTR1 LTR ERV1 1 785 0 1622 182 0 0 chr3 32635875 32636139 -185401019 - AluJo SINE Alu -10 302 39 305 332 103 12 chr3 32636143 32636396 -185400762 - HAL1 LINE L1 0 2507 2232 424 308 33 37 chr3 32636586 32636675 -185400483 - HAL1 LINE L1 -495 2012 1924 2412 88 3 0 chr3 32636675 32636981 -185400177 - AluSp SINE Alu -6 307 1 424 308 33 37 chr3 32636981 32637105 -185400053 - HAL1 LINE L1 -583 1924 1800 19749 42 0 2 chr3 32687112 32689668 -185347490 - L1P LINE L1 -2974 3172 623 756 42 0 0 chr3 32689666 32689761 -185347397 - L1P LINE L1 -6048 98 4 * 421 273 191 9 chr3 32691133 32691390 -185345768 + L1MC1 LINE L1 5621 5808 -313 223 267 167 0 chr3 32691895 32691985 -185345173 + MIR3 SINE MIR 103 207 -1 840 238 0 22 chr3 32692824 32693009 -185344149 + MIR SINE MIR 82 262 0 1189 215 74 60 chr3 32693342 32693789 -185343369 - LTR37B LTR ERV1 -10 458 6 296 207 138 0 chr3 32693794 32693881 -185343277 + L2 LINE L2 3134 3232 -40 1390 68 37 0 chr3 32693894 32694084 -185343074 + MER30 DNA MER1_type 1 197 -33 226 270 80 15 chr3 32694264 32694401 -185342757 - L1 LINE L1 -2412 3734 3589 41019 31 21 1 chr3 32694649 32700683 -185336475 - L1PA2 LINE L1 0 6155 1 2222 116 0 7 chr3 32700916 32701218 -185335940 - AluSx SINE Alu -12 300 1 204 111 0 0 chr3 32702033 32702069 -185335089 + (CAT)n Simple_repeat Simple_repeat 3 38 0 1264 150 4 13 chr3 32702285 32702511 -185334647 + L1MC1 LINE L1 6101 6324 -9 278 269 0 15 chr3 32702678 32702745 -185334413 - L2 LINE L2 -711 2603 2538 312 261 41 7 chr3 32702753 32702896 -185334262 - L1MC5 LINE L1 0 8042 7801 3397 135 11 11 chr3 32702918 32703481 -185333677 + L1PA15 LINE L1 5600 6162 -3 21 0 0 0 chr3 32703481 32703502 -185333656 + AT_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr3 32703745 32703774 -185333384 + (CA)n Simple_repeat Simple_repeat 1 29 0 315 225 93 99 chr3 32703846 32704028 -185333130 - L1MC5 LINE L1 -579 7382 7202 469 290 61 73 chr3 32704121 32704410 -185332748 - L1ME3A LINE L1 -260 5910 5619 1024 214 27 27 chr3 32704410 32704634 -185332524 - MER58A DNA MER1_type 0 224 1 469 290 61 73 chr3 32704634 32705000 -185332158 - L1ME3A LINE L1 -551 5619 5263 696 288 105 80 chr3 32705015 32705613 -185331545 - L1ME3A LINE L1 -893 5253 4641 386 348 0 7 chr3 32705618 32705753 -185331405 - MIR SINE MIR -118 144 11 274 262 145 46 chr3 32705783 32705962 -185331196 + MIR SINE MIR 5 211 -51 1636 249 51 39 chr3 32705986 32706495 -185330663 + MLT2B1 LTR ERVL 6 520 0 5886 195 43 9 chr3 32706498 32709847 -185327311 + ERVL-B1 LTR ERVL 4 3563 -2201 2204 117 17 0 chr3 32709847 32710146 -185327012 + AluSx SINE Alu 1 304 -8 5886 195 43 9 chr3 32710146 32710197 -185326961 + ERVL-B1 LTR ERVL 3563 3611 -2153 938 189 11 0 chr3 32710197 32710382 -185326776 + MLT1B LTR MaLR 204 390 0 505 221 18 9 chr3 32711126 32711239 -185325919 - LTR16A1 LTR ERVL 0 457 344 230 301 105 0 chr3 32711516 32711649 -185325509 + L1MEc LINE L1 789 935 -5461 1918 127 25 4 chr3 32711656 32711958 -185325200 + AluSx SINE Alu 1 308 0 931 244 58 75 chr3 32712102 32712735 -185324423 - HAL1 LINE L1 -165 2342 1548 1434 106 45 39 chr3 32712876 32713188 -185323970 - L1PBa LINE L1 -4115 2748 2435 764 298 11 0 chr3 32713194 32713476 -185323682 - L1PBa LINE L1 -6573 290 6 408 271 42 54 chr3 32713490 32713656 -185323502 + L2 LINE L2 3146 3309 -4 368 309 0 54 chr3 32713731 32713880 -185323278 + MIR SINE MIR 51 191 -71 495 259 45 68 chr3 32713924 32714144 -185323014 - MIR SINE MIR -2 260 46 216 200 0 0 chr3 32714291 32714336 -185322822 + T-rich Low_complexity Low_complexity 1 45 0 17412 35 3 1 chr3 32714339 32717230 -185319928 - L1PA4 LINE L1 -3 6152 3256 759 250 7 0 chr3 32719344 32719488 -185317670 + Charlie1 DNA MER1_type 1 145 -2616 4859 115 7 12 chr3 32719489 32720230 -185316928 + L1P LINE L1 762 1498 -4648 271 204 0 0 chr3 32720333 32720382 -185316776 + MLT1G LTR MaLR 541 589 -1 834 314 80 58 chr3 32720524 32720755 -185316403 - L2 LINE L2 -190 3082 2857 2004 137 0 22 chr3 32720755 32721069 -185316089 + AluSq SINE Alu 1 307 -6 834 314 80 58 chr3 32721069 32721389 -185315769 - L2 LINE L2 -415 2857 2493 2195 125 0 22 chr3 32721389 32721708 -185315450 + AluSx SINE Alu 1 312 0 834 314 80 58 chr3 32721708 32721936 -185315222 - L2 LINE L2 -779 2493 2271 454 278 231 38 chr3 32721974 32722294 -185314864 - MLT1J2 LTR MaLR -10 440 59 448 124 225 124 chr3 32722317 32722381 -185314777 - MER53 DNA DNA -3 186 130 2339 82 10 0 chr3 32722381 32722672 -185314486 + AluSp SINE Alu 1 294 -19 448 124 225 124 chr3 32722672 32722776 -185314382 - MER53 DNA DNA -59 130 1 2067 113 39 0 chr3 32723060 32723344 -185313814 + AluSg1 SINE Alu 1 295 -14 1943 240 66 35 chr3 32723819 32724394 -185312764 - MLT1E LTR MaLR 0 593 1 21 36 0 0 chr3 32724722 32724750 -185312408 + AT_rich Low_complexity Low_complexity 1 28 0 1818 155 0 7 chr3 32726651 32726941 -185310217 + AluJb SINE Alu 2 289 -23 445 149 40 0 chr3 32726968 32727042 -185310116 + MER81 DNA DNA 36 112 -2 556 145 24 0 chr3 32727359 32727442 -185309716 + AluJb SINE Alu 3 87 -225 1435 132 48 0 chr3 32727631 32727858 -185309300 + AluJb SINE Alu 63 300 -12 1661 128 4 0 chr3 32728192 32728419 -185308739 - AluSx SINE Alu -79 233 6 473 299 21 43 chr3 32728423 32728748 -185308410 - L1M4 LINE L1 -1452 4694 4377 1563 163 83 0 chr3 32728770 32729047 -185308111 + AluJb SINE Alu 5 304 -8 2221 131 0 0 chr3 32729098 32729404 -185307754 - AluJb SINE Alu -6 306 1 341 220 51 51 chr3 32729832 32729950 -185307208 + L1M2 LINE L1 5593 5710 -602 2254 104 0 10 chr3 32730274 32730573 -185306585 - AluSx SINE Alu -16 296 1 2107 111 20 7 chr3 32730573 32730871 -185306287 - AluSx SINE Alu -9 303 2 390 245 53 49 chr3 32730877 32731015 -185306143 - L1M3 LINE L1 -737 5434 5283 2268 107 0 0 chr3 32731015 32731315 -185305843 - AluSx SINE Alu -12 300 1 390 245 53 49 chr3 32731315 32731412 -185305746 - L1M3 LINE L1 -888 5283 5188 2957 130 54 12 chr3 32731661 32732145 -185305013 - L1MA8 LINE L1 -2 6289 5786 27 0 0 0 chr3 32732291 32732318 -185304840 + AT_rich Low_complexity Low_complexity 1 27 0 718 263 103 62 chr3 32732319 32732369 -185304789 - HAL1 LINE L1 -28 2479 2432 1699 140 19 53 chr3 32732369 32732691 -185304467 + AluJo SINE Alu 1 311 -1 718 263 103 62 chr3 32732691 32733042 -185304116 - HAL1 LINE L1 -75 2432 2042 2378 95 0 3 chr3 32733042 32733347 -185303811 - AluSx SINE Alu -8 304 1 718 263 103 62 chr3 32733347 32733557 -185303601 - HAL1 LINE L1 -465 2042 1842 1190 70 0 19 chr3 32733561 32733717 -185303441 - AluSg1 SINE Alu -156 153 1 248 214 43 29 chr3 32733726 32733796 -185303362 - HAL1 LINE L1 -698 1809 1739 1329 275 43 88 chr3 32733816 32734290 -185302868 - HAL1 LINE L1 -1048 1459 965 1725 98 0 5 chr3 32734290 32734514 -185302644 - AluSg/x SINE Alu -18 292 70 1329 275 43 88 chr3 32734514 32734656 -185302502 - HAL1 LINE L1 -1542 965 818 2260 116 0 0 chr3 32734656 32734957 -185302201 - AluSq SINE Alu -12 301 1 1995 136 7 3 chr3 32734959 32735254 -185301904 - AluSx SINE Alu -16 296 1 1329 275 43 88 chr3 32735254 32735722 -185301436 - HAL1 LINE L1 -1690 817 420 1025 292 113 3 chr3 32735787 32736178 -185300980 + LTR16A LTR ERVL 2 435 -15 412 232 161 0 chr3 32736228 32736340 -185300818 - LTR16A LTR ERVL -316 134 5 315 300 47 112 chr3 32736448 32736554 -185300604 + MIR SINE MIR 26 110 -152 890 194 94 0 chr3 32736554 32736714 -185300444 - FAM SINE Alu 0 175 1 315 300 47 112 chr3 32736714 32736840 -185300318 + MIR SINE MIR 110 243 -19 218 345 0 0 chr3 32736947 32737002 -185300156 + L3 LINE CR1 578 632 -945 26 64 0 0 chr3 32737002 32737049 -185300109 + AT_rich Low_complexity Low_complexity 1 47 0 282 95 0 0 chr3 32737409 32737451 -185299707 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2767 153 10 85 chr3 32737523 32738113 -185299045 - MER52A LTR ERV1 0 1755 1210 3044 178 193 63 chr3 32738216 32739338 -185297820 - MER52A LTR ERV1 -406 1349 1 640 275 96 23 chr3 32739395 32739701 -185297457 - L1ME LINE L1 -526 5636 5299 2198 105 3 0 chr3 32739701 32739995 -185297163 - AluSg SINE Alu -15 295 1 640 275 96 23 chr3 32739995 32740041 -185297117 - L1ME LINE L1 -863 5299 5258 789 169 23 8 chr3 32740178 32740308 -185296850 - FLAM_C SINE Alu -1 132 1 453 224 64 8 chr3 32740756 32740881 -185296277 - L1ME LINE L1 -1454 4692 4561 353 340 67 10 chr3 32740918 32741112 -185296046 - L1ME LINE L1 -1674 4472 4268 23 0 0 0 chr3 32741815 32741838 -185295320 + AT_rich Low_complexity Low_complexity 1 23 0 395 318 61 7 chr3 32741924 32742072 -185295086 - L2 LINE L2 -5 3267 3112 364 229 62 26 chr3 32742149 32742265 -185294893 + MLT1E LTR MaLR 20 143 -412 1942 170 0 0 chr3 32742425 32742737 -185294421 - AluJb SINE Alu 0 312 1 2262 101 7 3 chr3 32742772 32743078 -185294080 - AluSg1 SINE Alu -2 307 1 233 269 0 0 chr3 32743767 32743819 -185293339 - L3 LINE CR1 -781 796 745 * 465 306 15 58 chr3 32743809 32744015 -185293143 + L3 LINE CR1 799 995 -582 229 239 46 46 chr3 32744026 32744156 -185293002 - L1M LINE L1 -779 5395 5266 230 313 97 23 chr3 32744285 32744461 -185292697 - L1M4 LINE L1 -1040 5106 4918 938 124 8 0 chr3 32744502 32744631 -185292527 - FLAM_C SINE Alu -3 130 1 487 212 8 61 chr3 32744935 32745067 -185292091 + L2 LINE L2 3185 3309 -4 237 383 87 7 chr3 32745095 32745244 -185291914 + L2 LINE L2 2917 3077 -195 198 0 0 0 chr3 32745278 32745300 -185291858 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 3739 67 5 0 chr3 32745300 32745746 -185291412 - L1PA7 LINE L1 -10 6144 5697 261 200 62 15 chr3 32746118 32746183 -185290975 - L1MA10 LINE L1 0 6334 6267 923 149 0 8 chr3 32746343 32746477 -185290681 + FLAM_C SINE Alu 1 133 0 458 284 0 45 chr3 32747228 32747383 -185289775 + MIR SINE MIR 2 149 -113 526 279 82 19 chr3 32747630 32747838 -185289320 + LTR33 LTR ERVL 301 521 0 727 286 36 14 chr3 32749133 32749353 -185287805 + MIR SINE MIR 26 250 -12 3102 147 8 77 chr3 32749766 32750405 -185286753 - L1 LINE L1 -1141 5005 4411 2413 125 35 13 chr3 32750405 32750782 -185286376 - Tigger2 DNA MER2_type 0 2718 2334 5087 183 32 7 chr3 32750928 32751982 -185285176 - L1 LINE L1 -2502 3644 2564 350 144 0 0 chr3 32752023 32752091 -185285067 - L1MC4 LINE L1 -261 7628 7480 300 222 49 0 chr3 32752182 32752263 -185284895 + L1ME3A LINE L1 5793 5877 -293 200 190 35 52 chr3 32752812 32752870 -185284288 - L2 LINE L2 -32 3281 3225 531 235 207 35 chr3 32752879 32753198 -185283960 - L1M4 LINE L1 -978 5168 4795 969 287 42 44 chr3 32753313 32753554 -185283604 - L1MEc LINE L1 -2200 3929 3689 2143 129 23 0 chr3 32753554 32753856 -185283302 - AluJb SINE Alu -3 309 1 969 287 42 44 chr3 32753856 32754182 -185282976 - L1MEc LINE L1 -2440 3689 3363 529 276 57 70 chr3 32754181 32754359 -185282799 - L1MEc LINE L1 -3311 2818 2639 * 1812 135 0 96 chr3 32754359 32754565 -185282593 - AluJo SINE Alu -10 302 139 1953 143 3 10 chr3 32754565 32754896 -185282262 + AluSq SINE Alu 1 313 0 1812 135 0 96 chr3 32754896 32755023 -185282135 - AluJo SINE Alu -173 139 1 529 276 57 70 chr3 32755023 32755289 -185281869 - L1MEc LINE L1 -3490 2639 2380 2206 107 140 48 chr3 32755289 32755356 -185281802 - MSTA LTR MaLR 0 428 369 1824 146 59 3 chr3 32755356 32755643 -185281515 + AluSx SINE Alu 1 303 -9 2206 107 140 48 chr3 32755643 32755967 -185281191 - MSTA LTR MaLR -59 369 1 529 276 57 70 chr3 32755967 32756051 -185281107 - L1MEc LINE L1 -3749 2380 2296 702 266 47 21 chr3 32756051 32756284 -185280874 + LTR33 LTR ERVL 1 239 -282 312 241 37 0 chr3 32756500 32756608 -185280550 - L1MEc LINE L1 -3858 2271 2160 192 40 0 0 chr3 32756643 32756668 -185280490 + (TA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr3 32756696 32756719 -185280439 + AT_rich Low_complexity Low_complexity 1 23 0 546 135 54 9 chr3 32756831 32756942 -185280216 - LTR9B LTR ERV1 -84 560 445 427 321 103 31 chr3 32757172 32757351 -185279807 - L1MEc LINE L1 -4573 1737 1572 1746 171 3 22 chr3 32757351 32757666 -185279492 - AluSx SINE Alu -3 309 1 427 321 103 31 chr3 32757666 32757875 -185279283 - L1MEc LINE L1 -4738 1572 1321 2230 120 3 0 chr3 32757886 32758194 -185278964 - AluSp SINE Alu -4 309 1 450 309 23 28 chr3 32758229 32758446 -185278712 - L1MEc LINE L1 -4893 1226 1011 683 279 46 67 chr3 32758482 32758873 -185278285 - L1MEc LINE L1 -5269 850 468 199 386 8 38 chr3 32759301 32759433 -185277725 + L2 LINE L2 2840 2967 -305 456 176 0 0 chr3 32759722 32759796 -185277362 - MER96 DNA MER1_type? -8 167 94 433 219 125 0 chr3 32759909 32760005 -185277153 + L2 LINE L2 3206 3313 0 362 372 7 7 chr3 32760291 32760436 -185276722 - MER5B DNA MER1_type -30 148 4 886 271 118 36 chr3 32761559 32762058 -185275100 - MLT1H1 LTR MaLR 0 555 16 598 270 58 5 chr3 32762105 32762294 -185274864 - MIR SINE MIR -59 203 5 317 219 41 0 chr3 32762876 32762949 -185274209 - L2 LINE L2 -55 3217 3142 355 282 86 55 chr3 32763001 32763256 -185273902 + MLT1J LTR MaLR 2 264 -247 1032 154 21 27 chr3 32763601 32763789 -185273369 - MER53 DNA DNA 0 189 3 194 194 0 0 chr3 32763839 32763875 -185273283 + L2 LINE L2 3262 3297 -16 770 188 65 24 chr3 32764315 32764485 -185272673 - FRAM SINE Alu -6 170 1 235 347 107 20 chr3 32766476 32766626 -185270532 + L2 LINE L2 2455 2617 -697 205 288 17 0 chr3 32766647 32766706 -185270452 + MIR SINE MIR 14 73 -189 351 0 0 0 chr3 32766706 32766745 -185270413 + (TG)n Simple_repeat Simple_repeat 1 39 0 2161 113 3 0 chr3 32766764 32767046 -185270112 - AluSp SINE Alu -30 283 1 434 279 71 7 chr3 32767050 32767190 -185269968 + MIR SINE MIR 70 218 -44 624 254 108 75 chr3 32767360 32767722 -185269436 + MLT1H LTR MaLR 110 490 -59 2265 12 0 4 chr3 32767722 32767971 -185269187 - AluY SINE Alu -4 307 60 624 254 108 75 chr3 32767971 32768034 -185269124 + MLT1H LTR MaLR 490 549 0 441 268 57 0 chr3 32768088 32768211 -185268947 - MER94 DNA DNA -3 131 2 204 346 48 39 chr3 32768693 32768797 -185268361 + L2 LINE L2 3160 3264 -8 557 267 86 14 chr3 32768861 32769071 -185268087 - LTR16A LTR ERVL -10 440 216 1033 147 99 4 chr3 32769306 32769538 -185267620 + L1PB1 LINE L1 5894 6147 -4 23 0 0 0 chr3 32769538 32769561 -185267597 + AT_rich Low_complexity Low_complexity 1 23 0 414 281 7 33 chr3 32769578 32769731 -185267427 - L2 LINE L2 -144 3169 3021 2097 113 0 7 chr3 32769736 32770029 -185267129 + AluJb SINE Alu 5 295 -17 496 173 0 0 chr3 32770054 32770135 -185267023 + AluJ/FLAM SINE Alu 2 82 -230 1324 234 50 50 chr3 32770148 32770576 -185266582 - L2 LINE L2 -302 3011 2586 2302 43 3 0 chr3 32770576 32770858 -185266300 + L1PA5 LINE L1 5869 6151 -3 909 138 132 0 chr3 32770859 32771026 -185266132 + L1MC1 LINE L1 5857 6045 -288 5061 178 5 24 chr3 32771145 32772527 -185264631 - L1P5 LINE L1 -680 5471 4120 180 111 0 0 chr3 32773191 32773218 -185263940 + (CA)n Simple_repeat Simple_repeat 2 28 0 323 350 14 14 chr3 32774030 32774170 -185262988 + L2 LINE L2 2721 2860 -454 2035 144 0 3 chr3 32774170 32774468 -185262690 - AluJb SINE Alu -6 306 10 262 146 0 0 chr3 32774562 32774603 -185262555 - L2 LINE L2 -5 3308 3268 462 259 105 41 chr3 32774728 32774994 -185262164 + MLT1G1 LTR MaLR 8 290 -305 201 74 0 0 chr3 32776266 32776293 -185260865 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 47 53 0 0 chr3 32778056 32778131 -185259027 + GC_rich Low_complexity Low_complexity 1 75 0 779 146 0 23 chr3 32778345 32778475 -185258683 - AluJo SINE Alu -151 161 35 41 58 0 0 chr3 32778609 32778678 -185258480 + AT_rich Low_complexity Low_complexity 1 69 0 1386 172 169 12 chr3 32778687 32779019 -185258139 - MLT2C1 LTR ERVL 0 397 14 26 0 0 0 chr3 32779116 32779142 -185258016 + AT_rich Low_complexity Low_complexity 1 26 0 4925 85 17 1 chr3 32779937 32780628 -185256530 + L1PA8 LINE L1 5471 6172 0 1117 161 0 6 chr3 32781094 32781274 -185255884 + AluJb SINE Alu 120 298 -14 21 36 0 0 chr3 32781642 32781670 -185255488 + AT_rich Low_complexity Low_complexity 1 28 0 1123 62 0 0 chr3 32782227 32782373 -185254785 - L1PA8 LINE L1 -8 6164 6019 212 375 38 51 chr3 32782618 32782853 -185254305 + L2 LINE L2 2627 2858 -456 607 262 24 6 chr3 32782926 32783094 -185254064 - MIR SINE MIR -24 238 68 1506 205 30 0 chr3 32784825 32785162 -185251996 + L1MB7 LINE L1 5825 6171 -13 192 250 0 0 chr3 32785835 32785875 -185251283 - L2 LINE L2 -236 3036 2997 261 324 44 29 chr3 32786850 32786986 -185250172 + MIR SINE MIR 79 216 -46 21 0 0 0 chr3 32787020 32787041 -185250117 + AT_rich Low_complexity Low_complexity 1 21 0 781 180 101 39 chr3 32787351 32787529 -185249629 - MER5A DNA MER1_type 0 189 1 539 314 68 39 chr3 32787540 32787887 -185249271 - L1M4 LINE L1 -2505 3641 3283 283 299 64 32 chr3 32787930 32788181 -185248977 - L1M4 LINE L1 -2928 3218 2960 252 307 52 25 chr3 32788563 32788889 -185248269 + L1ME3A LINE L1 3623 3957 -2189 329 349 50 42 chr3 32789518 32789779 -185247379 + L1ME3A LINE L1 4077 4339 -1807 985 300 36 70 chr3 32789781 32790198 -185246960 - L2 LINE L2 -3 3310 2908 1584 208 152 9 chr3 32790571 32791013 -185246145 - MLT1D LTR MaLR 0 505 1 265 235 0 43 chr3 32791258 32791388 -185245770 + L1ME3A LINE L1 5316 5441 -2408 1233 216 154 38 chr3 32791393 32791842 -185245316 - MLT1D LTR MaLR -4 501 1 431 274 98 65 chr3 32791960 32792296 -185244862 + L1ME3A LINE L1 5462 5808 -313 211 306 24 57 chr3 32792423 32792547 -185244611 + MIR3 SINE MIR 37 156 -52 244 314 105 0 chr3 32792778 32792883 -185244275 + MARNA DNA Mariner 425 540 -46 213 65 0 0 chr3 32792883 32792914 -185244244 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2617 45 0 3 chr3 32793406 32793718 -185243440 - AluY SINE Alu 0 311 1 299 309 31 10 chr3 32793965 32794062 -185243096 + MIR SINE MIR 88 186 -76 401 242 113 26 chr3 32794319 32794513 -185242645 + L1ME3A LINE L1 5959 6169 -1 337 350 62 12 chr3 32794628 32794788 -185242370 - MER5A DNA MER1_type -4 185 18 660 187 26 26 chr3 32794808 32794963 -185242195 - MER5B DNA MER1_type -18 160 6 339 288 82 34 chr3 32796662 32796681 -185240477 - MIR3 SINE MIR -32 176 159 712 162 246 0 chr3 32796681 32796848 -185240310 - MER3 DNA MER1_type 0 209 2 339 288 82 34 chr3 32796848 32796974 -185240184 - MIR3 SINE MIR -49 159 24 528 256 109 56 chr3 32797922 32798243 -185238915 - MLT1L LTR MaLR -82 533 196 984 232 152 45 chr3 32798267 32798759 -185238399 - MLT1H LTR MaLR -4 545 1 22 35 0 0 chr3 32799721 32799750 -185237408 + AT_rich Low_complexity Low_complexity 1 29 0 402 274 91 32 chr3 32799995 32800181 -185236977 - L2 LINE L2 -5 3267 3071 651 245 175 37 chr3 32800624 32800758 -185236400 - L1MC/D LINE L1 -1985 5823 5709 186 103 0 0 chr3 32800758 32800787 -185236371 + (CATATA)n Simple_repeat Simple_repeat 6 34 0 651 245 175 37 chr3 32800787 32800921 -185236237 - L1MC/D LINE L1 -2099 5709 5518 1931 163 46 0 chr3 32800947 32801272 -185235886 - MER2 DNA MER2_type -1 343 4 203 286 0 0 chr3 32803150 32803199 -185233959 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 356 169 14 0 chr3 32803259 32803330 -185233828 - MER116 DNA Mariner -8 72 1 839 232 40 16 chr3 32803732 32803982 -185233176 + MER112 DNA MER1_type 1 256 0 1514 192 10 70 chr3 32806446 32806832 -185230326 - MLT1A2 LTR MaLR -11 363 1 35643 33 25 1 chr3 32807091 32812495 -185224663 - L1PA3 LINE L1 0 6155 617 732 43 0 0 chr3 32812495 32812587 -185224571 - L1PA3 LINE L1 -6054 92 1 634 194 35 14 chr3 32812643 32812787 -185224371 - Charlie4 DNA MER1_type 0 1961 1815 1054 286 99 50 chr3 32814142 32814699 -185222459 - MLT1K LTR MaLR -4 584 1 2326 94 0 13 chr3 32815778 32816086 -185221072 + AluSg SINE Alu 6 309 -1 1418 195 30 30 chr3 32817152 32817450 -185219708 + AluJo SINE Alu 2 299 -13 390 292 76 32 chr3 32817716 32817901 -185219257 - MIR SINE MIR -21 241 49 241 331 159 0 chr3 32819087 32819244 -185217914 + L1M3 LINE L1 5365 5546 -634 751 294 134 34 chr3 32820451 32820808 -185216350 + L3 LINE CR1 1165 1557 -20 21 0 0 0 chr3 32822149 32822170 -185214988 + AT_rich Low_complexity Low_complexity 1 21 0 2652 66 20 3 chr3 32822211 32822543 -185214615 - L1P3 LINE L1 -426 5728 5388 2271 69 76 0 chr3 32822543 32822829 -185214329 + L1PA7 LINE L1 5842 6152 -2 2652 66 20 3 chr3 32822829 32822845 -185214313 - L1P3 LINE L1 -766 5388 5374 1038 189 17 0 chr3 32823892 32824072 -185213086 - MER5A DNA MER1_type -6 183 1 25 0 0 0 chr3 32824408 32824433 -185212725 + AT_rich Low_complexity Low_complexity 1 25 0 1078 291 74 21 chr3 32824444 32825038 -185212120 + L2 LINE L2 2690 3312 -1 295 320 88 20 chr3 32826414 32826561 -185210597 + MIR SINE MIR 8 164 -98 1772 184 42 101 chr3 32826563 32827057 -185210101 + LTR40c LTR ERVL 1 465 0 2332 101 0 0 chr3 32827216 32827513 -185209645 + AluSx SINE Alu 1 297 -15 2054 175 52 70 chr3 32828009 32828523 -185208635 - MLT1D LTR MaLR 0 505 1 2080 175 91 0 chr3 32828974 32829357 -185207801 - MSTB LTR MaLR 0 426 9 387 257 50 29 chr3 32829481 32829621 -185207537 - L2 LINE L2 0 3313 3171 418 250 0 60 chr3 32829706 32829806 -185207352 - MER5A DNA MER1_type -87 102 9 413 314 17 29 chr3 32829822 32829997 -185207161 - MER5B DNA MER1_type 0 178 6 767 229 27 33 chr3 32830041 32830224 -185206934 + MER5A DNA MER1_type 6 187 -2 370 318 110 17 chr3 32830234 32830407 -185206751 - MER5B DNA MER1_type 0 189 1 885 144 0 4 chr3 32831660 32831880 -185205278 + AluJb SINE Alu 5 300 -12 418 249 112 66 chr3 32832053 32832177 -185204981 + MIR SINE MIR 43 181 -81 2103 108 17 0 chr3 32832177 32832464 -185204694 + AluSx SINE Alu 1 292 -20 418 249 112 66 chr3 32832464 32832536 -185204622 + MIR SINE MIR 181 248 -14 1015 120 0 0 chr3 32832620 32832762 -185204396 + FRAM SINE Alu 23 164 -12 196 98 24 24 chr3 32832762 32832803 -185204355 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 873 248 16 50 chr3 32832993 32833251 -185203907 - MIR SINE MIR 0 262 14 21 36 0 0 chr3 32833289 32833317 -185203841 + AT_rich Low_complexity Low_complexity 1 28 0 1771 216 18 17 chr3 32833501 32833908 -185203250 + L1ME1 LINE L1 5677 6080 -86 1145 149 6 0 chr3 32833908 32834076 -185203082 - AluSg/x SINE Alu -10 300 132 2391 93 0 0 chr3 32834076 32834378 -185202780 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 32835391 32835416 -185201742 + GC_rich Low_complexity Low_complexity 1 25 0 2654 106 13 8 chr3 32835639 32836016 -185201142 + L1PA16 LINE L1 5775 6153 -13 446 349 149 19 chr3 32836220 32836481 -185200677 - L2 LINE L2 0 3272 2978 640 290 63 20 chr3 32836511 32836763 -185200395 + L1MEc LINE L1 60 322 -6074 1074 156 58 44 chr3 32836765 32836975 -185200183 + MLT2B2 LTR ERVL 3 209 -306 207 0 0 0 chr3 32836975 32836998 -185200160 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 261 0 0 0 chr3 32836997 32837026 -185200132 + (TG)n Simple_repeat Simple_repeat 2 30 0 1074 156 58 44 chr3 32836998 32837040 -185200118 + MLT2B2 LTR ERVL 209 230 -285 207 0 0 0 chr3 32837091 32837114 -185200044 + (TG)n Simple_repeat Simple_repeat 2 24 0 1368 225 43 33 chr3 32837121 32837450 -185199708 + MLT2B3 LTR ERVL 223 554 0 977 286 48 60 chr3 32837450 32838052 -185199106 + L1MEc LINE L1 318 912 -5484 279 248 153 29 chr3 32838434 32838571 -185198587 - MIR SINE MIR -14 248 95 504 294 65 33 chr3 32838668 32838882 -185198276 + MIR SINE MIR 31 251 -11 891 245 22 0 chr3 32839020 32839204 -185197954 + MER5A DNA MER1_type 1 188 -1 2614 40 0 3 chr3 32840471 32840772 -185196386 + AluY SINE Alu 1 300 -11 2149 135 0 0 chr3 32840987 32841299 -185195859 + AluSx SINE Alu 1 312 0 210 305 61 0 chr3 32841365 32841447 -185195711 - MIR SINE MIR -2 260 174 248 0 0 30 chr3 32841582 32841615 -185195543 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2012 124 7 10 chr3 32841625 32841931 -185195227 - AluSx SINE Alu -7 305 1 1052 246 176 37 chr3 32842030 32842461 -185194697 + MLT1H LTR MaLR 1 491 -58 397 198 90 18 chr3 32842479 32842590 -185194568 + L1MC5 LINE L1 7270 7388 -573 1298 251 104 47 chr3 32844586 32845093 -185192065 - MLT1H1 LTR MaLR 0 555 20 2343 198 24 53 chr3 32845285 32845795 -185191363 + LTR42 LTR ERVL 1 495 0 406 302 103 16 chr3 32845858 32846100 -185191058 + LTR16C LTR ERVL 186 448 -43 212 209 0 0 chr3 32846154 32846197 -185190961 + L3 LINE CR1 1529 1571 -6 1484 133 29 82 chr3 32846221 32846500 -185190658 - AluJo SINE Alu -15 297 34 2199 158 24 0 chr3 32846874 32847210 -185189948 + MER7A DNA MER2_type 1 342 -4 1727 142 131 71 chr3 32848594 32848960 -185188198 + MLT1B LTR MaLR 1 388 -2 2092 85 16 72 chr3 32848975 32849293 -185187865 - AluSq SINE Alu -13 300 1 2295 115 0 3 chr3 32849295 32849607 -185187551 - AluSx SINE Alu -1 311 1 826 204 80 6 chr3 32849628 32849804 -185187354 - MER5A DNA MER1_type 0 189 1 694 239 149 36 chr3 32850237 32850572 -185186586 + MER115 DNA AcHobo 56 428 -265 554 223 70 38 chr3 32850566 32850723 -185186435 + MER63A DNA MER1_type 49 210 0 * 251 128 0 0 chr3 32850955 32850994 -185186164 - MSTA LTR MaLR -2 426 388 1950 141 10 0 chr3 32850994 32851299 -185185859 + AluSx SINE Alu 1 308 -4 1982 157 0 10 chr3 32851307 32851613 -185185545 + AluJb SINE Alu 1 303 -9 566 28 14 0 chr3 32851624 32851696 -185185462 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 2409 87 0 0 chr3 32851726 32852024 -185185134 + AluSx SINE Alu 1 298 -14 1543 159 165 26 chr3 32852025 32852371 -185184787 - MSTA LTR MaLR -34 394 1 362 249 189 30 chr3 32852477 32852678 -185184480 + MLT1L LTR MaLR 203 435 -180 668 119 0 79 chr3 32852715 32852760 -185184398 - L1MB2 LINE L1 -5 6166 6119 2424 84 0 0 chr3 32852760 32853059 -185184099 - AluY SINE Alu -12 299 1 668 119 0 79 chr3 32853059 32853139 -185184019 - L1MB2 LINE L1 -52 6119 6051 922 167 25 0 chr3 32853142 32853304 -185183854 - L1MA3 LINE L1 -5 6300 6135 3369 143 76 16 chr3 32853305 32853912 -185183246 - L1MB2 LINE L1 -112 6059 5417 409 125 0 91 chr3 32854005 32854093 -185183065 - AluJo SINE Alu -10 302 223 849 203 0 6 chr3 32854093 32854256 -185182902 - AluJo SINE Alu -150 162 1 1041 163 44 5 chr3 32854456 32854659 -185182499 + L1ME2 LINE L1 5693 5903 -261 899 221 82 4 chr3 32854661 32854924 -185182234 - MSTD LTR MaLR -4 392 88 2330 106 0 0 chr3 32854925 32855237 -185181921 - AluSx SINE Alu 0 312 1 1033 130 7 0 chr3 32855497 32855666 -185181492 + AluSg/x SINE Alu 140 309 0 342 0 0 0 chr3 32856732 32856770 -185180388 + (A)n Simple_repeat Simple_repeat 1 38 0 312 301 49 14 chr3 32856796 32856939 -185180219 - MER103 DNA DNA -17 149 2 386 207 60 10 chr3 32856992 32857104 -185180054 + MER52C LTR ERV1 3 99 -1179 590 179 0 0 chr3 32857136 32857242 -185179916 - AluSg/x SINE Alu -9 301 196 4946 160 39 115 chr3 32857244 32858570 -185178588 + MER52A LTR ERV1 461 1755 0 251 152 0 0 chr3 32858856 32858902 -185178256 + LTR66 LTR ERVL 394 439 -171 228 216 0 0 chr3 32858904 32858955 -185178203 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 32179 54 7 1 chr3 32860167 32865074 -185172084 + L1PA3 LINE L1 1220 6153 -2 5695 51 4 23 chr3 32865092 32865783 -185171375 + L1PA5 LINE L1 5475 6152 -2 284 48 24 0 chr3 32865802 32865844 -185171314 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1330 148 33 86 chr3 32865845 32866276 -185170882 + Charlie1 DNA MER1_type 132 2761 0 964 65 0 0 chr3 32866357 32866480 -185170678 + L1PA4 LINE L1 6029 6151 -4 243 0 0 0 chr3 32868105 32868132 -185169026 + (T)n Simple_repeat Simple_repeat 1 27 0 217 182 23 0 chr3 32868988 32869032 -185168126 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 304 252 7 chr3 32870283 32870418 -185166740 - MIR3 SINE MIR -11 197 30 838 233 93 43 chr3 32874261 32874583 -185162575 + MER113 DNA MER1_type? 136 473 -48 261 333 78 0 chr3 32874632 32874722 -185162436 - MIR3 SINE MIR -48 160 64 1244 223 49 21 chr3 32874758 32875086 -185162072 - MLT1E LTR MaLR -256 337 1 253 203 94 0 chr3 32875088 32875152 -185162006 + L1MC5 LINE L1 7859 7928 -33 1659 143 56 28 chr3 32875239 32875526 -185161632 + AluJb SINE Alu 1 295 -17 247 327 140 20 chr3 32875611 32875761 -185161397 - L2 LINE L2 -3 3269 3102 401 259 149 45 chr3 32875854 32876143 -185161015 + MLT1H1 LTR MaLR 1 319 -236 226 132 0 0 chr3 32876144 32876182 -185160976 + MLT1H1 LTR MaLR 489 526 -4 * 325 185 0 0 chr3 32876150 32876204 -185160954 + MLT1G1 LTR MaLR 541 594 -1 358 293 66 9 chr3 32877415 32877521 -185159637 - MIR3 SINE MIR -85 123 12 399 233 19 19 chr3 32877780 32877883 -185159275 - MIR SINE MIR -56 206 104 234 0 0 0 chr3 32877992 32878018 -185159140 + (T)n Simple_repeat Simple_repeat 1 26 0 406 148 333 9 chr3 32878372 32878480 -185158678 - MER5A DNA MER1_type -45 144 2 644 314 89 3 chr3 32879758 32880095 -185157063 + L1ME3A LINE L1 5477 5842 -279 522 197 179 0 chr3 32880139 32880256 -185156902 + L1ME3A LINE L1 6033 6170 0 242 208 0 0 chr3 32880314 32880362 -185156796 + L1MC4 LINE L1 6658 6705 -1337 2353 163 14 3 chr3 32880654 32881015 -185156143 + MLT1A1 LTR MaLR 1 365 0 579 270 6 31 chr3 32881549 32881712 -185155446 - MIR SINE MIR -16 246 88 226 325 74 49 chr3 32882011 32882174 -185154984 + MIR SINE MIR 84 250 -12 258 32 0 0 chr3 32882823 32882854 -185154304 + (GA)n Simple_repeat Simple_repeat 2 32 0 250 209 374 0 chr3 32883277 32883392 -185153766 + MER5A DNA MER1_type 9 166 -23 865 162 132 6 chr3 32884097 32884264 -185152894 - MER5A DNA MER1_type -1 188 1 334 120 27 0 chr3 32884952 32885027 -185152131 + (TA)n Simple_repeat Simple_repeat 2 78 0 24 0 0 0 chr3 32885035 32885059 -185152099 + AT_rich Low_complexity Low_complexity 1 24 0 555 277 242 18 chr3 32886401 32887102 -185150056 - L2 LINE L2 -13 3300 2454 297 290 89 32 chr3 32887645 32887769 -185149389 - MIR SINE MIR -130 132 2 1824 181 0 6 chr3 32888503 32888817 -185148341 - AluJo SINE Alu 0 312 1 598 242 140 69 chr3 32889407 32889984 -185147174 - MLT1H1 LTR MaLR 0 590 1 392 244 224 49 chr3 32890513 32890759 -185146399 + L2 LINE L2 3024 3312 -1 682 290 108 0 chr3 32891223 32891437 -185145721 + MIR SINE MIR 4 240 -22 348 257 83 35 chr3 32891835 32891979 -185145179 + MIR SINE MIR 16 166 -96 319 232 95 21 chr3 32892484 32892579 -185144579 + MIR SINE MIR 95 196 -66 606 251 72 39 chr3 32893466 32893673 -185143485 + MIR SINE MIR 14 227 -35 807 194 34 23 chr3 32893808 32893983 -185143175 - MIR3 SINE MIR -2 206 30 534 259 161 5 chr3 32894273 32894466 -185142692 - MIR SINE MIR -21 241 19 183 204 0 0 chr3 32894926 32894970 -185142188 + T-rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 32896410 32896446 -185140712 + AT_rich Low_complexity Low_complexity 1 36 0 418 322 23 12 chr3 32896841 32897012 -185140146 - MIR SINE MIR -19 243 71 2171 117 0 0 chr3 32897267 32897557 -185139601 - AluSx SINE Alu -22 290 1 924 135 0 0 chr3 32897557 32897690 -185139468 - AluSq/x SINE Alu -177 135 3 2064 104 0 4 chr3 32901822 32902090 -185135068 + AluSq SINE Alu 13 279 -34 363 44 0 0 chr3 32902094 32902139 -185135019 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 342 307 137 0 chr3 32902319 32902472 -185134686 - MIR3 SINE MIR -5 203 30 357 320 58 0 chr3 32903462 32903565 -185133593 - L2 LINE L2 -8 3264 3156 783 136 55 1 chr3 32903607 32903760 -185133398 + L1M4 LINE L1 5352 5512 -672 1742 163 3 20 chr3 32906657 32906963 -185130195 - AluJo SINE Alu -11 301 1 800 285 131 33 chr3 32907207 32907553 -185129605 + Charlie8 DNA MER1_type 45 447 -1970 2021 113 0 42 chr3 32907553 32907862 -185129296 - AluSq SINE Alu -17 296 1 800 285 131 33 chr3 32907862 32907967 -185129191 + Charlie8 DNA MER1_type 447 540 -1877 291 54 0 0 chr3 32907968 32908005 -185129153 + (TC)n Simple_repeat Simple_repeat 1 37 0 1324 133 48 9 chr3 32908778 32908860 -185128298 + MER20 DNA MER1_type 1 78 -141 387 0 0 0 chr3 32908860 32908903 -185128255 + (TG)n Simple_repeat Simple_repeat 2 44 0 1324 133 48 9 chr3 32908903 32909030 -185128128 + MER20 DNA MER1_type 78 218 -1 284 210 12 0 chr3 32910563 32910644 -185126514 + GA-rich Low_complexity Low_complexity 1 82 0 336 24 0 0 chr3 32910750 32910791 -185126367 + (CA)n Simple_repeat Simple_repeat 2 42 0 222 91 0 0 chr3 32910950 32910983 -185126175 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 201 343 30 30 chr3 32916052 32916151 -185121007 - L2 LINE L2 -3 3269 3171 180 0 0 0 chr3 32917622 32917642 -185119516 + (TA)n Simple_repeat Simple_repeat 2 21 0 329 330 8 25 chr3 32917644 32917762 -185119396 - MER5B DNA MER1_type -61 117 2 1060 284 56 62 chr3 32918213 32918678 -185118480 + MLT1J LTR MaLR 6 467 -44 396 218 79 0 chr3 32918678 32918779 -185118379 + MIR SINE MIR 131 239 -23 186 53 105 0 chr3 32918786 32918843 -185118315 + (TA)n Simple_repeat Simple_repeat 2 64 0 1564 294 134 24 chr3 32918845 32918892 -185118266 + L2 LINE L2 2128 2168 -1104 1109 206 53 0 chr3 32918892 32919101 -185118057 + MER58A DNA MER1_type 5 224 0 1564 294 134 24 chr3 32919101 32919887 -185117271 + L2 LINE L2 2168 3053 -219 295 277 142 27 chr3 32920730 32920878 -185116280 - MIR3 SINE MIR -3 205 41 254 209 45 30 chr3 32921273 32921340 -185115818 - MER103 DNA DNA -3 163 96 946 145 111 12 chr3 32922315 32922487 -185114671 + MER5A DNA MER1_type 1 189 0 220 302 16 0 chr3 32923215 32923278 -185113880 - MIR SINE MIR -32 230 167 25 97 0 0 chr3 32923303 32923334 -185113824 + AT_rich Low_complexity Low_complexity 1 31 0 626 210 9 101 chr3 32924082 32924138 -185113020 + L1MC4 LINE L1 7449 7509 -533 817 212 20 7 chr3 32924138 32924289 -185112869 + FRAM SINE Alu 1 153 -13 626 210 9 101 chr3 32924289 32924451 -185112707 + L1MC4 LINE L1 7509 7647 -395 * 964 155 20 50 chr3 32924420 32924620 -185112538 + L1MA7 LINE L1 5851 6044 -247 706 165 76 0 chr3 32924623 32924781 -185112377 + L1MA9 LINE L1 6137 6306 -6 244 255 20 61 chr3 32924799 32924897 -185112261 + L1MC4a LINE L1 7532 7625 -183 1250 187 53 62 chr3 32925012 32925349 -185111809 + L1MC4 LINE L1 7708 8041 -1 204 309 0 0 chr3 32927124 32927179 -185109979 - MIR SINE MIR -149 113 59 2428 53 0 0 chr3 32927698 32928015 -185109143 + AluY SINE Alu 1 317 0 534 267 184 9 chr3 32928390 32928607 -185108551 - MIR SINE MIR 0 262 8 186 316 0 0 chr3 32929051 32929108 -185108050 - MIR SINE MIR -15 247 191 2312 92 0 19 chr3 32929114 32929431 -185107727 - AluSx SINE Alu -1 311 1 26 0 0 0 chr3 32929438 32929464 -185107694 + AT_rich Low_complexity Low_complexity 1 26 0 228 330 55 0 chr3 32929480 32929571 -185107587 - MIR SINE MIR -74 188 93 404 271 53 26 chr3 32929947 32930118 -185107040 - L1MC/D LINE L1 -332 5789 5621 770 244 123 36 chr3 32930918 32931250 -185105908 + L1ME4a LINE L1 5758 6118 -3 494 203 87 14 chr3 32931932 32932070 -185105088 - MER5A DNA MER1_type -41 148 1 2371 103 3 0 chr3 32932421 32932723 -185104435 + AluSx SINE Alu 1 303 -9 518 246 16 0 chr3 32932996 32933118 -185104040 - MER5C DNA MER1_type -200 124 1 193 333 17 0 chr3 32933321 32933381 -185103777 + L2 LINE L2 3253 3313 0 22 0 0 0 chr3 32933789 32933811 -185103347 + AT_rich Low_complexity Low_complexity 1 22 0 258 262 79 35 chr3 32934008 32934195 -185102963 - MIR SINE MIR 0 262 7 205 182 0 0 chr3 32934498 32934531 -185102627 + (CA)n Simple_repeat Simple_repeat 1 33 0 234 0 0 0 chr3 32934612 32934638 -185102520 + (TA)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr3 32936811 32936843 -185100315 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 32937105 32937133 -185100025 + AT_rich Low_complexity Low_complexity 1 28 0 354 293 127 6 chr3 32939014 32939171 -185097987 - MER5B DNA MER1_type 0 178 3 4523 82 8 7 chr3 32939446 32940033 -185097125 + L1PB1 LINE L1 5564 6151 0 226 229 0 21 chr3 32940949 32940997 -185096161 - L2 LINE L2 -16 3297 3251 787 303 138 10 chr3 32941238 32941820 -185095338 + L2 LINE L2 2626 3300 -13 241 308 221 0 chr3 32941844 32941948 -185095210 - MIR SINE MIR -109 153 27 207 0 0 0 chr3 32942092 32942115 -185095043 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 336 246 164 0 chr3 32942148 32942258 -185094900 + MIR SINE MIR 132 259 -3 420 274 94 0 chr3 32943070 32943187 -185093971 + MIR SINE MIR 2 129 -133 237 333 12 0 chr3 32944107 32944191 -185092967 + MIR SINE MIR 160 244 -18 21 0 0 0 chr3 32944198 32944219 -185092939 + GC_rich Low_complexity Low_complexity 1 21 0 534 233 192 0 chr3 32947133 32947279 -185089879 + MER5A DNA MER1_type 9 182 -7 828 245 90 10 chr3 32947629 32947829 -185089329 - MIR SINE MIR -3 259 44 204 276 112 71 chr3 32947853 32948023 -185089135 - MIR3 SINE MIR -11 197 21 459 258 126 6 chr3 32948420 32948587 -185088571 - MIR SINE MIR -9 253 67 246 311 22 22 chr3 32948612 32948702 -185088456 - MIR SINE MIR -67 141 52 1761 143 39 18 chr3 32948883 32949169 -185087989 + AluJb SINE Alu 1 292 -20 41761 55 8 33 chr3 32949274 32955211 -185081947 + L1P2 LINE L1 2 5774 -380 7669 43 24 0 chr3 32955328 32956988 -185080170 + L1PA5 LINE L1 4465 6150 -4 1064 168 10 10 chr3 32957576 32957772 -185079386 + MER20 DNA MER1_type 24 219 0 2162 118 10 3 chr3 32958074 32958371 -185078787 + AluSq SINE Alu 1 299 -14 282 287 36 90 chr3 32959052 32959139 -185078019 - MIR3 SINE MIR 0 208 133 2292 87 12 43 chr3 32959139 32959274 -185077884 + AluSx SINE Alu 1 139 -173 2257 112 0 3 chr3 32959274 32959579 -185077579 + AluSg SINE Alu 1 304 -6 2292 87 12 43 chr3 32959579 32959765 -185077393 + AluSx SINE Alu 139 312 0 282 287 36 90 chr3 32959765 32959844 -185077314 - MIR3 SINE MIR -75 133 51 488 264 84 53 chr3 32961125 32961352 -185075806 - MIR SINE MIR -12 250 17 302 279 0 0 chr3 32962367 32962435 -185074723 + L2 LINE L2 3205 3272 0 * 509 273 125 23 chr3 32962384 32962600 -185074558 - MIR SINE MIR -21 241 4 1254 253 87 35 chr3 32962807 32963211 -185073947 + MLT1J2 LTR MaLR 24 448 -2 362 283 10 0 chr3 32963364 32963463 -185073695 + MIR3 SINE MIR 101 200 -8 2248 69 21 10 chr3 32963486 32963775 -185073383 + AluY SINE Alu 1 292 -19 53 30 0 0 chr3 32964217 32964284 -185072874 + AT_rich Low_complexity Low_complexity 1 67 0 2407 84 0 7 chr3 32965141 32965450 -185071708 + AluY SINE Alu 1 307 -4 183 222 0 0 chr3 32965474 32965519 -185071639 + T-rich Low_complexity Low_complexity 1 45 0 202 191 0 48 chr3 32965750 32965792 -185071366 - L2 LINE L2 -11 3302 3263 188 281 94 0 chr3 32965829 32965893 -185071265 - MIR SINE MIR -36 226 157 277 259 0 0 chr3 32965905 32965963 -185071195 - MER5B DNA MER1_type -115 63 6 32 26 0 0 chr3 32966031 32966070 -185071088 + AT_rich Low_complexity Low_complexity 1 39 0 1518 140 24 113 chr3 32966144 32966472 -185070686 + AluJb SINE Alu 4 302 -10 353 137 0 0 chr3 32966886 32966937 -185070221 - MER5A DNA MER1_type 0 189 139 181 196 0 71 chr3 32966996 32967052 -185070106 + MER5A DNA MER1_type 136 187 -2 639 244 29 29 chr3 32967059 32967231 -185069927 + MER5B DNA MER1_type 7 178 0 626 188 24 79 chr3 32967238 32967366 -185069792 - MER5B DNA MER1_type -14 164 45 1927 155 0 0 chr3 32967366 32967657 -185069501 + AluJb SINE Alu 1 291 -21 626 188 24 79 chr3 32967657 32967693 -185069465 - MER5B DNA MER1_type -133 45 9 210 233 17 17 chr3 32968057 32968117 -185069041 + MIR SINE MIR 81 140 -68 242 304 0 0 chr3 32968640 32968719 -185068439 + (ATGGTG)n Simple_repeat Simple_repeat 5 83 0 551 236 16 47 chr3 32970657 32970848 -185066310 + L1MC4 LINE L1 7858 8042 0 340 256 50 89 chr3 32971214 32971573 -185065585 + L1ME4a LINE L1 5531 5875 -246 293 347 10 0 chr3 32971942 32972040 -185065118 - MIR3 SINE MIR -17 191 93 411 283 19 8 chr3 32972134 32972315 -185064843 + L1M4 LINE L1 5240 5420 -742 925 209 65 23 chr3 32973913 32974128 -185063030 + MER58A DNA MER1_type 1 224 0 517 337 32 4 chr3 32975054 32975306 -185061852 + Charlie8 DNA MER1_type 3 261 -2156 968 161 17 11 chr3 32975646 32975820 -185061338 + AluJb SINE Alu 138 312 0 21 0 0 0 chr3 32976374 32976395 -185060763 + AT_rich Low_complexity Low_complexity 1 21 0 433 270 224 0 chr3 32976502 32976654 -185060504 + MER5A DNA MER1_type 4 189 0 252 298 31 78 chr3 32976983 32977174 -185059984 + MIR SINE MIR 7 188 -74 423 345 57 23 chr3 32977370 32977547 -185059611 + L2 LINE L2 3090 3272 0 412 139 0 14 chr3 32978273 32978345 -185058813 + MLT1K LTR MaLR 516 586 -2 251 301 197 5 chr3 32979795 32980008 -185057150 - L2 LINE L2 -573 2741 2488 200 260 68 41 chr3 32980015 32980088 -185057070 - L2 LINE L2 -47 3225 3151 432 295 240 18 chr3 32980384 32980498 -185056660 + L3 LINE CR1 901 988 -589 719 181 0 9 chr3 32980498 32980774 -185056384 + FLAM_A SINE Alu 1 275 0 432 295 240 18 chr3 32980774 32980985 -185056173 + L3 LINE CR1 988 1302 -275 284 363 44 39 chr3 32981968 32982150 -185055008 - L2 LINE L2 -402 2912 2730 386 127 127 0 chr3 32982248 32982319 -185054839 + MADE1 DNA Mariner 1 80 0 244 260 192 41 chr3 32983416 32983562 -185053596 + MIR SINE MIR 39 206 -56 222 241 0 37 chr3 32984678 32984732 -185052426 + CT-rich Low_complexity Low_complexity 3 54 0 222 37 0 0 chr3 32985409 32985436 -185051722 + (TG)n Simple_repeat Simple_repeat 1 27 0 2063 153 0 0 chr3 32986098 32986398 -185050760 - AluSx SINE Alu -12 300 1 463 167 0 0 chr3 32986656 32986728 -185050430 - FLAM SINE Alu -29 114 43 631 204 8 8 chr3 32986991 32987123 -185050035 - MER119 DNA MER1_type 0 583 452 408 300 67 0 chr3 32987126 32987246 -185049912 - MER119 DNA MER1_type -455 128 1 829 165 94 0 chr3 32987829 32987999 -185049159 - MER5A DNA MER1_type -1 188 3 553 211 186 0 chr3 32988889 32989045 -185048113 + MER5A DNA MER1_type 5 189 0 197 282 103 0 chr3 32989287 32989365 -185047793 - L3b LINE CR1 -396 1187 1102 189 271 51 76 chr3 32989707 32989825 -185047333 + L2 LINE L2 3154 3268 -4 425 196 98 127 chr3 32990185 32990358 -185046800 + MER5B DNA MER1_type 10 177 -1 669 286 162 53 chr3 32990384 32991020 -185046138 + L2 LINE L2 2615 3308 -5 738 212 8 86 chr3 32991188 32991433 -185045725 + L1MB7 LINE L1 5949 6174 -10 238 266 86 55 chr3 32992361 32992489 -185044669 - MIR SINE MIR -76 132 1 2283 93 0 0 chr3 32992787 32993067 -185044091 + AluSx SINE Alu 1 280 -32 261 57 0 0 chr3 32993067 32993102 -185044056 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 548 225 0 0 chr3 32993242 32993353 -185043805 + MIR SINE MIR 152 262 0 331 281 21 115 chr3 32994455 32994690 -185042468 - MIR SINE MIR 0 262 50 378 277 164 6 chr3 32994763 32994922 -185042236 - MIR SINE MIR -56 206 23 373 235 223 6 chr3 32995640 32995806 -185041352 + LTR50 LTR ERVL 2 203 -592 477 299 117 6 chr3 32995860 32996188 -185040970 + LTR50 LTR ERVL 345 795 0 245 157 0 20 chr3 32997020 32997071 -185040087 + MADE1 DNA Mariner 1 50 -30 362 111 0 0 chr3 32997102 32997156 -185040002 + MADE1 DNA Mariner 26 79 -1 1822 181 0 20 chr3 32997572 32997876 -185039282 + AluJo SINE Alu 2 299 -13 851 316 103 58 chr3 32998192 32999303 -185037855 + L1MC4a LINE L1 2816 3975 -2171 299 304 42 6 chr3 32999330 32999498 -185037660 + L1MC4a LINE L1 4674 4847 -1299 486 230 28 51 chr3 32999804 33000021 -185037137 + L1MC4a LINE L1 5736 5947 -1861 242 56 28 0 chr3 33000185 33000221 -185036937 + (CAATA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr3 33000331 33000352 -185036806 + AT_rich Low_complexity Low_complexity 1 21 0 459 209 147 31 chr3 33000480 33000643 -185036515 - L2 LINE L2 0 3313 3132 543 246 56 26 chr3 33000739 33000934 -185036224 - Charlie8 DNA MER1_type -2180 237 37 283 315 64 46 chr3 33001181 33001238 -185035920 + MARNA DNA Mariner 286 340 -246 2224 54 15 97 chr3 33001238 33001569 -185035589 + AluY SINE Alu 1 304 -7 283 315 64 46 chr3 33001569 33001730 -185035428 + MARNA DNA Mariner 340 508 -78 238 357 0 0 chr3 33002420 33002490 -185034668 - L2 LINE L2 -15 3257 3188 195 68 23 45 chr3 33002508 33002552 -185034606 + (CAATA)n Simple_repeat Simple_repeat 3 45 0 438 328 90 17 chr3 33002713 33003079 -185034079 - L2 LINE L2 -222 3050 2655 1022 301 75 72 chr3 33003081 33004125 -185033033 - L2 LINE L2 -1084 2230 1184 443 272 76 38 chr3 33004156 33004314 -185032844 + MIR3 SINE MIR 35 198 -10 27 49 0 0 chr3 33004376 33004417 -185032741 + AT_rich Low_complexity Low_complexity 1 41 0 833 212 45 0 chr3 33004693 33004872 -185032286 - MER58A DNA MER1_type 0 224 38 442 273 52 38 chr3 33005883 33006059 -185031099 - MIR SINE MIR -58 150 3 450 237 160 30 chr3 33006064 33006233 -185030925 - MIR3 SINE MIR -14 194 4 207 0 0 0 chr3 33006774 33006797 -185030361 + (T)n Simple_repeat Simple_repeat 1 23 0 1383 166 59 7 chr3 33007041 33007312 -185029846 - L1MB8 LINE L1 -9 6169 5885 3267 252 116 85 chr3 33007708 33008374 -185028784 + L2 LINE L2 1165 1808 -1505 2433 78 7 7 chr3 33008374 33008682 -185028476 + AluSc SINE Alu 1 308 -1 3267 252 116 85 chr3 33008682 33010095 -185027063 + L2 LINE L2 1808 3305 -8 630 321 72 9 chr3 33010405 33010626 -185026532 - MIR SINE MIR -27 235 1 317 304 8 40 chr3 33010733 33010858 -185026300 + L2 LINE L2 3189 3309 -4 445 284 226 0 chr3 33011189 33011397 -185025761 + L2 LINE L2 2705 2959 -355 308 310 50 0 chr3 33011401 33011501 -185025657 - MIR SINE MIR -62 146 42 21 36 0 0 chr3 33012622 33012650 -185024508 + AT_rich Low_complexity Low_complexity 1 28 0 261 258 45 0 chr3 33012811 33012900 -185024258 + L1ME LINE L1 5666 5758 -363 187 133 44 0 chr3 33014070 33014115 -185023043 + GA-rich Low_complexity Low_complexity 2 48 0 1756 243 153 31 chr3 33014432 33014606 -185022552 + HAL1b LINE L1 127 278 -1070 2884 136 15 2 chr3 33014606 33015085 -185022073 + MER31A LTR ERV1 1 485 0 1756 243 153 31 chr3 33015085 33015972 -185021186 + HAL1b LINE L1 278 1318 -30 25 65 0 0 chr3 33015991 33016037 -185021121 + AT_rich Low_complexity Low_complexity 1 46 0 405 0 0 0 chr3 33016432 33016477 -185020681 + (CA)n Simple_repeat Simple_repeat 1 45 0 277 204 0 19 chr3 33016484 33016538 -185020620 - AluJ/FRAM SINE Alu -31 271 219 363 136 0 0 chr3 33016539 33016598 -185020560 + (CA)n Simple_repeat Simple_repeat 1 59 0 1669 167 0 39 chr3 33016609 33016891 -185020267 - AluJo SINE Alu -41 271 1 334 360 80 0 chr3 33017846 33017996 -185019162 + MIR3 SINE MIR 30 191 -17 197 0 0 67 chr3 33018935 33018965 -185018193 + (TTTAA)n Simple_repeat Simple_repeat 5 32 0 1629 198 3 13 chr3 33019218 33019556 -185017602 + AluJo SINE Alu 3 312 0 219 36 0 0 chr3 33020285 33020313 -185016845 + (CA)n Simple_repeat Simple_repeat 2 29 0 410 215 66 66 chr3 33020390 33020511 -185016647 - L2 LINE L2 -1 3312 3192 867 230 60 57 chr3 33020696 33021027 -185016131 + MER46C DNA MER2_type 7 338 0 355 57 0 19 chr3 33021354 33021407 -185015751 + MER113 DNA MER1_type? 142 193 -328 231 200 15 31 chr3 33021702 33021767 -185015391 + CT-rich Low_complexity Low_complexity 2 65 0 22 35 0 0 chr3 33022396 33022425 -185014733 + AT_rich Low_complexity Low_complexity 1 29 0 197 338 44 0 chr3 33022496 33022564 -185014594 + MIR3 SINE MIR 115 185 -23 292 299 21 70 chr3 33022908 33023095 -185014063 - MER5B DNA MER1_type 0 178 1 523 336 57 16 chr3 33023536 33023783 -185013375 + MIR SINE MIR 6 262 0 1072 169 12 0 chr3 33024352 33024524 -185012634 + MER20 DNA MER1_type 31 204 -15 987 210 16 0 chr3 33024531 33024717 -185012441 - MER5A DNA MER1_type 0 189 1 230 344 199 23 chr3 33025368 33025624 -185011534 + L3b LINE CR1 1254 1554 -29 202 374 86 22 chr3 33025822 33025961 -185011197 + L2 LINE L2 3121 3268 -4 1673 206 3 0 chr3 33025993 33026299 -185010859 - AluJo SINE Alu -5 307 1 1361 65 0 6 chr3 33026538 33026708 -185010450 - AluY SINE Alu -12 299 131 272 258 43 62 chr3 33026812 33027068 -185010090 + L1M4 LINE L1 3053 3303 -2843 21 0 0 0 chr3 33027106 33027127 -185010031 + AT_rich Low_complexity Low_complexity 1 21 0 1248 271 91 35 chr3 33027134 33027781 -185009377 + L1M4 LINE L1 3289 3971 -2175 2255 197 14 7 chr3 33027800 33028226 -185008932 - MER88 LTR ERVL -35 429 1 251 295 70 39 chr3 33028447 33028576 -185008582 + L2 LINE L2 2932 3064 -208 1004 190 27 0 chr3 33028948 33029132 -185008026 + MER5A DNA MER1_type 1 189 0 2747 10 0 7 chr3 33029171 33029476 -185007682 + AluYb8 SINE Alu 1 303 -15 182 260 14 0 chr3 33030416 33030489 -185006669 + GA-rich Low_complexity Low_complexity 2 75 0 220 297 0 16 chr3 33030753 33030817 -185006341 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 197 65 32 0 chr3 33030821 33030852 -185006306 + (TG)n Simple_repeat Simple_repeat 2 33 0 379 265 31 60 chr3 33031342 33031563 -185005595 + MLT1J LTR MaLR 235 475 -36 303 285 73 33 chr3 33031672 33031823 -185005335 + MIR SINE MIR 20 176 -86 2152 55 3 93 chr3 33031922 33032276 -185004882 + AluY SINE Alu 1 326 0 206 171 24 0 chr3 33032465 33032506 -185004652 + GA-rich Low_complexity Low_complexity 3 44 0 194 179 77 0 chr3 33033810 33033849 -185003309 + MIR SINE MIR 111 152 -56 2121 52 0 4 chr3 33034733 33034983 -185002175 - AluY SINE Alu -13 298 50 22 0 0 0 chr3 33036189 33036211 -185000947 + AT_rich Low_complexity Low_complexity 1 22 0 732 310 22 4 chr3 33037286 33037518 -184999640 - MIR SINE MIR -9 253 18 498 129 0 0 chr3 33038325 33038410 -184998748 + (TCC)n Simple_repeat Simple_repeat 3 87 0 203 0 0 36 chr3 33038412 33038440 -184998718 + (TC)n Simple_repeat Simple_repeat 2 28 0 560 322 98 13 chr3 33038575 33038984 -184998174 - L1MC/D LINE L1 -485 5636 5317 183 80 0 0 chr3 33039154 33039179 -184997979 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 342 174 23 12 chr3 33039190 33039243 -184997915 - L1MB1 LINE L1 -4 6185 6129 1918 150 7 13 chr3 33039243 33039543 -184997615 - AluSx SINE Alu -12 300 3 342 174 23 12 chr3 33039543 33039575 -184997583 - L1MB1 LINE L1 -60 6129 6099 1159 252 79 87 chr3 33039575 33040094 -184997064 + MLT1H LTR MaLR 13 527 -22 1113 262 159 11 chr3 33040244 33040698 -184996460 - LTR33A LTR ERVL 0 523 3 217 354 73 48 chr3 33040831 33041147 -184996011 - L2 LINE L2 -338 2976 2653 477 286 79 11 chr3 33041610 33041788 -184995370 - MER117 DNA MER1_type -7 190 1 326 79 53 0 chr3 33041908 33041984 -184995174 + (TA)n Simple_repeat Simple_repeat 2 81 0 515 197 22 164 chr3 33042630 33042904 -184994254 + MER112 DNA MER1_type 19 253 -7 476 186 62 87 chr3 33043522 33043683 -184993475 + MIR SINE MIR 106 262 0 472 230 36 7 chr3 33043810 33043949 -184993209 + L1MA10 LINE L1 6181 6323 -11 25 31 0 0 chr3 33043961 33043993 -184993165 + AT_rich Low_complexity Low_complexity 1 32 0 437 293 106 34 chr3 33043993 33044504 -184992654 + L1ME3A LINE L1 1687 2260 -4136 1781 251 66 22 chr3 33044642 33045367 -184991791 + L1ME3A LINE L1 2403 3159 -3056 2529 253 74 39 chr3 33045480 33047391 -184989767 + L1ME3A LINE L1 4251 6232 -7 629 219 101 25 chr3 33047785 33048023 -184989135 + MER112 DNA MER1_type 1 256 0 197 125 25 25 chr3 33048035 33048075 -184989083 + L2 LINE L2 3269 3308 -5 494 259 51 28 chr3 33049239 33049455 -184987703 + L1ME4a LINE L1 5859 6079 -42 829 72 0 0 chr3 33050555 33050666 -184986492 - L1P3 LINE L1 -336 5818 5708 2168 91 10 0 chr3 33050666 33050963 -184986195 + L1PA13 LINE L1 5860 6160 -3 232 206 0 109 chr3 33051433 33051525 -184985633 + L1MC4a LINE L1 6964 7045 -763 * 2724 205 28 23 chr3 33051522 33052166 -184984992 + L1MC4 LINE L1 7216 7862 -180 2195 199 30 7 chr3 33052449 33052856 -184984302 - MLT-int LTR MaLR -36 1699 1284 240 181 36 72 chr3 33052918 33053001 -184984157 - MLT-int LTR MaLR -980 755 676 227 279 0 44 chr3 33053060 33053128 -184984030 - MLT1-int LTR MaLR -488 883 819 804 137 123 0 chr3 33053150 33053296 -184983862 - MLT1-int LTR MaLR -1567 168 5 355 280 91 42 chr3 33053773 33053916 -184983242 - MIR3 SINE MIR -15 193 44 243 79 0 0 chr3 33053920 33053958 -184983200 + (A)n Simple_repeat Simple_repeat 1 38 0 242 312 18 0 chr3 33054270 33054379 -184982779 - L1MC/D LINE L1 -2000 5808 5698 803 266 39 13 chr3 33054458 33054691 -184982467 + L2 LINE L2 3075 3313 0 469 373 78 23 chr3 33054696 33055264 -184981894 - L1MC/D LINE L1 -815 5331 4733 2566 226 11 16 chr3 33055592 33056141 -184981017 - MLT1H1 LTR MaLR 0 555 10 326 281 135 17 chr3 33056707 33056885 -184980273 - MIR SINE MIR -1 261 63 474 214 0 0 chr3 33056904 33056993 -184980165 + MER5A DNA MER1_type 10 98 -91 184 233 0 0 chr3 33057063 33057106 -184980052 - MER5B DNA MER1_type -3 175 133 610 219 22 51 chr3 33057141 33057278 -184979880 - MER5B DNA MER1_type -45 133 1 505 169 0 22 chr3 33057467 33057556 -184979602 - MER5B DNA MER1_type -90 88 2 547 259 116 11 chr3 33057556 33057745 -184979413 - Charlie8 DNA MER1_type -2185 232 24 332 237 11 32 chr3 33058593 33058686 -184978472 - MIR SINE MIR 0 262 172 * 1189 246 126 53 chr3 33058670 33059276 -184977882 + L2 LINE L2 2667 3313 0 435 250 62 14 chr3 33059274 33059418 -184977740 - MIR SINE MIR -65 197 47 * 195 235 0 0 chr3 33060942 33060976 -184976182 - L2 LINE L2 -17 3255 3222 582 312 74 2 chr3 33061028 33061218 -184975940 - MIR SINE MIR -55 207 7 2203 105 0 14 chr3 33063194 33063490 -184973668 - AluSc SINE Alu -12 297 6 188 324 176 19 chr3 33063631 33063739 -184973419 - L2 LINE L2 -4 3309 3185 23 0 0 0 chr3 33065432 33065455 -184971703 + AT_rich Low_complexity Low_complexity 1 23 0 617 105 0 0 chr3 33065455 33065541 -184971617 - FLAM_A SINE Alu -20 122 37 229 325 159 12 chr3 33065659 33065822 -184971336 - MIR SINE MIR -27 235 49 2491 219 36 16 chr3 33066069 33066709 -184970449 - MER97c DNA MER1_type? -437 653 1 538 331 22 6 chr3 33067365 33067546 -184969612 - MIR SINE MIR -76 186 3 21 57 0 0 chr3 33067850 33067885 -184969273 + AT_rich Low_complexity Low_complexity 1 35 0 572 274 8 0 chr3 33068622 33068746 -184968412 + MER63A DNA MER1_type 51 175 -35 270 314 20 29 chr3 33069107 33069209 -184967949 - MIR3 SINE MIR -54 154 54 2752 119 16 5 chr3 33070088 33070517 -184966641 + MER57B LTR ERV1 1 434 0 41 58 0 0 chr3 33071686 33071755 -184965403 + AT_rich Low_complexity Low_complexity 1 69 0 191 98 0 103 chr3 33071758 33071942 -184965216 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 25 31 0 0 chr3 33071952 33071984 -184965174 + AT_rich Low_complexity Low_complexity 1 32 0 198 311 54 0 chr3 33072110 33072184 -184964974 - MIR SINE MIR -82 180 103 216 0 0 0 chr3 33072200 33072224 -184964934 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 619 325 83 20 chr3 33072587 33072935 -184964223 + L1MEc LINE L1 92 461 -5935 324 273 196 59 chr3 33073308 33073353 -184963805 + MLT1K LTR MaLR 2 39 -549 1496 167 4 30 chr3 33073353 33073616 -184963542 - AluJb SINE Alu -16 296 41 324 273 196 59 chr3 33073616 33073907 -184963251 + MLT1K LTR MaLR 39 384 -204 245 260 181 8 chr3 33074136 33074263 -184962895 + MIR3 SINE MIR 57 205 -3 337 265 10 20 chr3 33075372 33075474 -184961684 - MIR SINE MIR -34 228 128 207 208 21 0 chr3 33075532 33075580 -184961578 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 21 36 0 0 chr3 33075652 33075680 -184961478 + AT_rich Low_complexity Low_complexity 1 28 0 258 284 34 0 chr3 33076490 33076578 -184960580 + MER94 DNA DNA 41 131 -3 283 362 83 24 chr3 33076608 33076862 -184960296 + L2 LINE L2 2656 2924 -390 298 242 89 24 chr3 33077105 33077229 -184959929 - MIR SINE MIR -50 212 81 2397 97 0 0 chr3 33077246 33077544 -184959614 + AluSc SINE Alu 1 298 -11 188 273 41 103 chr3 33078847 33079041 -184958117 + L2 LINE L2 2494 2675 -639 * 340 405 136 14 chr3 33079012 33079358 -184957800 + L2 LINE L2 2847 3234 -38 243 0 0 0 chr3 33079362 33079389 -184957769 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 212 100 25 0 chr3 33079433 33079473 -184957685 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 40 0 0 0 chr3 33080401 33080441 -184956717 + AT_rich Low_complexity Low_complexity 1 40 0 303 329 68 4 chr3 33080799 33081036 -184956122 - L1ME4a LINE L1 -237 5884 5633 598 64 11 43 chr3 33081461 33081555 -184955603 + L1PA11 LINE L1 6084 6174 0 369 298 48 0 chr3 33082343 33082467 -184954691 + L2 LINE L2 2929 3058 -255 318 250 60 69 chr3 33082591 33082807 -184954351 + MER112 DNA MER1_type 33 246 -14 204 281 260 0 chr3 33082861 33082957 -184954201 + L2 LINE L2 3193 3313 0 1075 191 5 0 chr3 33083822 33084010 -184953148 - MER5A DNA MER1_type 0 189 1 1135 202 9 5 chr3 33084018 33084236 -184952922 + MER20 DNA MER1_type 1 219 0 765 311 79 65 chr3 33084905 33085759 -184951399 + L2 LINE L2 2358 3245 -27 1229 292 83 12 chr3 33086031 33086510 -184950648 - L2 LINE L2 -408 2906 2394 186 252 217 17 chr3 33086512 33086627 -184950531 + L2 LINE L2 2991 3128 -144 335 315 109 11 chr3 33087439 33087640 -184949518 - MIR SINE MIR -40 222 7 181 330 117 19 chr3 33087681 33087784 -184949374 - L3 LINE CR1 -160 1417 1305 416 297 68 40 chr3 33087961 33088183 -184948975 - L3 LINE CR1 -274 1303 1076 21 0 0 0 chr3 33089680 33089701 -184947457 + AT_rich Low_complexity Low_complexity 1 21 0 193 244 12 12 chr3 33089709 33089791 -184947367 + CT-rich Low_complexity Low_complexity 3 84 0 240 318 173 17 chr3 33090254 33090433 -184946725 + L2 LINE L2 2993 3199 -73 370 258 167 0 chr3 33090562 33090694 -184946464 + MIR SINE MIR 84 237 -25 225 83 0 0 chr3 33090978 33091014 -184946144 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1465 196 0 8 chr3 33091140 33091400 -184945758 + AluJo SINE Alu 1 258 -54 195 42 0 0 chr3 33091425 33091449 -184945709 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 435 287 103 35 chr3 33091877 33092051 -184945107 + L2 LINE L2 3120 3305 -8 2201 232 76 16 chr3 33092399 33093071 -184944087 + L1ME3 LINE L1 5421 6132 -30 255 224 78 9 chr3 33094760 33094876 -184942282 - MER113 DNA MER1_type? -307 214 91 1154 171 68 62 chr3 33095095 33095417 -184941741 + MER33 DNA MER1_type 1 324 0 616 232 161 0 chr3 33096810 33096965 -184940193 - MER5A DNA MER1_type -6 183 4 2138 128 0 7 chr3 33098770 33099060 -184938098 + AluSx SINE Alu 1 288 -24 2286 119 0 0 chr3 33099598 33099901 -184937257 - AluSx SINE Alu -9 303 1 192 311 16 33 chr3 33099937 33099998 -184937160 + L2 LINE L2 3201 3260 -12 2286 113 0 0 chr3 33100122 33100424 -184936734 - AluSg SINE Alu -4 306 5 827 273 73 55 chr3 33100876 33101220 -184935938 - L2 LINE L2 -4 3309 2960 369 281 201 35 chr3 33101287 33101686 -184935472 + L1ME LINE L1 5255 5600 -521 712 335 46 44 chr3 33101748 33102252 -184934906 + L2 LINE L2 2283 2787 -527 2097 136 0 3 chr3 33102665 33102966 -184934192 - AluSx SINE Alu -12 300 1 463 167 0 0 chr3 33103224 33103296 -184933862 - FLAM SINE Alu -29 114 43 631 204 8 8 chr3 33103559 33103691 -184933467 - MER119 DNA MER1_type 0 583 452 343 244 96 17 chr3 33103694 33103809 -184933349 - MER119 DNA MER1_type -455 128 5 6594 55 30 1 chr3 33104299 33105272 -184931886 + L1P LINE L1 3208 4208 -1938 307 349 94 7 chr3 33106094 33106243 -184930915 + MIR3 SINE MIR 30 191 -17 1482 288 178 31 chr3 33106915 33108219 -184928939 - L2 LINE L2 -8 3305 1817 389 276 92 32 chr3 33108812 33108997 -184928161 + L2 LINE L2 3071 3266 -6 22 35 0 0 chr3 33109242 33109271 -184927887 + AT_rich Low_complexity Low_complexity 1 29 0 1749 100 0 58 chr3 33109882 33110143 -184927015 - AluY SINE Alu -65 246 1 353 267 61 8 chr3 33110447 33110578 -184926580 + Charlie8 DNA MER1_type 37 174 -2243 724 183 120 40 chr3 33160940 33161115 -184876043 + MER5A DNA MER1_type 1 189 0 459 267 148 29 chr3 33161495 33161847 -184875311 - L1M4 LINE L1 -319 5802 5446 471 280 19 55 chr3 33162263 33162429 -184874729 + MIR SINE MIR 14 183 -67 709 269 39 0 chr3 33162435 33162617 -184874541 + MIR SINE MIR 8 196 -66 222 150 0 0 chr3 33162619 33162659 -184874499 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 284 208 26 39 chr3 33164746 33164823 -184872335 - L2 LINE L2 -6 3307 3232 184 170 62 9 chr3 33165766 33165878 -184871280 + (TA)n Simple_repeat Simple_repeat 2 119 0 554 256 249 7 chr3 33165892 33166197 -184870961 + L3 LINE CR1 429 807 -770 851 109 0 47 chr3 33166209 33166337 -184870821 - FLAM_C SINE Alu -19 124 3 216 281 49 0 chr3 33166341 33166423 -184870735 + L3 LINE CR1 796 881 -696 400 282 14 21 chr3 33166889 33167031 -184870127 + L1ME3 LINE L1 4881 5021 -1125 279 0 0 0 chr3 33167787 33167818 -184869340 + (CA)n Simple_repeat Simple_repeat 2 32 0 848 266 84 62 chr3 33167844 33168460 -184868698 + L1ME3 LINE L1 5320 5949 -213 469 333 50 50 chr3 33168961 33169222 -184867936 + L3 LINE CR1 1011 1271 -306 589 247 7 39 chr3 33169593 33169694 -184867464 + MIR SINE MIR 63 159 -103 2389 183 49 10 chr3 33169694 33170180 -184866978 + MLT1D LTR MaLR 1 505 0 589 247 7 39 chr3 33170180 33170232 -184866926 + MIR SINE MIR 159 211 -51 186 103 0 0 chr3 33172990 33173019 -184864139 + (CA)n Simple_repeat Simple_repeat 1 29 0 252 127 45 36 chr3 33173572 33173682 -184863476 + (TA)n Simple_repeat Simple_repeat 1 111 0 2862 132 48 2 chr3 33173685 33174184 -184862974 + L1MA4 LINE L1 5774 6295 -5 27 0 0 0 chr3 33174601 33174628 -184862530 + AT_rich Low_complexity Low_complexity 1 27 0 351 0 0 0 chr3 33175022 33175061 -184862097 + (TG)n Simple_repeat Simple_repeat 1 39 0 988 229 76 89 chr3 33175401 33175864 -184861294 - LTR16A1 LTR ERVL 0 457 1 970 341 152 34 chr3 33176128 33176916 -184860242 - L3 LINE CR1 -104 1473 593 21 0 0 0 chr3 33177045 33177066 -184860092 + AT_rich Low_complexity Low_complexity 1 21 0 1378 265 64 12 chr3 33177370 33177900 -184859258 - MLT1E LTR MaLR -3 590 1 434 238 18 39 chr3 33178749 33178917 -184858241 - MIR SINE MIR 0 262 44 2459 68 7 3 chr3 33179066 33179376 -184857782 + AluSp SINE Alu 1 311 -2 2100 118 7 3 chr3 33179425 33179713 -184857445 + AluSc SINE Alu 2 290 -19 280 313 72 4 chr3 33179960 33180225 -184856933 + L1P LINE L1 3604 3886 -2260 451 387 22 9 chr3 33180254 33180484 -184856674 - MIR SINE MIR -27 235 3 790 310 152 49 chr3 33180517 33181128 -184856030 + L1ME4a LINE L1 3914 4461 -1685 1804 116 76 4 chr3 33181128 33181405 -184855753 - AluSq SINE Alu -14 299 3 790 310 152 49 chr3 33181405 33181809 -184855349 + L1ME4a LINE L1 4461 5033 -1113 27 0 0 0 chr3 33182117 33182144 -184855014 + AT_rich Low_complexity Low_complexity 1 27 0 339 293 68 0 chr3 33182215 33182348 -184854810 + L1ME4a LINE L1 5576 5717 -404 680 238 136 8 chr3 33182381 33182616 -184854542 + L1ME4a LINE L1 5781 6045 -76 811 234 42 5 chr3 33183282 33183474 -184853684 + MLT1D LTR MaLR 2 200 -305 22 0 0 0 chr3 33183619 33183641 -184853517 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 33183710 33183732 -184853426 + AT_rich Low_complexity Low_complexity 1 22 0 263 175 18 0 chr3 33186495 33186552 -184850606 + GA-rich Low_complexity Low_complexity 4 61 0 24 53 0 0 chr3 33187499 33187537 -184849621 + AT_rich Low_complexity Low_complexity 1 38 0 2368 88 0 10 chr3 33187749 33188054 -184849104 - AluSg SINE Alu -8 302 1 1065 209 17 13 chr3 33188650 33188884 -184848274 - MER96B DNA MER1_type? -182 235 1 450 273 62 14 chr3 33189480 33189689 -184847469 + L2 LINE L2 2298 2516 -798 727 282 73 29 chr3 33189711 33189956 -184847202 - MIR SINE MIR -2 260 5 * 808 337 35 37 chr3 33189951 33190408 -184846750 + L2 LINE L2 2520 2975 -339 373 163 146 10 chr3 33190556 33190671 -184846487 + L1MB8 LINE L1 5208 5335 -811 1725 171 28 36 chr3 33190671 33191058 -184846100 + L1MB8 LINE L1 5795 6178 0 194 311 54 81 chr3 33191262 33191410 -184845748 - MIR3 SINE MIR -1 207 64 252 0 0 0 chr3 33191624 33191652 -184845506 + (T)n Simple_repeat Simple_repeat 1 28 0 1782 169 0 20 chr3 33192563 33192865 -184844293 + AluJo SINE Alu 1 296 -16 202 188 0 62 chr3 33193101 33193181 -184843977 + A-rich Low_complexity Low_complexity 1 75 0 481 296 88 22 chr3 33193608 33193834 -184843324 + MER102a DNA MER1_type 74 314 -16 472 215 222 0 chr3 33194465 33194609 -184842549 - MER5A DNA MER1_type 0 189 14 33 25 0 0 chr3 33195441 33195481 -184841677 + AT_rich Low_complexity Low_complexity 1 40 0 6488 60 18 13 chr3 33195481 33196349 -184840809 - L1PA7 LINE L1 -7 6147 5275 678 315 22 9 chr3 33197709 33197941 -184839217 + MIR SINE MIR 28 262 0 506 283 163 0 chr3 33198357 33198615 -184838543 + L1ME4a LINE L1 5740 6039 -82 343 266 35 18 chr3 33198778 33198891 -184838267 + MIR3 SINE MIR 90 204 -4 1540 125 73 62 chr3 33199784 33200073 -184837085 - AluJo SINE Alu -20 292 1 2597 48 7 0 chr3 33200480 33200789 -184836369 + AluY SINE Alu 1 311 0 454 316 24 24 chr3 33200909 33201246 -184835912 - L1MEc LINE L1 -3776 2463 2144 350 308 66 25 chr3 33201555 33201841 -184835317 - HAL1 LINE L1 -744 1763 1466 1919 149 0 3 chr3 33201930 33202219 -184834939 - AluSx SINE Alu -24 288 1 657 234 89 40 chr3 33202364 33202612 -184834546 - HAL1 LINE L1 -2 2505 2246 253 234 31 88 chr3 33202649 33202841 -184834317 - HAL1 LINE L1 -1211 1296 1116 * 633 282 66 12 chr3 33202840 33203081 -184834077 - HAL1 LINE L1 -1749 758 505 14943 131 21 3 chr3 33203082 33205394 -184831764 - Tigger1 DNA MER2_type 0 2418 65 260 172 0 241 chr3 33205394 33205510 -184831648 - Tigger1 DNA MER2_type -2329 89 2 210 356 33 11 chr3 33205561 33205651 -184831507 + L2 LINE L2 2970 3061 -211 275 335 77 11 chr3 33206691 33206867 -184830291 - MIR SINE MIR -29 233 46 760 246 209 5 chr3 33206867 33207078 -184830080 + MIR SINE MIR 3 256 -6 2253 100 0 0 chr3 33207143 33207433 -184829725 - AluSx SINE Alu -22 290 1 378 299 220 4 chr3 33207452 33207693 -184829465 - L3 LINE CR1 -296 1281 989 936 182 6 0 chr3 33207716 33207875 -184829283 + MER5A DNA MER1_type 29 188 -1 710 337 57 12 chr3 33208014 33208346 -184828812 - L3 LINE CR1 -774 803 457 281 284 119 72 chr3 33208545 33208739 -184828419 - MIR SINE MIR -55 207 5 39 38 0 0 chr3 33209400 33209453 -184827705 + AT_rich Low_complexity Low_complexity 1 53 0 520 47 0 0 chr3 33209839 33209903 -184827255 - L1P LINE L1 -748 5424 5361 5597 50 3 30 chr3 33209903 33210635 -184826523 + L1PA7 LINE L1 5436 6151 -3 484 251 80 43 chr3 33210867 33211054 -184826104 - MER117 DNA MER1_type 0 197 4 28 71 0 0 chr3 33211748 33211804 -184825354 + AT_rich Low_complexity Low_complexity 1 56 0 212 186 23 0 chr3 33211979 33212022 -184825136 + (TATG)n Simple_repeat Simple_repeat 3 46 0 209 30 61 0 chr3 33212047 33212080 -184825078 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 325 225 134 82 chr3 33213540 33213606 -184823552 + MER112 DNA MER1_type 17 78 -182 297 0 0 0 chr3 33213606 33213639 -184823519 + (TG)n Simple_repeat Simple_repeat 1 33 0 325 225 134 82 chr3 33213639 33213803 -184823355 + MER112 DNA MER1_type 78 259 -1 531 220 164 19 chr3 33213933 33214092 -184823066 - MER5A DNA MER1_type -1 188 7 21 36 0 0 chr3 33214744 33214772 -184822386 + AT_rich Low_complexity Low_complexity 1 28 0 320 170 160 57 chr3 33214807 33214913 -184822245 + L2 LINE L2 3197 3313 0 226 363 0 0 chr3 33215071 33215151 -184822007 + GA-rich Low_complexity Low_complexity 2 81 0 856 171 4 152 chr3 33215376 33215534 -184821624 + MER20 DNA MER1_type 1 109 -110 2248 63 0 14 chr3 33215534 33215848 -184821310 + AluY SINE Alu 1 310 0 856 171 4 152 chr3 33215848 33215945 -184821213 + MER20 DNA MER1_type 109 219 0 1355 272 87 13 chr3 33216283 33216731 -184820427 + LTR16C LTR ERVL 5 485 -6 267 79 0 0 chr3 33217737 33217775 -184819383 + (T)n Simple_repeat Simple_repeat 1 38 0 188 262 0 0 chr3 33218021 33218063 -184819095 - L2 LINE L2 -88 3225 3184 21 0 0 0 chr3 33218353 33218374 -184818784 + AT_rich Low_complexity Low_complexity 1 21 0 586 338 29 0 chr3 33218749 33218953 -184818205 - MIR SINE MIR -12 250 41 252 0 0 0 chr3 33219001 33219029 -184818129 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 402 100 0 0 chr3 33219031 33219091 -184818067 + (TC)n Simple_repeat Simple_repeat 1 60 0 28 0 0 0 chr3 33219579 33219607 -184817551 + AT_rich Low_complexity Low_complexity 1 28 0 665 224 74 102 chr3 33220293 33220752 -184816406 + MLT1J1 LTR MaLR 1 446 0 1127 164 157 18 chr3 33220851 33221131 -184816027 + MER33 DNA MER1_type 6 324 0 986 196 16 0 chr3 33221156 33221340 -184815818 + MER58A DNA MER1_type 38 224 0 186 71 0 0 chr3 33221476 33221504 -184815654 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 264 351 170 25 chr3 33221944 33222297 -184814861 + L2 LINE L2 2574 2977 -337 190 279 0 0 chr3 33222436 33222479 -184814679 - MIR3 SINE MIR -45 163 121 1133 185 15 10 chr3 33222561 33222766 -184814392 + MER20 DNA MER1_type 1 206 -13 261 57 0 0 chr3 33223853 33223888 -184813270 + (CA)n Simple_repeat Simple_repeat 2 36 0 283 237 214 23 chr3 33223898 33224029 -184813129 - MER103 DNA DNA -7 159 4 21 0 0 0 chr3 33225409 33225430 -184811728 + AT_rich Low_complexity Low_complexity 1 21 0 1981 120 42 0 chr3 33225499 33225782 -184811376 + AluSc SINE Alu 9 303 -6 230 196 89 0 chr3 33226680 33226736 -184810422 + L2 LINE L2 3251 3311 -2 310 281 126 22 chr3 33226971 33227106 -184810052 - L2 LINE L2 0 3272 3124 647 303 8 90 chr3 33228673 33229029 -184808129 - L2 LINE L2 0 3313 2987 465 308 104 102 chr3 33231501 33232107 -184805051 + L1M2 LINE L1 445 1323 -5526 857 112 20 97 chr3 33234213 33234409 -184802749 - MER96B DNA MER1_type? -236 181 1 223 355 0 13 chr3 33234542 33234618 -184802540 - L2 LINE L2 -213 3059 2985 2739 196 69 44 chr3 33234878 33235531 -184801627 - MER45B DNA AcHobo -371 669 1 383 315 82 27 chr3 33235629 33235813 -184801345 - MIR SINE MIR -4 258 65 289 317 118 27 chr3 33236049 33236235 -184800923 + MLT1J2 LTR MaLR 241 443 -7 1344 217 19 5 chr3 33236383 33236811 -184800347 - L1ME3 LINE L1 0 6162 5617 699 256 15 15 chr3 33237776 33237971 -184799187 + MIR SINE MIR 53 247 -15 182 269 15 138 chr3 33238075 33238205 -184798953 - L2 LINE L2 -2 3311 3198 201 346 84 0 chr3 33238595 33238702 -184798456 + MIR3 SINE MIR 79 194 -14 29 28 0 0 chr3 33239001 33239037 -184798121 + AT_rich Low_complexity Low_complexity 1 36 0 212 322 130 55 chr3 33239499 33239645 -184797513 + MIR SINE MIR 100 256 -6 197 250 28 74 chr3 33239920 33240028 -184797130 + MIR SINE MIR 104 206 -56 851 204 72 152 chr3 33240500 33240688 -184796470 + L2 LINE L2 2889 3091 -222 963 202 5 5 chr3 33240688 33240876 -184796282 + MER5A DNA MER1_type 1 188 -1 851 204 72 152 chr3 33240876 33241147 -184796011 + L2 LINE L2 3091 3311 -2 330 26 0 0 chr3 33241714 33241753 -184795405 + (TG)n Simple_repeat Simple_repeat 2 40 0 831 277 138 43 chr3 33241991 33242456 -184794702 - MLT1H LTR MaLR -2 547 39 213 378 90 0 chr3 33242922 33243033 -184794125 - L2 LINE L2 -16 3256 3136 290 82 9 0 chr3 33243046 33243092 -184794066 + Alu SINE Alu 250 289 -11 425 76 15 0 chr3 33243106 33243172 -184793986 + (TA)n Simple_repeat Simple_repeat 2 68 0 245 333 95 9 chr3 33243173 33243278 -184793880 - L2 LINE L2 -186 3127 3014 551 189 39 18 chr3 33243295 33243581 -184793577 + (TA)n Simple_repeat Simple_repeat 1 292 0 235 94 0 0 chr3 33243582 33243614 -184793544 + (CA)n Simple_repeat Simple_repeat 2 33 0 947 156 47 47 chr3 33244302 33244513 -184792645 - MER20 DNA MER1_type -3 216 6 430 235 59 0 chr3 33246456 33246558 -184790600 - L3 LINE CR1 -910 667 560 334 325 43 0 chr3 33246585 33246702 -184790456 - L3 LINE CR1 -1129 448 327 1059 160 16 21 chr3 33247067 33247254 -184789904 + MER5A DNA MER1_type 4 189 0 419 265 125 45 chr3 33247345 33247545 -184789613 - MIR SINE MIR -2 260 45 2637 29 0 13 chr3 33247848 33248163 -184788995 - AluYa5 SINE Alu 0 311 1 579 255 153 0 chr3 33248262 33248419 -184788739 + MER5A DNA MER1_type 9 189 0 221 259 17 17 chr3 33248437 33248495 -184788663 - MIR SINE MIR -76 132 75 686 288 9 40 chr3 33248584 33248810 -184788348 - MIR SINE MIR -15 247 29 2253 105 16 3 chr3 33248953 33249258 -184787900 + AluSx SINE Alu 1 309 -3 306 0 0 0 chr3 33250242 33250276 -184786882 + (CA)n Simple_repeat Simple_repeat 1 34 0 182 365 21 10 chr3 33252276 33252372 -184784786 - MIR3 SINE MIR -7 201 105 662 264 119 57 chr3 33252448 33252902 -184784256 + MLT1J LTR MaLR 19 500 -11 244 267 0 0 chr3 33252915 33252975 -184784183 + L2 LINE L2 3240 3299 -14 300 325 58 34 chr3 33252979 33253185 -184783973 + L2 LINE L2 2448 2658 -656 575 299 0 0 chr3 33253424 33253558 -184783600 + L2 LINE L2 3180 3313 0 233 167 19 0 chr3 33253618 33253672 -184783486 + GA-rich Low_complexity Low_complexity 2 56 0 523 198 83 0 chr3 33253868 33253989 -184783169 + Charlie1 DNA MER1_type 2343 2473 -288 956 217 64 20 chr3 33253989 33254315 -184782843 + MSTD LTR MaLR 2 371 -25 845 152 15 131 chr3 33254324 33254653 -184782505 + Charlie1 DNA MER1_type 2471 2761 0 415 295 110 20 chr3 33254736 33254936 -184782222 + MIR SINE MIR 20 237 -25 425 234 45 0 chr3 33255036 33255147 -184782011 + MER63 DNA MER1_type 1 742 -94 731 200 41 0 chr3 33255565 33255710 -184781448 + MER5A DNA MER1_type 1 151 -38 723 239 93 11 chr3 33255846 33256208 -184780950 + LTR16A1 LTR ERVL 4 456 -1 459 364 31 5 chr3 33256208 33256403 -184780755 + MIR SINE MIR 27 226 -36 352 262 194 30 chr3 33256884 33257147 -184780011 + L2 LINE L2 2994 3299 -14 2039 236 43 7 chr3 33257151 33257735 -184779423 + L1ME3A LINE L1 5511 6115 -55 350 316 123 74 chr3 33257923 33258515 -184778643 - L1M2 LINE L1 -5456 1393 773 225 290 183 0 chr3 33259578 33259671 -184777487 + MIR3 SINE MIR 65 174 -34 661 274 107 31 chr3 33261797 33262114 -184775044 - MLT1J2 LTR MaLR -109 341 1 583 269 91 10 chr3 33262142 33262339 -184774819 - MIR SINE MIR -1 261 49 246 128 0 0 chr3 33263286 33263325 -184773833 + (TA)n Simple_repeat Simple_repeat 1 39 0 911 217 31 61 chr3 33264028 33264355 -184772803 + L1ME3A LINE L1 5854 6170 0 238 257 248 0 chr3 33265040 33265145 -184772013 - L2 LINE L2 -1 3271 3141 261 159 0 0 chr3 33265150 33265213 -184771945 + CT-rich Low_complexity Low_complexity 2 64 0 351 0 0 0 chr3 33265213 33265252 -184771906 + (CA)n Simple_repeat Simple_repeat 2 40 0 256 341 0 41 chr3 33265252 33265375 -184771783 - L2 LINE L2 -27 3286 3169 29 47 0 0 chr3 33265395 33265438 -184771720 + AT_rich Low_complexity Low_complexity 1 43 0 427 215 0 0 chr3 33265451 33265544 -184771614 - L1MEc LINE L1 -3896 2748 2656 1747 217 303 6 chr3 33265558 33266337 -184770821 - L1MC4 LINE L1 -206 7836 6827 1180 257 39 52 chr3 33266427 33267048 -184770110 - L1MEc LINE L1 -4577 2248 1485 662 313 80 9 chr3 33267144 33267483 -184769675 - L1MEc LINE L1 -5935 890 528 264 304 10 20 chr3 33267583 33267685 -184769473 - L2 LINE L2 -151 3162 3062 239 323 57 32 chr3 33267759 33267883 -184769275 - L2 LINE L2 -191 3081 2955 873 194 12 12 chr3 33267919 33268089 -184769069 - AluJb SINE Alu -23 289 120 255 321 45 27 chr3 33268229 33268341 -184768817 - L2 LINE L2 -486 2828 2715 1861 154 10 3 chr3 33268517 33268810 -184768348 + AluJb SINE Alu 2 296 -16 184 135 162 0 chr3 33269188 33269225 -184767933 - L2 LINE L2 -8 3264 3222 1718 145 83 26 chr3 33269633 33269984 -184767174 + THE1C LTR MaLR 3 373 -2 1077 242 56 49 chr3 33270042 33270451 -184766707 + LTR16A1 LTR ERVL 13 424 -33 304 270 81 9 chr3 33270731 33270842 -184766316 - L2 LINE L2 -971 2343 2225 258 287 68 31 chr3 33271036 33271329 -184765829 + L1MC/D LINE L1 4309 4612 -1534 2126 119 7 3 chr3 33271388 33271690 -184765468 + AluSg SINE Alu 1 303 -7 282 261 116 0 chr3 33272166 33272304 -184764854 + L1MC/D LINE L1 5313 5466 -2342 610 336 89 42 chr3 33272483 33273269 -184763889 - L1M4 LINE L1 -1086 5060 4238 720 256 19 0 chr3 33273797 33273957 -184763201 - FRAM SINE Alu -3 163 1 316 324 64 20 chr3 33274021 33274225 -184762933 - L1M4 LINE L1 -2368 3778 3566 252 0 0 0 chr3 33276554 33276582 -184760576 + (T)n Simple_repeat Simple_repeat 1 28 0 342 246 47 76 chr3 33277130 33277301 -184759857 - MIR SINE MIR -12 250 85 261 225 43 32 chr3 33277393 33277485 -184759673 + MLT1J1 LTR MaLR 71 141 -305 953 232 16 5 chr3 33277492 33277682 -184759476 - MER58A DNA MER1_type -9 215 24 1298 183 14 5 chr3 33277693 33277906 -184759252 + MER8 DNA MER2_type 4 218 -21 219 339 0 0 chr3 33278047 33278109 -184759049 + L2 LINE L2 2684 2745 -569 241 276 23 0 chr3 33279073 33279160 -184757998 - L1ME4a LINE L1 -68 6053 5965 302 330 20 0 chr3 33279363 33279463 -184757695 - MIR SINE MIR -142 120 19 682 250 119 6 chr3 33279488 33279648 -184757510 - MER5B DNA MER1_type 0 178 1 2658 121 18 20 chr3 33280015 33280460 -184756698 - MER65A LTR ERV1 0 445 2 24 32 0 0 chr3 33281024 33281055 -184756103 + AT_rich Low_complexity Low_complexity 1 31 0 1354 221 132 10 chr3 33281296 33281698 -184755460 + MLT1C LTR MaLR 17 467 0 25 51 0 0 chr3 33281988 33282027 -184755131 + AT_rich Low_complexity Low_complexity 1 39 0 654 275 11 19 chr3 33285315 33285519 -184751639 - MIR SINE MIR -32 230 31 435 199 44 44 chr3 33285578 33285759 -184751399 - HAL1 LINE L1 -1457 1050 870 411 266 98 14 chr3 33285762 33285905 -184751253 + MER5B DNA MER1_type 5 159 -19 252 207 0 69 chr3 33285914 33285972 -184751186 - HAL1 LINE L1 -1658 849 796 * 1941 231 95 58 chr3 33285969 33286781 -184750377 + L1M4 LINE L1 3513 4354 -1792 1684 299 81 16 chr3 33286768 33287456 -184749702 - HAL1 LINE L1 -1697 810 78 * 431 298 8 8 chr3 33287888 33288012 -184749146 - L2 LINE L2 -9 3304 3181 1664 163 59 17 chr3 33288692 33288981 -184748177 + AluJo SINE Alu 1 301 -11 4116 162 18 42 chr3 33289157 33290028 -184747130 - L1MB8 LINE L1 0 6178 5329 3066 230 11 15 chr3 33290029 33290842 -184746316 - L1MB8 LINE L1 -1071 5075 4266 652 269 28 0 chr3 33290865 33291047 -184746111 - L1ME4a LINE L1 -392 5770 5584 2327 92 0 3 chr3 33292978 33293283 -184743875 + AluSc SINE Alu 1 304 -5 917 255 33 0 chr3 33294019 33294231 -184742927 + MER20 DNA MER1_type 1 219 0 1580 159 85 0 chr3 33294593 33294744 -184742414 - AluSx SINE Alu -5 307 170 279 0 0 0 chr3 33294744 33294775 -184742383 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1580 159 85 0 chr3 33294775 33294906 -184742252 - AluSx SINE Alu -142 170 1 627 60 24 0 chr3 33297708 33297832 -184739326 - AluSc SINE Alu 0 319 194 199 343 103 29 chr3 33297954 33298129 -184739029 + MIR SINE MIR 75 262 0 873 152 0 51 chr3 33298578 33298736 -184738422 + FRAM SINE Alu 13 162 -14 1256 250 114 45 chr3 33299190 33299663 -184737495 - MLT1H1 LTR MaLR -9 546 47 419 309 44 0 chr3 33300185 33300321 -184736837 + L2 LINE L2 2611 2752 -562 2824 219 16 19 chr3 33300343 33301027 -184736131 - L1MA9 LINE L1 -38 6274 5593 429 198 91 8 chr3 33301027 33301148 -184736010 + L1M2 LINE L1 4321 4451 -1695 1090 180 72 0 chr3 33301149 33301371 -184735787 - Tigger5 DNA MER2_type -1 2322 2085 388 186 0 0 chr3 33301392 33301451 -184735707 - Tigger5 DNA MER2_type -2261 62 4 4045 159 33 36 chr3 33301452 33302638 -184734520 + L1M2 LINE L1 4448 5632 -680 323 226 119 0 chr3 33302640 33302724 -184734434 + L2 LINE L2 2749 2842 -472 476 223 78 10 chr3 33302726 33302829 -184734329 - L2 LINE L2 0 3313 3204 1252 242 89 28 chr3 33302836 33303261 -184733897 + L2 LINE L2 2859 3309 -4 37555 80 10 19 chr3 33303307 33309465 -184727693 + L1PA6 LINE L1 55 6151 -3 2134 144 62 35 chr3 33310188 33310611 -184726547 + Tigger2a DNA MER2_type 1 434 0 1089 214 13 66 chr3 33310697 33310780 -184726378 + MER58B DNA MER1_type 39 125 -2295 2233 113 7 7 chr3 33310780 33311089 -184726069 - AluSx SINE Alu -3 309 1 1089 214 13 66 chr3 33311089 33311227 -184725931 + MER58B DNA MER1_type 125 241 -2179 2383 48 41 0 chr3 33311227 33311518 -184725640 + AluY SINE Alu 1 303 -8 1089 214 13 66 chr3 33311518 33311612 -184725546 + MER58B DNA MER1_type 241 338 -3 190 384 26 47 chr3 33311625 33311815 -184725343 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr3 33312495 33312517 -184724641 + AT_rich Low_complexity Low_complexity 1 22 0 2264 78 11 0 chr3 33312566 33312850 -184724308 - AluY SINE Alu -17 294 8 4546 169 15 36 chr3 33312899 33313290 -184723868 - L1MA7 LINE L1 -64 6227 5829 2250 128 0 0 chr3 33313290 33313602 -184723556 - AluSx SINE Alu 0 312 1 4546 169 15 36 chr3 33313602 33314130 -184723028 - L1MA7 LINE L1 -462 5829 5327 1155 219 27 19 chr3 33314126 33314492 -184722666 - L1MDb LINE L1 -3966 2440 2072 * 582 252 14 23 chr3 33314507 33314721 -184722437 - L1MDb LINE L1 -4385 2021 1810 * 6395 211 30 33 chr3 33314702 33316324 -184720834 - L1MDb LINE L1 -4799 1607 6 1967 218 15 17 chr3 33316375 33316843 -184720315 + MLT1C LTR MaLR 1 467 0 304 293 0 13 chr3 33317449 33317524 -184719634 + MIR3 SINE MIR 111 184 -24 1035 206 60 0 chr3 33317804 33318095 -184719063 - MER33 DNA MER1_type 0 363 1 1603 182 26 3 chr3 33318353 33318655 -184718503 - AluJb SINE Alu -3 309 1 248 339 68 70 chr3 33318780 33319235 -184717923 + L2 LINE L2 2305 2758 -556 370 171 137 0 chr3 33319300 33319393 -184717765 - MER5A DNA MER1_type -77 112 4 494 308 8 8 chr3 33320137 33320267 -184716891 - L2 LINE L2 -7 3265 3136 231 36 0 0 chr3 33320297 33320325 -184716833 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1597 230 49 11 chr3 33321048 33321792 -184715366 + MER99 DNA DNA 2 828 0 338 185 19 19 chr3 33323835 33323943 -184713215 + GA-rich Low_complexity Low_complexity 1 108 0 532 279 64 68 chr3 33324453 33324864 -184712294 + LTR16C LTR ERVL 2 491 0 22 35 0 0 chr3 33326400 33326429 -184710729 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 33327330 33327352 -184709806 + AT_rich Low_complexity Low_complexity 1 22 0 591 169 203 6 chr3 33327833 33327986 -184709172 + MER5A DNA MER1_type 1 188 -1 297 346 126 18 chr3 33328527 33328868 -184708290 - L2 LINE L2 -446 2868 2491 354 342 142 0 chr3 33328874 33329064 -184708094 - L3 LINE CR1 -283 1294 1078 275 346 85 7 chr3 33329121 33329274 -184707884 - MIR SINE MIR -48 214 50 1484 48 0 53 chr3 33329978 33330185 -184706973 - L1PA5 LINE L1 -1 6153 5958 390 296 0 0 chr3 33330825 33330923 -184706235 - MER5A DNA MER1_type -83 106 9 262 300 24 123 chr3 33331610 33331780 -184705378 - L3 LINE CR1 -434 1143 991 385 341 45 31 chr3 33331813 33332103 -184705055 - L2 LINE L2 -831 2483 2190 21 36 0 0 chr3 33332728 33332756 -184704402 + AT_rich Low_complexity Low_complexity 1 28 0 808 358 70 39 chr3 33334096 33334820 -184702338 + L2 LINE L2 2511 3244 -28 276 170 0 0 chr3 33335277 33335330 -184701828 + CT-rich Low_complexity Low_complexity 1 53 0 2051 109 4 0 chr3 33336857 33337132 -184700026 + AluSx SINE Alu 1 276 -36 486 0 0 0 chr3 33337155 33337209 -184699949 + (TA)n Simple_repeat Simple_repeat 2 55 0 350 310 9 17 chr3 33337209 33337325 -184699833 - MER5B DNA MER1_type -61 117 3 916 233 46 120 chr3 33339508 33339924 -184697234 + MLT1C LTR MaLR 6 467 0 213 266 72 78 chr3 33340179 33340315 -184696843 + MIR3 SINE MIR 41 177 -31 891 185 60 15 chr3 33340763 33340963 -184696195 - MER3 DNA MER1_type 0 209 1 525 188 211 0 chr3 33340973 33341106 -184696052 - MER5A DNA MER1_type -21 168 8 2272 102 7 3 chr3 33341287 33341621 -184695537 + AluSq SINE Alu 1 335 0 1288 181 0 13 chr3 33341704 33341930 -184695228 - MER58A DNA MER1_type 0 224 2 199 344 58 39 chr3 33342251 33342405 -184694753 - MIR3 SINE MIR -18 190 34 21 36 0 0 chr3 33342708 33342736 -184694422 + AT_rich Low_complexity Low_complexity 1 28 0 325 258 89 61 chr3 33343057 33343221 -184693937 - MIR SINE MIR -56 152 19 232 257 95 0 chr3 33343890 33343964 -184693194 - L1MC/D LINE L1 -891 5442 5362 358 297 72 34 chr3 33344046 33344464 -184692694 - L1MC/D LINE L1 -915 5231 4798 583 258 24 57 chr3 33346144 33346353 -184690805 + LTR67 LTR ERVL 356 557 0 233 253 111 95 chr3 33346877 33347067 -184690091 - L1ME3A LINE L1 -15 6155 5963 1129 285 98 25 chr3 33347120 33347718 -184689440 - L1ME3A LINE L1 -206 5964 5341 22 94 0 0 chr3 33348106 33348170 -184688988 + AT_rich Low_complexity Low_complexity 1 64 0 428 301 44 40 chr3 33348788 33349014 -184688144 + L1ME4a LINE L1 5598 5824 -297 180 0 0 0 chr3 33349093 33349113 -184688045 + (A)n Simple_repeat Simple_repeat 1 20 0 1010 213 23 14 chr3 33349730 33349946 -184687212 - MER20 DNA MER1_type -1 218 1 300 266 0 0 chr3 33350259 33350338 -184686820 + L1ME4a LINE L1 6042 6120 -1 295 238 32 0 chr3 33351501 33351564 -184685594 + MER81 DNA DNA 29 93 -21 304 297 22 0 chr3 33352312 33352403 -184684755 + L2 LINE L2 2967 3059 -213 242 252 118 82 chr3 33352455 33352557 -184684601 + L2 LINE L2 3172 3282 -31 1441 241 84 53 chr3 33352557 33353081 -184684077 + MLT1F LTR MaLR 1 540 -2 242 252 118 82 chr3 33353081 33353113 -184684045 + L2 LINE L2 3282 3311 -2 1263 233 49 56 chr3 33353416 33353807 -184683351 - LTR16A LTR ERVL -8 442 55 23 33 0 0 chr3 33354059 33354089 -184683069 + AT_rich Low_complexity Low_complexity 1 30 0 1755 204 105 4 chr3 33355015 33355472 -184681686 + L1M4 LINE L1 4639 5141 -1005 1619 164 27 27 chr3 33455536 33455834 -184581324 + AluJb SINE Alu 1 298 -14 22 0 0 0 chr3 33455948 33455970 -184581188 + AT_rich Low_complexity Low_complexity 1 22 0 669 268 34 19 chr3 33456079 33456284 -184580874 + MIR SINE MIR 6 213 -49 225 0 0 0 chr3 33456857 33456882 -184580276 + (A)n Simple_repeat Simple_repeat 1 25 0 248 352 39 31 chr3 33456940 33457068 -184580090 - L2 LINE L2 -6 3307 3179 406 295 147 10 chr3 33459427 33459620 -184577538 + MIR SINE MIR 16 231 -31 567 224 160 0 chr3 33459758 33459914 -184577244 + MER5A DNA MER1_type 9 189 0 333 0 0 0 chr3 33460015 33460052 -184577106 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 259 17 0 chr3 33460110 33460168 -184576990 + L2 LINE L2 3209 3267 -5 878 254 168 0 chr3 33461488 33461756 -184575402 - MLT1J1 LTR MaLR -133 313 1 193 125 31 0 chr3 33461961 33461993 -184575165 + MIR SINE MIR 163 195 -67 890 250 5 5 chr3 33462281 33462481 -184574677 + MIR SINE MIR 61 260 -2 370 271 181 7 chr3 33463110 33463254 -184573904 - MER5A DNA MER1_type -6 183 15 * 420 220 20 20 chr3 33463246 33463346 -184573812 + MER5A DNA MER1_type 90 189 0 230 304 0 25 chr3 33463717 33463796 -184573362 + MER81 DNA DNA 1 77 -37 471 271 199 0 chr3 33463827 33463978 -184573180 - MER5A DNA MER1_type 0 189 9 1797 161 7 3 chr3 33464190 33464475 -184572683 - AluJb SINE Alu -26 286 1 1396 140 133 36 chr3 33465135 33465443 -184571715 - MER44D DNA MER2_type -1 608 1 1532 176 107 3 chr3 33465532 33465851 -184571307 + MER82 DNA MER2_type 14 365 -288 521 246 0 29 chr3 33466020 33466041 -184571117 + MER58B DNA MER1_type 178 198 -2222 828 198 173 64 chr3 33466041 33466370 -184570788 - MLT1A1 LTR MaLR 0 365 1 521 246 0 29 chr3 33466370 33466486 -184570672 + MER58B DNA MER1_type 198 311 -30 412 189 3 9 chr3 33466478 33466567 -184570591 - MLT1I LTR MaLR -247 192 98 * 583 221 179 0 chr3 33466852 33466992 -184570166 - MER5A DNA MER1_type -21 168 4 1820 169 27 3 chr3 33467267 33467563 -184569595 + AluJb SINE Alu 1 303 -9 1870 190 38 5 chr3 33468491 33468913 -184568245 + L1MB7 LINE L1 5509 5944 -240 351 0 0 0 chr3 33469286 33469325 -184567833 + (GA)n Simple_repeat Simple_repeat 2 40 0 555 307 67 13 chr3 33470176 33470401 -184566757 - MIR SINE MIR -1 261 25 649 224 105 24 chr3 33472917 33473127 -184564031 + MIR SINE MIR 17 243 -19 1626 144 7 14 chr3 33473144 33473446 -184563712 - MER1B DNA MER1_type -1 328 1 956 242 33 0 chr3 33473455 33473666 -184563492 + MER20 DNA MER1_type 2 219 0 2511 74 0 0 chr3 33473703 33474012 -184563146 + AluY SINE Alu 1 309 -2 259 246 66 0 chr3 33474648 33474709 -184562449 + L2 LINE L2 3237 3301 -12 355 333 44 28 chr3 33475937 33476117 -184561041 + MIR SINE MIR 42 224 -38 1628 216 109 107 chr3 33476253 33477077 -184560081 + LTR1B LTR ERV1 1 826 0 297 0 0 0 chr3 33477643 33477676 -184559482 + (A)n Simple_repeat Simple_repeat 1 33 0 784 230 88 0 chr3 33477825 33478064 -184559094 - MER63 DNA MER1_type -5 1055 796 666 323 67 22 chr3 33478737 33479140 -184558018 + LTR16A LTR ERVL 16 436 -14 235 224 0 0 chr3 33479616 33479665 -184557493 - MIR SINE MIR -108 154 106 1013 233 134 37 chr3 33479729 33480162 -184556996 + LTR48 LTR ERV1 1 475 -312 809 187 124 42 chr3 33480163 33480404 -184556754 + LTR48B LTR ERV1 383 643 -1 1875 222 157 58 chr3 33480409 33481161 -184555997 + LTR1B LTR ERV1 1 826 0 197 420 59 0 chr3 33481324 33481443 -184555715 + MIR3 SINE MIR 31 156 -52 247 310 4 27 chr3 33481805 33481944 -184555214 + GA-rich Low_complexity Low_complexity 1 218 0 235 150 67 0 chr3 33482280 33482340 -184554818 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 201 158 0 0 chr3 33483018 33483056 -184554102 + A-rich Low_complexity Low_complexity 1 38 0 279 346 58 0 chr3 33483270 33483374 -184553784 - L2 LINE L2 0 3272 3163 716 189 15 15 chr3 33483705 33483837 -184553321 - FLAM_C SINE Alu 0 133 2 392 207 193 22 chr3 33484978 33485113 -184552045 - MER5A DNA MER1_type -31 158 1 1836 149 120 16 chr3 33486935 33487311 -184549847 - MSTB LTR MaLR -6 420 6 298 247 0 0 chr3 33487337 33487418 -184549740 - MER113 DNA MER1_type? -53 468 388 262 292 50 33 chr3 33488053 33488173 -184548985 - MIR SINE MIR -121 141 20 1524 203 22 7 chr3 33489069 33489345 -184547813 - AluJb SINE Alu -32 280 1 2358 86 3 0 chr3 33489647 33489948 -184547210 - AluY SINE Alu -9 302 1 397 305 94 42 chr3 33491332 33491561 -184545597 + MIR SINE MIR 10 259 -3 194 411 62 0 chr3 33491574 33491686 -184545472 - L2 LINE L2 -11 3261 3143 243 296 195 10 chr3 33493195 33493389 -184543769 - MIR SINE MIR -10 252 24 235 290 123 51 chr3 33493467 33493605 -184543553 + MIR3 SINE MIR 60 207 -1 196 274 24 83 chr3 33493664 33493748 -184543410 + L2 LINE L2 3185 3263 -9 * 502 307 13 7 chr3 33493745 33493895 -184543263 + MIR3 SINE MIR 30 180 -28 180 328 117 31 chr3 33494018 33494146 -184543012 + MIR3 SINE MIR 22 160 -48 2211 99 0 3 chr3 33494265 33494557 -184542601 + AluSg SINE Alu 3 293 -17 275 342 9 18 chr3 33495067 33495204 -184541954 - MIR SINE MIR -73 135 2 2173 159 45 37 chr3 33496454 33496514 -184540644 + L1MB4 LINE L1 5687 5745 -435 1653 148 0 4 chr3 33496514 33496764 -184540394 + AluSx SINE Alu 57 305 -7 2173 159 45 37 chr3 33496764 33497188 -184539970 + L1MB4 LINE L1 5745 6175 -5 21 0 0 0 chr3 33497255 33497276 -184539882 + AT_rich Low_complexity Low_complexity 1 21 0 306 221 0 0 chr3 33497483 33497551 -184539607 + MER116 DNA Mariner 13 80 0 320 269 67 72 chr3 33497822 33498015 -184539143 - Charlie8 DNA MER1_type -2225 192 1 205 154 77 0 chr3 33503362 33503401 -184533757 + MER91 DNA MER1_type 41 82 -108 186 200 0 0 chr3 33503901 33503941 -184533217 - L2 LINE L2 -6 3307 3268 335 176 54 14 chr3 33503941 33504015 -184533143 + MER91C DNA MER1_type 1 77 -63 206 311 189 9 chr3 33504193 33504299 -184532859 - L2 LINE L2 -240 3032 2908 22 35 0 0 chr3 33504489 33504518 -184532640 + AT_rich Low_complexity Low_complexity 1 29 0 869 274 73 17 chr3 33504591 33504709 -184532449 + MIR SINE MIR 6 116 -146 1326 255 0 13 chr3 33504709 33505015 -184532143 - AluJo SINE Alu -10 302 1 869 274 73 17 chr3 33505015 33505130 -184532028 + MIR SINE MIR 116 252 -10 253 278 133 11 chr3 33505150 33505240 -184531918 - L2 LINE L2 -16 3297 3197 247 253 53 53 chr3 33506094 33506189 -184530969 + L2 LINE L2 3178 3272 0 23 54 0 0 chr3 33506585 33506622 -184530536 + AT_rich Low_complexity Low_complexity 1 37 0 1484 198 3 45 chr3 33510068 33510381 -184526777 - AluJo SINE Alu -12 300 1 372 311 169 14 chr3 33510791 33511010 -184526148 - MIR SINE MIR -5 257 5 759 234 40 10 chr3 33511156 33511357 -184525801 - MER3 DNA MER1_type 0 209 3 359 264 85 0 chr3 33511423 33511529 -184525629 - MER105 DNA DNA -6 198 84 214 363 56 12 chr3 33511669 33511829 -184525329 + MIR3 SINE MIR 36 202 -6 212 189 0 0 chr3 33512219 33512256 -184524902 + A-rich Low_complexity Low_complexity 1 37 0 656 239 53 61 chr3 33513105 33513368 -184523790 + MIR SINE MIR 2 262 0 199 286 10 7 chr3 33513453 33513569 -184523589 - MIR SINE MIR -29 233 47 327 289 99 26 chr3 33515086 33515238 -184521920 + MIR3 SINE MIR 32 194 -14 2503 145 8 0 chr3 33516057 33516457 -184520701 - MER57A LTR ERV1 0 403 1 441 292 148 0 chr3 33516580 33516796 -184520362 - MIR SINE MIR -11 251 4 21 0 0 0 chr3 33516820 33516841 -184520317 + AT_rich Low_complexity Low_complexity 1 21 0 2089 103 17 27 chr3 33516841 33517141 -184520017 - AluSx SINE Alu -15 297 1 2704 213 121 34 chr3 33517167 33517915 -184519243 - L1MB7 LINE L1 -9 6175 5319 1961 121 14 0 chr3 33517915 33518195 -184518963 + AluSx SINE Alu 1 284 -28 2704 213 121 34 chr3 33518195 33518542 -184518616 - L1MB7 LINE L1 -865 5319 5004 22 0 0 0 chr3 33518628 33518650 -184518508 + AT_rich Low_complexity Low_complexity 1 22 0 866 262 100 16 chr3 33518718 33519125 -184518033 - L1ME3 LINE L1 -205 5957 5504 869 220 121 3 chr3 33520242 33520524 -184516634 + MER33 DNA MER1_type 6 320 -4 1591 184 75 0 chr3 33520925 33521245 -184515913 - MER2 DNA MER2_type 0 344 1 195 184 0 0 chr3 33522321 33522359 -184514799 + GA-rich Low_complexity Low_complexity 2 39 0 2466 64 0 13 chr3 33522459 33522770 -184514388 + AluY SINE Alu 1 307 -4 481 337 106 36 chr3 33522992 33523295 -184513863 - L3 LINE CR1 -7 1570 1247 609 305 44 0 chr3 33523298 33523501 -184513657 - MIR SINE MIR 0 262 51 862 153 0 0 chr3 33523948 33524072 -184513086 - FLAM_C SINE Alu -9 124 1 921 290 71 37 chr3 33524793 33525228 -184511930 + MLT1J2 LTR MaLR 1 450 0 191 190 155 35 chr3 33525581 33525639 -184511519 + MIR SINE MIR 8 72 -190 284 73 0 0 chr3 33526441 33526482 -184510676 + L2 LINE L2 3273 3313 0 660 251 56 11 chr3 33527990 33528169 -184508989 + MER5A DNA MER1_type 1 187 -2 311 261 14 0 chr3 33528244 33528313 -184508845 + L2 LINE L2 3243 3312 -1 2305 118 0 6 chr3 33528500 33528814 -184508344 - AluSx SINE Alu 0 312 1 330 271 10 10 chr3 33529785 33529881 -184507277 - MLT1L LTR MaLR -325 290 195 6110 52 33 1 chr3 33530229 33531049 -184506109 - L1PA7 LINE L1 -3 6151 5306 411 173 37 12 chr3 33531049 33531130 -184506028 + LTR16B LTR ERVL 382 464 0 492 249 90 55 chr3 33531763 33532108 -184505050 - Charlie2 DNA MER1_type -19 2843 2487 26 30 0 0 chr3 33532221 33532254 -184504904 + AT_rich Low_complexity Low_complexity 1 33 0 1033 251 86 19 chr3 33532307 33532669 -184504489 - Charlie2a DNA MER1_type -1013 1849 1464 359 258 75 13 chr3 33532724 33532883 -184504275 - Charlie2a DNA MER1_type -2300 562 394 356 338 127 0 chr3 33533164 33533306 -184503852 + MIR SINE MIR 46 205 -57 239 167 50 0 chr3 33533329 33533389 -184503769 + (TA)n Simple_repeat Simple_repeat 2 64 0 548 114 0 0 chr3 33533396 33533475 -184503683 + MADE1 DNA Mariner 1 79 -1 215 115 154 19 chr3 33533489 33533541 -184503617 + MIR SINE MIR 196 254 -8 681 211 0 0 chr3 33533836 33533964 -184503194 + FLAM_A SINE Alu 2 129 -4 21 0 0 0 chr3 33535334 33535355 -184501803 + AT_rich Low_complexity Low_complexity 1 21 0 523 265 114 12 chr3 33536029 33536097 -184501061 - MER5A DNA MER1_type -2 187 127 885 221 17 0 chr3 33536097 33536269 -184500889 + MER45A DNA AcHobo 2 176 -2 523 265 114 12 chr3 33536269 33536366 -184500792 - MER5A DNA MER1_type -62 127 5 315 276 95 82 chr3 33536379 33536622 -184500536 + MLT1J LTR MaLR 110 355 -156 42 57 0 0 chr3 33536997 33537067 -184500091 + AT_rich Low_complexity Low_complexity 1 70 0 277 257 79 21 chr3 33537452 33537592 -184499566 - MER103 DNA DNA -1 165 18 3057 183 48 42 chr3 33538672 33538816 -184498342 - L1MB4 LINE L1 0 6180 6038 2227 98 0 0 chr3 33538816 33539113 -184498045 + AluY SINE Alu 1 297 -14 3057 183 48 42 chr3 33539113 33539690 -184497468 - L1MB4 LINE L1 -142 6038 5454 314 104 0 0 chr3 33539711 33539759 -184497399 + Alu SINE Alu 250 297 -4 294 309 27 9 chr3 33539906 33540016 -184497142 - MER5A DNA MER1_type -42 147 36 * 630 233 8 0 chr3 33539918 33540038 -184497120 + MER5A DNA MER1_type 68 188 -1 244 298 42 10 chr3 33540120 33540216 -184496942 + MIR SINE MIR 54 151 -67 221 343 67 9 chr3 33540541 33540646 -184496512 + L2 LINE L2 3203 3313 0 2940 156 26 11 chr3 33540731 33541264 -184495894 + L1PA16 LINE L1 5625 6165 -1 1670 182 14 24 chr3 33541550 33541847 -184495311 + AluJo SINE Alu 1 294 -18 21 36 0 0 chr3 33543783 33543811 -184493347 + AT_rich Low_complexity Low_complexity 1 28 0 523 288 42 67 chr3 33543837 33544077 -184493081 - MIR SINE MIR -10 252 19 358 268 99 49 chr3 33544423 33544565 -184492593 - MIR SINE MIR -112 150 2 554 256 0 0 chr3 33544791 33544908 -184492250 - FLAM_C SINE Alu -26 117 1 306 0 0 0 chr3 33545665 33545699 -184491459 + (CA)n Simple_repeat Simple_repeat 2 35 0 366 21 0 0 chr3 33546911 33546959 -184490199 + L1PA6 LINE L1 6107 6154 0 266 267 89 11 chr3 33546981 33547135 -184490023 + MIR SINE MIR 43 261 -1 1631 187 32 0 chr3 33548644 33548927 -184488231 + AluJb SINE Alu 6 297 -15 358 342 30 35 chr3 33549920 33550151 -184487007 - L3 LINE CR1 -3 1574 1345 351 0 0 0 chr3 33551979 33552018 -184485140 + (CA)n Simple_repeat Simple_repeat 2 40 0 391 247 234 53 chr3 33552248 33552552 -184484606 - MLT1L LTR MaLR -94 521 163 1103 207 153 7 chr3 33552828 33553128 -184484030 + MER2 DNA MER2_type 1 344 0 464 270 146 24 chr3 33553151 33553644 -184483514 - HAL1 LINE L1 -129 2378 1826 687 292 155 22 chr3 33553676 33553998 -184483160 - HAL1 LINE L1 -937 1570 1206 449 209 191 36 chr3 33554010 33554065 -184483093 - Charlie1 DNA MER1_type 0 2761 2716 1801 139 63 41 chr3 33554065 33554432 -184482726 - THE1C LTR MaLR 0 375 1 449 209 191 36 chr3 33554432 33554601 -184482557 - Charlie1 DNA MER1_type -45 2716 2502 254 189 0 0 chr3 33554963 33555016 -184482142 - HAL1 LINE L1 -1487 1020 968 294 286 128 95 chr3 33555485 33555721 -184481437 + L1MEd LINE L1 322 549 -5570 652 189 8 8 chr3 33555721 33555848 -184481310 - FLAM_C SINE Alu -5 128 2 294 286 128 95 chr3 33555848 33555932 -184481226 + L1MEd LINE L1 549 629 -5490 2582 51 0 6 chr3 33555932 33556243 -184480915 - AluY SINE Alu -2 309 1 294 286 128 95 chr3 33556243 33556460 -184480698 + L1MEd LINE L1 629 878 -5241 22 56 0 0 chr3 33556469 33556505 -184480653 + AT_rich Low_complexity Low_complexity 1 36 0 398 250 53 15 chr3 33556508 33556640 -184480518 + HAL1 LINE L1 618 754 -1753 981 170 47 52 chr3 33556641 33556853 -184480305 + MER20 DNA MER1_type 2 212 -7 606 249 51 32 chr3 33556859 33557076 -184480082 + HAL1 LINE L1 747 967 -1540 310 224 158 29 chr3 33557069 33557315 -184479843 + L1MEd LINE L1 2187 2464 -3665 * 303 349 34 23 chr3 33557645 33557820 -184479338 - HAL1 LINE L1 -1838 669 493 309 275 28 9 chr3 33557895 33558004 -184479154 - HAL1 LINE L1 -2134 373 263 2759 216 38 55 chr3 33558973 33559766 -184477392 + L1MC4a LINE L1 7007 7785 -23 550 293 35 6 chr3 33559813 33559987 -184477171 - MIR SINE MIR 0 262 84 21 36 0 0 chr3 33560580 33560608 -184476550 + AT_rich Low_complexity Low_complexity 1 28 0 305 319 84 31 chr3 33560708 33560934 -184476224 + L1ME LINE L1 2233 2470 -3659 244 135 0 0 chr3 33561130 33561167 -184475991 + L1ME LINE L1 2711 2747 -3382 1508 164 141 10 chr3 33561207 33561511 -184475647 + MER2 DNA MER2_type 2 345 0 406 262 137 64 chr3 33561530 33561938 -184475220 + L1ME LINE L1 2824 3261 -2868 255 226 0 0 chr3 33562011 33562073 -184475085 + L1ME LINE L1 3409 3470 -2659 705 270 56 25 chr3 33562249 33562445 -184474713 + MER58A DNA MER1_type 23 224 0 2371 284 88 42 chr3 33562506 33562580 -184474578 - L2 LINE L2 -203 3110 3041 2293 166 31 5 chr3 33562580 33562997 -184474161 + MSTB1 LTR MaLR 1 428 -4 2371 284 88 42 chr3 33562997 33564074 -184473084 - L2 LINE L2 -272 3041 1903 250 266 139 25 chr3 33564134 33564292 -184472866 + L1ME LINE L1 3932 4107 -2022 1511 197 95 0 chr3 33564315 33564640 -184472518 + L1MA3 LINE L1 5939 6294 -11 552 277 196 8 chr3 33564831 33565330 -184471828 + L1ME LINE L1 4690 5282 -847 227 306 76 7 chr3 33565375 33565519 -184471639 + L1ME LINE L1 5364 5517 -628 287 287 63 14 chr3 33565632 33565775 -184471383 + L1ME LINE L1 5671 5820 -284 2888 126 52 40 chr3 33566316 33566926 -184470232 - MER4B LTR ERV1 0 779 1 3756 146 42 29 chr3 33567968 33568686 -184468472 + LTR8A LTR ERV1 1 727 0 595 268 106 0 chr3 33569824 33570003 -184467155 + MIR SINE MIR 21 218 -44 465 269 36 8 chr3 33570012 33570194 -184466964 - MER8 DNA MER2_type 0 239 6 447 269 223 0 chr3 33570440 33570570 -184466588 + MER5A DNA MER1_type 7 165 -24 312 194 16 0 chr3 33570582 33570644 -184466514 - MER58B DNA MER1_type -4 337 275 579 137 21 11 chr3 33572649 33572744 -184464414 - Tigger7 DNA MER2_type -1 2486 2391 1041 243 49 4 chr3 33572751 33572998 -184464160 - Tigger7 DNA MER2_type -292 258 1 1636 215 87 38 chr3 33573482 33573979 -184463179 + Charlie1b DNA MER1_type 1 521 -2 1390 211 65 0 chr3 33574011 33574319 -184462839 + MER2 DNA MER2_type 1 328 -17 655 177 211 0 chr3 33574347 33574494 -184462664 - Tigger3(Golem) DNA MER2_type -1 3028 2851 192 171 29 0 chr3 33574566 33574601 -184462557 + MIR SINE MIR 85 120 -142 1205 204 104 26 chr3 33575368 33575676 -184461482 + MER58B DNA MER1_type 5 336 -5 2114 106 0 0 chr3 33576324 33576599 -184460559 - AluSx SINE Alu 0 312 38 1341 193 57 15 chr3 33577462 33577615 -184459543 - AluJo SINE Alu -30 282 112 185 0 40 0 chr3 33577615 33577640 -184459518 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1341 193 57 15 chr3 33577640 33577751 -184459407 - AluJo SINE Alu -200 112 7 739 164 0 97 chr3 33577790 33577997 -184459161 + MER53 DNA DNA 3 189 0 184 268 134 71 chr3 33579276 33579341 -184457817 - MER5A DNA MER1_type -4 185 109 2438 59 3 13 chr3 33579341 33579646 -184457512 + AluY SINE Alu 1 302 -9 184 268 134 71 chr3 33579646 33579692 -184457466 - MER5A DNA MER1_type -80 109 67 482 319 84 33 chr3 33579981 33580254 -184456904 + L2 LINE L2 2822 3108 -205 230 297 70 31 chr3 33580399 33580527 -184456631 + MER5B DNA MER1_type 3 135 -43 812 206 19 7 chr3 33580542 33580697 -184456461 + MER20 DNA MER1_type 1 157 -62 582 302 16 21 chr3 33580730 33580919 -184456239 - MER5A DNA MER1_type -1 188 1 21 0 0 0 chr3 33582049 33582070 -184455088 + AT_rich Low_complexity Low_complexity 1 21 0 2255 102 0 10 chr3 33582053 33582358 -184454800 - AluY SINE Alu -9 302 1 789 161 98 54 chr3 33582377 33582601 -184454557 - L1MB8 LINE L1 -9 6169 5936 234 258 125 119 chr3 33582966 33583303 -184453855 + Charlie8 DNA MER1_type 1 1426 -991 1961 209 118 27 chr3 33583623 33584150 -184453008 + MLT1E2 LTR MaLR 52 626 0 463 286 93 16 chr3 33584923 33585105 -184452053 + L2 LINE L2 3118 3313 0 771 249 88 9 chr3 33585354 33585571 -184451587 - L2 LINE L2 -471 2843 2610 360 302 138 16 chr3 33586351 33586540 -184450618 + MIR SINE MIR 50 261 -1 362 349 7 7 chr3 33586969 33587118 -184450040 + GA-rich Low_complexity Low_complexity 3 151 0 730 297 76 96 chr3 33588271 33589103 -184448055 - L2 LINE L2 -834 2480 1666 550 330 12 6 chr3 33589090 33589263 -184447895 - MIR SINE MIR -61 201 28 * 207 0 0 0 chr3 33589353 33589376 -184447782 + (TA)n Simple_repeat Simple_repeat 2 24 0 299 303 40 30 chr3 33589399 33589498 -184447660 + L2 LINE L2 3173 3272 0 22 0 0 0 chr3 33591120 33591142 -184446016 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr3 33591316 33591340 -184445818 + (CA)n Simple_repeat Simple_repeat 2 25 0 201 74 0 0 chr3 33591557 33591584 -184445574 + (CA)n Simple_repeat Simple_repeat 1 27 0 356 254 176 59 chr3 33592629 33592936 -184444222 + L1M2 LINE L1 932 1274 -5575 837 244 6 0 chr3 33592998 33593178 -184443980 + MER5A DNA MER1_type 9 189 0 1091 173 129 37 chr3 33593851 33594184 -184442974 - MER47B DNA MER2_type 0 418 1 240 173 39 19 chr3 33594680 33594784 -184442374 + GA-rich Low_complexity Low_complexity 3 108 0 465 262 48 79 chr3 33594909 33595161 -184441997 - LTR16A1 LTR ERVL -2 455 212 2293 107 3 0 chr3 33598819 33599117 -184438041 + AluSp SINE Alu 1 299 -14 2222 180 5 9 chr3 33599139 33599562 -184437596 + L1MC3 LINE L1 6385 6805 -980 1503 183 7 48 chr3 33599673 33599963 -184437195 + AluJo SINE Alu 21 298 -14 420 325 41 0 chr3 33600840 33601009 -184436149 + MLT1L LTR MaLR 432 607 -8 324 291 148 22 chr3 33601088 33601270 -184435888 - L1ME3A LINE L1 -5 6165 5961 1116 285 44 25 chr3 33601327 33601878 -184435280 - L1ME3A LINE L1 -208 5962 5402 244 341 7 7 chr3 33603019 33603154 -184434004 + L1MEc LINE L1 81 215 -6181 700 23 0 0 chr3 33703462 33703549 -184333609 + L1PA4 LINE L1 6066 6152 -3 5567 137 27 21 chr3 33703550 33705553 -184331605 - L1MA3 LINE L1 -150 6155 4143 6923 66 5 0 chr3 33705553 33706931 -184330227 + L1PA5 LINE L1 4768 6151 -3 283 128 12 47 chr3 33708459 33708545 -184328613 + (TA)n Simple_repeat Simple_repeat 1 83 0 2018 194 70 19 chr3 33708550 33709035 -184328123 - L1MA9 LINE L1 -95 6217 5708 24 0 0 0 chr3 33709624 33709648 -184327510 + AT_rich Low_complexity Low_complexity 1 24 0 419 273 39 23 chr3 33710014 33710142 -184327016 + L2 LINE L2 3171 3300 -13 407 252 75 25 chr3 33710279 33710438 -184326720 - MER20B DNA MER1_type -616 167 1 1916 163 7 0 chr3 33712419 33712719 -184324439 - AluSx SINE Alu -5 307 6 459 238 10 20 chr3 33713999 33714100 -184323058 - L2 LINE L2 0 3272 3173 241 324 78 34 chr3 33714357 33714653 -184322505 - L1ME LINE L1 -347 5774 5466 1043 227 46 44 chr3 33715154 33715387 -184321771 + MER39 LTR ERV1 181 412 -295 603 0 0 0 chr3 33715387 33715454 -184321704 + (CA)n Simple_repeat Simple_repeat 2 68 0 1043 227 46 44 chr3 33715454 33715613 -184321545 + MER39 LTR ERV1 412 696 -11 619 291 136 25 chr3 33715694 33716210 -184320948 - L1ME3A LINE L1 -299 5871 5299 780 254 0 5 chr3 33717419 33717604 -184319554 - FRAM SINE Alu 0 176 1 338 233 140 46 chr3 33717614 33717789 -184319369 - MIR SINE MIR -41 221 24 1533 178 259 0 chr3 33719242 33719613 -184317545 - MLT1C LTR MaLR 0 467 1 258 116 0 0 chr3 33720115 33720158 -184317000 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2356 265 50 26 chr3 33720162 33720890 -184316268 - MER20B DNA MER1_type -4 779 35 228 228 0 0 chr3 33721542 33721599 -184315559 + CT-rich Low_complexity Low_complexity 4 60 0 413 81 65 0 chr3 33722407 33722469 -184314689 + MADE1 DNA Mariner 1 66 -14 261 368 88 0 chr3 33723786 33723900 -184313258 + MIR SINE MIR 20 143 -119 191 355 16 0 chr3 33724336 33724398 -184312760 - MIR3 SINE MIR -4 204 142 273 221 26 13 chr3 33725507 33725584 -184311574 + MER116 DNA Mariner 3 80 0 2047 149 0 0 chr3 33725735 33726117 -184311041 + AluSc SINE Alu 3 384 0 22 0 0 0 chr3 33726119 33726141 -184311017 + AT_rich Low_complexity Low_complexity 1 22 0 612 324 43 8 chr3 33728489 33728742 -184308416 + L2 LINE L2 3051 3312 -1 219 344 0 0 chr3 33728961 33729025 -184308133 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 237 284 49 49 chr3 33729033 33729114 -184308044 - L2 LINE L2 -32 3281 3201 636 268 164 0 chr3 33729407 33729620 -184307538 + MIR SINE MIR 2 249 -13 250 269 99 50 chr3 33729970 33730120 -184307038 - MIR SINE MIR -64 144 10 1420 260 72 52 chr3 33730800 33731353 -184305805 - MLT1E LTR MaLR -29 564 1 199 303 66 33 chr3 33732055 33732177 -184304981 + MIR SINE MIR 21 146 -116 246 86 0 0 chr3 33732316 33732351 -184304807 + MLT2F LTR ERVL 107 141 -522 1245 309 56 12 chr3 33732558 33733037 -184304121 - L2 LINE L2 -4 3309 2810 204 279 73 0 chr3 33733205 33733273 -184303885 + L2 LINE L2 3186 3258 -14 1452 202 45 64 chr3 33734746 33735244 -184301914 + MER39 LTR ERV1 1 707 0 183 463 8 8 chr3 33735802 33735925 -184301233 - L2 LINE L2 -23 3249 3127 185 308 0 0 chr3 33736889 33736941 -184300217 - MIR SINE MIR -50 212 161 817 267 155 18 chr3 33737023 33737416 -184299742 + L1ME3A LINE L1 5674 6120 -50 224 261 29 0 chr3 33738166 33738235 -184298923 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 229 241 63 25 chr3 33738390 33738469 -184298689 - L3 LINE CR1 -1213 364 283 576 147 20 0 chr3 33738753 33738855 -184298303 - L1MA6 LINE L1 0 6300 6197 930 102 30 18 chr3 33738861 33739028 -184298130 + L1M2 LINE L1 5321 5489 -811 543 269 7 14 chr3 33739028 33739173 -184297985 - MIR SINE MIR -22 240 97 1649 56 5 0 chr3 33739260 33739474 -184297684 - L1PA5 LINE L1 0 6154 5940 242 387 42 8 chr3 33739476 33739595 -184297563 - L2 LINE L2 -12 3260 3138 2091 128 3 0 chr3 33739721 33740017 -184297141 - AluJb SINE Alu -15 297 1 464 274 67 104 chr3 33740253 33740610 -184296548 + MLT1H LTR MaLR 40 383 -26 190 143 29 0 chr3 33740708 33740743 -184296415 + L2 LINE L2 3039 3074 -239 1146 226 45 3 chr3 33740850 33741142 -184296016 + MER33 DNA MER1_type 21 324 0 357 320 31 16 chr3 33742295 33742423 -184294735 - MIR SINE MIR -56 152 23 630 204 140 6 chr3 33742509 33742666 -184294492 + MER5B DNA MER1_type 1 178 0 796 211 29 34 chr3 33743026 33743234 -184293924 + MER3 DNA MER1_type 2 208 -1 322 315 29 53 chr3 33744227 33744295 -184292863 + MIR SINE MIR 20 88 -174 465 64 0 170 chr3 33744295 33744389 -184292769 + MADE1 DNA Mariner 1 78 -2 322 315 29 53 chr3 33744389 33744512 -184292646 + MIR SINE MIR 88 203 -59 365 66 49 0 chr3 33744692 33744753 -184292405 - L1MB4 LINE L1 0 6180 6117 2881 168 66 15 chr3 33744755 33745362 -184291796 - L1MB4 LINE L1 -226 5957 5320 915 267 4 28 chr3 33745560 33745807 -184291351 - MIR SINE MIR -5 257 17 796 299 94 39 chr3 33746186 33746620 -184290538 - L2 LINE L2 0 3313 2856 1169 229 38 32 chr3 33748224 33748595 -184288563 - MLT1A2 LTR MaLR 0 374 2 24 53 0 0 chr3 33748689 33748727 -184288431 + AT_rich Low_complexity Low_complexity 1 38 0 1625 208 45 51 chr3 33748976 33749424 -184287734 + MLT1D LTR MaLR 1 445 -60 1809 149 4 0 chr3 33749435 33749710 -184287448 + AluJb SINE Alu 11 286 -26 1007 179 45 2 chr3 33750022 33750317 -184286841 - MLT1A1 LTR MaLR -2 363 1 27 62 0 0 chr3 33750532 33750580 -184286578 + AT_rich Low_complexity Low_complexity 1 48 0 545 279 13 13 chr3 33751807 33751961 -184285197 + MIR SINE MIR 75 228 -34 23 33 0 0 chr3 33751977 33752007 -184285151 + AT_rich Low_complexity Low_complexity 1 30 0 1495 218 70 33 chr3 33752354 33752843 -184284315 + MLT1D LTR MaLR 1 626 0 561 326 98 68 chr3 33753039 33753982 -184283176 - L2 LINE L2 -452 2862 1892 725 266 142 4 chr3 33754062 33754288 -184282870 - MIR SINE MIR -5 257 1 269 281 52 52 chr3 33754288 33754427 -184282731 - MIR SINE MIR -62 200 62 986 231 79 119 chr3 33755512 33756009 -184281149 - MLT1J1 LTR MaLR 0 446 1 1289 209 122 40 chr3 33756197 33756599 -184280559 + MSTB2 LTR MaLR 23 457 0 255 323 60 23 chr3 33756853 33756986 -184280172 + MARNA DNA Mariner 75 212 -374 279 373 9 0 chr3 33756986 33757096 -184280062 - L3 LINE CR1 -8 1569 1459 842 327 144 20 chr3 33757597 33758202 -184278956 - L3 LINE CR1 -148 1429 750 21 0 0 0 chr3 33759295 33759316 -184277842 + AT_rich Low_complexity Low_complexity 1 21 0 5257 193 26 8 chr3 33762417 33764065 -184273093 + L1MB7 LINE L1 4229 5908 -270 * 14683 188 40 12 chr3 33764063 33767407 -184269751 + L1MA4A LINE L1 10 3444 -3404 30044 125 11 58 chr3 33767419 33773877 -184263281 + L1PA7 LINE L1 12 6151 -3 365 280 91 0 chr3 33773875 33774018 -184263140 + L1MA4A LINE L1 3435 3590 -3258 * 10188 157 23 25 chr3 33774020 33776211 -184260947 + L1MA4A LINE L1 4007 6185 -820 2097 117 7 0 chr3 33776211 33776494 -184260664 - AluSg SINE Alu -25 285 1 10188 157 23 25 chr3 33776494 33777312 -184259846 + L1MA4A LINE L1 6185 7003 -2 1010 145 77 133 chr3 33777309 33777373 -184259785 + L1MB7 LINE L1 5879 5945 -239 * 281 25 25 0 chr3 33777373 33777413 -184259745 - MADE1 DNA Mariner -3 77 37 1010 145 77 133 chr3 33777413 33777633 -184259525 + L1MB7 LINE L1 5945 6184 0 21 0 0 0 chr3 33778286 33778307 -184258851 + AT_rich Low_complexity Low_complexity 1 21 0 212 250 191 0 chr3 33778938 33779006 -184258152 + L2 LINE L2 3229 3309 -4 373 315 80 63 chr3 33779879 33780165 -184256993 + L1ME LINE L1 4 294 -5776 5131 229 100 54 chr3 33780635 33781850 -184255308 + L1ME LINE L1 3031 4188 -1912 2139 144 11 40 chr3 33781850 33781936 -184255222 - MER47A DNA MER2_type -1957 366 279 1877 159 51 0 chr3 33781936 33782231 -184254927 + AluSg SINE Alu 1 310 0 2139 144 11 40 chr3 33782231 33782520 -184254638 - MER47A DNA MER2_type -2044 279 2 5131 229 100 54 chr3 33782520 33783650 -184253508 + L1ME LINE L1 4188 5473 -627 492 157 207 71 chr3 33784277 33784417 -184252741 - MER3 DNA MER1_type -1 208 50 282 337 0 0 chr3 33784541 33784627 -184252531 + MIR SINE MIR 176 261 -1 180 0 0 0 chr3 33786957 33786977 -184250181 + (A)n Simple_repeat Simple_repeat 1 20 0 827 263 95 48 chr3 33787088 33787655 -184249503 + HAL1b LINE L1 311 904 -444 234 0 0 0 chr3 33789863 33789889 -184247269 + (T)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr3 33789913 33789933 -184247225 + (A)n Simple_repeat Simple_repeat 1 20 0 770 170 43 48 chr3 33790842 33791030 -184246128 + MER5A DNA MER1_type 1 187 -2 1036 211 9 52 chr3 33791042 33791274 -184245884 - MER58A DNA MER1_type -2 222 1 2076 159 0 6 chr3 33791353 33791667 -184245491 - AluJo SINE Alu 0 312 1 1684 299 115 48 chr3 33791677 33792851 -184244307 - HAL1 LINE L1 -221 2286 1192 2128 135 0 16 chr3 33792851 33793163 -184243995 + AluSx SINE Alu 5 311 -1 1684 299 115 48 chr3 33793163 33794130 -184243028 - HAL1 LINE L1 -1315 1192 2 24 32 0 0 chr3 33796709 33796740 -184240418 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr3 33797834 33797868 -184239290 + (TA)n Simple_repeat Simple_repeat 2 35 0 1757 169 11 4 chr3 33797868 33798146 -184239012 - AluJb SINE Alu -27 285 6 3418 171 20 5 chr3 33798300 33798953 -184238205 + L1MB7 LINE L1 5505 6167 -17 1685 184 7 26 chr3 33798965 33799274 -184237884 + AluJo SINE Alu 1 303 -9 1909 187 68 35 chr3 33799909 33800026 -184237132 + MLT1D LTR MaLR 3 115 -390 1981 122 14 0 chr3 33800026 33800155 -184237003 + AluSx SINE Alu 1 127 -179 324 0 0 0 chr3 33800155 33800191 -184236967 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1981 122 14 0 chr3 33800191 33800363 -184236795 + AluSx SINE Alu 127 306 0 1909 187 68 35 chr3 33800363 33800731 -184236427 + MLT1D LTR MaLR 115 505 0 2272 87 3 50 chr3 33801894 33802217 -184234941 + AluSp SINE Alu 1 308 -5 1168 313 34 2 chr3 33802263 33802675 -184234483 + MLT1J2 LTR MaLR 1 425 -25 301 290 21 0 chr3 33803577 33803670 -184233488 + MIR SINE MIR 110 204 -58 1007 128 7 0 chr3 33803675 33803816 -184233342 + AluSq/x SINE Alu 1 142 -171 228 35 0 0 chr3 33803916 33803945 -184233213 + (CA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr3 33804737 33804766 -184232392 + (T)n Simple_repeat Simple_repeat 1 29 0 281 298 25 83 chr3 33806290 33806411 -184230747 - L2 LINE L2 -25 3247 3134 556 345 114 30 chr3 33806562 33807086 -184230072 - L2 LINE L2 -452 2862 2295 269 78 98 0 chr3 33807458 33807509 -184229649 + L1MA1 LINE L1 5893 5948 -354 293 167 0 0 chr3 33807510 33807558 -184229600 + Alu SINE Alu 1 48 -255 231 114 0 0 chr3 33808110 33808145 -184229013 + (CA)n Simple_repeat Simple_repeat 1 35 0 231 289 24 0 chr3 33808629 33808712 -184228446 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 2250 115 3 0 chr3 33811065 33811361 -184225797 - AluSx SINE Alu -15 297 1 375 291 103 12 chr3 33812472 33812637 -184224521 - MIR SINE MIR -10 252 73 370 305 75 25 chr3 33813155 33813355 -184223803 - MLT1L LTR MaLR -5 610 401 237 250 0 0 chr3 33813453 33813523 -184223635 - MLT1L LTR MaLR -333 178 115 1827 155 11 0 chr3 33814450 33814727 -184222431 + AluJb SINE Alu 6 285 -27 283 281 182 8 chr3 33815193 33815314 -184221844 + MIR3 SINE MIR 67 208 0 381 322 17 0 chr3 33815718 33815833 -184221325 - L2 LINE L2 0 3272 3156 950 236 161 6 chr3 33816004 33816326 -184220832 + L1ME1 LINE L1 5790 6161 -5 249 255 0 122 chr3 33818491 33818533 -184218625 - MIR SINE MIR -105 103 78 1771 148 57 44 chr3 33818533 33818899 -184218259 - THE1C LTR MaLR 0 375 5 249 255 0 122 chr3 33818899 33818954 -184218204 - MIR SINE MIR -130 78 18 23 33 0 0 chr3 33820159 33820189 -184216969 + AT_rich Low_complexity Low_complexity 1 30 0 289 172 0 52 chr3 33820246 33820304 -184216854 + L2 LINE L2 3259 3313 0 391 254 170 38 chr3 33820455 33820624 -184216534 + MIR3 SINE MIR 5 186 -52 593 323 20 31 chr3 33821553 33821807 -184215351 - MIR SINE MIR -10 252 2 1116 244 101 24 chr3 33822024 33822557 -184214601 + L1MC5 LINE L1 6955 7528 -433 182 88 0 29 chr3 33822582 33822616 -184214542 + (TA)n Simple_repeat Simple_repeat 2 34 0 2646 86 5 21 chr3 33822626 33822999 -184214159 - L1PA8A LINE L1 -9 6122 5756 349 261 170 20 chr3 33824101 33824254 -184212904 + MER5B DNA MER1_type 3 178 0 215 326 177 17 chr3 33824454 33824635 -184212523 + MIR SINE MIR 34 243 -19 23 0 0 0 chr3 33824871 33824894 -184212264 + AT_rich Low_complexity Low_complexity 1 23 0 1640 269 56 5 chr3 33825698 33826274 -184210884 + L1ME3A LINE L1 5566 6170 0 2225 112 3 0 chr3 33826716 33827010 -184210148 - AluSg SINE Alu -15 295 1 739 245 80 24 chr3 33827495 33827707 -184209451 + MER58A DNA MER1_type 1 224 0 676 239 96 10 chr3 33828224 33828421 -184208737 - MIR SINE MIR 0 262 49 618 251 54 67 chr3 33828473 33828513 -184208645 - MER58A DNA MER1_type -2196 224 185 2055 153 3 0 chr3 33828513 33828821 -184208337 + AluSx SINE Alu 1 309 -3 618 251 54 67 chr3 33828821 33829003 -184208155 - MER58A DNA MER1_type -2235 185 5 232 344 141 25 chr3 33829680 33829843 -184207315 + MER91A DNA MER1_type 2 183 -13 2260 173 18 43 chr3 33831111 33831550 -184205608 + MSTA LTR MaLR 1 428 0 365 335 115 0 chr3 33831588 33831788 -184205370 - L2 LINE L2 0 3313 3091 1154 156 25 0 chr3 33833216 33833415 -184203743 - Tigger5 DNA MER2_type 0 2323 2120 1124 160 0 6 chr3 33833432 33833601 -184203557 + AluJb SINE Alu 129 296 -16 903 129 14 0 chr3 33833622 33833769 -184203389 - L1MA3 LINE L1 0 6305 6157 29573 55 7 1 chr3 33833784 33839835 -184197323 + L1PA4 LINE L1 11 6096 -59 224 327 160 40 chr3 33840120 33840270 -184196888 - L2 LINE L2 -188 3084 2917 389 327 80 24 chr3 33840363 33840614 -184196544 - L2 LINE L2 -556 2758 2494 2533 62 13 0 chr3 33841005 33841309 -184195849 - AluY SINE Alu -3 308 1 228 246 18 0 chr3 33841675 33841732 -184195426 - MIR SINE MIR -76 186 129 489 296 83 29 chr3 33844026 33844266 -184192892 + MIR SINE MIR 10 262 0 1919 196 42 11 chr3 33845055 33845433 -184191725 + MLT1B LTR MaLR 1 390 0 292 286 75 38 chr3 33845950 33846083 -184191075 + MIR3 SINE MIR 65 202 -6 716 236 89 29 chr3 33848108 33848354 -184188804 + MIR SINE MIR 2 262 0 189 0 0 0 chr3 33848519 33848540 -184188618 + (A)n Simple_repeat Simple_repeat 1 21 0 717 250 65 34 chr3 33849301 33849637 -184187521 - LTR33A LTR ERVL -2 521 140 331 111 0 19 chr3 33849778 33849832 -184187326 + LTR33A LTR ERVL 6 58 -465 414 236 142 20 chr3 33850031 33850122 -184187036 + MIR SINE MIR 2 81 -181 2004 199 40 0 chr3 33850122 33850473 -184186685 + MLT1A1 LTR MaLR 1 365 0 414 236 142 20 chr3 33850473 33850529 -184186629 + MIR SINE MIR 81 167 -95 612 268 41 21 chr3 33851310 33851504 -184185654 + MIR SINE MIR 65 262 0 243 0 0 0 chr3 33852324 33852351 -184184807 + (T)n Simple_repeat Simple_repeat 1 27 0 1880 107 4 0 chr3 33853105 33853358 -184183800 - AluSg SINE Alu -14 296 43 488 262 32 8 chr3 33853855 33853981 -184183177 + MER91B DNA MER1_type 2 130 -60 333 199 253 54 chr3 33854134 33854188 -184182970 + Charlie4 DNA MER1_type 32 74 -1887 1516 147 0 13 chr3 33854188 33854420 -184182738 - AluJb SINE Alu -83 229 1 333 199 253 54 chr3 33854420 33854531 -184182627 + Charlie4 DNA MER1_type 74 230 -1731 463 226 88 0 chr3 33854573 33854675 -184182483 + Charlie4 DNA MER1_type 1830 1940 -21 201 39 0 0 chr3 33854677 33854703 -184182455 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2110 110 0 23 chr3 33855628 33855927 -184181231 + AluSx SINE Alu 1 292 -20 261 174 22 0 chr3 33855927 33855973 -184181185 + Tigger5 DNA MER2_type 8 54 -2269 * 342 188 29 14 chr3 33855944 33856013 -184181145 + Tigger5 DNA MER2_type 2251 2320 -3 394 164 52 112 chr3 33856051 33856167 -184180991 + Tigger5 DNA MER2_type 2215 2323 0 3924 178 43 1 chr3 33856972 33857709 -184179449 + L1MB7 LINE L1 5417 6184 0 207 211 140 0 chr3 33858120 33858177 -184178981 - MIR SINE MIR -108 154 90 1088 279 73 18 chr3 33859372 33859755 -184177403 + L2 LINE L2 2365 2768 -546 282 277 297 15 chr3 33859830 33860025 -184177133 - MIR SINE MIR 0 262 13 180 176 0 0 chr3 33861442 33861476 -184175682 + GA-rich Low_complexity Low_complexity 3 36 0 1714 149 30 37 chr3 33862026 33862322 -184174836 + AluSx SINE Alu 4 297 -15 1290 213 5 0 chr3 33862724 33862945 -184174213 + MER58A DNA MER1_type 3 224 0 1017 338 69 28 chr3 33863146 33863357 -184173801 - L3 LINE CR1 -137 1440 1239 2270 125 3 0 chr3 33863357 33863668 -184173490 - AluSx SINE Alu 0 312 1 1017 338 69 28 chr3 33863668 33863965 -184173193 - L3 LINE CR1 -338 1239 911 2266 84 19 23 chr3 33864050 33864359 -184172799 - AluY SINE Alu -3 308 1 2429 91 3 0 chr3 33864407 33864715 -184172443 - AluSg SINE Alu -1 309 1 1050 313 29 8 chr3 33864891 33865274 -184171884 + MLT1I LTR MaLR 17 407 -2 316 196 147 69 chr3 33865290 33865392 -184171766 - L2 LINE L2 0 3313 3204 262 368 8 17 chr3 33865517 33865634 -184171524 + MIR SINE MIR 19 134 -74 196 339 51 42 chr3 33865648 33865766 -184171392 - L3 LINE CR1 -69 1508 1390 221 249 142 91 chr3 33866021 33866218 -184170940 - L2 LINE L2 -217 3055 2849 456 325 11 43 chr3 33867204 33867392 -184169766 - MIR SINE MIR -46 216 35 627 274 21 52 chr3 33867571 33867859 -184169299 + Charlie8 DNA MER1_type 47 272 -2145 285 269 10 58 chr3 33867926 33868030 -184169128 + MIR SINE MIR 58 156 -106 507 337 72 54 chr3 33868148 33868480 -184168678 + LTR67 LTR ERVL 149 486 -71 1325 193 86 82 chr3 33868588 33868710 -184168448 - MER69 DNA AcHobo -12 2514 2394 1929 159 0 3 chr3 33868710 33869006 -184168152 + AluJo SINE Alu 3 297 -15 1325 193 86 82 chr3 33869006 33869421 -184167737 - MER69 DNA AcHobo -132 2394 1975 30 45 0 0 chr3 33869572 33869616 -184167542 + AT_rich Low_complexity Low_complexity 1 44 0 1462 134 22 5 chr3 33869617 33869841 -184167317 - L1PA16 LINE L1 -9 6157 5930 732 112 0 0 chr3 33869976 33870083 -184167075 - L1PA16 LINE L1 -296 5870 5764 254 345 11 0 chr3 33870089 33870176 -184166982 - MER20B DNA MER1_type -580 203 116 839 271 110 3 chr3 33870195 33870487 -184166671 - MER69 DNA AcHobo -900 326 4 2065 122 0 17 chr3 33870610 33870904 -184166254 - AluSx SINE Alu -23 289 1 289 292 31 10 chr3 33871855 33871951 -184165207 - MIR3 SINE MIR -30 178 81 218 133 0 22 chr3 33872264 33872309 -184164849 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 2083 133 3 7 chr3 33876421 33876723 -184160435 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr3 33876847 33876868 -184160290 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 33877596 33877629 -184159529 + AT_rich Low_complexity Low_complexity 1 33 0 1118 255 106 37 chr3 33877847 33878357 -184158801 - MLT1H LTR MaLR -4 545 1 262 231 111 75 chr3 33878876 33879075 -184158083 + HAL1 LINE L1 798 1003 -1504 4349 139 8 3 chr3 33879880 33880512 -184156646 - MER41B LTR ERV1 0 635 1 1249 276 74 72 chr3 33881733 33881827 -184155331 + HAL1 LINE L1 1088 1180 -1327 2268 35 0 0 chr3 33881827 33882085 -184155073 - L1PA4 LINE L1 -3 6152 5895 1249 276 74 72 chr3 33882085 33882777 -184154381 + HAL1 LINE L1 1180 1875 -632 351 298 109 37 chr3 33882873 33883222 -184153936 + HAL1 LINE L1 2019 2392 -115 2009 159 0 0 chr3 33883223 33883525 -184153633 + AluSx SINE Alu 1 302 -10 28491 62 4 3 chr3 33883537 33889679 -184147479 + L1PA5 LINE L1 1 6154 0 689 248 74 41 chr3 33890000 33890242 -184146916 + MIR SINE MIR 13 262 0 248 206 16 32 chr3 33890978 33891041 -184146117 + U7 snRNA snRNA 1 62 -1 239 237 169 0 chr3 33891979 33892038 -184145120 - L2 LINE L2 -59 3254 3186 1090 318 92 11 chr3 33892446 33892893 -184144265 + L2 LINE L2 2831 3313 0 351 0 0 0 chr3 33893082 33893121 -184144037 + (CA)n Simple_repeat Simple_repeat 2 40 0 2226 156 23 0 chr3 33894187 33894577 -184142581 + MER57A LTR ERV1 1 399 -4 607 322 99 23 chr3 33896561 33896603 -184140555 + L2 LINE L2 2987 3024 -289 1175 194 19 5 chr3 33896603 33896819 -184140339 + MER20 DNA MER1_type 1 219 0 607 322 99 23 chr3 33896819 33897080 -184140078 + L2 LINE L2 3024 3313 0 304 237 37 74 chr3 33897449 33897584 -184139574 + MLT1L LTR MaLR 205 334 -281 293 200 80 72 chr3 33897587 33897712 -184139446 + MLT1J LTR MaLR 386 511 0 441 0 0 0 chr3 33898010 33898059 -184139099 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 350 43 8 chr3 33898207 33898324 -184138834 + L2 LINE L2 3137 3257 -15 2547 80 0 0 chr3 33900370 33900672 -184136486 + AluSg SINE Alu 1 302 -8 413 264 70 30 chr3 33900915 33901116 -184136042 - MLT1H LTR MaLR -57 492 284 186 341 24 63 chr3 33901800 33901926 -184135232 - L2 LINE L2 -11 3261 3141 246 350 0 88 chr3 33902104 33902241 -184134917 - L2 LINE L2 -2122 1192 1068 210 247 221 13 chr3 33903128 33903205 -184133953 + MIR SINE MIR 40 132 -130 32 26 0 0 chr3 33903279 33903318 -184133840 + AT_rich Low_complexity Low_complexity 1 39 0 583 254 240 33 chr3 33903390 33903752 -184133406 - Charlie7 DNA MER1_type -2121 491 55 784 210 132 6 chr3 33903759 33903926 -184133232 - MER5A DNA MER1_type -1 188 1 515 270 102 58 chr3 33904733 33905231 -184131927 - MLT1G1 LTR MaLR -2 593 23 707 243 29 33 chr3 33905506 33905716 -184131442 + L2 LINE L2 3103 3311 -2 237 225 38 12 chr3 33906226 33906306 -184130852 + CT-rich Low_complexity Low_complexity 4 85 0 591 180 0 0 chr3 33907278 33907378 -184129780 - 5S rRNA rRNA -21 100 1 310 297 70 57 chr3 33907796 33907979 -184129179 + MIR SINE MIR 9 192 -70 230 366 0 0 chr3 33907982 33908053 -184129105 - L2 LINE L2 -2 3270 3200 741 274 37 14 chr3 33909929 33910144 -184127014 + MIR SINE MIR 22 241 -21 213 39 0 0 chr3 33910483 33910509 -184126649 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 236 338 14 14 chr3 33911179 33911253 -184125905 - MIR3 SINE MIR -33 175 102 28783 115 14 54 chr3 33911499 33917911 -184119247 - L1PA7 LINE L1 0 6154 12 1805 268 107 30 chr3 33918248 33919273 -184117885 + L2 LINE L2 2192 3311 -2 238 182 0 18 chr3 33919350 33919405 -184117753 - Charlie4 DNA MER1_type -25 1936 1883 252 366 136 0 chr3 33919502 33919693 -184117465 - L2 LINE L2 -348 2966 2750 297 75 0 0 chr3 33920171 33920211 -184116947 + (T)n Simple_repeat Simple_repeat 1 40 0 1040 171 49 0 chr3 33920232 33920396 -184116762 - AluJb SINE Alu -140 172 1 1803 253 87 13 chr3 33920442 33920991 -184116167 - MLT1G LTR MaLR 0 590 1 263 362 16 16 chr3 33921185 33921312 -184115846 - MIR SINE MIR -66 142 16 1504 187 73 33 chr3 33922518 33922818 -184114340 + AluJb SINE Alu 1 312 0 290 269 85 54 chr3 33924183 33924313 -184112845 - L2 LINE L2 -1 3312 3179 495 275 20 13 chr3 33924317 33924466 -184112692 - L2 LINE L2 -2 3311 3162 2249 79 21 0 chr3 33924625 33924915 -184112243 + AluSp SINE Alu 1 296 -17 240 228 0 63 chr3 33924919 33924998 -184112160 + L1MC/D LINE L1 5696 5769 -2039 210 259 0 19 chr3 33925057 33925111 -184112047 + (TATG)n Simple_repeat Simple_repeat 1 53 0 715 282 167 30 chr3 33925724 33926096 -184111062 - MLT1D LTR MaLR 0 505 83 * 768 184 7 0 chr3 33926094 33926230 -184110928 + MSTD LTR MaLR 10 146 -250 252 223 21 64 chr3 33926247 33926341 -184110817 - MLT1D LTR MaLR -415 90 1 180 219 0 0 chr3 33926720 33926761 -184110397 - L2 LINE L2 -1 3312 3272 180 236 194 21 chr3 33926780 33926924 -184110234 - L2 LINE L2 -124 3189 3021 1400 263 51 99 chr3 33927006 33927185 -184109973 - L2 LINE L2 -435 2879 2693 1048 168 91 0 chr3 33927185 33927382 -184109776 - MER20 DNA MER1_type -4 215 1 1400 263 51 99 chr3 33927382 33927524 -184109634 - L2 LINE L2 -621 2693 2546 1875 173 0 13 chr3 33927524 33927831 -184109327 + AluJb SINE Alu 1 303 -9 1400 263 51 99 chr3 33927831 33928383 -184108775 - L2 LINE L2 -768 2546 2047 633 247 259 13 chr3 33929325 33929641 -184107517 - LTR33 LTR ERVL -14 507 114 1084 247 25 4 chr3 33930824 33931067 -184106091 + MIR SINE MIR 13 260 -2 216 0 0 0 chr3 33932001 33932025 -184105133 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 389 187 13 0 chr3 33932763 33932838 -184104320 - MIR3 SINE MIR -17 191 116 232 329 47 0 chr3 33934364 33934449 -184102709 + MIR SINE MIR 52 140 -68 194 289 58 0 chr3 33934642 33934694 -184102464 - L2 LINE L2 -77 3195 3141 460 231 42 28 chr3 33934726 33934869 -184102289 + MER104 DNA Tc2 32 176 -4 750 254 100 17 chr3 33936315 33936555 -184100603 + MIR SINE MIR 2 261 -1 958 174 11 58 chr3 33936673 33936863 -184100295 + MER5A DNA MER1_type 7 187 -2 2321 95 0 7 chr3 33937558 33937862 -184099296 + AluSx SINE Alu 1 302 -10 223 296 122 41 chr3 33938139 33938237 -184098921 - MIR SINE MIR -63 145 40 378 185 0 49 chr3 33938513 33938594 -184098564 + MER3 DNA MER1_type 5 81 -128 30 18 0 54 chr3 33938594 33938630 -184098528 + AT_rich Low_complexity Low_complexity 1 35 -18 2359 87 0 7 chr3 33938630 33938929 -184098229 + AluSq SINE Alu 1 297 -16 30 18 0 54 chr3 33938929 33938948 -184098210 + AT_rich Low_complexity Low_complexity 35 53 0 267 237 17 0 chr3 33939251 33939310 -184097848 + CT-rich Low_complexity Low_complexity 2 61 0 24 0 0 0 chr3 33940622 33940646 -184096512 + AT_rich Low_complexity Low_complexity 1 24 0 282 226 0 0 chr3 33940995 33941057 -184096101 + MLT1K LTR MaLR 506 567 -21 304 313 100 51 chr3 33941069 33941574 -184095584 - L2 LINE L2 -128 3144 2566 562 228 48 18 chr3 33944383 33944550 -184092608 + MIR SINE MIR 66 237 -25 223 441 26 7 chr3 33944626 33944778 -184092380 - L2 LINE L2 0 3272 3118 903 182 0 0 chr3 33945038 33945192 -184091966 + MLT1A1 LTR MaLR 1 154 -211 473 179 0 12 chr3 33945196 33945280 -184091878 + FLAM_A SINE Alu 1 83 -59 1051 165 37 0 chr3 33945302 33945490 -184091668 + MLT1A1 LTR MaLR 170 364 -1 220 259 0 0 chr3 33945767 33945821 -184091337 - L2 LINE L2 -10 3303 3250 16697 164 31 10 chr3 33945889 33952612 -184084546 - L1PB1 LINE L1 -2 6865 3 248 336 129 9 chr3 33952792 33952908 -184084250 + MIR3 SINE MIR 76 205 -3 236 310 108 0 chr3 33953988 33954117 -184083041 - MIR SINE MIR -118 144 2 280 293 18 93 chr3 33954376 33954656 -184082502 + MLT1J LTR MaLR 99 357 -154 597 272 17 64 chr3 33954905 33955140 -184082018 + MIR SINE MIR 39 262 0 221 118 0 39 chr3 33955906 33955957 -184081201 + (TAAAAA)n Simple_repeat Simple_repeat 5 53 0 532 282 67 29 chr3 33956529 33956816 -184080342 + L1ME LINE L1 749 1066 -5004 2174 118 7 3 chr3 33956816 33957120 -184080038 - AluSx SINE Alu -7 305 1 532 282 67 29 chr3 33957120 33957269 -184079889 + L1ME LINE L1 1066 1208 -4862 5768 79 8 15 chr3 33957340 33957927 -184079231 + L1MA1 LINE L1 5486 6068 -234 2233 105 7 0 chr3 33957927 33958223 -184078935 + AluSg SINE Alu 1 298 -12 5768 79 8 15 chr3 33958223 33958454 -184078704 + L1MA1 LINE L1 6068 6299 -3 198 0 0 0 chr3 33958931 33958953 -184078205 + (A)n Simple_repeat Simple_repeat 1 22 0 190 207 103 35 chr3 33959636 33959694 -184077464 - L2 LINE L2 -14 3258 3197 816 144 0 0 chr3 33960281 33960399 -184076759 + FLAM_C SINE Alu 1 118 -25 694 230 94 0 chr3 33960646 33960837 -184076321 - MER3 DNA MER1_type 0 209 1 1866 183 20 50 chr3 33961366 33961766 -184075392 - MLT1B LTR MaLR 0 390 3 1053 216 44 20 chr3 33962875 33963171 -184073987 + LTR16C LTR ERVL 187 489 -2 1572 129 276 18 chr3 33963259 33963599 -184073559 - MSTA LTR MaLR 0 428 1 207 191 0 24 chr3 33963781 33963798 -184073360 + (CAA)n Simple_repeat Simple_repeat 2 18 -24 2121 116 0 0 chr3 33963798 33964082 -184073076 + AluSg SINE Alu 1 284 -26 207 191 0 24 chr3 33964082 33964106 -184073052 + (CAA)n Simple_repeat Simple_repeat 18 42 0 454 266 0 24 chr3 33965738 33965862 -184071296 - MER63A DNA MER1_type -36 174 54 1622 239 173 9 chr3 33966054 33966725 -184070433 - MER20B DNA MER1_type 0 784 4 540 200 57 91 chr3 33967644 33967782 -184069376 - L1ME3A LINE L1 0 6170 6042 2338 98 3 16 chr3 33967782 33968099 -184069059 + AluSp SINE Alu 1 313 0 540 200 57 91 chr3 33968099 33968190 -184068968 - L1ME3A LINE L1 -128 6042 5949 1820 227 25 57 chr3 33968190 33968830 -184068328 - L1ME3A LINE L1 -183 5987 5371 2910 212 29 60 chr3 33968934 33969897 -184067261 - L1ME1 LINE L1 -5 6161 5254 2094 102 0 0 chr3 33969897 33970162 -184066996 - AluSq SINE Alu -24 289 25 2910 212 29 60 chr3 33970162 33970520 -184066638 - L1ME1 LINE L1 -912 5254 4887 413 327 133 41 chr3 33970839 33971154 -184066004 - L2 LINE L2 0 3313 2970 1562 186 36 25 chr3 33971154 33971434 -184065724 + AluJb SINE Alu 1 283 -29 820 209 71 33 chr3 33971587 33971798 -184065360 - MER58A DNA MER1_type -5 219 1 2095 115 70 48 chr3 33972401 33972757 -184064401 + THE1B LTR MaLR 1 364 0 872 246 126 39 chr3 33972863 33973277 -184063881 - MLT1J LTR MaLR -40 471 22 280 283 29 102 chr3 33973412 33973617 -184063541 - MIR SINE MIR -60 202 13 729 216 196 4 chr3 33973649 33973904 -184063254 - MER31B LTR ERV1 0 485 180 1055 241 48 58 chr3 33973926 33974400 -184062758 - MER39 LTR ERV1 -20 687 4 599 196 19 32 chr3 33974405 33974563 -184062595 - MER31B LTR ERV1 -310 156 1 180 111 0 0 chr3 33975132 33975159 -184061999 + (TG)n Simple_repeat Simple_repeat 2 28 0 374 258 0 19 chr3 33975757 33975912 -184061246 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 2087 97 37 10 chr3 33976447 33976747 -184060411 - AluSg SINE Alu -2 308 1 796 246 98 5 chr3 33976754 33976957 -184060201 - MIR SINE MIR -39 223 2 716 167 39 26 chr3 33976994 33977150 -184060008 + MER3 DNA MER1_type 5 162 -47 1050 215 18 5 chr3 33977936 33978155 -184059003 + MER58A DNA MER1_type 1 222 -2 384 340 61 21 chr3 33978171 33978522 -184058636 + L1MC4a LINE L1 5540 5790 -331 209 302 63 0 chr3 33978588 33978651 -184058507 + L2 LINE L2 3244 3310 -3 320 204 129 21 chr3 33982219 33982312 -184054846 + MIR SINE MIR 44 146 -62 816 235 40 10 chr3 33982350 33982550 -184054608 - MIR SINE MIR -51 211 6 180 0 0 0 chr3 33986032 33986052 -184051106 + (T)n Simple_repeat Simple_repeat 1 20 0 2547 74 0 3 chr3 33989574 33989884 -184047274 - AluSc SINE Alu 0 309 1 217 195 143 13 chr3 33991978 33992055 -184045103 + MIR SINE MIR 120 206 -56 236 239 141 43 chr3 33992344 33992436 -184044722 + MARNA DNA Mariner 75 175 -411 354 336 32 24 chr3 33992454 33992579 -184044579 - L2 LINE L2 -7 3265 3140 232 284 27 0 chr3 33992660 33992734 -184044424 - MARNA DNA Mariner -259 327 252 580 303 166 14 chr3 33992967 33993383 -184043775 - MLT1H1 LTR MaLR -2 553 75 302 184 103 46 chr3 33993576 33993663 -184043495 - MIR SINE MIR -71 191 100 503 161 154 74 chr3 33993920 33994017 -184043141 - MER5A DNA MER1_type -4 185 68 2327 80 23 0 chr3 33994017 33994316 -184042842 - AluSp SINE Alu -7 306 1 503 161 154 74 chr3 33994316 33994380 -184042778 - MER5A DNA MER1_type -121 68 11 778 266 138 7 chr3 33995865 33996147 -184041011 + MER5C DNA MER1_type 4 322 -2 216 0 0 0 chr3 33997326 33997350 -184039808 + (T)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr3 33997431 33997454 -184039704 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 324 0 0 0 chr3 33997453 33997489 -184039669 + (GA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 33997803 33997824 -184039334 + AT_rich Low_complexity Low_complexity 1 21 0 550 276 8 0 chr3 33997876 33998003 -184039155 - MER5B DNA MER1_type -50 128 1 187 308 146 31 chr3 33998011 33998141 -184039017 + L2 LINE L2 3168 3312 -1 483 255 77 48 chr3 33998771 33998979 -184038179 + L1ME4a LINE L1 5495 5708 -413 270 281 148 32 chr3 33998982 33999199 -184037959 + L1ME4a LINE L1 5822 6063 -58 555 361 73 31 chr3 33999717 34000501 -184036657 - L2 LINE L2 -8 3305 2486 411 292 169 13 chr3 34000909 34001063 -184036095 - MER5A DNA MER1_type -3 186 9 2162 92 4 0 chr3 34001198 34001505 -184035653 - AluSx SINE Alu 0 319 12 237 319 58 43 chr3 34001593 34001731 -184035427 + MIR SINE MIR 42 181 -81 1851 162 13 3 chr3 34002381 34002689 -184034469 + AluSq SINE Alu 1 311 -2 1806 258 63 0 chr3 34003336 34003767 -184033391 - MLT1H LTR MaLR 0 549 92 932 94 0 16 chr3 34003814 34003941 -184033217 - FLAM_C SINE Alu -18 125 1 180 309 0 0 chr3 34004094 34004136 -184033022 + L2 LINE L2 3248 3289 -24 2406 85 0 0 chr3 34004151 34004444 -184032714 + AluSc SINE Alu 1 293 -16 34 93 0 0 chr3 34005415 34005512 -184031646 + AT_rich Low_complexity Low_complexity 1 97 0 419 244 98 55 chr3 34005669 34005923 -184031235 - L1ME LINE L1 -297 5824 5560 592 244 155 16 chr3 34006721 34006914 -184030244 + MIR SINE MIR 20 239 -23 184 256 93 0 chr3 34006880 34006923 -184030235 + L2 LINE L2 3251 3297 -16 * 198 0 0 0 chr3 34006947 34006969 -184030189 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2239 68 3 31 chr3 34006971 34007264 -184029894 - AluSp SINE Alu -28 285 1 1084 215 20 0 chr3 34007463 34007658 -184029500 - MER58A DNA MER1_type 0 224 26 381 289 13 15 chr3 34008001 34008180 -184028978 - MLT1H LTR MaLR 0 549 310 1025 322 31 14 chr3 34010051 34010411 -184026747 - MLT1I LTR MaLR -4 405 40 638 316 0 5 chr3 34010990 34011186 -184025972 + L2 LINE L2 3119 3313 0 1940 250 68 77 chr3 34011923 34012523 -184024635 - MLT1G LTR MaLR 0 590 1 860 103 13 77 chr3 34014100 34014255 -184022903 + AluSg/x SINE Alu 150 294 -16 2120 116 0 7 chr3 34014269 34014562 -184022596 + AluSx SINE Alu 1 291 -21 774 237 34 0 chr3 34015198 34015386 -184021772 + MER58B DNA MER1_type 139 338 -3 2610 55 0 0 chr3 34015408 34015718 -184021440 + AluY SINE Alu 1 310 -1 399 224 21 0 chr3 34015789 34015895 -184021263 + MIR SINE MIR 36 147 -76 193 283 0 0 chr3 34016120 34016166 -184020992 - MIR SINE MIR -5 257 212 242 277 75 43 chr3 34016305 34016399 -184020759 + L2 LINE L2 3163 3259 -13 902 254 24 27 chr3 34016836 34017091 -184020067 - MIR SINE MIR 0 262 3 2280 116 3 0 chr3 34017350 34017653 -184019505 - AluSp SINE Alu -9 304 1 441 280 8 17 chr3 34018688 34018806 -184018352 - MLT1H LTR MaLR -376 173 57 460 215 84 28 chr3 34018899 34019006 -184018152 - L2 LINE L2 -2 3311 3199 225 256 147 62 chr3 34019160 34019289 -184017869 + MIR3 SINE MIR 8 147 -61 216 0 0 0 chr3 34019485 34019509 -184017649 + (T)n Simple_repeat Simple_repeat 1 24 0 543 259 21 0 chr3 34019515 34019658 -184017500 - MIR SINE MIR -67 195 50 228 204 0 0 chr3 34020758 34020802 -184016356 - L2 LINE L2 -2 3270 3227 186 198 19 160 chr3 34020829 34020901 -184016257 + L2 LINE L2 3223 3277 -36 2008 194 82 45 chr3 34020901 34021437 -184015721 - LTR38 LTR ERV1 0 556 1 186 198 19 160 chr3 34021437 34021470 -184015688 + L2 LINE L2 3277 3313 0 180 356 35 0 chr3 34021707 34021794 -184015364 - L2 LINE L2 -230 3042 2953 319 269 146 87 chr3 34021949 34022224 -184014934 + L2 LINE L2 3011 3301 -12 391 210 29 123 chr3 34023618 34023756 -184013402 - MLT1J1 LTR MaLR -321 125 1 235 203 25 101 chr3 34023764 34023843 -184013315 - MIR SINE MIR -71 191 119 28 0 0 0 chr3 34025113 34025141 -184012017 + AT_rich Low_complexity Low_complexity 1 28 0 2037 109 27 24 chr3 34025526 34025820 -184011338 - AluSx SINE Alu -17 295 1 269 294 0 101 chr3 34025825 34025944 -184011214 + MIR SINE MIR 156 262 0 29 28 0 0 chr3 34026046 34026082 -184011076 + AT_rich Low_complexity Low_complexity 1 36 0 1186 176 32 23 chr3 34026353 34026569 -184010589 - MER20 DNA MER1_type 0 219 2 2046 102 3 38 chr3 34026573 34026886 -184010272 + AluSq SINE Alu 1 302 -11 339 243 232 22 chr3 34026960 34027145 -184010013 - MIR SINE MIR -8 254 31 2036 111 7 7 chr3 34028674 34028963 -184008195 - AluSx SINE Alu -21 291 3 2082 135 3 3 chr3 34029099 34029403 -184007755 + AluSx SINE Alu 1 304 -8 467 273 100 7 chr3 34030132 34030282 -184006876 + MIR SINE MIR 98 261 -1 29 0 0 0 chr3 34030383 34030412 -184006746 + AT_rich Low_complexity Low_complexity 1 29 0 2155 115 3 0 chr3 34030413 34030699 -184006459 - AluSx SINE Alu -25 287 1 955 142 0 7 chr3 34030713 34030868 -184006290 - AluSg/x SINE Alu -7 303 150 215 288 68 0 chr3 34031226 34031299 -184005859 - L2 LINE L2 -7 3265 3188 1600 194 20 3 chr3 34031927 34032221 -184004937 + AluJb SINE Alu 7 305 -7 2250 87 0 26 chr3 34032242 34032551 -184004607 + AluSg SINE Alu 1 301 -9 22 0 0 0 chr3 34032586 34032608 -184004550 + AT_rich Low_complexity Low_complexity 1 22 0 280 288 117 0 chr3 34033551 34033662 -184003496 + L2 LINE L2 3140 3263 -9 877 193 24 70 chr3 34033707 34033849 -184003309 + MER3 DNA MER1_type 1 131 -78 2300 93 0 7 chr3 34033849 34034185 -184002973 - AluSg SINE Alu 0 310 1 877 193 24 70 chr3 34034185 34034255 -184002903 + MER3 DNA MER1_type 131 203 -6 1064 118 12 17 chr3 34034773 34035986 -184001172 - HSATII Satellite Satellite -9 1207 1 878 116 5 0 chr3 34036009 34036448 -184000710 - HSATII Satellite Satellite -9 441 1 1802 163 28 0 chr3 34036991 34037279 -183999879 - AluJb SINE Alu -16 296 1 923 112 19 14 chr3 34037706 34038402 -183998756 - HSATII Satellite Satellite 0 699 1 899 130 3 17 chr3 34038432 34038782 -183998376 - HSATII Satellite Satellite -148 345 1 907 105 13 19 chr3 34038809 34039127 -183998031 - HSATII Satellite Satellite 0 316 1 724 126 19 19 chr3 34039152 34039311 -183997847 - HSATII Satellite Satellite 0 170 12 789 155 2 0 chr3 34039468 34039842 -183997316 + (GAATG)n Satellite Satellite 1 374 0 1092 101 0 0 chr3 34039854 34040032 -183997126 + (GAATG)n Satellite Satellite 2 179 0 1119 125 3 3 chr3 34040060 34040378 -183996780 + (GAATG)n Satellite Satellite 1 318 0 522 103 0 0 chr3 34040393 34040480 -183996678 + (GAATG)n Satellite Satellite 5 91 0 956 117 8 14 chr3 34040645 34041726 -183995432 - HSATII Satellite Satellite -31 1075 1 193 317 0 0 chr3 34042309 34042350 -183994808 + MIR SINE MIR 35 75 -187 309 237 13 13 chr3 34042494 34042570 -183994588 - MIR SINE MIR -60 202 127 704 216 95 0 chr3 34043058 34043206 -183993952 - MER5A DNA MER1_type -25 164 3 236 309 0 0 chr3 34043206 34043261 -183993897 - Charlie8 DNA MER1_type -2228 189 135 283 261 37 90 chr3 34043398 34043532 -183993626 - Charlie8 DNA MER1_type -2290 127 1 968 256 58 0 chr3 34044016 34044258 -183992900 - MIR SINE MIR 0 262 7 1260 156 51 78 chr3 34044629 34044708 -183992450 - MER33 DNA MER1_type -2261 324 244 2477 71 3 0 chr3 34044708 34045018 -183992140 - AluY SINE Alu 0 311 1 1260 156 51 78 chr3 34045018 34045271 -183991887 - MER33 DNA MER1_type -2341 244 1 21 71 0 0 chr3 34045683 34045725 -183991433 + AT_rich Low_complexity Low_complexity 1 42 0 1469 184 103 3 chr3 34046656 34046966 -183990192 + MER58B DNA MER1_type 1 341 0 220 266 94 16 chr3 34048676 34048740 -183988418 - L2 LINE L2 -3 3269 3201 24 67 0 0 chr3 34052873 34052918 -183984240 + AT_rich Low_complexity Low_complexity 1 45 0 767 171 17 97 chr3 34053757 34053828 -183983330 - MER45A DNA AcHobo -1405 176 101 1943 141 3 13 chr3 34053828 34054127 -183983031 + AluSq SINE Alu 1 296 -17 767 171 17 97 chr3 34054127 34054230 -183982928 - MER45A DNA AcHobo -1480 101 16 22 35 0 0 chr3 34055153 34055182 -183981976 + AT_rich Low_complexity Low_complexity 1 29 0 465 19 0 0 chr3 34056421 34056475 -183980683 + (CA)n Simple_repeat Simple_repeat 2 55 0 623 263 80 10 chr3 34057072 34057283 -183979875 - MIR SINE MIR 0 262 40 2240 70 11 3 chr3 34059066 34059376 -183977782 - AluSp SINE Alu 0 312 1 291 299 86 32 chr3 34059730 34059917 -183977241 - MIR3 SINE MIR -6 202 6 589 287 111 21 chr3 34060060 34060447 -183976711 - MER113 DNA MER1_type? -47 474 53 912 183 21 83 chr3 34061799 34062088 -183975070 - LTR37B LTR ERV1 0 468 198 319 267 29 9 chr3 34062146 34062251 -183974907 - LTR37B LTR ERV1 -293 175 69 1066 235 0 0 chr3 34062256 34062460 -183974698 + MER3 DNA MER1_type 6 209 0 275 263 13 0 chr3 34062460 34062529 -183974629 - LTR37B LTR ERV1 -392 76 7 2167 109 6 37 chr3 34062644 34062966 -183974192 - AluSx SINE Alu 0 312 1 268 280 20 70 chr3 34065021 34065121 -183972037 + MLT1L LTR MaLR 437 531 -84 411 318 31 51 chr3 34066001 34066196 -183970962 - MIR3 SINE MIR 0 208 18 1177 292 67 43 chr3 34066255 34066762 -183970396 - MLT1K LTR MaLR 0 588 70 679 235 22 123 chr3 34066903 34066958 -183970200 - MIR SINE MIR 0 262 203 2010 81 55 68 chr3 34066958 34067266 -183969892 - AluSq SINE Alu -9 304 1 679 235 22 123 chr3 34067266 34067478 -183969680 - MIR SINE MIR -59 203 22 1306 101 0 0 chr3 34068296 34068464 -183968694 + AluSg/x SINE Alu 139 306 -6 1684 170 0 33 chr3 34068511 34068817 -183968341 + AluJb SINE Alu 1 296 -16 824 245 13 0 chr3 34068822 34068977 -183968181 - MER58A DNA MER1_type 0 157 1 225 356 58 0 chr3 34069338 34069425 -183967733 + L2 LINE L2 3140 3231 -41 22 0 0 0 chr3 34071078 34071100 -183966058 + AT_rich Low_complexity Low_complexity 1 22 0 346 352 57 12 chr3 34071289 34071536 -183965622 + MIR SINE MIR 1 258 -4 232 224 0 0 chr3 34072330 34072379 -183964779 - MIR SINE MIR -139 123 75 2064 126 0 7 chr3 34072529 34072823 -183964335 + AluSx SINE Alu 1 292 -20 520 284 50 23 chr3 34072867 34073085 -183964073 - MER113 DNA MER1_type? 0 521 298 594 199 147 6 chr3 34073124 34073280 -183963878 - MER58A DNA MER1_type 0 224 47 2481 70 3 6 chr3 34073306 34073618 -183963540 - AluY SINE Alu 0 311 1 632 204 94 25 chr3 34073623 34073824 -183963334 - MER113 DNA MER1_type? -306 215 1 814 232 76 31 chr3 34074126 34074350 -183962808 + MIR SINE MIR 8 241 -21 187 336 93 21 chr3 34074686 34074826 -183962332 + L2 LINE L2 2827 2976 -337 1853 130 34 31 chr3 34075195 34075548 -183961610 + AluSg SINE Alu 1 354 0 225 0 0 0 chr3 34075849 34075874 -183961284 + (CA)n Simple_repeat Simple_repeat 2 26 0 427 210 92 8 chr3 34075874 34075993 -183961165 - MER104 DNA Tc2 -5 175 47 1994 238 66 29 chr3 34077420 34078012 -183959146 + L1ME3 LINE L1 5448 6061 -101 1980 175 0 0 chr3 34078805 34079114 -183958044 - AluSx SINE Alu -3 309 1 21 0 0 0 chr3 34079124 34079145 -183958013 + AT_rich Low_complexity Low_complexity 1 21 0 4376 187 39 19 chr3 34079471 34080355 -183956803 + L1MB7 LINE L1 5283 6183 -1 2264 234 70 37 chr3 34080977 34081725 -183955433 - L1ME2 LINE L1 -9 6155 5384 21 0 0 0 chr3 34081725 34081746 -183955412 + AT_rich Low_complexity Low_complexity 1 21 0 1208 179 61 5 chr3 34082176 34082388 -183954770 + MER58A DNA MER1_type 1 224 0 406 268 105 13 chr3 34082747 34082900 -183954258 - MARNA DNA Mariner -329 257 91 428 279 58 13 chr3 34083820 34083974 -183953184 + MIR3 SINE MIR 21 181 -27 281 237 0 0 chr3 34084245 34084304 -183952854 - MIR SINE MIR -114 148 90 232 326 21 42 chr3 34085622 34085766 -183951392 - MIR SINE MIR -67 141 3 350 147 15 0 chr3 34086783 34086851 -183950307 + CT-rich Low_complexity Low_complexity 3 71 0 2136 123 3 19 chr3 34086899 34087216 -183949942 - AluSx SINE Alu 0 312 1 670 257 38 105 chr3 34087701 34088121 -183949037 - L2 LINE L2 0 3313 2922 596 319 112 50 chr3 34088100 34088746 -183948412 - L2 LINE L2 -40 3232 2543 * 317 129 0 16 chr3 34088837 34088899 -183948259 + (TGGA)n Simple_repeat Simple_repeat 3 63 0 352 284 173 19 chr3 34089248 34089410 -183947748 - MER5A DNA MER1_type 0 189 3 377 222 158 103 chr3 34091257 34091676 -183945482 + L1ME1 LINE L1 5507 5948 -222 638 242 13 0 chr3 34091816 34091969 -183945189 + L1ME1 LINE L1 6010 6164 -2 27 0 0 0 chr3 34092006 34092033 -183945125 + AT_rich Low_complexity Low_complexity 1 27 0 187 340 31 0 chr3 34092090 34092187 -183944971 + L2 LINE L2 2734 2833 -481 2043 179 50 64 chr3 34092519 34093017 -183944141 - MLT1D LTR MaLR -10 495 5 955 257 147 47 chr3 34093132 34093533 -183943625 - LTR16C LTR ERVL -17 474 34 631 52 10 21 chr3 34093533 34093630 -183943528 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 186 103 0 0 chr3 34093637 34093666 -183943492 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 34093904 34093925 -183943233 + AT_rich Low_complexity Low_complexity 1 21 0 491 301 119 35 chr3 34096332 34096558 -183940600 + MIR SINE MIR 18 262 0 347 263 0 137 chr3 34097507 34097595 -183939563 + MIR SINE MIR 43 97 -165 2517 72 16 3 chr3 34097595 34097916 -183939242 - L1PA7 LINE L1 -1 6153 5829 347 263 0 137 chr3 34097916 34098002 -183939156 + MIR SINE MIR 97 193 -69 416 163 12 81 chr3 34098065 34098151 -183939007 + Tigger5 DNA MER2_type 2237 2316 -7 462 229 16 25 chr3 34098377 34098499 -183938659 - MIR SINE MIR -63 145 25 714 218 249 16 chr3 34100677 34100934 -183936224 + MER5C DNA MER1_type 2 318 -6 253 324 165 39 chr3 34101499 34101681 -183935477 - L3 LINE CR1 -222 1355 1151 285 217 0 0 chr3 34101717 34101800 -183935358 + T-rich Low_complexity Low_complexity 1 83 0 550 271 57 21 chr3 34101811 34102003 -183935155 - L3 LINE CR1 -441 1136 938 274 218 36 0 chr3 34102003 34102058 -183935100 + Tigger2 DNA MER2_type 1 57 -2661 1230 206 19 0 chr3 34102062 34102271 -183934887 - MER8 DNA MER2_type -26 213 1 1016 200 0 11 chr3 34103185 34103360 -183933798 + MER58A DNA MER1_type 1 173 -51 255 243 125 44 chr3 34103546 34103682 -183933476 + L2 LINE L2 3167 3313 0 221 294 0 0 chr3 34104162 34104213 -183932945 + polypurine Low_complexity Low_complexity 4 54 0 369 217 84 133 chr3 34104244 34104447 -183932711 + MER117 DNA MER1_type 2 194 -3 393 263 247 0 chr3 34104964 34105154 -183932004 - MIR SINE MIR -13 249 13 277 235 96 2 chr3 34105194 34105352 -183931806 + MER20 DNA MER1_type 11 205 -14 646 290 117 25 chr3 34106099 34106534 -183930624 + L1ME4a LINE L1 5631 6105 -16 1672 140 70 7 chr3 34107129 34107426 -183929732 - AluSx SINE Alu 0 314 1 742 270 120 54 chr3 34107933 34108645 -183928513 - L2 LINE L2 -2 3311 2552 22 0 0 0 chr3 34108965 34108987 -183928171 + AT_rich Low_complexity Low_complexity 1 22 0 288 232 73 12 chr3 34109039 34109121 -183928037 - L1ME4a LINE L1 -239 5882 5796 231 146 0 0 chr3 34109895 34109936 -183927222 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 180 0 0 0 chr3 34110822 34110842 -183926316 + (A)n Simple_repeat Simple_repeat 1 20 0 600 336 133 18 chr3 34111518 34111908 -183925250 + L3 LINE CR1 747 1181 -396 253 308 85 27 chr3 34111962 34112115 -183925043 - MIR SINE MIR -79 129 22 271 118 0 39 chr3 34112148 34112199 -183924959 + MIR3 SINE MIR 155 203 -5 1982 151 21 78 chr3 34112469 34112798 -183924360 - MLT1A1 LTR MaLR 0 365 60 2496 103 103 0 chr3 34112798 34113157 -183924001 - L1PA10 LINE L1 -5 6163 5768 1982 151 21 78 chr3 34113157 34113212 -183923946 - MLT1A1 LTR MaLR -305 60 3 312 309 135 35 chr3 34113573 34113855 -183923303 - L2 LINE L2 -787 2527 2218 392 266 87 17 chr3 34114922 34115095 -183922063 + L1MC5 LINE L1 7727 7911 -50 194 309 0 0 chr3 34116016 34116071 -183921087 + L2 LINE L2 2927 2981 -332 970 229 23 14 chr3 34116548 34116766 -183920392 + MER58A DNA MER1_type 5 224 0 214 268 85 12 chr3 34116768 34116850 -183920308 + L2 LINE L2 3150 3237 -35 2544 164 33 19 chr3 34116863 34117284 -183919874 - MSTC LTR MaLR -1 427 1 183 80 0 0 chr3 34117314 34117339 -183919819 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 905 274 62 15 chr3 34117383 34117723 -183919435 + L2 LINE L2 2946 3301 -12 503 271 90 32 chr3 34118740 34118928 -183918230 + MIR SINE MIR 31 229 -33 414 0 0 0 chr3 34119322 34119368 -183917790 + (CA)n Simple_repeat Simple_repeat 1 46 0 277 284 69 20 chr3 34119372 34119474 -183917684 + L2 LINE L2 3205 3311 -2 229 361 0 0 chr3 34121404 34121487 -183915671 - L2 LINE L2 -3 3310 3228 192 368 125 14 chr3 34121670 34121814 -183915344 + L2 LINE L2 3140 3299 -14 482 250 0 11 chr3 34121834 34122014 -183915144 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 195 167 0 0 chr3 34122043 34122085 -183915073 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 100 0 0 chr3 34122135 34122165 -183914993 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 186 222 0 0 chr3 34122881 34122935 -183914223 + CT-rich Low_complexity Low_complexity 4 57 0 413 324 7 35 chr3 34123210 34123352 -183913806 - MIR SINE MIR -114 148 11 413 213 191 100 chr3 34123580 34123810 -183913348 - MLT1H LTR MaLR -13 536 286 190 275 134 74 chr3 34124322 34124471 -183912687 + L3b LINE CR1 1316 1473 -110 223 353 49 25 chr3 34126813 34126935 -183910223 - L2 LINE L2 -6 3266 3142 645 282 18 0 chr3 34127354 34127518 -183909640 + MIR SINE MIR 17 190 -63 308 111 0 0 chr3 34127735 34127780 -183909378 + L2 LINE L2 3269 3313 0 209 322 35 23 chr3 34128065 34128152 -183909006 - MIR SINE MIR -86 122 35 182 257 57 29 chr3 34129070 34129140 -183908018 + MIR SINE MIR 114 185 -77 2377 210 33 24 chr3 34129333 34129913 -183907245 - L1MB7 LINE L1 -20 6164 5580 397 235 78 65 chr3 34130457 34130610 -183906548 + MIR SINE MIR 72 226 -36 203 333 0 15 chr3 34130682 34130748 -183906410 + CT-rich Low_complexity Low_complexity 2 66 0 186 197 45 15 chr3 34131168 34131234 -183905924 - L2 LINE L2 -24 3248 3181 21 36 0 0 chr3 34131334 34131362 -183905796 + AT_rich Low_complexity Low_complexity 1 28 0 1733 153 10 24 chr3 34132754 34133049 -183904109 + AluJo SINE Alu 6 296 -16 255 103 0 0 chr3 34133499 34133538 -183903620 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1071 254 47 0 chr3 34133837 34134050 -183903108 - MER58A DNA MER1_type -1 223 1 21 0 0 0 chr3 34134630 34134651 -183902507 + AT_rich Low_complexity Low_complexity 1 21 0 267 220 9 18 chr3 34135681 34135790 -183901368 + (TGGA)n Simple_repeat Simple_repeat 3 110 0 207 100 0 0 chr3 34135840 34135870 -183901288 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 186 222 0 0 chr3 34136586 34136640 -183900518 + CT-rich Low_complexity Low_complexity 4 57 0 341 345 7 35 chr3 34136915 34137057 -183900101 - MIR SINE MIR -114 148 11 473 201 154 69 chr3 34137271 34137516 -183899642 - MLT1H LTR MaLR 0 536 286 200 269 134 74 chr3 34138028 34138177 -183898981 + L3b LINE CR1 1316 1473 -110 223 353 49 25 chr3 34140518 34140640 -183896518 - L2 LINE L2 -6 3266 3142 645 282 18 0 chr3 34141059 34141223 -183895935 + MIR SINE MIR 17 190 -63 294 111 0 0 chr3 34141440 34141485 -183895673 + L2 LINE L2 3269 3313 0 202 245 20 0 chr3 34141808 34141857 -183895301 - MIR SINE MIR -124 84 35 2448 207 33 22 chr3 34143042 34143621 -183893537 - L1MB7 LINE L1 -20 6164 5580 353 235 78 65 chr3 34144168 34144321 -183892837 + MIR SINE MIR 72 226 -36 203 333 0 15 chr3 34144393 34144459 -183892699 + CT-rich Low_complexity Low_complexity 2 66 0 21 36 0 0 chr3 34145046 34145074 -183892084 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr3 34145881 34145921 -183891237 + (CA)n Simple_repeat Simple_repeat 2 41 0 237 288 120 8 chr3 34146057 34146182 -183890976 - L2 LINE L2 0 3313 3175 189 244 0 0 chr3 34146617 34146658 -183890500 + L2 LINE L2 3228 3268 -4 414 220 240 0 chr3 34147140 34147290 -183889868 - MER5A DNA MER1_type 0 189 4 377 284 118 6 chr3 34147547 34147716 -183889442 + MIR SINE MIR 21 208 -54 799 299 20 4 chr3 34148221 34148465 -183888693 - MIR SINE MIR -11 251 4 658 223 139 14 chr3 34148962 34149177 -183887981 + LTR16C LTR ERVL 231 472 -19 420 318 52 0 chr3 34150123 34150296 -183886862 + MIR SINE MIR 52 233 -29 284 258 54 11 chr3 34150809 34150902 -183886256 + MIR SINE MIR 34 130 -78 1617 147 130 7 chr3 34150938 34151238 -183885920 - MER1B DNA MER1_type 0 337 1 1510 178 82 79 chr3 34151286 34151752 -183885406 - MLT1C LTR MaLR 0 467 1 504 311 23 14 chr3 34153067 34153286 -183883872 + MIR SINE MIR 37 257 -5 398 240 87 59 chr3 34154849 34155103 -183882055 - L1MC5 LINE L1 -192 7769 7509 1656 229 28 16 chr3 34155111 34155534 -183881624 - L1ME1 LINE L1 -5 6161 5734 1105 230 87 38 chr3 34155531 34155957 -183881201 - L1MC5 LINE L1 -442 7519 7073 * 2246 105 0 3 chr3 34155992 34156288 -183880870 + AluSg SINE Alu 1 295 -15 283 101 14 87 chr3 34157453 34157493 -183879665 - MIR SINE MIR -115 147 112 1449 199 70 22 chr3 34157493 34157850 -183879308 + MLT1A2 LTR MaLR 1 374 0 283 101 14 87 chr3 34157850 34157878 -183879280 - MIR SINE MIR -150 112 84 310 282 80 37 chr3 34158696 34158859 -183878299 + MIR SINE MIR 84 253 -9 208 185 37 19 chr3 34160023 34160077 -183877081 + CT-rich Low_complexity Low_complexity 2 56 0 378 269 126 85 chr3 34160077 34160667 -183876491 - L2 LINE L2 -5 3308 2684 805 262 34 0 chr3 34160925 34161158 -183876000 + MIR SINE MIR 22 262 0 211 235 0 0 chr3 34161182 34161233 -183875925 - MIR SINE MIR -103 159 109 398 280 0 0 chr3 34161707 34161807 -183875351 - MIR SINE MIR -141 121 22 341 264 86 43 chr3 34162018 34162158 -183875000 + L2 LINE L2 2909 3054 -218 742 259 93 5 chr3 34162883 34163099 -183874059 + MIR SINE MIR 8 242 -20 838 211 78 16 chr3 34163190 34163446 -183873712 + MER33 DNA MER1_type 1 272 -52 436 284 30 37 chr3 34163858 34163992 -183873166 - L2 LINE L2 -1 3312 3180 1107 240 58 27 chr3 34164000 34164398 -183872760 + L1ME3 LINE L1 5738 6143 -21 2737 194 30 13 chr3 34164398 34164955 -183872203 - MLT1F1 LTR MaLR 0 567 1 1107 240 58 27 chr3 34164955 34164976 -183872182 + L1ME3 LINE L1 6143 6162 -2 427 296 155 30 chr3 34165060 34165457 -183871701 - L2 LINE L2 -276 3037 2585 1540 155 8 4 chr3 34166436 34166687 -183870471 - AluSx SINE Alu -28 284 33 283 303 129 19 chr3 34166752 34166907 -183870251 + MIR3 SINE MIR 20 191 -17 451 294 89 24 chr3 34168802 34169026 -183868132 + MIR SINE MIR 14 259 -3 381 290 19 9 chr3 34169029 34169136 -183868022 + L2 LINE L2 3153 3260 -12 730 216 122 0 chr3 34171496 34171677 -183865481 + MER3 DNA MER1_type 2 204 -5 22 0 0 0 chr3 34173810 34173832 -183863326 + AT_rich Low_complexity Low_complexity 1 22 0 278 176 99 12 chr3 34175778 34175938 -183861220 - MER5C DNA MER1_type -42 282 45 237 300 0 0 chr3 34176763 34176823 -183860335 + MIR3 SINE MIR 101 160 -48 2116 100 24 7 chr3 34177235 34177524 -183859634 + AluSq SINE Alu 1 294 -19 2144 134 0 3 chr3 34178013 34178326 -183858832 + AluSx SINE Alu 1 312 0 2080 144 0 13 chr3 34179129 34179442 -183857716 - AluSx SINE Alu -3 309 1 766 309 81 18 chr3 34179530 34179802 -183857356 - LTR16C LTR ERVL -41 450 162 21 0 0 0 chr3 34182085 34182106 -183855052 + AT_rich Low_complexity Low_complexity 1 21 0 1004 254 47 0 chr3 34182686 34182899 -183854259 + MER58A DNA MER1_type 1 223 -1 255 103 0 0 chr3 34183198 34183237 -183853921 + (CAT)n Simple_repeat Simple_repeat 2 40 0 1747 153 10 24 chr3 34183687 34183982 -183853176 - AluJo SINE Alu -16 296 6 811 107 156 0 chr3 34185977 34186099 -183851059 + AluSp/q SINE Alu 157 297 -16 253 252 36 54 chr3 34186311 34186422 -183850736 - L2 LINE L2 -218 3054 2946 395 351 153 8 chr3 34186857 34187125 -183850033 - L2 LINE L2 -856 2458 2152 180 0 0 0 chr3 34187800 34187820 -183849338 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2437 74 3 6 chr3 34187830 34188141 -183849017 - AluY SINE Alu -1 310 1 23 33 0 0 chr3 34188341 34188371 -183848787 + AT_rich Low_complexity Low_complexity 1 30 0 217 253 13 51 chr3 34188815 34188894 -183848264 + MIR3 SINE MIR 123 198 -10 181 311 100 11 chr3 34189252 34189342 -183847816 + MIR SINE MIR 1 98 -164 1968 155 17 3 chr3 34189349 34189646 -183847512 + AluJb SINE Alu 1 301 -11 207 220 0 0 chr3 34189700 34189750 -183847408 - MIR SINE MIR -115 147 98 292 323 81 19 chr3 34189766 34189927 -183847231 + MIR SINE MIR 90 260 -2 26 30 0 0 chr3 34190245 34190278 -183846880 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 34190657 34190679 -183846479 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 34191391 34191413 -183845745 + AT_rich Low_complexity Low_complexity 1 22 0 337 246 0 0 chr3 34193749 34193810 -183843348 + tRNA-Lys-AAA tRNA tRNA 5 65 -11 1801 154 14 3 chr3 34197265 34197558 -183839600 - AluJb SINE Alu -16 296 1 2187 126 0 0 chr3 34197722 34198031 -183839127 + AluSx SINE Alu 1 309 -3 201 324 15 0 chr3 34198171 34198239 -183838919 + L2 LINE L2 3241 3309 -4 1991 101 10 7 chr3 34198655 34198943 -183838215 - AluSq SINE Alu -11 302 14 997 113 0 0 chr3 34198960 34199093 -183838065 - AluSp SINE Alu -180 133 1 264 365 122 17 chr3 34201255 34201436 -183835722 + MIR SINE MIR 12 211 -51 969 61 88 218 chr3 34201467 34201728 -183835430 - MER30 DNA MER1_type 0 230 4 30 27 0 0 chr3 34202908 34202945 -183834213 + AT_rich Low_complexity Low_complexity 1 37 0 1254 198 69 116 chr3 34203384 34203802 -183833356 + L1MC5 LINE L1 7233 7669 -292 1598 165 62 7 chr3 34203802 34204093 -183833065 + AluSx SINE Alu 1 307 -5 1254 198 69 116 chr3 34204093 34204208 -183832950 + L1MC5 LINE L1 7669 7647 -314 1864 151 3 3 chr3 34204208 34204492 -183832666 + AluJb SINE Alu 1 284 -28 1254 198 69 116 chr3 34204492 34204678 -183832480 + L1MC5 LINE L1 7646 7839 -122 23 0 0 0 chr3 34206130 34206153 -183831005 + AT_rich Low_complexity Low_complexity 1 23 0 219 294 0 0 chr3 34206274 34206325 -183830833 + (TA)n Simple_repeat Simple_repeat 1 51 0 22 35 0 0 chr3 34206616 34206645 -183830513 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 34207233 34207255 -183829903 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr3 34208982 34209009 -183828149 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1580 253 106 28 chr3 34209054 34209583 -183827575 - MER21B LTR ERV1 -105 758 189 22 70 0 0 chr3 34209647 34209690 -183827468 + AT_rich Low_complexity Low_complexity 1 43 0 1424 276 68 72 chr3 34210287 34211804 -183825354 + L1MCa LINE L1 46 1457 -4851 297 218 64 18 chr3 34211803 34211913 -183825245 + L1MCa LINE L1 2543 2657 -3907 * 1048 164 16 6 chr3 34212420 34212603 -183824555 - MER2 DNA MER2_type -139 206 22 26 50 0 0 chr3 34212802 34212842 -183824316 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr3 34212867 34212896 -183824262 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3 34213701 34213725 -183823433 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 333 0 0 0 chr3 34214328 34214365 -183822793 + (A)n Simple_repeat Simple_repeat 1 37 0 342 0 0 0 chr3 34215437 34215475 -183821683 + (A)n Simple_repeat Simple_repeat 1 38 0 261 238 79 101 chr3 34216089 34216316 -183820842 + L1ME4a LINE L1 5724 5945 -176 2260 94 3 0 chr3 34216430 34216728 -183820430 - AluSg SINE Alu -11 299 1 1950 123 23 10 chr3 34217875 34218059 -183819099 - AluJb SINE Alu -7 305 114 212 0 36 0 chr3 34218059 34218087 -183819071 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1950 123 23 10 chr3 34218087 34218203 -183818955 - AluJb SINE Alu -198 114 1 534 277 137 12 chr3 34221248 34221461 -183815697 + MIR SINE MIR 4 238 -24 1876 123 11 0 chr3 34221541 34221810 -183815348 + AluSx SINE Alu 3 274 -38 2138 80 3 51 chr3 34221913 34222226 -183814932 - AluY SINE Alu -13 298 1 2104 118 0 35 chr3 34222872 34223185 -183813973 - AluSx SINE Alu -8 304 3 27 73 0 0 chr3 34224002 34224057 -183813101 + AT_rich Low_complexity Low_complexity 1 55 0 308 254 204 21 chr3 34224957 34225099 -183812059 + L1MB2 LINE L1 413 580 -5723 3092 235 26 38 chr3 34225507 34225691 -183811467 + L1MB2 LINE L1 801 986 -5317 1763 164 3 20 chr3 34225691 34225996 -183811162 + AluJb SINE Alu 1 300 -12 3092 235 26 38 chr3 34225996 34226916 -183810242 + L1MB2 LINE L1 986 1787 -4516 9008 112 9 0 chr3 34226945 34228229 -183808929 - HSMAR2 DNA Mariner 0 1302 7 11044 205 59 16 chr3 34228349 34228700 -183808458 + L1MB2 LINE L1 2030 2364 -4043 2064 125 7 3 chr3 34228700 34228996 -183808162 + AluSx SINE Alu 1 297 -15 11044 205 59 16 chr3 34228996 34230518 -183806640 + L1MB2 LINE L1 2364 3818 -2589 1455 168 3 107 chr3 34230518 34230845 -183806313 - AluJb SINE Alu -9 293 1 11044 205 59 16 chr3 34230845 34233157 -183804001 + L1MB2 LINE L1 3818 6406 -1 488 196 18 36 chr3 34233436 34233548 -183803610 + FLAM_A SINE Alu 4 113 -29 239 79 26 0 chr3 34233552 34233590 -183803568 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2146 72 3 14 chr3 34234895 34235185 -183801973 + AluYa5 SINE Alu 1 287 -24 29 0 0 0 chr3 34235185 34235214 -183801944 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr3 34235556 34235619 -183801539 + AT_rich Low_complexity Low_complexity 1 63 0 4408 215 34 18 chr3 34236348 34237382 -183799776 - L1M2 LINE L1 -5447 1402 353 369 203 14 0 chr3 34237483 34237557 -183799601 + L1MB7 LINE L1 4052 4126 -2020 2954 226 23 22 chr3 34237594 34238329 -183798829 + L1MB7 LINE L1 5442 6177 -7 2559 127 5 24 chr3 34238838 34239257 -183797901 - L1PA15 LINE L1 -5 6160 5750 597 304 100 5 chr3 34240061 34240281 -183796877 - MIR SINE MIR -19 243 3 240 231 264 25 chr3 34240452 34240573 -183796585 + MIR SINE MIR 17 166 -96 309 343 30 42 chr3 34241085 34241251 -183795907 - L2 LINE L2 -242 3030 2867 452 228 101 42 chr3 34241471 34241608 -183795550 + L1MC5 LINE L1 7676 7834 -127 2459 57 7 0 chr3 34241608 34241907 -183795251 - AluSp SINE Alu -11 302 2 452 228 101 42 chr3 34241907 34242006 -183795152 + L1MC5 LINE L1 7834 7926 -35 21 0 0 0 chr3 34242260 34242281 -183794877 + AT_rich Low_complexity Low_complexity 1 21 0 332 276 296 10 chr3 34242720 34242923 -183794235 - MIR SINE MIR 0 262 2 21 0 0 0 chr3 34244780 34244801 -183792357 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 34245536 34245557 -183791601 + GC_rich Low_complexity Low_complexity 1 21 0 208 143 29 0 chr3 34245881 34245916 -183791242 + G-rich Low_complexity Low_complexity 4 39 0 202 229 145 36 chr3 34246491 34246574 -183790584 - L2 LINE L2 -14 3299 3208 2118 116 0 7 chr3 34247198 34247500 -183789658 - AluSx SINE Alu -12 300 1 1862 109 0 0 chr3 34247900 34248147 -183789011 + AluSx SINE Alu 54 300 -12 1779 111 33 0 chr3 34248563 34248806 -183788352 + AluSx SINE Alu 37 287 -25 270 196 0 0 chr3 34250052 34250098 -183787060 + Alu SINE Alu 1 46 -253 215 205 0 0 chr3 34250447 34250486 -183786672 + L2 LINE L2 3263 3301 -12 404 283 103 41 chr3 34250922 34251075 -183786083 - MIR SINE MIR -12 250 74 2153 126 3 3 chr3 34251075 34251376 -183785782 + AluSx SINE Alu 1 301 -11 404 283 103 41 chr3 34251376 34251454 -183785704 - MIR SINE MIR -188 74 2 2117 98 6 44 chr3 34251781 34252097 -183785061 - AluSx SINE Alu -8 304 1 281 173 0 80 chr3 34252555 34252630 -183784528 - MER103 DNA DNA -57 109 41 2105 117 0 0 chr3 34252735 34253008 -183784150 + AluSx SINE Alu 3 275 -37 219 36 0 0 chr3 34253012 34253040 -183784118 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 335 247 22 11 chr3 34253080 34253169 -183783989 - L1ME4a LINE L1 -65 6056 5967 515 245 25 32 chr3 34253219 34253396 -183783762 + L1ME3A LINE L1 5412 5597 -565 333 260 0 0 chr3 34253394 34253471 -183783687 + L1ME3A LINE L1 5561 5637 -533 * 8292 173 63 43 chr3 34253475 34255151 -183782007 - MER52A LTR ERV1 0 1755 47 1191 223 157 54 chr3 34255488 34255787 -183781371 + L1ME3A LINE L1 5619 5886 -284 531 0 0 0 chr3 34255787 34255846 -183781312 + (TA)n Simple_repeat Simple_repeat 1 59 0 2116 118 3 3 chr3 34255848 34256137 -183781021 - AluSq SINE Alu -23 290 2 1191 223 157 54 chr3 34256137 34256331 -183780827 + L1ME3A LINE L1 5886 6165 -5 665 254 63 0 chr3 34256336 34256525 -183780633 + HsTC2 DNA Tc2 1524 1724 -174 249 274 49 10 chr3 34256697 34256799 -183780359 - MIR SINE MIR -10 252 147 792 192 45 98 chr3 34257174 34257398 -183779760 - MER20 DNA MER1_type -7 212 1 549 204 49 35 chr3 34257459 34257601 -183779557 - MIR SINE MIR -103 159 16 346 332 107 11 chr3 34258177 34258364 -183778794 - L2 LINE L2 -1 3312 3108 2088 116 7 3 chr3 34258688 34258982 -183778176 - AluSx SINE Alu -17 295 1 560 124 0 77 chr3 34260068 34260262 -183776896 + (AGGGGG)n Simple_repeat Simple_repeat 2 180 0 23 33 0 0 chr3 34260720 34260750 -183776408 + GC_rich Low_complexity Low_complexity 1 30 0 367 275 19 12 chr3 34260763 34260923 -183776235 + G-rich Low_complexity Low_complexity 2 162 0 245 289 23 16 chr3 34261091 34261219 -183775939 + GA-rich Low_complexity Low_complexity 2 130 0 2607 52 0 0 chr3 34261745 34262054 -183775104 - AluY SINE Alu -2 309 1 201 39 0 0 chr3 34262117 34262143 -183775015 + (CAA)n Simple_repeat Simple_repeat 3 28 0 220 122 0 24 chr3 34262547 34262588 -183774570 + (ATTTG)n Simple_repeat Simple_repeat 4 43 0 278 341 32 24 chr3 34262959 34263082 -183774076 - MIR SINE MIR -119 143 20 810 198 121 13 chr3 34263268 34263425 -183773733 - FAM SINE Alu -1 174 1 268 198 210 12 chr3 34263697 34263778 -183773380 + MER103 DNA DNA 69 165 -1 4416 187 57 11 chr3 34263902 34264256 -183772902 + L1MB8 LINE L1 4350 4686 -1492 2499 60 0 0 chr3 34264256 34264555 -183772603 + AluY SINE Alu 1 299 -12 4416 187 57 11 chr3 34264555 34265955 -183771203 + L1MB8 LINE L1 4686 6172 -6 247 158 0 0 chr3 34267263 34267301 -183769857 - L2 LINE L2 0 3272 3235 507 248 183 0 chr3 34269075 34269212 -183767946 + MER5A DNA MER1_type 27 188 -1 198 103 0 0 chr3 34269440 34269469 -183767689 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 525 282 152 19 chr3 34269817 34270193 -183766965 + L2 LINE L2 1959 2384 -930 * 880 250 108 60 chr3 34270176 34270430 -183766728 - L2 LINE L2 -5 3308 3068 1458 178 33 23 chr3 34270430 34270734 -183766424 + AluJo SINE Alu 5 311 -1 880 250 108 60 chr3 34270734 34271148 -183766010 - L2 LINE L2 -245 3068 2709 2080 115 7 0 chr3 34271420 34271698 -183765460 - AluSx SINE Alu -16 296 17 206 274 32 0 chr3 34271943 34272005 -183765153 - MIR SINE MIR -64 144 81 250 201 44 11 chr3 34273316 34273390 -183763768 + MIR SINE MIR 36 115 -93 347 24 0 0 chr3 34274006 34274048 -183763110 - L1P4 LINE L1 -643 5531 5490 6534 102 4 22 chr3 34274383 34275878 -183761280 - L1PA12 LINE L1 0 6168 4697 2195 135 0 0 chr3 34275878 34276189 -183760969 + AluY SINE Alu 1 311 0 6534 102 4 22 chr3 34276189 34276403 -183760755 - L1PA12 LINE L1 -1471 4697 4481 1759 155 0 4 chr3 34276438 34276709 -183760449 + AluJb SINE Alu 24 293 -19 192 378 37 0 chr3 34277271 34277353 -183759805 + MIR SINE MIR 54 138 -70 1830 166 7 10 chr3 34277446 34277754 -183759404 - AluJb SINE Alu -5 307 1 21 0 0 0 chr3 34277906 34277927 -183759231 + AT_rich Low_complexity Low_complexity 1 21 0 535 257 139 20 chr3 34278127 34278329 -183758829 - MIR SINE MIR -17 245 20 253 183 0 37 chr3 34278440 34278522 -183758636 + GA-rich Low_complexity Low_complexity 3 81 0 4180 44 0 0 chr3 34279560 34280038 -183757120 - L1PA3 LINE L1 -1 6154 5677 22 0 0 0 chr3 34280050 34280072 -183757086 + AT_rich Low_complexity Low_complexity 1 22 0 479 307 7 0 chr3 34280135 34280288 -183756870 - ERVL LTR ERVL -384 5380 5227 396 371 60 22 chr3 34280328 34280697 -183756461 - ERVL LTR ERVL -636 5128 4746 15839 30 0 0 chr3 34280771 34283389 -183753769 - L1HS LINE L1 0 6155 3538 2105 107 4 0 chr3 34285285 34285593 -183751565 + AluSx SINE Alu 1 309 0 375 249 183 52 chr3 34286078 34286367 -183750791 + L1ME4a LINE L1 5774 6100 -21 25 51 0 0 chr3 34286386 34286425 -183750733 + AT_rich Low_complexity Low_complexity 1 39 0 330 316 101 0 chr3 34286689 34286857 -183750301 - MIR SINE MIR 0 262 78 414 224 60 90 chr3 34287348 34287549 -183749609 + L2 LINE L2 3119 3313 0 198 337 20 20 chr3 34288463 34288561 -183748597 - L2 LINE L2 -1435 1879 1782 267 235 82 24 chr3 34288813 34288898 -183748260 + MIR3 SINE MIR 70 159 -49 247 331 55 50 chr3 34288899 34289080 -183748078 - MER5A DNA MER1_type 0 189 8 279 0 0 0 chr3 34290221 34290252 -183746906 + (T)n Simple_repeat Simple_repeat 1 31 0 774 266 121 35 chr3 34290397 34291090 -183746068 + L1MC4a LINE L1 5174 5398 -748 1731 137 108 4 chr3 34291222 34291499 -183745659 + AluJb SINE Alu 1 306 -6 2136 126 51 46 chr3 34291511 34291694 -183745464 + THE1C LTR MaLR 1 182 -193 2022 102 42 0 chr3 34291694 34291977 -183745181 - AluSx SINE Alu -17 295 1 2136 126 51 46 chr3 34291977 34292166 -183744992 + THE1C LTR MaLR 182 375 0 430 212 62 88 chr3 34293008 34293209 -183743949 - Charlie8 DNA MER1_type -2142 275 89 373 282 92 29 chr3 34293230 34293501 -183743657 + L1MC4a LINE L1 5771 6054 -1754 320 261 114 61 chr3 34293854 34294048 -183743110 + HAL1 LINE L1 851 1062 -1445 2331 52 10 42 chr3 34294048 34294356 -183742802 + AluY SINE Alu 1 298 -13 320 261 114 61 chr3 34294356 34294406 -183742752 + HAL1 LINE L1 1062 1108 -1399 322 211 110 8 chr3 34294482 34294609 -183742549 + L1P5 LINE L1 5332 5468 -686 1241 235 186 20 chr3 34294627 34295083 -183742075 - MLT1F LTR MaLR -10 532 1 369 290 158 6 chr3 34295089 34295323 -183741835 + L1ME LINE L1 5486 5772 -398 344 252 163 8 chr3 34295771 34295894 -183741264 + MIR SINE MIR 118 259 -3 392 281 32 53 chr3 34296369 34296513 -183740645 + MIR3 SINE MIR 56 197 -11 2432 71 0 0 chr3 34297007 34297325 -183739833 + AluY SINE Alu 1 318 0 4329 115 31 0 chr3 34297337 34298024 -183739134 - L1P LINE L1 -1134 5012 4305 6342 91 19 0 chr3 34298024 34299122 -183738036 + L1PA8 LINE L1 5046 6165 -7 719 206 8 0 chr3 34299599 34299730 -183737428 + FLAM_A SINE Alu 1 132 -1 295 261 87 33 chr3 34299881 34299973 -183737185 + L2 LINE L2 3168 3264 -8 23 0 0 0 chr3 34301188 34301211 -183735947 + AT_rich Low_complexity Low_complexity 1 23 0 198 343 0 43 chr3 34302209 34302279 -183734879 + L2 LINE L2 150 216 -3098 1194 181 177 0 chr3 34302418 34302661 -183734497 - AluJo SINE Alu -15 287 2 2483 72 13 0 chr3 34302786 34303093 -183734065 + AluY SINE Alu 1 311 0 2038 142 3 0 chr3 34303251 34303553 -183733605 + AluSx SINE Alu 2 304 -8 180 111 0 0 chr3 34303580 34303607 -183733551 + (TA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr3 34305059 34305085 -183732073 + AT_rich Low_complexity Low_complexity 1 26 0 265 329 79 61 chr3 34305938 34306166 -183730992 + L2 LINE L2 2824 3055 -217 3318 174 92 90 chr3 34306169 34307070 -183730088 + MER21A LTR ERV1 1 903 -28 354 266 38 76 chr3 34307553 34307711 -183729447 - L2 LINE L2 -7 3306 3155 316 326 127 76 chr3 34308748 34309039 -183728119 + L2 LINE L2 2967 3272 0 203 368 23 11 chr3 34309528 34309615 -183727543 + L2 LINE L2 3210 3297 -16 499 136 11 11 chr3 34309774 34309862 -183727296 + AluSp/q SINE Alu 212 299 -14 2056 148 28 52 chr3 34309864 34309984 -183727174 + L1MA4 LINE L1 4996 5117 -1183 2086 68 79 0 chr3 34309984 34310264 -183726894 - AluY SINE Alu -9 302 1 2056 148 28 52 chr3 34310264 34310500 -183726658 + L1MA4 LINE L1 5117 5357 -943 2076 143 3 7 chr3 34310500 34310808 -183726350 + AluSx SINE Alu 1 307 -5 2056 148 28 52 chr3 34310808 34311142 -183726016 + L1MA4 LINE L1 5357 5667 -633 24 91 0 0 chr3 34311155 34311221 -183725937 + AT_rich Low_complexity Low_complexity 1 66 0 5524 159 39 49 chr3 34311223 34311580 -183725578 - L1PB1 LINE L1 0 6867 6508 2024 127 7 3 chr3 34311580 34311872 -183725286 - AluSq SINE Alu -20 293 1 5524 159 39 49 chr3 34311872 34313738 -183723420 - L1PB1 LINE L1 -359 6508 4681 18130 119 75 9 chr3 34313743 34316828 -183720330 - L1PB1 LINE L1 -3570 3292 1 2004 121 0 7 chr3 34316829 34317135 -183720023 + L1MA4 LINE L1 5662 5965 -335 29 0 0 0 chr3 34317154 34317183 -183719975 + AT_rich Low_complexity Low_complexity 1 29 0 1757 168 12 6 chr3 34317185 34317513 -183719645 + L1MA4 LINE L1 5961 6290 -10 543 208 38 0 chr3 34317710 34317816 -183719342 + MER81 DNA DNA 5 114 0 1138 288 35 19 chr3 34318002 34318374 -183718784 + L2 LINE L2 2211 2588 -726 377 207 35 69 chr3 34318365 34318481 -183718677 - L2 LINE L2 -5 3308 3197 * 360 256 91 80 chr3 34318461 34318637 -183718521 + L2 LINE L2 2569 2746 -568 * 1762 124 23 0 chr3 34318637 34318903 -183718255 + AluSp SINE Alu 1 272 -41 26 0 0 0 chr3 34320183 34320209 -183716949 + AT_rich Low_complexity Low_complexity 1 26 0 768 339 68 26 chr3 34320330 34320778 -183716380 + L2 LINE L2 2590 3063 -209 31 58 0 0 chr3 34320889 34320941 -183716217 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 34321824 34321845 -183715313 + AT_rich Low_complexity Low_complexity 1 21 0 2783 226 88 5 chr3 34322026 34322801 -183714357 + L1ME3A LINE L1 5328 6166 -4 23 0 0 0 chr3 34323384 34323407 -183713751 + AT_rich Low_complexity Low_complexity 1 23 0 465 19 0 0 chr3 34324197 34324251 -183712907 + (TG)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr3 34324445 34324488 -183712670 + AT_rich Low_complexity Low_complexity 1 43 0 2057 127 3 10 chr3 34324807 34325099 -183712059 - AluSx SINE Alu -22 290 1 2246 93 7 0 chr3 34325151 34325451 -183711707 + AluSp SINE Alu 1 302 -11 818 126 0 8 chr3 34325451 34325570 -183711588 - AluJo/FLAM SINE Alu -184 118 1 910 210 15 45 chr3 34325970 34326194 -183710964 + AluSg/x SINE Alu 90 307 0 2181 200 86 14 chr3 34326395 34327299 -183709859 + L1ME LINE L1 4850 5800 -366 422 200 55 9 chr3 34327302 34327412 -183709746 + L1MA10 LINE L1 6220 6334 0 856 216 64 8 chr3 34328315 34328551 -183708607 + L1MA4 LINE L1 6052 6300 0 267 252 154 8 chr3 34328564 34328687 -183708471 - MIR SINE MIR -10 252 112 2346 74 0 13 chr3 34329002 34329301 -183707857 - AluSc SINE Alu -14 295 1 870 94 0 55 chr3 34330083 34330211 -183706947 - AluSg/x SINE Alu -16 294 174 22 0 0 0 chr3 34330387 34330409 -183706749 + AT_rich Low_complexity Low_complexity 1 22 0 899 255 42 5 chr3 34330705 34330917 -183706241 - MER58A DNA MER1_type 0 224 5 574 248 157 66 chr3 34332132 34332302 -183704856 + L1ME LINE L1 4457 4610 -1536 2159 127 0 10 chr3 34332302 34332610 -183704548 + AluSx SINE Alu 1 305 -7 574 248 157 66 chr3 34332610 34333169 -183703989 + L1ME LINE L1 4610 5268 -878 2241 83 0 33 chr3 34333169 34333470 -183703688 + AluSq SINE Alu 4 294 -19 574 248 157 66 chr3 34333470 34333541 -183703617 + L1ME LINE L1 5268 5331 -815 471 264 177 15 chr3 34333574 34333839 -183703319 + L1ME LINE L1 5512 5819 -302 766 259 239 28 chr3 34334107 34334262 -183702896 + L2 LINE L2 2656 2777 -536 1470 209 63 73 chr3 34334262 34334770 -183702388 + MLT1D LTR MaLR 2 504 -1 766 259 239 28 chr3 34334770 34335149 -183702009 + L2 LINE L2 2777 3312 -1 831 228 162 84 chr3 34336016 34336490 -183700668 + MLT1J LTR MaLR 1 511 0 739 200 91 11 chr3 34336582 34336757 -183700401 + MER3 DNA MER1_type 4 192 -17 306 152 30 0 chr3 34337910 34337976 -183699182 + L1ME4a LINE L1 6054 6121 0 1534 98 4 27 chr3 34338287 34338512 -183698646 - AluSq SINE Alu -12 301 82 3764 219 42 32 chr3 34339085 34340000 -183697158 + L1MCb LINE L1 19 942 -5103 452 244 92 8 chr3 34340027 34340158 -183697000 - MIR SINE MIR -109 153 12 2808 167 12 14 chr3 34340378 34340894 -183696264 + L1MB3 LINE L1 5317 5831 -352 1644 155 81 20 chr3 34341412 34341450 -183695708 + L1MB3 LINE L1 5814 5848 -335 1786 142 70 25 chr3 34341450 34341809 -183695349 - THE1C LTR MaLR 0 375 1 1644 155 81 20 chr3 34341809 34342118 -183695040 + L1MB3 LINE L1 5848 6182 -1 1341 170 72 0 chr3 34342262 34342485 -183694673 + MER8 DNA MER2_type 1 239 0 23 0 0 0 chr3 34342768 34342791 -183694367 + AT_rich Low_complexity Low_complexity 1 23 0 2190 120 3 0 chr3 34343669 34343977 -183693181 - AluSg SINE Alu -1 309 1 1192 201 8 26 chr3 34344017 34344251 -183692907 + AluJo SINE Alu 34 263 -49 207 91 23 45 chr3 34344261 34344305 -183692853 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 404 296 40 33 chr3 34344387 34344539 -183692619 + HAL1 LINE L1 1169 1321 -1186 366 290 39 21 chr3 34344543 34344810 -183692348 + HAL1 LINE L1 1364 1651 -856 21 0 0 0 chr3 34344893 34344914 -183692244 + AT_rich Low_complexity Low_complexity 1 21 0 375 270 135 22 chr3 34345156 34345334 -183691824 + L1M4c LINE L1 2234 2431 -3953 266 286 104 0 chr3 34345343 34345420 -183691738 - L2 LINE L2 -11 3261 3177 190 333 159 0 chr3 34345472 34345598 -183691560 - L2 LINE L2 -3 3310 3165 420 312 176 39 chr3 34345762 34346242 -183690916 - L2 LINE L2 -263 3009 2455 180 269 183 54 chr3 34348141 34348327 -183688831 - L3 LINE CR1 -1044 533 324 414 291 99 29 chr3 34348756 34348928 -183688230 + MIR SINE MIR 37 220 -42 1068 245 133 37 chr3 34349178 34349725 -183687433 + Charlie7 DNA MER1_type 33 632 -1980 1754 172 3 10 chr3 34349755 34350051 -183687107 + AluJo SINE Alu 5 298 -14 291 217 36 58 chr3 34350098 34350236 -183686922 + Charlie7 DNA MER1_type 2477 2611 -1 193 319 64 32 chr3 34350372 34350466 -183686692 + MER5A DNA MER1_type 40 136 -53 243 0 0 0 chr3 34351375 34351402 -183685756 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 217 80 40 chr3 34351562 34351737 -183685421 - L1ME4a LINE L1 -4 6117 5936 2583 64 3 0 chr3 34352036 34352348 -183684810 + AluSp SINE Alu 1 313 0 2305 200 36 0 chr3 34352980 34353501 -183683657 + L1MB7 LINE L1 5406 5945 -239 2067 131 3 7 chr3 34354175 34354480 -183682678 + AluSq SINE Alu 1 304 -9 1015 172 11 11 chr3 34354480 34354656 -183682502 + AluSc SINE Alu 131 309 0 22 0 0 0 chr3 34355820 34355842 -183681316 + AT_rich Low_complexity Low_complexity 1 22 0 2212 108 20 0 chr3 34356682 34356978 -183680180 + AluSx SINE Alu 1 302 -10 440 291 168 14 chr3 34357200 34357248 -183679910 - MIR SINE MIR -4 258 219 1554 141 27 23 chr3 34357248 34357511 -183679647 - AluJo SINE Alu -19 293 30 440 291 168 14 chr3 34357511 34357573 -183679585 - MIR SINE MIR -43 219 168 2267 107 0 3 chr3 34357573 34357871 -183679287 - AluSq SINE Alu -16 297 1 440 291 168 14 chr3 34357871 34357979 -183679179 - MIR SINE MIR -94 168 5 2358 107 0 0 chr3 34358516 34358825 -183678333 + AluSg SINE Alu 1 309 -1 248 280 43 0 chr3 34358878 34358971 -183678187 - MER20B DNA MER1_type -641 142 46 456 165 0 33 chr3 34359242 34359333 -183677825 + L1 LINE L1 4915 5002 -1144 2236 95 10 10 chr3 34359335 34359641 -183677517 + AluSx SINE Alu 1 306 -6 1412 92 0 46 chr3 34359645 34359862 -183677296 + AluSq SINE Alu 1 207 -106 709 270 140 39 chr3 34360094 34360523 -183676635 + L2 LINE L2 2736 3271 -42 2246 105 3 13 chr3 34361601 34361916 -183675242 - AluSx SINE Alu 0 312 1 319 257 0 0 chr3 34362187 34362261 -183674897 + MER117 DNA MER1_type 47 120 -77 373 239 255 23 chr3 34362557 34362816 -183674342 + MER5C DNA MER1_type 4 322 -2 242 275 143 0 chr3 34362876 34362967 -183674191 - MER20 DNA MER1_type -1 218 115 1110 156 33 19 chr3 34363300 34363511 -183673647 - AluJo SINE Alu -13 299 86 1587 158 95 7 chr3 34363654 34363927 -183673231 - AluJo SINE Alu -13 299 3 649 100 30 0 chr3 34364286 34364386 -183672772 + AluSp/q SINE Alu 192 294 -19 23 0 0 0 chr3 34365388 34365411 -183671747 + AT_rich Low_complexity Low_complexity 1 23 0 528 288 104 107 chr3 34365744 34366531 -183670627 - L1M2 LINE L1 -5626 1223 439 306 217 30 131 chr3 34366923 34367121 -183670037 - MER112 DNA MER1_type -7 253 76 227 211 0 0 chr3 34367515 34367567 -183669591 - MLT1J1 LTR MaLR -42 404 353 765 182 62 23 chr3 34367627 34367803 -183669355 - MER58A DNA MER1_type 0 224 42 216 0 0 0 chr3 34367813 34367837 -183669321 + (A)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr3 34367959 34367984 -183669174 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 34368199 34368227 -183668931 + AT_rich Low_complexity Low_complexity 1 28 0 974 113 0 0 chr3 34368229 34368362 -183668796 + FLAM_C SINE Alu 1 133 0 1128 133 0 12 chr3 34368849 34369015 -183668143 + AluSg/x SINE Alu 132 295 -15 240 226 0 0 chr3 34369576 34369629 -183667529 - L2 LINE L2 0 3313 3261 639 218 170 0 chr3 34369680 34369827 -183667331 + MER5A DNA MER1_type 17 188 -1 234 386 0 26 chr3 34370057 34370210 -183666948 + L2 LINE L2 2626 2774 -540 270 347 94 50 chr3 34370406 34370814 -183666344 + L2 LINE L2 2772 3186 -86 404 91 15 0 chr3 34371976 34372042 -183665116 - MER41B LTR ERV1 -88 547 481 266 287 56 28 chr3 34372241 34372384 -183664774 - L1ME LINE L1 -272 5849 5703 253 320 0 0 chr3 34372700 34372778 -183664380 + (CG)n Simple_repeat Simple_repeat 1 78 0 230 308 13 58 chr3 34373041 34373197 -183663961 - MIR3 SINE MIR -37 171 23 209 154 0 0 chr3 34375130 34375169 -183661989 - MER5A DNA MER1_type -83 106 68 964 171 73 24 chr3 34375169 34375374 -183661784 - AluJo SINE Alu -12 300 86 266 196 143 0 chr3 34375375 34375431 -183661727 - MER5A DNA MER1_type -113 76 13 972 176 83 10 chr3 34375565 34375770 -183661388 - MER58A DNA MER1_type -3 221 2 842 107 0 57 chr3 34375786 34375971 -183661187 - FLAM_C SINE Alu 0 177 1 220 205 0 0 chr3 34376106 34376145 -183661013 + (CATA)n Simple_repeat Simple_repeat 2 40 0 945 201 15 25 chr3 34377264 34377468 -183659690 - MER20 DNA MER1_type -1 218 17 213 333 251 14 chr3 34377664 34377871 -183659287 - L3 LINE CR1 -1012 565 310 502 277 158 47 chr3 34378011 34378372 -183658786 + LTR16C LTR ERVL 89 489 -2 196 362 43 0 chr3 34378597 34378691 -183658467 - L2 LINE L2 0 3313 3216 * 331 267 99 61 chr3 34378676 34378807 -183658351 - L2 LINE L2 -218 3054 2919 1574 185 83 43 chr3 34378949 34379542 -183657616 + MLT2F LTR ERVL 1 663 0 389 306 56 12 chr3 34379551 34379711 -183657447 - L2 LINE L2 -569 2745 2579 1121 204 84 35 chr3 34379772 34380116 -183657042 - L1ME1 LINE L1 -5 6161 5801 2286 99 3 0 chr3 34380131 34380425 -183656733 - AluSq SINE Alu -18 295 1 915 261 100 16 chr3 34380853 34381163 -183655995 - LTR16B LTR ERVL 0 464 129 489 317 39 32 chr3 34381220 34381785 -183655373 - HERV16 LTR ERVL -5 5320 4756 815 341 48 26 chr3 34381901 34382923 -183654235 - HERV16 LTR ERVL -828 4826 3722 202 214 0 0 chr3 34382940 34382982 -183654176 - L2 LINE L2 -775 2539 2498 450 261 29 36 chr3 34383025 34383163 -183653995 + L2 LINE L2 3177 3313 0 1009 321 134 29 chr3 34383165 34383795 -183653363 + L2 LINE L2 2403 3104 -209 203 275 8 150 chr3 34384075 34384195 -183652963 + L2 LINE L2 3175 3277 -36 211 225 0 0 chr3 34384196 34384236 -183652922 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 733 157 0 30 chr3 34384597 34384731 -183652427 - MER58B DNA MER1_type -15 326 197 717 319 19 5 chr3 34384954 34385167 -183651991 - MIR SINE MIR -30 232 17 28 0 0 0 chr3 34385460 34385488 -183651670 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 34386211 34386243 -183650915 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2177 123 0 0 chr3 34386262 34386546 -183650612 - AluSg SINE Alu -15 295 12 281 309 166 22 chr3 34386619 34386800 -183650358 + L3b LINE CR1 1374 1580 -3 703 227 13 7 chr3 34387274 34387424 -183649734 + MIR SINE MIR 9 159 -103 2897 60 4 114 chr3 34387425 34387907 -183649251 - MLT2A1 LTR ERVL -2 442 14 471 198 30 0 chr3 34387913 34388014 -183649144 + MIR SINE MIR 154 257 -5 426 212 76 0 chr3 34388158 34388276 -183648882 - L1MC5 LINE L1 -124 7837 7711 261 242 147 26 chr3 34388583 34388773 -183648385 + LTR48 LTR ERV1 524 736 -51 686 219 7 0 chr3 34388829 34388966 -183648192 + MER58B DNA MER1_type 194 331 -10 391 243 106 97 chr3 34389067 34389204 -183647954 - L1MC5 LINE L1 -266 7695 7561 1539 195 26 19 chr3 34389204 34389512 -183647646 + AluJo SINE Alu 1 310 -2 391 243 106 97 chr3 34389512 34389640 -183647518 - L1MC5 LINE L1 -400 7561 7436 2333 85 0 7 chr3 34389640 34389945 -183647213 + AluY SINE Alu 1 303 -8 391 243 106 97 chr3 34389945 34390151 -183647007 - L1MC5 LINE L1 -525 7436 7219 1076 268 73 77 chr3 34390343 34390362 -183646796 + L2 LINE L2 2524 2542 -771 2135 103 4 0 chr3 34390362 34390684 -183646474 + AluSg SINE Alu 1 323 0 1076 268 73 77 chr3 34390684 34390870 -183646288 + L2 LINE L2 2542 2727 -586 2022 93 7 21 chr3 34390870 34391176 -183645982 + AluSg1 SINE Alu 5 306 0 1076 268 73 77 chr3 34391176 34391477 -183645681 + L2 LINE L2 2727 3025 -288 2134 120 3 3 chr3 34391477 34391786 -183645372 + AluSx SINE Alu 1 309 -3 1076 268 73 77 chr3 34391786 34392072 -183645086 + L2 LINE L2 3025 3311 -2 675 288 28 19 chr3 34392189 34392404 -183644754 - MIR SINE MIR -32 230 14 348 269 144 0 chr3 34392467 34392571 -183644587 - L2 LINE L2 0 3313 3195 323 244 181 55 chr3 34392795 34392922 -183644236 - MIR SINE MIR -113 149 7 210 300 180 35 chr3 34393433 34393574 -183643584 + MIR SINE MIR 14 170 -57 210 254 15 60 chr3 34393579 34393646 -183643512 - L2 LINE L2 0 3313 3250 193 188 47 62 chr3 34394242 34394306 -183642852 - MIR SINE MIR -84 178 116 387 0 0 0 chr3 34394417 34394460 -183642698 + (CA)n Simple_repeat Simple_repeat 2 44 0 268 233 89 33 chr3 34394672 34394762 -183642396 - MLT1I LTR MaLR -39 370 276 253 238 36 36 chr3 34394841 34394925 -183642233 - MLT1I LTR MaLR -266 143 60 1091 254 35 16 chr3 34395221 34395477 -183641681 + MLT1H LTR MaLR 62 322 -227 3471 118 7 61 chr3 34395648 34395717 -183641441 - L1PA16 LINE L1 0 6166 6095 2318 56 32 0 chr3 34395717 34396002 -183641156 - AluY SINE Alu -17 294 1 3471 118 7 61 chr3 34396002 34396436 -183640722 - L1PA16 LINE L1 -71 6095 5695 1744 119 58 51 chr3 34396436 34396590 -183640568 - AluSx SINE Alu -16 296 138 2184 125 3 6 chr3 34396590 34396901 -183640257 - AluSx SINE Alu -2 310 1 1744 119 58 51 chr3 34396901 34397040 -183640118 - AluSx SINE Alu -174 138 1 3471 118 7 61 chr3 34397040 34397110 -183640048 - L1PA16 LINE L1 -471 5695 5623 4190 153 20 4 chr3 34397110 34398121 -183639037 + L1P4 LINE L1 4556 5577 -589 849 215 6 25 chr3 34398122 34398285 -183638873 - FRAM SINE Alu -16 160 1 5064 160 40 6 chr3 34398343 34399142 -183638016 + LTR1B LTR ERV1 1 826 0 472 243 0 19 chr3 34400594 34400701 -183636457 + L2 LINE L2 3208 3312 -1 583 234 45 45 chr3 34401059 34401260 -183635898 - L2 LINE L2 -965 2349 2149 457 281 144 19 chr3 34401271 34401431 -183635727 - MER5A DNA MER1_type -6 183 4 228 341 219 25 chr3 34401431 34402277 -183634881 - L2 LINE L2 -1161 2153 1142 1267 161 22 65 chr3 34402548 34402871 -183634287 + MER33 DNA MER1_type 6 314 -10 658 270 36 24 chr3 34453156 34453555 -183583603 + MLT1G1 LTR MaLR 100 595 0 616 183 32 97 chr3 34453854 34454040 -183583118 - MER5B DNA MER1_type -3 175 2 1469 248 41 13 chr3 34454594 34455057 -183582101 - LTR33 LTR ERVL -45 476 1 2570 299 104 14 chr3 34455060 34456085 -183581073 - L2 LINE L2 -1864 1450 333 734 288 38 29 chr3 34456100 34456340 -183580818 - MIR SINE MIR -16 246 5 413 280 185 12 chr3 34456358 34456601 -183580557 - L2 LINE L2 -2998 316 32 207 0 0 0 chr3 34456728 34456751 -183580407 + (T)n Simple_repeat Simple_repeat 1 23 0 33 43 0 0 chr3 34456777 34456824 -183580334 + AT_rich Low_complexity Low_complexity 1 47 0 385 329 64 21 chr3 34458174 34458314 -183578844 + L2 LINE L2 3168 3313 0 632 258 102 48 chr3 34459161 34459559 -183577599 - MLT1G LTR MaLR -107 460 22 1617 167 69 28 chr3 34459592 34459952 -183577206 + THE1C LTR MaLR 1 375 0 2072 128 3 10 chr3 34460662 34460968 -183576190 - AluSx SINE Alu -8 304 1 693 300 4 11 chr3 34460983 34461243 -183575915 - MIR SINE MIR -1 261 4 604 197 45 15 chr3 34461565 34461697 -183575461 - L2 LINE L2 -1272 2042 1907 832 238 71 10 chr3 34461852 34462098 -183575060 + MIR SINE MIR 10 262 0 425 78 0 0 chr3 34462636 34462700 -183574458 - L1P LINE L1 -780 5392 5329 921 278 65 57 chr3 34463483 34463993 -183573165 + MLT2B3 LTR ERVL 1 514 -40 211 277 0 0 chr3 34464282 34464329 -183572829 + CT-rich Low_complexity Low_complexity 2 48 0 618 175 51 120 chr3 34464330 34464517 -183572641 + MLT1A2 LTR MaLR 173 345 -29 459 0 0 0 chr3 34464517 34464568 -183572590 + (TG)n Simple_repeat Simple_repeat 2 52 0 618 175 51 120 chr3 34464568 34464597 -183572561 + MLT1A2 LTR MaLR 345 374 0 884 280 65 38 chr3 34465276 34465647 -183571511 + LTR16C LTR ERVL 81 461 -30 2164 178 78 59 chr3 34465827 34466366 -183570792 + MER44D DNA MER2_type 2 605 0 797 229 116 51 chr3 34467033 34467325 -183569833 - LTR16C LTR ERVL 0 491 181 1316 284 57 5 chr3 34467328 34467751 -183569407 + LTR16A LTR ERVL 1 445 -5 344 377 106 33 chr3 34468185 34468636 -183568522 + L2 LINE L2 2474 2957 -357 363 381 45 6 chr3 34468721 34468897 -183568261 - MIR3 SINE MIR -9 199 17 523 235 41 18 chr3 34469157 34469327 -183567831 - MER104 DNA MER2_type -3 177 4 247 294 174 0 chr3 34469476 34469568 -183567590 - L2 LINE L2 -1 3271 3164 981 287 13 4 chr3 34469865 34470102 -183567056 + MIR SINE MIR 3 241 -21 339 345 111 13 chr3 34470181 34470407 -183566751 + MIR SINE MIR 15 262 0 1119 269 18 26 chr3 34471740 34472082 -183565076 + MLT1H LTR MaLR 6 344 -205 243 227 15 15 chr3 34472356 34472422 -183564736 + MLT1J2 LTR MaLR 77 142 -308 1889 217 92 28 chr3 34472480 34473321 -183563837 + L1MB8 LINE L1 5122 6011 -167 290 183 125 33 chr3 34473334 34473454 -183563704 + THE1C LTR MaLR 19 149 -226 432 310 6 19 chr3 34476090 34476248 -183560910 - MLT1H LTR MaLR -339 210 55 1055 225 121 114 chr3 34476392 34476979 -183560179 - MLT1E LTR MaLR -2 591 1 299 353 8 16 chr3 34477632 34477754 -183559404 + L2 LINE L2 2939 3059 -213 435 210 81 16 chr3 34478628 34478752 -183558406 - LTR67 LTR ERVL -4 553 422 569 312 93 29 chr3 34478803 34479082 -183558076 - ERVL LTR ERVL -1338 4426 4130 320 259 65 29 chr3 34479480 34479619 -183557539 + MLT1I LTR MaLR 232 375 -34 348 324 11 27 chr3 34479767 34479952 -183557206 - ERVL LTR ERVL -1995 3659 3478 290 162 14 0 chr3 34479952 34480026 -183557132 + CT-rich Low_complexity Low_complexity 2 76 0 293 299 0 0 chr3 34480333 34480420 -183556738 - ERVL LTR ERVL -2444 3210 3124 344 362 51 6 chr3 34480495 34480672 -183556486 - ERVL LTR ERVL -1967 3029 2845 400 331 18 18 chr3 34482529 34482695 -183554463 + HAL1 LINE L1 2237 2402 -105 30 59 0 0 chr3 34482735 34482786 -183554372 + AT_rich Low_complexity Low_complexity 1 51 0 4480 218 25 51 chr3 34483103 34484388 -183552770 + L1M4 LINE L1 22 1272 -5270 707 151 50 0 chr3 34485404 34485523 -183551635 - FLAM_C SINE Alu -7 136 12 1771 201 11 72 chr3 34487127 34487518 -183549640 - L1MB1 LINE L1 -15 6174 5760 243 0 0 0 chr3 34487518 34487545 -183549613 + (TG)n Simple_repeat Simple_repeat 2 28 0 191 61 30 0 chr3 34487555 34487588 -183549570 + (TA)n Simple_repeat Simple_repeat 1 34 0 1771 201 11 72 chr3 34487588 34488127 -183549031 - L1MB1 LINE L1 -438 5751 5298 298 185 0 0 chr3 34489036 34489090 -183548068 + Charlie8 DNA MER1_type 138 191 -2226 632 200 137 37 chr3 34489104 34489294 -183547864 - MER3 DNA MER1_type 0 209 1 2353 164 51 26 chr3 34489549 34490042 -183547116 - MLT1D LTR MaLR 0 505 1 2248 92 0 7 chr3 34490516 34490809 -183546349 - AluSx SINE Alu -11 301 11 1834 150 55 65 chr3 34491279 34491678 -183545480 + MLT2C1 LTR ERVL 3 397 0 1627 145 3 48 chr3 34492064 34492436 -183544722 - THE1B LTR MaLR -9 355 1 1024 225 31 56 chr3 34492436 34492757 -183544401 + MER110A LTR ERV1 156 468 0 21 0 0 0 chr3 34493219 34493240 -183543918 + AT_rich Low_complexity Low_complexity 1 21 0 384 22 0 0 chr3 34493833 34493878 -183543280 + (CA)n Simple_repeat Simple_repeat 1 45 0 908 165 163 60 chr3 34494341 34494406 -183542752 - LTR37A LTR ERV1 -1 425 368 2301 80 10 3 chr3 34494406 34494708 -183542450 + AluY SINE Alu 1 304 -7 908 165 163 60 chr3 34494708 34495023 -183542135 - LTR37A LTR ERV1 -58 368 6 924 268 138 10 chr3 34495141 34495541 -183541617 + LTR33 LTR ERVL 4 454 -67 1896 145 142 36 chr3 34495718 34496105 -183541053 - MSTA LTR MaLR 0 428 1 384 256 26 89 chr3 34496734 34496925 -183540233 - MLT1I LTR MaLR -8 401 223 302 260 14 0 chr3 34496970 34497043 -183540115 - MLT1I LTR MaLR -335 74 1 320 233 8 0 chr3 34497443 34497563 -183539595 + CT-rich Low_complexity Low_complexity 4 124 0 456 242 150 33 chr3 34499032 34499185 -183537973 + MLT1J2 LTR MaLR 189 359 -91 1600 201 3 3 chr3 34499575 34499863 -183537295 + AluJo SINE Alu 5 292 -20 235 261 22 120 chr3 34500180 34500272 -183536886 + L2 LINE L2 3182 3264 -8 277 395 0 0 chr3 34500379 34500508 -183536650 + L2 LINE L2 2224 2352 -962 1013 217 38 5 chr3 34501324 34501536 -183535622 + MER58A DNA MER1_type 2 220 -4 256 372 122 6 chr3 34502053 34502217 -183534941 - MIR SINE MIR -62 200 18 755 185 73 0 chr3 34502373 34502524 -183534634 + Charlie1 DNA MER1_type 66 227 -2534 352 235 43 9 chr3 34502522 34502637 -183534521 + Charlie1 DNA MER1_type 2631 2749 -12 * 292 319 80 65 chr3 34502687 34502825 -183534333 + MIR SINE MIR 37 176 -86 1773 239 81 64 chr3 34503093 34503874 -183533284 - L1ME3A LINE L1 -121 6049 5256 327 191 0 16 chr3 34504491 34504554 -183532604 - MER5B DNA MER1_type -3 175 114 6505 189 41 21 chr3 34504575 34507044 -183530114 - L1PA16 LINE L1 -3 6163 3650 * 6576 256 16 12 chr3 34507040 34508962 -183528196 + L1PA16 LINE L1 1719 3647 -2499 311 132 19 0 chr3 34508963 34509016 -183528142 + MER5B DNA MER1_type 125 178 0 217 225 14 56 chr3 34509254 34509325 -183527833 + CT-rich Low_complexity Low_complexity 5 72 0 1520 189 7 39 chr3 34509327 34509633 -183527525 - AluJo SINE Alu -4 308 13 264 300 42 42 chr3 34510193 34510383 -183526775 + L1ME4a LINE L1 5643 5832 -289 393 209 395 0 chr3 34510658 34510792 -183526366 + MER5A DNA MER1_type 3 189 0 189 0 0 0 chr3 34511031 34511052 -183526106 + (TC)n Simple_repeat Simple_repeat 2 22 0 2183 108 3 0 chr3 34511052 34511340 -183525818 - AluSg SINE Alu -17 293 5 1378 197 123 55 chr3 34512415 34512678 -183524480 - MSTD LTR MaLR -6 390 94 1965 135 24 0 chr3 34512678 34512974 -183524184 - AluSg SINE Alu -6 304 2 1378 197 123 55 chr3 34512974 34513075 -183524083 - MSTD LTR MaLR -302 94 1 28 29 0 0 chr3 34513097 34513132 -183524026 + AT_rich Low_complexity Low_complexity 1 35 0 253 349 32 8 chr3 34513534 34513660 -183523498 + MIR SINE MIR 59 187 -75 669 288 68 17 chr3 34513724 34513960 -183523198 + MIR SINE MIR 15 262 0 6907 147 33 10 chr3 34514124 34514771 -183522387 - Tigger1 DNA MER2_type 0 2418 1731 2270 93 3 3 chr3 34514771 34515072 -183522086 - AluY SINE Alu -8 303 3 6907 147 33 10 chr3 34515072 34515590 -183521568 - Tigger1 DNA MER2_type -687 1731 1226 251 191 0 0 chr3 34515690 34515737 -183521421 - Tigger1 DNA MER2_type -1211 1207 1161 1912 190 30 28 chr3 34515743 34516138 -183521020 - Tigger1 DNA MER2_type -2021 397 2 324 215 91 25 chr3 34516432 34516553 -183520605 + L1ME4a LINE L1 5955 6083 -38 332 336 20 27 chr3 34516663 34516812 -183520346 - MIR3 SINE MIR -23 185 38 182 295 16 101 chr3 34517552 34517681 -183519477 + MIR SINE MIR 29 146 -116 21 36 0 0 chr3 34517931 34517959 -183519199 + AT_rich Low_complexity Low_complexity 1 28 0 31210 108 20 60 chr3 34518949 34525367 -183511791 + L1PA7 LINE L1 13 6152 -2 784 117 37 6 chr3 34525521 34525684 -183511474 - L1MA7 LINE L1 0 6291 6124 699 244 19 73 chr3 34527081 34527286 -183509872 - MER20 DNA MER1_type 0 219 26 1224 315 46 13 chr3 34527831 34528221 -183508937 + LTR16A LTR ERVL 16 418 -32 996 319 69 7 chr3 34528515 34528950 -183508208 + MLT1J LTR MaLR 17 478 -33 199 239 25 25 chr3 34529543 34529630 -183507528 + CT-rich Low_complexity Low_complexity 5 94 -69 745 156 0 57 chr3 34529630 34529771 -183507387 - FLAM_A SINE Alu 0 133 1 199 239 25 25 chr3 34529771 34529842 -183507316 + CT-rich Low_complexity Low_complexity 93 163 0 1908 243 32 41 chr3 34530137 34530796 -183506362 - L1ME3A LINE L1 -196 5974 5322 22 35 0 0 chr3 34530812 34530841 -183506317 + AT_rich Low_complexity Low_complexity 1 29 0 329 289 149 0 chr3 34531072 34531193 -183505965 - MIR SINE MIR -74 188 50 1234 219 23 17 chr3 34531250 34531552 -183505606 - AluJo SINE Alu -6 306 3 251 315 94 8 chr3 34531553 34531680 -183505478 - MIR SINE MIR -91 171 34 3123 138 15 81 chr3 34531691 34531784 -183505374 - LTR9 LTR ERV1 -38 574 476 2469 59 0 34 chr3 34531784 34532106 -183505052 + AluY SINE Alu 1 311 0 3123 138 15 81 chr3 34532106 34532627 -183504531 - LTR9 LTR ERV1 -136 476 1 846 78 0 0 chr3 34533127 34533242 -183503916 + (TTCC)n Simple_repeat Simple_repeat 1 115 0 335 264 11 0 chr3 34534153 34534240 -183502918 + LTR16C LTR ERVL 404 491 0 1385 239 70 4 chr3 34535009 34535469 -183501689 - L1M4 LINE L1 -2964 3182 2693 21 0 0 0 chr3 34535484 34535505 -183501653 + AT_rich Low_complexity Low_complexity 1 21 0 1088 287 81 50 chr3 34535513 34536008 -183501150 - LTR33 LTR ERVL -7 514 5 680 341 16 11 chr3 34536198 34536576 -183500582 - ERVL LTR ERVL -390 5374 4995 314 256 23 12 chr3 34538396 34538482 -183498676 + MIR SINE MIR 5 91 -171 1306 145 98 0 chr3 34538690 34538904 -183498254 - MER2 DNA MER2_type -110 235 1 1023 314 48 10 chr3 34539402 34539714 -183497444 + LTR33 LTR ERVL 1 324 -197 428 269 0 0 chr3 34539749 34539842 -183497316 + MER69 DNA AcHobo 11 103 -1123 24 0 0 0 chr3 34540413 34540437 -183496721 + AT_rich Low_complexity Low_complexity 1 24 0 464 219 69 105 chr3 34540437 34540583 -183496575 - HAL1 LINE L1 -3 2504 2354 1618 186 61 0 chr3 34540583 34540910 -183496248 - MER7A DNA MER2_type -1 345 1 464 219 69 105 chr3 34540910 34540929 -183496229 - HAL1 LINE L1 -153 2354 2336 405 0 0 0 chr3 34540929 34540974 -183496184 + (TG)n Simple_repeat Simple_repeat 1 45 0 234 0 0 0 chr3 34540973 34540999 -183496159 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 464 219 69 105 chr3 34540974 34541138 -183496020 - HAL1 LINE L1 -171 2336 2210 202 263 0 0 chr3 34541420 34541458 -183495700 - L2 LINE L2 -18 3295 3258 408 343 77 34 chr3 34541497 34541850 -183495308 - MLT1K LTR MaLR -10 578 211 181 317 171 0 chr3 34541964 34542046 -183495112 - MIR SINE MIR -88 174 79 1045 264 91 14 chr3 34542469 34542765 -183494393 + LTR16C LTR ERVL 159 477 -14 562 287 124 0 chr3 34542977 34543186 -183493972 + MIR SINE MIR 23 257 -5 22 0 0 0 chr3 34543270 34543292 -183493866 + AT_rich Low_complexity Low_complexity 1 22 0 181 283 38 19 chr3 34543893 34543946 -183493212 + MER5A DNA MER1_type 1 54 -135 291 314 121 29 chr3 34544357 34544564 -183492594 + L2 LINE L2 3084 3309 -4 625 233 135 10 chr3 34544976 34545169 -183491989 - L2 LINE L2 -3 3310 3094 2453 238 153 12 chr3 34545213 34546045 -183491113 - L2 LINE L2 -669 2645 1697 399 169 0 12 chr3 34546674 34546757 -183490401 - L1MA5A LINE L1 0 6297 6216 1240 100 0 0 chr3 34546757 34546917 -183490241 - AluSq SINE Alu -153 160 1 22 0 0 0 chr3 34547158 34547180 -183489978 + AT_rich Low_complexity Low_complexity 1 22 0 311 333 100 8 chr3 34547356 34547476 -183489682 + MER5A DNA MER1_type 55 185 -4 22 56 0 0 chr3 34547814 34547850 -183489308 + AT_rich Low_complexity Low_complexity 1 36 0 2093 125 3 0 chr3 34548493 34548780 -183488378 + AluSg SINE Alu 1 288 -22 938 285 231 19 chr3 34549059 34549543 -183487615 + L2 LINE L2 738 1324 -1990 812 234 51 81 chr3 34549640 34550034 -183487124 - MLT1J LTR MaLR -129 382 1 474 256 53 0 chr3 34550036 34550169 -183486989 + L2 LINE L2 1324 1463 -1851 2155 300 174 17 chr3 34550172 34551454 -183485704 + L2 LINE L2 1711 2791 -522 2306 90 3 0 chr3 34551454 34551753 -183485405 - AluY SINE Alu -10 301 2 2240 115 3 0 chr3 34551754 34552050 -183485108 - AluSp SINE Alu -16 297 1 2155 300 174 17 chr3 34552050 34552145 -183485013 + L2 LINE L2 2790 3304 -9 1770 175 80 13 chr3 34553145 34553497 -183483661 + MLT2D LTR ERVL 1 383 -31 414 0 0 0 chr3 34553497 34553543 -183483615 + (CA)n Simple_repeat Simple_repeat 2 47 0 1770 175 80 13 chr3 34553543 34553578 -183483580 + MLT2D LTR ERVL 383 414 0 2197 71 48 0 chr3 34553972 34554267 -183482891 - AluY SINE Alu -2 309 1 183 256 26 0 chr3 34554882 34554921 -183482237 + L2 LINE L2 2586 2625 -689 596 279 109 62 chr3 34554996 34555416 -183481742 + LTR16A LTR ERVL 8 447 -3 261 176 39 0 chr3 34555485 34555536 -183481622 + L2 LINE L2 3209 3261 -11 760 318 65 22 chr3 34556069 34556393 -183480765 + MLT1K LTR MaLR 85 422 -166 365 316 58 73 chr3 34556506 34556848 -183480310 + L2 LINE L2 2935 3271 -1 279 270 9 61 chr3 34558718 34558833 -183478325 + MIR SINE MIR 104 212 -50 550 325 74 28 chr3 34559020 34559383 -183477775 + LTR16C LTR ERVL 96 475 -16 275 214 126 39 chr3 34559869 34559972 -183477186 + L2 LINE L2 3161 3272 0 279 311 87 16 chr3 34560172 34560355 -183476803 + MIR SINE MIR 17 212 -50 1173 260 23 41 chr3 34561238 34561715 -183475443 + MLT1H LTR MaLR 15 545 -4 263 178 0 0 chr3 34564100 34564145 -183473013 - MLT1L LTR MaLR -223 392 348 300 322 34 11 chr3 34564456 34564633 -183472525 + Charlie8 DNA MER1_type 83 263 -2154 215 348 89 71 chr3 34566038 34566262 -183470896 + L2 LINE L2 3045 3272 0 373 169 11 34 chr3 34566459 34566548 -183470610 + L1M4 LINE L1 4147 4233 -1913 4047 114 7 10 chr3 34566549 34567152 -183470006 + LTR43 LTR ERV1 2 602 0 1560 239 72 21 chr3 34567166 34567697 -183469461 + L1MC2 LINE L1 1339 1896 -4488 35215 86 16 8 chr3 34567711 34571465 -183465693 - L1PA6 LINE L1 -13 6141 2324 2347 92 0 0 chr3 34571465 34571758 -183465400 - AluY SINE Alu -18 293 1 35215 86 16 8 chr3 34571758 34574090 -183463068 - L1PA6 LINE L1 -3830 2324 11 8075 135 14 4 chr3 34574124 34576274 -183460884 - L1PA10 LINE L1 -4 6164 4000 850 237 72 6 chr3 34576383 34576716 -183460442 + L1MC2 LINE L1 2125 2479 -3905 862 190 101 53 chr3 34576722 34576903 -183460255 + L1MC2 LINE L1 3733 3931 -2451 2192 128 3 0 chr3 34576903 34577200 -183459958 + AluSp SINE Alu 1 298 -15 862 190 101 53 chr3 34577200 34577265 -183459893 + L1MC2 LINE L1 3931 3991 -2391 1981 169 8 6 chr3 34577313 34577668 -183459490 - MLT1A1 LTR MaLR 0 365 10 950 199 46 10 chr3 34577679 34578029 -183459129 + L1MC2 LINE L1 5390 5748 -672 235 208 38 9 chr3 34581077 34581183 -183455975 + (TA)n Simple_repeat Simple_repeat 2 110 0 249 33 0 0 chr3 34581203 34581233 -183455925 + (TG)n Simple_repeat Simple_repeat 2 31 0 548 144 18 45 chr3 34581637 34581748 -183455410 + L1MC2 LINE L1 6062 6169 -411 * 1258 151 5 0 chr3 34581745 34581957 -183455201 - L1MC/D LINE L1 -670 5663 5451 403 316 35 30 chr3 34581961 34582135 -183455023 - MIR SINE MIR -48 214 42 2089 226 64 72 chr3 34583189 34583252 -183453906 - L1ME2 LINE L1 -301 5863 5801 2179 65 62 0 chr3 34583252 34583528 -183453630 + AluY SINE Alu 1 293 -18 2089 226 64 72 chr3 34583528 34584864 -183452294 - L1ME2 LINE L1 -363 5801 4472 268 128 0 21 chr3 34584866 34584913 -183452245 + THE1C LTR MaLR 1 46 -329 856 184 0 0 chr3 34584924 34585060 -183452098 - AluJo SINE Alu -176 136 1 1736 172 23 20 chr3 34585060 34585403 -183451755 + THE1C LTR MaLR 32 375 0 736 204 144 17 chr3 34585404 34585703 -183451455 - L1ME2 LINE L1 -1673 4473 4137 449 339 110 10 chr3 34586534 34586826 -183450332 + L2 LINE L2 2429 2749 -565 611 243 102 44 chr3 34587477 34587703 -183449455 - MIR SINE MIR -16 246 8 512 279 51 17 chr3 34588108 34588289 -183448869 + MIR SINE MIR 34 219 -43 405 292 15 15 chr3 34588703 34588833 -183448325 + MLT2E LTR ERVL 46 175 -453 294 379 36 12 chr3 34588841 34589094 -183448064 + MLT2E LTR ERVL 356 614 -14 1261 178 94 34 chr3 34589154 34589474 -183447684 - MER58B DNA MER1_type -1 340 2 323 283 85 80 chr3 34589479 34589691 -183447467 + MIR SINE MIR 21 233 -29 21 0 0 0 chr3 34590192 34590213 -183446945 + AT_rich Low_complexity Low_complexity 1 21 0 2171 117 10 3 chr3 34590926 34591234 -183445924 - AluSx SINE Alu -2 310 1 301 283 83 56 chr3 34592029 34592209 -183444949 + MIR SINE MIR 49 233 -29 611 283 31 26 chr3 34593202 34593428 -183443730 + L2 LINE L2 3005 3231 -82 5544 48 0 0 chr3 34594848 34595521 -183441637 - L1PA5 LINE L1 0 6154 5482 24 0 0 0 chr3 34595678 34595702 -183441456 + AT_rich Low_complexity Low_complexity 1 24 0 2243 103 169 0 chr3 34595702 34596111 -183441047 - L1MA5 LINE L1 -6 6294 5817 875 176 6 6 chr3 34596133 34596292 -183440866 - MER2 DNA MER2_type -186 159 1 611 175 33 38 chr3 34596294 34596477 -183440681 - L1M1 LINE L1 -3927 2805 2624 9104 181 17 8 chr3 34596482 34599900 -183437258 - L1PB1 LINE L1 -1 6866 3416 2177 141 8 32 chr3 34599897 34600274 -183436884 - L1PB1 LINE L1 -5860 1003 636 * 1078 138 53 0 chr3 34600276 34600464 -183436694 - L1PB1 LINE L1 -6663 200 3 6866 260 42 22 chr3 34600467 34601147 -183436011 - L1M1 LINE L1 -4089 2643 1978 399 21 0 0 chr3 34601147 34601195 -183435963 + (TG)n Simple_repeat Simple_repeat 2 49 0 6866 260 42 22 chr3 34601195 34603052 -183434106 - L1M1 LINE L1 -4754 1978 391 1229 308 22 21 chr3 34603058 34603668 -183433490 - L1M3de LINE L1 -5593 1060 2 25 0 0 0 chr3 34603676 34603701 -183433457 + AT_rich Low_complexity Low_complexity 1 25 0 343 281 40 49 chr3 34604711 34605048 -183432110 + L1MEd LINE L1 1004 1226 -4893 329 352 50 5 chr3 34605053 34605252 -183431906 + HAL1 LINE L1 1458 1665 -842 541 273 110 35 chr3 34605788 34606363 -183430795 + L1MC5 LINE L1 7311 7928 -33 215 79 26 0 chr3 34606752 34606790 -183430368 + (TA)n Simple_repeat Simple_repeat 1 39 0 313 326 49 0 chr3 34606820 34606964 -183430194 + L1MEd LINE L1 2717 2867 -3262 306 329 62 33 chr3 34606985 34607195 -183429963 + L1MEd LINE L1 3255 3470 -2659 330 297 117 23 chr3 34607384 34607512 -183429646 + L1MEd LINE L1 3706 3845 -2284 526 291 98 37 chr3 34607533 34608107 -183429051 + L1MEd LINE L1 3911 4519 -1610 330 67 0 0 chr3 34608161 34608206 -183428952 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr3 34608257 34608286 -183428872 + AT_rich Low_complexity Low_complexity 1 29 0 3531 44 0 5 chr3 34608306 34608742 -183428416 - L1PA5 LINE L1 -1 6153 5720 344 303 40 34 chr3 34608742 34608917 -183428241 + L1MEd LINE L1 4655 4830 -1299 482 274 107 19 chr3 34609085 34609300 -183427858 + L1MEd LINE L1 5089 5322 -807 1758 78 4 0 chr3 34609350 34609592 -183427566 + L1PA13 LINE L1 5920 6162 -1 22 35 0 0 chr3 34610362 34610391 -183426767 + AT_rich Low_complexity Low_complexity 1 29 0 42618 47 3 17 chr3 34611177 34617420 -183419738 - L1PA4 LINE L1 -2 6153 1 500 235 88 74 chr3 34618225 34618442 -183418716 - MLT1J LTR MaLR -2 509 290 556 268 34 39 chr3 34618485 34618690 -183418468 - MLT1J LTR MaLR -297 214 11 366 275 17 17 chr3 34618942 34619062 -183418096 + LTR33 LTR ERVL 327 446 -75 558 214 10 0 chr3 34619267 34619370 -183417788 - MER5A DNA MER1_type 0 189 86 5430 115 34 10 chr3 34619377 34620313 -183416845 - L1PB2 LINE L1 0 6151 5214 656 232 0 1 chr3 34620310 34620493 -183416665 + L1PB2 LINE L1 5049 5229 -917 * 277 100 0 0 chr3 34620501 34620541 -183416617 - L1MA1 LINE L1 -7 6295 6256 311 100 0 0 chr3 34620541 34620581 -183416577 - MER5A DNA MER1_type -149 40 1 202 247 56 0 chr3 34621322 34621411 -183415747 + (TA)n Simple_repeat Simple_repeat 1 94 0 587 200 0 17 chr3 34622774 34622889 -183414269 - L2 LINE L2 0 3313 3201 272 295 62 36 chr3 34623389 34623501 -183413657 + L2 LINE L2 3158 3272 0 444 305 0 40 chr3 34623564 34623741 -183413417 - MIR SINE MIR -11 251 82 432 289 74 38 chr3 34624073 34624392 -183412766 + L1MC4a LINE L1 5635 5822 -340 5223 169 15 11 chr3 34674876 34675983 -183361175 + L1PB4 LINE L1 4364 5485 -671 2109 91 0 4 chr3 34675983 34676257 -183360901 + AluY SINE Alu 23 295 -16 5223 169 15 11 chr3 34676257 34676924 -183360234 + L1PB4 LINE L1 5485 6148 -8 2425 57 7 7 chr3 34676934 34677233 -183359925 + AluY SINE Alu 1 299 -12 2380 167 21 15 chr3 34677238 34677711 -183359447 - L1MA7 LINE L1 -145 6146 5671 1160 149 70 9 chr3 34677715 34677929 -183359229 - THE1B LTR MaLR -137 227 1 11708 95 6 2 chr3 34677929 34679503 -183357655 - THE1B-int LTR MaLR 0 1580 1 2040 131 98 15 chr3 34679503 34679839 -183357319 - THE1B LTR MaLR 0 364 1 830 298 86 32 chr3 34680294 34680508 -183356650 + LTR16C LTR ERVL 36 237 -254 1783 197 65 18 chr3 34680508 34680954 -183356204 - MLT1C LTR MaLR 0 467 1 830 298 86 32 chr3 34680954 34681172 -183355986 + LTR16C LTR ERVL 237 491 0 221 366 14 0 chr3 34682345 34682416 -183354742 + L2 LINE L2 3201 3272 0 273 320 162 17 chr3 34683286 34683509 -183353649 - MIR SINE MIR -1 261 2 3731 158 29 6 chr3 34683615 34684304 -183352854 - MER50 LTR ERV1 -23 711 7 592 312 63 61 chr3 34685516 34686022 -183351136 + MLT1K LTR MaLR 76 582 -6 890 221 103 0 chr3 34686146 34686341 -183350817 + MER20 DNA MER1_type 1 215 -4 266 282 107 19 chr3 34686405 34686508 -183350650 - L2 LINE L2 -1 3271 3160 186 43 0 0 chr3 34686776 34686799 -183350359 + (T)n Simple_repeat Simple_repeat 1 23 0 258 308 106 0 chr3 34687928 34688032 -183349126 - MIR SINE MIR 0 262 148 1442 216 51 100 chr3 34688040 34688801 -183348357 - MER49 LTR ERV1 -28 895 1 4872 175 17 5 chr3 34688909 34690559 -183346599 - L1PB4 LINE L1 0 6156 4492 1671 52 0 44 chr3 34690670 34690899 -183346259 + LTR17 LTR ERV1 108 326 -454 205 214 34 22 chr3 34691448 34691537 -183345621 + (TTATA)n Simple_repeat Simple_repeat 4 93 0 29 84 0 0 chr3 34691538 34691609 -183345549 + AT_rich Low_complexity Low_complexity 1 71 0 187 80 23 68 chr3 34691630 34691718 -183345440 + (TAA)n Simple_repeat Simple_repeat 3 86 0 418 265 234 4 chr3 34691793 34692050 -183345108 - L1ME3A LINE L1 -48 6122 5807 468 285 19 5 chr3 34692063 34692270 -183344888 - L1M4 LINE L1 -3404 2742 2533 228 282 56 0 chr3 34692270 34692341 -183344817 - MIR3 SINE MIR -24 184 110 539 291 19 0 chr3 34692352 34692510 -183344648 - MIR SINE MIR -10 252 92 195 243 29 71 chr3 34692590 34692660 -183344498 - L2 LINE L2 -6 3266 3200 396 0 0 0 chr3 34693684 34693728 -183343430 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 629 226 0 22 chr3 34694342 34694479 -183342679 + LTR16A LTR ERVL 315 448 -2 231 341 40 0 chr3 34696377 34696503 -183340655 - L1ME3A LINE L1 -1997 5811 5681 1997 142 19 45 chr3 34696622 34696996 -183340162 - THE1B LTR MaLR 0 364 1 327 351 83 66 chr3 34697041 34697403 -183339755 + L2 LINE L2 2853 3220 -52 3849 177 42 7 chr3 34698326 34699467 -183337691 - L1MB3 LINE L1 -143 6040 4855 875 325 13 24 chr3 34699484 34699862 -183337296 + L1PA16 LINE L1 788 1161 -6413 12114 217 40 30 chr3 34700538 34701388 -183335770 + L1PA16 LINE L1 2182 3022 -4582 2245 117 144 5 chr3 34701388 34701763 -183335395 + MSTA LTR MaLR 2 428 0 12114 217 40 30 chr3 34701763 34702011 -183335147 + L1PA16 LINE L1 3022 3266 -4338 1625 184 3 55 chr3 34702011 34702338 -183334820 - AluJb SINE Alu -2 310 1 12114 217 40 30 chr3 34702338 34706564 -183330594 + L1PA16 LINE L1 3266 7601 -3 419 236 32 8 chr3 34706559 34706682 -183330476 - L1MB3 LINE L1 -1286 4860 4735 * 35189 85 15 15 chr3 34706678 34712819 -183324339 - L1PA6 LINE L1 -4 6150 11 1863 200 23 40 chr3 34712837 34712900 -183324258 - L1MB3 LINE L1 -1392 4754 4691 691 164 8 8 chr3 34712900 34713028 -183324130 - L1MC1 LINE L1 0 6333 6206 1863 200 23 40 chr3 34713028 34713534 -183323624 - L1MB3 LINE L1 -1455 4691 4195 346 320 148 8 chr3 34713546 34713911 -183323247 - L1MC1 LINE L1 -1992 5816 5401 2698 240 30 72 chr3 34713977 34714781 -183322377 - L1ME1 LINE L1 -5 6230 5394 252 0 0 0 chr3 34714781 34714809 -183322349 + (TG)n Simple_repeat Simple_repeat 1 28 0 2698 240 30 72 chr3 34714809 34715831 -183321327 - L1ME1 LINE L1 -841 5394 2582 561 275 73 44 chr3 34715821 34716301 -183320857 - L1ME1 LINE L1 -4189 2207 1714 * 216 0 0 0 chr3 34718036 34718060 -183319098 + (T)n Simple_repeat Simple_repeat 1 24 0 484 300 33 46 chr3 34718153 34718393 -183318765 - L2 LINE L2 -4 3309 3073 207 219 0 0 chr3 34719240 34719281 -183317877 + (TA)n Simple_repeat Simple_repeat 2 42 0 1724 161 51 46 chr3 34719980 34720353 -183316805 + THE1C LTR MaLR 1 375 0 2335 121 0 0 chr3 34720416 34720723 -183316435 - AluSg SINE Alu -3 307 1 361 355 91 0 chr3 34720723 34720909 -183316249 - MIR SINE MIR -58 204 2 378 276 51 29 chr3 34721091 34721373 -183315785 + L1M3c LINE L1 165 890 -5321 726 92 0 84 chr3 34721380 34721511 -183315647 - MLT2A2 LTR ERVL -332 121 2 1165 199 8 34 chr3 34721513 34721805 -183315353 + L1MA9 LINE L1 4562 4846 -1300 2056 164 140 0 chr3 34721805 34722119 -183315039 + L1MA9 LINE L1 5784 6185 -127 210 37 0 0 chr3 34722119 34722146 -183315012 + (CA)n Simple_repeat Simple_repeat 2 28 0 2056 164 140 0 chr3 34722146 34722295 -183314863 + L1MA9 LINE L1 6185 6312 0 2262 118 51 25 chr3 34722335 34722690 -183314468 + THE1B LTR MaLR 1 364 0 1597 176 61 58 chr3 34722719 34723082 -183314076 + MLT1A1 LTR MaLR 2 365 0 180 200 0 0 chr3 34723947 34723987 -183313171 + GA-rich Low_complexity Low_complexity 2 41 0 216 345 119 5 chr3 34724570 34724764 -183312394 - MIR SINE MIR -7 255 40 412 237 35 0 chr3 34724784 34724898 -183312260 + MLT1H1 LTR MaLR 1 118 -477 5956 78 12 12 chr3 34724898 34725744 -183311414 + L1MA1 LINE L1 5449 6294 -8 1149 130 0 0 chr3 34725764 34725918 -183311240 - AluSg/x SINE Alu -27 285 132 21 0 0 0 chr3 34725918 34725939 -183311219 + AT_rich Low_complexity Low_complexity 1 21 0 1249 259 50 41 chr3 34725945 34726362 -183310796 + MLT1H1 LTR MaLR 69 489 -66 1776 177 14 0 chr3 34726420 34726703 -183310455 + AluJo SINE Alu 1 287 -25 387 311 86 43 chr3 34728206 34728415 -183308743 + MIR SINE MIR 2 219 -43 296 323 50 0 chr3 34728760 34728859 -183308299 + L2 LINE L2 3209 3312 -1 2021 113 42 58 chr3 34728957 34729337 -183307821 + THE1C LTR MaLR 1 374 -1 477 148 0 0 chr3 34729337 34729418 -183307740 + (TTCC)n Simple_repeat Simple_repeat 3 83 0 392 218 323 8 chr3 34729683 34729816 -183307342 + MER5A DNA MER1_type 15 189 0 381 197 0 14 chr3 34729893 34729964 -183307194 - LTR35 LTR ERV1 -43 575 506 213 39 0 0 chr3 34729967 34729993 -183307165 + (GA)n Simple_repeat Simple_repeat 1 26 0 250 196 0 0 chr3 34730112 34730163 -183306995 - LTR43 LTR ERV1 -325 277 227 3281 232 131 3 chr3 34730173 34731262 -183305896 + L1PB1 LINE L1 6 1383 -5480 * 12478 191 17 8 chr3 34731260 34734746 -183302412 + L1PB1 LINE L1 2984 6507 -360 300 70 0 0 chr3 34734746 34734789 -183302369 + (TA)n Simple_repeat Simple_repeat 2 44 0 12478 191 17 8 chr3 34734789 34735150 -183302008 + L1PB1 LINE L1 6507 6863 -4 30 27 0 0 chr3 34737327 34737364 -183299794 + AT_rich Low_complexity Low_complexity 1 37 0 1508 99 0 0 chr3 34739206 34739398 -183297760 - AluSx SINE Alu -81 231 40 1628 150 74 9 chr3 34739416 34739742 -183297416 + MER47A DNA MER2_type 18 364 -2 369 0 0 0 chr3 34739808 34739849 -183297309 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2925 61 0 12 chr3 34739850 34740261 -183296897 - LTR7 LTR ERV1 -44 406 1 25530 90 10 12 chr3 34740261 34744908 -183292250 - HERVH LTR ERV1 0 7713 3139 14223 101 10 22 chr3 34744887 34747669 -183289489 - HERVH LTR ERV1 -4718 2995 2 * 731 78 0 10 chr3 34747671 34747774 -183289384 - LTR7 LTR ERV1 -2 448 347 756 197 7 14 chr3 34747776 34747923 -183289235 - MER20 DNA MER1_type -71 148 3 592 277 136 38 chr3 34748326 34748723 -183288435 - MLT1J2 LTR MaLR -2 448 13 295 218 182 9 chr3 34750188 34750412 -183286746 - L1ME4a LINE L1 -50 6071 5794 264 293 20 0 chr3 34750430 34750529 -183286629 - L1ME4a LINE L1 -405 5716 5616 2476 54 37 0 chr3 34750996 34751294 -183285864 + AluY SINE Alu 1 309 -2 308 319 0 0 chr3 34751514 34751586 -183285572 - L2 LINE L2 -16 3256 3185 517 86 0 0 chr3 34752017 34752087 -183285071 + AluS SINE Alu 1 70 -242 858 123 0 0 chr3 34752087 34752217 -183284941 + AluSp/q SINE Alu 174 303 -10 246 116 0 0 chr3 34753139 34753182 -183283976 + (TA)n Simple_repeat Simple_repeat 2 44 0 2753 188 45 22 chr3 34754111 34754288 -183282870 - L1MC4 LINE L1 0 8042 7870 2154 151 14 22 chr3 34754288 34754653 -183282505 + THE1B LTR MaLR 1 362 -2 2753 188 45 22 chr3 34754653 34755097 -183282061 - L1MC4 LINE L1 -172 7870 7407 909 210 0 0 chr3 34755183 34755350 -183281808 - FRAM SINE Alu -9 167 1 502 301 78 45 chr3 34755368 34755677 -183281481 - L1ME LINE L1 -401 5720 5402 * 14312 192 31 10 chr3 34755670 34761039 -183276119 - L1PB1 LINE L1 -1 6866 1392 784 229 29 24 chr3 34761016 34761226 -183275932 - L1PB1 LINE L1 -6647 216 6 * 2263 92 0 7 chr3 34761959 34762264 -183274894 - AluY SINE Alu -8 303 1 534 16 0 0 chr3 34762307 34762370 -183274788 + (CA)n Simple_repeat Simple_repeat 1 63 0 243 103 0 0 chr3 34762370 34762409 -183274749 + (TC)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr3 34763259 34763287 -183273871 + AT_rich Low_complexity Low_complexity 1 28 0 244 292 35 26 chr3 34765091 34765204 -183271954 + L1ME LINE L1 5506 5586 -598 1011 273 61 87 chr3 34765204 34765742 -183271416 - MLT1H1 LTR MaLR 0 555 32 372 251 101 14 chr3 34765873 34766018 -183271140 + L1ME LINE L1 5669 5841 -333 2288 107 0 0 chr3 34766271 34766579 -183270579 - AluSq SINE Alu -5 308 1 390 236 28 19 chr3 34767285 34767391 -183269767 + LTR33 LTR ERVL 18 124 -397 263 292 150 0 chr3 34768874 34768994 -183268164 - MLT1L LTR MaLR -477 138 1 369 319 65 18 chr3 34768994 34769163 -183267995 - MIR SINE MIR -21 241 65 285 283 44 35 chr3 34769184 34769297 -183267861 - L2 LINE L2 -36 3277 3164 2771 65 3 0 chr3 34771923 34772277 -183264881 - L1PA7 LINE L1 -1 6153 5799 4559 97 3 3 chr3 34772278 34772940 -183264218 + L1P LINE L1 4397 5058 -1088 2238 310 117 27 chr3 34772940 34774346 -183262812 + L2 LINE L2 1521 3058 -255 246 277 10 40 chr3 34776344 34776445 -183260713 + L1ME3A LINE L1 5689 5786 -2022 721 217 72 0 chr3 34776722 34776874 -183260284 - FRAM SINE Alu -5 171 9 2177 174 38 33 chr3 34776881 34777307 -183259851 + MSTA LTR MaLR 1 428 0 195 42 0 0 chr3 34777753 34777777 -183259381 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 256 321 37 0 chr3 34778029 34778110 -183259048 - MIR SINE MIR -109 153 70 21 0 0 0 chr3 34778149 34778170 -183258988 + AT_rich Low_complexity Low_complexity 1 21 0 272 250 22 11 chr3 34778594 34778686 -183258472 - MLT1L LTR MaLR -10 605 513 21 0 0 0 chr3 34780294 34780315 -183256843 + AT_rich Low_complexity Low_complexity 1 21 0 186 333 56 0 chr3 34780945 34781017 -183256141 + L3b LINE CR1 1170 1245 -338 226 278 174 43 chr3 34781342 34781457 -183255701 - MIR3 SINE MIR -65 143 14 537 303 48 19 chr3 34781701 34781909 -183255249 + MIR SINE MIR 49 262 0 1073 244 30 118 chr3 34782021 34782452 -183254706 + MLT1I LTR MaLR 12 404 -5 21 0 0 0 chr3 34783199 34783220 -183253938 + AT_rich Low_complexity Low_complexity 1 21 0 272 281 79 0 chr3 34784416 34784505 -183252653 - MIR SINE MIR -69 139 44 544 276 35 12 chr3 34784712 34784882 -183252276 + MIR SINE MIR 12 185 -77 268 360 18 0 chr3 34785297 34785411 -183251747 - MIR3 SINE MIR -12 196 81 812 159 118 18 chr3 34786141 34786311 -183250847 - MER5A DNA MER1_type -1 188 2 184 245 75 0 chr3 34788208 34788261 -183248897 + MIR SINE MIR 173 229 -33 552 290 86 26 chr3 34789223 34789492 -183247666 + L1ME3A LINE L1 5877 6161 -9 1064 246 88 13 chr3 34790182 34790556 -183246602 + LTR48B LTR ERV1 243 644 0 2841 176 72 28 chr3 34790558 34791138 -183246020 + LTR48B-int LTR ERV1 1 606 -5725 15013 230 30 19 chr3 34791155 34793510 -183243648 - L1PA15 LINE L1 -4 7599 5271 1842 123 120 30 chr3 34793510 34793843 -183243315 + THE1B LTR MaLR 1 363 -1 15013 230 30 19 chr3 34793843 34797428 -183239730 - L1PA15 LINE L1 -2332 5271 1587 607 337 14 24 chr3 34797432 34797723 -183239435 - L1PA15 LINE L1 -7178 403 116 1314 209 14 87 chr3 34797724 34798068 -183239090 + LTR48B-int LTR ERV1 597 915 -5416 467 200 50 67 chr3 34798158 34798278 -183238880 + LTR48B-int LTR ERV1 1084 1201 -5130 326 239 28 0 chr3 34798286 34798357 -183238801 + tRNA-Glu-GAG tRNA tRNA 3 75 0 207 333 0 0 chr3 34799048 34799114 -183238044 + GA-rich Low_complexity Low_complexity 1 66 0 1828 177 10 6 chr3 34799872 34800183 -183236975 + AluJb SINE Alu 1 312 0 2832 170 55 96 chr3 34800299 34801016 -183236142 + LTR48B-int LTR ERV1 1283 1961 -4370 198 0 0 0 chr3 34801016 34801038 -183236120 + (CG)n Simple_repeat Simple_repeat 1 22 0 2832 170 55 96 chr3 34801038 34801173 -183235985 + LTR48B-int LTR ERV1 1961 2100 -4231 696 163 53 74 chr3 34801165 34801369 -183235789 + LTR48B-int LTR ERV1 1150 3108 -265 * 293 216 9 103 chr3 34801379 34801495 -183235663 + LTR48B-int LTR ERV1 3281 3385 -2561 7506 189 64 59 chr3 34801639 34802152 -183235006 + LTR48B-int LTR ERV1 3721 4230 -2101 10760 91 4 4 chr3 34802152 34802494 -183234664 - L1PA8 LINE L1 -7 6165 5824 222 37 0 0 chr3 34802494 34802521 -183234637 + (TA)n Simple_repeat Simple_repeat 1 27 0 10760 91 4 4 chr3 34802521 34804458 -183232700 - L1PA8 LINE L1 -347 5825 3849 7506 189 64 59 chr3 34804458 34806354 -183230804 + LTR48B-int LTR ERV1 4230 6173 -158 416 138 126 46 chr3 34806450 34806537 -183230621 + LTR48B LTR ERV1 3 96 -548 2141 196 81 56 chr3 34806548 34807176 -183229982 + LTR48B LTR ERV1 1 644 0 453 258 78 36 chr3 34807286 34807453 -183229705 + MER5A DNA MER1_type 16 189 0 543 191 113 43 chr3 34808521 34808662 -183228496 + MER20 DNA MER1_type 45 195 -24 11066 34 1 1 chr3 34859440 34860867 -183176291 - L1P LINE L1 -2182 3964 2537 7454 32 0 1 chr3 34860864 34861810 -183175348 + L1P LINE L1 1607 2551 -3595 * 605 326 54 4 chr3 34862141 34862402 -183174756 + MLT1I LTR MaLR 27 300 -109 2563 166 125 22 chr3 34862429 34863012 -183174146 - MER73 LTR ERVL 0 644 2 252 348 33 0 chr3 34863076 34863168 -183173990 - L2 LINE L2 0 3272 3178 518 179 41 41 chr3 34863562 34863707 -183173451 + MLT1I LTR MaLR 439 583 -7 711 210 68 6 chr3 34864132 34864308 -183172850 - MER5A DNA MER1_type 0 189 3 227 302 47 0 chr3 34864325 34864411 -183172747 - MER117 DNA MER1_type -19 178 89 396 0 0 0 chr3 34864815 34864859 -183172299 + (CA)n Simple_repeat Simple_repeat 1 44 0 692 282 56 9 chr3 34865664 34865877 -183171281 - MIR SINE MIR 0 262 40 2001 129 7 23 chr3 34866279 34866582 -183170576 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr3 34866683 34866704 -183170454 + AT_rich Low_complexity Low_complexity 1 21 0 396 342 86 45 chr3 34866759 34867177 -183169981 + L2 LINE L2 237 671 -2643 182 383 94 0 chr3 34867200 34867328 -183169830 + L2 LINE L2 1003 1142 -2172 645 273 134 4 chr3 34867387 34867625 -183169533 - L2 LINE L2 -500 2814 2546 1908 135 7 21 chr3 34868589 34868878 -183168280 + AluSg SINE Alu 1 285 -25 396 167 0 0 chr3 34869290 34869362 -183167796 + (TA)n Simple_repeat Simple_repeat 1 72 0 1162 235 61 12 chr3 34870522 34870850 -183166308 + MER2 DNA MER2_type 1 344 0 284 261 39 23 chr3 34871596 34871726 -183165432 + L1M4 LINE L1 2932 3063 -3083 238 281 146 0 chr3 34872126 34872208 -183164950 + MER5B DNA MER1_type 8 101 -77 1939 115 35 45 chr3 34873119 34873432 -183163726 + AluSx SINE Alu 1 310 -2 379 221 0 0 chr3 34873440 34873517 -183163641 + AluJ/FRAM SINE Alu 226 302 0 350 304 32 0 chr3 34873529 34873654 -183163504 + L1MEc LINE L1 1032 1160 -5236 715 368 97 2 chr3 34873654 34874108 -183163050 - ERVL LTR ERVL -3210 2554 2058 904 160 5 60 chr3 34874186 34874386 -183162772 + L1MA8 LINE L1 5966 6154 -137 1264 125 6 0 chr3 34874386 34874562 -183162596 + AluSp SINE Alu 106 282 -31 644 159 8 0 chr3 34874562 34874694 -183162464 + L1MA8 LINE L1 6154 6286 -5 266 369 34 6 chr3 34874729 34874908 -183162250 - ERVL LTR ERVL -3699 1955 1772 2169 115 0 7 chr3 34876135 34876440 -183160718 + AluSx SINE Alu 1 303 -9 1057 99 0 44 chr3 34878132 34878314 -183158844 + L1MA1 LINE L1 6129 6302 0 1753 187 14 14 chr3 34878322 34878686 -183158472 + L1MD1 LINE L1 5861 6224 -18 24 67 0 0 chr3 34878727 34878772 -183158386 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 34878825 34878846 -183158312 + AT_rich Low_complexity Low_complexity 1 21 0 201 227 0 0 chr3 34878967 34879011 -183158147 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 265 325 0 12 chr3 34879878 34879958 -183157200 - L2 LINE L2 -4 3268 3190 9792 30 0 0 chr3 34880162 34882099 -183155059 + L1PA3 LINE L1 4215 6152 -3 379 285 15 15 chr3 34883986 34884116 -183153042 - MER117 DNA MER1_type -65 132 3 213 357 48 24 chr3 34884280 34884406 -183152752 + L2 LINE L2 3140 3268 -4 567 127 25 0 chr3 34884592 34884671 -183152487 + FRAM SINE Alu 61 141 -35 551 289 13 0 chr3 34885641 34885790 -183151368 + ERVL-C1 LTR ERVL 552 702 -5062 1732 296 62 15 chr3 34885827 34886631 -183150527 + ERVL-C1 LTR ERVL 813 1636 -4018 2072 236 10 20 chr3 34886632 34887128 -183150030 + ERVL-C1 LTR ERVL 3762 4252 -1512 437 278 9 0 chr3 34887142 34887250 -183149908 - ERVL LTR ERVL -1384 4380 4272 1306 229 15 15 chr3 34887250 34887577 -183149581 + MLT1A1 LTR MaLR 28 354 -11 829 199 13 35 chr3 34887699 34887925 -183149233 + ERVL-C1 LTR ERVL 5534 5754 -10 634 230 0 30 chr3 34887927 34888092 -183149066 + MLT2C1 LTR ERVL 1 160 -237 525 276 78 10 chr3 34887974 34888166 -183148992 + MLT1E3 LTR MaLR 64 268 -356 * 23 0 0 0 chr3 34888316 34888339 -183148819 + AT_rich Low_complexity Low_complexity 1 23 0 386 69 17 0 chr3 34888358 34888416 -183148742 + (TG)n Simple_repeat Simple_repeat 2 60 0 321 256 39 0 chr3 34888466 34888544 -183148614 - LTR50 LTR ERVL -714 81 1 282 219 47 0 chr3 34889267 34889331 -183147827 - Charlie8 DNA MER1_type -1001 1416 1350 * 443 224 10 0 chr3 34889329 34889427 -183147731 + MLT2C1 LTR ERVL 21 119 -278 * 543 262 84 19 chr3 34889418 34889632 -183147526 - Charlie8 DNA MER1_type -2152 265 38 29 28 0 0 chr3 34890841 34890877 -183146281 + AT_rich Low_complexity Low_complexity 1 36 0 2243 74 0 14 chr3 34891472 34891757 -183145401 - AluY SINE Alu -30 281 1 253 347 50 8 chr3 34891773 34891894 -183145264 + MIR SINE MIR 19 144 -118 324 239 64 18 chr3 34892233 34892342 -183144816 - MLT1H LTR MaLR 0 549 436 651 226 67 16 chr3 34892536 34892753 -183144405 - MLT1H LTR MaLR -310 239 4 450 265 0 0 chr3 34892756 34892854 -183144304 - MIR SINE MIR -62 146 49 494 283 71 38 chr3 34894699 34894911 -183142247 - MIR SINE MIR -14 248 30 2504 122 0 11 chr3 34895704 34896072 -183141086 - THE1B LTR MaLR 0 364 1 183 42 0 0 chr3 34896120 34896144 -183141014 + (TC)n Simple_repeat Simple_repeat 1 24 0 298 234 26 0 chr3 34896325 34896402 -183140756 - MARNA DNA Mariner -246 340 262 1218 225 103 0 chr3 34896522 34896833 -183140325 + MER2 DNA MER2_type 1 343 -1 287 329 56 40 chr3 34897438 34897687 -183139471 - LTR16B LTR ERVL -175 289 37 269 291 71 39 chr3 34898683 34898810 -183138348 - MIR SINE MIR -57 151 21 237 254 51 0 chr3 34898857 34898916 -183138242 + L2 LINE L2 3208 3269 -3 21 0 0 0 chr3 34899459 34899480 -183137678 + AT_rich Low_complexity Low_complexity 1 21 0 708 216 8 0 chr3 34899487 34899612 -183137546 - FLAM_A SINE Alu -6 127 2 979 229 52 16 chr3 34899683 34899988 -183137170 + L1ME2 LINE L1 5726 6041 -123 284 164 0 0 chr3 34899982 34900037 -183137121 + L1ME3 LINE L1 6100 6154 -8 * 198 231 154 22 chr3 34900494 34900585 -183136573 + MIR SINE MIR 149 251 -11 2192 111 0 7 chr3 34900624 34900921 -183136237 - AluSg SINE Alu -15 295 1 2431 86 3 0 chr3 34901253 34901554 -183135604 - AluSp SINE Alu -11 302 1 349 313 11 57 chr3 34902160 34902336 -183134822 + MIR SINE MIR 13 180 -82 180 0 0 0 chr3 34902353 34902373 -183134785 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2342 84 0 3 chr3 34902380 34902677 -183134481 - AluY SINE Alu -15 296 1 2301 98 55 0 chr3 34902679 34903025 -183134133 - L1PA13 LINE L1 -5 6158 5794 5400 103 1 0 chr3 34903036 34903785 -183133373 + L1P LINE L1 11 760 -5386 299 276 43 86 chr3 34903934 34904097 -183133061 - MLT1F1 LTR MaLR -302 265 110 371 278 111 14 chr3 34904285 34904429 -183132729 - MIR3 SINE MIR -30 178 21 559 271 32 7 chr3 34904433 34904588 -183132570 + MIR SINE MIR 92 250 -12 1535 276 91 79 chr3 34904915 34905676 -183131482 + L2 LINE L2 2192 2991 -322 2248 110 3 3 chr3 34905676 34905986 -183131172 + AluSx SINE Alu 3 312 0 1535 276 91 79 chr3 34905986 34906313 -183130845 + L2 LINE L2 2991 3312 -1 365 371 38 0 chr3 34906475 34906661 -183130497 + L2 LINE L2 2259 2451 -863 731 327 62 62 chr3 34906751 34907335 -183129823 - L2 LINE L2 -2150 1164 581 209 370 20 10 chr3 34907412 34907512 -183129646 + L2 LINE L2 2538 2638 -676 255 280 47 13 chr3 34907775 34907927 -183129231 - MER20B DNA MER1_type 0 219 57 377 86 17 0 chr3 34909750 34909808 -183127350 + (TC)n Simple_repeat Simple_repeat 2 60 0 572 199 210 32 chr3 34910379 34910565 -183126593 + MER20 DNA MER1_type 1 219 0 348 262 48 0 chr3 34910599 34910683 -183126475 + MIR SINE MIR 63 150 -112 181 396 93 27 chr3 34911956 34912181 -183124977 + L2 LINE L2 2934 3173 -99 247 345 24 12 chr3 34913538 34913622 -183123536 - L2 LINE L2 -26 3246 3162 1656 192 6 28 chr3 34913801 34914118 -183123040 - AluJb SINE Alu -2 310 1 1829 154 143 16 chr3 34914461 34914838 -183122320 + MSTA LTR MaLR 1 425 -3 5509 186 10 3 chr3 34915054 34916124 -183121034 + L1P LINE L1 3491 4568 -1578 489 288 76 34 chr3 34916234 34916470 -183120688 + MIR SINE MIR 17 262 0 194 301 119 42 chr3 34916643 34916786 -183120372 + L2 LINE L2 3160 3313 0 187 310 0 35 chr3 34916850 34916908 -183120250 + L2 LINE L2 3209 3264 -8 200 239 43 0 chr3 34917719 34917765 -183119393 - MER91A DNA MER1_type -131 65 18 * 330 225 35 92 chr3 34917746 34917888 -183119270 + MIR SINE MIR 9 142 -120 1483 244 64 20 chr3 34918224 34918663 -183118495 + L1ME3 LINE L1 5682 6139 -23 275 0 29 0 chr3 34918730 34918765 -183118393 + (TAGA)n Simple_repeat Simple_repeat 4 39 0 207 325 8 83 chr3 34920182 34920233 -183116925 - MIR SINE MIR -68 140 87 1022 198 5 0 chr3 34920233 34920420 -183116738 + MER5A DNA MER1_type 1 188 -1 207 325 8 83 chr3 34920420 34920488 -183116670 - MIR SINE MIR -121 87 30 620 304 110 10 chr3 34920889 34921188 -183115970 - MER102a DNA MER1_type -1 329 1 363 248 105 9 chr3 34922873 34922978 -183114180 - MIR3 SINE MIR -47 161 47 232 322 59 17 chr3 34923193 34923311 -183113847 + MIR SINE MIR 59 181 -81 755 206 72 12 chr3 34924607 34925056 -183112102 - L1ME3A LINE L1 -221 6343 5826 198 0 0 0 chr3 34925098 34925120 -183112038 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1677 131 43 46 chr3 34925121 34925403 -183111755 - AluSq SINE Alu -32 281 1 288 0 0 0 chr3 34925409 34925441 -183111717 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr3 34925471 34925492 -183111666 + AT_rich Low_complexity Low_complexity 1 21 0 42898 33 21 1 chr3 34925494 34931526 -183105632 - L1PA2 LINE L1 0 6155 1 466 305 40 44 chr3 34931528 34931800 -183105358 - L1ME3A LINE L1 -961 5579 5309 1004 282 88 52 chr3 34931801 34932607 -183104551 - L1ME3A LINE L1 -1335 5205 4371 657 304 97 10 chr3 34932770 34933234 -183103924 - L1MEc LINE L1 -4500 2040 1565 2862 96 2 0 chr3 34934155 34934549 -183102609 + L1PA8 LINE L1 5776 6170 -2 595 247 108 86 chr3 34935626 34936274 -183100884 - L1ME4a LINE L1 -12 6109 5448 2296 73 3 7 chr3 34937420 34937721 -183099437 + AluY SINE Alu 2 301 -10 249 331 47 0 chr3 34937830 34937957 -183099201 - L1ME LINE L1 -460 5661 5529 1539 190 53 9 chr3 34937971 34938292 -183098866 + MER2 DNA MER2_type 1 335 -10 43001 30 21 1 chr3 34938776 34944804 -183092354 - L1HS LINE L1 0 6155 4 418 140 43 0 chr3 34945318 34945411 -183091747 + GA-rich Low_complexity Low_complexity 3 99 0 330 245 82 20 chr3 34946222 34946320 -183090838 + MIR SINE MIR 36 139 -123 1889 131 139 18 chr3 34946773 34947110 -183090048 - MER83B LTR ERV1 0 378 1 1037 315 52 26 chr3 34947131 34947557 -183089601 - ERVL LTR ERVL -3478 2286 1850 307 336 21 7 chr3 34947602 34947745 -183089413 - ERVL LTR ERVL -3985 1779 1635 306 206 27 14 chr3 34948016 34948089 -183089069 - LTR33 LTR ERVL -26 495 422 519 17 0 0 chr3 34948480 34948540 -183088618 + (TG)n Simple_repeat Simple_repeat 2 61 0 26 30 0 0 chr3 34948606 34948639 -183088519 + AT_rich Low_complexity Low_complexity 1 33 0 279 0 0 0 chr3 34948912 34948943 -183088215 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 260 13 13 chr3 34949805 34949882 -183087276 + (TTTA)n Simple_repeat Simple_repeat 1 77 0 201 393 0 0 chr3 34949936 34949997 -183087161 - L2 LINE L2 -85 3187 3127 305 285 70 91 chr3 34950499 34950741 -183086417 - MLT1I LTR MaLR -18 391 155 1686 193 3 3 chr3 34950769 34951080 -183086078 + AluJo SINE Alu 1 311 -1 874 260 87 4 chr3 34952012 34952254 -183084904 + MIR SINE MIR 1 262 0 1107 55 0 0 chr3 34952642 34952770 -183084388 + AluY SINE Alu 163 290 -21 22 0 0 0 chr3 34952799 34952821 -183084337 + AT_rich Low_complexity Low_complexity 1 22 0 2864 132 31 50 chr3 34953265 34953652 -183083506 - L1PA16 LINE L1 0 6166 5790 1676 134 0 0 chr3 34953652 34953883 -183083275 - AluJo SINE Alu -81 231 1 2864 132 31 50 chr3 34953883 34954017 -183083141 - L1PA16 LINE L1 -376 5790 5655 525 244 3 22 chr3 34954428 34954611 -183082547 - MLT1I LTR MaLR 0 409 275 392 363 132 16 chr3 34956108 34956480 -183080678 - L2 LINE L2 -639 2675 2261 21 0 0 0 chr3 34957421 34957442 -183079716 + AT_rich Low_complexity Low_complexity 1 21 0 311 281 117 42 chr3 34957803 34958163 -183078995 + L1ME4a LINE L1 5729 6115 -6 383 252 31 84 chr3 34960013 34960145 -183077013 - MLT1E LTR MaLR -421 121 1 183 129 0 0 chr3 34960351 34960382 -183076776 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 345 271 286 0 chr3 34961075 34961215 -183075943 - MER5A DNA MER1_type -2 187 8 256 329 9 72 chr3 34961223 34961445 -183075713 - L2 LINE L2 -4 3309 3102 321 351 9 9 chr3 34961505 34961619 -183075539 - L2 LINE L2 -1 3271 3158 1020 246 58 13 chr3 34961698 34962168 -183074990 + MLT1F1 LTR MaLR 3 567 0 436 309 95 0 chr3 34962198 34962324 -183074834 - L2 LINE L2 -1 3271 3134 26 30 0 0 chr3 34962336 34962369 -183074789 + AT_rich Low_complexity Low_complexity 1 33 0 525 362 86 26 chr3 34962560 34962944 -183074214 - L2 LINE L2 -358 2956 2550 235 365 64 75 chr3 34962986 34963268 -183073890 + L2 LINE L2 2985 3263 -9 445 319 70 25 chr3 34964520 34964677 -183072481 - MIR SINE MIR -76 186 23 540 327 36 5 chr3 34965005 34965225 -183071933 + MER102b DNA MER1_type 85 311 -30 711 274 16 0 chr3 34965416 34965602 -183071556 - MER5A DNA MER1_type 0 189 1 501 17 0 0 chr3 34968038 34968096 -183069062 + (TG)n Simple_repeat Simple_repeat 1 58 0 339 65 0 0 chr3 34968096 34968142 -183069016 + (GA)n Simple_repeat Simple_repeat 2 47 0 1751 199 68 66 chr3 34969435 34969937 -183067221 + MLT1D LTR MaLR 3 505 0 259 222 93 0 chr3 34971234 34971288 -183065870 - L2 LINE L2 -3 3269 3211 181 245 20 0 chr3 34971737 34971786 -183065372 - MIR SINE MIR -78 130 81 243 0 0 0 chr3 34971878 34971905 -183065253 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 28 0 0 0 chr3 34973349 34973377 -183063781 + AT_rich Low_complexity Low_complexity 1 28 0 333 333 42 12 chr3 34974150 34974318 -183062840 - MIR SINE MIR -55 207 35 844 259 28 0 chr3 34974475 34974691 -183062467 + MER58A DNA MER1_type 3 224 0 9799 70 7 0 chr3 34976425 34978510 -183058648 + L1PA6 LINE L1 4046 6153 -1 1589 278 93 25 chr3 34978531 34979060 -183058098 - MLT1G LTR MaLR 0 590 26 292 281 257 12 chr3 34980773 34980944 -183056214 - MIR SINE MIR -16 246 34 544 256 57 34 chr3 34981669 34981992 -183055166 - L1ME LINE L1 -316 5805 5474 602 315 195 22 chr3 34982494 34983382 -183053776 + L2 LINE L2 1614 2654 -660 1045 195 188 11 chr3 34983388 34983660 -183053498 - MLT1D LTR MaLR 0 505 186 1242 191 0 42 chr3 34983662 34983898 -183053260 - AluJb SINE Alu -20 292 67 607 206 168 0 chr3 34983898 34984053 -183053105 - MLT1D LTR MaLR -324 181 1 4178 153 18 11 chr3 34984442 34985185 -183051973 + L1MA4 LINE L1 5269 6016 -284 316 146 49 0 chr3 34985189 34985271 -183051887 + L1MB4 LINE L1 6095 6180 0 21 57 0 0 chr3 34985287 34985322 -183051836 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 34985357 34985382 -183051776 + AT_rich Low_complexity Low_complexity 1 25 0 190 269 0 58 chr3 34986248 34986300 -183050858 - L2 LINE L2 -9 3263 3215 29 0 0 0 chr3 34986326 34986355 -183050803 + AT_rich Low_complexity Low_complexity 1 29 0 259 253 27 13 chr3 34986816 34986891 -183050267 - L1ME LINE L1 -496 5625 5550 344 325 64 16 chr3 34987020 34987208 -183049950 - L1ME LINE L1 -658 5463 5267 1039 265 99 31 chr3 34987342 34987950 -183049208 - HAL1b LINE L1 -283 1065 417 275 233 14 14 chr3 34988567 34988640 -183048518 + CT-rich Low_complexity Low_complexity 2 74 0 34 24 0 0 chr3 34989409 34989450 -183047708 + AT_rich Low_complexity Low_complexity 1 41 0 293 242 127 26 chr3 34989795 34989959 -183047199 + LTR39 LTR ERV1 1 375 -408 1037 248 26 23 chr3 34989999 34990304 -183046854 + MER4D LTR ERV1 455 894 -9 22 0 0 0 chr3 34990507 34990529 -183046629 + AT_rich Low_complexity Low_complexity 1 22 0 314 195 182 0 chr3 34992050 34992127 -183045031 - L2 LINE L2 -982 2332 2242 272 237 141 52 chr3 34992311 34992446 -183044712 - L2 LINE L2 -1222 2092 1946 180 0 0 0 chr3 34992596 34992616 -183044542 + (ATTAG)n Simple_repeat Simple_repeat 4 23 0 438 20 0 0 chr3 34992619 34992670 -183044488 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 405 304 95 46 chr3 34993085 34993268 -183043890 - MIR SINE MIR -23 185 25 424 168 2 24 chr3 34993744 34993844 -183043314 + LTR24B LTR ERV1 3 97 -368 766 258 53 42 chr3 34993882 34994242 -183042916 + LTR24B LTR ERV1 206 569 -7 416 147 67 0 chr3 34994271 34994346 -183042812 + MADE1 DNA Mariner 1 80 0 2268 88 0 7 chr3 34994374 34994670 -183042488 - AluY SINE Alu -17 294 1 1286 174 75 23 chr3 34994687 34994952 -183042206 + MLT1C LTR MaLR 5 283 -184 190 54 27 27 chr3 34994973 34995010 -183042148 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr3 34995205 34995227 -183041931 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 34996651 34996673 -183040485 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 34996780 34996803 -183040355 + AT_rich Low_complexity Low_complexity 1 23 0 533 299 97 40 chr3 34996810 34997409 -183039749 + L1ME4a LINE L1 5478 6110 -11 377 288 112 21 chr3 34998624 34998857 -183038301 - L1ME4a LINE L1 -72 6049 5796 361 309 9 0 chr3 34999133 34999243 -183037915 + MIR SINE MIR 137 247 -15 2409 73 0 10 chr3 35000659 35000961 -183036197 - AluSc SINE Alu -10 299 1 629 206 120 40 chr3 35003041 35003216 -183033942 + MER5A DNA MER1_type 1 189 0 276 212 0 30 chr3 35004045 35004121 -183033037 + AluYb8 SINE Alu 132 192 -116 25 0 0 0 chr3 35004125 35004150 -183033008 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr3 35004163 35004205 -183032953 + AT_rich Low_complexity Low_complexity 1 42 0 1850 264 65 7 chr3 35004825 35005409 -183031749 - L1ME3 LINE L1 -5 6157 5540 31446 95 7 13 chr3 35005620 35011089 -183026069 + L1PA7 LINE L1 719 6153 -1 231 242 121 0 chr3 35011255 35011346 -183025812 - L1ME4a LINE L1 0 6121 6020 484 308 96 20 chr3 35011410 35011754 -183025404 - L1ME4a LINE L1 -2124 5684 5315 377 307 86 29 chr3 35012004 35012284 -183024874 - L1ME4a LINE L1 -1776 4370 4075 24 32 0 0 chr3 35012340 35012371 -183024787 + AT_rich Low_complexity Low_complexity 1 31 0 287 340 9 19 chr3 35012491 35012672 -183024486 - L1ME4a LINE L1 -2309 3837 3656 239 310 14 0 chr3 35013306 35013377 -183023781 + MIR SINE MIR 81 152 -56 213 206 16 32 chr3 35013417 35013480 -183023678 + L2 LINE L2 3248 3309 -4 563 227 51 17 chr3 35014799 35014975 -183022183 + L1MA9 LINE L1 6083 6264 -48 26 30 0 0 chr3 35014984 35015017 -183022141 + AT_rich Low_complexity Low_complexity 1 33 0 480 104 26 0 chr3 35016189 35016266 -183020892 - MADE1 DNA Mariner 0 80 2 819 76 0 17 chr3 35016564 35016683 -183020475 - AluY SINE Alu -5 306 190 375 324 99 6 chr3 35016970 35017152 -183020006 + MIR SINE MIR 54 252 -10 305 175 50 0 chr3 35018325 35018405 -183018753 - L1ME4a LINE L1 -3 6118 6035 8666 27 1 1 chr3 35018563 35020365 -183016793 - L1PA3 LINE L1 0 6155 4354 373 337 107 36 chr3 35020424 35020676 -183016482 - L1ME LINE L1 -345 5776 5507 1820 177 92 16 chr3 35022571 35023005 -183014153 + MLT1C LTR MaLR 1 467 0 31 44 0 0 chr3 35023100 35023145 -183014013 + AT_rich Low_complexity Low_complexity 1 45 0 291 250 73 16 chr3 35023260 35023384 -183013774 - L1ME4a LINE L1 -3447 2699 2569 234 314 105 9 chr3 35024117 35024222 -183012936 + MIR3 SINE MIR 87 201 -7 379 76 0 30 chr3 35026520 35026586 -183010572 + (TA)n Simple_repeat Simple_repeat 2 65 0 204 283 183 25 chr3 35127125 35127245 -182909913 - L2 LINE L2 0 3313 3175 2068 185 4 6 chr3 35128400 35128861 -182908297 - MER89 LTR ERV1 0 559 1 29 47 0 0 chr3 35129019 35129062 -182908096 + AT_rich Low_complexity Low_complexity 1 43 0 257 311 33 8 chr3 35129362 35129484 -182907674 - L1ME LINE L1 -514 5607 5483 632 234 0 29 chr3 35129645 35129782 -182907376 - FLAM_A SINE Alu 0 133 1 1566 201 0 22 chr3 35131083 35131401 -182905757 - MLT1A1 LTR MaLR -54 311 1 24 0 0 0 chr3 35131940 35131964 -182905194 + AT_rich Low_complexity Low_complexity 1 24 0 327 279 23 12 chr3 35132011 35132097 -182905061 - L2 LINE L2 -1 3312 3226 2019 130 3 43 chr3 35132151 35132473 -182904685 + AluSx SINE Alu 2 310 -2 195 240 0 40 chr3 35132541 35132591 -182904567 - L2 LINE L2 -85 3228 3181 360 266 19 38 chr3 35133497 35133633 -182903525 + MIR SINE MIR 11 143 -65 454 222 195 41 chr3 35136431 35136652 -182900506 - MIR SINE MIR 0 262 8 22 0 0 0 chr3 35137708 35137730 -182899428 + AT_rich Low_complexity Low_complexity 1 22 0 266 250 79 0 chr3 35138671 35138747 -182898411 - MIR3 SINE MIR -11 197 116 207 0 0 0 chr3 35139403 35139426 -182897732 + (A)n Simple_repeat Simple_repeat 1 23 0 339 259 95 26 chr3 35140733 35140849 -182896309 - MIR SINE MIR -76 186 63 200 342 76 0 chr3 35140945 35141024 -182896134 - MIR SINE MIR -63 145 61 893 316 49 36 chr3 35141235 35141685 -182895473 + LTR16C LTR ERVL 36 491 0 258 383 7 21 chr3 35141703 35141844 -182895314 + MER5B DNA MER1_type 1 139 -39 198 0 0 0 chr3 35141953 35141975 -182895183 + (A)n Simple_repeat Simple_repeat 1 22 0 374 266 89 48 chr3 35142550 35142674 -182894484 - MIR SINE MIR -64 144 16 1548 175 45 29 chr3 35142920 35143298 -182893860 + MLT1B LTR MaLR 7 390 0 384 312 51 51 chr3 35144681 35144934 -182892224 - L2 LINE L2 -561 2753 2501 237 108 0 0 chr3 35144934 35144971 -182892187 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 784 302 9 5 chr3 35145727 35145949 -182891209 - MIR SINE MIR -9 253 31 216 240 0 40 chr3 35146125 35146175 -182890983 - MIR SINE MIR -129 79 32 421 311 50 6 chr3 35148057 35148230 -182888928 + MIR SINE MIR 35 214 -48 1052 249 0 17 chr3 35148239 35148480 -182888678 + LTR53 LTR ERVL 269 505 -14 246 354 0 0 chr3 35149087 35149169 -182887989 + L2 LINE L2 3227 3308 -5 216 261 0 0 chr3 35150258 35150304 -182886854 + (CA)n Simple_repeat Simple_repeat 2 47 0 735 211 60 6 chr3 35151855 35152021 -182885137 + MER5B DNA MER1_type 1 175 -3 1984 146 0 0 chr3 35152058 35152339 -182884819 + AluSx SINE Alu 1 281 -31 15219 33 0 0 chr3 35152861 35154810 -182882348 - L1P LINE L1 -2532 3614 1666 7829 17 0 0 chr3 35154810 35156356 -182880802 + L1PA3 LINE L1 4609 6155 0 231 226 0 0 chr3 35156767 35156820 -182880338 + A-rich Low_complexity Low_complexity 1 53 0 314 280 0 0 chr3 35158650 35158725 -182878433 + L2 LINE L2 3229 3303 -10 205 122 24 24 chr3 35159413 35159454 -182877704 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 222 259 35 0 chr3 35161558 35161616 -182875542 + L2 LINE L2 3253 3312 -1 2479 199 33 7 chr3 35162371 35162943 -182874215 - L1MB7 LINE L1 -13 6171 5585 925 224 24 0 chr3 35164378 35164583 -182872575 + MER2 DNA MER2_type 1 210 -135 31 0 0 0 chr3 35164608 35164639 -182872519 + AT_rich Low_complexity Low_complexity 1 31 0 269 250 208 0 chr3 35165052 35165172 -182871986 + LTR67 LTR ERVL 405 549 -8 1904 150 7 10 chr3 35165904 35166204 -182870954 - AluSx SINE Alu -12 300 2 1913 200 73 43 chr3 35166409 35166899 -182870259 + MLT1D LTR MaLR 1 505 0 1063 273 50 14 chr3 35166927 35167286 -182869872 + MLT1J2 LTR MaLR 56 427 -23 201 299 196 10 chr3 35167293 35167390 -182869768 - L2 LINE L2 -2 3311 3197 462 296 110 38 chr3 35167573 35167918 -182869240 - MLT1J1 LTR MaLR -11 435 66 348 262 78 14 chr3 35168014 35168155 -182869003 - MIR SINE MIR -60 202 53 222 37 0 0 chr3 35168225 35168252 -182868906 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1452 140 183 19 chr3 35168993 35169315 -182867843 - THE1C LTR MaLR 0 375 1 234 62 0 0 chr3 35169317 35169349 -182867809 + (ATG)n Simple_repeat Simple_repeat 3 34 0 11655 42 4 1 chr3 35169940 35171457 -182865701 - L1PA5 LINE L1 -865 5281 3760 7283 37 0 0 chr3 35171457 35172351 -182864807 + L1PA5 LINE L1 5269 6163 0 1597 182 62 55 chr3 35172593 35172619 -182864539 - MLT2D LTR ERVL -7 407 383 495 0 0 0 chr3 35172619 35172674 -182864484 + (TG)n Simple_repeat Simple_repeat 2 56 0 1597 182 62 55 chr3 35172674 35172924 -182864234 - MLT2D LTR ERVL -31 383 125 2287 171 45 0 chr3 35172924 35173328 -182863830 - MSTB LTR MaLR 0 426 5 1597 182 62 55 chr3 35173328 35173451 -182863707 - MLT2D LTR ERVL -289 125 4 276 204 0 0 chr3 35173586 35173640 -182863518 - MER69 DNA AcHobo -11 2515 2462 1724 244 60 15 chr3 35173669 35174272 -182862886 + L1ME2 LINE L1 5526 6155 -9 741 228 45 65 chr3 35174286 35174668 -182862490 - MER69 DNA AcHobo -71 2455 2082 310 206 38 175 chr3 35175196 35175356 -182861802 + MIR SINE MIR 118 255 -7 218 281 70 47 chr3 35175381 35175509 -182861649 + L2 LINE L2 2232 2362 -952 1307 192 13 7 chr3 35175633 35175940 -182861218 - MER33 DNA MER1_type -22 302 1 246 311 46 60 chr3 35176563 35176714 -182860444 + L2 LINE L2 3164 3312 -1 776 271 64 27 chr3 35177240 35177535 -182859623 - MLT2F LTR ERVL -344 319 14 402 281 116 0 chr3 35177559 35177705 -182859453 - MLT1K LTR MaLR 0 588 426 3412 177 10 94 chr3 35177709 35178335 -182858823 + L1MA9 LINE L1 5163 5739 -573 500 92 0 13 chr3 35178335 35178411 -182858747 + MADE1 DNA Mariner 1 75 -5 3412 177 10 94 chr3 35178411 35178796 -182858362 + L1MA9 LINE L1 5739 6155 -157 362 329 7 26 chr3 35178802 35178957 -182858201 - MLT1K LTR MaLR -153 435 284 1054 216 113 21 chr3 35179005 35179288 -182857870 - MLT1D LTR MaLR 0 505 197 1168 234 65 60 chr3 35179370 35179528 -182857630 + MLT2B1 LTR ERVL 105 261 -259 306 73 0 0 chr3 35179528 35179569 -182857589 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1168 234 65 60 chr3 35179569 35179776 -182857382 + MLT2B1 LTR ERVL 261 475 -45 375 23 0 0 chr3 35179776 35179820 -182857338 + (TG)n Simple_repeat Simple_repeat 1 44 0 1168 234 65 60 chr3 35179820 35179867 -182857291 + MLT2B1 LTR ERVL 475 520 0 1020 161 65 15 chr3 35179867 35180066 -182857092 - MLT1D LTR MaLR -296 209 1 243 337 0 0 chr3 35180069 35180161 -182856997 - MLT1K LTR MaLR -342 246 155 315 350 47 33 chr3 35180357 35180571 -182856587 + MIR SINE MIR 34 250 -12 235 309 164 24 chr3 35181545 35181710 -182855448 + MIR3 SINE MIR 14 201 -7 209 357 119 53 chr3 35181738 35181982 -182855176 + L2 LINE L2 2997 3256 -16 516 286 196 0 chr3 35182284 35182473 -182854685 + MIR SINE MIR 13 238 -24 69 48 0 0 chr3 35182496 35182600 -182854558 + AT_rich Low_complexity Low_complexity 1 104 0 469 323 47 25 chr3 35182802 35182917 -182854241 + MIR SINE MIR 23 134 -128 12582 33 3 0 chr3 35182917 35185194 -182851964 + L1PA4 LINE L1 3869 6148 -7 469 323 47 25 chr3 35185194 35185313 -182851845 + MIR SINE MIR 134 262 0 190 336 123 16 chr3 35186125 35186247 -182850911 - MIR SINE MIR -56 152 18 400 244 177 55 chr3 35186665 35186829 -182850329 - MER5A DNA MER1_type -5 184 1 222 304 29 0 chr3 35187117 35187186 -182849972 + L2 LINE L2 2725 2795 -519 476 275 211 31 chr3 35187187 35187547 -182849611 - MLT1J1 LTR MaLR -2 444 20 452 348 50 0 chr3 35187865 35188006 -182849152 + L2 LINE L2 3121 3268 -4 1085 112 5 0 chr3 35188006 35188210 -182848948 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 602 178 5 38 chr3 35188211 35188396 -182848762 + GA-rich Low_complexity Low_complexity 2 180 0 436 226 155 77 chr3 35188633 35188801 -182848357 - MER5A DNA MER1_type 0 189 9 317 354 90 0 chr3 35190207 35190351 -182846807 - MIR SINE MIR -79 183 27 553 203 83 8 chr3 35192281 35192414 -182844744 - MER3 DNA MER1_type -66 143 1 649 332 13 8 chr3 35193311 35193546 -182843612 - MIR SINE MIR -2 260 25 1176 208 118 12 chr3 35194230 35194485 -182842673 + AluJo SINE Alu 7 288 -24 2306 64 4 0 chr3 35194495 35194817 -182842341 + AluY SINE Alu 1 323 0 369 0 0 0 chr3 35195065 35195106 -182842052 + (CA)n Simple_repeat Simple_repeat 1 41 0 198 273 5 41 chr3 35195272 35195372 -182841786 + MIR SINE MIR 49 141 -67 2146 117 0 7 chr3 35196510 35196819 -182840339 + AluY SINE Alu 1 307 -4 1004 88 61 0 chr3 35196819 35196966 -182840192 + AluSg/x SINE Alu 132 287 -23 2086 116 0 0 chr3 35196968 35197281 -182839877 + AluSq SINE Alu 1 313 0 245 356 0 0 chr3 35197744 35197848 -182839310 + A-rich Low_complexity Low_complexity 2 105 0 876 227 92 21 chr3 35198776 35199102 -182838056 + L1ME2 LINE L1 5807 6155 -9 216 67 0 0 chr3 35199119 35199149 -182838009 + (CA)n Simple_repeat Simple_repeat 2 31 0 1744 263 21 23 chr3 35199173 35199790 -182837368 + L1ME3A LINE L1 5527 6142 -28 317 256 120 15 chr3 35200522 35200655 -182836503 - MLT1J LTR MaLR -46 465 319 5121 136 28 0 chr3 35200961 35201905 -182835253 + L1PB4 LINE L1 5169 6137 -19 23 54 0 0 chr3 35202076 35202113 -182835045 + AT_rich Low_complexity Low_complexity 1 37 0 6108 133 61 34 chr3 35202241 35203924 -182833234 - L1MA1 LINE L1 -1 7720 5971 2258 121 0 0 chr3 35203924 35204229 -182832929 + AluSx SINE Alu 1 305 -7 6108 133 61 34 chr3 35204229 35204686 -182832472 - L1MA1 LINE L1 -1750 5971 5528 6673 198 27 15 chr3 35204686 35205293 -182831865 - L1MA1 LINE L1 -2271 5294 4696 2131 116 7 20 chr3 35205293 35205594 -182831564 - AluSg SINE Alu -13 297 1 6673 198 27 15 chr3 35205594 35205630 -182831528 - L1MA1 LINE L1 -2869 4696 4662 2479 80 0 0 chr3 35205630 35205941 -182831217 - AluY SINE Alu 0 311 1 6673 198 27 15 chr3 35205941 35207455 -182829703 - L1MA1 LINE L1 -2903 4662 3110 40283 40 21 2 chr3 35207455 35213487 -182823671 + L1PA3 LINE L1 1 6152 -3 16836 167 49 10 chr3 35213514 35216511 -182820647 - L1MA1 LINE L1 -4438 3127 16 369 309 52 0 chr3 35219021 35219157 -182818001 - L2 LINE L2 0 3313 3171 962 98 33 20 chr3 35219282 35219435 -182817723 - L1PA15 LINE L1 0 6165 6011 1039 255 28 0 chr3 35219454 35219709 -182817449 - L2 LINE L2 -774 2540 2279 209 140 200 0 chr3 35219794 35219844 -182817314 - MIR SINE MIR -110 152 93 925 258 28 9 chr3 35219848 35220065 -182817093 + MER58A DNA MER1_type 1 221 -3 233 330 11 11 chr3 35220073 35220161 -182816997 - MIR SINE MIR -172 90 3 21 36 0 0 chr3 35220192 35220220 -182816938 + AT_rich Low_complexity Low_complexity 1 28 0 214 240 0 130 chr3 35220892 35220992 -182816166 + MIR SINE MIR 168 254 -8 1767 187 82 6 chr3 35222472 35222815 -182814343 + MLT1D LTR MaLR 22 390 -115 1018 254 36 54 chr3 35222837 35223274 -182813884 + MLT1-int LTR MaLR 962 1714 -21 339 25 0 0 chr3 35223508 35223548 -182813610 + (TG)n Simple_repeat Simple_repeat 1 40 0 474 350 91 25 chr3 35224839 35225202 -182811956 + L2 LINE L2 2205 2591 -723 208 315 0 0 chr3 35225361 35225434 -182811724 + (TA)n Simple_repeat Simple_repeat 1 73 0 579 354 16 24 chr3 35225665 35225919 -182811239 - MIR SINE MIR -8 254 3 370 316 0 0 chr3 35225970 35226068 -182811090 - L2 LINE L2 -24 3289 3192 310 337 85 30 chr3 35226075 35226345 -182810813 - L1MC/D LINE L1 -2007 5801 5517 970 266 106 66 chr3 35226503 35228022 -182809136 + L1ME3A LINE L1 2738 4196 -1974 7302 40 8 0 chr3 35228022 35228952 -182808206 + L1PA4 LINE L1 5218 6154 -1 970 266 106 66 chr3 35228952 35229761 -182807397 + L1ME3A LINE L1 4196 6099 -71 824 197 10 42 chr3 35232809 35233002 -182804156 - L1MD2 LINE L1 -474 5885 5699 236 296 11 45 chr3 35233279 35233367 -182803791 + L2 LINE L2 3229 3313 0 400 274 15 37 chr3 35233628 35233763 -182803395 - LTR45 LTR ERV1 -2 523 392 27004 81 5 4 chr3 35234516 35238276 -182798882 - L1P LINE L1 -734 5420 1658 5702 49 3 6 chr3 35238276 35238984 -182798174 + L1PA6 LINE L1 5443 6148 -6 301 337 38 51 chr3 35239022 35239470 -182797688 + L1ME3 LINE L1 23 464 -5959 556 293 78 33 chr3 35239790 35240805 -182796353 + L1ME3 LINE L1 1156 2392 -4549 1722 222 79 54 chr3 35240805 35242012 -182795146 + L1ME3 LINE L1 5488 6726 -233 385 257 0 99 chr3 35242043 35242195 -182794963 + L1ME3 LINE L1 6814 6950 -7 1211 229 37 65 chr3 35242218 35242619 -182794539 - MLT1B LTR MaLR 0 390 1 5699 119 0 0 chr3 35244054 35245058 -182792100 - L1PB2 LINE L1 0 6151 5147 322 59 98 0 chr3 35245058 35245109 -182792049 + MADE1 DNA Mariner 1 56 -24 313 267 0 0 chr3 35245121 35245207 -182791951 - L1PB2 LINE L1 -999 5147 5062 3930 147 36 28 chr3 35245225 35246630 -182790528 + LTR28-int LTR ERV1 632 4818 -399 2351 124 10 10 chr3 35246612 35246999 -182790159 + LTR28-int LTR ERV1 4163 4549 -2988 * 11158 124 13 17 chr3 35246996 35247377 -182789781 + LTR28-int LTR ERV1 2250 2631 -2586 3539 88 47 4 chr3 35247377 35247867 -182789291 - MER9 LTR ERVK 0 511 1 11158 124 13 17 chr3 35247867 35249374 -182787784 + LTR28-int LTR ERV1 2631 5058 -159 2436 169 30 82 chr3 35249398 35250119 -182787039 + LTR28 LTR ERV1 2 636 0 345 326 103 34 chr3 35250130 35250363 -182786795 - HAL1 LINE L1 -1841 666 418 21 71 0 0 chr3 35250390 35250432 -182786726 + AT_rich Low_complexity Low_complexity 1 42 0 401 173 387 40 chr3 35250487 35250660 -182786498 - AluJo SINE Alu -109 193 72 347 323 75 0 chr3 35250713 35250914 -182786244 - HAL1 LINE L1 -2282 225 10 10222 220 55 11 chr3 35251151 35254721 -182782437 + L1PA13 LINE L1 1 3739 -3058 21 0 0 0 chr3 35254990 35255011 -182782147 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr3 35255983 35256011 -182781147 + (GA)n Simple_repeat Simple_repeat 2 29 0 23 68 0 0 chr3 35256113 35256157 -182781001 + AT_rich Low_complexity Low_complexity 1 44 0 27 0 0 0 chr3 35256641 35256668 -182780490 + AT_rich Low_complexity Low_complexity 1 27 0 354 295 90 18 chr3 35256809 35256975 -182780183 + L2 LINE L2 2709 2886 -428 1317 247 121 50 chr3 35256977 35257531 -182779627 + MLT1E LTR MaLR 1 593 0 626 124 53 9 chr3 35257599 35257712 -182779446 - L1PA11 LINE L1 -2 6172 6055 243 307 43 36 chr3 35257727 35257867 -182779291 + L2 LINE L2 3008 3148 -165 237 203 17 0 chr3 35257897 35257956 -182779202 - HAL1 LINE L1 -4 2503 2444 2383 116 11 8 chr3 35258302 35258673 -182778485 + L1PB1 LINE L1 5780 6151 0 2556 48 3 10 chr3 35258709 35259022 -182778136 + AluY SINE Alu 1 311 0 361 337 60 18 chr3 35260476 35260642 -182776516 - MIR3 SINE MIR -6 202 30 434 337 161 20 chr3 35260921 35261407 -182775751 - L2 LINE L2 -106 3207 2654 431 303 62 15 chr3 35261947 35262142 -182775016 - MIR SINE MIR -31 231 28 204 97 0 0 chr3 35263424 35263455 -182773703 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 206 300 100 33 chr3 35263998 35264118 -182773040 - MIR SINE MIR -34 228 101 329 299 198 38 chr3 35264347 35264504 -182772654 - MIR SINE MIR -49 213 32 241 227 187 13 chr3 35264618 35264693 -182772465 - MIR SINE MIR -100 162 75 251 229 72 6 chr3 35265743 35265909 -182771249 + (TA)n Simple_repeat Simple_repeat 2 178 0 205 295 137 32 chr3 35266051 35266146 -182771012 - MIR SINE MIR -123 139 35 2672 79 3 0 chr3 35266200 35266555 -182770603 - L1PA7 LINE L1 -3 6151 5796 2390 151 63 14 chr3 35267160 35267604 -182769554 + L1PB4 LINE L1 5679 6144 -12 266 340 11 75 chr3 35267613 35267704 -182769454 - MIR SINE MIR -38 224 129 2889 10 0 0 chr3 35267704 35268018 -182769140 - AluYb8 SINE Alu -4 314 1 266 340 11 75 chr3 35268018 35268151 -182769007 - MIR SINE MIR -133 129 17 315 0 0 0 chr3 35268151 35268186 -182768972 + (CA)n Simple_repeat Simple_repeat 1 35 0 458 257 28 0 chr3 35268232 35268341 -182768817 + MER5B DNA MER1_type 66 177 -1 180 0 0 0 chr3 35268351 35268371 -182768787 + (CAT)n Simple_repeat Simple_repeat 2 21 0 893 253 181 39 chr3 35269656 35270064 -182767094 - L2 LINE L2 0 3313 2848 23 0 0 0 chr3 35270113 35270136 -182767022 + AT_rich Low_complexity Low_complexity 1 23 0 1387 77 22 17 chr3 35270136 35270317 -182766841 + AluY SINE Alu 106 287 -24 23 0 0 0 chr3 35270317 35270340 -182766818 + AT_rich Low_complexity Low_complexity 1 23 0 302 346 27 53 chr3 35271023 35271211 -182765947 + MIR SINE MIR 37 219 -43 940 288 93 68 chr3 35271377 35272134 -182765024 + L2 LINE L2 2507 3304 -9 2129 115 6 10 chr3 35272418 35272731 -182764427 + AluSx SINE Alu 1 312 0 3130 273 65 38 chr3 35273219 35274756 -182762402 - L1MEc LINE L1 -4306 2090 512 1548 279 77 19 chr3 35274797 35275327 -182761831 - L1MEc LINE L1 -5754 642 82 2444 57 14 0 chr3 35275578 35275875 -182761283 + AluY SINE Alu 1 301 -10 303 306 138 20 chr3 35276449 35276753 -182760405 + L1ME4a LINE L1 5561 5900 -221 229 206 48 0 chr3 35277251 35277314 -182759844 - MER96B DNA MER1_type? -32 385 320 * 418 246 26 0 chr3 35277309 35277423 -182759735 + MER96B DNA MER1_type? 300 416 -1 1881 135 35 7 chr3 35277589 35277871 -182759287 - AluSx SINE Alu -22 290 1 329 242 188 8 chr3 35278874 35279002 -182758156 - L1ME3A LINE L1 -5 6165 6015 1871 186 18 42 chr3 35279022 35279074 -182758084 + MLT2C1 LTR ERVL 21 73 -324 1873 163 3 0 chr3 35279074 35279368 -182757790 + AluSx SINE Alu 3 297 -15 1871 186 18 42 chr3 35279368 35279658 -182757500 + MLT2C1 LTR ERVL 73 356 -41 378 61 0 0 chr3 35279658 35279707 -182757451 + (TG)n Simple_repeat Simple_repeat 2 50 0 1871 186 18 42 chr3 35279707 35279749 -182757409 + MLT2C1 LTR ERVL 356 397 0 366 264 101 34 chr3 35279857 35280035 -182757123 - MIR SINE MIR -4 258 69 186 345 0 0 chr3 35280399 35280457 -182756701 - MIR3 SINE MIR -3 205 148 199 308 117 42 chr3 35280515 35280635 -182756523 - MIR SINE MIR -24 238 110 22 35 0 0 chr3 35281610 35281639 -182755519 + AT_rich Low_complexity Low_complexity 1 29 0 244 277 134 8 chr3 35282024 35282143 -182755015 - MIR SINE MIR -30 232 99 208 263 92 13 chr3 35285958 35286034 -182751124 - MIR SINE MIR -93 169 88 386 301 301 0 chr3 35287704 35288006 -182749152 - LTR33A LTR ERVL 0 523 131 230 184 41 0 chr3 35288605 35288654 -182748504 + LTR33A LTR ERVL 467 517 -6 1742 130 18 58 chr3 35288833 35289211 -182747947 + MER67C LTR ERV1 1 388 -243 208 243 14 40 chr3 35289235 35289309 -182747849 + L2 LINE L2 235 306 -3008 319 171 79 13 chr3 35289317 35289393 -182747765 + MER67D LTR ERV1 434 514 0 1103 283 56 19 chr3 35289797 35290207 -182746951 + LTR16A LTR ERVL 26 450 0 257 262 143 62 chr3 35290288 35290498 -182746660 - MIR SINE MIR 0 262 36 224 346 69 31 chr3 35291092 35291222 -182745936 - L2 LINE L2 0 3272 3138 742 219 6 0 chr3 35291292 35291461 -182745697 - L1 LINE L1 -877 5269 5100 188 309 87 47 chr3 35291505 35291654 -182745504 - L2 LINE L2 -228 3044 2890 401 268 10 0 chr3 35291760 35291857 -182745301 - L2 LINE L2 0 3272 3175 611 225 59 6 chr3 35291922 35292091 -182745067 + MER5B DNA MER1_type 1 178 0 739 213 8 0 chr3 35292099 35292226 -182744932 - MER5A DNA MER1_type 0 189 62 4880 160 20 12 chr3 35292226 35293360 -182743798 - L1PB4 LINE L1 -1 6155 5006 1318 201 81 0 chr3 35293360 35293658 -182743500 + L1PB4 LINE L1 4667 4988 -1158 334 261 0 0 chr3 35293659 35293728 -182743430 - MER5A DNA MER1_type -116 73 5 433 263 254 29 chr3 35294002 35294207 -182742951 + MIR SINE MIR 9 259 -3 21 82 0 0 chr3 35295222 35295271 -182741887 + AT_rich Low_complexity Low_complexity 1 49 0 447 239 194 39 chr3 35295477 35295657 -182741501 - MIR SINE MIR -8 254 47 4261 189 53 5 chr3 35295663 35296771 -182740387 - L1MB8 LINE L1 0 6178 5021 12140 99 77 7 chr3 35296784 35297035 -182740123 - L1MA1 LINE L1 -27 6277 6045 672 97 0 26 chr3 35297035 35297149 -182740009 - L1MA1 LINE L1 0 6302 6192 12140 99 77 7 chr3 35297149 35299798 -182737360 - L1MA1 LINE L1 -259 6045 3161 7511 28 2 0 chr3 35299798 35301388 -182735770 + L1PA4 LINE L1 4557 6148 -7 320 322 0 9 chr3 35301392 35301507 -182735651 + MIR SINE MIR 149 262 0 186 336 123 16 chr3 35302319 35302441 -182734717 - MIR SINE MIR -56 152 18 381 250 177 55 chr3 35302859 35303023 -182734135 - MER5A DNA MER1_type -5 184 1 219 304 29 0 chr3 35303311 35303380 -182733778 + L2 LINE L2 2725 2795 -519 593 275 211 31 chr3 35303381 35303741 -182733417 - MLT1J1 LTR MaLR -2 444 20 456 336 31 0 chr3 35304072 35304200 -182732958 + L2 LINE L2 3137 3268 -4 1085 112 5 0 chr3 35304200 35304404 -182732754 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 591 183 11 33 chr3 35304405 35304585 -182732573 + GA-rich Low_complexity Low_complexity 2 177 0 227 79 26 0 chr3 35304585 35304623 -182732535 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 433 226 155 77 chr3 35304828 35304996 -182732162 - MER5A DNA MER1_type 0 189 9 315 354 90 0 chr3 35306404 35306548 -182730610 - MIR SINE MIR -79 183 27 235 289 21 41 chr3 35308188 35308285 -182728873 - L2 LINE L2 -243 3029 2935 192 40 0 0 chr3 35308577 35308602 -182728556 + (TTG)n Simple_repeat Simple_repeat 2 26 0 222 378 25 25 chr3 35309281 35309400 -182727758 - L2 LINE L2 0 3272 3154 258 315 8 69 chr3 35309616 35309746 -182727412 - MIR3 SINE MIR -4 204 83 1693 209 73 104 chr3 35309888 35310111 -182727047 + MLT1F1 LTR MaLR 5 233 -334 297 0 0 0 chr3 35310111 35310144 -182727014 + (CA)n Simple_repeat Simple_repeat 1 33 0 1693 209 73 104 chr3 35310144 35310412 -182726746 + MLT1F1 LTR MaLR 233 481 -86 1872 167 0 3 chr3 35311772 35312077 -182725081 + AluJo SINE Alu 1 304 -8 1520 249 7 27 chr3 35312122 35312340 -182724818 - L1ME1 LINE L1 -5 6161 5953 1804 203 103 61 chr3 35312340 35312826 -182724332 - MLT1F1 LTR MaLR 0 567 54 1826 162 14 3 chr3 35312826 35313122 -182724036 + AluSx SINE Alu 1 299 -13 1804 203 103 61 chr3 35313122 35313178 -182723980 - MLT1F1 LTR MaLR -513 54 2 1520 249 7 27 chr3 35313178 35313372 -182723786 - L1ME1 LINE L1 -213 5953 5757 29324 125 16 75 chr3 35313438 35319318 -182717840 + L1P3 LINE L1 12 5530 -624 * 43103 46 3 3 chr3 35319287 35325432 -182711726 + L1PA3 LINE L1 7 6150 -5 183 42 0 0 chr3 35325439 35325463 -182711695 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 4962 75 10 1 chr3 35325466 35326137 -182711021 + L1PA7 LINE L1 5476 6152 -2 29 84 0 0 chr3 35329481 35329552 -182707606 + AT_rich Low_complexity Low_complexity 1 71 0 371 330 60 14 chr3 35329794 35330012 -182707146 - L1M4 LINE L1 -2995 3151 2924 24 67 0 0 chr3 35330227 35330272 -182706886 + AT_rich Low_complexity Low_complexity 1 45 0 198 209 0 0 chr3 35330413 35330456 -182706702 + (TA)n Simple_repeat Simple_repeat 1 43 0 1165 210 102 67 chr3 35330650 35331083 -182706075 + L1M4 LINE L1 4680 5127 -1019 451 288 132 69 chr3 35331083 35331402 -182705756 + MLT1I LTR MaLR 71 409 0 21 82 0 0 chr3 35333269 35333318 -182703840 + AT_rich Low_complexity Low_complexity 1 49 0 447 239 194 39 chr3 35333524 35333704 -182703454 - MIR SINE MIR -8 254 47 4216 190 54 5 chr3 35333710 35334817 -182702341 - L1MB8 LINE L1 0 6178 5021 12140 99 77 7 chr3 35334830 35335081 -182702077 - L1MA1 LINE L1 -27 6277 6045 672 97 0 26 chr3 35335081 35335195 -182701963 - L1MA1 LINE L1 0 6302 6192 12140 99 77 7 chr3 35335195 35337844 -182699314 - L1MA1 LINE L1 -259 6045 3161 7244 34 7 7 chr3 35337844 35339443 -182697715 + L1PA4 LINE L1 4557 6155 0 8721 195 18 12 chr3 35339462 35342447 -182694711 + L1PA16 LINE L1 3165 6166 0 299 266 18 18 chr3 35342997 35343106 -182694052 - Charlie8 DNA MER1_type -1930 487 379 392 327 84 5 chr3 35343428 35343630 -182693528 + Charlie8 DNA MER1_type 1 218 -2199 192 330 120 65 chr3 35343665 35343865 -182693293 + L2 LINE L2 3062 3272 0 257 277 0 0 chr3 35343899 35343964 -182693194 - L2 LINE L2 -7 3265 3201 462 180 0 0 chr3 35344416 35344505 -182692653 + L1MA10 LINE L1 6232 6320 -14 2633 192 20 14 chr3 35344514 35345008 -182692150 - MLT2B1 LTR ERVL -23 497 1 239 360 0 0 chr3 35345035 35345124 -182692034 - MIR SINE MIR -6 256 168 258 105 0 0 chr3 35345223 35345261 -182691897 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr3 35346226 35346247 -182690911 + AT_rich Low_complexity Low_complexity 1 21 0 344 290 92 23 chr3 35348493 35348624 -182688534 - MIR SINE MIR -21 241 102 3498 151 7 4 chr3 35349390 35350296 -182686862 + L1MC1 LINE L1 5381 6332 -1 530 271 129 44 chr3 35351524 35351819 -182685339 + MER5C DNA MER1_type 4 323 -1 350 309 26 78 chr3 35353970 35354161 -182682997 + MIR SINE MIR 50 230 -32 18615 38 2 5 chr3 35355155 35358231 -182678927 - L1PA3 LINE L1 -13 6142 3078 280 0 24 24 chr3 35359349 35359390 -182677768 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 180 178 22 22 chr3 35359416 35359461 -182677697 + MIR SINE MIR 97 141 -67 2080 162 71 2 chr3 35360313 35360709 -182676449 + MER95 LTR ERV 9 431 0 623 154 0 18 chr3 35361260 35361370 -182675788 - L1PB4 LINE L1 0 6156 6049 602 295 136 45 chr3 35361406 35361791 -182675367 - HAL1 LINE L1 -700 1807 1458 2107 119 57 23 chr3 35361791 35362143 -182675015 - THE1B LTR MaLR 0 364 1 602 295 136 45 chr3 35362143 35362303 -182674855 - HAL1 LINE L1 -1049 1458 1314 1113 166 57 81 chr3 35362303 35362635 -182674523 - MER33 DNA MER1_type 0 324 1 602 295 136 45 chr3 35362635 35363014 -182674144 - HAL1 LINE L1 -1193 1314 798 671 241 75 10 chr3 35363372 35363571 -182673587 - LTR16A1 LTR ERVL -13 444 233 267 258 82 10 chr3 35363555 35363652 -182673506 - LTR16A1 LTR ERVL -352 105 2 * 290 250 109 0 chr3 35363652 35363744 -182673414 - HAL1 LINE L1 -2398 109 8 336 312 116 21 chr3 35364284 35364473 -182672685 - MIR SINE MIR -36 226 20 1641 125 106 4 chr3 35365418 35365682 -182671476 - AluSx SINE Alu -21 291 1 1943 47 0 0 chr3 35365899 35366155 -182671003 - L1P LINE L1 -2683 3463 3208 5003 35 7 3 chr3 35366155 35366753 -182670405 + L1PA5 LINE L1 5548 6153 -1 1450 211 110 15 chr3 35366776 35367175 -182669983 + MER110 LTR ERV1 1 437 -54 462 353 49 0 chr3 35367216 35367420 -182669738 - MIR SINE MIR -17 245 32 341 300 93 34 chr3 35367848 35368568 -182668590 - L1ME LINE L1 -4639 2186 1273 323 317 45 57 chr3 35368576 35368822 -182668336 - L1ME LINE L1 -5295 1339 1097 315 0 0 0 chr3 35369178 35369213 -182667945 + (A)n Simple_repeat Simple_repeat 1 35 0 31 0 0 0 chr3 35369304 35369335 -182667823 + AT_rich Low_complexity Low_complexity 1 31 0 2254 107 0 0 chr3 35370741 35371039 -182666119 - AluSx SINE Alu -13 299 2 912 223 122 14 chr3 35371159 35371446 -182665712 - L1ME3A LINE L1 -9 6161 5844 280 244 52 37 chr3 35371478 35371613 -182665545 + MER113 DNA MER1_type? 1 137 -384 25 65 0 0 chr3 35371651 35371697 -182665461 + AT_rich Low_complexity Low_complexity 1 46 0 210 299 30 0 chr3 35372415 35372482 -182664676 + MIR SINE MIR 72 140 -68 1757 284 95 36 chr3 35372905 35374375 -182662783 + L1ME1 LINE L1 320 1853 -4227 7510 34 0 0 chr3 35374375 35375731 -182661427 + L1PA4 LINE L1 4781 6153 -2 1757 284 95 36 chr3 35375731 35376088 -182661070 + L1ME1 LINE L1 1853 2188 -3892 2337 254 135 17 chr3 35376395 35377611 -182659547 + L1ME1 LINE L1 2278 3636 -2444 2037 258 58 27 chr3 35377715 35378389 -182658769 + L1ME1 LINE L1 5405 6099 -1 275 310 0 0 chr3 35378709 35378809 -182658349 + L1ME LINE L1 3265 3364 -2716 851 272 25 11 chr3 35378961 35379240 -182657918 + L1ME LINE L1 3595 3877 -2203 318 344 27 36 chr3 35379697 35379918 -182657240 + L1ME LINE L1 5389 5607 -448 28216 132 21 51 chr3 35380005 35381482 -182655676 + L1PA8 LINE L1 2 1522 -4650 2119 139 0 0 chr3 35381482 35381784 -182655374 + AluSc SINE Alu 1 302 -7 28216 132 21 51 chr3 35381784 35386684 -182650474 + L1PA8 LINE L1 1522 6170 -2 626 122 9 0 chr3 35386696 35386803 -182650355 + (GGAA)n Simple_repeat Simple_repeat 2 109 0 234 250 0 26 chr3 35386957 35387033 -182650125 + L1ME LINE L1 5757 5830 -225 1452 242 45 45 chr3 35387054 35387559 -182649599 + MLT1D LTR MaLR 1 505 0 239 219 0 0 chr3 35387582 35387623 -182649535 - MER8 DNA MER2_type 0 239 199 2521 159 58 4 chr3 35387623 35388075 -182649083 - MER66A LTR ERV1 0 478 3 13790 136 7 18 chr3 35388079 35390218 -182646940 - MER66A-int LTR ERV1 -6 6670 4557 346 193 59 160 chr3 35390218 35390337 -182646821 - MER4D LTR ERV1 -744 159 53 2789 172 45 41 chr3 35390337 35391316 -182645842 - MER66A-int LTR ERV1 -2224 4452 3149 463 146 0 0 chr3 35391317 35391399 -182645759 - MER66-int LTR ERV1 -3226 3450 3369 3716 67 2 6 chr3 35391399 35391889 -182645269 - L1PA6 LINE L1 -1 6153 5666 36636 91 10 17 chr3 35392913 35399099 -182638059 - L1PA3 LINE L1 -3 6152 11 4571 207 53 48 chr3 35399287 35400313 -182636845 - MER66-int LTR ERV1 -3310 3366 2336 2655 198 54 1 chr3 35400309 35400845 -182636313 - MER66-int LTR ERV1 -4515 2161 1562 * 1080 193 20 71 chr3 35400865 35401119 -182636039 - MER66A LTR ERV1 -237 241 1 1997 182 20 10 chr3 35401121 35401511 -182635647 + Tigger2a DNA MER2_type 41 434 0 25 65 0 0 chr3 35401583 35401629 -182635529 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr3 35401672 35401698 -182635460 + AT_rich Low_complexity Low_complexity 1 26 0 3039 136 131 25 chr3 35402275 35402840 -182634318 + MER51A LTR ERV1 1 625 -9 747 219 0 83 chr3 35403256 35403461 -182633697 + MER5A DNA MER1_type 1 188 -1 874 225 48 0 chr3 35403843 35404030 -182633128 - MIR SINE MIR -66 196 1 388 295 109 36 chr3 35405199 35405392 -182631766 + MLT1J2 LTR MaLR 240 446 -4 1948 110 0 57 chr3 35405484 35405783 -182631375 + AluY SINE Alu 1 282 -29 808 19 37 0 chr3 35405788 35405896 -182631262 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 3399 209 70 50 chr3 35406219 35407489 -182629669 - L1ME2 LINE L1 -10 6154 4855 662 243 21 16 chr3 35408375 35408564 -182628594 + L1MC5 LINE L1 7048 7237 -724 24 0 0 0 chr3 35408715 35408739 -182628419 + AT_rich Low_complexity Low_complexity 1 24 0 1220 228 36 65 chr3 35408743 35409356 -182627802 + L1MC5 LINE L1 7316 7910 -51 333 278 42 7 chr3 35410476 35410620 -182626538 + MER103 DNA DNA 11 159 -7 259 317 12 0 chr3 35410668 35410750 -182626408 - MIR3 SINE MIR -49 159 77 336 279 66 22 chr3 35412063 35412199 -182624959 + MER91A DNA MER1_type 1 142 -54 2161 212 16 18 chr3 35412656 35413157 -182624001 - MLT1D LTR MaLR -5 500 1 256 254 46 101 chr3 35413365 35413582 -182623576 - L1MC4 LINE L1 -9 8033 7829 377 215 99 84 chr3 35413626 35413817 -182623341 - L1ME2 LINE L1 -20 6144 5951 294 321 147 9 chr3 35414241 35414459 -182622699 + MIR SINE MIR 13 260 -2 393 317 44 11 chr3 35415382 35415562 -182621596 + LTR16C LTR ERVL 306 491 0 1009 306 70 25 chr3 35415570 35416069 -182621089 + L2 LINE L2 2554 3062 -251 7421 39 0 2 chr3 35416263 35417386 -182619772 + L1PA4 LINE L1 5032 6152 -3 1616 188 0 50 chr3 35417427 35417746 -182619412 + AluJo SINE Alu 1 303 -9 27 49 0 0 chr3 35417811 35417852 -182619306 + AT_rich Low_complexity Low_complexity 1 41 0 263 232 37 73 chr3 35417895 35418059 -182619099 + L1ME LINE L1 5547 5704 -417 2564 188 43 37 chr3 35419087 35419711 -182617447 - MER92B LTR ERV1 -8 628 1 1745 198 61 0 chr3 35419728 35420071 -182617087 - MLT1A1 LTR MaLR -1 364 1 622 263 202 25 chr3 35420085 35420442 -182616716 + MLT1J2 LTR MaLR 1 420 -30 225 283 0 0 chr3 35420524 35420577 -182616581 + MIR SINE MIR 210 262 0 220 302 103 32 chr3 35421406 35421532 -182615626 + MIR SINE MIR 20 154 -108 316 280 59 17 chr3 35421670 35421788 -182615370 - L2 LINE L2 -2 3311 3189 1252 256 116 11 chr3 35421818 35422197 -182614961 - LTR16C LTR ERVL -2 489 71 305 324 90 7 chr3 35422510 35422655 -182614503 - MIR SINE MIR -1 261 105 271 256 103 8 chr3 35423301 35423418 -182613740 - MIR SINE MIR -16 246 119 279 204 0 0 chr3 35424892 35424941 -182612217 - MIR3 SINE MIR -11 197 149 271 354 71 0 chr3 35425591 35425704 -182611454 - MIR SINE MIR -64 144 24 218 289 59 59 chr3 35426668 35426803 -182610355 - MIR SINE MIR -18 244 110 208 234 36 108 chr3 35426856 35426967 -182610191 - L2 LINE L2 -56 3257 3155 491 290 53 30 chr3 35428725 35428894 -182608264 + MIR SINE MIR 3 175 -87 23 33 0 0 chr3 35429208 35429238 -182607920 + AT_rich Low_complexity Low_complexity 1 30 0 1300 202 46 49 chr3 35429258 35429624 -182607534 - MLT1A1 LTR MaLR 0 365 1 7247 53 0 0 chr3 35429853 35430812 -182606346 - L1PA4 LINE L1 -4099 2047 1089 * 26147 32 2 5 chr3 35430809 35434912 -182602246 + L1PA4 LINE L1 2062 6152 -3 507 263 79 41 chr3 35435217 35435562 -182601596 - LTR18B LTR ERVL 0 614 1 242 340 123 0 chr3 35435565 35435727 -182601431 + L2 LINE L2 2472 2653 -661 592 162 188 0 chr3 35435733 35435850 -182601308 - FLAM_C SINE Alu -4 139 1 2134 203 22 18 chr3 35436073 35436521 -182600637 - LTR32 LTR ERVL 0 471 22 296 218 58 23 chr3 35436764 35436851 -182600307 + MLT1J2 LTR MaLR 361 450 0 659 298 110 21 chr3 35437056 35437482 -182599676 + LTR16B LTR ERVL 1 464 0 243 295 105 0 chr3 35437515 35437610 -182599548 - MIR SINE MIR -76 186 82 234 294 101 73 chr3 35437747 35437856 -182599302 + L2 LINE L2 3123 3234 -38 297 0 0 0 chr3 35438624 35438657 -182598501 + (A)n Simple_repeat Simple_repeat 1 33 0 962 190 42 118 chr3 35438711 35438948 -182598210 + AluJo SINE Alu 61 279 -33 311 0 26 0 chr3 35438948 35438987 -182598171 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 821 239 16 5 chr3 35439740 35439924 -182597234 + MER5A DNA MER1_type 2 187 -2 3950 67 0 2 chr3 35440285 35440805 -182596353 + LTR17 LTR ERV1 262 780 0 24499 48 4 7 chr3 35440860 35442777 -182594381 + HERV17 LTR ERV1 1953 3859 -4767 2240 62 66 3 chr3 35442777 35443065 -182594093 + AluY SINE Alu 1 306 -5 24499 48 4 7 chr3 35443065 35444268 -182592890 + HERV17 LTR ERV1 3859 5064 -3562 9951 53 0 23 chr3 35444262 35445586 -182591572 + HERV17 LTR ERV1 6902 8195 -431 * 605 102 0 31 chr3 35445581 35445679 -182591479 + HERV17 LTR ERV1 8161 8255 -371 * 6164 71 18 6 chr3 35445679 35446501 -182590657 + L1PA7 LINE L1 5310 6141 -13 614 13 0 13 chr3 35446504 35446580 -182590578 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 452 309 93 10 chr3 35446688 35446882 -182590276 - MIR SINE MIR -51 211 2 329 248 271 43 chr3 35447163 35447421 -182589737 + MER113 DNA MER1_type? 171 487 -34 252 241 0 0 chr3 35448503 35448557 -182588601 - MLT1H LTR MaLR 0 549 496 452 311 63 60 chr3 35448594 35448896 -182588262 - MLT1H LTR MaLR -197 352 50 333 47 0 0 chr3 35449330 35449373 -182587785 + MADE1 DNA Mariner 3 45 -35 22 35 0 0 chr3 35449804 35449833 -182587325 + AT_rich Low_complexity Low_complexity 1 29 0 2166 120 9 22 chr3 35450446 35450763 -182586395 - AluSp SINE Alu 0 313 1 566 253 96 111 chr3 35451008 35451590 -182585568 - MLT1G LTR MaLR -24 531 1 229 361 46 32 chr3 35452378 35452594 -182584564 - MLT1J LTR MaLR -54 457 239 262 330 52 17 chr3 35452850 35452965 -182584193 + MIR SINE MIR 29 147 -61 251 315 203 10 chr3 35453351 35453548 -182583610 + MLT1L LTR MaLR 369 603 -12 241 264 217 28 chr3 35453602 35453708 -182583450 - MER5A DNA MER1_type -7 182 57 191 300 20 0 chr3 35453773 35453823 -182583335 + MIR SINE MIR 83 133 -75 441 0 0 0 chr3 35454228 35454277 -182582881 + (TG)n Simple_repeat Simple_repeat 2 50 0 1370 105 0 0 chr3 35454307 35454478 -182582680 - AluSq SINE Alu -142 171 1 3131 99 46 0 chr3 35455422 35455855 -182581303 + MLT2A2 LTR ERVL 1 453 0 254 211 0 39 chr3 35456555 35456607 -182580551 + MIR3 SINE MIR 118 167 -41 * 552 239 101 38 chr3 35456603 35456762 -182580396 + MER5B DNA MER1_type 7 175 -3 399 236 150 50 chr3 35456934 35457074 -182580084 + MLT1E LTR MaLR 97 250 -343 807 220 37 50 chr3 35457079 35457320 -182579838 + MLT1A1 LTR MaLR 1 238 -127 206 303 158 0 chr3 35457326 35457402 -182579756 + MIR3 SINE MIR 114 201 -7 607 296 13 48 chr3 35457434 35457664 -182579494 + MIR SINE MIR 23 244 -18 976 176 0 0 chr3 35459515 35459697 -182577461 + L1MB1 LINE L1 5986 6167 -1 27 0 0 0 chr3 35459947 35459974 -182577184 + AT_rich Low_complexity Low_complexity 1 27 0 784 241 80 63 chr3 35459994 35460081 -182577077 + L1ME LINE L1 5354 5438 -683 2535 63 0 0 chr3 35460081 35460383 -182576775 - AluY SINE Alu -9 302 1 784 241 80 63 chr3 35460383 35460756 -182576402 + L1ME LINE L1 5438 5822 -299 340 250 50 6 chr3 35461421 35461581 -182575577 - MLT1H1 LTR MaLR 0 555 383 1859 248 35 30 chr3 35461718 35462283 -182574875 - MER74B LTR ERVL 0 622 55 865 216 124 66 chr3 35462617 35462965 -182574193 - LTR16A1 LTR ERVL 0 457 90 1813 199 17 6 chr3 35462966 35463327 -182573831 - MLT1A1 LTR MaLR 0 365 1 211 324 15 0 chr3 35464880 35464948 -182572210 + CT-rich Low_complexity Low_complexity 4 72 0 337 165 24 82 chr3 35465416 35465501 -182571657 + MER116 DNA Mariner 1 80 0 1001 275 70 31 chr3 35466691 35467135 -182570023 - LTR16C LTR ERVL -30 461 1 1792 175 189 16 chr3 35467631 35468060 -182569098 + MLT1D LTR MaLR 1 503 -2 888 213 12 0 chr3 35468269 35468429 -182568729 + MIR SINE MIR 4 165 -97 1557 188 151 10 chr3 35468432 35468836 -182568322 + MLT1C LTR MaLR 6 466 -1 236 273 81 30 chr3 35468837 35468936 -182568222 + MIR SINE MIR 159 262 0 1028 214 14 37 chr3 35469068 35469283 -182567875 - AluJo SINE Alu -102 210 1 294 324 0 0 chr3 35469429 35469500 -182567658 + Charlie1 DNA MER1_type 1 71 -2690 1494 175 55 18 chr3 35469500 35469901 -182567257 + Charlie1 DNA MER1_type 2344 2759 -2 428 214 34 0 chr3 35471621 35471710 -182565448 + L2 LINE L2 3220 3311 -2 450 65 0 0 chr3 35472392 35472454 -182564704 + (TC)n Simple_repeat Simple_repeat 2 63 0 3164 90 44 2 chr3 35472797 35473232 -182563926 + MLT2A2 LTR ERVL 1 453 0 23 0 0 0 chr3 35473932 35473955 -182563203 + AT_rich Low_complexity Low_complexity 1 23 0 575 266 72 87 chr3 35474031 35474490 -182562668 - LTR16A1 LTR ERVL -4 453 2 2315 184 14 16 chr3 35474696 35475195 -182561963 + L1MD3 LINE L1 7498 7995 0 188 146 49 0 chr3 35475386 35475427 -182561731 + GA-rich Low_complexity Low_complexity 3 45 0 379 302 77 12 chr3 35476176 35476345 -182560813 - MIR SINE MIR -1 261 82 631 294 58 22 chr3 35476588 35476948 -182560210 + L1ME4a LINE L1 5532 5904 -217 2406 104 62 3 chr3 35476957 35477313 -182559845 - MER51B LTR ERV1 0 377 1 9281 120 66 19 chr3 35477315 35477571 -182559587 - MER51B-int LTR ERV1 -1 7815 7572 2070 110 21 10 chr3 35477571 35477862 -182559296 - AluSg1 SINE Alu -15 294 1 9281 120 66 19 chr3 35477862 35479530 -182557628 - MER51B-int LTR ERV1 -244 7572 5620 347 161 108 21 chr3 35479520 35479613 -182557545 - MER51B-int LTR ERV1 -2188 5349 5249 * 2231 88 132 3 chr3 35479612 35479998 -182557160 - MER51B-int LTR ERV1 -2572 2645 2210 1771 161 55 5 chr3 35480007 35480465 -182556693 - MER51B-int LTR ERV1 -2774 3172 1474 * 8262 100 65 0 chr3 35480450 35481873 -182555285 - MER51B-int LTR ERV1 -4501 3315 1801 596 168 71 54 chr3 35481873 35482070 -182555088 - MER4A LTR ERV1 -130 534 276 243 188 0 0 chr3 35482075 35482123 -182555035 - MER4A LTR ERV1 -566 98 51 4574 116 17 19 chr3 35482139 35483440 -182553718 - MER51B-int LTR ERV1 -6321 1495 1 2447 103 56 3 chr3 35483440 35483798 -182553360 - MER51B LTR ERV1 0 377 1 321 219 106 41 chr3 35483956 35484079 -182553079 + L1ME4a LINE L1 5977 6107 -14 4122 98 8 90 chr3 35484798 35485520 -182551638 - MER4A LTR ERV1 0 664 2 467 183 11 0 chr3 35485728 35485821 -182551337 - LTR16A1 LTR ERVL -19 438 345 264 252 55 71 chr3 35486217 35486426 -182550732 + LTR36 LTR ERV1 400 556 0 444 301 9 69 chr3 35486550 35486766 -182550392 - LTR16A1 LTR ERVL -236 221 19 233 250 27 36 chr3 35486908 35487020 -182550138 - L1M4 LINE L1 -2667 3479 3369 1234 305 109 4 chr3 35487536 35488058 -182549100 + MLT2F LTR ERVL 19 595 -68 563 318 12 6 chr3 35488614 35488787 -182548371 + G-rich Low_complexity Low_complexity 2 175 0 2212 117 3 3 chr3 35488787 35489078 -182548080 - AluSq SINE Alu -22 291 1 438 261 46 15 chr3 35489465 35489595 -182547563 - MIR3 SINE MIR -7 201 68 240 169 99 14 chr3 35490479 35490550 -182546608 - MLT1H LTR MaLR -12 583 507 249 264 91 41 chr3 35490575 35490696 -182546462 - MLT1H LTR MaLR -185 364 238 2588 94 92 8 chr3 35490706 35491194 -182545964 + MER11A LTR ERVK 1 529 -737 631 269 118 41 chr3 35491310 35491441 -182545717 - MLT1H LTR MaLR -185 364 244 4751 170 24 56 chr3 35491441 35492547 -182544611 + MER11C LTR ERVK 1 1071 0 631 269 118 41 chr3 35492547 35492753 -182544405 - MLT1H LTR MaLR -305 244 1 12957 220 24 33 chr3 35492882 35498206 -182538952 - L1PA16 LINE L1 -21 6202 793 307 260 24 32 chr3 35498986 35499109 -182538049 - MLT1K LTR MaLR -160 428 307 1638 215 71 56 chr3 35499863 35500608 -182536550 + L1MC5 LINE L1 6768 7523 -438 422 273 32 39 chr3 35500772 35500926 -182536232 + L1ME3A LINE L1 5975 6127 -43 216 204 0 0 chr3 35501080 35501124 -182536034 + A-rich Low_complexity Low_complexity 1 44 0 320 359 26 13 chr3 35501709 35501943 -182535215 + MLT1H LTR MaLR 21 257 -292 510 324 33 22 chr3 35503117 35503299 -182533859 - MIR SINE MIR -17 245 62 231 281 31 0 chr3 35503468 35503532 -182533626 - L2 LINE L2 0 3272 3207 326 322 42 111 chr3 35504276 35504680 -182532478 - L2 LINE L2 0 3272 2897 292 197 61 0 chr3 35505463 35505529 -182531629 - MLT1L LTR MaLR 0 615 546 617 242 57 44 chr3 35505543 35505770 -182531388 + MLT1J2 LTR MaLR 7 236 -214 463 270 96 103 chr3 35506004 35506325 -182530833 - MLT1L LTR MaLR -166 449 130 1865 161 143 11 chr3 35506325 35506703 -182530455 - MSTA LTR MaLR 0 428 1 463 270 96 103 chr3 35506703 35506818 -182530340 - MLT1L LTR MaLR -485 130 16 580 310 25 15 chr3 35507647 35507890 -182529268 - MIR SINE MIR -17 245 4 787 226 89 5 chr3 35508799 35508989 -182528169 + MER58A DNA MER1_type 13 218 -6 22 35 0 0 chr3 35509085 35509114 -182528044 + AT_rich Low_complexity Low_complexity 1 29 0 2092 152 0 0 chr3 35509307 35509609 -182527549 + AluSx SINE Alu 1 302 -10 246 211 99 0 chr3 35510079 35510150 -182527008 - MIR SINE MIR -58 204 127 293 236 24 126 chr3 35510182 35510250 -182526908 - MER81 DNA DNA 0 114 63 2420 80 0 0 chr3 35510250 35510602 -182526556 + AluY SINE Alu 1 311 0 293 236 24 126 chr3 35510602 35510660 -182526498 - MER81 DNA DNA -51 63 1 560 211 15 38 chr3 35511410 35511543 -182525615 + L2 LINE L2 2231 2360 -954 662 210 7 0 chr3 35511564 35511707 -182525451 - MER77 LTR ERV1 0 605 462 1826 279 82 10 chr3 35511724 35512598 -182524560 + L2 LINE L2 2366 3313 0 1010 195 11 0 chr3 35512595 35512769 -182524389 + MER5A DNA MER1_type 14 189 0 * 237 347 32 32 chr3 35514283 35514407 -182522751 + MIR SINE MIR 1 124 -84 334 258 258 15 chr3 35514443 35514575 -182522583 - MER5B DNA MER1_type -14 164 1 817 163 0 0 chr3 35516289 35516424 -182520734 + AluSp/q SINE Alu 172 306 -7 2114 136 0 3 chr3 35516563 35516865 -182520293 - AluSx SINE Alu -10 302 2 303 319 85 14 chr3 35517425 35517566 -182519592 - MIR SINE MIR -93 169 19 1714 188 39 15 chr3 35519797 35520132 -182517026 - MER61A LTR ERV1 0 343 1 331 230 27 0 chr3 35520303 35520377 -182516781 + MIR3 SINE MIR 93 168 -40 231 333 39 10 chr3 35520841 35520943 -182516215 + MER102a DNA MER1_type 1 105 -225 250 265 41 0 chr3 35521013 35521111 -182516047 + MER102a DNA MER1_type 229 330 0 254 244 22 56 chr3 35522734 35522824 -182514334 - MIR SINE MIR -12 250 164 319 246 104 45 chr3 35523301 35523435 -182513723 - MIR SINE MIR -11 251 110 311 276 86 9 chr3 35523642 35523747 -182513411 - L2 LINE L2 -8 3305 3193 807 168 43 48 chr3 35524273 35524482 -182512676 + MER33 DNA MER1_type 25 232 -92 343 262 75 9 chr3 35525274 35525381 -182511777 + MIR SINE MIR 84 197 -65 747 172 86 0 chr3 35525555 35525741 -182511417 - L1MD3 LINE L1 -22 7973 7772 * 1024 224 59 30 chr3 35525738 35526144 -182511014 - L1MC4a LINE L1 -577 7231 6814 295 305 141 14 chr3 35526393 35526651 -182510507 - L1MCb LINE L1 -5756 666 264 235 315 124 0 chr3 35527124 35527213 -182509945 - L2 LINE L2 -22 3250 3151 646 294 158 41 chr3 35527338 35527757 -182509401 - LTR16C LTR ERVL -23 468 1 210 302 115 0 chr3 35527761 35527857 -182509301 - L2 LINE L2 -242 3030 2924 3786 282 119 22 chr3 35528079 35529620 -182507538 - L2 LINE L2 -716 2598 909 209 291 104 8 chr3 35530610 35530744 -182506414 - MIR SINE MIR -110 152 6 636 228 114 7 chr3 35531449 35531598 -182505560 - MER5A DNA MER1_type -6 183 19 1221 218 127 6 chr3 35531972 35532311 -182504847 - L1ME1 LINE L1 -5 6161 5782 22 70 0 0 chr3 35532516 35532559 -182504599 + AT_rich Low_complexity Low_complexity 1 43 0 31 26 0 0 chr3 35532582 35532620 -182504538 + AT_rich Low_complexity Low_complexity 1 38 0 6531 7 1 0 chr3 35533359 35534124 -182503034 + L1HS LINE L1 5390 6155 0 195 114 0 0 chr3 35534125 35534160 -182502998 + (A)n Simple_repeat Simple_repeat 1 35 0 2417 199 14 3 chr3 35534271 35534924 -182502234 + L1HS LINE L1 5496 6155 0 366 74 0 0 chr3 35534931 35534985 -182502173 + (A)n Simple_repeat Simple_repeat 1 54 0 264 274 12 0 chr3 35535176 35535260 -182501898 + L1ME LINE L1 5726 5810 -354 1028 207 22 14 chr3 35535283 35535505 -182501653 - MER58A DNA MER1_type 0 224 1 538 252 161 0 chr3 35537613 35537768 -182499390 + MER5A DNA MER1_type 9 188 -1 320 200 139 73 chr3 35539347 35539512 -182497646 + MLT1K LTR MaLR 394 569 -19 243 232 0 18 chr3 35539842 35539898 -182497260 - MIR SINE MIR -133 129 75 2406 77 17 0 chr3 35540181 35540480 -182496678 + AluSq SINE Alu 3 306 -7 273 251 146 96 chr3 35540695 35540914 -182496244 + MIR SINE MIR 20 249 -13 488 89 13 0 chr3 35541696 35541775 -182495383 + (TG)n Simple_repeat Simple_repeat 2 81 0 230 326 82 5 chr3 35542836 35543020 -182494138 - LTR16C LTR ERVL -67 424 227 2339 104 0 0 chr3 35543131 35543438 -182493720 + AluSx SINE Alu 1 307 -5 360 338 19 25 chr3 35543582 35543742 -182493416 - MIR SINE MIR -86 176 18 1661 250 128 13 chr3 35544946 35545478 -182491680 + MLT1E LTR MaLR 1 593 0 650 303 86 52 chr3 35545574 35545898 -182491260 + MLT1H LTR MaLR 215 549 0 2375 106 0 0 chr3 35550195 35550498 -182486660 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr3 35551821 35551843 -182485315 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 35552810 35552838 -182484320 + AT_rich Low_complexity Low_complexity 1 28 0 348 230 42 48 chr3 35553699 35553864 -182483294 + MER103 DNA DNA 3 166 0 2235 110 10 16 chr3 35554250 35554560 -182482598 + AluSx SINE Alu 1 308 -4 871 320 15 7 chr3 35556105 35556377 -182480781 + LTR16C LTR ERVL 88 361 -130 22 35 0 0 chr3 35556908 35556937 -182480221 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr3 35557741 35557775 -182479383 + (TTA)n Simple_repeat Simple_repeat 3 36 0 630 197 8 16 chr3 35557776 35557898 -182479260 - FLAM_C SINE Alu -22 121 1 30 0 0 0 chr3 35557900 35557930 -182479228 + AT_rich Low_complexity Low_complexity 1 30 0 4290 111 18 0 chr3 35558043 35558785 -182478373 - L1P4 LINE L1 -735 5433 4680 798 226 119 18 chr3 35559589 35559815 -182477343 - MIR SINE MIR -12 250 2 2226 107 3 22 chr3 35560806 35561124 -182476034 - AluSx SINE Alu 0 312 1 21 57 0 0 chr3 35561367 35561402 -182475756 + AT_rich Low_complexity Low_complexity 1 35 0 1486 243 57 33 chr3 35561534 35561862 -182475296 + L1ME3 LINE L1 5602 5950 -212 2315 118 11 32 chr3 35561862 35562234 -182474924 + THE1B LTR MaLR 1 364 0 1486 243 57 33 chr3 35562234 35562445 -182474713 + L1ME3 LINE L1 5950 6154 -8 21 57 0 0 chr3 35562445 35562480 -182474678 + AT_rich Low_complexity Low_complexity 1 35 0 1501 106 53 39 chr3 35562615 35562899 -182474259 + THE1C LTR MaLR 88 375 0 194 405 67 0 chr3 35563805 35563894 -182473264 - L2 LINE L2 -231 3041 2947 450 275 121 62 chr3 35564201 35564645 -182472513 - L2 LINE L2 -191 3081 2612 515 295 161 5 chr3 35564895 35565112 -182472046 - MIR SINE MIR 0 262 12 250 310 0 0 chr3 35566839 35566910 -182470248 + MER5A DNA MER1_type 12 82 -107 444 225 163 31 chr3 35567038 35567198 -182469960 + MER5A DNA MER1_type 9 189 0 270 229 12 36 chr3 35567210 35567293 -182469865 - MER5B DNA MER1_type 0 178 98 338 256 30 11 chr3 35567295 35567433 -182469725 - MER91A DNA MER1_type -4 192 1 207 0 0 0 chr3 35567499 35567522 -182469636 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 675 203 51 83 chr3 35567533 35567823 -182469335 - L1MC5 LINE L1 -34 7927 7648 1978 154 11 45 chr3 35567823 35568180 -182468978 - MER7A DNA MER2_type -2 344 2 675 203 51 83 chr3 35568180 35568239 -182468919 - L1MC5 LINE L1 -313 7648 7589 2112 219 56 76 chr3 35568380 35568542 -182468616 - L1MC5 LINE L1 -465 7496 7332 948 243 23 0 chr3 35568542 35568760 -182468398 - MER58A DNA MER1_type 0 224 2 2112 219 56 76 chr3 35568760 35569527 -182467631 - L1MC5 LINE L1 -629 7332 6558 336 326 96 41 chr3 35570171 35570389 -182466769 - L2 LINE L2 -5 3267 3038 251 313 70 43 chr3 35571918 35572033 -182465125 - MIR3 SINE MIR -6 202 85 367 248 166 73 chr3 35573471 35573773 -182463385 + MLT1I LTR MaLR 70 399 -10 2226 108 3 0 chr3 35573991 35574286 -182462872 + AluSp SINE Alu 1 296 -17 273 309 122 16 chr3 35575404 35575527 -182461631 - MIR SINE MIR -32 230 95 735 144 8 23 chr3 35575636 35575768 -182461390 + FLAM_C SINE Alu 2 131 -2 278 267 22 33 chr3 35575800 35575890 -182461268 - MIR SINE MIR -96 166 78 2509 71 0 0 chr3 35576602 35576910 -182460248 - AluY SINE Alu -3 308 1 736 241 148 67 chr3 35578420 35579142 -182458016 + LTR41 LTR ERVL 1 795 0 2487 309 69 48 chr3 35579777 35581206 -182455952 + ERVL LTR ERVL 765 2223 -3541 445 267 0 9 chr3 35581210 35581315 -182455843 + L2 LINE L2 3210 3313 0 203 143 0 24 chr3 35582915 35582957 -182454201 + (TTTCC)n Simple_repeat Simple_repeat 4 44 0 26 30 0 0 chr3 35584133 35584166 -182452992 + AT_rich Low_complexity Low_complexity 1 33 0 258 202 140 61 chr3 35584353 35584467 -182452691 - MER112 DNA MER1_type -6 254 132 225 246 0 0 chr3 35584570 35584635 -182452523 + CT-rich Low_complexity Low_complexity 2 66 0 581 311 30 33 chr3 35584635 35584969 -182452189 - L1MC4a LINE L1 -1870 5938 5606 256 276 102 10 chr3 35584991 35585089 -182452069 - L1MC4a LINE L1 -2247 5561 5455 1766 136 0 0 chr3 35585236 35585486 -182451672 - AluJb SINE Alu -28 284 35 231 67 0 0 chr3 35586233 35586263 -182450895 - MIR SINE MIR -114 148 119 988 208 0 5 chr3 35586263 35586470 -182450688 + MLT1A1 LTR MaLR 1 206 -159 192 389 11 11 chr3 35587385 35587475 -182449683 - L2 LINE L2 -369 2903 2814 235 256 66 5 chr3 35587574 35587645 -182449513 + MIR SINE MIR 80 143 -65 506 260 34 38 chr3 35588232 35588467 -182448691 + LTR37B LTR ERV1 176 409 -59 58 15 0 0 chr3 35589570 35589635 -182447523 + AT_rich Low_complexity Low_complexity 1 65 0 9461 148 24 10 chr3 35589806 35591368 -182445790 + Tigger1 DNA MER2_type 1 1584 -834 347 279 9 0 chr3 35591370 35591481 -182445677 + L1PB1 LINE L1 79 190 -6673 * 13944 198 35 22 chr3 35591461 35593538 -182443620 + L1PB1 LINE L1 872 2921 -3946 2518 66 3 0 chr3 35593538 35593839 -182443319 + AluY SINE Alu 1 302 -9 13944 198 35 22 chr3 35593839 35595720 -182441438 + L1PB1 LINE L1 2921 4776 -2091 2263 92 0 0 chr3 35595720 35596062 -182441096 + AluSc SINE Alu 1 342 0 13944 198 35 22 chr3 35596062 35597490 -182439668 + L1PB1 LINE L1 4776 6512 -355 450 0 0 0 chr3 35597490 35597540 -182439618 + (TA)n Simple_repeat Simple_repeat 2 51 0 13944 198 35 22 chr3 35597540 35597846 -182439312 + L1PB1 LINE L1 6512 6813 -54 25 0 0 0 chr3 35597869 35597894 -182439264 + AT_rich Low_complexity Low_complexity 1 25 0 4969 141 19 2 chr3 35597901 35598703 -182438455 + Tigger1 DNA MER2_type 1603 2417 -1 1084 241 74 27 chr3 35599673 35600076 -182437082 - MER113 DNA MER1_type? -96 425 4 23 0 0 0 chr3 35600669 35600692 -182436466 + AT_rich Low_complexity Low_complexity 1 23 0 2114 125 0 0 chr3 35601184 35601480 -182435678 + AluSx SINE Alu 1 296 -16 1783 112 0 0 chr3 35602334 35602590 -182434568 + AluSx SINE Alu 52 307 0 2373 74 3 3 chr3 35603914 35604212 -182432946 - AluY SINE Alu -13 298 1 188 170 21 21 chr3 35604742 35604789 -182432369 + MER5C DNA MER1_type 273 319 -5 603 209 162 11 chr3 35604947 35605225 -182431933 - MER33 DNA MER1_type -1 323 4 417 297 54 0 chr3 35605635 35605746 -182431412 - L2 LINE L2 0 3313 3197 264 30 0 0 chr3 35606936 35606969 -182430189 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2107 116 3 0 chr3 35607238 35607531 -182429627 + AluSq SINE Alu 1 294 -19 863 95 16 166 chr3 35608446 35608546 -182428612 - L1M2 LINE L1 -642 5658 5606 2057 123 10 3 chr3 35608546 35608847 -182428311 - AluSc SINE Alu -6 303 1 863 95 16 166 chr3 35608847 35608965 -182428193 - L1M2 LINE L1 -694 5606 5472 327 238 129 20 chr3 35609241 35609342 -182427816 + MIR SINE MIR 7 119 -89 9047 54 3 1 chr3 35609555 35610712 -182426446 - L1P LINE L1 -1097 5049 3891 27 29 0 0 chr3 35611032 35611066 -182426092 + AT_rich Low_complexity Low_complexity 1 34 0 195 42 0 0 chr3 35611856 35611880 -182425278 + (T)n Simple_repeat Simple_repeat 1 24 0 1426 260 2 4 chr3 35611893 35612354 -182424804 - L1PA2 LINE L1 0 6155 5696 413 181 86 29 chr3 35613259 35613364 -182423794 - L2 LINE L2 -33 3280 3170 204 40 0 0 chr3 35613366 35613391 -182423767 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2525 72 20 80 chr3 35614426 35614826 -182422332 + MER51B LTR ERV1 2 377 0 806 156 0 7 chr3 35615070 35615205 -182421953 + MER4D LTR ERV1 1 134 -769 589 258 0 0 chr3 35615600 35615720 -182421438 - FLAM_A SINE Alu -13 120 1 2232 136 0 0 chr3 35616452 35616761 -182420397 + AluSx SINE Alu 1 309 -3 2025 144 3 3 chr3 35616766 35617058 -182420100 + AluSx SINE Alu 1 292 -20 329 115 0 33 chr3 35617061 35617122 -182420036 + (GGGAA)n Simple_repeat Simple_repeat 4 62 0 1205 275 126 29 chr3 35617417 35617772 -182419386 + L2 LINE L2 2588 2907 -406 2143 144 40 80 chr3 35617772 35618224 -182418934 - Tigger2a DNA MER2_type 0 434 1 1205 275 126 29 chr3 35618224 35618505 -182418653 + L2 LINE L2 2907 3312 -1 934 189 46 166 chr3 35618584 35618728 -182418430 + L1M4 LINE L1 4615 4775 -1371 1204 104 38 104 chr3 35618728 35619016 -182418142 + L1MA8 LINE L1 6017 6285 -6 934 189 46 166 chr3 35619016 35619120 -182418038 + L1M4 LINE L1 4775 4890 -1256 4049 154 32 3 chr3 35619120 35619873 -182417285 + L1MA4 LINE L1 5514 6288 -12 934 189 46 166 chr3 35619873 35620334 -182416824 + L1M4 LINE L1 4890 5240 -906 1958 126 25 0 chr3 35622328 35622605 -182414553 + AluSx SINE Alu 1 284 -28 205 196 39 0 chr3 35622791 35622842 -182414316 + CT-rich Low_complexity Low_complexity 3 55 0 6094 127 27 18 chr3 35623036 35623162 -182413996 - L1 LINE L1 -3490 4075 3952 1826 159 47 16 chr3 35623162 35623526 -182413632 + THE1C LTR MaLR 1 375 0 6094 127 27 18 chr3 35623526 35624383 -182412775 - L1 LINE L1 -3613 3952 3074 2416 78 0 0 chr3 35624383 35624677 -182412481 - AluY SINE Alu -17 294 1 6094 127 27 18 chr3 35624677 35625127 -182412031 - L1 LINE L1 -4491 3074 2630 959 235 59 29 chr3 35625196 35625434 -182411724 - MIR SINE MIR 0 262 18 2725 125 0 2 chr3 35625492 35625901 -182411257 + MSTA LTR MaLR 21 428 0 23 68 0 0 chr3 35626191 35626235 -182410923 + AT_rich Low_complexity Low_complexity 1 44 0 766 270 126 18 chr3 35626248 35626574 -182410584 - L2 LINE L2 -1 3312 2952 322 278 87 9 chr3 35626884 35626999 -182410159 - L2 LINE L2 -261 3011 2888 1688 139 27 4 chr3 35627134 35627392 -182409766 + AluSx SINE Alu 19 282 -30 777 271 50 25 chr3 35627936 35628213 -182408945 + MLT1J LTR MaLR 107 390 -121 363 214 43 3 chr3 35628231 35628332 -182408826 - MIR SINE MIR -89 119 7 1632 109 9 102 chr3 35628622 35628724 -182408434 + L1MA4 LINE L1 5488 5598 -702 2350 86 10 3 chr3 35628724 35629027 -182408131 + AluSc SINE Alu 1 305 -4 1632 109 9 102 chr3 35629027 35629246 -182407912 + L1MA4 LINE L1 5598 5779 -521 834 128 5 64 chr3 35629250 35629437 -182407721 + L1MA4 LINE L1 6119 6294 -6 29 60 0 0 chr3 35629437 35629487 -182407671 + AT_rich Low_complexity Low_complexity 1 50 0 472 230 43 22 chr3 35629532 35629671 -182407487 - MER58B DNA MER1_type -10 331 190 21 82 0 0 chr3 35630635 35630684 -182406474 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 35632193 35632214 -182404944 + AT_rich Low_complexity Low_complexity 1 21 0 2280 85 0 10 chr3 35633929 35634224 -182402934 + AluY SINE Alu 1 292 -19 265 250 0 18 chr3 35634425 35634481 -182402677 + L2 LINE L2 3204 3258 -14 253 193 0 35 chr3 35634432 35634489 -182402669 + MIR SINE MIR 206 260 -2 * 2432 245 61 21 chr3 35635384 35636256 -182400902 + L1ME2 LINE L1 5258 6164 0 550 281 4 71 chr3 35637096 35637363 -182399795 + MLT2C1 LTR ERVL 128 376 -21 223 340 219 21 chr3 35637609 35637888 -182399270 - L2 LINE L2 -767 2547 2214 556 248 25 8 chr3 35638320 35638441 -182398717 + L2 LINE L2 3189 3311 -2 726 84 0 0 chr3 35639374 35639469 -182397689 + AluY SINE Alu 209 303 -8 345 335 35 12 chr3 35639633 35639804 -182397354 + MIR SINE MIR 23 196 -66 224 179 75 30 chr3 35641811 35641878 -182395280 - MIR SINE MIR -65 197 128 616 196 20 13 chr3 35641986 35642139 -182395019 + L1MC5 LINE L1 7717 7870 -91 330 250 130 0 chr3 35643851 35643959 -182393199 + MIR SINE MIR 128 249 -13 470 327 146 11 chr3 35644000 35644349 -182392809 + L2 LINE L2 2489 2884 -430 225 0 0 0 chr3 35644437 35644462 -182392696 + (T)n Simple_repeat Simple_repeat 1 25 0 309 312 104 8 chr3 35644663 35644788 -182392370 + L2 LINE L2 3136 3272 0 2230 58 41 7 chr3 35644958 35645250 -182391908 - AluY SINE Alu -9 302 1 253 385 120 5 chr3 35646455 35646647 -182390511 + L2 LINE L2 2899 3112 -160 336 317 10 0 chr3 35646716 35646817 -182390341 - MIR SINE MIR 0 262 161 1651 223 61 23 chr3 35646837 35647277 -182389881 + LTR2B LTR ERV1 34 490 0 255 319 217 29 chr3 35647277 35647415 -182389743 - MIR SINE MIR -98 164 1 553 328 20 44 chr3 35647825 35647995 -182389163 - MIR SINE MIR -1 261 97 2238 117 0 22 chr3 35647995 35648311 -182388847 - AluSq SINE Alu -4 309 1 553 328 20 44 chr3 35648311 35648390 -182388768 - MIR SINE MIR -165 97 18 1416 173 81 16 chr3 35648413 35648633 -182388525 - L1P LINE L1 -1803 4343 4096 894 45 0 0 chr3 35648633 35648744 -182388414 - L1PA4 LINE L1 0 6155 6045 1416 173 81 16 chr3 35648744 35648830 -182388328 - L1P LINE L1 -2050 4096 4017 6093 99 11 3 chr3 35648830 35649626 -182387532 + L1PA13 LINE L1 4351 5139 -1024 2255 99 3 10 chr3 35649626 35649939 -182387219 + AluY SINE Alu 1 311 0 6093 99 11 3 chr3 35649939 35650960 -182386198 + L1PA13 LINE L1 5139 6159 -4 846 261 133 38 chr3 35651357 35651809 -182385349 - L2 LINE L2 0 3313 2819 1913 123 29 0 chr3 35652713 35653016 -182384142 + AluSx SINE Alu 1 311 0 24 32 0 0 chr3 35653032 35653063 -182384095 + AT_rich Low_complexity Low_complexity 1 31 0 6809 30 0 1 chr3 35654022 35654884 -182382274 + L1P LINE L1 4442 5302 -844 862 163 0 7 chr3 35654898 35655051 -182382107 - MLT1A1 LTR MaLR -213 152 1 197 218 10 183 chr3 35655155 35655352 -182381806 - L2 LINE L2 -97 3216 3054 254 214 12 0 chr3 35656870 35656954 -182380204 + (TG)n Simple_repeat Simple_repeat 2 86 0 329 280 80 84 chr3 35657414 35657653 -182379505 - L2 LINE L2 -785 2529 2292 418 214 67 22 chr3 35657953 35658131 -182379027 + MER53 DNA DNA 4 189 0 1619 160 82 130 chr3 35658636 35658965 -182378193 + LTR49 LTR ERV1 1 287 -308 2048 166 68 36 chr3 35658965 35659380 -182377778 - MSTC LTR MaLR 0 428 1 1619 160 82 130 chr3 35659380 35659675 -182377483 + LTR49 LTR ERV1 287 595 0 2095 93 25 3 chr3 35659870 35660193 -182376965 + MER51B LTR ERV1 48 377 0 4656 158 50 8 chr3 35660436 35661303 -182375855 + MER4D LTR ERV1 1 903 0 2284 132 91 5 chr3 35662572 35662966 -182374192 - MSTA LTR MaLR 0 428 1 248 197 15 45 chr3 35663403 35663469 -182373689 + MLT1J2 LTR MaLR 99 162 -288 614 293 148 27 chr3 35663488 35663785 -182373373 + MLT1G1 LTR MaLR 230 562 -33 887 110 123 7 chr3 35664022 35664176 -182372982 + MER4E LTR ERV1 1 172 -594 2059 133 141 3 chr3 35664177 35664553 -182372605 - MSTA LTR MaLR 0 428 1 621 213 25 6 chr3 35664553 35664713 -182372445 + L1ME4a LINE L1 3622 3784 -2362 1994 153 26 0 chr3 35664713 35665059 -182372099 - MER44D DNA MER2_type 0 605 196 783 246 33 33 chr3 35665239 35665544 -182371614 + L1ME4a LINE L1 3786 4090 -2056 2766 197 27 24 chr3 35665579 35666249 -182370909 + MER67C LTR ERV1 39 710 0 1793 223 19 10 chr3 35666256 35666740 -182370418 + L1ME4a LINE L1 4069 4556 -1590 1409 206 129 45 chr3 35666740 35667206 -182369952 - MLT1D LTR MaLR 0 505 1 1139 187 51 12 chr3 35667211 35668181 -182368977 + L1ME4a LINE L1 4566 5619 -565 1057 231 56 36 chr3 35668181 35668484 -182368674 + MER76 LTR ERV 1 309 -379 2076 113 7 0 chr3 35668690 35668997 -182368161 + AluSx SINE Alu 1 309 0 253 252 50 22 chr3 35669096 35669235 -182367923 + L1ME4a LINE L1 5977 6119 -2 278 294 185 60 chr3 35670081 35670449 -182366709 + L2 LINE L2 1990 2403 -911 1006 184 77 4 chr3 35670463 35670696 -182366462 + MLT1C LTR MaLR 3 252 -215 297 270 132 26 chr3 35671294 35671446 -182365712 + MIR SINE MIR 95 262 0 3531 74 0 0 chr3 35671495 35671939 -182365219 - MLT2A1 LTR ERVL 0 444 1 226 327 20 0 chr3 35672066 35672167 -182364991 - LTR67 LTR ERVL -50 507 405 493 328 12 41 chr3 35672271 35672515 -182364643 - LTR67 LTR ERVL -319 238 2 2251 75 0 46 chr3 35672567 35672873 -182364285 - AluY SINE Alu -19 292 1 225 159 0 0 chr3 35672883 35672927 -182364231 + GA-rich Low_complexity Low_complexity 2 45 0 264 59 0 0 chr3 35673571 35673605 -182363553 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 228 205 0 0 chr3 35673606 35673645 -182363513 - L2 LINE L2 -12 3260 3222 718 303 122 3 chr3 35673657 35673961 -182363197 - L2 LINE L2 -1608 1706 1367 10465 166 73 22 chr3 35675170 35680212 -182356946 + L1PA12 LINE L1 230 6063 -162 10465 150 32 42 chr3 35680212 35682829 -182354329 + L1PA12 LINE L1 3611 6224 -1 10465 166 73 22 chr3 35682829 35683000 -182354158 + L1PA12 LINE L1 6063 6224 -1 4311 72 40 9 chr3 35683000 35684089 -182353069 - MER11A LTR ERVK 0 1266 5 1512 115 4 47 chr3 35684089 35684342 -182352816 + L1PB2 LINE L1 5903 6144 -7 420 20 0 0 chr3 35685392 35685441 -182351717 + (TG)n Simple_repeat Simple_repeat 1 49 0 1501 131 49 30 chr3 35685441 35685761 -182351397 - MER51A LTR ERV1 -83 551 149 286 346 62 0 chr3 35686335 35686465 -182350693 + L3b LINE CR1 1183 1320 -263 2269 114 0 7 chr3 35687300 35687599 -182349559 - AluSx SINE Alu -15 297 1 1400 268 89 4 chr3 35687945 35688396 -182348762 + LTR16C LTR ERVL 1 489 -2 246 32 0 0 chr3 35688992 35689023 -182348135 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 680 202 42 60 chr3 35689032 35689200 -182347958 - MIR SINE MIR -75 187 23 218 182 0 65 chr3 35689864 35689941 -182347217 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 345 24 0 0 chr3 35690476 35690518 -182346640 + (TG)n Simple_repeat Simple_repeat 2 43 0 416 240 107 7 chr3 35691034 35691184 -182345974 + LTR41 LTR ERVL 1 165 -608 263 302 19 0 chr3 35691676 35691782 -182345376 + LTR41 LTR ERVL 660 767 -6 448 230 85 71 chr3 35691957 35692240 -182344918 + MLT1H LTR MaLR 75 361 -188 273 184 0 16 chr3 35692297 35692368 -182344790 + MLT1G1 LTR MaLR 480 595 0 937 122 19 6 chr3 35693015 35693171 -182343987 - L1PA15 LINE L1 -21 6144 5987 1905 120 60 19 chr3 35693196 35693563 -182343595 - L1MA2 LINE L1 0 6304 5923 3584 160 14 32 chr3 35693590 35694309 -182342849 - L1 LINE L1 -1700 4446 3741 1351 166 18 5 chr3 35694309 35694560 -182342598 - AluJb SINE Alu 0 313 60 206 31 0 31 chr3 35694572 35694604 -182342554 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 790 180 0 34 chr3 35694604 35694782 -182342376 - L1 LINE L1 -2451 3695 3524 27 0 0 0 chr3 35695115 35695142 -182342016 + AT_rich Low_complexity Low_complexity 1 27 0 1111 121 131 15 chr3 35696208 35696414 -182340744 - MER30 DNA MER1_type 0 230 1 657 203 14 0 chr3 35696456 35696599 -182340559 + LTR16C LTR ERVL 345 489 -2 315 0 0 0 chr3 35697027 35697062 -182340096 + (CA)n Simple_repeat Simple_repeat 2 36 0 269 256 188 30 chr3 35697909 35698042 -182339116 - L2 LINE L2 0 3313 3160 2429 100 0 0 chr3 35699012 35699322 -182337836 - AluSg SINE Alu 0 310 1 227 354 26 0 chr3 35699652 35699764 -182337394 - MIR SINE MIR 0 262 148 479 260 6 89 chr3 35699764 35699890 -182337268 + MIR SINE MIR 3 113 -149 2392 73 0 25 chr3 35699890 35700204 -182336954 - AluY SINE Alu -5 306 1 479 260 6 89 chr3 35700204 35700246 -182336912 + MIR SINE MIR 113 157 -105 24 0 0 0 chr3 35700284 35700308 -182336850 + AT_rich Low_complexity Low_complexity 1 24 0 25208 39 0 1 chr3 35700335 35704221 -182332937 - L1PA4 LINE L1 -7 6148 2263 13750 64 16 0 chr3 35704221 35706062 -182331096 - L1PA4 LINE L1 -4276 1870 1 366 270 20 74 chr3 35706106 35706254 -182330904 - MIR SINE MIR -95 167 28 1152 241 26 0 chr3 35706271 35706615 -182330543 + L1M4 LINE L1 3502 3854 -2292 379 171 0 0 chr3 35706629 35706699 -182330459 + L1PA16 LINE L1 6079 6148 -18 1855 145 0 7 chr3 35706719 35707002 -182330156 + AluSq SINE Alu 1 281 -32 423 0 0 0 chr3 35707002 35707049 -182330109 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 850 235 67 24 chr3 35707054 35707352 -182329806 + L1M4 LINE L1 3836 4146 -2000 * 1160 225 50 59 chr3 35707348 35707689 -182329469 - L1ME LINE L1 -470 5696 5354 600 164 29 0 chr3 35707689 35707793 -182329365 - U6 snRNA snRNA 0 107 1 1160 225 50 59 chr3 35707793 35707912 -182329246 - L1ME LINE L1 -812 5354 5235 2513 56 7 3 chr3 35707912 35708214 -182328944 - AluY SINE Alu -8 303 1 1160 225 50 59 chr3 35708214 35708542 -182328616 - L1ME LINE L1 -931 5235 4901 480 273 68 0 chr3 35708551 35708712 -182328446 + L2 LINE L2 2258 2429 -885 709 197 64 32 chr3 35708736 35708954 -182328204 + LTR41 LTR ERVL 1 225 -548 289 246 29 0 chr3 35709314 35709383 -182327775 + LTR41 LTR ERVL 514 584 -189 432 129 24 35 chr3 35709453 35709538 -182327620 + Tigger1 DNA MER2_type 4 87 -2331 10351 129 21 10 chr3 35709652 35711369 -182325789 + Tigger1 DNA MER2_type 682 2418 0 392 188 13 84 chr3 35711369 35711519 -182325639 + LTR41 LTR ERVL 635 773 0 227 132 66 118 chr3 35711536 35711612 -182325546 + L2 LINE L2 2500 2571 -743 1800 236 17 61 chr3 35711614 35712206 -182324952 + MLT1F1 LTR MaLR 2 567 0 391 261 37 118 chr3 35712206 35712478 -182324680 + L2 LINE L2 2568 2817 -497 212 253 91 91 chr3 35712482 35712747 -182324411 + L2 LINE L2 3036 3300 -13 695 62 10 0 chr3 35712748 35712845 -182324313 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 263 399 54 0 chr3 35714297 35714445 -182322713 - L2 LINE L2 0 3272 3117 311 291 73 55 chr3 35714632 35714797 -182322361 - L2 LINE L2 -222 3050 2883 244 282 94 17 chr3 35715002 35715119 -182322039 + MIR SINE MIR 15 140 -122 231 218 0 0 chr3 35716257 35716312 -182320846 + (CA)n Simple_repeat Simple_repeat 1 55 0 222 214 0 0 chr3 35717755 35717797 -182319361 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 308 304 197 6 chr3 35717935 35718248 -182318910 - L2 LINE L2 -176 3096 2709 192 337 0 76 chr3 35718316 35718488 -182318670 + L2 LINE L2 2470 2628 -686 617 291 114 0 chr3 35718775 35719012 -182318146 + MLT1L LTR MaLR 352 615 0 252 303 43 25 chr3 35719138 35719300 -182317858 + L2 LINE L2 2829 2993 -279 491 193 0 46 chr3 35719418 35719527 -182317631 + MLT1I LTR MaLR 106 209 -200 605 217 101 48 chr3 35719615 35719804 -182317354 - MER58C DNA MER1_type -8 207 9 215 269 179 0 chr3 35720018 35720096 -182317062 + L2 LINE L2 3140 3231 -41 1204 54 7 0 chr3 35721520 35721667 -182315491 + AluSc SINE Alu 1 148 -161 198 0 0 0 chr3 35721730 35721752 -182315406 + (A)n Simple_repeat Simple_repeat 1 22 0 1082 102 7 0 chr3 35722460 35722607 -182314551 + AluSc SINE Alu 1 148 -161 216 0 0 0 chr3 35722668 35722692 -182314466 + (A)n Simple_repeat Simple_repeat 1 24 0 332 287 35 81 chr3 35722725 35722899 -182314259 + HAL1 LINE L1 103 268 -2239 419 301 111 18 chr3 35723078 35723410 -182313748 + HAL1 LINE L1 550 912 -1595 365 164 14 0 chr3 35723449 35723522 -182313636 + (TG)n Simple_repeat Simple_repeat 1 74 0 1436 272 134 34 chr3 35723602 35724754 -182312404 + HAL1 LINE L1 1013 2279 -228 408 176 39 17 chr3 35725092 35725332 -182311826 + (TA)n Simple_repeat Simple_repeat 1 245 0 25 0 0 0 chr3 35725401 35725426 -182311732 + AT_rich Low_complexity Low_complexity 1 25 0 380 194 10 19 chr3 35726009 35726112 -182311046 + Charlie7 DNA MER1_type 2511 2612 0 1065 172 0 20 chr3 35726613 35726676 -182310482 - MER3 DNA MER1_type -3 206 143 2018 132 3 3 chr3 35726676 35726971 -182310187 + AluSx SINE Alu 1 295 -17 1065 172 0 20 chr3 35726971 35727111 -182310047 - MER3 DNA MER1_type -66 143 7 195 125 0 0 chr3 35728092 35728132 -182309026 + (A)n Simple_repeat Simple_repeat 1 40 0 432 299 0 0 chr3 35728391 35728528 -182308630 - L1MC4a LINE L1 -1965 5843 5707 2413 81 0 3 chr3 35728649 35728958 -182308200 - AluY SINE Alu -3 308 1 1985 122 3 26 chr3 35728958 35729262 -182307896 - AluSx SINE Alu -15 297 1 189 0 0 0 chr3 35729709 35729730 -182307428 + (A)n Simple_repeat Simple_repeat 1 21 0 242 114 0 0 chr3 35732015 35732050 -182305108 + U2 snRNA snRNA 2 36 -152 1543 97 0 0 chr3 35732168 35732363 -182304795 - AluSx SINE Alu -117 195 1 556 118 88 0 chr3 35732705 35732807 -182304351 - L1MB1 LINE L1 -5 6163 6053 2441 73 0 3 chr3 35732973 35733273 -182303885 + AluY SINE Alu 1 299 -12 229 331 57 24 chr3 35733432 35733556 -182303602 - MIR SINE MIR -65 197 70 261 373 75 63 chr3 35733992 35734260 -182302898 - L2 LINE L2 0 3272 3002 344 306 124 61 chr3 35734287 35734731 -182302427 - L2 LINE L2 -378 2936 2465 296 127 0 18 chr3 35734800 35734855 -182302303 - MADE1 DNA Mariner 0 80 27 242 114 0 0 chr3 35735049 35735084 -182302074 - U2 snRNA snRNA -152 36 2 230 286 62 62 chr3 35737216 35737394 -182299764 + L2 LINE L2 2800 2977 -337 310 218 82 0 chr3 35737505 35737615 -182299543 - L1ME4a LINE L1 -6 6115 5997 440 300 41 70 chr3 35738394 35738637 -182298521 - MIR SINE MIR -13 249 14 346 284 0 0 chr3 35738810 35738912 -182298246 + (TA)n Simple_repeat Simple_repeat 1 102 0 371 260 40 10 chr3 35739688 35739788 -182297370 + L2 LINE L2 3168 3270 -2 353 255 159 13 chr3 35739798 35739955 -182297203 - MIR SINE MIR -51 211 32 526 289 33 38 chr3 35740105 35740291 -182296867 - MIR SINE MIR -42 220 28 2447 123 5 19 chr3 35740332 35740699 -182296459 + THE1B LTR MaLR 1 362 -2 11610 102 4 2 chr3 35740701 35742279 -182294879 + THE1B-int LTR MaLR 1 1580 0 2259 100 5 95 chr3 35742279 35742678 -182294480 + THE1B LTR MaLR 1 363 -1 426 216 21 89 chr3 35742696 35742886 -182294272 - L1ME3 LINE L1 -29 6133 5957 314 325 175 0 chr3 35743210 35743370 -182293788 - MER91A DNA MER1_type -8 188 1 308 262 244 0 chr3 35744045 35744274 -182292884 - L1ME3 LINE L1 -1000 5146 4862 393 311 57 45 chr3 35744359 35744536 -182292622 - HAL1b LINE L1 -1100 248 70 202 356 0 0 chr3 35746659 35746718 -182290440 - L2 LINE L2 -23 3249 3191 730 276 0 28 chr3 35747288 35747502 -182289656 - MER58A DNA MER1_type -16 208 1 1246 117 0 11 chr3 35747560 35747740 -182289418 + AluSg/x SINE Alu 133 310 -2 207 0 0 0 chr3 35747808 35747831 -182289327 + (TAA)n Simple_repeat Simple_repeat 2 24 0 282 325 123 31 chr3 35748038 35748395 -182288763 + L2 LINE L2 2140 2529 -785 381 234 161 8 chr3 35748853 35748977 -182288181 + MIR SINE MIR 115 257 -5 2264 107 16 47 chr3 35750186 35750571 -182286587 - THE1C LTR MaLR 0 375 3 223 222 0 0 chr3 35751883 35751928 -182285230 - MIR SINE MIR -17 245 201 239 263 0 0 chr3 35752381 35752457 -182284701 + MER113 DNA MER1_type? 2 77 -444 22 70 0 0 chr3 35753395 35753438 -182283720 + AT_rich Low_complexity Low_complexity 1 43 0 190 231 19 19 chr3 35753929 35753981 -182283177 - MIR SINE MIR -90 172 121 1501 136 0 42 chr3 35755245 35755481 -182281677 + AluSg/x SINE Alu 83 308 -2 743 174 0 0 chr3 35755700 35755815 -182281343 + FLAM_A SINE Alu 1 115 -18 2220 99 7 0 chr3 35755907 35756200 -182280958 - AluSq SINE Alu -18 295 1 373 253 0 22 chr3 35756800 35756891 -182280267 - MIR3 SINE MIR -10 198 110 431 250 181 0 chr3 35756971 35757115 -182280043 + MER5A DNA MER1_type 20 189 0 199 313 15 0 chr3 35757801 35757868 -182279290 - L2 LINE L2 -4 3268 3201 191 325 12 77 chr3 35757992 35758161 -182278997 - L2 LINE L2 -182 3090 2933 205 167 37 0 chr3 35758965 35759019 -182278139 + GA-rich Low_complexity Low_complexity 2 57 0 330 280 114 0 chr3 35759019 35759151 -182278007 + MER103 DNA DNA 1 147 -19 192 175 32 111 chr3 35759902 35759965 -182277193 + L2 LINE L2 2697 2754 -560 2304 53 0 3 chr3 35759973 35760292 -182276866 - AluY SINE Alu 0 318 1 189 353 32 39 chr3 35760414 35760570 -182276588 - L2 LINE L2 -833 2481 2327 762 105 21 35 chr3 35760577 35760720 -182276438 - Charlie1 DNA MER1_type -2 2759 2619 * 791 219 37 66 chr3 35760703 35760945 -182276213 - Charlie1 DNA MER1_type -2522 239 5 258 257 54 68 chr3 35761347 35761577 -182275581 - L1MEd LINE L1 -4862 1257 1111 378 283 0 8 chr3 35762614 35762734 -182274424 + MER94 DNA DNA 10 128 -6 507 192 192 6 chr3 35763417 35763569 -182273589 + MER5A DNA MER1_type 4 188 -1 1592 129 0 9 chr3 35763578 35763803 -182273355 + AluSx SINE Alu 1 223 -89 1561 245 78 41 chr3 35764658 35765213 -182271945 - MER119 DNA MER1_type -8 575 1 772 289 44 21 chr3 35765226 35765575 -182271583 - LTR16A1 LTR ERVL -2 455 127 210 191 24 24 chr3 35766540 35766582 -182270576 - MIR SINE MIR -138 70 29 1655 248 85 10 chr3 35766586 35767103 -182270055 + L2 LINE L2 2338 2893 -421 188 65 0 32 chr3 35767813 35767844 -182269314 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr3 35768708 35768729 -182268429 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 35768871 35768891 -182268267 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 186 133 0 0 chr3 35769120 35769150 -182268008 + (CATA)n Simple_repeat Simple_repeat 2 31 0 225 328 141 8 chr3 35769243 35769371 -182267787 - MIR3 SINE MIR -61 147 3 1068 282 102 21 chr3 35770383 35771031 -182266127 - L2 LINE L2 -16 3297 2572 258 200 0 18 chr3 35771061 35771116 -182266042 - L2 LINE L2 -937 2377 2324 2385 94 51 14 chr3 35771177 35771528 -182265630 + THE1B LTR MaLR 1 364 0 456 188 46 11 chr3 35772093 35772334 -182264824 + MER2 DNA MER2_type 2 345 0 354 240 74 25 chr3 35772689 35772810 -182264348 + L1ME4a LINE L1 5968 6094 -27 194 326 22 11 chr3 35772905 35772997 -182264161 - L2 LINE L2 -289 2983 2891 2350 103 0 7 chr3 35773143 35773453 -182263705 + AluSx SINE Alu 1 308 -4 566 248 89 32 chr3 35775373 35775744 -182261414 + L1M4 LINE L1 2955 3346 -2800 2211 99 7 0 chr3 35775744 35776038 -182261120 + AluSx SINE Alu 1 296 -16 311 307 100 32 chr3 35778427 35778766 -182258392 - MLT1J LTR MaLR -75 436 75 1064 186 201 21 chr3 35779016 35779393 -182257765 - MER31B LTR ERV1 -4 510 1 21 0 0 0 chr3 35779696 35779717 -182257441 + AT_rich Low_complexity Low_complexity 1 21 0 5715 243 78 20 chr3 35780488 35780683 -182256475 + L1MA4A LINE L1 119 301 -6548 2248 123 0 0 chr3 35780683 35780985 -182256173 + AluSq SINE Alu 1 302 -11 5715 243 78 20 chr3 35780985 35782476 -182254682 + L1MA4A LINE L1 301 1909 -4940 2249 110 0 3 chr3 35782476 35782776 -182254382 + AluSx SINE Alu 1 299 -13 5715 243 78 20 chr3 35782776 35782799 -182254359 + L1MA4A LINE L1 1909 1929 -4920 * 11733 174 32 33 chr3 35782777 35785364 -182251794 + L1MA4A LINE L1 3190 5775 -1073 6586 65 20 0 chr3 35785364 35786294 -182250864 - L1PA6 LINE L1 0 6154 5203 11733 174 32 33 chr3 35786294 35786553 -182250605 + L1MA4A LINE L1 5775 6033 -815 828 128 0 0 chr3 35786550 35786683 -182250475 - L1PA8 LINE L1 -938 5208 5076 * 6877 70 1 13 chr3 35786683 35786918 -182250240 + L1PA8 LINE L1 5206 5442 -730 2303 114 0 0 chr3 35786918 35787216 -182249942 + AluSg SINE Alu 1 298 -12 6877 70 1 13 chr3 35787216 35787953 -182249205 + L1PA8 LINE L1 5442 6168 -4 3960 140 17 3 chr3 35787954 35788647 -182248511 + L1MA4A LINE L1 6022 6724 -281 22 0 0 0 chr3 35792448 35792470 -182244688 + AT_rich Low_complexity Low_complexity 1 22 0 490 261 36 12 chr3 35793498 35793663 -182243495 + L2 LINE L2 3096 3264 -49 303 306 0 0 chr3 35793665 35793750 -182243408 - MER5B DNA MER1_type -93 85 1 2303 84 44 0 chr3 35794338 35794635 -182242523 + AluSp SINE Alu 1 310 -3 751 269 57 0 chr3 35794884 35795077 -182242081 + MIR SINE MIR 9 212 -50 282 259 49 12 chr3 35795062 35795143 -182242015 - MIR SINE MIR -13 249 166 * 182 413 130 0 chr3 35795737 35795967 -182241191 + L2 LINE L2 3030 3289 -24 368 339 24 8 chr3 35796053 35796177 -182240981 - L2 LINE L2 0 3313 3188 550 291 195 5 chr3 35798474 35798684 -182238474 + MIR SINE MIR 13 262 0 286 258 0 45 chr3 35798828 35798894 -182238264 + MIR SINE MIR 20 82 -180 201 125 50 0 chr3 35800813 35800853 -182236305 - L2 LINE L2 -2 3311 3270 1513 268 153 52 chr3 35802275 35803003 -182234155 + L2 LINE L2 2090 2962 -351 1086 218 20 96 chr3 35803003 35803335 -182233823 + MLT1A1 LTR MaLR 1 300 -65 1508 216 7 10 chr3 35803335 35803626 -182233532 + AluJo SINE Alu 2 291 -21 1086 218 20 96 chr3 35803626 35803687 -182233471 + MLT1A1 LTR MaLR 300 364 -1 1513 268 153 52 chr3 35803687 35804038 -182233120 + L2 LINE L2 2962 3276 -37 321 164 194 0 chr3 35804594 35804661 -182232497 - MER5C DNA MER1_type -2 322 243 383 202 18 79 chr3 35804720 35804834 -182232324 - MER5C DNA MER1_type -200 124 18 2212 112 10 3 chr3 35806027 35806323 -182230835 + AluSx SINE Alu 1 298 -14 645 174 14 7 chr3 35806769 35806907 -182230251 + L1MD3 LINE L1 7840 7978 -17 266 231 103 13 chr3 35807544 35807622 -182229536 - MIR3 SINE MIR -43 165 81 196 280 0 20 chr3 35808105 35808155 -182229003 - L2 LINE L2 -15 3257 3209 351 173 160 0 chr3 35808659 35808734 -182228424 - L2 LINE L2 0 3313 3227 5499 121 4 4 chr3 35810274 35811658 -182225500 - L1P4 LINE L1 -352 5822 4441 235 293 38 38 chr3 35811801 35811907 -182225251 - MIR SINE MIR 0 262 157 198 294 0 0 chr3 35812444 35812495 -182224663 + MIR SINE MIR 211 261 -1 180 111 0 0 chr3 35812534 35812561 -182224597 + (TAG)n Simple_repeat Simple_repeat 3 29 0 300 96 19 19 chr3 35812749 35812801 -182224357 - MIR SINE MIR -121 141 90 613 308 13 36 chr3 35813542 35813766 -182223392 + MIR SINE MIR 18 236 -26 2097 119 0 35 chr3 35815338 35815648 -182221510 + AluSg SINE Alu 1 299 -11 1950 223 85 31 chr3 35815686 35816237 -182220921 + MLT1E LTR MaLR 2 582 -11 197 204 82 0 chr3 35816253 35816302 -182220856 - L2 LINE L2 -1 3271 3219 1824 143 11 0 chr3 35816940 35817213 -182219945 - AluSx SINE Alu -30 282 7 1548 105 5 5 chr3 35817397 35817606 -182219552 + AluSx SINE Alu 1 209 -103 662 211 88 14 chr3 35817603 35817750 -182219408 + AluJo/FRAM SINE Alu 145 302 -10 2955 236 53 30 chr3 35817889 35818731 -182218427 + L1ME2 LINE L1 5293 6154 -10 2570 216 104 64 chr3 35818746 35819771 -182217387 + L1MC5 LINE L1 6607 7678 -283 490 228 26 47 chr3 35819797 35819990 -182217168 + L1MC5 LINE L1 7756 7944 -17 2375 36 39 42 chr3 35820081 35820389 -182216769 - AluY SINE Alu -4 307 1 791 203 58 76 chr3 35821575 35821697 -182215461 + ORSL DNA AcHobo 1 124 -151 2421 74 0 0 chr3 35821697 35821995 -182215163 + AluY SINE Alu 1 298 -13 186 43 0 0 chr3 35821995 35822018 -182215140 + (TA)n Simple_repeat Simple_repeat 1 23 0 791 203 58 76 chr3 35822018 35822170 -182214988 + ORSL DNA AcHobo 122 271 -4 28 48 0 0 chr3 35822616 35822658 -182214500 + GC_rich Low_complexity Low_complexity 1 42 0 326 119 48 0 chr3 35822730 35822814 -182214344 + (CCG)n Simple_repeat Simple_repeat 3 90 0 587 149 43 0 chr3 35824285 35824379 -182212779 + AluS SINE Alu 2 99 -213 1651 113 34 8 chr3 35824379 35824618 -182212540 + AluSx SINE Alu 54 298 -14 1077 90 8 0 chr3 35825716 35825850 -182211308 + AluY SINE Alu 1 135 -176 202 180 60 20 chr3 35825851 35825951 -182211207 + A-rich Low_complexity Low_complexity 1 104 0 557 163 96 22 chr3 35827266 35827331 -182209827 - MER69 DNA AcHobo 0 2526 2467 2123 120 3 22 chr3 35827331 35827673 -182209485 + AluSx SINE Alu 1 312 0 557 163 96 22 chr3 35827673 35827742 -182209416 - MER69 DNA AcHobo -59 2467 2382 313 217 0 0 chr3 35827895 35827955 -182209203 - MER69 DNA AcHobo -2465 61 2 1875 151 10 10 chr3 35828226 35828518 -182208640 + AluSx SINE Alu 1 292 -20 254 273 0 0 chr3 35828546 35828612 -182208546 - L1ME1 LINE L1 -50 6116 6051 22 0 0 0 chr3 35828657 35828679 -182208479 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 35828886 35828923 -182208235 + (TG)n Simple_repeat Simple_repeat 2 38 0 2307 123 27 6 chr3 35828945 35829311 -182207847 + THE1C LTR MaLR 2 375 0 809 301 15 4 chr3 35829791 35830050 -182207108 + MIR SINE MIR 1 262 0 2253 102 3 10 chr3 35830524 35830828 -182206330 + AluSx SINE Alu 1 302 -10 1133 136 27 0 chr3 35831512 35831696 -182205462 - MER57B LTR ERV1 0 434 246 2184 120 3 0 chr3 35832066 35832374 -182204784 + AluSx SINE Alu 1 309 -3 1841 153 27 17 chr3 35832587 35832882 -182204276 + AluJo SINE Alu 2 299 -13 25 65 0 0 chr3 35832927 35832973 -182204185 + AT_rich Low_complexity Low_complexity 1 46 0 2379 89 0 10 chr3 35833032 35833346 -182203812 + AluSx SINE Alu 1 311 -1 359 327 20 20 chr3 35834381 35834531 -182202627 - L2 LINE L2 0 3272 3123 621 251 112 18 chr3 35834793 35835016 -182202142 - MIR SINE MIR -3 259 16 244 255 0 0 chr3 35835359 35835410 -182201748 + L2 LINE L2 3219 3269 -3 454 273 70 0 chr3 35835419 35835547 -182201611 - LTR16C LTR ERVL 0 491 355 1709 182 20 0 chr3 35835547 35835844 -182201314 + AluJb SINE Alu 1 303 -9 599 259 184 9 chr3 35835847 35836075 -182201083 - MER57B LTR ERV1 -165 269 2 241 246 0 31 chr3 35836261 35836326 -182200832 + GA-rich Low_complexity Low_complexity 3 65 0 2313 76 31 0 chr3 35837212 35837503 -182199655 + AluY SINE Alu 1 300 -11 426 306 126 10 chr3 35838185 35838208 -182198950 + MIR SINE MIR 1 20 -242 1807 172 47 0 chr3 35838208 35838504 -182198654 + AluJo SINE Alu 1 310 -2 426 306 126 10 chr3 35838504 35838679 -182198479 + MIR SINE MIR 20 222 -40 653 206 22 15 chr3 35839202 35839338 -182197820 - FLAM_A SINE Alu 0 142 6 355 217 9 85 chr3 35839357 35839463 -182197695 - L1ME LINE L1 -443 5719 5622 256 310 0 0 chr3 35839512 35839583 -182197575 + L2 LINE L2 3188 3258 -55 1793 189 46 9 chr3 35839584 35839933 -182197225 - MLT1A2 LTR MaLR -7 367 6 * 2324 180 27 56 chr3 35839930 35840414 -182196744 + MER82 DNA MER2_type 162 631 -22 262 274 0 0 chr3 35840615 35840677 -182196481 + L2 LINE L2 3201 3262 -10 291 273 68 15 chr3 35841765 35841897 -182195261 + L1ME4a LINE L1 5966 6104 -17 2137 208 223 52 chr3 35842028 35842812 -182194346 + L1MC3 LINE L1 6176 7093 -692 409 245 0 32 chr3 35842812 35842906 -182194252 + MLT1F1 LTR MaLR 35 125 -442 383 220 44 11 chr3 35842936 35843027 -182194131 - MER5A DNA MER1_type -95 94 1 381 216 6 16 chr3 35843293 35843386 -182193772 - MER5A DNA MER1_type 0 189 86 966 208 47 24 chr3 35843389 35843644 -182193514 - MIR SINE MIR 0 262 2 828 285 162 15 chr3 35843666 35844006 -182193152 - LTR16C LTR ERVL -3 488 99 1686 179 0 38 chr3 35844102 35844415 -182192743 - AluJo SINE Alu -11 301 1 1142 181 177 12 chr3 35844545 35844794 -182192364 + AluSc SINE Alu 1 290 -9 2311 111 0 0 chr3 35844865 35845162 -182191996 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr3 35846100 35846139 -182191019 + AT_rich Low_complexity Low_complexity 1 39 0 1709 168 45 0 chr3 35846144 35846430 -182190728 + AluJo SINE Alu 3 301 -11 21 36 0 0 chr3 35846658 35846686 -182190472 + AT_rich Low_complexity Low_complexity 1 28 0 262 247 12 12 chr3 35846826 35846907 -182190251 + L2 LINE L2 3198 3278 -35 21 36 0 0 chr3 35848531 35848559 -182188599 + AT_rich Low_complexity Low_complexity 1 28 0 1283 187 0 123 chr3 35849206 35849342 -182187816 + AluSx SINE Alu 3 73 -239 1687 127 4 4 chr3 35849342 35849579 -182187579 + AluSg SINE Alu 61 297 -13 1283 187 0 123 chr3 35849579 35849784 -182187374 + AluSx SINE Alu 73 302 -10 1578 152 3 87 chr3 35850244 35850580 -182186578 - AluJo SINE Alu 0 310 1 559 226 91 178 chr3 35851096 35851261 -182185897 - Charlie8 DNA MER1_type -1892 525 347 2115 136 13 3 chr3 35851261 35851563 -182185595 - AluSx SINE Alu -7 305 1 559 226 91 178 chr3 35851563 35851969 -182185189 - Charlie8 DNA MER1_type -2070 347 4 1288 187 11 41 chr3 35852946 35853214 -182183944 - AluJb SINE Alu -52 260 1 2096 121 0 3 chr3 35853223 35853534 -182183624 - AluSx SINE Alu 0 310 1 560 225 33 7 chr3 35853538 35853689 -182183469 + L1M4 LINE L1 4849 5003 -1143 1260 111 82 19 chr3 35853690 35853898 -182183260 + AluSq SINE Alu 85 305 -8 1942 160 0 10 chr3 35854035 35854341 -182182817 - AluSx SINE Alu -9 303 1 881 139 13 6 chr3 35854344 35854502 -182182656 - L1MA5 LINE L1 0 6300 6142 1387 151 37 4 chr3 35854566 35854840 -182182318 - L1MA5 LINE L1 -23 6145 5875 202 336 16 8 chr3 35854905 35855033 -182182125 + GA-rich Low_complexity Low_complexity 1 129 0 2152 131 0 16 chr3 35857105 35857417 -182179741 + AluSq SINE Alu 1 307 -6 2353 104 7 0 chr3 35857418 35857726 -182179432 + AluSq SINE Alu 1 310 -3 384 247 31 12 chr3 35857828 35857990 -182179168 + (TA)n Simple_repeat Simple_repeat 1 165 0 2089 113 51 0 chr3 35858315 35858608 -182178550 - AluSg SINE Alu -2 308 1 607 200 0 0 chr3 35858752 35858852 -182178306 - AluJ/FLAM SINE Alu -211 101 2 261 314 14 0 chr3 35858884 35858954 -182178204 + MLT1J LTR MaLR 110 180 -331 * 284 242 32 0 chr3 35858924 35858986 -182178172 + MLT1L LTR MaLR 215 278 -337 231 265 29 0 chr3 35859357 35859425 -182177733 + GA-rich Low_complexity Low_complexity 3 72 0 4039 140 13 13 chr3 35859496 35859680 -182177478 - MER41B LTR ERV1 0 635 452 2122 110 7 26 chr3 35859680 35859989 -182177169 - AluSx SINE Alu -9 303 1 4039 140 13 13 chr3 35859989 35860439 -182176719 - MER41B LTR ERV1 -182 453 1 2002 160 0 3 chr3 35860644 35860957 -182176201 + AluJb SINE Alu 1 312 0 248 212 52 40 chr3 35861261 35861384 -182175774 + LTR16C LTR ERVL 333 490 -1 1316 184 98 133 chr3 35862634 35862714 -182174444 - L1ME2 LINE L1 -9 6155 6074 2128 120 0 22 chr3 35862714 35863031 -182174127 + AluSx SINE Alu 1 310 -2 1316 184 98 133 chr3 35863031 35863257 -182173901 - L1ME2 LINE L1 -90 6074 5872 2154 125 0 0 chr3 35863257 35863546 -182173612 - AluSg SINE Alu -21 289 1 1316 184 98 133 chr3 35863546 35863766 -182173392 - L1ME2 LINE L1 -292 5872 5646 1380 168 111 68 chr3 35863790 35864214 -182172944 + LTR7 LTR ERV1 1 442 -8 2296 166 60 56 chr3 35864222 35865083 -182172075 + HERVH LTR ERV1 1 1182 -6531 1466 157 4 25 chr3 35865081 35865355 -182171803 + HERVH LTR ERV1 2728 2995 -4718 * 3570 142 9 8 chr3 35865334 35866581 -182170577 + HERVH LTR ERV1 3140 5286 -1805 1628 153 10 37 chr3 35866884 35867178 -182169980 - AluJb SINE Alu -18 294 9 248 205 0 58 chr3 35867554 35867779 -182169379 + AluJo SINE Alu 2 291 -11 436 225 62 62 chr3 35868517 35868695 -182168463 + MIR SINE MIR 32 209 -53 2063 130 0 3 chr3 35868884 35869168 -182167990 + AluSx SINE Alu 1 283 -29 1946 124 13 23 chr3 35869212 35869511 -182167647 + AluSx SINE Alu 1 296 -16 1249 73 11 0 chr3 35869631 35869809 -182167349 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 837 141 0 37 chr3 35869827 35869962 -182167196 + AluSq/x SINE Alu 2 131 -182 949 104 0 0 chr3 35869968 35870102 -182167056 - AluSg/x SINE Alu -2 310 177 554 178 28 188 chr3 35870113 35870326 -182166832 - MER74A LTR ERVL -350 208 30 2036 165 8 61 chr3 35870372 35870767 -182166391 - MLT1B LTR MaLR 0 390 17 1932 112 76 0 chr3 35870802 35871079 -182166079 + AluSp SINE Alu 1 298 -15 2060 122 14 0 chr3 35871246 35871554 -182165604 + AluSx SINE Alu 1 312 0 330 87 0 0 chr3 35871870 35871916 -182165242 + (CA)n Simple_repeat Simple_repeat 2 47 0 2158 110 17 3 chr3 35872218 35872509 -182164649 - AluSq SINE Alu -18 295 1 277 269 25 42 chr3 35872583 35872702 -182164456 - LTR67 LTR ERVL 0 557 441 1869 140 63 3 chr3 35873345 35873631 -182163527 - AluJb SINE Alu -9 303 1 1751 141 8 4 chr3 35873642 35873904 -182163254 - AluSx SINE Alu -17 295 33 449 129 0 0 chr3 35873904 35873966 -182163192 - AluS SINE Alu -246 67 6 423 248 35 35 chr3 35873982 35874095 -182163063 + MLT1J2 LTR MaLR 87 199 -251 2318 112 0 3 chr3 35874097 35874410 -182162748 - AluSx SINE Alu 0 312 1 1240 124 0 0 chr3 35874420 35874597 -182162561 - AluSq SINE Alu 0 313 137 2287 111 3 0 chr3 35874617 35874914 -182162244 - AluSq SINE Alu -15 298 1 367 360 37 0 chr3 35875071 35875207 -182161951 + MIR3 SINE MIR 14 154 -54 243 227 91 0 chr3 35875972 35876038 -182161120 - L2 LINE L2 -1 3312 3241 1182 122 6 0 chr3 35876085 35876249 -182160909 - AluSg/x SINE Alu -9 301 137 265 162 14 14 chr3 35878064 35878138 -182159020 + CT-rich Low_complexity Low_complexity 3 76 0 2276 105 3 7 chr3 35878214 35878509 -182158649 + AluSx SINE Alu 1 294 -18 1355 215 33 10 chr3 35878628 35878930 -182158228 + AluJo SINE Alu 3 311 -1 2310 98 0 19 chr3 35878930 35879245 -182157913 + AluY SINE Alu 1 309 -2 2275 67 44 10 chr3 35879325 35879622 -182157536 + AluY SINE Alu 1 307 -4 1074 168 31 75 chr3 35880706 35880838 -182156320 + MER20 DNA MER1_type 1 120 -99 1520 232 118 47 chr3 35880838 35881261 -182155897 - LTR27 LTR ERV1 -1 635 157 2008 152 7 0 chr3 35881261 35881557 -182155601 + AluSp SINE Alu 1 298 -15 1520 232 118 47 chr3 35881557 35881724 -182155434 - LTR27 LTR ERV1 -479 157 3 1074 168 31 75 chr3 35881724 35881817 -182155341 + MER20 DNA MER1_type 120 216 -3 341 300 30 0 chr3 35882597 35882697 -182154461 + MIR SINE MIR 4 106 -156 23 0 0 0 chr3 35882697 35882720 -182154438 + AT_rich Low_complexity Low_complexity 1 23 0 1137 142 0 0 chr3 35882721 35882883 -182154275 - AluSg/x SINE Alu -22 290 129 184 98 244 0 chr3 35882887 35882928 -182154230 + MIR SINE MIR 93 143 -119 783 170 7 15 chr3 35882935 35883070 -182154088 - AluJo SINE Alu -177 135 2 337 214 36 12 chr3 35883442 35883526 -182153632 + LTR16A1 LTR ERVL 346 431 -26 347 224 0 0 chr3 35883526 35883593 -182153565 + MIR SINE MIR 186 252 -10 2105 114 3 7 chr3 35884085 35884374 -182152784 + AluSx SINE Alu 1 288 -24 183 344 0 16 chr3 35884595 35884656 -182152502 + L2 LINE L2 3127 3186 -86 705 175 0 8 chr3 35884961 35885081 -182152077 + FLAM_A SINE Alu 16 134 -8 226 291 116 0 chr3 35885261 35885347 -182151811 + MIR3 SINE MIR 65 160 -48 905 230 10 0 chr3 35885352 35885552 -182151606 - MER3 DNA MER1_type -5 204 3 2180 100 7 23 chr3 35885654 35885955 -182151203 + AluSx SINE Alu 1 296 -16 2209 116 39 0 chr3 35886326 35886662 -182150496 - L1PA11 LINE L1 -4 6170 5822 438 206 40 29 chr3 35886783 35886958 -182150200 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 2075 111 36 16 chr3 35887085 35887391 -182149767 - AluSx SINE Alu 0 312 1 329 158 40 13 chr3 35887786 35887862 -182149296 - L1MC4 LINE L1 0 8042 7965 1863 185 25 11 chr3 35887863 35888219 -182148939 + MLT1A2 LTR MaLR 1 361 -13 621 123 0 290 chr3 35888223 35888419 -182148739 - L1MC4 LINE L1 -75 7967 7716 1832 72 5 0 chr3 35888419 35888641 -182148517 + AluSp SINE Alu 1 223 -90 260 111 0 0 chr3 35888641 35888686 -182148472 + AluSp SINE Alu 257 301 -2 621 123 0 290 chr3 35888686 35888700 -182148458 - L1MC4 LINE L1 -325 7717 7864 2344 96 0 0 chr3 35888700 35888993 -182148165 + AluSg1 SINE Alu 1 293 -16 621 123 0 290 chr3 35888993 35889133 -182148025 - L1MC4 LINE L1 -177 7865 7686 401 328 8 8 chr3 35889148 35889282 -182147876 + MIR SINE MIR 126 259 -3 724 218 163 44 chr3 35889927 35890246 -182146912 + MLT1J1 LTR MaLR 104 433 -13 231 253 40 27 chr3 35890282 35890357 -182146801 + MIR SINE MIR 37 112 -96 1711 180 7 7 chr3 35890658 35890963 -182146195 - AluJo SINE Alu -7 305 1 1661 166 254 56 chr3 35891002 35891521 -182145637 - LTR29 LTR ERV1 0 622 1 1712 143 51 11 chr3 35891564 35891861 -182145297 + AluJb SINE Alu 1 308 0 2080 136 3 0 chr3 35891974 35892260 -182144898 - AluSg SINE Alu -23 287 1 187 310 46 23 chr3 35892986 35893073 -182144085 + MIR3 SINE MIR 98 186 -22 214 328 171 26 chr3 35893246 35893627 -182143531 - L2 LINE L2 -468 2846 2411 519 214 0 10 chr3 35893665 35893763 -182143395 + AluSp SINE Alu 113 209 -104 1290 181 107 65 chr3 35893763 35894195 -182142963 + LTR7 LTR ERV1 1 450 0 2716 136 11 24 chr3 35894195 35894660 -182142498 + HERVH LTR ERV1 1 459 -7254 292 221 91 28 chr3 35894642 35894844 -182142314 + HERVH LTR ERV1 346 620 -7093 * 10527 103 9 32 chr3 35894831 35896430 -182140728 + HERVH LTR ERV1 756 2317 -5396 2286 114 3 0 chr3 35896655 35896963 -182140195 - AluSc SINE Alu 0 309 1 1563 180 7 20 chr3 35897529 35897824 -182139334 - AluJo SINE Alu -21 291 1 2191 112 0 3 chr3 35897927 35898223 -182138935 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 35898582 35898605 -182138553 + (GA)n Simple_repeat Simple_repeat 2 24 0 367 219 104 0 chr3 35898747 35898843 -182138315 + MER53 DNA DNA 2 107 -82 227 354 107 41 chr3 35898898 35899475 -182137683 - L2 LINE L2 -2 3270 2656 310 104 0 0 chr3 35899582 35899630 -182137528 - Alu SINE Alu -17 285 238 525 146 146 0 chr3 35899632 35899721 -182137437 + AluJo SINE Alu 72 173 -139 * 595 50 25 12 chr3 35899718 35899798 -182137360 + AluSg/x SINE Alu 219 299 -11 2252 118 0 3 chr3 35899801 35900097 -182137061 + AluSq SINE Alu 1 295 -18 21 36 0 0 chr3 35900482 35900510 -182136648 + AT_rich Low_complexity Low_complexity 1 28 0 502 154 13 0 chr3 35900517 35900595 -182136563 + MER51A LTR ERV1 469 547 -87 432 278 120 0 chr3 35900606 35900714 -182136444 - AluSq/x SINE Alu -181 121 1 1540 165 0 0 chr3 35900739 35900969 -182136189 + AluJb SINE Alu 1 230 -82 189 107 0 0 chr3 35900985 35901013 -182136145 + (A)n Simple_repeat Simple_repeat 1 28 0 400 243 98 35 chr3 35901021 35901194 -182135964 - MIR SINE MIR -32 230 47 785 71 0 0 chr3 35901486 35901584 -182135574 - HY3 scRNA scRNA -2 99 2 448 363 50 40 chr3 35901649 35901993 -182135165 + L3 LINE CR1 265 615 -962 1834 172 0 13 chr3 35901993 35902295 -182134863 - AluJb SINE Alu -11 301 4 448 363 50 40 chr3 35902295 35902349 -182134809 + L3 LINE CR1 615 667 -910 368 275 63 7 chr3 35902363 35902505 -182134653 + L2 LINE L2 2267 2416 -898 350 301 63 121 chr3 35902514 35902943 -182134215 - MLT1K LTR MaLR -5 583 180 1347 160 44 0 chr3 35903072 35903297 -182133861 - AluJo SINE Alu -8 304 70 910 201 115 63 chr3 35903297 35903680 -182133478 - LTR7 LTR ERV1 0 450 48 5879 131 36 32 chr3 35903816 35905191 -182131967 - L1MA4 LINE L1 -2 6298 4900 226 262 16 0 chr3 35905271 35905332 -182131826 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 311 0 0 25 chr3 35906123 35906163 -182130995 + (TG)n Simple_repeat Simple_repeat 2 40 0 407 258 10 93 chr3 35906618 35906812 -182130346 - MER5B DNA MER1_type 0 178 1 884 203 7 0 chr3 35906822 35906975 -182130183 + FRAM SINE Alu 4 157 -19 2406 87 7 0 chr3 35907541 35907851 -182129307 - AluSp SINE Alu -1 312 1 2287 123 0 0 chr3 35908980 35909290 -182127868 + AluSx SINE Alu 1 310 -2 245 339 46 23 chr3 35910042 35910216 -182126942 - MIR3 SINE MIR -1 207 30 306 254 51 43 chr3 35910284 35910422 -182126736 + L2 LINE L2 2934 3072 -200 1951 77 168 34 chr3 35910984 35911297 -182125861 - MER39B LTR ERV1 -244 409 43 222 37 0 0 chr3 35911297 35911324 -182125834 + (GA)n Simple_repeat Simple_repeat 1 27 0 1951 77 168 34 chr3 35911324 35911361 -182125797 - MER39B LTR ERV1 -610 43 12 218 200 40 0 chr3 35911727 35911777 -182125381 + T-rich Low_complexity Low_complexity 5 56 0 1965 116 3 21 chr3 35911796 35912081 -182125077 - AluSx SINE Alu -32 280 1 1372 140 8 29 chr3 35912082 35912325 -182124833 + MER39B LTR ERV1 413 650 -3 2298 96 0 23 chr3 35912383 35912684 -182124474 + AluSg SINE Alu 1 294 -16 2095 123 7 3 chr3 35912709 35913018 -182124140 + AluSg SINE Alu 1 310 0 238 262 74 66 chr3 35913035 35913157 -182124001 - MLT1L LTR MaLR -348 267 145 435 242 128 40 chr3 35913377 35913526 -182123632 - MIR SINE MIR -54 208 47 180 286 0 48 chr3 35913625 35913688 -182123470 - L2 LINE L2 -4 3268 3209 247 300 0 0 chr3 35914064 35914134 -182123024 - MER117 DNA MER1_type -50 147 78 1676 151 88 18 chr3 35914194 35914376 -182122782 + AluJb SINE Alu 1 169 -143 2633 187 57 88 chr3 35914376 35914555 -182122603 - LTR8A LTR ERV1 0 727 544 1790 105 93 0 chr3 35914555 35914851 -182122307 - AluSg SINE Alu 0 320 1 2633 187 57 88 chr3 35914851 35914880 -182122278 - LTR8A LTR ERV1 -183 544 516 2236 110 3 0 chr3 35914880 35915172 -182121986 - AluSq SINE Alu -20 293 1 2633 187 57 88 chr3 35915172 35915711 -182121447 - LTR8A LTR ERV1 -211 516 1 1676 151 88 18 chr3 35915711 35915813 -182121345 + AluJb SINE Alu 169 305 -7 526 336 40 5 chr3 35915894 35916117 -182121041 - MIR SINE MIR -31 231 1 751 122 9 0 chr3 35916519 35916626 -182120532 - AluSg/x SINE Alu -11 298 191 2345 112 0 0 chr3 35916822 35917126 -182120032 - AluSg1 SINE Alu -5 304 1 905 211 26 5 chr3 35917172 35917362 -182119796 + L1ME LINE L1 5464 5657 -507 1808 161 3 14 chr3 35917362 35917648 -182119510 + AluJo SINE Alu 1 283 -29 1321 162 92 123 chr3 35917649 35918105 -182119053 - LTR7 LTR ERV1 -8 442 1 3078 81 7 11 chr3 35918105 35918538 -182118620 - HERVH LTR ERV1 0 7713 7283 3468 132 0 8 chr3 35918541 35919034 -182118124 - HERVH LTR ERV1 -2697 5016 4528 302 289 54 66 chr3 35919163 35919329 -182117829 - L3 LINE CR1 -267 1310 1147 230 285 198 11 chr3 35919852 35919981 -182117177 - MIR SINE MIR -60 148 33 786 290 125 37 chr3 35919987 35920200 -182116958 + MLT1K LTR MaLR 10 203 -385 180 0 0 0 chr3 35920200 35920220 -182116938 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 786 290 125 37 chr3 35920220 35920231 -182116927 + MLT1K LTR MaLR 203 212 -376 2053 124 28 0 chr3 35920231 35920513 -182116645 - AluSg SINE Alu -20 290 1 786 290 125 37 chr3 35920513 35920752 -182116406 + MLT1K LTR MaLR 212 515 -73 231 288 27 0 chr3 35920764 35920837 -182116321 + CT-rich Low_complexity Low_complexity 5 79 0 2275 176 24 12 chr3 35921020 35921441 -182115717 + MSTB LTR MaLR 1 426 0 2203 113 3 0 chr3 35921493 35921786 -182115372 - AluSg SINE Alu -16 294 1 471 271 16 39 chr3 35921795 35921924 -182115234 - MIR SINE MIR -67 141 16 333 329 63 14 chr3 35921934 35922077 -182115081 + MIR3 SINE MIR 43 192 -16 183 129 0 0 chr3 35922169 35922200 -182114958 + (CA)n Simple_repeat Simple_repeat 1 31 0 2202 119 0 10 chr3 35922642 35922945 -182114213 - AluSg1 SINE Alu -8 301 2 28 29 0 0 chr3 35922945 35922980 -182114178 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr3 35923003 35923024 -182114134 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1914 160 0 0 chr3 35923027 35923314 -182113844 - AluSx SINE Alu -25 287 1 1460 204 83 39 chr3 35923512 35923923 -182113235 - MER21A LTR ERV1 0 931 503 1140 181 18 9 chr3 35923996 35924217 -182112941 - MER21B LTR ERV1 -638 225 3 23 68 0 0 chr3 35924613 35924657 -182112501 + AT_rich Low_complexity Low_complexity 1 44 0 1588 101 18 0 chr3 35924695 35924914 -182112244 - AluSg1 SINE Alu -86 223 1 851 204 81 50 chr3 35924950 35925015 -182112143 - MSTD LTR MaLR -7 389 327 2250 107 3 13 chr3 35925015 35925313 -182111845 + AluSx SINE Alu 1 295 -17 851 204 81 50 chr3 35925313 35925507 -182111651 - MSTD LTR MaLR -69 327 122 844 158 0 0 chr3 35925507 35925634 -182111524 + FLAM_C SINE Alu 1 127 -16 39 60 0 0 chr3 35925636 35925703 -182111455 + AT_rich Low_complexity Low_complexity 1 67 0 1474 193 0 63 chr3 35925704 35926035 -182111123 + AluJo SINE Alu 1 312 0 601 130 20 0 chr3 35926041 35926141 -182111017 - MSTD LTR MaLR -294 102 1 2262 128 0 3 chr3 35927002 35927315 -182109843 + AluSx SINE Alu 1 312 0 29 47 0 0 chr3 35927435 35927478 -182109680 + AT_rich Low_complexity Low_complexity 1 43 0 2748 144 45 19 chr3 35927478 35927914 -182109244 + L1MC2 LINE L1 5818 6270 -74 2335 98 0 10 chr3 35927914 35928220 -182108938 - AluSx SINE Alu -9 303 1 2748 144 45 19 chr3 35928220 35928295 -182108863 + L1MC2 LINE L1 6270 6342 -2 1926 115 0 77 chr3 35928615 35928927 -182108231 - AluSx SINE Alu -24 288 1 2380 102 0 3 chr3 35928953 35929266 -182107892 - AluSq SINE Alu -1 312 1 22 0 0 0 chr3 35929790 35929812 -182107346 + AT_rich Low_complexity Low_complexity 1 22 0 1650 183 74 0 chr3 35929812 35930097 -182107061 - AluJb SINE Alu -6 306 1 652 219 8 0 chr3 35930162 35930285 -182106873 - FLAM_C SINE Alu -19 124 1 402 223 45 0 chr3 35930292 35930404 -182106754 - L1M4 LINE L1 -3476 4089 3973 738 156 33 0 chr3 35930406 35930528 -182106630 + AluJo/FLAM SINE Alu 2 127 -175 2011 121 11 4 chr3 35930531 35930852 -182106306 + AluSq SINE Alu 1 323 0 1102 118 7 0 chr3 35930856 35931008 -182106150 + AluSq SINE Alu 1 153 -160 24 0 0 0 chr3 35931022 35931046 -182106112 + AT_rich Low_complexity Low_complexity 1 24 0 586 229 30 3 chr3 35931046 35931246 -182105912 - L1M4 LINE L1 -3945 3620 3419 828 178 0 0 chr3 35931403 35931532 -182105626 + FLAM_C SINE Alu 2 130 -3 2311 107 3 0 chr3 35931537 35931845 -182105313 + AluSp SINE Alu 1 309 -4 2205 142 3 0 chr3 35931961 35932270 -182104888 + AluSq SINE Alu 1 310 -3 2225 78 3 20 chr3 35932271 35932566 -182104592 + AluSp SINE Alu 1 290 -23 1140 309 109 5 chr3 35932566 35933171 -182103987 - L2 LINE L2 -25 3288 2627 1910 250 45 24 chr3 35933201 35933733 -182103425 + MLT1E LTR MaLR 51 593 0 760 253 39 0 chr3 35933733 35933915 -182103243 - L2 LINE L2 -678 2636 2448 2220 106 3 0 chr3 35933990 35934283 -182102875 + AluSp SINE Alu 1 294 -19 226 150 50 50 chr3 35934531 35934591 -182102567 + LTR32 LTR ERVL 320 379 -92 2193 94 7 10 chr3 35934601 35934908 -182102250 + AluSx SINE Alu 1 306 -6 240 234 13 39 chr3 35934978 35935055 -182102103 + GA-rich Low_complexity Low_complexity 1 75 0 746 125 0 76 chr3 35935107 35935251 -182101907 + FLAM_C SINE Alu 11 143 0 225 119 0 0 chr3 35935442 35935484 -182101674 + (TG)n Simple_repeat Simple_repeat 2 43 0 2294 98 3 3 chr3 35935507 35935813 -182101345 + AluSq SINE Alu 1 306 -7 1066 186 55 122 chr3 35935873 35936064 -182101094 + MLT2C2 LTR ERVL 52 254 -210 2259 88 0 7 chr3 35936064 35936372 -182100786 + AluSg SINE Alu 1 306 0 1066 186 55 122 chr3 35936372 35936572 -182100586 + MLT2C2 LTR ERVL 254 415 -49 450 53 0 0 chr3 35936572 35936629 -182100529 + (CA)n Simple_repeat Simple_repeat 1 57 0 1066 186 55 122 chr3 35936629 35936671 -182100487 + MLT2C2 LTR ERVL 415 458 -6 305 245 0 0 chr3 35936679 35936732 -182100426 - MER45 DNA AcHobo -900 53 1 181 235 0 111 chr3 35937153 35937234 -182099924 - L2 LINE L2 -106 3207 3136 1678 179 6 39 chr3 35937235 35937599 -182099559 + MLT1A1 LTR MaLR 1 352 -13 436 315 25 31 chr3 35937617 35937779 -182099379 - L2 LINE L2 -303 3010 2850 1936 89 0 0 chr3 35937786 35938022 -182099136 + AluSx SINE Alu 7 242 -70 221 0 0 33 chr3 35938036 35938066 -182099092 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 35938103 35938126 -182099032 + AT_rich Low_complexity Low_complexity 1 23 0 412 290 112 35 chr3 35938251 35938420 -182098738 + MIR SINE MIR 81 262 0 207 241 19 0 chr3 35938428 35938482 -182098676 + (TTA)n Simple_repeat Simple_repeat 2 56 0 342 0 0 0 chr3 35938579 35938617 -182098541 + (TG)n Simple_repeat Simple_repeat 1 38 0 2006 110 26 0 chr3 35938617 35938889 -182098269 - AluSx SINE Alu -33 279 1 1730 169 3 34 chr3 35939013 35939309 -182097849 + AluJo SINE Alu 9 295 -17 1974 118 42 7 chr3 35939411 35939700 -182097458 - AluSc SINE Alu -10 299 1 353 70 35 8 chr3 35939701 35939769 -182097389 - Alu SINE Alu 0 301 244 557 147 0 0 chr3 35939872 35939967 -182097191 + L1MA5 LINE L1 6064 6158 -142 823 140 13 6 chr3 35940029 35940186 -182096972 + L1MA5 LINE L1 6143 6300 0 1988 151 0 10 chr3 35940189 35940488 -182096670 + AluSx SINE Alu 1 296 -16 467 253 0 35 chr3 35940488 35940662 -182096496 - L1M4 LINE L1 -980 5166 4999 1300 137 10 5 chr3 35940667 35940864 -182096294 - AluSg/x SINE Alu -16 296 99 1375 248 14 6 chr3 35941148 35941499 -182095659 + LTR16A LTR ERVL 92 445 -5 344 306 124 61 chr3 35942481 35942925 -182094233 + L2 LINE L2 2465 2936 -378 261 373 75 63 chr3 35942952 35943220 -182093938 + L2 LINE L2 3002 3272 0 229 331 57 24 chr3 35943656 35943780 -182093378 + MIR SINE MIR 70 197 -65 2084 97 30 20 chr3 35943938 35944113 -182093045 - AluSq SINE Alu -12 301 120 513 0 0 0 chr3 35944113 35944170 -182092988 + (TG)n Simple_repeat Simple_repeat 2 58 0 2084 97 30 20 chr3 35944170 35944292 -182092866 - AluSq SINE Alu -193 120 1 646 176 42 21 chr3 35944433 35944575 -182092583 - MIR SINE MIR -44 218 74 883 225 48 0 chr3 35944588 35944797 -182092361 - MIR SINE MIR 0 262 44 2098 104 57 10 chr3 35945362 35945660 -182091498 - AluSx SINE Alu 0 312 1 776 238 145 9 chr3 35945870 35946097 -182091061 - MIR SINE MIR -3 259 2 189 404 0 0 chr3 35946311 35946405 -182090753 + L2 LINE L2 3218 3311 -2 2214 93 10 3 chr3 35946572 35946874 -182090284 - AluSq SINE Alu -9 304 1 785 273 61 9 chr3 35946895 35947126 -182090032 - MIR SINE MIR -19 243 1 481 288 34 68 chr3 35947376 35947581 -182089577 - L2 LINE L2 0 3272 3075 180 363 12 12 chr3 35947583 35947663 -182089495 - L2 LINE L2 -307 2965 2886 292 305 123 65 chr3 35947704 35947775 -182089383 - L2 LINE L2 -556 2758 2693 2191 84 7 0 chr3 35947775 35948060 -182089098 + AluSx SINE Alu 1 287 -25 292 305 123 65 chr3 35948060 35948083 -182089075 - L2 LINE L2 -621 2693 2673 228 67 0 0 chr3 35948083 35948113 -182089045 + (TA)n Simple_repeat Simple_repeat 2 31 0 292 305 123 65 chr3 35948113 35948600 -182088558 - L2 LINE L2 -641 2673 2142 305 312 128 82 chr3 35948856 35949356 -182087802 + L1M2 LINE L1 910 1432 -5417 355 312 118 29 chr3 35949689 35949859 -182087299 + MIR3 SINE MIR 18 202 -6 185 327 64 36 chr3 35949923 35950033 -182087125 - MIR SINE MIR -116 146 34 1884 149 14 0 chr3 35950456 35950744 -182086414 + AluSx SINE Alu 1 292 -20 288 0 0 0 chr3 35951260 35951292 -182085866 + (CA)n Simple_repeat Simple_repeat 1 32 0 2339 78 7 7 chr3 35951834 35952143 -182085015 + AluY SINE Alu 1 309 -2 24 67 0 0 chr3 35952752 35952797 -182084361 + AT_rich Low_complexity Low_complexity 1 45 0 21 82 0 0 chr3 35953237 35953286 -182083872 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr3 35955474 35955498 -182081660 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr3 35956627 35956660 -182080498 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr3 35956778 35956821 -182080337 + AT_rich Low_complexity Low_complexity 1 43 0 2231 113 0 0 chr3 35957167 35957459 -182079699 - AluSq SINE Alu -21 292 1 743 213 0 38 chr3 35958681 35958841 -182078317 - AluSp SINE Alu -24 289 136 2358 91 0 10 chr3 35959793 35960100 -182077058 + AluSg SINE Alu 1 304 -6 1866 121 78 11 chr3 35961570 35961852 -182075306 + AluSq SINE Alu 1 301 -12 637 160 0 0 chr3 35961899 35961999 -182075159 - AluSg/x SINE Alu -25 287 188 621 249 42 0 chr3 35963645 35963810 -182073348 - MER20 DNA MER1_type 0 219 48 215 0 0 62 chr3 35964193 35964225 -182072933 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 577 234 97 72 chr3 35964347 35964625 -182072533 + MLT1J LTR MaLR 227 511 0 1744 125 90 11 chr3 35964708 35964987 -182072171 + AluSx SINE Alu 1 301 -11 21 82 0 0 chr3 35965093 35965142 -182072016 + AT_rich Low_complexity Low_complexity 1 49 0 578 250 12 55 chr3 35965719 35965883 -182071275 + MIR SINE MIR 91 247 -15 207 276 17 0 chr3 35965910 35965968 -182071190 + CT-rich Low_complexity Low_complexity 4 62 0 514 320 96 45 chr3 35966513 35967162 -182069996 - L1M4 LINE L1 -743 5403 4722 389 212 23 30 chr3 35967296 35967428 -182069730 - L1ME3 LINE L1 -1 6161 6031 431 146 52 10 chr3 35967667 35967763 -182069395 + MLT1C LTR MaLR 1 100 -367 280 281 22 14 chr3 35967758 35967897 -182069261 + MLT1C LTR MaLR 206 345 -122 * 302 95 0 0 chr3 35967929 35967971 -182069187 + MLT1C LTR MaLR 426 467 0 608 307 93 58 chr3 35968239 35968634 -182068524 - L1M4 LINE L1 -2344 3802 3377 1022 222 209 3 chr3 35968634 35968954 -182068204 + MER58D DNA MER1_type 1 386 0 608 307 93 58 chr3 35968954 35969161 -182067997 - L1M4 LINE L1 -2769 3377 3179 260 234 69 21 chr3 35969301 35969446 -182067712 - L1M4 LINE L1 -3261 2885 2734 25 0 0 0 chr3 35969883 35969908 -182067250 + AT_rich Low_complexity Low_complexity 1 25 0 208 357 32 14 chr3 35970549 35970682 -182066476 + MIR SINE MIR 63 196 -66 879 146 0 21 chr3 35970836 35970980 -182066178 - AluJo/FRAM SINE Alu 0 312 172 1634 190 3 0 chr3 35970851 35971135 -182066023 - AluJo SINE Alu -12 300 16 286 301 43 0 chr3 35972114 35972207 -182064951 + MIR SINE MIR 154 250 -12 1916 144 3 3 chr3 35972589 35972874 -182064284 + AluSx SINE Alu 19 303 -9 335 319 59 55 chr3 35972874 35973128 -182064030 + HAL1 LINE L1 1026 1280 -1227 285 224 13 26 chr3 35973407 35973483 -182063675 + HAL1 LINE L1 1602 1676 -831 25 0 0 0 chr3 35973829 35973854 -182063304 + AT_rich Low_complexity Low_complexity 1 25 0 473 167 16 95 chr3 35973924 35974050 -182063108 - Charlie1 DNA MER1_type 0 2761 2646 1916 149 3 3 chr3 35974050 35974345 -182062813 - AluJb SINE Alu -15 297 3 22 0 0 0 chr3 35975147 35975169 -182061989 + AT_rich Low_complexity Low_complexity 1 22 0 839 297 42 67 chr3 35975272 35975685 -182061473 + MLT1H LTR MaLR 3 362 -193 31 26 0 0 chr3 35976656 35976694 -182060464 + AT_rich Low_complexity Low_complexity 1 38 0 2111 82 46 0 chr3 35977063 35977344 -182059814 - AluSq SINE Alu -19 294 1 554 233 23 34 chr3 35978448 35978624 -182058534 - MER104 DNA Tc2 -6 174 1 1536 167 38 3 chr3 35979459 35979752 -182057406 - AluJo SINE Alu -8 304 2 604 200 126 7 chr3 35979838 35979973 -182057185 + MER3 DNA MER1_type 59 209 0 211 243 136 82 chr3 35981574 35981780 -182055378 + MIR SINE MIR 35 251 -11 2127 116 3 0 chr3 35982446 35982740 -182054418 + AluSx SINE Alu 1 295 -17 33 43 0 0 chr3 35983608 35983655 -182053503 + AT_rich Low_complexity Low_complexity 1 47 0 206 267 0 17 chr3 35983828 35983888 -182053270 + (CCA)n Simple_repeat Simple_repeat 3 61 0 1904 112 18 0 chr3 35984118 35984422 -182052736 + AluSx SINE Alu 1 309 0 29 47 0 0 chr3 35985123 35985166 -182051992 + AT_rich Low_complexity Low_complexity 1 43 0 938 133 209 5 chr3 35985239 35985435 -182051723 + MER46A DNA MER2_type 1 236 0 23 33 0 0 chr3 35985580 35985610 -182051548 + AT_rich Low_complexity Low_complexity 1 30 0 293 315 77 5 chr3 35986126 35986279 -182050879 + MIR SINE MIR 7 159 -49 1491 176 36 19 chr3 35986675 35986982 -182050176 + AluJb SINE Alu 1 312 0 2216 98 0 0 chr3 35987228 35987524 -182049634 + AluSc SINE Alu 1 296 -13 553 198 60 0 chr3 35990275 35990391 -182046767 + L2 LINE L2 3187 3309 -4 35 63 0 0 chr3 35991481 35991544 -182045614 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr3 35992742 35992764 -182044394 + AT_rich Low_complexity Low_complexity 1 22 0 295 130 0 0 chr3 35992796 35992842 -182044316 - MADE1 DNA Mariner -34 46 1 226 313 52 24 chr3 35993173 35993384 -182043774 + L1MC4a LINE L1 3348 3564 -2582 645 291 65 34 chr3 35993557 35993973 -182043185 + L1MC4a LINE L1 3796 4224 -1922 2303 100 0 0 chr3 35994028 35994327 -182042831 + AluSq SINE Alu 1 299 -14 957 177 80 26 chr3 35994331 35994557 -182042601 - Tigger2 DNA MER2_type 0 2718 2481 * 12141 147 60 9 chr3 35994540 35996708 -182040450 - Tigger2 DNA MER2_type -439 2279 1 316 266 70 72 chr3 35996754 35997238 -182039920 + L1MC4a LINE L1 4386 4868 -1278 1659 246 99 34 chr3 35997452 35997502 -182039656 + L1MC4a LINE L1 5390 5435 -721 1558 204 0 0 chr3 35997502 35997791 -182039367 + AluJo SINE Alu 1 289 -23 1659 246 99 34 chr3 35997791 35998433 -182038725 + L1MC4a LINE L1 5435 5651 -505 23 0 0 0 chr3 35998460 35998483 -182038675 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 35998900 35998922 -182038236 + AT_rich Low_complexity Low_complexity 1 22 0 514 311 93 44 chr3 35999046 35999316 -182037842 - L2 LINE L2 -4 3309 3027 2023 88 84 7 chr3 35999319 35999604 -182037554 + AluSc SINE Alu 3 309 0 542 123 0 0 chr3 36000424 36000505 -182036653 - AluS SINE Alu -232 81 1 1597 184 22 0 chr3 36000628 36000932 -182036226 + AluSx SINE Alu 1 310 0 21 0 0 0 chr3 36001198 36001219 -182035939 + AT_rich Low_complexity Low_complexity 1 21 0 1684 176 7 14 chr3 36001690 36001979 -182035179 - AluJo SINE Alu -25 287 1 21 0 0 0 chr3 36003755 36003776 -182033382 + AT_rich Low_complexity Low_complexity 1 21 0 221 354 0 42 chr3 36004179 36004275 -182032883 + MIR SINE MIR 21 112 -150 2326 95 3 0 chr3 36004499 36004804 -182032354 + AluSq SINE Alu 1 306 -7 2426 80 3 0 chr3 36004805 36005117 -182032041 + AluSp SINE Alu 1 313 0 21 82 0 0 chr3 36006399 36006448 -182030710 + AT_rich Low_complexity Low_complexity 1 49 0 896 157 74 65 chr3 36006467 36006684 -182030474 + MER20 DNA MER1_type 1 219 0 579 132 149 50 chr3 36006729 36006850 -182030308 - FLAM_C SINE Alu 0 133 1 29 78 0 0 chr3 36006855 36006919 -182030239 + AT_rich Low_complexity Low_complexity 1 64 0 236 319 112 9 chr3 36007706 36007822 -182029336 + MIR SINE MIR 103 230 -32 181 298 209 13 chr3 36007993 36008151 -182029007 + MIR SINE MIR 10 198 -64 25 65 0 0 chr3 36008262 36008308 -182028850 + AT_rich Low_complexity Low_complexity 1 46 0 2286 78 0 7 chr3 36008396 36008690 -182028468 + AluSc SINE Alu 1 292 -17 2017 114 7 4 chr3 36008978 36009259 -182027899 + AluSx SINE Alu 1 282 -30 1590 147 23 80 chr3 36009344 36009643 -182027515 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 36009712 36009732 -182027426 + (CA)n Simple_repeat Simple_repeat 1 20 0 1449 154 62 0 chr3 36009763 36010035 -182027123 + AluJb SINE Alu 13 301 -11 1257 142 0 14 chr3 36010041 36010253 -182026905 + AluSg/x SINE Alu 83 291 -19 379 54 0 279 chr3 36010442 36010553 -182026605 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chr3 36013702 36013731 -182023427 + AT_rich Low_complexity Low_complexity 1 29 0 380 241 186 68 chr3 36013909 36014129 -182023029 - L2 LINE L2 -3 3310 3065 31 26 0 0 chr3 36014151 36014189 -182022969 + AT_rich Low_complexity Low_complexity 1 38 0 1494 176 3 49 chr3 36014968 36015274 -182021884 + AluJo SINE Alu 1 292 -20 2198 98 0 0 chr3 36016479 36016774 -182020384 + AluSq SINE Alu 1 295 -18 2037 108 18 0 chr3 36017326 36017604 -182019554 + AluSx SINE Alu 1 283 -29 800 97 28 23 chr3 36017615 36017635 -182019523 + A-rich Low_complexity Low_complexity 4 22 -158 2244 101 0 0 chr3 36017635 36017932 -182019226 + AluSg SINE Alu 1 297 -13 800 97 28 23 chr3 36017932 36018087 -182019071 + A-rich Low_complexity Low_complexity 22 180 0 276 91 0 0 chr3 36018087 36018131 -182019027 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 245 277 54 45 chr3 36018342 36018454 -182018704 + L1MEd LINE L1 502 614 -5505 373 312 151 9 chr3 36018595 36018813 -182018345 + L1MEd LINE L1 1008 1256 -4863 1895 236 70 34 chr3 36018856 36019483 -182017675 - L1M4 LINE L1 -1686 4460 3811 1548 189 78 22 chr3 36019494 36019854 -182017304 - MLT1D LTR MaLR -19 486 107 2061 147 0 6 chr3 36019856 36020170 -182016988 + AluSx SINE Alu 1 312 0 2267 110 0 16 chr3 36020172 36020489 -182016669 + AluSx SINE Alu 1 312 0 29 0 0 0 chr3 36020709 36020738 -182016420 + AT_rich Low_complexity Low_complexity 1 29 0 1099 76 0 0 chr3 36021310 36021441 -182015717 - AluSg SINE Alu -179 131 1 60 73 0 0 chr3 36021555 36021678 -182015480 + AT_rich Low_complexity Low_complexity 1 123 0 1890 114 51 0 chr3 36021926 36022199 -182014959 - AluSx SINE Alu -25 287 1 215 275 43 29 chr3 36022238 36022307 -182014851 + L2 LINE L2 3201 3270 -2 369 0 0 0 chr3 36023034 36023075 -182014083 + (CA)n Simple_repeat Simple_repeat 1 41 0 868 215 0 0 chr3 36023639 36023802 -182013356 - FRAM SINE Alu -13 163 1 2381 106 0 3 chr3 36024709 36025020 -182012138 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr3 36025332 36025355 -182011803 + AT_rich Low_complexity Low_complexity 1 23 0 2256 110 7 3 chr3 36025358 36025666 -182011492 + AluSx SINE Alu 1 309 -3 889 103 0 0 chr3 36026336 36026453 -182010705 + AluSp SINE Alu 1 117 -196 1301 172 57 4 chr3 36026453 36026680 -182010478 - AluSx SINE Alu -73 239 1 3070 268 94 47 chr3 36026713 36027220 -182009938 + HAL1 LINE L1 781 1263 -1244 2081 132 3 0 chr3 36027220 36027507 -182009651 + AluSx SINE Alu 1 288 -24 3070 268 94 47 chr3 36027507 36028266 -182008892 + HAL1 LINE L1 1263 1985 -522 1930 163 0 0 chr3 36028266 36028567 -182008591 + AluJb SINE Alu 1 301 -11 1654 183 0 31 chr3 36028571 36028893 -182008265 + AluSq SINE Alu 1 312 -1 3070 268 94 47 chr3 36028893 36029270 -182007888 + HAL1 LINE L1 1987 2507 0 1437 182 3 85 chr3 36029505 36029845 -182007313 + AluJo SINE Alu 1 312 0 435 233 180 13 chr3 36029876 36030026 -182007132 + MER5B DNA MER1_type 2 176 -2 3668 203 21 76 chr3 36030221 36031246 -182005912 + LTR5 LTR ERVK 1 969 0 25 0 0 0 chr3 36032002 36032027 -182005131 + AT_rich Low_complexity Low_complexity 1 25 0 2409 92 3 0 chr3 36033645 36033950 -182003208 + AluSg SINE Alu 1 306 -4 378 0 0 0 chr3 36034211 36034253 -182002905 + (CA)n Simple_repeat Simple_repeat 1 42 0 1744 189 0 0 chr3 36035020 36035311 -182001847 + AluJo SINE Alu 13 303 -9 2340 69 3 13 chr3 36035857 36036162 -182000996 - AluSq SINE Alu -11 302 1 195 42 0 0 chr3 36036163 36036187 -182000971 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2218 108 7 0 chr3 36036417 36036724 -182000434 - AluSx SINE Alu -3 309 1 325 272 73 37 chr3 36036830 36036966 -182000192 + L2 LINE L2 3172 3312 -1 230 219 67 84 chr3 36037223 36037342 -181999816 + MLT1J LTR MaLR 11 127 -384 329 258 0 21 chr3 36037814 36037911 -181999247 + HERVL32 LTR ERVL 3323 3417 -1 2482 80 3 3 chr3 36037911 36038223 -181998935 + AluSp SINE Alu 1 312 -1 497 228 60 42 chr3 36038280 36038495 -181998663 + LTR32 LTR ERVL 87 305 -166 445 203 39 39 chr3 36038829 36038957 -181998201 + MIR SINE MIR 91 218 -44 2163 130 0 3 chr3 36039099 36039406 -181997752 + AluSq SINE Alu 1 306 -7 536 179 38 0 chr3 36039406 36039512 -181997646 - MLT1D LTR MaLR -394 111 2 894 264 108 12 chr3 36039515 36039822 -181997336 - L1MEc LINE L1 -2353 3862 3503 1325 233 36 3 chr3 36039822 36040123 -181997035 - AluJo SINE Alu -1 311 1 894 264 108 12 chr3 36040123 36040231 -181996927 - L1MEc LINE L1 -2712 3503 3407 1894 92 70 35 chr3 36040238 36040522 -181996636 - AluSx SINE Alu -17 295 2 21 0 0 0 chr3 36040592 36040613 -181996545 + AT_rich Low_complexity Low_complexity 1 21 0 1338 143 123 4 chr3 36040774 36041018 -181996140 - AluSx SINE Alu -9 303 31 1135 206 38 15 chr3 36041028 36041316 -181995842 - MER61B LTR ERV1 -29 396 1 2312 100 7 0 chr3 36041357 36041667 -181995491 - AluSx SINE Alu 0 312 1 1502 202 104 116 chr3 36041667 36042602 -181994556 - L1MEc LINE L1 -2800 3415 2492 2770 278 65 16 chr3 36042635 36043886 -181993272 - L1MEc LINE L1 -5004 1392 80 381 136 25 37 chr3 36043890 36043971 -181993187 + L1MA9 LINE L1 6025 6104 -208 2371 86 0 43 chr3 36043973 36044299 -181992859 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 36044308 36044330 -181992828 + AT_rich Low_complexity Low_complexity 1 22 0 256 274 5 79 chr3 36044335 36044550 -181992608 + L1MA9 LINE L1 6112 6310 -2 1080 148 13 93 chr3 36044741 36044826 -181992332 + L1MA9 LINE L1 6027 6117 -195 1544 199 0 43 chr3 36044826 36045148 -181992010 + AluSx SINE Alu 5 312 0 261 0 0 0 chr3 36045150 36045179 -181991979 + (TA)n Simple_repeat Simple_repeat 1 29 0 1080 148 13 93 chr3 36045179 36045400 -181991758 + L1MA9 LINE L1 6118 6311 -1 2181 115 3 16 chr3 36046058 36046372 -181990786 - AluSg SINE Alu 0 310 1 221 203 0 0 chr3 36046398 36046455 -181990703 + MIR SINE MIR 104 144 -64 207 0 0 0 chr3 36046827 36046850 -181990308 + (T)n Simple_repeat Simple_repeat 1 23 0 2319 110 0 16 chr3 36047116 36047433 -181989725 + AluSx SINE Alu 1 312 0 29 0 0 0 chr3 36047653 36047682 -181989476 + AT_rich Low_complexity Low_complexity 1 29 0 1099 76 0 0 chr3 36048255 36048386 -181988772 - AluSg SINE Alu -179 131 1 60 73 0 0 chr3 36048500 36048623 -181988535 + AT_rich Low_complexity Low_complexity 1 123 0 868 240 5 10 chr3 36049108 36049312 -181987846 - MER82 DNA MER2_type 0 653 451 218 315 0 0 chr3 36049401 36049455 -181987703 + L2 LINE L2 3214 3267 -5 351 223 62 15 chr3 36049608 36049738 -181987420 + L1MB5 LINE L1 6030 6165 -9 2340 161 9 78 chr3 36050639 36051218 -181985940 + L1MD3 LINE L1 7443 7981 -14 2129 98 7 0 chr3 36052621 36052906 -181984252 + AluSp SINE Alu 1 287 -26 724 172 9 9 chr3 36053317 36053433 -181983725 + FLAM_C SINE Alu 1 116 -17 29 0 0 0 chr3 36053434 36053463 -181983695 + AT_rich Low_complexity Low_complexity 1 29 0 2200 115 0 0 chr3 36053472 36053768 -181983390 + AluSx SINE Alu 1 296 -16 22 56 0 0 chr3 36054194 36054230 -181982928 + AT_rich Low_complexity Low_complexity 1 36 0 443 66 0 0 chr3 36054859 36054920 -181982238 - Alu SINE Alu -9 303 243 1578 145 85 0 chr3 36054920 36055168 -181981990 + AluSx SINE Alu 37 305 -7 4009 188 90 19 chr3 36056415 36057497 -181979661 - Charlie1 DNA MER1_type -19 2742 1585 25 31 0 0 chr3 36057561 36057593 -181979565 + AT_rich Low_complexity Low_complexity 1 32 0 1883 131 6 32 chr3 36057997 36058310 -181978848 + AluSx SINE Alu 1 305 -7 303 214 0 0 chr3 36059256 36059326 -181977832 + (TA)n Simple_repeat Simple_repeat 1 70 0 1909 145 10 7 chr3 36059327 36059624 -181977534 - AluSx SINE Alu -14 298 1 252 0 0 0 chr3 36060497 36060525 -181976633 + (CA)n Simple_repeat Simple_repeat 1 28 0 1010 136 0 13 chr3 36060537 36060720 -181976438 + AluSg/x SINE Alu 134 312 0 558 207 0 0 chr3 36060803 36060919 -181976239 + FLAM_C SINE Alu 26 141 -2 1718 172 7 10 chr3 36060966 36061257 -181975901 + AluSx SINE Alu 1 290 -22 318 294 75 38 chr3 36061442 36061602 -181975556 + L1ME LINE L1 5497 5662 -459 982 81 25 69 chr3 36062296 36062435 -181974723 + AluSq SINE Alu 1 134 -179 2303 74 3 19 chr3 36062435 36062746 -181974412 + AluY SINE Alu 1 306 -5 982 81 25 69 chr3 36062746 36062766 -181974392 + AluSq SINE Alu 134 153 -160 579 74 0 0 chr3 36062766 36062847 -181974311 + AluSp/q SINE Alu 220 300 -13 853 152 59 150 chr3 36062884 36063212 -181973946 + MER61B LTR ERV1 1 396 -29 1584 121 73 4 chr3 36063222 36063470 -181973688 + AluSx SINE Alu 31 295 -17 1919 98 47 0 chr3 36063715 36063992 -181973166 + AluSg SINE Alu 1 290 -20 1251 172 46 23 chr3 36064037 36064326 -181972832 + MER61B LTR ERV1 1 396 -28 1752 110 38 8 chr3 36064335 36064599 -181972559 + AluSx SINE Alu 31 302 -10 180 0 0 0 chr3 36064764 36064784 -181972374 + (A)n Simple_repeat Simple_repeat 1 20 0 2289 82 20 0 chr3 36064968 36065272 -181971886 + AluY SINE Alu 1 310 -1 2474 50 7 3 chr3 36065459 36065762 -181971396 + AluY SINE Alu 1 304 -7 1822 123 0 89 chr3 36065835 36066159 -181970999 + AluSx SINE Alu 1 295 -17 279 273 62 45 chr3 36066304 36066480 -181970678 - MIR SINE MIR -76 186 8 1529 101 0 24 chr3 36067300 36067508 -181969650 - AluSx SINE Alu -99 213 11 628 225 36 0 chr3 36067718 36067856 -181969302 + FAM SINE Alu 1 143 -42 559 289 62 54 chr3 36067872 36068114 -181969044 + MIR SINE MIR 11 254 -8 2020 142 3 0 chr3 36068119 36068415 -181968743 + AluSx SINE Alu 5 301 -11 1637 153 97 43 chr3 36068443 36068836 -181968322 - MER21B LTR ERV1 -1 862 449 1761 89 13 0 chr3 36068836 36069060 -181968098 + AluSp SINE Alu 74 300 -13 234 208 0 0 chr3 36069879 36069927 -181967231 - MER41A LTR ERV1 -111 443 396 2069 103 0 4 chr3 36069951 36070232 -181966926 + AluSc SINE Alu 1 280 -29 240 35 0 0 chr3 36070235 36070264 -181966894 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 408 247 93 6 chr3 36070382 36070544 -181966614 + MER112 DNA MER1_type 74 249 -11 1666 112 127 12 chr3 36070703 36070962 -181966196 - AluSx SINE Alu -23 289 1 678 148 28 0 chr3 36071606 36071714 -181965444 + AluSq/x SINE Alu 8 118 -194 403 113 0 0 chr3 36071716 36071769 -181965389 + AluS SINE Alu 232 284 -26 31 26 0 0 chr3 36071776 36071814 -181965344 + AT_rich Low_complexity Low_complexity 1 38 0 2253 112 0 0 chr3 36072088 36072384 -181964774 + AluSx SINE Alu 1 296 -16 900 208 0 29 chr3 36072438 36072611 -181964547 + FAM SINE Alu 1 168 -7 1827 136 47 4 chr3 36072739 36073018 -181964140 + AluJb SINE Alu 14 304 -8 1698 109 55 4 chr3 36073743 36073981 -181963177 + AluSg SINE Alu 25 274 -36 1931 108 68 7 chr3 36074129 36074408 -181962750 + AluSx SINE Alu 1 296 -16 258 324 92 23 chr3 36074580 36074753 -181962405 - MIR SINE MIR -38 224 40 1611 135 214 11 chr3 36075803 36076159 -181960999 + MSTA LTR MaLR 1 428 0 180 320 90 30 chr3 36076169 36076269 -181960889 - L2 LINE L2 0 3313 3208 2073 87 17 37 chr3 36076906 36077204 -181959954 - AluSx SINE Alu -20 292 1 2344 75 20 0 chr3 36077525 36077820 -181959338 + AluSx SINE Alu 1 301 -11 1684 132 6 71 chr3 36077995 36078321 -181958837 + AluSx SINE Alu 1 305 -7 1778 162 7 16 chr3 36078426 36078729 -181958429 + AluJb SINE Alu 1 300 -12 1764 164 18 4 chr3 36079541 36079821 -181957337 - AluJb SINE Alu -28 284 1 257 283 152 0 chr3 36080187 36080286 -181956872 + L2 LINE L2 3158 3271 -1 2131 116 10 0 chr3 36081150 36081442 -181955716 + AluSx SINE Alu 5 299 -13 2281 84 0 3 chr3 36081781 36082068 -181955090 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr3 36083114 36083141 -181954017 + GC_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 36083492 36083520 -181953638 + GC_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 36083847 36083869 -181953289 + GC_rich Low_complexity Low_complexity 1 22 0 2390 92 7 0 chr3 36084320 36084625 -181952533 - AluSx SINE Alu -5 307 1 244 298 145 0 chr3 36084656 36084787 -181952371 + MIR SINE MIR 113 262 0 2127 119 0 3 chr3 36084827 36085137 -181952021 + AluSx SINE Alu 1 309 -3 233 201 37 0 chr3 36086007 36086071 -181951087 - MIR SINE MIR -62 146 107 2340 105 0 3 chr3 36086119 36086425 -181950733 - AluSx SINE Alu -7 305 1 222 246 60 93 chr3 36086425 36086467 -181950691 + L2 LINE L2 3143 3185 -128 240 35 0 0 chr3 36086467 36086496 -181950662 + (CA)n Simple_repeat Simple_repeat 2 30 0 222 246 60 93 chr3 36086496 36086630 -181950528 + L2 LINE L2 3185 3313 0 440 148 0 0 chr3 36087132 36087193 -181949965 + AluS SINE Alu 2 62 -256 1184 94 29 12 chr3 36087426 36087713 -181949445 - MER4B LTR ERV1 0 610 261 662 121 0 10 chr3 36087713 36087812 -181949346 - MER4A LTR ERV1 -566 98 1 2313 62 0 10 chr3 36087884 36088198 -181948960 + AluY SINE Alu 1 311 0 1618 161 36 7 chr3 36088558 36088838 -181948320 - AluJb SINE Alu -24 288 1 1017 156 24 0 chr3 36088838 36089005 -181948153 - AluSg/x SINE Alu -11 299 129 1076 146 12 0 chr3 36089005 36089176 -181947982 - AluSc SINE Alu 0 309 137 2065 121 7 3 chr3 36089182 36089472 -181947686 - AluSx SINE Alu -21 291 1 458 172 26 35 chr3 36089476 36089592 -181947566 + L1ME1 LINE L1 6048 6162 -4 2083 107 52 50 chr3 36089744 36090107 -181947051 - THE1B LTR MaLR 0 364 1 1781 148 16 19 chr3 36090253 36090563 -181946595 + AluSx SINE Alu 3 311 -1 232 290 14 0 chr3 36091346 36091415 -181945743 + MIR SINE MIR 81 150 -112 665 241 99 59 chr3 36091416 36091607 -181945551 + MER46C DNA MER2_type 1 212 -126 2165 109 3 0 chr3 36091607 36091891 -181945267 + AluSg1 SINE Alu 1 285 -24 665 241 99 59 chr3 36091891 36092023 -181945135 + MER46C DNA MER2_type 212 337 -1 468 0 0 0 chr3 36092531 36092583 -181944575 + (CA)n Simple_repeat Simple_repeat 1 52 0 1965 113 7 41 chr3 36093023 36093354 -181943804 - AluSp SINE Alu 0 321 1 376 250 0 25 chr3 36093416 36093496 -181943662 + MER21B LTR ERV1 12 89 -774 2297 216 117 74 chr3 36093519 36093690 -181943468 + MER21B LTR ERV1 19 181 -682 2266 104 0 22 chr3 36093690 36094007 -181943151 - AluSx SINE Alu 0 312 3 2297 216 117 74 chr3 36094007 36094642 -181942516 + MER21B LTR ERV1 181 859 -4 2241 116 0 7 chr3 36095188 36095489 -181941669 + AluSq SINE Alu 1 299 -14 1169 213 18 5 chr3 36095935 36096156 -181941002 + MER58A DNA MER1_type 1 224 0 1161 199 5 0 chr3 36096193 36096384 -181940774 + AluSx SINE Alu 1 192 -120 858 149 0 14 chr3 36097370 36097511 -181939647 + AluSc SINE Alu 152 290 -19 2312 95 3 13 chr3 36097800 36098104 -181939054 - AluSp SINE Alu -12 301 1 188 308 140 0 chr3 36098499 36098606 -181938552 + MIR SINE MIR 141 262 0 262 195 212 18 chr3 36098693 36098806 -181938352 + L2 LINE L2 3179 3313 0 1547 98 0 0 chr3 36098898 36099101 -181938057 - AluSg/x SINE Alu -9 300 98 1199 168 9 19 chr3 36099205 36099419 -181937739 - AluJo SINE Alu -100 212 1 348 247 12 0 chr3 36099439 36099520 -181937638 - MIR SINE MIR -22 240 159 2234 108 3 13 chr3 36099801 36100116 -181937042 + AluSq SINE Alu 1 312 -1 228 242 11 66 chr3 36100156 36100247 -181936911 - MARNA DNA Mariner -42 544 459 2114 129 3 7 chr3 36100261 36100563 -181936595 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr3 36100579 36100600 -181936558 + AT_rich Low_complexity Low_complexity 1 21 0 2065 133 0 23 chr3 36100631 36100801 -181936357 - AluSx SINE Alu -10 302 141 1934 110 88 0 chr3 36100801 36101074 -181936084 - AluSg SINE Alu -11 299 3 2065 133 0 23 chr3 36101074 36101212 -181935946 - AluSx SINE Alu -171 141 1 297 318 11 0 chr3 36101284 36101372 -181935786 + MARNA DNA Mariner 261 349 -237 195 274 48 16 chr3 36101412 36101474 -181935684 + L2 LINE L2 3250 3313 0 342 224 129 0 chr3 36101483 36101568 -181935590 + MARNA DNA Mariner 418 513 -73 869 200 205 0 chr3 36101617 36101802 -181935356 - MER45C DNA AcHobo 0 953 731 821 221 22 22 chr3 36101911 36102092 -181935066 - MER45C DNA AcHobo -724 229 49 242 282 45 9 chr3 36102481 36102591 -181934567 - L2 LINE L2 -534 2780 2667 760 137 5 8 chr3 36102780 36102996 -181934162 + AluSx SINE Alu 2 302 -10 1973 121 7 3 chr3 36103238 36103542 -181933616 + AluSx SINE Alu 1 305 0 2243 121 3 0 chr3 36103634 36103941 -181933217 + AluSx SINE Alu 1 308 -4 180 226 57 0 chr3 36104218 36104271 -181932887 + MER5A DNA MER1_type 26 81 -108 651 234 91 29 chr3 36105516 36105932 -181931226 + LTR16C LTR ERVL 1 483 -8 1066 268 91 56 chr3 36106536 36106669 -181930489 + LTR16A LTR ERVL 26 153 -297 2229 103 3 3 chr3 36106669 36106960 -181930198 + AluSx SINE Alu 1 291 -21 1066 268 91 56 chr3 36106960 36107222 -181929936 + LTR16A LTR ERVL 153 435 -15 767 153 0 0 chr3 36107266 36107377 -181929781 + AluJo/FLAM SINE Alu 4 114 -188 2195 117 0 0 chr3 36107377 36107698 -181929460 - AluSx SINE Alu 0 321 1 1739 181 48 12 chr3 36107700 36108031 -181929127 + MLT1A1 LTR MaLR 23 365 0 513 297 116 52 chr3 36108032 36108419 -181928739 - MLT1J2 LTR MaLR -10 440 29 2413 87 0 3 chr3 36109820 36110119 -181927039 + AluSq SINE Alu 1 298 -15 561 222 8 0 chr3 36110301 36110418 -181926740 - L1MB7 LINE L1 -19 6165 6048 1120 158 0 0 chr3 36110418 36110582 -181926576 + U1 snRNA snRNA 1 164 -1 999 194 1 41 chr3 36110610 36110739 -181926419 - L1MB7 LINE L1 -123 6055 5940 2221 102 0 0 chr3 36110739 36111050 -181926108 - AluSq SINE Alu 0 311 1 999 194 1 41 chr3 36111050 36111167 -181925991 - L1MB7 LINE L1 -238 5940 5820 693 86 0 0 chr3 36111167 36111260 -181925898 - AluSg/x SINE Alu -9 300 208 950 201 80 17 chr3 36111268 36111537 -181925621 + L1M4 LINE L1 4174 4464 -1682 1664 170 47 4 chr3 36111537 36111813 -181925345 + AluJo SINE Alu 3 290 -22 950 201 80 17 chr3 36111813 36111831 -181925327 + L1M4 LINE L1 4464 4479 -1667 664 184 9 0 chr3 36111831 36111940 -181925218 + AluJo SINE Alu 26 135 -177 2369 113 0 0 chr3 36111941 36112252 -181924906 + AluSx SINE Alu 1 311 -1 713 170 0 0 chr3 36112543 36112655 -181924503 - AluSq/x SINE Alu -200 113 2 1969 144 6 6 chr3 36112750 36112882 -181924276 + AluSx SINE Alu 1 132 -180 2042 113 0 0 chr3 36112882 36113147 -181924011 + AluSx SINE Alu 27 291 -21 1969 144 6 6 chr3 36113147 36113326 -181923832 + AluSx SINE Alu 131 312 0 1033 156 24 0 chr3 36113326 36113493 -181923665 + AluSg/x SINE Alu 131 301 -11 1633 154 33 7 chr3 36113502 36113775 -181923383 + AluJb SINE Alu 9 288 -24 408 55 0 0 chr3 36114136 36114217 -181922941 - Alu SINE Alu 0 309 229 369 302 0 0 chr3 36164217 36164313 -181872845 - L2 LINE L2 -368 2946 2851 1960 89 0 0 chr3 36164320 36164556 -181872602 + AluSx SINE Alu 7 242 -70 221 0 0 33 chr3 36164570 36164600 -181872558 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 36164637 36164660 -181872498 + AT_rich Low_complexity Low_complexity 1 23 0 322 296 112 35 chr3 36164785 36164954 -181872204 + MIR SINE MIR 81 262 0 207 241 19 0 chr3 36164962 36165016 -181872142 + (TTA)n Simple_repeat Simple_repeat 2 56 0 342 0 0 0 chr3 36165113 36165151 -181872007 + (TG)n Simple_repeat Simple_repeat 1 38 0 1883 122 30 0 chr3 36165151 36165422 -181871736 - AluSx SINE Alu -33 279 1 545 145 0 0 chr3 36165546 36165629 -181871529 + AluJ/FLAM SINE Alu 9 91 -221 1633 177 0 40 chr3 36165730 36166007 -181871151 - AluJo SINE Alu -46 266 1 1303 210 41 34 chr3 36166037 36166300 -181870858 + L1M4 LINE L1 2911 3180 -2966 2034 121 48 38 chr3 36166300 36166671 -181870487 + THE1C LTR MaLR 1 375 0 1303 210 41 34 chr3 36166671 36166849 -181870309 + L1M4 LINE L1 3180 3355 -2791 944 150 20 0 chr3 36166955 36167102 -181870056 + AluSg/x SINE Alu 133 282 -30 180 204 82 0 chr3 36167740 36167789 -181869369 + L2 LINE L2 3219 3271 -1 2104 225 54 33 chr3 36167805 36168320 -181868838 - MLT1E LTR MaLR -11 582 57 306 254 51 43 chr3 36168533 36168671 -181868487 - L2 LINE L2 -200 3072 2934 245 339 46 23 chr3 36168739 36168913 -181868245 + MIR3 SINE MIR 30 207 -1 2112 145 0 0 chr3 36169665 36169975 -181867183 - AluSx SINE Alu -2 310 1 330 87 0 0 chr3 36170526 36170572 -181866586 + (TG)n Simple_repeat Simple_repeat 2 47 0 2059 122 14 0 chr3 36170888 36171196 -181865962 - AluSx SINE Alu 0 312 1 1932 112 76 0 chr3 36171363 36171640 -181865518 - AluSp SINE Alu -15 298 1 2036 165 8 61 chr3 36171675 36172070 -181865088 + MLT1B LTR MaLR 17 390 0 496 170 11 11 chr3 36172116 36172210 -181864948 + MER74A LTR ERVL 30 123 -435 44 35 0 0 chr3 36172383 36172441 -181864717 + AT_rich Low_complexity Low_complexity 1 58 0 2266 128 0 3 chr3 36172561 36172874 -181864284 - AluSx SINE Alu 0 312 1 653 130 20 0 chr3 36173735 36173835 -181863323 + MSTD LTR MaLR 1 102 -294 271 0 0 0 chr3 36173841 36173871 -181863287 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1467 193 0 63 chr3 36173871 36174172 -181862986 - AluJo SINE Alu -1 311 1 39 60 0 0 chr3 36174173 36174240 -181862918 + AT_rich Low_complexity Low_complexity 1 67 0 848 158 0 0 chr3 36174242 36174369 -181862789 - FLAM_C SINE Alu -16 127 1 731 232 105 11 chr3 36174369 36174559 -181862599 + MSTD LTR MaLR 122 329 -67 1842 99 4 16 chr3 36174563 36174806 -181862352 - AluSx SINE Alu -17 295 56 1325 69 6 0 chr3 36175269 36175442 -181861716 + L1PA11 LINE L1 5998 6171 -3 2084 124 13 22 chr3 36176023 36176338 -181860820 + AluSq SINE Alu 1 312 -1 384 349 59 21 chr3 36176501 36176739 -181860419 - MIR SINE MIR -3 259 13 516 172 123 49 chr3 36176892 36177006 -181860152 + MER44D DNA MER2_type 5 109 -2382 2305 100 7 0 chr3 36177006 36177306 -181859852 - AluSp SINE Alu -11 302 1 350 89 0 0 chr3 36177315 36177360 -181859798 - AluSg/x SINE Alu -49 253 209 1988 148 3 0 chr3 36177634 36177925 -181859233 - AluSx SINE Alu -17 295 4 1470 263 121 28 chr3 36179316 36179853 -181857305 + MLT1K LTR MaLR 2 588 0 307 211 0 0 chr3 36180106 36180158 -181857000 + MER44D DNA MER2_type 554 605 0 1749 163 0 30 chr3 36180310 36180611 -181856547 + AluJb SINE Alu 1 292 -20 1351 154 133 39 chr3 36180901 36181186 -181855972 - AluJo SINE Alu 0 312 1 626 122 0 0 chr3 36182194 36182284 -181854874 - AluSp/q SINE Alu -57 256 167 490 228 26 47 chr3 36182395 36182588 -181854570 + L1MC5 LINE L1 7756 7944 -17 2375 36 39 42 chr3 36182679 36182987 -181854171 - AluY SINE Alu -4 307 1 765 210 58 76 chr3 36184173 36184295 -181852863 + ORSL DNA AcHobo 1 124 -151 2279 97 0 0 chr3 36184295 36184593 -181852565 + AluY SINE Alu 1 298 -13 186 43 0 0 chr3 36184593 36184616 -181852542 + (TA)n Simple_repeat Simple_repeat 1 23 0 765 210 58 76 chr3 36184616 36184768 -181852390 + ORSL DNA AcHobo 122 271 -4 904 128 0 0 chr3 36184886 36185011 -181852147 - AluJb SINE Alu -181 131 7 1569 105 5 5 chr3 36185195 36185404 -181851754 + AluSx SINE Alu 1 209 -103 650 208 90 14 chr3 36185404 36185548 -181851610 + AluJo/FRAM SINE Alu 148 302 -10 2955 236 53 30 chr3 36185687 36186529 -181850629 + L1ME2 LINE L1 5293 6154 -10 2570 216 104 64 chr3 36186544 36187569 -181849589 + L1MC5 LINE L1 6607 7678 -283 266 246 74 66 chr3 36187720 36187842 -181849316 - MLT1L LTR MaLR -348 267 145 435 242 128 40 chr3 36188062 36188211 -181848947 - MIR SINE MIR -54 208 47 180 286 0 48 chr3 36188310 36188373 -181848785 - L2 LINE L2 -4 3268 3209 247 300 0 0 chr3 36188749 36188819 -181848339 - MER117 DNA MER1_type -50 147 78 1676 151 88 18 chr3 36188879 36189061 -181848097 + AluJb SINE Alu 1 169 -143 2633 187 57 88 chr3 36189061 36189240 -181847918 - LTR8A LTR ERV1 0 727 544 1790 105 93 0 chr3 36189240 36189536 -181847622 - AluSg SINE Alu 0 320 1 2633 187 57 88 chr3 36189536 36189565 -181847593 - LTR8A LTR ERV1 -183 544 516 2236 110 3 0 chr3 36189565 36189857 -181847301 - AluSq SINE Alu -20 293 1 2633 187 57 88 chr3 36189857 36190396 -181846762 - LTR8A LTR ERV1 -211 516 1 1676 151 88 18 chr3 36190396 36190498 -181846660 + AluJb SINE Alu 169 305 -7 526 336 40 5 chr3 36190579 36190802 -181846356 - MIR SINE MIR -31 231 1 751 122 9 0 chr3 36191204 36191311 -181845847 - AluSg/x SINE Alu -11 298 191 319 86 17 86 chr3 36191461 36191503 -181845655 + AluJo SINE Alu 96 135 -167 2328 102 3 0 chr3 36191503 36191797 -181845361 + AluSq SINE Alu 3 297 -16 319 86 17 86 chr3 36191797 36191812 -181845346 + AluJo SINE Alu 135 149 -153 379 119 0 0 chr3 36191815 36191882 -181845276 - L1MEc LINE L1 -4282 2114 2048 1242 123 33 19 chr3 36191883 36192199 -181844959 + MLT2A2 LTR ERVL 234 453 0 684 186 40 34 chr3 36192199 36192459 -181844699 - L1MEc LINE L1 -4158 2238 1893 4870 253 57 37 chr3 36192526 36192940 -181844218 - L1MEc LINE L1 -4494 1902 1498 454 139 13 0 chr3 36192940 36193019 -181844139 - MADE1 DNA Mariner 0 80 1 4870 253 57 37 chr3 36193019 36194008 -181843150 - L1MEc LINE L1 -4898 1498 530 1069 184 58 0 chr3 36194008 36194215 -181842943 + MER20 DNA MER1_type 1 219 0 4870 253 57 37 chr3 36194215 36194556 -181842602 - L1MEc LINE L1 -5866 530 197 401 75 0 15 chr3 36194556 36194623 -181842535 + (TA)n Simple_repeat Simple_repeat 2 67 0 4870 253 57 37 chr3 36194623 36194715 -181842443 - L1MEc LINE L1 -6199 197 108 2144 122 0 20 chr3 36194715 36195019 -181842139 - AluSx SINE Alu -14 298 1 4870 253 57 37 chr3 36195019 36195039 -181842119 - L1MEc LINE L1 -6288 108 7 291 207 0 37 chr3 36195130 36195212 -181841946 + Charlie8 DNA MER1_type 71 149 -2268 621 249 121 77 chr3 36195301 36195574 -181841584 + LTR33 LTR ERVL 1 285 -236 1499 182 70 40 chr3 36196449 36196751 -181840407 + AluJo SINE Alu 1 311 -1 192 77 0 0 chr3 36196754 36196780 -181840378 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1287 102 6 6 chr3 36196883 36197059 -181840099 - AluSg SINE Alu -134 176 1 2298 96 0 23 chr3 36197084 36197385 -181839773 - AluSg SINE Alu -16 294 1 1402 141 8 25 chr3 36197443 36197685 -181839473 - MER39B LTR ERV1 -3 650 413 1965 116 3 21 chr3 36197686 36197971 -181839187 + AluSx SINE Alu 1 280 -32 218 200 40 0 chr3 36197990 36198040 -181839118 + A-rich Low_complexity Low_complexity 5 56 0 2179 76 152 33 chr3 36198406 36198443 -181838715 + MER39B LTR ERV1 12 43 -610 222 37 0 0 chr3 36198443 36198470 -181838688 + (TC)n Simple_repeat Simple_repeat 1 27 0 2179 76 152 33 chr3 36198470 36198800 -181838358 + MER39B LTR ERV1 43 423 -230 1080 99 7 0 chr3 36198800 36198942 -181838216 - AluSp/q SINE Alu -15 298 156 265 162 14 14 chr3 36200797 36200871 -181836287 + CT-rich Low_complexity Low_complexity 3 76 0 2276 105 3 7 chr3 36200947 36201242 -181835916 + AluSx SINE Alu 1 294 -18 1355 215 33 10 chr3 36201360 36201662 -181835496 + AluJo SINE Alu 3 311 -1 2310 98 0 19 chr3 36201662 36201977 -181835181 + AluY SINE Alu 1 309 -2 2200 84 40 10 chr3 36202057 36202354 -181834804 + AluY SINE Alu 1 306 -5 1074 168 31 75 chr3 36203437 36203569 -181833589 + MER20 DNA MER1_type 1 120 -99 1520 232 118 47 chr3 36203569 36203992 -181833166 - LTR27 LTR ERV1 -1 635 157 2008 152 7 0 chr3 36203992 36204288 -181832870 + AluSp SINE Alu 1 298 -15 1520 232 118 47 chr3 36204288 36204455 -181832703 - LTR27 LTR ERV1 -479 157 3 1074 168 31 75 chr3 36204455 36204548 -181832610 + MER20 DNA MER1_type 120 216 -3 407 258 10 93 chr3 36205211 36205405 -181831753 - MER5B DNA MER1_type 0 178 1 884 203 7 0 chr3 36205415 36205568 -181831590 + FRAM SINE Alu 4 157 -19 2406 87 7 0 chr3 36206134 36206444 -181830714 - AluSp SINE Alu -1 312 1 341 300 30 0 chr3 36207568 36207668 -181829490 + MIR SINE MIR 4 106 -156 23 0 0 0 chr3 36207668 36207691 -181829467 + AT_rich Low_complexity Low_complexity 1 23 0 1137 142 0 0 chr3 36207692 36207854 -181829304 - AluSg/x SINE Alu -22 290 129 184 98 244 0 chr3 36207858 36207899 -181829259 + MIR SINE MIR 93 143 -119 783 170 7 15 chr3 36207906 36208041 -181829117 - AluJo SINE Alu -177 135 2 337 214 36 12 chr3 36208413 36208497 -181828661 + LTR16A1 LTR ERVL 346 431 -26 347 224 0 0 chr3 36208497 36208564 -181828594 + MIR SINE MIR 186 252 -10 2174 110 0 7 chr3 36209056 36209346 -181827812 + AluSx SINE Alu 1 288 -24 183 344 0 16 chr3 36209567 36209628 -181827530 + L2 LINE L2 3127 3186 -86 705 175 0 8 chr3 36209933 36210053 -181827105 + FLAM_A SINE Alu 16 134 -8 226 291 116 0 chr3 36210233 36210319 -181826839 + MIR3 SINE MIR 65 160 -48 905 230 10 0 chr3 36210324 36210524 -181826634 - MER3 DNA MER1_type -5 204 3 2180 100 7 23 chr3 36210626 36210927 -181826231 + AluSx SINE Alu 1 296 -16 1597 182 6 43 chr3 36211399 36211728 -181825430 - MLT1A1 LTR MaLR -48 317 1 204 285 122 87 chr3 36211729 36211901 -181825257 + L2 LINE L2 3136 3313 0 2340 96 0 0 chr3 36212037 36212330 -181824828 - AluSx SINE Alu -19 293 1 1504 248 14 6 chr3 36212391 36212742 -181824416 + LTR16A LTR ERVL 92 445 -5 2384 102 0 3 chr3 36213814 36214127 -181823031 + AluSq SINE Alu 1 312 -1 1943 115 0 77 chr3 36214153 36214465 -181822693 + AluSx SINE Alu 1 288 -24 1344 141 31 39 chr3 36214785 36214860 -181822298 - L1MC2 LINE L1 -2 6342 6268 2345 98 0 10 chr3 36214860 36215166 -181821992 + AluSx SINE Alu 1 303 -9 1344 141 31 39 chr3 36215166 36215345 -181821813 - L1MC2 LINE L1 -76 6268 6090 1041 213 142 43 chr3 36215453 36215584 -181821574 - L1ME2 LINE L1 -132 6032 5915 2154 125 0 0 chr3 36215584 36215873 -181821285 - AluSg SINE Alu -21 289 1 1041 213 142 43 chr3 36215873 36216093 -181821065 - L1ME2 LINE L1 -249 5915 5646 1380 168 111 68 chr3 36216117 36216541 -181820617 + LTR7 LTR ERV1 1 442 -8 2296 189 42 43 chr3 36216549 36217410 -181819748 + HERVH LTR ERV1 1 1182 -6531 1466 157 4 25 chr3 36217408 36217682 -181819476 + HERVH LTR ERV1 2728 2995 -4718 * 7238 128 5 8 chr3 36217661 36219379 -181817779 + HERVH LTR ERV1 3140 5286 -1805 3078 81 7 11 chr3 36219382 36219815 -181817343 + HERVH LTR ERV1 7283 7713 0 1230 171 92 123 chr3 36219815 36220271 -181816887 + LTR7 LTR ERV1 1 442 -8 1713 175 3 14 chr3 36220272 36220558 -181816600 - AluJo SINE Alu -29 283 1 905 211 26 5 chr3 36220558 36220748 -181816410 - L1ME2 LINE L1 -507 5657 5464 2351 109 0 0 chr3 36220794 36221098 -181816060 + AluSg1 SINE Alu 1 304 -5 3266 151 9 7 chr3 36221306 36221862 -181815296 - L1P LINE L1 -1174 4972 4416 201 359 9 9 chr3 36221981 36222087 -181815071 - MIR SINE MIR 0 262 157 182 294 0 0 chr3 36222624 36222675 -181814483 + MIR SINE MIR 211 261 -1 180 111 0 0 chr3 36222714 36222741 -181814417 + (TAG)n Simple_repeat Simple_repeat 3 29 0 281 96 19 19 chr3 36222929 36222981 -181814177 - MIR SINE MIR -121 141 90 554 308 13 36 chr3 36223722 36223946 -181813212 + MIR SINE MIR 18 236 -26 1677 110 0 45 chr3 36225518 36225763 -181811395 + AluSg SINE Alu 1 234 -76 1315 148 0 10 chr3 36225865 36226067 -181811091 + AluSg/x SINE Alu 97 296 -14 553 220 126 5 chr3 36226069 36226260 -181810898 + L1ME1 LINE L1 2257 2470 -3676 443 219 19 0 chr3 36226268 36226373 -181810785 + L1ME1 LINE L1 3825 3931 -2215 225 164 0 90 chr3 36226876 36226903 -181810255 - L1ME4a LINE L1 -1 6120 6092 2187 122 0 3 chr3 36226903 36227214 -181809944 + AluSx SINE Alu 1 310 -2 225 164 0 90 chr3 36227214 36227253 -181809905 - L1ME4a LINE L1 -29 6092 6060 3127 193 57 147 chr3 36227414 36228080 -181809078 + L1ME1 LINE L1 3912 4636 -1530 1378 206 28 28 chr3 36228080 36228367 -181808791 + AluJo SINE Alu 6 292 -20 3127 193 57 147 chr3 36228367 36229145 -181808013 + L1ME1 LINE L1 4636 5483 -683 2398 73 0 25 chr3 36229145 36229461 -181807697 + AluY SINE Alu 1 308 -3 3127 193 57 147 chr3 36229461 36229728 -181807430 + L1ME1 LINE L1 5483 5655 -511 2015 134 13 0 chr3 36229728 36230034 -181807124 + AluSx SINE Alu 1 310 -2 3127 193 57 147 chr3 36230034 36230380 -181806778 + L1ME1 LINE L1 5655 6031 -135 1558 152 3 87 chr3 36231014 36231350 -181805808 + AluJo SINE Alu 1 310 0 1276 187 0 123 chr3 36231810 36232015 -181805143 - AluSx SINE Alu -10 302 154 1679 127 4 4 chr3 36232015 36232252 -181804906 - AluSg SINE Alu -13 297 61 1276 187 0 123 chr3 36232252 36232388 -181804770 - AluSx SINE Alu -158 154 3 21 36 0 0 chr3 36233035 36233063 -181804095 + AT_rich Low_complexity Low_complexity 1 28 0 290 247 12 12 chr3 36234687 36234768 -181802390 - L2 LINE L2 -35 3278 3198 21 36 0 0 chr3 36234908 36234936 -181802222 + AT_rich Low_complexity Low_complexity 1 28 0 433 145 14 0 chr3 36235164 36235233 -181801925 - AluJ/FRAM SINE Alu -11 301 232 453 175 0 0 chr3 36235341 36235404 -181801754 - AluJ/FLAM SINE Alu -247 65 3 25 51 0 0 chr3 36235409 36235448 -181801710 + AT_rich Low_complexity Low_complexity 1 39 0 2293 111 0 0 chr3 36236386 36236683 -181800475 - AluSx SINE Alu -15 297 1 1398 165 173 8 chr3 36236756 36237004 -181800154 - AluSg SINE Alu -11 289 1 1669 179 0 38 chr3 36237144 36237457 -181799701 + AluJo SINE Alu 1 301 -11 821 285 162 15 chr3 36237553 36237893 -181799265 + LTR16C LTR ERVL 99 488 -3 410 236 14 25 chr3 36237899 36237915 -181799243 + MER5A DNA MER1_type 72 87 -102 1035 208 47 24 chr3 36237915 36238170 -181798988 + MIR SINE MIR 2 262 0 410 236 14 25 chr3 36238170 36238266 -181798892 + MER5A DNA MER1_type 87 189 0 416 220 44 11 chr3 36238532 36238623 -181798535 + MER5A DNA MER1_type 1 94 -95 411 245 0 32 chr3 36238653 36238747 -181798411 - MLT1F1 LTR MaLR -442 125 35 1845 216 233 51 chr3 36238750 36239531 -181797627 - L1MC4 LINE L1 -908 7134 6212 301 273 68 15 chr3 36239662 36239794 -181797364 - L1ME4a LINE L1 -17 6104 5966 284 274 0 0 chr3 36240765 36240827 -181796331 - L2 LINE L2 -10 3262 3201 2347 180 27 56 chr3 36241028 36241512 -181795646 - MER82 DNA MER2_type -22 631 162 1819 189 43 9 chr3 36241509 36241859 -181795299 + MLT1A2 LTR MaLR 6 367 -7 * 279 310 0 0 chr3 36241860 36241931 -181795227 - L2 LINE L2 -55 3258 3188 361 217 9 85 chr3 36241980 36242086 -181795072 + L1ME LINE L1 5622 5719 -443 699 206 22 15 chr3 36242105 36242241 -181794917 + FLAM_A SINE Alu 6 142 0 5914 131 37 32 chr3 36242367 36243741 -181793417 - L1MA4 LINE L1 -2 6298 4900 226 262 16 0 chr3 36243821 36243882 -181793276 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 315 49 0 0 chr3 36244676 36244717 -181792441 + (TG)n Simple_repeat Simple_repeat 2 42 0 1691 143 51 11 chr3 36244988 36245285 -181791873 - AluJb SINE Alu 0 308 1 1667 166 254 56 chr3 36245328 36245847 -181791311 + LTR29 LTR ERV1 1 622 0 1782 176 3 7 chr3 36245886 36246192 -181790966 + AluJo SINE Alu 1 305 -7 257 253 40 27 chr3 36246493 36246568 -181790590 - MIR SINE MIR -96 112 37 725 218 163 44 chr3 36246604 36246923 -181790235 - MLT1J1 LTR MaLR -13 433 104 438 326 34 7 chr3 36247568 36247715 -181789443 - MIR SINE MIR -3 259 109 600 150 7 57 chr3 36247717 36247857 -181789301 + L1MC4 LINE L1 7686 7818 -224 2328 96 0 0 chr3 36247857 36248150 -181789008 - AluSg1 SINE Alu -16 293 1 262 111 0 0 chr3 36248164 36248209 -181788949 - AluSp SINE Alu -2 301 257 1813 72 5 0 chr3 36248209 36248431 -181788727 - AluSp SINE Alu -90 223 1 559 138 0 184 chr3 36248431 36248627 -181788531 + L1MC4 LINE L1 7808 7967 -75 1859 185 25 11 chr3 36248631 36248987 -181788171 - MLT1A2 LTR MaLR -13 361 1 337 158 40 13 chr3 36248988 36249064 -181788094 + L1MC4 LINE L1 7965 8042 0 192 225 25 0 chr3 36249093 36249133 -181788025 - MIR SINE MIR -100 108 68 2059 111 36 16 chr3 36249459 36249765 -181787393 + AluSx SINE Alu 1 312 0 180 170 42 42 chr3 36249905 36250070 -181787088 + (TTATA)n Simple_repeat Simple_repeat 1 165 0 207 0 0 0 chr3 36250232 36250255 -181786903 + (A)n Simple_repeat Simple_repeat 1 23 0 2473 65 0 16 chr3 36250256 36250566 -181786592 + AluY SINE Alu 1 305 -6 1997 114 42 7 chr3 36250566 36250855 -181786303 + AluSc SINE Alu 1 299 -10 706 179 0 0 chr3 36250957 36251063 -181786095 - FRAM SINE Alu -17 159 54 242 281 158 53 chr3 36251432 36251546 -181785612 - MIR SINE MIR -63 145 20 2127 110 0 0 chr3 36251584 36251866 -181785292 - AluSg1 SINE Alu -16 293 12 572 163 96 22 chr3 36253303 36253368 -181783790 - MER69 DNA AcHobo 0 2526 2467 2100 120 3 22 chr3 36253368 36253710 -181783448 + AluSx SINE Alu 1 312 0 572 163 96 22 chr3 36253710 36253779 -181783379 - MER69 DNA AcHobo -59 2467 2382 311 217 0 0 chr3 36253932 36253992 -181783166 - MER69 DNA AcHobo -2465 61 2 1864 151 10 10 chr3 36254263 36254555 -181782603 + AluSx SINE Alu 1 292 -20 259 273 0 0 chr3 36254583 36254649 -181782509 - L1ME1 LINE L1 -50 6116 6051 22 0 0 0 chr3 36254694 36254716 -181782442 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 36254923 36254960 -181782198 + (TG)n Simple_repeat Simple_repeat 2 38 0 2482 123 25 5 chr3 36254982 36255349 -181781809 + THE1C LTR MaLR 2 375 0 871 301 15 4 chr3 36255829 36256088 -181781070 + MIR SINE MIR 1 262 0 2232 102 3 10 chr3 36256561 36256865 -181780293 + AluSx SINE Alu 1 302 -10 1140 136 27 0 chr3 36257549 36257733 -181779425 - MER57B LTR ERV1 0 434 246 568 138 50 8 chr3 36258162 36258300 -181778858 - L1MA5 LINE L1 -162 6006 5875 202 336 16 8 chr3 36258365 36258493 -181778665 + GA-rich Low_complexity Low_complexity 1 129 0 2140 131 0 16 chr3 36260565 36260877 -181776281 + AluSq SINE Alu 1 307 -6 2338 104 7 0 chr3 36260878 36261186 -181775972 + AluSq SINE Alu 1 310 -3 384 247 31 12 chr3 36261288 36261450 -181775708 + (TA)n Simple_repeat Simple_repeat 2 166 0 2069 113 51 0 chr3 36261775 36262068 -181775090 - AluSg SINE Alu -2 308 1 651 200 0 0 chr3 36262212 36262312 -181774846 - AluJ/FLAM SINE Alu -211 101 2 261 314 14 0 chr3 36262344 36262414 -181774744 + MLT1J LTR MaLR 110 180 -331 * 284 242 32 0 chr3 36262384 36262446 -181774712 + MLT1L LTR MaLR 215 278 -337 231 265 29 0 chr3 36262817 36262885 -181774273 + GA-rich Low_complexity Low_complexity 3 72 0 4247 140 13 13 chr3 36262956 36263140 -181774018 - MER41B LTR ERV1 0 635 452 2106 110 7 26 chr3 36263140 36263449 -181773709 - AluSx SINE Alu -9 303 1 4247 140 13 13 chr3 36263449 36263899 -181773259 - MER41B LTR ERV1 -182 453 1 1938 166 0 3 chr3 36264104 36264417 -181772741 + AluJb SINE Alu 1 312 0 231 285 41 32 chr3 36264721 36264844 -181772314 + LTR16A1 LTR ERVL 333 456 -1 502 156 1 0 chr3 36266082 36266172 -181770986 - L1ME2 LINE L1 -1 6169 6078 2128 110 0 7 chr3 36266174 36266456 -181770702 + AluSx SINE Alu 1 280 -32 227 31 31 0 chr3 36266460 36266492 -181770666 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 850 201 58 83 chr3 36266626 36266750 -181770408 + ORSL DNA AcHobo 1 127 -148 2384 78 0 0 chr3 36266750 36267046 -181770112 + AluY SINE Alu 3 298 -13 186 43 0 0 chr3 36267046 36267069 -181770089 + (TA)n Simple_repeat Simple_repeat 1 23 0 850 201 58 83 chr3 36267069 36267221 -181769937 + ORSL DNA AcHobo 125 271 -4 28 48 0 0 chr3 36267667 36267709 -181769449 + GC_rich Low_complexity Low_complexity 1 42 0 326 119 48 0 chr3 36267781 36267865 -181769293 + (CCG)n Simple_repeat Simple_repeat 3 90 0 628 149 43 0 chr3 36269336 36269430 -181767728 + AluS SINE Alu 2 99 -214 1635 113 34 8 chr3 36269430 36269669 -181767489 + AluSx SINE Alu 54 298 -14 1068 90 8 0 chr3 36270768 36270902 -181766256 + AluY SINE Alu 1 135 -176 321 186 60 18 chr3 36270932 36271099 -181766059 + A-rich Low_complexity Low_complexity 1 174 0 230 207 60 20 chr3 36271116 36271266 -181765892 + A-rich Low_complexity Low_complexity 1 156 0 1222 114 49 0 chr3 36271268 36271452 -181765706 + AluSc SINE Alu 115 307 -2 1834 126 59 0 chr3 36272132 36272403 -181764755 - AluSx SINE Alu -25 287 1 534 264 65 78 chr3 36273293 36273524 -181763634 + Charlie8 DNA MER1_type 4 231 -2186 1913 148 14 0 chr3 36273699 36273976 -181763182 + AluSx SINE Alu 1 281 -31 528 81 0 0 chr3 36274076 36274150 -181763008 + Alu SINE Alu 235 308 -1 36 0 0 0 chr3 36274655 36274691 -181762467 + AT_rich Low_complexity Low_complexity 1 36 0 2150 105 3 38 chr3 36275557 36275872 -181761286 - AluSx SINE Alu -8 304 1 927 262 97 57 chr3 36275908 36276306 -181760852 + L1M4 LINE L1 4067 4505 -1641 1625 186 7 0 chr3 36276306 36276613 -181760545 + AluJb SINE Alu 1 309 0 927 262 97 57 chr3 36276613 36276882 -181760276 + L1M4 LINE L1 4505 4762 -1384 2239 133 0 0 chr3 36276882 36277191 -181759967 + AluSx SINE Alu 1 309 -3 719 303 201 25 chr3 36277290 36277733 -181759425 + MLT1G1 LTR MaLR 11 531 -64 1315 144 9 18 chr3 36277778 36278007 -181759151 + AluJb SINE Alu 82 308 -4 207 0 0 0 chr3 36278010 36278033 -181759125 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 427 294 60 44 chr3 36278159 36278475 -181758683 + L1M4 LINE L1 2147 2467 -3679 265 274 75 28 chr3 36278482 36278588 -181758570 - MLT1I LTR MaLR -3 406 296 276 279 63 54 chr3 36278701 36278812 -181758346 - MLT1I LTR MaLR -286 123 12 21 0 0 0 chr3 36279072 36279093 -181758065 + AT_rich Low_complexity Low_complexity 1 21 0 1754 163 39 3 chr3 36279106 36279389 -181757769 + AluJo SINE Alu 3 295 -17 16187 169 41 21 chr3 36279574 36285582 -181751576 + L1MA1 LINE L1 11 5894 -1827 2257 105 3 3 chr3 36285582 36285886 -181751272 + AluSx SINE Alu 1 304 -8 16187 169 41 21 chr3 36285886 36286301 -181750857 + L1MA1 LINE L1 5894 6299 -1422 1969 155 3 0 chr3 36286301 36286597 -181750561 + AluSx SINE Alu 1 297 -15 16187 169 41 21 chr3 36286597 36287504 -181749654 + L1MA1 LINE L1 6299 7721 0 2825 207 38 48 chr3 36287502 36288193 -181748965 + L1ME1 LINE L1 5350 6033 -133 * 873 195 58 137 chr3 36288909 36289304 -181747854 + MLT1A2 LTR MaLR 1 364 -10 222 44 44 22 chr3 36289338 36289383 -181747775 + (TA)n Simple_repeat Simple_repeat 1 46 0 891 224 52 56 chr3 36289394 36289680 -181747478 + L1ME3A LINE L1 5860 6144 -26 323 285 70 0 chr3 36289710 36289882 -181747276 + L1MC1 LINE L1 5214 5397 -749 428 300 62 12 chr3 36289931 36290091 -181747067 + MIR SINE MIR 81 248 -14 227 258 133 39 chr3 36290143 36290271 -181746887 + L1MC1 LINE L1 5407 5546 -2262 31 82 0 0 chr3 36290337 36290410 -181746748 + AT_rich Low_complexity Low_complexity 1 73 0 1924 162 51 6 chr3 36290542 36290876 -181746282 + L1MC1 LINE L1 5985 6333 0 1083 136 0 0 chr3 36291308 36291470 -181745688 + AluSg/x SINE Alu 148 309 -3 1826 153 27 17 chr3 36291683 36291978 -181745180 + AluJo SINE Alu 2 299 -13 25 65 0 0 chr3 36292023 36292069 -181745089 + AT_rich Low_complexity Low_complexity 1 46 0 2360 89 0 10 chr3 36292128 36292442 -181744716 + AluSx SINE Alu 1 311 -1 405 327 20 20 chr3 36293477 36293627 -181743531 - L2 LINE L2 0 3272 3123 692 251 112 18 chr3 36293889 36294112 -181743046 - MIR SINE MIR -3 259 16 261 255 0 0 chr3 36294455 36294506 -181742652 + L2 LINE L2 3219 3269 -3 459 273 70 0 chr3 36294515 36294643 -181742515 - LTR16C LTR ERVL 0 491 355 1699 182 20 0 chr3 36294643 36294940 -181742218 + AluJb SINE Alu 1 303 -9 612 259 184 9 chr3 36294943 36295171 -181741987 - MER57B LTR ERV1 -165 269 2 241 246 0 31 chr3 36295357 36295422 -181741736 + GA-rich Low_complexity Low_complexity 3 65 0 2285 76 31 0 chr3 36296308 36296599 -181740559 + AluY SINE Alu 1 300 -11 486 306 126 10 chr3 36297281 36297304 -181739854 + MIR SINE MIR 1 20 -242 1797 172 47 0 chr3 36297304 36297600 -181739558 + AluJo SINE Alu 1 310 -2 486 306 126 10 chr3 36297600 36297775 -181739383 + MIR SINE MIR 20 222 -40 267 169 89 202 chr3 36298332 36298412 -181738746 + L1M4b LINE L1 11 74 -6785 1691 130 20 0 chr3 36298412 36298659 -181738499 + AluJo SINE Alu 36 287 -25 267 169 89 202 chr3 36298659 36298702 -181738456 + L1M4b LINE L1 74 120 -6739 2336 67 40 0 chr3 36298702 36299000 -181738158 + AluY SINE Alu 1 310 -1 864 226 44 67 chr3 36299017 36299287 -181737871 + L1M4b LINE L1 104 367 -6492 1973 134 0 0 chr3 36299434 36299702 -181737456 - AluSg SINE Alu -42 268 1 227 296 176 28 chr3 36300373 36300515 -181736643 + MIR3 SINE MIR 24 186 -22 321 325 172 26 chr3 36300688 36301072 -181736086 - L2 LINE L2 -468 2846 2407 554 214 0 10 chr3 36301107 36301205 -181735953 + AluSg/x SINE Alu 113 209 -103 1421 181 107 65 chr3 36301205 36301637 -181735521 + LTR7 LTR ERV1 1 450 0 2805 154 22 66 chr3 36301637 36302286 -181734872 + HERVH LTR ERV1 1 620 -7093 * 11973 111 7 29 chr3 36302274 36304131 -181733027 + HERVH LTR ERV1 756 2571 -5142 3461 102 12 6 chr3 36304119 36304618 -181732540 + HERVH LTR ERV1 5318 5819 -1894 * 2564 103 18 13 chr3 36304618 36305006 -181732152 + HERVH LTR ERV1 7324 7713 0 1284 183 109 67 chr3 36305006 36305438 -181731720 + LTR7 LTR ERV1 1 450 0 1337 160 44 0 chr3 36305438 36305663 -181731495 + AluJo SINE Alu 70 304 -8 376 298 63 121 chr3 36305792 36306221 -181730937 + MLT1K LTR MaLR 180 583 -5 411 275 63 7 chr3 36306230 36306372 -181730786 - L2 LINE L2 -898 2416 2267 542 363 50 40 chr3 36306386 36306440 -181730718 - L3 LINE CR1 -910 667 615 1820 172 0 13 chr3 36306440 36306742 -181730416 + AluJb SINE Alu 4 301 -11 542 363 50 40 chr3 36306742 36307086 -181730072 - L3 LINE CR1 -962 615 265 820 71 0 0 chr3 36307151 36307249 -181729909 + HY3 scRNA scRNA 2 99 -2 453 243 98 35 chr3 36307541 36307714 -181729444 + MIR SINE MIR 47 230 -32 189 107 0 0 chr3 36307722 36307750 -181729408 + (T)n Simple_repeat Simple_repeat 1 28 0 1523 165 0 0 chr3 36307766 36307996 -181729162 - AluJb SINE Alu -82 230 1 440 280 122 0 chr3 36308022 36308129 -181729029 + AluSq/x SINE Alu 2 121 -192 500 154 13 0 chr3 36308140 36308218 -181728940 - MER51A LTR ERV1 -87 547 469 21 36 0 0 chr3 36308225 36308253 -181728905 + AT_rich Low_complexity Low_complexity 1 28 0 2235 118 0 3 chr3 36308638 36308934 -181728224 - AluSq SINE Alu -18 295 1 891 354 9 121 chr3 36308937 36309276 -181727882 - AluSx SINE Alu -1 301 1 223 354 40 0 chr3 36309419 36309518 -181727640 + L2 LINE L2 3169 3271 -1 273 219 67 84 chr3 36309775 36309894 -181727264 + MLT1J LTR MaLR 11 127 -384 374 258 0 21 chr3 36310366 36310463 -181726695 + HERVL32 LTR ERVL 3323 3417 -1 2461 77 3 13 chr3 36310463 36310775 -181726383 + AluSp SINE Alu 1 309 -4 1833 132 108 35 chr3 36310792 36311134 -181726024 + LTR32 LTR ERVL 13 379 -92 2282 94 0 10 chr3 36311144 36311453 -181725705 + AluSx SINE Alu 1 306 -6 240 234 13 39 chr3 36311523 36311600 -181725558 + GA-rich Low_complexity Low_complexity 1 75 0 808 125 0 76 chr3 36311652 36311796 -181725362 + FLAM_C SINE Alu 11 143 0 225 119 0 0 chr3 36311987 36312029 -181725129 + (TG)n Simple_repeat Simple_repeat 2 43 0 2296 98 3 3 chr3 36312052 36312358 -181724800 + AluSq SINE Alu 1 306 -7 1227 184 55 122 chr3 36312418 36312609 -181724549 + MLT2C2 LTR ERVL 52 254 -210 2245 91 0 7 chr3 36312609 36312917 -181724241 + AluSg SINE Alu 1 306 0 1227 184 55 122 chr3 36312917 36313117 -181724041 + MLT2C2 LTR ERVL 254 415 -49 450 53 0 0 chr3 36313117 36313174 -181723984 + (CA)n Simple_repeat Simple_repeat 1 57 0 1227 184 55 122 chr3 36313174 36313216 -181723942 + MLT2C2 LTR ERVL 415 458 -6 322 245 0 0 chr3 36313224 36313277 -181723881 - MER45 DNA AcHobo -900 53 1 1174 194 76 64 chr3 36313622 36313951 -181723207 - MER46C DNA MER2_type -1 337 5 2266 114 3 0 chr3 36314456 36314764 -181722394 - AluSc SINE Alu 0 309 1 1552 180 7 20 chr3 36315330 36315625 -181721533 - AluJo SINE Alu -21 291 1 2172 112 0 3 chr3 36315728 36316024 -181721134 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 36316383 36316406 -181720752 + (GA)n Simple_repeat Simple_repeat 2 24 0 376 219 104 0 chr3 36316548 36316644 -181720514 + MER53 DNA DNA 2 107 -82 356 350 107 41 chr3 36316699 36317276 -181719882 - L2 LINE L2 -2 3270 2656 1705 249 30 40 chr3 36317467 36317961 -181719197 - LTR16C LTR ERVL -2 489 1 632 308 59 45 chr3 36317995 36318349 -181718809 - L3 LINE CR1 -72 1505 1147 224 285 198 11 chr3 36318872 36319001 -181718157 - MIR SINE MIR -60 148 33 926 289 124 36 chr3 36319007 36319220 -181717938 + MLT1K LTR MaLR 10 203 -385 180 0 0 0 chr3 36319220 36319240 -181717918 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 926 289 124 36 chr3 36319240 36319251 -181717907 + MLT1K LTR MaLR 203 212 -376 2045 124 28 0 chr3 36319251 36319533 -181717625 - AluSg SINE Alu -20 290 1 926 289 124 36 chr3 36319533 36319774 -181717384 + MLT1K LTR MaLR 212 517 -71 231 288 27 0 chr3 36319784 36319857 -181717301 + CT-rich Low_complexity Low_complexity 5 79 0 2517 174 24 9 chr3 36320040 36320460 -181716698 + MSTB LTR MaLR 1 426 0 2201 113 3 0 chr3 36320512 36320805 -181716353 - AluSg SINE Alu -16 294 1 472 271 16 39 chr3 36320814 36320943 -181716215 - MIR SINE MIR -67 141 16 320 326 65 14 chr3 36320958 36321096 -181716062 + MIR3 SINE MIR 48 192 -16 183 129 0 0 chr3 36321188 36321219 -181715939 + (CA)n Simple_repeat Simple_repeat 1 31 0 2200 109 0 10 chr3 36321671 36321964 -181715194 - AluSg1 SINE Alu -18 291 2 28 29 0 0 chr3 36321964 36321999 -181715159 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr3 36322022 36322043 -181715115 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1903 160 0 0 chr3 36322046 36322333 -181714825 - AluSx SINE Alu -25 287 1 1628 204 83 39 chr3 36322531 36322942 -181714216 - MER21A LTR ERV1 0 931 503 1243 184 18 9 chr3 36323015 36323238 -181713920 - MER21B LTR ERV1 -638 225 1 1615 153 10 37 chr3 36323751 36324045 -181713113 - AluJb SINE Alu -18 294 9 249 205 0 58 chr3 36324421 36324646 -181712512 + AluJo SINE Alu 2 291 -11 491 225 62 62 chr3 36325384 36325562 -181711596 + MIR SINE MIR 32 209 -53 181 271 0 21 chr3 36325683 36325731 -181711427 + L2 LINE L2 3209 3255 -17 2214 124 0 3 chr3 36325751 36326050 -181711108 + AluSx SINE Alu 1 298 -14 1988 121 13 20 chr3 36326079 36326377 -181710781 + AluSx SINE Alu 1 296 -16 626 68 11 0 chr3 36326493 36326581 -181710577 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 2158 110 17 3 chr3 36326692 36326983 -181710175 - AluSq SINE Alu -18 295 1 277 269 25 42 chr3 36327057 36327176 -181709982 - LTR67 LTR ERVL 0 557 441 1869 140 63 3 chr3 36327819 36328105 -181709053 - AluJb SINE Alu -9 303 1 1751 141 8 4 chr3 36328116 36328378 -181708780 - AluSx SINE Alu -17 295 33 449 129 0 0 chr3 36328378 36328440 -181708718 - AluS SINE Alu -246 67 6 423 248 35 35 chr3 36328456 36328569 -181708589 + MLT1J2 LTR MaLR 87 199 -251 2318 112 0 3 chr3 36328571 36328884 -181708274 - AluSx SINE Alu 0 312 1 1240 124 0 0 chr3 36328894 36329071 -181708087 - AluSq SINE Alu 0 313 137 2287 111 3 0 chr3 36329091 36329388 -181707770 - AluSq SINE Alu -15 298 1 367 360 37 0 chr3 36329545 36329681 -181707477 + MIR3 SINE MIR 14 154 -54 243 227 91 0 chr3 36330446 36330512 -181706646 - L2 LINE L2 -1 3312 3241 284 45 0 0 chr3 36330560 36330604 -181706554 - AluY SINE Alu 0 300 257 1232 198 78 30 chr3 36330705 36331008 -181706150 + AluJo SINE Alu 32 347 0 186 253 36 60 chr3 36331226 36331309 -181705849 + MIR3 SINE MIR 120 200 -8 1260 218 90 96 chr3 36332193 36332720 -181704438 + L1MC5 LINE L1 7174 7697 -264 297 0 0 0 chr3 36332720 36332753 -181704405 + (TA)n Simple_repeat Simple_repeat 2 34 0 1260 218 90 96 chr3 36332753 36332988 -181704170 + L1MC5 LINE L1 7697 7932 -29 279 311 104 16 chr3 36333091 36333274 -181703884 - MIR SINE MIR -57 205 7 1857 84 21 0 chr3 36333303 36333540 -181703618 + AluSx SINE Alu 5 246 -66 273 57 0 0 chr3 36333546 36333581 -181703577 + (T)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr3 36337812 36337832 -181699326 + (T)n Simple_repeat Simple_repeat 1 20 0 351 0 0 0 chr3 36342801 36342840 -181694318 + (A)n Simple_repeat Simple_repeat 1 39 0 206 205 0 0 chr3 36343883 36343922 -181693236 + (CCG)n Simple_repeat Simple_repeat 2 40 0 258 143 0 0 chr3 36344169 36344218 -181692940 + (CGG)n Simple_repeat Simple_repeat 3 51 0 285 98 0 0 chr3 36345126 36345167 -181691991 + (T)n Simple_repeat Simple_repeat 1 41 0 204 132 79 0 chr3 36347467 36347505 -181689653 + (CATTA)n Simple_repeat Simple_repeat 4 44 0 220 186 0 0 chr3 36349429 36349472 -181687686 + (CAT)n Simple_repeat Simple_repeat 3 45 0 303 261 11 11 chr3 36350405 36350497 -181686661 + MIR SINE MIR 63 154 -108 341 270 26 0 chr3 36351527 36351642 -181685516 - MIR SINE MIR -106 156 39 486 303 5 21 chr3 36351893 36352081 -181685077 - MIR SINE MIR -4 258 74 24 32 0 0 chr3 36353073 36353104 -181684054 + AT_rich Low_complexity Low_complexity 1 31 0 192 254 63 32 chr3 36354017 36354080 -181683078 - L2 LINE L2 -15 3257 3193 888 179 6 0 chr3 36354159 36354321 -181682837 + MER5B DNA MER1_type 1 163 -15 353 203 214 16 chr3 36354721 36354830 -181682328 - HsTC2 DNA Tc2 -4 1894 1808 1966 118 20 49 chr3 36354830 36355134 -181682024 - AluSx SINE Alu -17 295 1 353 203 214 16 chr3 36355134 36355206 -181681952 - HsTC2 DNA Tc2 -90 1808 1677 410 277 92 0 chr3 36355214 36355333 -181681825 - HsTC2 DNA Tc2 -1763 135 6 444 283 29 29 chr3 36355354 36355527 -181681631 - MIR SINE MIR -41 221 49 1988 243 35 10 chr3 36355884 36356402 -181680756 - L1ME3A LINE L1 -26 6144 5614 286 170 66 0 chr3 36356856 36356962 -181680196 + (TA)n Simple_repeat Simple_repeat 2 114 0 267 313 54 0 chr3 36357404 36357516 -181679642 + MLT1L LTR MaLR 368 485 -130 334 280 125 39 chr3 36357713 36357945 -181679213 - L1ME LINE L1 -387 5734 5483 304 276 129 55 chr3 36358303 36358520 -181678638 - L1ME LINE L1 -1179 4967 4735 1666 185 0 4 chr3 36358584 36358865 -181678293 - AluJb SINE Alu -32 280 1 1408 168 73 52 chr3 36358921 36359207 -181677951 + AluSg SINE Alu 1 292 -18 1790 193 11 45 chr3 36359406 36359780 -181677378 - MLT1A1 LTR MaLR -4 361 1 2352 85 20 0 chr3 36359911 36360204 -181676954 + AluSg SINE Alu 1 299 -11 272 27 27 0 chr3 36360204 36360241 -181676917 + (TA)n Simple_repeat Simple_repeat 2 39 0 1049 217 35 0 chr3 36360829 36361059 -181676099 + Charlie1 DNA MER1_type 2 239 -2522 751 187 27 0 chr3 36361033 36361183 -181675975 + Charlie1 DNA MER1_type 2608 2761 0 * 1618 165 46 11 chr3 36361264 36361549 -181675609 - AluJo SINE Alu -17 295 1 2289 89 7 14 chr3 36361631 36361924 -181675234 - AluSx SINE Alu -21 291 1 1835 113 0 4 chr3 36362695 36362942 -181674216 - AluSx SINE Alu -66 246 1 2487 71 0 0 chr3 36363393 36363704 -181673454 - AluY SINE Alu 0 311 1 366 315 0 31 chr3 36363833 36363960 -181673198 + L2 LINE L2 3191 3313 0 310 85 21 0 chr3 36364281 36364328 -181672830 - MLT2C2 LTR ERVL 0 464 417 249 299 13 0 chr3 36364674 36364751 -181672407 - L2 LINE L2 -6 3266 3189 1273 253 14 0 chr3 36365078 36365195 -181671963 + AluJo SINE Alu 1 115 -197 186 43 0 0 chr3 36365195 36365218 -181671940 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1273 253 14 0 chr3 36365218 36365377 -181671781 + AluJo SINE Alu 115 281 -31 2337 92 3 0 chr3 36365497 36365789 -181671369 - AluSp SINE Alu -20 293 1 1821 130 0 48 chr3 36366203 36366518 -181670640 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr3 36366613 36366637 -181670521 + AT_rich Low_complexity Low_complexity 1 24 0 265 182 136 0 chr3 36366918 36366984 -181670174 - L1ME LINE L1 -1454 4692 4618 226 192 0 39 chr3 36367123 36367175 -181669983 - L1ME LINE L1 -1519 4627 4578 2065 128 7 10 chr3 36367485 36367782 -181669376 - AluSx SINE Alu -16 296 1 638 340 85 12 chr3 36367800 36368363 -181668795 - L2 LINE L2 0 3313 2706 3523 32 0 0 chr3 36368363 36368769 -181668389 + L1PA3 LINE L1 5747 6152 -3 296 351 72 14 chr3 36368838 36369060 -181668098 - L2 LINE L2 -596 2718 2484 239 174 110 64 chr3 36370012 36370121 -181667037 - L1ME LINE L1 -703 5463 5350 2432 71 0 46 chr3 36370139 36370464 -181666694 + AluSg SINE Alu 1 310 0 24 0 0 0 chr3 36370507 36370531 -181666627 + AT_rich Low_complexity Low_complexity 1 24 0 1260 122 0 6 chr3 36370703 36370883 -181666275 + AluSc SINE Alu 118 296 -13 345 167 0 15 chr3 36370883 36370949 -181666209 + MLT1A1 LTR MaLR 301 365 0 1747 189 79 0 chr3 36371029 36371420 -181665738 + L1MC3 LINE L1 7364 7785 0 1078 245 81 81 chr3 36371927 36371957 -181665201 + MLT1H1 LTR MaLR 32 61 -494 1640 174 40 23 chr3 36371957 36372256 -181664902 + AluJo SINE Alu 1 304 -8 1078 245 81 81 chr3 36372256 36372747 -181664411 + MLT1H1 LTR MaLR 60 553 -2 23 0 0 0 chr3 36373091 36373114 -181664044 + AT_rich Low_complexity Low_complexity 1 23 0 314 205 13 0 chr3 36373163 36373241 -181663917 + GA-rich Low_complexity Low_complexity 2 80 0 668 303 25 25 chr3 36373327 36373565 -181663593 - MIR SINE MIR -13 249 12 203 0 0 36 chr3 36373615 36373643 -181663515 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 264 248 201 20 chr3 36373904 36374053 -181663105 + MIR SINE MIR 60 235 -27 234 313 52 10 chr3 36374063 36374159 -181662999 + MIR SINE MIR 8 107 -155 1114 211 87 13 chr3 36374347 36374646 -181662512 - L1ME1 LINE L1 0 6166 5846 332 276 105 0 chr3 36375580 36375685 -181661473 - L2 LINE L2 -1 3312 3197 258 254 0 0 chr3 36377365 36377420 -181659738 - L2 LINE L2 -7 3306 3252 258 330 11 11 chr3 36377721 36377815 -181659343 - MIR SINE MIR -110 152 59 220 281 79 53 chr3 36377994 36378108 -181659050 + MIR SINE MIR 56 172 -90 1472 190 7 31 chr3 36378354 36378671 -181658487 + AluJb SINE Alu 1 310 0 1991 112 52 3 chr3 36378789 36379075 -181658083 + AluSq SINE Alu 1 300 -13 2351 180 0 2 chr3 36379470 36379870 -181657288 - L1MB3 LINE L1 -11 6172 5774 2542 244 26 10 chr3 36379870 36380496 -181656662 + L1ME3A LINE L1 5507 6142 -28 1210 86 0 0 chr3 36380536 36380722 -181656436 + AluSc SINE Alu 133 318 0 1972 134 0 3 chr3 36380735 36381039 -181656119 + AluSx SINE Alu 1 303 0 1577 175 4 26 chr3 36381370 36381638 -181655520 + AluJo SINE Alu 2 263 -49 24 0 0 0 chr3 36381653 36381677 -181655481 + AT_rich Low_complexity Low_complexity 1 24 0 337 341 131 28 chr3 36381724 36381900 -181655258 - MIR3 SINE MIR -7 201 8 1846 203 157 13 chr3 36381984 36382437 -181654721 + MLT1H LTR MaLR 30 547 -2 191 294 75 81 chr3 36383446 36383606 -181653552 - L2 LINE L2 -1 3312 3154 2030 152 7 0 chr3 36383653 36383963 -181653195 - AluSx SINE Alu 0 312 1 13652 143 24 6 chr3 36384241 36386374 -181650784 + Tigger7 DNA MER2_type 2 2173 -314 903 179 19 0 chr3 36386374 36386530 -181650628 - FRAM SINE Alu -17 159 1 387 0 0 0 chr3 36386630 36386673 -181650485 + (A)n Simple_repeat Simple_repeat 1 43 0 680 179 173 0 chr3 36387695 36387863 -181649295 + MIR SINE MIR 58 254 -8 1277 280 103 0 chr3 36388400 36388807 -181648351 - LTR16C LTR ERVL 0 491 43 294 153 0 69 chr3 36388895 36388967 -181648191 - L1ME4a LINE L1 -105 6016 5950 2023 154 0 10 chr3 36389568 36389879 -181647279 + AluJb SINE Alu 1 308 -4 2633 207 39 25 chr3 36390091 36390725 -181646433 + L1MC4 LINE L1 7228 7870 -172 386 250 93 43 chr3 36390886 36391026 -181646132 + L1ME4a LINE L1 5946 6092 -29 786 108 0 0 chr3 36391210 36391312 -181645846 - AluY SINE Alu -16 295 194 4237 270 101 32 chr3 36391374 36391512 -181645646 + HAL1 LINE L1 230 357 -2150 2015 125 54 65 chr3 36391512 36391880 -181645278 - THE1B LTR MaLR 0 364 1 4237 270 101 32 chr3 36391880 36392589 -181644569 + HAL1 LINE L1 357 1016 -1491 2804 26 0 0 chr3 36392589 36392900 -181644258 + AluYb8 SINE Alu 1 311 -7 4237 270 101 32 chr3 36392900 36393852 -181643306 + HAL1 LINE L1 1016 2166 -341 2265 108 0 10 chr3 36393852 36394166 -181642992 + AluSx SINE Alu 1 311 -1 4237 270 101 32 chr3 36394166 36394237 -181642921 + HAL1 LINE L1 2166 2231 -276 691 147 0 0 chr3 36394293 36394395 -181642763 + AluSg/x SINE Alu 199 300 -10 261 0 0 0 chr3 36394531 36394560 -181642598 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 2987 71 3 3 chr3 36394560 36394928 -181642230 - L1PA7 LINE L1 -17 6137 5770 535 275 81 40 chr3 36394938 36395285 -181641873 + MLT1L LTR MaLR 144 536 -79 1487 220 20 43 chr3 36395662 36396012 -181641146 + MLT1A1 LTR MaLR 1 342 -23 780 179 8 0 chr3 36396020 36396143 -181641015 - AluJb SINE Alu -187 125 2 304 211 0 0 chr3 36396146 36396198 -181640960 + MLT1A1 LTR MaLR 323 374 0 232 133 33 0 chr3 36396861 36396921 -181640237 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 225 242 48 0 chr3 36397100 36397162 -181639996 + MLT1L LTR MaLR 549 613 -2 996 172 0 0 chr3 36398307 36398464 -181638694 + FRAM SINE Alu 8 164 -12 444 308 27 36 chr3 36398579 36398800 -181638358 + L2 LINE L2 2588 2806 -508 2005 201 80 30 chr3 36398913 36399350 -181637808 + MLT1C LTR MaLR 7 465 -2 289 297 201 10 chr3 36399354 36399563 -181637595 + L2 LINE L2 2976 3224 -48 191 250 125 0 chr3 36399751 36399807 -181637351 - MIR3 SINE MIR -31 177 115 1095 83 0 0 chr3 36401302 36401434 -181635724 + AluSp SINE Alu 1 132 -181 2252 122 0 0 chr3 36401436 36401739 -181635419 + AluSx SINE Alu 1 303 -9 1846 110 21 11 chr3 36401902 36402226 -181634932 + AluSp SINE Alu 1 327 0 563 279 118 27 chr3 36402497 36402759 -181634399 - LTR50 LTR ERVL 0 795 510 565 241 74 42 chr3 36402774 36402990 -181634168 - LTR50 LTR ERVL -569 226 4 822 262 53 17 chr3 36403016 36403351 -181633807 - MLT1I LTR MaLR -9 400 18 233 294 28 64 chr3 36403832 36403941 -181633217 + L2 LINE L2 3197 3301 -12 2009 163 0 3 chr3 36404489 36404795 -181632363 - AluJb SINE Alu -7 305 1 400 302 99 6 chr3 36405050 36405232 -181631926 - L1MC4a LINE L1 -1925 5883 5685 198 0 0 0 chr3 36405675 36405697 -181631461 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2064 137 0 13 chr3 36405789 36406096 -181631062 - AluSx SINE Alu -9 303 1 1790 164 3 3 chr3 36406564 36406906 -181630252 - AluJb SINE Alu 0 342 1 24 0 0 0 chr3 36406915 36406939 -181630219 + AT_rich Low_complexity Low_complexity 1 24 0 335 281 111 20 chr3 36407288 36407441 -181629717 - MIR SINE MIR -93 169 3 306 0 0 0 chr3 36408754 36408788 -181628370 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2154 128 0 7 chr3 36408967 36409272 -181627886 - AluSx SINE Alu -9 303 1 1851 179 3 6 chr3 36410489 36410802 -181626356 - AluJo SINE Alu 0 312 1 273 29 0 0 chr3 36410857 36410891 -181626267 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6687 31 0 0 chr3 36410891 36411623 -181625535 - L1PA3 LINE L1 -18 6137 5406 511 250 111 14 chr3 36411763 36411907 -181625251 - MER115 DNA AcHobo -485 208 51 183 200 0 0 chr3 36411907 36411947 -181625211 - MER5C DNA MER1_type -1 323 284 417 287 0 39 chr3 36412036 36412165 -181624993 - MER5C DNA MER1_type -200 124 1 626 304 51 26 chr3 36412410 36412567 -181624591 - Tigger8 DNA MER2_type -66 600 449 2423 87 6 0 chr3 36412567 36412878 -181624280 + AluSp SINE Alu 1 313 0 626 304 51 26 chr3 36412878 36413032 -181624126 - Tigger8 DNA MER2_type -217 449 281 383 145 12 0 chr3 36413122 36413205 -181623953 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 1438 267 56 3 chr3 36414249 36414608 -181622550 + LTR16C LTR ERVL 114 491 0 2370 112 0 0 chr3 36414654 36414966 -181622192 + AluSx SINE Alu 1 312 0 863 255 110 83 chr3 36415067 36415503 -181621655 - MLT1J2 LTR MaLR 0 450 3 38 61 0 0 chr3 36415550 36415616 -181621542 + AT_rich Low_complexity Low_complexity 1 66 0 421 231 39 10 chr3 36415616 36415720 -181621438 + L2 LINE L2 3163 3269 -3 1259 279 88 9 chr3 36416164 36416583 -181620575 - L1ME3A LINE L1 -5 6165 5714 1613 188 3 11 chr3 36416746 36417028 -181620130 + AluJb SINE Alu 3 282 -30 333 118 0 0 chr3 36417032 36417083 -181620075 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 897 271 62 60 chr3 36417122 36417587 -181619571 - MLT1H LTR MaLR -7 542 77 897 280 102 18 chr3 36418544 36418819 -181618339 + LTR16C LTR ERVL 77 374 -117 2241 217 62 2 chr3 36418859 36419357 -181617801 - MER74A LTR ERVL -30 528 1 408 219 38 19 chr3 36419361 36419466 -181617692 + LTR16C LTR ERVL 381 487 -4 270 329 0 0 chr3 36419675 36419754 -181617404 - MER63 DNA MER1_type -5 1055 977 577 156 138 0 chr3 36419756 36419865 -181617293 - MER63 DNA MER1_type -312 750 1 243 340 93 47 chr3 36419901 36420051 -181617107 - MIR3 SINE MIR -11 197 41 2298 111 0 3 chr3 36420914 36421221 -181615937 - AluSq SINE Alu -2 311 6 278 224 0 0 chr3 36421264 36421322 -181615836 + MLT1A1 LTR MaLR 1 58 -307 1468 176 0 30 chr3 36421460 36421727 -181615431 - AluJb SINE Alu -53 259 1 1892 106 92 13 chr3 36421727 36422030 -181615128 + Tigger7 DNA MER2_type 2161 2487 0 1650 191 35 60 chr3 36422049 36422500 -181614658 - LTR56 LTR ERV1 0 445 6 204 135 0 0 chr3 36423328 36423365 -181613793 + (TGG)n Simple_repeat Simple_repeat 2 38 0 2087 122 34 0 chr3 36423643 36423938 -181613220 + AluSx SINE Alu 1 305 -7 908 209 33 19 chr3 36424684 36424895 -181612263 - MER20 DNA MER1_type -5 214 1 2165 113 7 7 chr3 36424999 36425300 -181611858 - AluSp SINE Alu -1 312 12 230 338 86 13 chr3 36426212 36426363 -181610795 + MER5B DNA MER1_type 1 162 -16 574 267 41 0 chr3 36426422 36426594 -181610564 - MIR SINE MIR -16 246 68 909 256 65 31 chr3 36428023 36428259 -181608899 - MER102b DNA MER1_type -1096 332 81 1408 180 113 11 chr3 36428259 36428423 -181608735 - AluJo SINE Alu 0 312 166 360 0 0 0 chr3 36428423 36428463 -181608695 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1408 180 113 11 chr3 36428463 36428581 -181608577 - AluJo SINE Alu -146 166 1 909 256 65 31 chr3 36428581 36428665 -181608493 - MER102b DNA MER1_type -1347 81 1 2014 123 3 3 chr3 36428681 36428966 -181608192 - AluSx SINE Alu -20 292 8 552 341 19 0 chr3 36429246 36429451 -181607707 - MIR SINE MIR -26 236 28 2278 108 0 0 chr3 36429494 36429789 -181607369 + AluSc SINE Alu 1 295 -14 1557 183 60 7 chr3 36429996 36430281 -181606877 + AluJo SINE Alu 1 300 -12 775 186 21 0 chr3 36431085 36431225 -181605933 + AluJo SINE Alu 40 182 -130 5926 42 16 0 chr3 36432127 36432881 -181604277 - L1PA5 LINE L1 -7 6147 5382 517 256 0 30 chr3 36433144 36433277 -181603881 + L2 LINE L2 3185 3313 0 523 291 18 9 chr3 36433737 36433900 -181603258 - MIR SINE MIR -46 162 3 21 57 0 0 chr3 36435678 36435713 -181601445 + AT_rich Low_complexity Low_complexity 1 35 0 572 329 70 3 chr3 36435933 36436231 -181600927 + L2 LINE L2 2284 2601 -713 2129 113 40 0 chr3 36437288 36437588 -181599570 + AluSp SINE Alu 2 313 0 225 183 84 84 chr3 36437688 36437759 -181599399 - L3 LINE CR1 -257 1320 1250 256 79 0 0 chr3 36439035 36439073 -181598085 + L1ME4a LINE L1 5971 6008 -113 216 67 0 0 chr3 36439102 36439132 -181598026 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 443 73 29 0 chr3 36439186 36439254 -181597904 - L1PB4 LINE L1 -3 6153 6084 236 165 76 13 chr3 36439268 36439347 -181597811 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 36 70 0 0 chr3 36440375 36440446 -181596712 + AT_rich Low_complexity Low_complexity 1 71 0 1850 111 55 4 chr3 36440454 36440725 -181596433 - AluSg SINE Alu -25 285 1 2128 67 41 0 chr3 36440728 36441040 -181596118 - AluY SINE Alu 0 323 1 39936 43 26 2 chr3 36441050 36447050 -181590108 - L1PA7 LINE L1 -5 6149 2 234 0 0 0 chr3 36447339 36447365 -181589793 + (T)n Simple_repeat Simple_repeat 1 26 0 730 120 0 0 chr3 36447762 36447879 -181589279 + (CA)n Simple_repeat Simple_repeat 1 117 0 580 300 92 4 chr3 36448307 36448547 -181588611 - MIR SINE MIR 0 262 2 202 211 0 0 chr3 36448752 36448790 -181588368 + (CAATT)n Simple_repeat Simple_repeat 5 42 0 608 285 186 16 chr3 36449401 36449783 -181587375 + LTR16A LTR ERVL 2 448 -2 323 322 49 35 chr3 36449793 36449936 -181587222 - MIR3 SINE MIR -59 149 5 376 306 72 17 chr3 36450188 36450368 -181586790 + L2 LINE L2 3124 3313 0 293 312 33 33 chr3 36451249 36451409 -181585749 + MIR SINE MIR 31 192 -63 1552 163 222 28 chr3 36451481 36451940 -181585218 + LTR10A LTR ERV1 1 548 -61 1459 269 22 59 chr3 36451968 36452478 -181584680 + LTR16C LTR ERVL 1 491 0 261 0 0 0 chr3 36452660 36452703 -181584455 + (CA)n Simple_repeat Simple_repeat 1 72 0 261 0 0 0 chr3 36452703 36452732 -181584426 + (CA)n Simple_repeat Simple_repeat 1 29 0 2390 97 6 0 chr3 36453096 36453407 -181583751 - AluSp SINE Alu 0 313 1 278 356 14 68 chr3 36453641 36453860 -181583298 - MIR SINE MIR -48 214 8 325 280 30 20 chr3 36454486 36454586 -181582572 - L2 LINE L2 -2 3311 3211 310 242 44 21 chr3 36454648 36454817 -181582341 - LTR33A LTR ERVL 0 523 380 738 306 160 22 chr3 36455233 36455904 -181581254 - L2 LINE L2 -215 3057 2298 322 252 10 29 chr3 36456101 36456204 -181580954 + CT-rich Low_complexity Low_complexity 2 102 0 1160 238 75 4 chr3 36456833 36457114 -181580044 - MLT1G1 LTR MaLR -294 301 1 6144 95 6 3 chr3 36457225 36458682 -181578476 - L1PA12 LINE L1 -1 6167 4713 2088 202 37 55 chr3 36459539 36460103 -181577055 - MLT2B3 LTR ERVL 0 554 1 303 284 85 34 chr3 36460227 36460403 -181576755 + L2 LINE L2 3127 3311 -2 259 191 64 11 chr3 36460674 36460768 -181576390 + L1ME4a LINE L1 6023 6121 0 1635 185 24 0 chr3 36460821 36461108 -181576050 - AluJo SINE Alu -16 296 3 802 148 0 63 chr3 36461335 36461477 -181575681 - FLAM_C SINE Alu 0 133 1 25 0 0 0 chr3 36461673 36461698 -181575460 + AT_rich Low_complexity Low_complexity 1 25 0 35 41 0 0 chr3 36462229 36462278 -181574880 + AT_rich Low_complexity Low_complexity 1 49 0 319 305 79 38 chr3 36462380 36462893 -181574265 - L1ME4a LINE L1 -21 6100 5365 1039 278 94 59 chr3 36463052 36463587 -181573571 - L2 LINE L2 -2 3311 2759 199 242 32 16 chr3 36463590 36463652 -181573506 - L2 LINE L2 -661 2653 2591 367 333 101 0 chr3 36464288 36464426 -181572732 + L2 LINE L2 3162 3313 0 995 285 97 8 chr3 36464632 36464993 -181572165 + LTR16C LTR ERVL 99 491 0 251 256 39 26 chr3 36465021 36465099 -181572059 + MIR SINE MIR 165 243 -19 275 346 0 0 chr3 36465910 36465988 -181571170 + L2 LINE L2 3186 3263 -9 296 54 0 0 chr3 36466078 36466115 -181571043 + U2 snRNA snRNA 1 37 -151 186 303 15 15 chr3 36466303 36466369 -181570789 - L2 LINE L2 -3054 260 195 967 57 0 0 chr3 36466778 36466902 -181570256 - L1PB2 LINE L1 -2 6149 6026 379 282 38 0 chr3 36467046 36467177 -181569981 + MIR3 SINE MIR 65 200 -8 342 288 23 23 chr3 36467443 36467575 -181569583 - L1ME4a LINE L1 -1054 5092 4961 281 291 34 34 chr3 36467908 36468056 -181569102 - L1MC/D LINE L1 -2038 5770 5623 795 272 109 27 chr3 36468350 36468681 -181568477 + MLT1J2 LTR MaLR 93 450 0 2608 62 0 0 chr3 36468715 36469021 -181568137 - AluY SINE Alu -5 306 1 306 260 67 29 chr3 36469065 36469169 -181567989 - HAL1b LINE L1 -463 885 778 235 282 88 54 chr3 36469251 36469545 -181567613 - HAL1b LINE L1 -443 905 602 1975 151 24 0 chr3 36469697 36469989 -181567169 + AluJb SINE Alu 4 302 -10 1019 147 0 89 chr3 36470263 36470487 -181566671 - MER2 DNA MER2_type -135 210 7 1626 174 20 30 chr3 36470691 36470989 -181566169 + AluJo SINE Alu 1 295 -17 706 150 8 8 chr3 36472192 36472334 -181564824 + AluJb SINE Alu 173 312 0 289 305 89 28 chr3 36472932 36473105 -181564053 - MIR3 SINE MIR -43 165 6 28 44 0 44 chr3 36473106 36473174 -181563984 + AT_rich Low_complexity Low_complexity 1 65 0 237 268 42 0 chr3 36473293 36473364 -181563794 - MIR SINE MIR -98 164 91 7527 118 158 17 chr3 36474783 36475738 -181561420 - THE1C-int LTR MaLR 0 1580 367 2394 99 0 6 chr3 36475738 36476051 -181561107 - AluY SINE Alu 0 311 1 7527 118 158 17 chr3 36476051 36476479 -181560679 - THE1C-int LTR MaLR -1213 367 1 1438 152 77 88 chr3 36476482 36476858 -181560300 - THE1C LTR MaLR -3 372 1 16014 139 15 6 chr3 36476864 36477554 -181559604 + L1PA11 LINE L1 1644 2326 -3848 1950 139 0 4 chr3 36477554 36477828 -181559330 + AluSx SINE Alu 1 273 -39 228 35 0 0 chr3 36477835 36477864 -181559294 + (CA)n Simple_repeat Simple_repeat 2 30 0 16014 139 15 6 chr3 36477864 36478608 -181558550 + L1PA11 LINE L1 2331 3066 -3108 219 36 0 0 chr3 36478608 36478636 -181558522 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 16014 139 15 6 chr3 36478636 36481312 -181555846 + L1PA11 LINE L1 3066 5795 -379 240 111 0 0 chr3 36481312 36481348 -181555810 + (TA)n Simple_repeat Simple_repeat 2 37 0 16014 139 15 6 chr3 36481348 36481726 -181555432 + L1PA11 LINE L1 5795 6168 -6 632 270 93 31 chr3 36481788 36482014 -181555144 + MIR SINE MIR 23 262 0 180 77 0 0 chr3 36482290 36482316 -181554842 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1519 178 11 21 chr3 36482318 36482599 -181554559 - AluJo SINE Alu -30 282 5 271 77 26 0 chr3 36482758 36482797 -181554361 + MLT1I LTR MaLR 101 140 -269 295 302 164 22 chr3 36483457 36483684 -181553474 - MIR SINE MIR -3 259 3 26 50 0 0 chr3 36483795 36483835 -181553323 + AT_rich Low_complexity Low_complexity 1 40 0 810 200 45 50 chr3 36484276 36484496 -181552662 - MER20 DNA MER1_type 0 219 1 962 176 0 0 chr3 36484547 36484700 -181552458 - FRAM SINE Alu -25 151 1 451 269 107 13 chr3 36485129 36485278 -181551880 - MIR SINE MIR -90 172 10 4485 169 54 35 chr3 36485927 36487209 -181549949 - L1MA8 LINE L1 -11 7240 5936 8490 227 70 33 chr3 36487337 36489151 -181548007 - L1MA8 LINE L1 -1775 5331 3585 1756 202 9 6 chr3 36489151 36489492 -181547666 - MER2 DNA MER2_type 0 344 3 8490 227 70 33 chr3 36489492 36491634 -181545524 - L1MA8 LINE L1 -3521 3585 1525 544 351 134 40 chr3 36491824 36492477 -181544681 - L2 LINE L2 0 3272 2526 390 287 70 0 chr3 36492586 36492701 -181544457 - MIR3 SINE MIR -39 169 47 208 237 0 0 chr3 36493126 36493185 -181543973 + A-rich Low_complexity Low_complexity 1 59 0 458 155 0 107 chr3 36493531 36493634 -181543524 + MER21B LTR ERV1 1 92 -771 760 216 49 6 chr3 36493688 36493850 -181543308 + MER21B LTR ERV1 100 268 -595 1232 57 131 11 chr3 36493854 36493884 -181543274 - MER107 DNA MER1_type 0 197 172 182 36 0 36 chr3 36493884 36493912 -181543246 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1232 57 131 11 chr3 36493912 36494057 -181543101 - MER107 DNA MER1_type -25 172 1 * 1706 233 87 39 chr3 36494057 36494570 -181542588 + MER21B LTR ERV1 275 812 -51 2010 149 0 0 chr3 36494991 36495311 -181541847 + AluSx SINE Alu 1 320 0 277 301 73 24 chr3 36495657 36495780 -181541378 + MER5B DNA MER1_type 2 130 -48 222 44 44 22 chr3 36495788 36495833 -181541325 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2074 116 0 0 chr3 36495836 36496113 -181541045 - AluSc SINE Alu -32 277 1 207 214 24 0 chr3 36496114 36496156 -181541002 + MER5B DNA MER1_type 116 158 -20 274 200 0 0 chr3 36497559 36497604 -181539554 + MLT1J LTR MaLR 1 45 -466 978 259 17 9 chr3 36497616 36497848 -181539310 + Tigger7 DNA MER2_type 1 234 -2253 455 181 24 24 chr3 36497869 36497952 -181539206 + Tigger7 DNA MER2_type 2409 2491 0 659 240 76 49 chr3 36498017 36498468 -181538690 - LTR48B LTR ERV1 -11 776 128 3848 117 42 8 chr3 36498468 36499082 -181538076 - MER41B LTR ERV1 0 635 1 403 253 0 0 chr3 36499086 36499173 -181537985 - MER34 LTR ERV1 -454 88 2 229 257 68 27 chr3 36499190 36499264 -181537894 - MLT1K LTR MaLR -324 264 188 295 264 114 48 chr3 36499871 36500144 -181537014 + HAL1 LINE L1 2211 2501 -6 1510 268 90 29 chr3 36500222 36500287 -181536871 - HAL1 LINE L1 -710 1797 1737 2194 111 0 10 chr3 36500287 36500594 -181536564 - AluSx SINE Alu -8 304 1 1510 268 90 29 chr3 36500594 36501281 -181535877 - HAL1 LINE L1 -770 1737 999 1311 190 97 0 chr3 36501281 36501528 -181535630 - AluJo SINE Alu -39 273 3 287 253 0 13 chr3 36501582 36501657 -181535501 - HAL1 LINE L1 -2296 211 138 1981 159 83 10 chr3 36501843 36502459 -181534699 + MER39 LTR ERV1 1 705 -2 226 277 36 27 chr3 36502751 36502863 -181534295 + MIR SINE MIR 117 229 -33 409 138 130 29 chr3 36504017 36504155 -181533003 + MER53 DNA DNA 1 152 -37 231 57 0 0 chr3 36504156 36504191 -181532967 + MER53 DNA DNA 105 139 -50 316 299 104 6 chr3 36504524 36504688 -181532470 - L1ME2 LINE L1 -258 5906 5727 272 109 0 18 chr3 36505465 36505520 -181531638 + (TA)n Simple_repeat Simple_repeat 2 55 0 303 237 11 43 chr3 36505527 36505620 -181531538 + L1MC4 LINE L1 6614 6703 -1339 339 144 31 0 chr3 36505627 36505724 -181531434 + (TA)n Simple_repeat Simple_repeat 2 101 0 325 221 0 53 chr3 36505731 36505826 -181531332 + L1MC4 LINE L1 6614 6703 -1339 185 239 0 11 chr3 36505831 36505923 -181531235 + (TA)n Simple_repeat Simple_repeat 1 91 0 567 144 23 11 chr3 36506041 36506215 -181530943 + (TA)n Simple_repeat Simple_repeat 2 177 0 310 256 11 11 chr3 36506222 36506312 -181530846 + L1MC4 LINE L1 6614 6703 -1339 213 152 13 25 chr3 36506315 36506394 -181530764 + (TA)n Simple_repeat Simple_repeat 2 79 0 483 210 54 30 chr3 36506397 36506564 -181530594 + L1ME4a LINE L1 5935 6105 -16 200 33 0 33 chr3 36507074 36507104 -181530054 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 542 180 63 116 chr3 36508344 36508533 -181528625 - MER20 DNA MER1_type 0 219 41 260 227 206 10 chr3 36508557 36508654 -181528504 - MIR SINE MIR -7 255 140 * 308 260 39 39 chr3 36508640 36508744 -181528414 + L2 LINE L2 3133 3236 -36 1963 253 157 1 chr3 36508813 36509542 -181527616 + L2 LINE L2 2460 3306 -7 251 333 30 77 chr3 36509624 36509792 -181527366 + MER5B DNA MER1_type 1 160 -18 2130 123 3 7 chr3 36509969 36510279 -181526879 - AluSx SINE Alu -3 309 1 629 266 125 0 chr3 36510359 36510543 -181526615 + MIR SINE MIR 56 262 0 223 340 66 28 chr3 36510559 36510665 -181526493 + MER5B DNA MER1_type 60 169 -9 200 263 40 40 chr3 36510809 36510885 -181526273 - MIR3 SINE MIR -17 191 116 315 262 19 48 chr3 36510960 36511063 -181526095 + MER5A DNA MER1_type 14 113 -76 445 271 10 0 chr3 36511073 36511169 -181525989 - MER5B DNA MER1_type -3 175 79 214 264 85 47 chr3 36511577 36511683 -181525475 + MIR SINE MIR 107 216 -46 513 311 85 1 chr3 36511736 36511959 -181525199 - MIR SINE MIR -14 248 7 33 25 0 0 chr3 36511989 36512029 -181525129 + AT_rich Low_complexity Low_complexity 1 40 0 291 191 0 0 chr3 36512419 36512482 -181524676 + CT-rich Low_complexity Low_complexity 2 64 0 606 247 29 12 chr3 36512560 36512730 -181524428 - MER5B DNA MER1_type -3 175 3 201 369 162 0 chr3 36513077 36513188 -181523970 + MIR SINE MIR 19 147 -61 456 291 80 6 chr3 36513335 36513510 -181523648 - MER5A DNA MER1_type -1 188 1 4508 245 30 34 chr3 36513871 36516947 -181520211 + L1M4 LINE L1 816 3990 -2654 3331 172 23 23 chr3 36516927 36517148 -181520010 + L1MB5 LINE L1 5510 5730 -444 * 2718 76 3 0 chr3 36517148 36517502 -181519656 - THE1A LTR MaLR 0 355 1 3331 172 23 23 chr3 36517502 36517932 -181519226 + L1MB5 LINE L1 5729 6161 -13 356 251 94 69 chr3 36517951 36518270 -181518888 - L1MC4a LINE L1 -1693 6115 5789 308 202 10 101 chr3 36519217 36519316 -181517842 + L2 LINE L2 3223 3312 -1 257 127 18 0 chr3 36519354 36519410 -181517748 - MLT2C1 LTR ERVL 0 514 357 1565 188 41 16 chr3 36519459 36519779 -181517379 - MLT2C1 LTR ERVL -62 335 8 2224 104 0 10 chr3 36519782 36520079 -181517079 + AluSx SINE Alu 1 294 -18 274 286 0 0 chr3 36520903 36520966 -181516192 - L2 LINE L2 -2 3311 3249 418 325 58 19 chr3 36521920 36522074 -181515084 - MIR SINE MIR -45 217 58 234 0 0 0 chr3 36522940 36522966 -181514192 + (TA)n Simple_repeat Simple_repeat 2 27 0 2283 101 0 0 chr3 36522966 36523264 -181513894 - AluSx SINE Alu -14 298 1 367 297 47 31 chr3 36523740 36523868 -181513290 + L2 LINE L2 3143 3272 0 334 318 12 0 chr3 36523881 36523966 -181513192 + L2 LINE L2 3210 3295 -18 2470 71 3 7 chr3 36524138 36524448 -181512710 - AluSg SINE Alu -1 309 1 227 245 49 20 chr3 36525631 36525733 -181511425 + L1ME4a LINE L1 6011 6115 -6 244 305 48 9 chr3 36525803 36525908 -181511250 - MIR3 SINE MIR -7 201 93 2026 138 12 6 chr3 36526413 36526739 -181510419 - MER2 DNA MER2_type -3 342 15 270 277 59 0 chr3 36526743 36526844 -181510314 - MIR SINE MIR -84 178 72 2088 100 21 0 chr3 36527055 36527345 -181509813 + AluSx SINE Alu 3 298 -14 1508 204 72 49 chr3 36527367 36527755 -181509403 + LTR16A1 LTR ERVL 19 415 -42 664 178 40 35 chr3 36527776 36527950 -181509208 + MER53 DNA DNA 15 189 0 274 196 0 0 chr3 36527956 36528002 -181509156 + LTR16A1 LTR ERVL 412 457 0 1021 256 5 0 chr3 36528489 36528712 -181508446 - MER58A DNA MER1_type 0 224 1 250 188 30 20 chr3 36528992 36529093 -181508065 + (TTA)n Simple_repeat Simple_repeat 2 103 0 2093 140 0 3 chr3 36529250 36529564 -181507594 + AluSq SINE Alu 1 313 0 895 226 83 0 chr3 36530495 36530699 -181506459 - MER58A DNA MER1_type -3 221 1 325 315 14 41 chr3 36530842 36530988 -181506170 + MLT1K LTR MaLR 126 267 -321 275 284 9 28 chr3 36531494 36531603 -181505555 + MLT1K LTR MaLR 400 506 -82 383 200 0 0 chr3 36532700 36532780 -181504378 + MER116 DNA Mariner 1 80 0 238 281 208 73 chr3 36533082 36533260 -181503898 + MIR SINE MIR 56 257 -5 201 121 0 0 chr3 36533272 36533305 -181503853 + (TTA)n Simple_repeat Simple_repeat 1 33 0 522 306 121 10 chr3 36533410 36533609 -181503549 + MIR SINE MIR 20 240 -22 654 242 126 61 chr3 36533801 36534127 -181503031 - L2 LINE L2 0 3313 2967 742 241 16 16 chr3 36534534 36534721 -181502437 - MIR SINE MIR -24 238 52 651 242 8 0 chr3 36534745 36534873 -181502285 - MER5A DNA MER1_type 0 189 61 309 135 0 0 chr3 36534892 36534944 -181502214 - MER41B LTR ERV1 -87 548 497 1221 134 19 29 chr3 36534945 36535154 -181502004 + AluSx SINE Alu 1 207 -105 647 231 61 79 chr3 36535573 36535682 -181501476 + MLT1H LTR MaLR 58 167 -382 2170 114 6 28 chr3 36535682 36535999 -181501159 + AluSq SINE Alu 1 310 -3 647 231 61 79 chr3 36535999 36536118 -181501040 + MLT1H LTR MaLR 167 282 -267 708 268 38 21 chr3 36536483 36536774 -181500384 - MER113 DNA MER1_type? -196 325 30 192 40 0 0 chr3 36537166 36537191 -181499967 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 619 264 5 35 chr3 36537473 36537674 -181499484 - L2 LINE L2 -8 3305 3111 278 67 22 0 chr3 36537695 36537740 -181499418 + (TG)n Simple_repeat Simple_repeat 2 47 0 1805 47 0 5 chr3 36537989 36538204 -181498954 - AluY SINE Alu 0 311 98 317 247 151 38 chr3 36538510 36538696 -181498462 - MLT1F LTR MaLR -66 476 295 293 289 187 18 chr3 36539101 36539267 -181497891 + MIR SINE MIR 20 213 -49 415 268 33 46 chr3 36539350 36539503 -181497655 - MLT1J LTR MaLR -8 503 353 1574 214 21 122 chr3 36539505 36540301 -181496857 - L1MD3 LINE L1 -831 7164 6311 * 1580 213 28 62 chr3 36540297 36541055 -181496103 - L1ME LINE L1 -572 5594 4857 366 196 41 0 chr3 36541135 36541232 -181495926 + MER20B DNA MER1_type 585 685 -98 1343 293 71 31 chr3 36541325 36541468 -181495690 - L2 LINE L2 -512 2802 2666 2315 113 0 0 chr3 36541468 36541770 -181495388 + AluSx SINE Alu 2 303 -9 1343 293 71 31 chr3 36541770 36542175 -181494983 - L2 LINE L2 -648 2666 2232 430 265 56 6 chr3 36542195 36542357 -181494801 - HAL1 LINE L1 -1224 1283 1114 2339 131 15 35 chr3 36542631 36543029 -181494129 + MLT1B LTR MaLR 1 390 0 2281 103 0 34 chr3 36543439 36543759 -181493399 - AluSg SINE Alu 0 310 2 2418 83 0 10 chr3 36543952 36544264 -181492894 - AluSp SINE Alu -4 309 1 21 0 0 0 chr3 36544448 36544469 -181492689 + AT_rich Low_complexity Low_complexity 1 21 0 190 400 0 9 chr3 36544601 36544706 -181492452 - MER5A DNA MER1_type -4 185 82 29 0 0 0 chr3 36544978 36545007 -181492151 + AT_rich Low_complexity Low_complexity 1 29 0 406 343 60 10 chr3 36545870 36546071 -181491087 + MIR SINE MIR 18 228 -34 204 295 107 67 chr3 36546065 36546289 -181490869 - L2 LINE L2 -535 2779 2547 * 2249 107 3 19 chr3 36547098 36547415 -181489743 - AluSx SINE Alu 0 312 1 1077 83 0 0 chr3 36547417 36547549 -181489609 - AluSq/x SINE Alu -180 132 1 807 272 58 9 chr3 36548197 36548421 -181488737 - MIR SINE MIR 0 262 28 354 45 0 0 chr3 36548941 36548985 -181488173 + (TG)n Simple_repeat Simple_repeat 2 45 0 1346 221 103 25 chr3 36549290 36549725 -181487433 + MER20B DNA MER1_type 293 761 -22 207 69 0 0 chr3 36550231 36550260 -181486898 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr3 36550628 36550656 -181486502 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 36550986 36551014 -181486144 + AT_rich Low_complexity Low_complexity 1 28 0 243 188 21 0 chr3 36551031 36551079 -181486079 + MER91 DNA MER1_type 79 127 -63 28 0 0 0 chr3 36551505 36551533 -181485625 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr3 36553236 36553256 -181483902 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 408 378 13 0 chr3 36553518 36553674 -181483484 - MIR3 SINE MIR -13 195 38 264 217 58 14 chr3 36553891 36553960 -181483198 + MIR SINE MIR 179 250 -12 290 135 19 0 chr3 36553963 36554015 -181483143 + L2 LINE L2 3261 3313 0 261 224 144 56 chr3 36554620 36554745 -181482413 + MIR SINE MIR 49 184 -78 693 261 70 60 chr3 36554981 36555265 -181481893 + MLT1J LTR MaLR 223 509 -2 430 279 90 0 chr3 36557091 36557202 -181479956 + L2 LINE L2 3190 3310 -3 669 191 30 15 chr3 36557799 36557930 -181479228 - FLAM_A SINE Alu 0 133 1 231 234 130 0 chr3 36557948 36558025 -181479133 - L1ME LINE L1 -411 5710 5624 423 261 73 26 chr3 36558075 36558376 -181478782 - L1ME LINE L1 -753 5393 5212 27 49 0 0 chr3 36558401 36558442 -181478716 + AT_rich Low_complexity Low_complexity 1 41 0 279 293 32 0 chr3 36558517 36558640 -181478518 - L1ME LINE L1 -1112 5034 4908 1454 211 148 94 chr3 36558687 36559581 -181477577 - LTR1B LTR ERV1 0 1020 3 1803 136 40 22 chr3 36559780 36560103 -181477055 + L1MB2 LINE L1 5750 6078 -93 994 171 39 17 chr3 36560339 36560520 -181476638 - MER20B DNA MER1_type -17 202 18 499 297 19 48 chr3 36561052 36561256 -181475902 - MIR SINE MIR -47 215 15 511 284 60 33 chr3 36562157 36562216 -181474942 + MER5A DNA MER1_type 2 58 -131 2299 119 0 6 chr3 36562216 36562527 -181474631 - AluSx SINE Alu -3 309 1 511 284 60 33 chr3 36562527 36562650 -181474508 + MER5A DNA MER1_type 58 189 0 1350 165 34 49 chr3 36562733 36563061 -181474097 + MER33 DNA MER1_type 2 324 0 863 252 25 41 chr3 36563160 36563402 -181473756 - MIR SINE MIR -6 256 19 806 188 16 172 chr3 36565590 36565776 -181471382 + MLT1E LTR MaLR 1 162 -431 269 175 70 0 chr3 36565756 36565813 -181471345 + MLT1E LTR MaLR 119 179 -414 * 629 244 25 45 chr3 36565901 36566006 -181471152 + LTR16C LTR ERVL 286 387 -104 2017 133 128 13 chr3 36566006 36566390 -181470768 + MSTA LTR MaLR 1 428 0 629 244 25 45 chr3 36566390 36566485 -181470673 + LTR16C LTR ERVL 387 482 -9 670 157 0 90 chr3 36568216 36568350 -181468808 + MER7A DNA MER2_type 1 120 -226 281 306 92 13 chr3 36568972 36569156 -181468002 + MIR3 SINE MIR 3 207 -55 41 66 0 0 chr3 36569166 36569242 -181467916 + AT_rich Low_complexity Low_complexity 1 76 0 1425 141 14 0 chr3 36569384 36569597 -181467561 - Tigger3(Golem) DNA MER2_type 0 3029 2814 244 361 8 33 chr3 36570040 36570162 -181466996 - MIR3 SINE MIR -76 132 14 505 248 29 0 chr3 36570244 36570349 -181466809 + MER81 DNA DNA 3 110 -4 531 226 92 6 chr3 36570371 36570535 -181466623 + MER5B DNA MER1_type 1 178 0 300 27 0 0 chr3 36570649 36570686 -181466472 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7750 23 0 3 chr3 36570939 36572013 -181465145 - L1PA3 LINE L1 0 6155 5083 378 0 0 0 chr3 36572948 36572990 -181464168 + (TG)n Simple_repeat Simple_repeat 2 43 0 276 322 50 0 chr3 36573377 36573498 -181463660 + LTR67 LTR ERVL 380 506 -51 201 245 0 0 chr3 36573539 36573588 -181463570 + A-rich Low_complexity Low_complexity 2 50 0 202 282 254 9 chr3 36574884 36574994 -181462164 + MIR SINE MIR 6 142 -120 575 151 84 0 chr3 36575835 36575954 -181461204 - L1MA9 LINE L1 -38 6274 6146 201 234 78 31 chr3 36576050 36576114 -181461044 - MER5A DNA MER1_type 0 189 123 11029 176 21 50 chr3 36576341 36581331 -181455827 - L1M1 LINE L1 -744 6821 1685 1921 144 0 21 chr3 36581331 36581615 -181455543 + AluSq SINE Alu 1 278 -35 333 0 0 0 chr3 36581616 36581653 -181455505 + (TC)n Simple_repeat Simple_repeat 2 38 0 225 0 0 0 chr3 36581652 36581677 -181455481 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 11029 176 21 50 chr3 36581653 36582833 -181454325 - L1M1 LINE L1 -5879 1686 321 319 153 0 0 chr3 36582833 36582892 -181454266 + Alu SINE Alu 241 299 -2 1977 113 62 0 chr3 36583170 36583462 -181453696 + AluSx SINE Alu 1 310 -2 947 302 127 36 chr3 36583466 36584494 -181452664 + HAL1 LINE L1 1063 2183 -324 1830 144 56 3 chr3 36584672 36584957 -181452201 + AluSq SINE Alu 1 300 -13 487 266 58 44 chr3 36584958 36585232 -181451926 + L1MC/D LINE L1 3079 3356 -2790 752 45 99 13 chr3 36585533 36585756 -181451402 + CT-rich Low_complexity Low_complexity 1 242 0 615 171 11 48 chr3 36585771 36585958 -181451200 + CT-rich Low_complexity Low_complexity 1 180 0 1466 206 40 0 chr3 36585958 36586254 -181450904 - AluJo SINE Alu -4 308 1 342 259 120 120 chr3 36586416 36586876 -181450282 + L1MC/D LINE L1 3986 4445 -1701 246 244 52 17 chr3 36586918 36587033 -181450125 + L1MC/D LINE L1 4478 4596 -1550 688 264 68 55 chr3 36587052 36587362 -181449796 + L2 LINE L2 2984 3297 -16 22 35 0 0 chr3 36587495 36587524 -181449634 + AT_rich Low_complexity Low_complexity 1 29 0 6686 150 24 2 chr3 36587654 36589607 -181447551 - L1PA11 LINE L1 -2 6172 4186 227 299 32 19 chr3 36589609 36589766 -181447392 + L1MC/D LINE L1 4678 4836 -1310 182 221 88 15 chr3 36590609 36590677 -181446481 + L3 LINE CR1 1380 1452 -125 2333 133 42 28 chr3 36590701 36591128 -181446030 - L1MC1 LINE L1 0 6333 5901 223 284 0 68 chr3 36591149 36591237 -181445921 + MIR SINE MIR 67 148 -114 905 206 22 0 chr3 36591614 36591798 -181445360 + MLT1B LTR MaLR 1 188 -202 311 196 0 0 chr3 36591798 36591854 -181445304 + MLT1B LTR MaLR 333 388 -2 235 330 123 9 chr3 36591898 36592004 -181445154 - MIR SINE MIR -10 252 135 507 274 157 7 chr3 36592536 36592689 -181444469 - MER5A DNA MER1_type -5 184 9 382 316 85 37 chr3 36592770 36593042 -181444116 + L1MC/D LINE L1 5392 5676 -2132 1750 133 43 7 chr3 36593232 36593532 -181443626 - AluSx SINE Alu -1 311 1 749 234 23 0 chr3 36594072 36594247 -181442911 + MLT1B LTR MaLR 10 188 -202 311 196 0 0 chr3 36594247 36594303 -181442855 + MLT1B LTR MaLR 333 388 -2 241 321 123 9 chr3 36594347 36594453 -181442705 - MIR SINE MIR -10 252 135 507 274 157 7 chr3 36594985 36595138 -181442020 - MER5A DNA MER1_type -5 184 9 382 316 85 37 chr3 36595219 36595491 -181441667 + L1MC/D LINE L1 5392 5676 -2132 2086 115 30 0 chr3 36595681 36595976 -181441182 - AluSx SINE Alu -8 304 1 276 111 0 0 chr3 36596398 36596443 -181440715 + (TC)n Simple_repeat Simple_repeat 1 45 0 237 215 11 32 chr3 36596444 36596530 -181440628 + (TA)n Simple_repeat Simple_repeat 1 86 -5 303 28 0 0 chr3 36596530 36596566 -181440592 + (CA)n Simple_repeat Simple_repeat 1 36 0 237 215 11 32 chr3 36596566 36596572 -181440586 + (TA)n Simple_repeat Simple_repeat 86 91 0 189 0 0 0 chr3 36597539 36597560 -181439598 + (A)n Simple_repeat Simple_repeat 1 21 0 2264 107 0 10 chr3 36599981 36600281 -181436877 - AluSx SINE Alu -15 297 1 248 302 0 0 chr3 36600322 36600385 -181436773 - L2 LINE L2 -5 3308 3246 645 278 222 10 chr3 36600483 36600771 -181436387 + L2 LINE L2 2500 2848 -466 295 124 360 11 chr3 36600771 36600860 -181436298 + MER39 LTR ERV1 1 120 -587 * 1408 144 29 47 chr3 36600845 36601082 -181436076 + MER39 LTR ERV1 264 497 -210 2036 116 7 7 chr3 36601082 36601375 -181435783 - AluSq SINE Alu -20 293 1 1408 144 29 47 chr3 36601375 36601415 -181435743 + MER39 LTR ERV1 497 536 -171 1011 123 0 12 chr3 36601464 36601626 -181435532 + MER39 LTR ERV1 544 703 -4 583 342 74 0 chr3 36601631 36601821 -181435337 + L2 LINE L2 2851 3054 -259 216 204 0 0 chr3 36601921 36601965 -181435193 + T-rich Low_complexity Low_complexity 1 44 0 1606 115 26 43 chr3 36602004 36602308 -181434850 - AluSg SINE Alu -11 299 1 22 35 0 0 chr3 36602309 36602338 -181434820 + AT_rich Low_complexity Low_complexity 1 29 0 243 128 0 0 chr3 36602344 36602386 -181434772 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1739 139 14 0 chr3 36602386 36602673 -181434485 - AluSp SINE Alu -21 292 2 819 128 0 0 chr3 36602673 36602814 -181434344 + (TATTG)n Simple_repeat Simple_repeat 1 141 0 233 236 0 0 chr3 36602820 36602875 -181434283 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1156 260 84 34 chr3 36606268 36606296 -181430862 + L2 LINE L2 2757 2782 -531 1586 119 153 4 chr3 36606296 36606417 -181430741 + AluSx SINE Alu 1 103 -209 228 67 0 0 chr3 36606417 36606447 -181430711 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1586 119 153 4 chr3 36606447 36606593 -181430565 + AluSx SINE Alu 103 308 -4 1156 260 84 34 chr3 36606593 36607101 -181430057 + L2 LINE L2 2782 3312 -1 348 286 114 29 chr3 36607243 36607383 -181429775 + L2 LINE L2 3162 3313 0 189 0 0 0 chr3 36607549 36607570 -181429588 + (TA)n Simple_repeat Simple_repeat 2 22 0 279 302 0 0 chr3 36609081 36609197 -181427961 + C-rich Low_complexity Low_complexity 1 116 0 4541 204 27 33 chr3 36609889 36611825 -181425333 - L1MD1 LINE L1 -22 6220 4300 197 306 0 0 chr3 36613070 36613119 -181424039 + L2 LINE L2 3265 3313 0 446 141 24 0 chr3 36613586 36613667 -181423491 + MSTA LTR MaLR 1 83 -345 2165 111 9 15 chr3 36613667 36614009 -181423149 + THE1A LTR MaLR 1 340 -15 1950 150 32 3 chr3 36614007 36614346 -181422812 + MSTA LTR MaLR 80 428 0 * 398 229 175 66 chr3 36614732 36614915 -181422243 + MIR SINE MIR 31 233 -29 251 318 24 0 chr3 36614928 36615013 -181422145 + MIR SINE MIR 104 190 -72 284 224 17 0 chr3 36616446 36616504 -181420654 - L2 LINE L2 0 3272 3214 405 102 0 0 chr3 36616510 36616569 -181420589 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 21 0 0 0 chr3 36616678 36616699 -181420459 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3 36617166 36617194 -181419964 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 2008 151 12 54 chr3 36618114 36618519 -181418639 + MLT1B LTR MaLR 1 388 -2 2055 234 141 37 chr3 36619351 36620335 -181416823 - MER97c DNA MER1_type? -3 1087 1 25 65 0 0 chr3 36620595 36620641 -181416517 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr3 36620680 36620708 -181416450 + AT_rich Low_complexity Low_complexity 1 28 0 719 231 40 71 chr3 36620716 36621040 -181416118 + L1ME3A LINE L1 5848 6161 -9 190 212 91 30 chr3 36621131 36621197 -181415961 + L2 LINE L2 1771 1840 -1474 270 322 119 0 chr3 36621905 36622023 -181415135 - MIR SINE MIR 0 262 131 506 264 40 79 chr3 36624962 36625189 -181411969 - L2 LINE L2 0 3313 3096 449 324 23 7 chr3 36627457 36627605 -181409553 + MIR3 SINE MIR 48 199 -9 23 0 0 0 chr3 36627914 36627937 -181409221 + AT_rich Low_complexity Low_complexity 1 23 0 14380 35 0 0 chr3 36628105 36630611 -181406547 - L1PA3 LINE L1 0 6155 3649 188 206 0 0 chr3 36631596 36631630 -181405528 - MIR SINE MIR -121 87 54 500 265 20 0 chr3 36631652 36631754 -181405404 + MER5A DNA MER1_type 10 113 -76 205 191 0 24 chr3 36632441 36632483 -181404675 + CT-rich Low_complexity Low_complexity 4 44 0 3740 127 82 27 chr3 36633518 36634187 -181402971 + MER50 LTR ERV1 6 711 -23 930 191 0 6 chr3 36634289 36634457 -181402701 + AluJo SINE Alu 1 167 -145 2946 176 0 47 chr3 36635014 36635519 -181401639 + MLT2B3 LTR ERVL 3 479 -75 2140 186 49 7 chr3 36635519 36635928 -181401230 - MSTA LTR MaLR 0 428 3 2946 176 0 47 chr3 36635928 36636001 -181401157 + MLT2B3 LTR ERVL 479 554 0 2282 120 0 0 chr3 36636064 36636372 -181400786 + AluSg SINE Alu 3 310 0 2364 189 36 18 chr3 36636445 36636822 -181400336 + MLT1D LTR MaLR 1 391 -114 2258 183 5 0 chr3 36636822 36637221 -181399937 - MER57A LTR ERV1 0 403 3 2364 189 36 18 chr3 36637221 36637339 -181399819 + MLT1D LTR MaLR 391 505 0 2285 100 3 28 chr3 36637561 36637881 -181399277 + AluSx SINE Alu 1 312 0 381 249 86 32 chr3 36637930 36638151 -181399007 + MER46C DNA MER2_type 26 258 -80 2032 128 7 7 chr3 36639078 36639407 -181397751 + AluSc SINE Alu 1 309 0 2041 118 3 17 chr3 36639520 36639833 -181397325 - AluSq SINE Alu 0 309 1 2133 171 8 3 chr3 36640994 36641357 -181395801 + MLT1A1 LTR MaLR 1 365 0 348 293 78 9 chr3 36641406 36641522 -181395636 + L2 LINE L2 3188 3311 -2 199 0 65 0 chr3 36641583 36641614 -181395544 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1299 236 28 38 chr3 36641616 36642043 -181395115 + HAL1 LINE L1 1374 1796 -711 336 299 85 29 chr3 36642124 36642465 -181394693 + HAL1 LINE L1 1903 2262 -245 1566 143 36 8 chr3 36642569 36642821 -181394337 + AluSx SINE Alu 47 305 -7 1448 105 4 116 chr3 36644284 36644611 -181392547 - AluSc SINE Alu 0 330 35 253 270 0 0 chr3 36644612 36644679 -181392479 - MIR SINE MIR -57 151 84 308 261 118 59 chr3 36644750 36644869 -181392289 - L2 LINE L2 0 3272 3147 384 369 38 0 chr3 36644915 36645072 -181392086 - L2 LINE L2 -437 2877 2715 255 319 11 11 chr3 36645989 36646080 -181391078 + GA-rich Low_complexity Low_complexity 2 92 0 216 338 0 0 chr3 36646610 36646684 -181390474 + MIR SINE MIR 186 259 -3 431 289 19 19 chr3 36646784 36646940 -181390218 - MIR3 SINE MIR -23 185 30 324 228 16 25 chr3 36647290 36647419 -181389739 - L1MC4 LINE L1 -1339 6983 1986 422 338 9 45 chr3 36647478 36647700 -181389458 - L2 LINE L2 -2 3311 3098 462 252 127 20 chr3 36648031 36648235 -181388923 - MIR SINE MIR -25 237 5 885 203 32 46 chr3 36648782 36648999 -181388159 + MER20 DNA MER1_type 1 214 -5 2983 235 70 20 chr3 36649157 36649938 -181387220 + L1MC4a LINE L1 2 883 -5657 315 273 22 14 chr3 36649945 36650084 -181387074 + L1MC4a LINE L1 5422 5561 -979 402 288 7 7 chr3 36650520 36650659 -181386499 - MER117 DNA MER1_type -35 162 24 270 299 110 26 chr3 36651338 36651492 -181385666 + MIR SINE MIR 53 219 -43 1984 255 91 22 chr3 36651699 36651772 -181385386 + L1MC4a LINE L1 5696 5763 -2439 180 0 0 0 chr3 36651772 36651792 -181385366 + (TA)n Simple_repeat Simple_repeat 1 20 0 1984 255 91 22 chr3 36651792 36652530 -181384628 + L1MC4a LINE L1 5763 6563 -1639 359 252 16 57 chr3 36652774 36652897 -181384261 + MER5B DNA MER1_type 71 177 -1 662 277 57 94 chr3 36652954 36653304 -181383854 + L2 LINE L2 2189 2525 -789 1394 175 4 0 chr3 36653421 36653689 -181383469 + L1MA9 LINE L1 6033 6301 -11 1110 286 54 37 chr3 36653805 36654563 -181382595 + L2 LINE L2 2550 3313 0 2437 134 52 45 chr3 36654674 36654986 -181382172 - L1MA9 LINE L1 0 6312 6004 2446 87 14 14 chr3 36654986 36655341 -181381817 + THE1A LTR MaLR 1 355 0 11500 94 15 10 chr3 36655342 36656587 -181380571 + THE1A-int LTR MaLR 2 1259 -321 1926 142 28 3 chr3 36656587 36656869 -181380289 - AluSg SINE Alu -21 289 1 11500 94 15 10 chr3 36656869 36657193 -181379965 + THE1A-int LTR MaLR 1259 1580 0 2180 149 6 8 chr3 36657193 36657549 -181379609 + THE1A LTR MaLR 1 355 0 2437 134 52 45 chr3 36657549 36657749 -181379409 - L1MA9 LINE L1 -307 6005 5793 207 69 0 0 chr3 36657749 36657778 -181379380 + (CA)n Simple_repeat Simple_repeat 2 30 0 255 215 19 9 chr3 36657786 36657893 -181379265 + (TA)n Simple_repeat Simple_repeat 1 108 0 2336 148 48 48 chr3 36657893 36658880 -181378278 - L1MA9 LINE L1 -518 5773 4789 247 273 0 0 chr3 36658880 36658946 -181378212 + L1 LINE L1 4350 4415 -1731 418 163 33 0 chr3 36659260 36659352 -181377806 + T-rich Low_complexity Low_complexity 4 98 0 1761 167 0 4 chr3 36659375 36659651 -181377507 - AluSq SINE Alu -38 275 1 869 222 58 0 chr3 36660687 36660894 -181376264 + MER20 DNA MER1_type 1 219 0 1463 249 83 30 chr3 36661790 36662332 -181374826 - MLT1E2 LTR MaLR 0 626 75 2170 96 10 3 chr3 36662332 36662624 -181374534 + AluY SINE Alu 3 296 -15 1463 249 83 30 chr3 36662624 36662704 -181374454 - MLT1E2 LTR MaLR -551 75 1 1594 181 73 27 chr3 36662709 36663079 -181374079 + MLT1B LTR MaLR 1 387 -3 2851 120 31 5 chr3 36663450 36663867 -181373291 + MSTA LTR MaLR 1 428 0 9271 153 34 16 chr3 36663868 36665489 -181371669 + MSTA-int LTR MaLR 2 1651 0 2623 141 29 7 chr3 36665489 36665908 -181371250 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr3 36666223 36666244 -181370914 + AT_rich Low_complexity Low_complexity 1 21 0 270 160 0 0 chr3 36667404 36667454 -181369704 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 837 236 198 0 chr3 36668844 36669056 -181368102 - MIR SINE MIR -1 261 8 342 0 0 0 chr3 36669101 36669139 -181368019 + (TG)n Simple_repeat Simple_repeat 2 39 0 2299 121 0 0 chr3 36669574 36669943 -181367215 - AluSq SINE Alu 0 369 1 271 379 26 0 chr3 36670833 36670949 -181366209 + L2 LINE L2 3153 3271 -1 193 200 0 0 chr3 36671275 36671310 -181365848 + MIR SINE MIR 109 143 -65 2178 152 0 0 chr3 36672207 36672517 -181364641 + AluSx SINE Alu 1 310 -2 321 282 106 17 chr3 36672637 36672820 -181364338 + L1MC/D LINE L1 2290 2527 -3901 265 327 25 35 chr3 36672865 36673067 -181364091 + L1MC/D LINE L1 5560 5759 -2285 22 0 0 0 chr3 36673410 36673432 -181363726 + AT_rich Low_complexity Low_complexity 1 22 0 5157 260 60 45 chr3 36674682 36675801 -181361357 + L1ME1 LINE L1 1093 2194 -4370 5127 142 23 5 chr3 36675801 36677155 -181360003 - L1PA16 LINE L1 -10 6156 4774 5157 260 60 45 chr3 36677155 36678564 -181358594 + L1ME1 LINE L1 2194 3580 -2984 542 267 118 20 chr3 36678564 36678759 -181358399 - MER58C DNA MER1_type 0 215 2 5157 260 60 45 chr3 36678759 36679350 -181357808 + L1ME1 LINE L1 3580 4161 -2403 2311 86 3 7 chr3 36679350 36679654 -181357504 + AluY SINE Alu 1 303 -8 5157 260 60 45 chr3 36679654 36680916 -181356242 + L1ME1 LINE L1 4161 5766 -798 585 141 0 0 chr3 36680918 36681003 -181356155 + AluJb SINE Alu 31 115 -197 621 173 8 0 chr3 36681017 36681144 -181356014 + L1ME1 LINE L1 5764 5891 -693 291 231 0 15 chr3 36681185 36681250 -181355908 + L1ME1 LINE L1 5986 6049 -533 261 109 0 0 chr3 36681250 36681296 -181355862 + (CA)n Simple_repeat Simple_repeat 2 47 0 1229 215 25 41 chr3 36681332 36681700 -181355458 + L1ME1 LINE L1 6137 6498 -86 2190 108 3 0 chr3 36682928 36683225 -181353933 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr3 36683322 36683352 -181353806 + AT_rich Low_complexity Low_complexity 1 30 0 419 250 66 13 chr3 36683792 36683944 -181353214 + MER103 DNA DNA 7 166 0 704 159 0 0 chr3 36684540 36684647 -181352511 + FLAM_C SINE Alu 12 118 -25 186 43 0 0 chr3 36684652 36684675 -181352483 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2284 113 3 3 chr3 36684823 36685133 -181352025 + AluSg SINE Alu 1 310 0 215 305 0 24 chr3 36685690 36685772 -181351386 + MIR SINE MIR 172 251 -11 198 191 0 0 chr3 36685788 36685830 -181351328 + (CTA)n Simple_repeat Simple_repeat 1 42 0 417 263 134 53 chr3 36685897 36686068 -181351090 + MER5A DNA MER1_type 4 188 -1 272 297 0 0 chr3 36686279 36686353 -181350805 + L2 LINE L2 2290 2363 -951 409 288 34 17 chr3 36686358 36686572 -181350586 - LTR16A1 LTR ERVL 0 457 279 442 295 154 6 chr3 36686585 36686741 -181350417 + MER5A DNA MER1_type 11 189 0 264 296 22 84 chr3 36686773 36686952 -181350206 - LTR16C LTR ERVL -242 249 82 218 234 21 0 chr3 36687555 36687602 -181349556 + L2 LINE L2 3264 3311 -2 549 51 0 0 chr3 36687918 36687996 -181349162 - L1PA2 LINE L1 0 6155 6078 188 119 0 24 chr3 36688262 36688304 -181348854 + (TC)n Simple_repeat Simple_repeat 2 42 0 360 296 73 59 chr3 36689011 36689182 -181347976 - MIR SINE MIR 0 262 89 465 303 78 7 chr3 36689182 36689324 -181347834 + MIR SINE MIR 2 153 -109 1055 141 0 0 chr3 36689328 36689505 -181347653 - MER6A DNA MER2_type 0 605 429 6838 79 6 0 chr3 36689505 36690663 -181346495 + L1P3 LINE L1 4364 5529 -625 40774 35 24 2 chr3 36690666 36696199 -181340959 + L1P1 LINE L1 2 5657 -498 849 86 0 0 chr3 36696428 36696544 -181340614 - L1PA8 LINE L1 -2 6170 6055 1953 177 11 6 chr3 36696544 36696905 -181340253 - MER6A DNA MER2_type -172 433 71 226 208 226 0 chr3 36696928 36696981 -181340177 + MIR SINE MIR 154 218 -44 1521 254 116 0 chr3 36697354 36697839 -181339319 + MLT1H LTR MaLR 1 541 -8 420 359 67 36 chr3 36698900 36699494 -181337664 - L2 LINE L2 -1 3271 2664 2119 123 3 3 chr3 36699683 36699984 -181337174 - AluSx SINE Alu -11 301 1 306 268 12 12 chr3 36699992 36700074 -181337084 + MER5A DNA MER1_type 56 137 -52 1150 199 71 22 chr3 36700475 36700797 -181336361 + MER58B DNA MER1_type 4 341 0 22 0 0 0 chr3 36700896 36700918 -181336240 + AT_rich Low_complexity Low_complexity 1 22 0 189 267 0 0 chr3 36702030 36702075 -181335083 - L2 LINE L2 -2 3311 3267 273 217 36 24 chr3 36702146 36702229 -181334929 - MLT1J2 LTR MaLR -21 429 346 382 235 26 17 chr3 36702326 36702441 -181334717 - MLT1J2 LTR MaLR -334 116 1 302 222 44 11 chr3 36702675 36702765 -181334393 - MIR SINE MIR -66 196 104 673 224 92 9 chr3 36703166 36703394 -181333764 + L1ME3A LINE L1 5422 5668 -496 234 0 0 0 chr3 36703399 36703425 -181333733 + (CA)n Simple_repeat Simple_repeat 1 26 0 1972 199 24 49 chr3 36703436 36703968 -181333190 - Charlie1b DNA MER1_type -4 519 1 357 335 106 13 chr3 36704016 36704252 -181332906 + L1ME3A LINE L1 5683 5940 -230 1490 40 0 0 chr3 36705359 36705536 -181331622 - L1PA3 LINE L1 -3 6152 5976 1217 198 115 54 chr3 36705779 36706152 -181331006 + MSTD LTR MaLR 1 396 0 279 261 35 70 chr3 36707031 36707146 -181330012 + MLT1H LTR MaLR 65 205 -344 417 154 5 0 chr3 36707537 36707625 -181329533 + MLT1H1 LTR MaLR 482 555 0 2143 121 0 0 chr3 36710041 36710373 -181326785 - AluSx SINE Alu 0 332 1 892 203 158 0 chr3 36710562 36710803 -181326355 - LTR16C LTR ERVL 0 491 213 207 365 20 54 chr3 36711206 36711354 -181325804 + L2 LINE L2 2909 3051 -221 455 293 110 10 chr3 36711617 36711824 -181325334 + MIR SINE MIR 20 246 -16 706 237 57 34 chr3 36711942 36712119 -181325039 - MER5A DNA MER1_type -3 186 6 704 223 13 25 chr3 36712157 36712314 -181324844 - MER5B DNA MER1_type -18 160 6 589 208 164 19 chr3 36712348 36712507 -181324651 + MER5A DNA MER1_type 8 189 0 252 252 431 8 chr3 36713437 36713560 -181323598 + MER5A DNA MER1_type 9 183 -6 248 224 41 0 chr3 36713574 36713623 -181323535 + MER5B DNA MER1_type 1 51 -127 292 143 0 0 chr3 36713773 36713815 -181323343 - 5S rRNA rRNA -79 42 1 24 0 0 0 chr3 36714147 36714171 -181322987 + AT_rich Low_complexity Low_complexity 1 24 0 670 224 107 24 chr3 36714498 36714703 -181322455 - MER58A DNA MER1_type -1 223 2 315 325 124 0 chr3 36716052 36716221 -181320937 - MIR SINE MIR -65 197 8 276 149 0 0 chr3 36716623 36716670 -181320488 - MER94 DNA DNA -77 57 11 189 250 83 0 chr3 36718821 36718869 -181318289 + MIR SINE MIR 45 96 -112 222 299 0 0 chr3 36718989 36719056 -181318102 - L2 LINE L2 -1358 1956 1890 255 31 0 0 chr3 36719661 36719693 -181317465 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 71 0 0 chr3 36719699 36719741 -181317417 + AT_rich Low_complexity Low_complexity 1 42 0 250 143 32 32 chr3 36719923 36719986 -181317172 + CT-rich Low_complexity Low_complexity 2 64 0 280 306 63 9 chr3 36720262 36720373 -181316785 - MIR SINE MIR -65 197 81 405 58 0 0 chr3 36720559 36720611 -181316547 + (TG)n Simple_repeat Simple_repeat 2 53 0 250 200 100 0 chr3 36720611 36720671 -181316487 - MER112 DNA MER1_type -194 66 1 1886 173 61 6 chr3 36720867 36721213 -181315945 + MLT1A1 LTR MaLR 1 365 0 213 121 0 0 chr3 36722063 36722096 -181315062 + (GA)n Simple_repeat Simple_repeat 2 34 0 1815 148 50 28 chr3 36722178 36722535 -181314623 + MLT1A1 LTR MaLR 1 365 0 278 281 183 18 chr3 36722975 36723139 -181314019 + MLT1H1 LTR MaLR 48 241 -349 1674 141 30 7 chr3 36723170 36723475 -181313683 - L1MC3 LINE L1 -149 7636 7325 824 201 47 23 chr3 36723471 36724058 -181313100 - L1M4b LINE L1 -1137 5820 4941 * 3412 141 60 43 chr3 36724059 36724074 -181313084 - LTR8A LTR ERV1 0 727 714 3999 88 18 0 chr3 36724074 36724617 -181312541 + MER41A LTR ERV1 2 554 0 3412 141 60 43 chr3 36724617 36725316 -181311842 - LTR8A LTR ERV1 -13 714 1 5146 243 28 55 chr3 36725316 36725772 -181311386 - L1M4b LINE L1 -2014 4943 4476 3037 57 5 3 chr3 36725772 36726157 -181311001 - L1PA6 LINE L1 -3 6151 5766 5146 243 28 55 chr3 36726157 36726236 -181310922 - L1M4b LINE L1 -2481 4476 4396 2125 156 0 3 chr3 36726236 36726544 -181310614 - AluJb SINE Alu -2 310 4 5146 243 28 55 chr3 36726544 36728220 -181308938 - L1M4b LINE L1 -2561 4396 2858 1549 69 15 0 chr3 36728220 36728424 -181308734 - L1PA5 LINE L1 -3 6151 5945 5146 243 28 55 chr3 36728424 36728801 -181308357 - L1M4b LINE L1 -4099 2858 2473 2299 216 62 33 chr3 36729026 36729213 -181307945 - L1M4b LINE L1 -4633 2326 2146 2149 186 14 30 chr3 36729213 36729415 -181307743 + Tigger2a DNA MER2_type 1 205 -2503 2184 137 0 0 chr3 36729415 36729721 -181307437 - AluSx SINE Alu -6 306 1 2149 186 14 30 chr3 36729721 36729959 -181307199 + Tigger2a DNA MER2_type 205 434 0 2299 216 62 33 chr3 36729959 36730803 -181306355 - L1M4b LINE L1 -4813 2146 1259 214 50 50 0 chr3 36730803 36730843 -181306315 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 2299 216 62 33 chr3 36730843 36731034 -181306124 - L1M4b LINE L1 -5700 1259 1075 249 407 34 0 chr3 36731604 36731722 -181305436 - L2 LINE L2 -6 3266 3145 303 302 38 9 chr3 36732342 36732448 -181304710 + MIR SINE MIR 102 210 -52 197 302 47 47 chr3 36732944 36733050 -181304108 + L2 LINE L2 3145 3250 -22 275 284 138 28 chr3 36733188 36733297 -181303861 - L2 LINE L2 0 3313 3193 44 20 0 0 chr3 36735016 36735067 -181302091 + AT_rich Low_complexity Low_complexity 1 51 0 24 67 0 0 chr3 36736409 36736454 -181300704 + AT_rich Low_complexity Low_complexity 1 45 0 222 118 0 0 chr3 36736505 36736539 -181300619 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 6496 115 81 14 chr3 36736599 36737720 -181299438 + Tigger3b DNA MER2_type 2 1197 -34 296 368 26 0 chr3 36738772 36738886 -181298272 - L2 LINE L2 0 3313 3197 772 243 116 45 chr3 36739028 36739451 -181297707 + MLT1L LTR MaLR 59 615 0 234 222 69 14 chr3 36740022 36740094 -181297064 + L1M4c LINE L1 2423 2498 -3886 2056 128 3 7 chr3 36740147 36740443 -181296715 + AluSq SINE Alu 1 295 -18 1193 210 33 47 chr3 36741088 36741364 -181295794 - MSTD LTR MaLR 0 396 125 735 335 70 20 chr3 36742000 36742102 -181295056 - LTR16A LTR ERVL 0 450 355 1441 229 41 33 chr3 36742102 36742495 -181294663 - MSTD LTR MaLR 0 396 1 735 335 70 20 chr3 36742495 36742735 -181294423 - LTR16A LTR ERVL -95 355 91 1067 312 31 48 chr3 36742736 36742948 -181294210 - HERV16 LTR ERVL -2369 2627 2413 1115 186 9 23 chr3 36742948 36743169 -181293989 - MER20 DNA MER1_type -1 218 1 1067 312 31 48 chr3 36743169 36743437 -181293721 - HERV16 LTR ERVL -2583 2413 2155 1976 49 0 8 chr3 36743550 36743794 -181293364 + AluY SINE Alu 66 307 -4 363 193 0 0 chr3 36743795 36743852 -181293306 - MER58 DNA MER1_type -2168 252 196 1719 212 3 8 chr3 36743863 36744226 -181292932 - L1PB4 LINE L1 -4 6152 5790 351 113 0 0 chr3 36744226 36744279 -181292879 + (TA)n Simple_repeat Simple_repeat 1 53 0 1719 212 3 8 chr3 36744279 36744297 -181292861 - L1PB4 LINE L1 -366 5790 5773 1762 150 19 28 chr3 36744297 36744822 -181292336 - L1PB4 LINE L1 -744 5402 5023 198 323 73 89 chr3 36745071 36745319 -181291839 + L2 LINE L2 2512 2755 -559 1438 317 135 33 chr3 36745957 36747118 -181290040 - L2 LINE L2 -246 3067 1793 346 259 266 6 chr3 36747987 36748145 -181289013 - L3 LINE CR1 -2 1575 1377 198 259 0 62 chr3 36748742 36748823 -181288335 + MIR SINE MIR 79 154 -108 2201 119 0 3 chr3 36749505 36749815 -181287343 - AluSg SINE Alu -1 309 1 918 290 37 53 chr3 36749830 36750206 -181286952 - MLT1J1 LTR MaLR -8 438 69 1573 238 70 79 chr3 36751273 36751560 -181285598 + MER20B DNA MER1_type 8 296 -487 224 29 0 29 chr3 36751560 36751594 -181285564 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 666 198 0 0 chr3 36751598 36751714 -181285444 - FLAM_C SINE Alu -17 116 1 1573 238 70 79 chr3 36751714 36752051 -181285107 + MER20B DNA MER1_type 299 631 -152 26 0 0 0 chr3 36752722 36752748 -181284410 + AT_rich Low_complexity Low_complexity 1 26 0 420 298 131 5 chr3 36752991 36753182 -181283976 - LTR33 LTR ERVL -1 520 306 254 319 60 26 chr3 36753243 36753359 -181283799 - LTR33A LTR ERVL -331 192 73 300 272 0 25 chr3 36753681 36753762 -181283396 - L2 LINE L2 -5 3308 3230 269 286 16 0 chr3 36753849 36753912 -181283246 + MLT1K LTR MaLR 141 204 -384 194 237 246 70 chr3 36754200 36754314 -181282844 - MER5A DNA MER1_type -1 188 55 37 62 0 0 chr3 36754637 36754702 -181282456 + AT_rich Low_complexity Low_complexity 1 65 0 493 220 70 85 chr3 36755008 36755208 -181281950 - L2 LINE L2 -10 3303 3107 969 167 30 0 chr3 36755244 36755412 -181281746 + FRAM SINE Alu 1 171 -5 184 0 62 31 chr3 36755831 36755863 -181281295 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 2058 111 7 0 chr3 36757021 36757300 -181279858 + AluY SINE Alu 1 281 -30 306 0 0 0 chr3 36757321 36757355 -181279803 + (TA)n Simple_repeat Simple_repeat 2 35 0 315 326 83 10 chr3 36757355 36757656 -181279502 + L1M4 LINE L1 2484 2806 -3340 319 353 22 7 chr3 36757724 36757863 -181279295 - MIR3 SINE MIR -1 207 67 354 314 89 26 chr3 36757880 36758071 -181279087 + MIR SINE MIR 14 216 -46 1448 203 178 51 chr3 36758748 36759220 -181277938 - MLT1H LTR MaLR -16 533 2 2239 127 3 29 chr3 36759342 36759688 -181277470 + MER1B DNA MER1_type 1 337 0 34 0 0 0 chr3 36760398 36760432 -181276726 + AT_rich Low_complexity Low_complexity 1 34 0 517 56 14 0 chr3 36760432 36760503 -181276655 - L1PA16 LINE L1 -9 6157 6086 3696 99 2 25 chr3 36760674 36761238 -181275920 + L1PB1 LINE L1 5600 6150 -1 21 0 0 0 chr3 36761238 36761259 -181275899 + AT_rich Low_complexity Low_complexity 1 21 0 256 65 87 22 chr3 36762704 36762750 -181274408 - MADE1 DNA Mariner -4 76 28 420 111 0 0 chr3 36762774 36762837 -181274321 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 57 0 0 chr3 36763179 36763214 -181273944 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 36763279 36763301 -181273857 + AT_rich Low_complexity Low_complexity 1 22 0 261 219 57 19 chr3 36763355 36763460 -181273698 + L1MC/D LINE L1 5213 5321 -825 296 300 67 36 chr3 36763550 36763803 -181273355 + L1MC/D LINE L1 5469 5729 -392 341 254 363 7 chr3 36763859 36764073 -181273085 - MLT1G LTR MaLR 0 590 453 1782 166 169 5 chr3 36764073 36764441 -181272717 - MSTA LTR MaLR 0 428 1 341 254 363 7 chr3 36764441 36764521 -181272637 - MLT1G LTR MaLR -137 453 191 230 231 0 0 chr3 36764792 36764844 -181272314 + L1MC/D LINE L1 5860 5911 -1897 11792 175 9 20 chr3 36764965 36767327 -181269831 + L1PA12 LINE L1 1459 4586 -2998 453 132 0 0 chr3 36767327 36767389 -181269769 + L1PA8 LINE L1 6092 6159 -13 2242 110 3 0 chr3 36767450 36767749 -181269409 + AluSx SINE Alu 5 304 -8 301 304 99 35 chr3 36767934 36768105 -181269053 - MLT1J2 LTR MaLR -2 448 267 358 254 19 1 chr3 36768157 36768268 -181268890 - MLT1J2 LTR MaLR -232 177 68 874 249 9 28 chr3 36768523 36768736 -181268422 - MER63A DNA MER1_type 0 210 2 285 345 58 14 chr3 36768880 36769019 -181268139 + MIR3 SINE MIR 37 181 -27 631 254 142 45 chr3 36769334 36769734 -181267424 - MLT1H1 LTR MaLR 0 555 69 516 266 61 41 chr3 36770204 36770697 -181266461 + L1ME LINE L1 5149 5639 -523 285 198 81 99 chr3 36770945 36771056 -181266102 + MER70A LTR ERVL 342 450 -22 260 294 0 0 chr3 36771128 36771196 -181265962 + MLT1J LTR MaLR 94 161 -350 226 318 65 0 chr3 36771165 36771272 -181265886 + MLT1L LTR MaLR 195 308 -307 * 324 347 25 16 chr3 36771565 36771686 -181265472 - MIR SINE MIR -100 162 41 371 395 65 19 chr3 36771706 36771967 -181265191 - L3 LINE CR1 -375 1202 930 1797 179 0 0 chr3 36771973 36772275 -181264883 + AluJo SINE Alu 1 302 -10 488 257 52 29 chr3 36772510 36772646 -181264512 + L2 LINE L2 3175 3313 0 560 336 89 0 chr3 36774385 36774656 -181262502 + L1MC/D LINE L1 5522 5816 -1992 26 0 0 0 chr3 36774873 36774899 -181262259 + AT_rich Low_complexity Low_complexity 1 26 0 409 204 9 18 chr3 36776219 36776332 -181260826 + (TATATG)n Simple_repeat Simple_repeat 5 116 0 282 259 60 65 chr3 36776477 36776662 -181260496 - HAL1 LINE L1 -1 2506 2323 1395 264 105 61 chr3 36776762 36777718 -181259440 - HAL1 LINE L1 -1063 1444 424 295 321 171 7 chr3 36778339 36778479 -181258679 - MIR SINE MIR -72 190 28 229 296 169 35 chr3 36779235 36779407 -181257751 - L2 LINE L2 -4 3309 3115 843 278 71 42 chr3 36779722 36780147 -181257011 - L2 LINE L2 -73 3240 2804 287 327 65 28 chr3 36780251 36780358 -181256800 - L2 LINE L2 -514 2800 2690 10516 52 3 1 chr3 36780358 36781696 -181255462 - L1PA5 LINE L1 -3295 2851 1511 * 11204 45 1 5 chr3 36781683 36783099 -181254059 + L1PA5 LINE L1 2819 4228 -1918 4557 58 5 3 chr3 36783100 36783674 -181253484 + L1PA5 LINE L1 5580 6154 0 235 371 0 11 chr3 36783800 36783889 -181253269 - L3 LINE CR1 -1 1576 1489 267 297 57 27 chr3 36783966 36784108 -181253050 + MIR SINE MIR 3 146 -62 2689 139 21 38 chr3 36784427 36784902 -181252256 - MLT1C LTR MaLR 0 467 1 964 261 138 54 chr3 36785376 36785766 -181251392 + LTR16C LTR ERVL 1 423 -68 212 59 29 0 chr3 36785922 36785956 -181251202 + (TA)n Simple_repeat Simple_repeat 2 36 0 26 50 0 0 chr3 36786185 36786225 -181250933 + AT_rich Low_complexity Low_complexity 1 40 0 308 299 40 84 chr3 36786238 36786489 -181250669 + L1MC4a LINE L1 5822 6061 -1747 1940 139 10 7 chr3 36786844 36787132 -181250026 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr3 36787135 36787162 -181249996 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 758 228 14 7 chr3 36787897 36788042 -181249116 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr3 36788043 36788065 -181249093 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2099 137 42 33 chr3 36788273 36788632 -181248526 + THE1B LTR MaLR 1 362 -2 1046 206 35 27 chr3 36788706 36789184 -181247974 - L1ME3 LINE L1 -1 6161 5567 1791 262 74 32 chr3 36789385 36789885 -181247273 - MLT1G1 LTR MaLR -2 593 73 419 252 79 109 chr3 36789933 36790051 -181247107 - MLT1H1-int LTR MaLR -19 1352 1232 1337 217 85 14 chr3 36790051 36790238 -181246920 - MLT1B LTR MaLR 0 390 218 195 42 0 0 chr3 36790238 36790262 -181246896 + (GA)n Simple_repeat Simple_repeat 2 25 0 1337 217 85 14 chr3 36790262 36790438 -181246720 - MLT1B LTR MaLR -172 218 1 419 252 79 109 chr3 36790438 36790648 -181246510 - MLT1H1-int LTR MaLR -139 1232 1034 250 270 19 120 chr3 36791265 36791524 -181245634 - MLT1H1-int LTR MaLR -827 544 312 327 234 116 33 chr3 36791548 36791704 -181245454 - MLT1H1-int LTR MaLR -1269 102 11 1935 241 41 19 chr3 36791706 36792174 -181244984 - MLT1H1 LTR MaLR -12 543 66 376 272 147 0 chr3 36792348 36792484 -181244674 + MIR SINE MIR 80 235 -27 12096 200 34 31 chr3 36792643 36793670 -181243488 - L1 LINE L1 -1088 5240 4217 1933 126 0 7 chr3 36793670 36793978 -181243180 - AluSg SINE Alu 0 306 1 12096 200 34 31 chr3 36793978 36796803 -181240355 - L1 LINE L1 -2111 4217 1362 1573 98 18 0 chr3 36796795 36797020 -181240138 - L1MA4 LINE L1 -338 5962 5734 * 1177 114 6 0 chr3 36797022 36797188 -181239970 - THE1C LTR MaLR 0 375 209 5443 186 31 8 chr3 36797210 36798387 -181238771 - L1 LINE L1 -1416 4730 3527 637 219 52 66 chr3 36798402 36798690 -181238468 + L1M1 LINE L1 3017 3300 -4265 683 185 144 0 chr3 36798696 36798869 -181238289 - L1 LINE L1 -4065 1263 1066 1511 202 20 17 chr3 36798870 36799167 -181237991 - L1 LINE L1 -5021 307 10 1265 108 19 47 chr3 36799229 36799441 -181237717 + Tigger2a DNA MER2_type 2 207 -227 610 204 0 61 chr3 36799441 36799573 -181237585 - FLAM_A SINE Alu -18 124 1 1126 150 15 104 chr3 36799575 36799639 -181237519 + Tigger2a DNA MER2_type 208 276 -2442 2422 74 3 6 chr3 36799639 36799950 -181237208 + AluY SINE Alu 2 311 0 1126 150 15 104 chr3 36799950 36800145 -181237013 + Tigger2a DNA MER2_type 276 444 0 388 288 116 20 chr3 36800408 36800554 -181236604 - L2 LINE L2 -4 3268 3109 1648 201 55 80 chr3 36801666 36802353 -181234805 - L1MC5 LINE L1 -54 7907 7238 1076 241 56 56 chr3 36802488 36803120 -181234038 - L1MC5 LINE L1 -897 6911 6324 204 253 11 21 chr3 36803127 36803222 -181233936 + (TA)n Simple_repeat Simple_repeat 1 94 0 320 306 91 27 chr3 36803247 36803433 -181233725 - L1MC4a LINE L1 -1544 6264 6067 227 196 22 0 chr3 36803507 36803553 -181233605 - L1MC4a LINE L1 -1871 5937 5891 30 59 0 0 chr3 36803627 36803678 -181233480 + AT_rich Low_complexity Low_complexity 1 51 0 930 260 31 0 chr3 36803806 36804033 -181233125 - MIR SINE MIR -16 246 13 323 290 0 41 chr3 36804081 36804226 -181232932 - L1MC4a LINE L1 -392 5729 5591 518 176 128 39 chr3 36804299 36804451 -181232707 - L1ME1 LINE L1 0 6334 6011 223 285 219 7 chr3 36804953 36805090 -181232068 - MIR3 SINE MIR -4 204 39 29 28 0 0 chr3 36805600 36805636 -181231522 + AT_rich Low_complexity Low_complexity 1 36 0 715 287 55 0 chr3 36805776 36805978 -181231180 + MIR SINE MIR 1 213 -49 35 71 0 0 chr3 36808259 36808329 -181228829 + AT_rich Low_complexity Low_complexity 1 70 0 1908 138 24 17 chr3 36808533 36808830 -181228328 - AluSx SINE Alu -9 303 5 330 339 34 0 chr3 36809480 36809598 -181227560 - L2 LINE L2 -1 3312 3191 21 0 0 0 chr3 36809600 36809621 -181227537 + AT_rich Low_complexity Low_complexity 1 21 0 1314 307 65 5 chr3 36809982 36810431 -181226727 + L2 LINE L2 2838 3313 0 1174 196 31 68 chr3 36811038 36811364 -181225794 + L1MD2 LINE L1 6036 6349 -10 594 213 104 6 chr3 36812148 36812331 -181224827 + L1MD3 LINE L1 7795 7995 0 454 328 33 83 chr3 36812474 36812715 -181224443 - MIR SINE MIR -14 248 20 2742 135 19 12 chr3 36812769 36813251 -181223907 - L1MA5 LINE L1 -2 6298 5814 1674 224 66 68 chr3 36814156 36814790 -181222368 - L1MC4 LINE L1 -6 8036 7404 1031 218 9 5 chr3 36814797 36815013 -181222145 + L1MC4a LINE L1 7082 7298 -510 199 304 107 9 chr3 36815552 36815664 -181221494 - L2 LINE L2 -9 3304 3182 425 299 64 19 chr3 36815842 36815999 -181221159 - MIR SINE MIR -11 251 88 242 348 36 54 chr3 36816070 36816294 -181220864 - L2 LINE L2 -551 2763 2544 2098 219 52 11 chr3 36816673 36817138 -181220020 + LTR40a LTR ERVL 33 516 -3 2795 143 19 25 chr3 36817936 36818302 -181218856 - L1MC2 LINE L1 -3 6341 5977 2901 9 0 0 chr3 36818302 36818617 -181218541 - AluYb8 SINE Alu -3 315 1 2795 143 19 25 chr3 36818617 36818769 -181218389 - L1MC2 LINE L1 -367 5977 5826 2134 105 18 0 chr3 36818769 36819071 -181218087 - AluSx SINE Alu 0 307 1 279 0 0 0 chr3 36819071 36819102 -181218056 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1142 171 63 0 chr3 36819107 36819312 -181217846 - L1MC2 LINE L1 -578 5755 5538 198 0 0 0 chr3 36819370 36819392 -181217766 + (TG)n Simple_repeat Simple_repeat 2 23 0 1492 191 144 49 chr3 36819451 36819896 -181217262 + MLT1D LTR MaLR 1 487 -18 2567 167 31 29 chr3 36820002 36820524 -181216634 + L1MB7 LINE L1 5655 6177 -7 692 323 58 15 chr3 36820808 36821133 -181216025 - MLT1I LTR MaLR -66 343 5 1584 216 116 15 chr3 36821134 36821592 -181215566 + MLT1D LTR MaLR 2 505 0 202 170 57 19 chr3 36822226 36822279 -181214879 + MIR3 SINE MIR 116 170 -38 365 111 32 0 chr3 36822419 36822482 -181214676 + CT-rich Low_complexity Low_complexity 4 68 0 1396 165 28 35 chr3 36822482 36822737 -181214421 - AluJo SINE Alu -59 253 1 1511 252 74 19 chr3 36822998 36823749 -181213409 + L2 LINE L2 2517 3313 0 201 74 0 0 chr3 36823758 36823785 -181213373 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1638 182 0 4 chr3 36823791 36824066 -181213092 - AluJo SINE Alu -38 274 1 579 244 145 16 chr3 36824076 36824269 -181212889 - MLT1L LTR MaLR -56 559 342 361 288 18 27 chr3 36824284 36824395 -181212763 - L2 LINE L2 -2 3311 3202 1548 193 0 0 chr3 36824398 36824657 -181212501 - AluJb SINE Alu -53 259 1 249 226 155 24 chr3 36824657 36824741 -181212417 - MLT1L LTR MaLR -316 299 205 2152 113 0 3 chr3 36825904 36826188 -181210970 + AluSx SINE Alu 13 295 -17 207 308 64 13 chr3 36826189 36826267 -181210891 + MIR SINE MIR 49 130 -78 543 249 81 11 chr3 36827076 36827261 -181209897 + Charlie8 DNA MER1_type 78 275 -2142 333 238 45 104 chr3 36827734 36828003 -181209155 + MER112 DNA MER1_type 1 253 -3 16001 129 39 23 chr3 36828295 36828710 -181208448 + Tigger2 DNA MER2_type 13 420 -2298 1993 118 82 28 chr3 36828710 36829066 -181208092 - THE1C LTR MaLR 0 375 1 16001 129 39 23 chr3 36829066 36829571 -181207587 + Tigger2 DNA MER2_type 420 915 -1803 1558 211 20 3 chr3 36829571 36829869 -181207289 + AluJb SINE Alu 1 303 -9 16001 129 39 23 chr3 36829869 36831609 -181205549 + Tigger2 DNA MER2_type 915 2718 0 732 277 176 44 chr3 36831655 36832182 -181204976 + MLT1L LTR MaLR 19 615 0 274 322 26 9 chr3 36832430 36832545 -181204613 - L2 LINE L2 -5 3267 3151 269 194 81 16 chr3 36833630 36833692 -181203466 - L2 LINE L2 0 3313 3248 2063 129 0 20 chr3 36833926 36834229 -181202929 + AluSx SINE Alu 1 297 -15 2414 109 3 0 chr3 36834844 36835156 -181202002 + AluSp SINE Alu 1 313 0 654 298 11 6 chr3 36836106 36836287 -181200871 + LTR33 LTR ERVL 3 184 -337 1642 229 72 15 chr3 36836311 36836769 -181200389 - Charlie1b DNA MER1_type -19 504 21 934 229 105 31 chr3 36836786 36837044 -181200114 + LTR33 LTR ERVL 194 470 -51 2303 248 38 23 chr3 36837061 36837637 -181199521 + MLT1E LTR MaLR 2 586 -7 1561 236 86 162 chr3 36837930 36838921 -181198237 - L2 LINE L2 0 3313 2297 958 188 14 81 chr3 36838921 36839144 -181198014 - MER20 DNA MER1_type -11 208 1 1561 236 86 162 chr3 36839144 36839817 -181197341 - L2 LINE L2 -1016 2297 1574 815 255 11 16 chr3 36840032 36840304 -181196854 + LTR16C LTR ERVL 187 491 0 348 152 229 0 chr3 36840921 36841026 -181196132 - MIR SINE MIR -2 260 132 5249 107 160 126 chr3 36841090 36842644 -181194514 - pTR5 LTR ERV1 0 2438 375 1986 97 4 11 chr3 36842658 36842926 -181194232 - AluSc SINE Alu 0 309 44 297 314 55 90 chr3 36842974 36843167 -181193991 + L2 LINE L2 2770 2968 -304 2123 195 108 0 chr3 36843167 36843623 -181193535 + MLT1D LTR MaLR 1 505 0 297 314 55 90 chr3 36843623 36843946 -181193212 + L2 LINE L2 2968 3270 -2 6792 143 3 12 chr3 36844077 36845122 -181192036 + L1P3 LINE L1 1 1035 -4840 418 209 109 18 chr3 36895149 36895259 -181141899 + L2 LINE L2 3193 3312 -1 26 50 0 0 chr3 36895514 36895554 -181141604 + AT_rich Low_complexity Low_complexity 1 40 0 418 296 70 0 chr3 36895690 36895805 -181141353 - MIR SINE MIR -124 138 16 354 45 0 0 chr3 36896515 36896559 -181140599 + (CA)n Simple_repeat Simple_repeat 2 45 0 3738 217 28 13 chr3 36897166 36898095 -181139063 + L1 LINE L1 3233 4175 -1971 1442 207 58 5 chr3 36898522 36898904 -181138254 + L1 LINE L1 4160 4561 -1585 1869 168 3 0 chr3 36898905 36899202 -181137956 + AluSx SINE Alu 1 298 -14 991 235 14 0 chr3 36899310 36899527 -181137631 + MLT-int LTR MaLR 517 736 -999 347 259 176 0 chr3 36899612 36899743 -181137415 - HsTC2 DNA Tc2 -1742 156 3 1755 189 3 6 chr3 36899957 36900269 -181136889 - AluJo SINE Alu 0 312 2 205 289 105 0 chr3 36900590 36900666 -181136492 - L2 LINE L2 0 3272 3189 * 219 246 123 0 chr3 36900663 36900728 -181136430 - MIR SINE MIR -98 164 92 22 0 0 0 chr3 36900836 36900858 -181136300 + AT_rich Low_complexity Low_complexity 1 22 0 2905 76 0 13 chr3 36902313 36902693 -181134465 + THE1C LTR MaLR 1 375 0 2012 159 39 29 chr3 36902819 36903203 -181133955 + MLT1B LTR MaLR 3 390 0 1773 146 23 32 chr3 36903490 36903798 -181133360 - THE1C LTR MaLR 0 375 71 28398 81 16 3 chr3 36903980 36908315 -181128843 - HERVL-A2 LTR ERVL -1217 4437 1 360 71 0 36 chr3 36908315 36908371 -181128787 - MLT2A2 LTR ERVL 0 453 400 185 62 0 31 chr3 36908376 36908408 -181128750 + (TA)n Simple_repeat Simple_repeat 2 32 0 3312 196 50 13 chr3 36908458 36909847 -181127311 + L1M4c LINE L1 1910 3345 -3037 5577 145 19 18 chr3 36909968 36910913 -181126245 - L1M4c LINE L1 -5421 963 18 32 57 0 0 chr3 36911245 36911298 -181125860 + AT_rich Low_complexity Low_complexity 1 53 0 495 229 0 37 chr3 36912284 36912393 -181124765 + AluJo SINE Alu 118 222 -90 246 62 0 0 chr3 36912401 36912433 -181124725 + (A)n Simple_repeat Simple_repeat 1 32 0 2363 80 0 3 chr3 36912957 36913269 -181123889 + AluY SINE Alu 1 311 0 255 319 79 65 chr3 36914876 36914959 -181122199 - MIR SINE MIR -32 230 150 2197 104 37 0 chr3 36914959 36915258 -181121900 - AluSx SINE Alu -2 310 1 255 319 79 65 chr3 36915258 36915390 -181121768 - MIR SINE MIR -112 150 12 197 297 126 63 chr3 36915406 36915581 -181121577 + L3 LINE CR1 1303 1488 -89 270 56 0 0 chr3 36915614 36915650 -181121508 + (TG)n Simple_repeat Simple_repeat 2 37 0 184 333 115 11 chr3 36915690 36915777 -181121381 + MIR SINE MIR 49 144 -64 573 56 9 130 chr3 36915877 36915985 -181121173 - MSTA LTR MaLR -333 95 1 10560 111 10 31 chr3 36915985 36917597 -181119561 - THE1C-int LTR MaLR 0 1580 3 2182 147 5 36 chr3 36917599 36917986 -181119172 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr3 36918922 36918951 -181118207 + AT_rich Low_complexity Low_complexity 1 29 0 198 71 0 0 chr3 36920446 36920474 -181116684 + (TA)n Simple_repeat Simple_repeat 1 28 0 2145 110 3 0 chr3 36920475 36920766 -181116392 - AluSp SINE Alu -21 292 1 2305 168 3 8 chr3 36921887 36922275 -181114883 - MLT1B LTR MaLR -3 387 2 5299 174 31 28 chr3 36922488 36923722 -181113436 + L1MC1 LINE L1 5095 6332 -1 387 0 0 0 chr3 36923873 36923916 -181113242 + (CA)n Simple_repeat Simple_repeat 2 44 0 1962 247 73 79 chr3 36923944 36924722 -181112436 + L1MDa LINE L1 34 1027 -5513 686 206 49 0 chr3 36924723 36924927 -181112231 + L1MDa LINE L1 1258 1471 -5069 208 268 12 12 chr3 36925123 36925205 -181111953 + A-rich Low_complexity Low_complexity 3 84 0 808 126 7 0 chr3 36925227 36925362 -181111796 + L1PA12 LINE L1 5938 6073 -95 * 2430 41 0 0 chr3 36925350 36925664 -181111494 + L1P LINE L1 2890 3203 -2943 5530 28 18 1 chr3 36925665 36926335 -181110823 - L1PA4 LINE L1 0 6155 5475 180 247 356 0 chr3 36926863 36926936 -181110222 + MIR SINE MIR 2 100 -162 1126 219 129 20 chr3 36927077 36927434 -181109724 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3 36929212 36929234 -181107924 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 36929923 36929945 -181107213 + AT_rich Low_complexity Low_complexity 1 22 0 284 277 68 68 chr3 36931456 36931604 -181105554 + MIR SINE MIR 40 187 -75 186 118 0 0 chr3 36931972 36932006 -181105152 + (A)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 36934366 36934388 -181102770 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr3 36935207 36935240 -181101918 + AT_rich Low_complexity Low_complexity 1 33 0 5256 48 1 18 chr3 36935869 36936575 -181100583 - L1P LINE L1 -2248 3898 3205 14627 21 12 1 chr3 36936581 36939184 -181097974 + L1PA4 LINE L1 3606 6152 -3 630 132 0 0 chr3 36939194 36939300 -181097858 + L1PA13 LINE L1 6055 6160 -3 27 29 0 0 chr3 36939411 36939445 -181097713 + AT_rich Low_complexity Low_complexity 1 34 0 983 238 204 16 chr3 36939712 36940208 -181096950 + L1M4 LINE L1 2660 3248 -2898 777 310 92 4 chr3 36940734 36940973 -181096185 - MIR SINE MIR -1 261 2 24 0 8 0 chr3 36941071 36941132 -181096026 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr3 36941211 36941252 -181095906 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr3 36941518 36941539 -181095619 + AT_rich Low_complexity Low_complexity 1 21 0 667 290 80 51 chr3 36941923 36942471 -181094687 - L1M4 LINE L1 -1995 4151 3588 342 268 55 16 chr3 36942630 36942813 -181094345 - L1M4 LINE L1 -2975 3171 2982 576 258 84 98 chr3 36942901 36943625 -181093533 - L1M4 LINE L1 -3316 2830 2117 2040 132 23 0 chr3 36944039 36944342 -181092816 + AluSx SINE Alu 1 310 -2 768 263 105 13 chr3 36944706 36945010 -181092148 + Charlie7 DNA MER1_type 89 420 -2192 1986 153 36 53 chr3 36945180 36945458 -181091700 - MLT-int LTR MaLR -1331 404 133 2042 118 7 0 chr3 36945458 36945762 -181091396 + AluSq SINE Alu 1 306 0 1986 153 36 53 chr3 36945762 36945893 -181091265 - MLT-int LTR MaLR -1602 133 1 537 128 70 32 chr3 36945914 36946025 -181091133 - MLT1A1 LTR MaLR -263 102 1 * 564 162 126 24 chr3 36946025 36946190 -181090968 + HsTC2 DNA Tc2 1569 1750 -148 12484 213 47 6 chr3 36946196 36950025 -181087133 - L1PB1 LINE L1 -3 6864 2394 2464 65 3 0 chr3 36950025 36950334 -181086824 - AluY SINE Alu -1 310 1 12484 213 47 6 chr3 36950334 36952825 -181084333 - L1PB1 LINE L1 -4473 2394 7 271 222 0 0 chr3 36952825 36952888 -181084270 + HsTC2 DNA Tc2 1739 1801 -97 1411 197 13 39 chr3 36952890 36953199 -181083959 + MLT1A1 LTR MaLR 52 352 -13 21 0 0 0 chr3 36953547 36953568 -181083590 + AT_rich Low_complexity Low_complexity 1 21 0 1979 148 0 0 chr3 36953568 36953859 -181083299 - AluSx SINE Alu -21 291 1 2057 152 0 0 chr3 36954104 36954400 -181082758 - AluSx SINE Alu -16 296 1 276 281 34 34 chr3 36955037 36955126 -181082032 + MIR3 SINE MIR 111 199 -9 8055 188 36 13 chr3 36955205 36957765 -181079393 - L1MA9 LINE L1 -5 6307 3682 182 267 395 0 chr3 36958100 36958186 -181078972 - MIR SINE MIR -19 243 124 405 242 188 31 chr3 36958706 36958929 -181078229 + MER112 DNA MER1_type 2 259 -1 439 148 40 69 chr3 36960359 36960460 -181076698 + MER58B DNA MER1_type 244 341 0 379 130 58 0 chr3 36960832 36960901 -181076257 + AluJ/FRAM SINE Alu 230 302 0 22 80 0 0 chr3 36962080 36962130 -181075028 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr3 36962425 36962451 -181074707 + AT_rich Low_complexity Low_complexity 1 26 0 357 214 126 0 chr3 36962727 36962830 -181074328 + MER103 DNA DNA 5 120 -46 182 281 31 31 chr3 36964002 36964066 -181073092 + L3 LINE CR1 1493 1556 -21 22 70 0 0 chr3 36967292 36967335 -181069823 + AT_rich Low_complexity Low_complexity 1 43 0 2068 116 10 0 chr3 36967960 36968254 -181068904 - AluSq SINE Alu -16 297 1 681 249 71 0 chr3 36969704 36969873 -181067285 + MIR SINE MIR 37 217 -45 206 32 32 0 chr3 36970408 36970439 -181066719 + (CA)n Simple_repeat Simple_repeat 1 32 0 581 320 6 11 chr3 36970552 36970730 -181066428 - MIR SINE MIR -40 222 46 303 280 60 28 chr3 36972024 36972206 -181064952 + MER5A DNA MER1_type 1 188 -1 498 246 262 6 chr3 36972903 36973086 -181064072 - MIR SINE MIR -12 250 21 365 292 99 18 chr3 36973194 36973365 -181063793 - MIR SINE MIR -32 230 46 302 315 116 79 chr3 36974058 36974299 -181062859 - MIR SINE MIR -5 257 8 359 321 106 7 chr3 36974301 36974455 -181062703 - MIR SINE MIR -33 175 1 21 36 0 0 chr3 36975930 36975958 -181061200 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 36977921 36977946 -181059212 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 36978024 36978048 -181059110 + AT_rich Low_complexity Low_complexity 1 24 0 369 0 0 0 chr3 36978910 36978951 -181058207 + (CA)n Simple_repeat Simple_repeat 1 41 0 514 276 49 72 chr3 36979028 36979292 -181057866 + Charlie2 DNA MER1_type 1 258 -2524 1699 223 129 43 chr3 36979292 36979685 -181057473 + Charlie2 DNA MER1_type 1856 2214 -648 1869 153 3 3 chr3 36979685 36979980 -181057178 + AluSx SINE Alu 1 295 -17 1699 223 129 43 chr3 36979980 36980331 -181056827 + Charlie2 DNA MER1_type 2214 2664 -198 344 167 45 45 chr3 36980766 36980832 -181056326 - L2 LINE L2 0 3313 3248 13103 53 14 1 chr3 36980950 36982655 -181054503 + L1P LINE L1 3301 5027 -1119 556 245 48 0 chr3 36982757 36982904 -181054254 - L1ME LINE L1 -613 5557 5404 2301 203 35 26 chr3 36982946 36983492 -181053666 - MER74A LTR ERVL -3 555 5 383 267 59 15 chr3 36983568 36983703 -181053455 - L1ME LINE L1 -772 5394 5254 5086 122 50 13 chr3 36983732 36984599 -181052559 - L1PA13 LINE L1 -7 6156 5258 465 170 80 0 chr3 36984645 36984757 -181052401 - L1MB1 LINE L1 -22 6644 6524 * 3014 178 28 14 chr3 36984751 36985792 -181051366 - L1MB1 LINE L1 -348 6318 5269 1027 146 6 12 chr3 36985792 36985963 -181051195 - Tigger4(Zombi) DNA MER2_type -3 2728 2559 345 182 0 0 chr3 36985951 36986017 -181051141 + Tigger4(Zombi) DNA MER2_type 2541 2606 -125 * 604 220 115 11 chr3 36986018 36986200 -181050958 - L1MB1 LINE L1 -1325 5319 5119 269 136 0 0 chr3 36986199 36986243 -181050915 - L1M3 LINE L1 -683 5488 5445 * 320 251 245 10 chr3 36986285 36986411 -181050747 - L1MB1 LINE L1 -3558 3086 2991 2171 86 0 57 chr3 36986411 36986726 -181050432 - AluY SINE Alu -14 297 1 320 251 245 10 chr3 36986726 36986983 -181050175 - L1MB1 LINE L1 -3653 2991 2608 1635 178 80 93 chr3 36989066 36989593 -181047565 - MLT2B1 LTR ERVL 0 520 1 2143 61 14 7 chr3 36989931 36990224 -181046934 - L1PA5 LINE L1 0 6154 5860 6099 193 52 34 chr3 36990346 36991989 -181045169 - L1 LINE L1 -2426 5139 3461 372 43 0 0 chr3 36992466 36992512 -181044646 + (TG)n Simple_repeat Simple_repeat 1 46 0 221 304 38 38 chr3 36993034 36993113 -181044045 + MIR SINE MIR 63 141 -121 428 193 67 52 chr3 36993544 36993679 -181043479 + L1MC4 LINE L1 7745 7881 -161 1975 196 30 25 chr3 36993795 36994193 -181042965 + MLT2D LTR ERVL 7 406 -8 1637 240 71 23 chr3 36994198 36994632 -181042526 + ERVL-D LTR ERVL 2 456 -5308 2468 165 55 8 chr3 36994632 36995524 -181041634 + ERVL-D LTR ERVL 4782 5738 -26 475 267 28 85 chr3 36995525 36995543 -181041615 - L1MB1 LINE L1 -6308 234 217 2026 182 22 27 chr3 36995543 36995956 -181041202 + MLT2D LTR ERVL 1 411 -3 475 267 28 85 chr3 36995956 36996184 -181040974 - L1MB1 LINE L1 -6325 217 2 624 221 0 29 chr3 36996204 36996376 -181040782 + L1MC4 LINE L1 7875 8041 -1 27 0 0 0 chr3 36996498 36996525 -181040633 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr3 36997269 36997294 -181039864 + AT_rich Low_complexity Low_complexity 1 25 0 1157 242 15 74 chr3 36997410 36997803 -181039355 - MLT1A2 LTR MaLR -4 370 1 311 272 34 75 chr3 36997939 36998086 -181039072 + L1M4 LINE L1 3663 3803 -2343 307 206 42 0 chr3 36998715 36998807 -181038351 + L1M4 LINE L1 3855 3950 -2196 1971 122 0 10 chr3 36998950 36999245 -181037913 + AluSx SINE Alu 1 292 -20 490 333 11 6 chr3 36999419 36999596 -181037562 + GA-rich Low_complexity Low_complexity 3 180 0 223 281 0 84 chr3 36999628 36999806 -181037352 + A-rich Low_complexity Low_complexity 2 164 0 228 188 0 0 chr3 36999820 36999852 -181037306 + A-rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 36999880 36999904 -181037254 + AT_rich Low_complexity Low_complexity 1 24 0 394 277 28 66 chr3 37000014 37000227 -181036931 - L1MC/D LINE L1 -1991 5817 5613 275 247 144 10 chr3 37000558 37000655 -181036503 + MIR3 SINE MIR 88 197 -11 216 163 0 0 chr3 37000844 37000887 -181036271 + (TA)n Simple_repeat Simple_repeat 1 43 0 306 0 0 0 chr3 37000888 37000922 -181036236 + (TG)n Simple_repeat Simple_repeat 2 35 0 432 325 68 56 chr3 37000931 37001183 -181035975 + MIR SINE MIR 1 255 -7 7344 37 0 3 chr3 37001301 37002413 -181034745 - L1PA7 LINE L1 -2 6152 5040 2230 167 96 5 chr3 37003716 37004165 -181032993 - LTR54B LTR ERV1 -7 491 2 635 177 41 14 chr3 37004194 37004341 -181032817 - L1ME2 LINE L1 0 6164 6014 1480 135 139 8 chr3 37004410 37004662 -181032496 - AluJb SINE Alu -17 295 11 22 0 0 0 chr3 37006490 37006512 -181030646 + AT_rich Low_complexity Low_complexity 1 22 0 1670 178 0 7 chr3 37006564 37006850 -181030308 + AluJb SINE Alu 2 285 -27 22 0 0 0 chr3 37006964 37006986 -181030172 + AT_rich Low_complexity Low_complexity 1 22 0 277 71 71 0 chr3 37008725 37008795 -181028363 + (TA)n Simple_repeat Simple_repeat 2 76 0 642 231 15 0 chr3 37008919 37009053 -181028105 - MER5A DNA MER1_type -1 188 53 267 311 23 45 chr3 37008941 37009073 -181028085 + MER5A DNA MER1_type 35 163 -26 * 452 213 102 0 chr3 37009167 37009294 -181027864 + MLT1D LTR MaLR 1 140 -365 363 241 86 0 chr3 37009300 37009416 -181027742 + MLT1C LTR MaLR 369 464 -3 246 333 36 18 chr3 37009695 37009806 -181027352 - MIR3 SINE MIR -94 114 2 241 164 148 0 chr3 37010138 37010199 -181026959 - AluSc SINE Alu -4 295 226 43 35 0 0 chr3 37010451 37010508 -181026650 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 37010707 37010737 -181026421 + AT_rich Low_complexity Low_complexity 1 30 0 479 304 66 61 chr3 37010811 37011173 -181025985 - L1MEd LINE L1 -3314 2815 2452 1156 155 60 20 chr3 37011176 37011536 -181025622 - MSTB1 LTR MaLR 0 432 1 269 287 61 6 chr3 37011568 37011732 -181025426 - L1MEd LINE L1 -3708 2421 2249 1756 147 3 38 chr3 37011732 37012054 -181025104 - AluSx SINE Alu 0 315 4 4112 180 67 10 chr3 37012082 37013472 -181023686 - L1MB7 LINE L1 0 6184 4718 456 273 108 6 chr3 37013475 37013651 -181023507 + MLT1H LTR MaLR 41 234 -315 25 31 0 0 chr3 37015134 37015166 -181021992 + AT_rich Low_complexity Low_complexity 1 32 0 1899 164 0 22 chr3 37015402 37015714 -181021444 - AluSx SINE Alu -7 305 1 645 279 29 39 chr3 37015715 37016027 -181021131 - L1MEd LINE L1 -4916 1203 895 889 231 40 44 chr3 37016123 37016421 -181020737 - L1ME3A LINE L1 0 6170 5874 319 356 63 72 chr3 37016695 37017057 -181020101 - L1MEd LINE L1 -5716 403 45 22 0 0 0 chr3 37019783 37019805 -181017353 + AT_rich Low_complexity Low_complexity 1 22 0 2054 125 7 118 chr3 37020166 37020537 -181016621 + MLT1B LTR MaLR 1 317 -73 2086 125 10 0 chr3 37020537 37020842 -181016316 - AluSp SINE Alu -5 308 1 2054 125 7 118 chr3 37020842 37020909 -181016249 + MLT1B LTR MaLR 317 390 0 1147 182 5 5 chr3 37020929 37021138 -181016020 - AluJo SINE Alu -20 292 84 2132 134 61 3 chr3 37021160 37021502 -181015656 + Tigger2a DNA MER2_type 1 362 -72 922 68 0 31 chr3 37021644 37021806 -181015352 + (TA)n Simple_repeat Simple_repeat 2 158 0 366 386 17 6 chr3 37021871 37022047 -181015111 - L2 LINE L2 -708 2606 2429 531 305 47 30 chr3 37022066 37022299 -181014859 - L2 LINE L2 -1311 2003 1767 2351 69 0 28 chr3 37022441 37022760 -181014398 + AluY SINE Alu 1 310 -1 329 123 0 31 chr3 37022967 37023032 -181014126 - L1MB8 LINE L1 -3 6175 6113 219 370 92 8 chr3 37023863 37023982 -181013176 + L2 LINE L2 3143 3271 -1 325 390 35 0 chr3 37024091 37024291 -181012867 + MIR SINE MIR 46 252 -10 21 0 0 0 chr3 37025016 37025037 -181012121 + AT_rich Low_complexity Low_complexity 1 21 0 954 226 30 13 chr3 37025975 37026209 -181010949 + L1PB3 LINE L1 1251 1488 -5077 * 1722 208 25 53 chr3 37026198 37026549 -181010609 + L1PB3 LINE L1 3060 3419 -4146 4357 100 19 11 chr3 37026549 37027218 -181009940 + L1MA1 LINE L1 5623 6297 -5 1722 208 25 53 chr3 37027218 37027857 -181009301 + L1PB3 LINE L1 3419 4019 -3546 5104 182 27 45 chr3 37027868 37028950 -181008208 + L1PB3 LINE L1 5689 6737 -836 1937 123 3 27 chr3 37028950 37029282 -181007876 + AluSx SINE Alu 1 325 0 5104 182 27 45 chr3 37029282 37030102 -181007056 + L1PB3 LINE L1 6737 7570 -3 280 186 44 9 chr3 37030760 37030873 -181006285 + GA-rich Low_complexity Low_complexity 4 120 0 691 153 5 163 chr3 37030875 37031071 -181006087 + MER31B LTR ERV1 1 165 -301 23 0 0 0 chr3 37031073 37031096 -181006062 + AT_rich Low_complexity Low_complexity 1 23 0 864 199 7 0 chr3 37031106 37031257 -181005901 - FRAM SINE Alu -28 148 1 1153 179 96 4 chr3 37031284 37031535 -181005623 + MER31B LTR ERV1 193 466 0 2199 116 3 0 chr3 37031738 37032039 -181005119 + AluSp SINE Alu 5 306 -7 1135 255 111 25 chr3 37032055 37032451 -181004707 - L1ME3A LINE L1 -33 6137 5708 42587 49 9 3 chr3 37032461 37038023 -180999135 + L1P2 LINE L1 2 5582 -573 796 76 0 0 chr3 37038023 37038120 -180999038 + L1PA2 LINE L1 6050 6154 -1 1985 127 25 3 chr3 37038120 37038434 -180998724 + L1P5 LINE L1 5465 5785 -366 451 152 200 16 chr3 37038459 37038584 -180998574 - L1ME3A LINE L1 -479 5691 5544 24 0 0 0 chr3 37038864 37038888 -180998270 + GC_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 37038938 37038964 -180998194 + GC_rich Low_complexity Low_complexity 1 26 0 396 0 0 0 chr3 37038983 37039027 -180998131 + (A)n Simple_repeat Simple_repeat 1 44 0 1878 207 78 2 chr3 37039027 37039501 -180997657 + L1MB3 LINE L1 4549 5058 -1088 2009 165 30 2 chr3 37039507 37039900 -180997258 + L1MB3 LINE L1 5778 6181 -2 344 261 56 53 chr3 37040215 37040343 -180996815 + MER5B DNA MER1_type 60 189 0 443 313 111 29 chr3 37041077 37041320 -180995838 + MLT1I LTR MaLR 1 263 -146 274 302 87 23 chr3 37041444 37041616 -180995542 - MIR SINE MIR -73 189 7 983 249 19 46 chr3 37042346 37042470 -180994688 + MIR SINE MIR 7 133 -129 1984 108 0 37 chr3 37042470 37042790 -180994368 - AluSg SINE Alu 0 309 1 983 249 19 46 chr3 37042790 37042924 -180994234 + MIR SINE MIR 133 260 -2 300 27 0 0 chr3 37043994 37044031 -180993127 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2594 23 7 0 chr3 37044034 37044338 -180992820 - AluY SINE Alu -5 306 1 10792 142 10 1 chr3 37044664 37047265 -180989893 - L1PA11 LINE L1 -1 6173 3553 402 128 0 26 chr3 37048057 37048135 -180989023 - L1MB2 LINE L1 -7 6164 6089 679 246 96 5 chr3 37048334 37048533 -180988625 + MIR SINE MIR 12 228 -34 333 290 129 0 chr3 37048721 37048814 -180988344 - MIR SINE MIR -139 123 19 213 116 70 0 chr3 37049167 37049210 -180987948 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2377 87 0 0 chr3 37049283 37049594 -180987564 + AluY SINE Alu 1 311 0 506 268 112 32 chr3 37051832 37052082 -180985076 - L2 LINE L2 0 3313 3044 219 288 88 0 chr3 37052069 37052149 -180985009 - L3b LINE CR1 -137 1446 1360 * 37 0 0 0 chr3 37053622 37053659 -180983499 + AT_rich Low_complexity Low_complexity 1 37 0 826 191 14 0 chr3 37053895 37054042 -180983116 + FRAM SINE Alu 8 156 -20 365 183 0 20 chr3 37054042 37054195 -180982963 + GA-rich Low_complexity Low_complexity 1 150 0 27 29 0 0 chr3 37054310 37054344 -180982814 + AT_rich Low_complexity Low_complexity 1 34 0 292 267 64 85 chr3 37055797 37056042 -180981116 + L1MC/D LINE L1 4099 4348 -1798 3024 146 2 18 chr3 37056042 37056550 -180980608 + L1PA15 LINE L1 5665 6164 -1 292 267 64 85 chr3 37056550 37056712 -180980446 + L1MC/D LINE L1 4348 4495 -1651 2114 134 3 0 chr3 37056712 37057018 -180980140 + AluSx SINE Alu 3 309 -3 292 267 64 85 chr3 37057018 37057125 -180980033 + L1MC/D LINE L1 4495 4603 -1543 332 309 86 30 chr3 37057402 37057635 -180979523 + L1MC/D LINE L1 5127 5372 -774 1232 147 0 0 chr3 37057643 37057832 -180979326 + L1MA2 LINE L1 1252 1750 -5815 15596 151 27 23 chr3 37057954 37060593 -180976565 + L1MA2 LINE L1 1685 4311 -3412 2064 113 10 13 chr3 37060593 37060893 -180976265 + AluSc SINE Alu 1 299 -10 15596 151 27 23 chr3 37060893 37063574 -180973584 + L1MA2 LINE L1 4311 7046 -677 1958 157 3 0 chr3 37063574 37063873 -180973285 + AluSx SINE Alu 1 300 -12 15596 151 27 23 chr3 37063873 37064555 -180972603 + L1MA2 LINE L1 7046 7723 0 690 290 46 29 chr3 37064568 37064916 -180972242 + L1MC/D LINE L1 5458 5811 -1997 315 0 0 0 chr3 37064967 37065002 -180972156 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 210 150 0 chr3 37065034 37065134 -180972024 + L2 LINE L2 2218 2332 -982 216 0 0 0 chr3 37065179 37065203 -180971955 + (TTG)n Simple_repeat Simple_repeat 1 24 0 318 164 27 27 chr3 37065303 37065376 -180971782 - AluJ/FLAM SINE Alu -229 73 1 1798 297 79 24 chr3 37065378 37066246 -180970912 + L2 LINE L2 2356 3263 -50 28 86 0 0 chr3 37066316 37066386 -180970772 + AT_rich Low_complexity Low_complexity 1 70 0 3019 103 0 6 chr3 37066782 37067250 -180969908 - MER1A DNA MER1_type 0 529 25 23 54 0 0 chr3 37068077 37068114 -180969044 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr3 37068214 37068243 -180968915 + AT_rich Low_complexity Low_complexity 1 29 0 420 266 108 0 chr3 37068277 37068416 -180968742 - MIR SINE MIR -13 249 96 1014 180 0 6 chr3 37068466 37068644 -180968514 - AluSg/x SINE Alu -2 310 134 5680 86 21 57 chr3 37069763 37071088 -180966070 - L1PA13 LINE L1 -8 6155 4890 1768 105 0 4 chr3 37071088 37071326 -180965832 - AluSg/x SINE Alu -2 308 72 5680 86 21 57 chr3 37071326 37071419 -180965739 - L1PA13 LINE L1 -1273 4890 4795 2190 88 3 0 chr3 37071475 37071760 -180965398 - AluSx SINE Alu -11 301 16 6981 226 52 22 chr3 37072198 37076294 -180960864 - L1MC1 LINE L1 -34 6579 2254 9919 169 99 21 chr3 37076323 37076941 -180960217 - L1MC1 LINE L1 -4057 2369 1800 1796 149 38 0 chr3 37076941 37077229 -180959929 + AluJb SINE Alu 1 299 -13 9919 169 99 21 chr3 37077229 37078807 -180958351 - L1MC1 LINE L1 -4626 1800 3 1688 162 59 37 chr3 37079535 37079943 -180957215 + Looper DNA T2_type 1 417 -1141 414 57 0 0 chr3 37080000 37080053 -180957105 + (CA)n Simple_repeat Simple_repeat 1 53 0 211 318 36 36 chr3 37080081 37080191 -180956967 - MIR SINE MIR -10 252 143 5175 127 27 1 chr3 37080192 37081122 -180956036 + L1PA15 LINE L1 5142 6161 -4 28 29 0 0 chr3 37081226 37081261 -180955897 + AT_rich Low_complexity Low_complexity 1 35 0 321 319 168 22 chr3 37081920 37082105 -180955053 + MIR SINE MIR 24 235 -27 243 161 0 0 chr3 37083438 37083494 -180953664 + T-rich Low_complexity Low_complexity 1 56 0 7897 11 0 0 chr3 37083498 37084880 -180952278 - L1PA2 LINE L1 -2 6153 4772 5795 19 0 0 chr3 37084880 37085556 -180951602 + L1PA2 LINE L1 4095 4770 -1376 1161 209 85 26 chr3 37085835 37086141 -180951017 + MER5C DNA MER1_type 1 324 0 197 306 28 14 chr3 37086769 37086841 -180950317 - MIR SINE MIR -109 153 81 296 303 178 14 chr3 37087071 37087279 -180949879 - MIR SINE MIR -1 261 20 261 281 118 85 chr3 37087492 37087738 -180949420 + MIR SINE MIR 2 255 -7 279 0 0 0 chr3 37088073 37088104 -180949054 + (TG)n Simple_repeat Simple_repeat 2 32 0 255 263 0 0 chr3 37088104 37088184 -180948974 + (TA)n Simple_repeat Simple_repeat 2 81 0 1950 115 4 0 chr3 37088316 37088586 -180948572 + AluSx SINE Alu 1 271 -41 450 0 0 0 chr3 37088613 37088663 -180948495 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1699 154 0 18 chr3 37089082 37089354 -180947804 + AluJo SINE Alu 1 267 -45 2510 143 46 10 chr3 37089610 37090023 -180947135 - MSTA LTR MaLR 0 428 1 2295 109 0 0 chr3 37090211 37090514 -180946644 + AluSx SINE Alu 1 303 -9 183 129 0 0 chr3 37090547 37090578 -180946580 + (T)n Simple_repeat Simple_repeat 1 31 0 236 278 113 31 chr3 37091320 37091417 -180945741 - MER5B DNA MER1_type -73 105 1 202 196 0 39 chr3 37091687 37091738 -180945420 + L2 LINE L2 3264 3312 -1 2214 74 10 20 chr3 37092348 37092645 -180944513 - AluY SINE Alu -3 308 15 21 0 0 0 chr3 37092682 37092703 -180944455 + AT_rich Low_complexity Low_complexity 1 21 0 956 192 98 5 chr3 37092818 37093021 -180944137 + MER58A DNA MER1_type 2 223 -1 268 281 67 14 chr3 37094258 37094379 -180942779 + MIR SINE MIR 25 138 -124 2041 40 0 8 chr3 37094379 37094629 -180942529 + L1PA5 LINE L1 5901 6148 -6 268 281 67 14 chr3 37094629 37094687 -180942471 + MIR SINE MIR 138 262 0 26 50 0 0 chr3 37095755 37095795 -180941363 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 37097484 37097512 -180939646 + AT_rich Low_complexity Low_complexity 1 28 0 186 368 84 0 chr3 37097580 37097675 -180939483 + MER5B DNA MER1_type 4 106 -72 278 363 10 10 chr3 37098279 37098381 -180938777 - MIR SINE MIR -160 102 1 189 247 71 149 chr3 37098381 37098457 -180938701 + MIR3 SINE MIR 94 157 -51 263 216 45 11 chr3 37098424 37098512 -180938646 + MIR SINE MIR 122 212 -50 14629 90 5 6 chr3 37099164 37102032 -180935126 - L1PA7 LINE L1 -6 6148 3301 3523 77 0 0 chr3 37102032 37102486 -180934672 + L1PA7 LINE L1 5652 6105 -49 2471 56 0 0 chr3 37202532 37202820 -180834338 - AluY SINE Alu -23 288 1 1000 217 14 9 chr3 37202824 37203041 -180834117 - AluJo SINE Alu -10 302 85 1509 204 10 10 chr3 37203072 37203249 -180833909 - AluJb SINE Alu 0 312 133 1363 240 10 3 chr3 37203249 37203549 -180833609 - AluSg1 SINE Alu -7 302 1 1509 204 10 10 chr3 37203549 37203670 -180833488 - AluJb SINE Alu -178 134 14 2064 110 48 14 chr3 37203841 37204131 -180833027 + AluSx SINE Alu 1 300 -12 2239 120 0 3 chr3 37204136 37204445 -180832713 + AluSx SINE Alu 1 308 -4 603 229 76 0 chr3 37204457 37204601 -180832557 + FRAM SINE Alu 1 155 -21 1332 209 77 33 chr3 37204601 37205031 -180832127 + L1MB4 LINE L1 5598 6046 -134 2159 110 0 17 chr3 37205140 37205440 -180831718 + AluSq SINE Alu 2 296 -17 25 0 0 0 chr3 37205561 37205586 -180831572 + AT_rich Low_complexity Low_complexity 1 25 0 185 213 106 0 chr3 37206251 37206298 -180830860 - L2 LINE L2 -5 3308 3257 188 306 56 14 chr3 37206457 37206529 -180830629 - L2 LINE L2 -2 3311 3237 2331 53 0 0 chr3 37206813 37207102 -180830056 + AluY SINE Alu 18 306 0 1128 192 77 86 chr3 37207413 37207631 -180829527 + L1MB8 LINE L1 5827 6045 -133 2438 83 3 10 chr3 37207631 37207944 -180829214 - AluY SINE Alu 0 311 1 2335 105 0 7 chr3 37207945 37208251 -180828907 - AluSx SINE Alu -8 304 1 1128 192 77 86 chr3 37208251 37208379 -180828779 + L1MB8 LINE L1 6044 6172 -6 225 382 7 15 chr3 37208468 37208604 -180828554 - MIR SINE MIR -36 226 92 1283 89 30 0 chr3 37208815 37208983 -180828175 - AluY SINE Alu -126 185 13 835 130 0 0 chr3 37208999 37209114 -180828044 + AluJb SINE Alu 178 292 -20 444 214 58 19 chr3 37209127 37209230 -180827928 - FLAM_A SINE Alu -32 110 4 5035 28 0 4 chr3 37209532 37210075 -180827083 - SVA Other Other 0 1386 846 1459 167 16 4 chr3 37210176 37210421 -180826737 - AluSx SINE Alu -64 248 1 461 172 255 0 chr3 37210770 37210914 -180826244 - MER58B DNA MER1_type 0 341 45 998 135 0 27 chr3 37210922 37211070 -180826088 + AluJo SINE Alu 1 144 -168 198 0 0 0 chr3 37211074 37211096 -180826062 + (A)n Simple_repeat Simple_repeat 1 22 0 1446 108 0 5 chr3 37211104 37211289 -180825869 + AluSq SINE Alu 2 185 -128 1661 90 0 5 chr3 37211389 37211601 -180825557 + AluSx SINE Alu 59 269 -43 2309 80 3 3 chr3 37211925 37212213 -180824945 + AluSq SINE Alu 4 291 -22 2060 114 3 17 chr3 37212223 37212522 -180824636 + AluSx SINE Alu 1 295 -17 1348 162 0 0 chr3 37212832 37213036 -180824122 + AluSp SINE Alu 105 308 -5 568 187 14 29 chr3 37213036 37213175 -180823983 - L1MC3 LINE L1 -37 7748 7612 1291 156 0 0 chr3 37213175 37213367 -180823791 + AluJo SINE Alu 104 295 -17 2260 97 10 7 chr3 37213369 37213669 -180823489 + AluSx SINE Alu 1 301 -11 2458 84 3 3 chr3 37214101 37214411 -180822747 + AluSx SINE Alu 1 310 -2 290 297 72 0 chr3 37214475 37214586 -180822572 + MLT1K LTR MaLR 168 286 -302 477 263 60 65 chr3 37214673 37214890 -180822268 + MLT1K LTR MaLR 346 561 -27 1488 123 0 31 chr3 37214979 37215206 -180821952 - AluSg/x SINE Alu 0 310 91 1761 164 21 3 chr3 37215208 37215494 -180821664 - AluJb SINE Alu -15 297 7 1058 63 8 0 chr3 37215816 37215943 -180821215 + AluY SINE Alu 3 130 -181 1098 179 56 0 chr3 37215971 37216166 -180820992 - AluJb SINE Alu -22 290 85 2093 128 42 0 chr3 37216580 37216869 -180820289 + AluSx SINE Alu 1 301 -11 2592 74 0 0 chr3 37216869 37217180 -180819978 + AluY SINE Alu 1 311 0 285 186 0 58 chr3 37217228 37217314 -180819844 + L1MEd LINE L1 22 102 -6017 455 200 0 0 chr3 37217803 37217883 -180819275 - AluJb SINE Alu -96 216 137 1697 182 7 0 chr3 37217883 37218169 -180818989 - AluSq SINE Alu -4 309 22 2273 72 0 0 chr3 37218586 37218876 -180818282 - AluSg SINE Alu 0 311 22 421 192 198 0 chr3 37218898 37219042 -180818116 - MER5A DNA MER1_type -9 180 4 570 250 22 67 chr3 37219062 37219186 -180817972 + MER5B DNA MER1_type 1 116 -62 2167 111 17 3 chr3 37219186 37219474 -180817684 - AluSg SINE Alu -18 292 1 570 250 22 67 chr3 37219474 37219529 -180817629 + MER5B DNA MER1_type 116 172 -6 273 309 41 8 chr3 37219535 37219658 -180817500 - MIR3 SINE MIR -49 159 33 2498 66 0 10 chr3 37220395 37220699 -180816459 - AluY SINE Alu -10 301 1 1144 148 0 0 chr3 37220702 37220871 -180816287 - FRAM SINE Alu -12 164 1 1200 160 104 76 chr3 37221215 37221503 -180815655 + AluJb SINE Alu 1 296 -16 1861 144 10 17 chr3 37221755 37221891 -180815267 + AluJb SINE Alu 1 136 -176 2072 130 10 0 chr3 37221891 37222190 -180814968 + AluSg1 SINE Alu 1 302 -7 1861 144 10 17 chr3 37222190 37222345 -180814813 + AluJb SINE Alu 136 290 -22 2298 79 10 3 chr3 37222465 37222756 -180814402 - AluSg SINE Alu -17 293 1 2370 84 3 0 chr3 37223009 37223308 -180813850 + AluY SINE Alu 1 300 -11 2187 114 3 0 chr3 37224237 37224536 -180812622 + AluY SINE Alu 1 300 -11 1055 192 61 12 chr3 37224647 37224892 -180812266 - MER33 DNA MER1_type -67 257 1 2308 120 3 0 chr3 37225177 37225485 -180811673 - AluSg SINE Alu -1 309 1 236 30 30 0 chr3 37225554 37225587 -180811571 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1990 116 18 11 chr3 37225593 37225868 -180811290 - AluSx SINE Alu -35 277 1 1594 161 0 0 chr3 37225932 37226174 -180810984 - AluJb SINE Alu -70 242 1 441 36 0 0 chr3 37226894 37226949 -180810209 + (GGCTG)n Simple_repeat Simple_repeat 4 58 0 619 185 0 0 chr3 37227116 37227224 -180809934 - FLAM_C SINE Alu -34 109 2 318 254 101 0 chr3 37227225 37227363 -180809795 - L1 LINE L1 -814 5332 5181 2105 122 0 28 chr3 37227367 37227688 -180809470 - AluSx SINE Alu 0 312 1 2273 94 7 10 chr3 37227729 37227901 -180809257 - AluY SINE Alu -5 306 134 2783 32 0 0 chr3 37227901 37228210 -180808948 - AluY SINE Alu -2 309 1 2273 94 7 10 chr3 37228210 37228344 -180808814 - AluY SINE Alu -177 134 1 1123 126 0 63 chr3 37228480 37228655 -180808503 - AluSx SINE Alu -148 164 1 1074 162 106 0 chr3 37228952 37229115 -180808043 - AluSg/x SINE Alu -8 304 115 405 0 0 0 chr3 37229115 37229160 -180807998 + (TG)n Simple_repeat Simple_repeat 2 46 0 1074 162 106 0 chr3 37229160 37229194 -180807964 - AluSg/x SINE Alu -197 115 86 2138 110 0 17 chr3 37229363 37229664 -180807494 - AluSx SINE Alu -16 296 1 503 213 26 18 chr3 37231647 37231764 -180805394 + L1MB5 LINE L1 6005 6113 -71 2237 101 0 26 chr3 37231764 37232072 -180805086 - AluSx SINE Alu -12 300 1 503 213 26 18 chr3 37232072 37232093 -180805065 + L1MB5 LINE L1 6113 6132 -52 701 218 106 12 chr3 37232120 37232319 -180804839 - MLT1A2 LTR MaLR -11 404 186 2366 63 3 3 chr3 37232320 37232607 -180804551 - AluY SINE Alu -24 287 1 310 111 0 0 chr3 37232608 37232653 -180804505 - MLT1A2 LTR MaLR -329 45 1 1196 129 0 0 chr3 37232674 37232837 -180804321 - AluSg/x SINE Alu -13 299 137 2498 87 0 3 chr3 37233132 37233443 -180803715 - AluSg SINE Alu 0 310 1 2286 101 14 0 chr3 37235048 37235345 -180801813 - AluSg SINE Alu -9 301 1 665 153 15 44 chr3 37235708 37235845 -180801313 + FLAM_C SINE Alu 1 133 0 1233 114 10 13 chr3 37235951 37236199 -180800959 + AluSx SINE Alu 89 300 -10 1808 142 7 14 chr3 37236199 37236481 -180800677 + AluSx SINE Alu 1 280 -32 320 149 0 0 chr3 37236936 37236983 -180800175 - U6 snRNA snRNA -60 47 1 2286 108 0 13 chr3 37237143 37237457 -180799701 - AluSx SINE Alu -2 310 1 517 208 15 69 chr3 37237599 37237729 -180799429 - L2 LINE L2 -4 3309 3187 531 99 59 40 chr3 37238205 37238306 -180798852 - FLAM_C SINE Alu -18 125 23 523 68 0 40 chr3 37238558 37238632 -180798526 + Charlie3 DNA MER1_type 2636 2706 -4 403 123 0 0 chr3 37238961 37239026 -180798132 - Alu SINE Alu -1 299 235 393 185 37 0 chr3 37239043 37239124 -180798034 + FAM SINE Alu 91 174 -1 463 86 29 0 chr3 37239150 37239220 -180797938 + AluSp SINE Alu 37 108 -205 2170 113 3 0 chr3 37239361 37239652 -180797506 - AluSg SINE Alu -18 292 1 1531 199 21 3 chr3 37239652 37239934 -180797224 - AluJo SINE Alu -15 297 11 1681 161 16 39 chr3 37239962 37240273 -180796885 - AluJo SINE Alu -2 310 7 1070 77 0 0 chr3 37240324 37240454 -180796704 - AluSg/x SINE Alu -12 300 171 1715 106 0 30 chr3 37240454 37240560 -180796598 - AluSx SINE Alu -81 231 123 2228 114 0 19 chr3 37240560 37240876 -180796282 - AluSg SINE Alu 0 310 1 1715 106 0 30 chr3 37240876 37241005 -180796153 - AluSx SINE Alu -189 123 3 403 286 91 15 chr3 37241690 37241889 -180795269 + L2 LINE L2 1776 1989 -1325 2273 116 0 0 chr3 37241889 37242191 -180794967 - AluSg SINE Alu -8 302 1 2261 110 10 0 chr3 37242428 37242728 -180794430 + AluSx SINE Alu 1 303 -9 6024 52 28 9 chr3 37242729 37243504 -180793654 + SVA Other Other 5 794 -592 2148 101 13 20 chr3 37243816 37244122 -180793036 - AluSq SINE Alu -4 309 6 2441 93 0 0 chr3 37244232 37244532 -180792626 - AluSg SINE Alu -10 300 1 2381 82 0 10 chr3 37244555 37244858 -180792300 - AluSx SINE Alu -12 300 1 596 172 0 97 chr3 37244922 37244996 -180792162 + FLAM_A SINE Alu 2 57 -245 1668 181 31 0 chr3 37244996 37245284 -180791874 - AluSx SINE Alu -15 297 1 596 172 0 97 chr3 37245284 37245354 -180791804 + FLAM_A SINE Alu 57 132 -170 1451 215 29 26 chr3 37245354 37245665 -180791493 + AluJo SINE Alu 1 312 0 601 148 85 170 chr3 37246089 37246139 -180791019 + AluJo SINE Alu 86 139 -173 2185 121 0 16 chr3 37246139 37246452 -180790706 + AluY SINE Alu 2 309 -2 601 148 85 170 chr3 37246452 37246479 -180790679 + AluJo SINE Alu 139 167 -145 2193 77 23 40 chr3 37246479 37246779 -180790379 + AluY SINE Alu 1 295 -16 601 148 85 170 chr3 37246779 37246923 -180790235 + AluJo SINE Alu 167 289 -23 390 291 26 8 chr3 37248030 37248147 -180789011 - FLAM_A SINE Alu -7 126 8 2348 94 0 10 chr3 37248177 37248484 -180788674 + AluY SINE Alu 1 304 -7 1917 140 3 3 chr3 37248496 37248782 -180788376 + AluY SINE Alu 1 286 -25 2458 57 3 7 chr3 37249053 37249349 -180787809 - AluY SINE Alu -16 295 1 612 171 54 31 chr3 37249353 37249482 -180787676 - AluSq/x SINE Alu -179 133 2 563 93 23 0 chr3 37249793 37249879 -180787279 + AluY SINE Alu 16 103 -208 299 242 290 11 chr3 37250050 37250205 -180786953 + MIR SINE MIR 11 121 -141 2173 124 13 0 chr3 37250205 37250511 -180786647 + AluSx SINE Alu 1 310 -2 299 242 290 11 chr3 37250511 37250541 -180786617 + MIR SINE MIR 121 248 -14 454 111 0 0 chr3 37250668 37250731 -180786427 + AluJ/FLAM SINE Alu 4 66 -246 324 148 0 0 chr3 37250824 37250878 -180786280 + AluJ/FRAM SINE Alu 216 269 -33 357 24 0 0 chr3 37251297 37251339 -180785819 + (CA)n Simple_repeat Simple_repeat 1 42 0 341 357 0 0 chr3 37253624 37253722 -180783436 + L1MC4 LINE L1 6605 6702 -1340 * 352 186 21 103 chr3 37253695 37253792 -180783366 - L1MC4 LINE L1 -1339 6703 6615 244 322 0 0 chr3 37253793 37253883 -180783275 - L1MC4 LINE L1 -1339 6703 6614 267 250 79 0 chr3 37253883 37253959 -180783199 + (CGTA)n Simple_repeat Simple_repeat 4 85 0 233 259 47 0 chr3 37253962 37254047 -180783111 - L1MC4 LINE L1 -1340 6702 6614 249 196 0 0 chr3 37254049 37254100 -180783058 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 2280 102 0 0 chr3 37254100 37254384 -180782774 - AluSg SINE Alu -26 284 1 2223 110 0 3 chr3 37254405 37254706 -180782452 - AluSx SINE Alu -12 300 1 630 122 0 0 chr3 37254819 37254917 -180782241 + AluSp/q SINE Alu 203 300 -13 1164 72 6 18 chr3 37254918 37255084 -180782074 - THE1C LTR MaLR -211 164 1 221 319 14 0 chr3 37255085 37255154 -180782004 - MIR SINE MIR -80 182 113 2135 143 0 0 chr3 37255227 37255527 -180781631 + AluSx SINE Alu 1 300 -12 270 319 0 6 chr3 37256359 37256528 -180780630 + G-rich Low_complexity Low_complexity 3 170 0 371 268 0 17 chr3 37256571 37256932 -180780226 + G-rich Low_complexity Low_complexity 1 354 0 331 307 0 6 chr3 37256956 37257132 -180780026 + G-rich Low_complexity Low_complexity 2 176 0 220 319 0 0 chr3 37257156 37257275 -180779883 + G-rich Low_complexity Low_complexity 3 121 0 312 302 0 6 chr3 37257318 37257487 -180779671 + G-rich Low_complexity Low_complexity 2 169 0 2149 134 0 0 chr3 37257762 37258052 -180779106 + AluSx SINE Alu 1 290 -22 2408 93 3 7 chr3 37258054 37258364 -180778794 + AluY SINE Alu 1 309 -2 183 305 0 34 chr3 37258379 37258438 -180778720 + MIR SINE MIR 204 260 -2 393 143 14 29 chr3 37259384 37259454 -180777704 - AluJ/FLAM SINE Alu -233 69 1 625 261 38 0 chr3 37259461 37259618 -180777540 - FAM SINE Alu -12 163 1 1103 165 42 24 chr3 37259651 37259863 -180777295 + AluY SINE Alu 84 299 -12 2283 82 6 32 chr3 37259863 37260178 -180776980 + AluSp SINE Alu 1 307 -6 2507 58 7 0 chr3 37260187 37260481 -180776677 + AluY SINE Alu 1 296 -15 1151 81 0 0 chr3 37261247 37261383 -180775775 - AluSc SINE Alu -173 136 1 2519 50 0 7 chr3 37261911 37262213 -180774945 - AluY SINE Alu -11 300 1 2293 106 0 25 chr3 37262917 37263237 -180773921 - AluSx SINE Alu 0 312 1 2591 49 0 7 chr3 37264176 37264483 -180772675 - AluY SINE Alu -6 305 1 189 371 57 19 chr3 37264551 37264656 -180772502 - L3 LINE CR1 -1222 355 247 2084 90 6 56 chr3 37265236 37265559 -180771599 - AluSq SINE Alu -6 307 1 2414 77 7 0 chr3 37265580 37265878 -180771280 - AluY SINE Alu -11 300 1 185 174 0 22 chr3 37267119 37267165 -180769993 + G-rich Low_complexity Low_complexity 5 49 0 21 0 0 0 chr3 37267700 37267721 -180769437 + AT_rich Low_complexity Low_complexity 1 21 0 2594 51 0 0 chr3 37268701 37268995 -180768163 - AluY SINE Alu -17 294 1 310 111 0 0 chr3 37268996 37269041 -180768117 - MLT1A2 LTR MaLR -329 45 1 2313 110 0 0 chr3 37269062 37269361 -180767797 - AluSx SINE Alu -13 299 1 365 237 102 100 chr3 37270245 37270295 -180766863 - L1ME4a LINE L1 -1 6120 6072 2181 106 18 0 chr3 37270295 37270579 -180766579 + AluSq SINE Alu 1 289 -24 365 237 102 100 chr3 37270579 37270938 -180766220 - L1ME4a LINE L1 -49 6072 5710 348 43 0 0 chr3 37271036 37271082 -180766076 + (TG)n Simple_repeat Simple_repeat 2 47 0 209 257 99 134 chr3 37271663 37271798 -180765360 - MER5B DNA MER1_type -8 170 41 396 0 0 0 chr3 37271798 37271842 -180765316 + (TG)n Simple_repeat Simple_repeat 2 45 0 209 257 99 134 chr3 37271842 37271877 -180765281 - MER5B DNA MER1_type -137 41 6 2493 44 14 0 chr3 37271891 37272186 -180764972 - AluSq SINE Alu -14 299 1 1472 139 18 118 chr3 37272328 37272467 -180764691 + AluJb SINE Alu 1 90 -222 2555 62 0 0 chr3 37272467 37272772 -180764386 + AluY SINE Alu 1 305 -6 1472 139 18 118 chr3 37272772 37272963 -180764195 + AluJb SINE Alu 90 298 -14 554 126 11 32 chr3 37273249 37273344 -180763814 - AluSq SINE Alu -144 169 77 222 265 83 62 chr3 37273406 37273608 -180763550 + MIR SINE MIR 3 205 -57 295 206 59 0 chr3 37273820 37273888 -180763270 + MER5A DNA MER1_type 117 188 -1 180 0 0 0 chr3 37273914 37273934 -180763224 + (TC)n Simple_repeat Simple_repeat 2 21 0 2360 77 3 0 chr3 37273934 37274220 -180762938 - AluSx SINE Alu -25 287 1 914 249 57 44 chr3 37274221 37274527 -180762631 - L1M4 LINE L1 -941 5205 4891 2363 100 0 7 chr3 37274527 37274837 -180762321 - AluSx SINE Alu -4 308 1 914 249 57 44 chr3 37274837 37274935 -180762223 - L1M4 LINE L1 -1255 4891 4796 1306 89 0 0 chr3 37274935 37275103 -180762055 - AluYa5 SINE Alu -8 303 136 1114 210 25 43 chr3 37275105 37275251 -180761907 - L1M4 LINE L1 -1339 4807 4660 2254 110 0 0 chr3 37275251 37275550 -180761608 - AluSx SINE Alu -13 299 1 1114 210 25 43 chr3 37275550 37275727 -180761431 - L1M4 LINE L1 -1486 4660 4490 1505 169 3 41 chr3 37275855 37275897 -180761261 + L1M3 LINE L1 5449 5491 -680 2338 91 7 0 chr3 37275897 37276193 -180760965 + AluY SINE Alu 1 298 -13 1637 170 35 14 chr3 37276198 37276486 -180760672 + AluJb SINE Alu 1 294 -18 2146 106 0 3 chr3 37276491 37276819 -180760339 + AluSx SINE Alu 1 327 0 1505 169 3 41 chr3 37276819 37277058 -180760100 + L1M3 LINE L1 5499 5732 -439 2104 127 0 3 chr3 37277058 37277365 -180759793 + AluSp SINE Alu 1 306 -7 186 212 242 0 chr3 37277367 37277433 -180759725 + MIR SINE MIR 170 251 -11 185 200 0 0 chr3 37277405 37277440 -180759718 + L2 LINE L2 3269 3303 -10 * 1919 73 0 13 chr3 37277440 37277673 -180759485 + AluSq SINE Alu 1 230 -83 394 245 31 87 chr3 37278017 37278058 -180759100 + MIR SINE MIR 68 110 -152 2393 94 0 7 chr3 37278058 37278367 -180758791 - AluSx SINE Alu -5 307 1 394 245 31 87 chr3 37278367 37278521 -180758637 + MIR SINE MIR 110 252 -10 1166 59 0 0 chr3 37279019 37279154 -180758004 + AluSq/x SINE Alu 1 135 -177 2199 100 13 19 chr3 37279154 37279464 -180757694 + AluSx SINE Alu 1 308 -4 1692 128 120 0 chr3 37279527 37279793 -180757365 + AluJo SINE Alu 1 298 -14 226 311 0 0 chr3 37280017 37280091 -180757067 - L1M4 LINE L1 -1428 4718 4645 2502 68 0 10 chr3 37280153 37280464 -180756694 - AluY SINE Alu -3 308 1 2323 114 7 0 chr3 37280474 37280782 -180756376 - AluSg SINE Alu 0 310 1 388 258 24 24 chr3 37280881 37281005 -180756153 + MLT1F LTR MaLR 419 542 0 710 276 47 41 chr3 37281028 37281368 -180755790 + MLT1J2 LTR MaLR 108 449 -1 2367 101 0 0 chr3 37281370 37281676 -180755482 - AluSg SINE Alu -4 306 1 2019 103 4 0 chr3 37281703 37281965 -180755193 - AluSx SINE Alu -49 263 1 430 265 27 27 chr3 37281989 37282136 -180755022 - MIR SINE MIR -46 216 70 349 337 86 11 chr3 37282210 37282397 -180754761 + MIR SINE MIR 52 252 -10 183 179 26 0 chr3 37283007 37283046 -180754112 - MIR SINE MIR -117 145 106 1506 114 59 62 chr3 37283078 37283384 -180753774 - AluY SINE Alu -5 306 2 2330 80 3 10 chr3 37283798 37284099 -180753059 + AluSx SINE Alu 1 299 -13 1156 168 0 0 chr3 37284569 37284742 -180752416 - AluJb SINE Alu -3 309 137 1389 181 0 9 chr3 37284842 37285068 -180752090 - AluJb SINE Alu -88 224 1 6135 159 47 37 chr3 37285070 37285523 -180751635 - Tigger1 DNA MER2_type -1080 1338 891 2251 97 7 10 chr3 37285523 37285821 -180751337 - AluSg SINE Alu -13 297 1 6135 159 47 37 chr3 37285821 37286368 -180750790 - Tigger1 DNA MER2_type -1527 891 351 1771 121 70 4 chr3 37286368 37286625 -180750533 + AluJb SINE Alu 15 288 -24 6135 159 47 37 chr3 37286625 37286644 -180750514 - Tigger1 DNA MER2_type -2067 351 334 2238 93 7 7 chr3 37286644 37286945 -180750213 + AluSp SINE Alu 1 301 -12 6135 159 47 37 chr3 37286945 37287066 -180750092 - Tigger1 DNA MER2_type -2084 334 216 2371 76 0 13 chr3 37287066 37287368 -180749790 + AluY SINE Alu 1 298 -13 6135 159 47 37 chr3 37287368 37287530 -180749628 - Tigger1 DNA MER2_type -2202 216 20 2290 212 73 10 chr3 37287591 37287719 -180749439 - L1MB8 LINE L1 -267 5911 5792 1991 107 27 23 chr3 37287719 37288018 -180749140 + AluSx SINE Alu 1 300 -12 2290 212 73 10 chr3 37288018 37288493 -180748665 - L1MB8 LINE L1 -386 5792 5270 921 149 0 50 chr3 37288601 37288762 -180748396 - FAM SINE Alu -23 162 10 535 259 119 16 chr3 37289636 37289821 -180747337 - MIR SINE MIR -38 224 21 423 142 9 26 chr3 37289999 37290112 -180747046 + GA-rich Low_complexity Low_complexity 1 111 0 583 139 0 10 chr3 37290181 37290282 -180746876 - FLAM_A SINE Alu -8 134 35 1926 144 46 0 chr3 37290612 37290897 -180746261 - AluSx SINE Alu -14 298 1 321 309 138 0 chr3 37290900 37291023 -180746135 - MIR SINE MIR -115 147 8 998 133 0 26 chr3 37291157 37291308 -180745850 + FRAM SINE Alu 11 157 -19 2515 68 0 0 chr3 37291450 37291742 -180745416 + AluSq SINE Alu 1 292 -21 2227 108 3 16 chr3 37292346 37292652 -180744506 + AluSq SINE Alu 1 302 -11 1642 178 4 7 chr3 37292901 37293176 -180743982 + AluJb SINE Alu 16 289 -23 230 324 178 14 chr3 37293762 37293795 -180743363 + MIR SINE MIR 5 31 -231 2189 91 52 0 chr3 37293795 37294082 -180743076 - AluSx SINE Alu -10 302 1 230 324 178 14 chr3 37294082 37294261 -180742897 + MIR SINE MIR 31 252 -10 601 146 68 0 chr3 37294787 37294890 -180742268 + AluSq/x SINE Alu 2 111 -202 2138 109 7 23 chr3 37295169 37295472 -180741686 - AluSx SINE Alu -14 298 1 2217 102 3 29 chr3 37295836 37296151 -180741007 + AluSg SINE Alu 3 309 -1 388 133 0 0 chr3 37296152 37296212 -180740946 - HY3 scRNA scRNA -40 61 2 301 295 93 42 chr3 37296215 37296408 -180740750 - MLT1J LTR MaLR -294 217 15 1025 87 0 0 chr3 37296455 37296582 -180740576 + AluY SINE Alu 167 293 -18 241 343 0 0 chr3 37296596 37296663 -180740495 - L2 LINE L2 -1 3271 3205 182 274 20 0 chr3 37296754 37296805 -180740353 - L2 LINE L2 -252 3061 3010 2407 80 0 0 chr3 37297033 37297334 -180739824 + AluY SINE Alu 1 301 -10 1069 182 0 0 chr3 37297347 37297523 -180739635 + AluJb SINE Alu 137 312 0 322 336 31 0 chr3 37300384 37300512 -180736646 + MER103 DNA DNA 18 149 -17 2241 108 7 0 chr3 37300753 37301049 -180736109 - AluSx SINE Alu -11 301 4 2324 109 0 0 chr3 37302690 37302993 -180734165 - AluSg SINE Alu -7 303 1 2386 67 11 0 chr3 37303107 37303391 -180733767 - AluY SINE Alu -8 303 17 2516 69 0 0 chr3 37303939 37304229 -180732929 + AluSc SINE Alu 1 290 -19 314 281 49 0 chr3 37305141 37305223 -180731935 - L1ME4a LINE L1 -1 6120 6035 2458 81 0 0 chr3 37305236 37305534 -180731624 - AluSx SINE Alu -14 298 1 262 250 98 0 chr3 37305863 37305955 -180731203 - LTR67 LTR ERVL -7 550 450 2197 95 7 7 chr3 37305965 37306260 -180730898 + AluSx SINE Alu 5 299 -13 1227 85 0 0 chr3 37306597 37306750 -180730408 + AluSg/x SINE Alu 149 301 -11 2074 122 3 3 chr3 37307357 37307651 -180729507 + AluSx SINE Alu 1 294 -18 39 0 0 0 chr3 37307977 37308016 -180729142 + GC_rich Low_complexity Low_complexity 1 39 0 2398 63 6 22 chr3 37308259 37308575 -180728583 - AluSx SINE Alu -1 311 1 2253 96 6 13 chr3 37309376 37309690 -180727468 - AluSx SINE Alu 0 312 1 21 36 0 0 chr3 37310505 37310533 -180726625 + GC_rich Low_complexity Low_complexity 1 28 0 2334 89 6 19 chr3 37312777 37313093 -180724065 + AluSx SINE Alu 1 312 0 663 263 29 15 chr3 37313207 37313412 -180723746 + MIR SINE MIR 52 259 -3 1568 131 26 4 chr3 37313959 37314188 -180722970 - AluJb SINE Alu -78 234 1 1875 45 0 9 chr3 37314209 37314433 -180722725 - AluY SINE Alu 0 311 90 2305 82 11 0 chr3 37314533 37314814 -180722344 - AluSx SINE Alu -28 284 1 300 290 18 129 chr3 37314834 37314939 -180722219 - L1 LINE L1 -1678 4468 4353 2654 68 0 0 chr3 37314939 37315246 -180721912 - AluSx SINE Alu -5 307 1 300 290 18 129 chr3 37315246 37315299 -180721859 - L1 LINE L1 -1793 4353 4340 789 145 8 0 chr3 37315299 37315430 -180721728 - FLAM_C SINE Alu -1 132 1 300 290 18 129 chr3 37315430 37315494 -180721664 - L1 LINE L1 -1806 4340 4270 1342 84 0 0 chr3 37315494 37315661 -180721497 - AluY SINE Alu -12 299 133 2555 38 10 0 chr3 37315661 37315954 -180721204 - AluY SINE Alu -15 296 1 318 319 55 61 chr3 37315958 37316121 -180721037 - L1 LINE L1 -1979 4167 4006 2235 121 0 3 chr3 37316125 37316423 -180720735 - AluSx SINE Alu -15 297 1 1105 95 0 0 chr3 37316423 37316560 -180720598 - AluSq/x SINE Alu -176 137 1 2510 90 3 0 chr3 37316576 37316888 -180720270 - AluSp SINE Alu 0 313 1 1783 83 8 12 chr3 37316965 37317205 -180719953 - AluY SINE Alu -13 298 60 367 292 71 0 chr3 37317233 37317346 -180719812 - L1MC5 LINE L1 -542 7419 7299 727 138 9 0 chr3 37317461 37317577 -180719581 + AluSq/x SINE Alu 2 118 -195 840 238 69 14 chr3 37317621 37317898 -180719260 - L1MB8 LINE L1 -6 6172 5881 221 200 46 46 chr3 37318103 37318168 -180718990 - MER91 DNA MER1_type 0 190 126 2114 131 0 0 chr3 37318199 37318489 -180718669 + AluSx SINE Alu 2 291 -21 1533 199 0 4 chr3 37318498 37318775 -180718383 + AluJb SINE Alu 29 304 -8 246 178 0 0 chr3 37318804 37318849 -180718309 + MLT1H LTR MaLR 117 161 -388 2276 94 3 16 chr3 37318972 37319279 -180717879 - AluY SINE Alu -8 303 1 1200 252 125 6 chr3 37319346 37319699 -180717459 + MLT1H LTR MaLR 153 547 -2 1962 152 0 0 chr3 37319706 37319868 -180717290 - AluSx SINE Alu -18 294 130 2365 95 13 0 chr3 37319868 37320173 -180716985 - AluSx SINE Alu -3 309 1 1962 152 0 0 chr3 37320173 37320300 -180716858 - AluSx SINE Alu -181 131 5 629 298 172 32 chr3 37320577 37321071 -180716087 - L2 LINE L2 -371 2943 2520 1944 138 3 33 chr3 37321071 37321245 -180715913 - AluJb SINE Alu -15 297 119 2082 113 10 17 chr3 37321245 37321546 -180715612 - AluSg1 SINE Alu -10 299 1 2366 88 0 41 chr3 37321546 37321864 -180715294 - AluY SINE Alu -6 305 1 1944 138 3 33 chr3 37321864 37321993 -180715165 - AluJb SINE Alu -191 121 2 629 298 172 32 chr3 37321993 37322062 -180715096 - L2 LINE L2 -794 2520 2301 2334 126 0 0 chr3 37322112 37322422 -180714736 + AluSx SINE Alu 1 310 -2 1643 142 48 62 chr3 37322448 37322757 -180714401 + AluJo SINE Alu 1 305 -7 1303 234 38 3 chr3 37322765 37323055 -180714103 + AluJb SINE Alu 1 300 -12 2291 106 3 3 chr3 37323056 37323358 -180713800 + AluSg SINE Alu 1 302 -8 1154 172 9 122 chr3 37323397 37323734 -180713424 - AluSx SINE Alu -2 300 2 2012 93 15 4 chr3 37323734 37324003 -180713155 - AluY SINE Alu -12 299 28 1977 143 31 0 chr3 37324279 37324573 -180712585 - AluJb SINE Alu -9 303 1 189 196 0 0 chr3 37324667 37324713 -180712445 + A-rich Low_complexity Low_complexity 1 46 0 757 207 23 52 chr3 37324869 37325043 -180712115 - AluJo SINE Alu -141 171 3 230 136 23 0 chr3 37325083 37325127 -180712031 + GA-rich Low_complexity Low_complexity 3 47 0 781 173 0 0 chr3 37326440 37326573 -180710585 - FLAM_A SINE Alu 0 133 1 2261 94 0 39 chr3 37326881 37327188 -180709970 - AluSx SINE Alu -17 295 1 1987 169 0 0 chr3 37327356 37327652 -180709506 - AluJb SINE Alu -16 296 1 1366 168 82 8 chr3 37328082 37328338 -180708820 - AluJb SINE Alu -29 283 9 2274 67 0 21 chr3 37328338 37328623 -180708535 - AluY SINE Alu -32 279 1 1805 162 27 7 chr3 37328789 37329086 -180708072 + AluJb SINE Alu 1 303 -9 1582 169 3 71 chr3 37329097 37329240 -180707918 + AluJo SINE Alu 5 156 -156 2570 61 0 0 chr3 37329240 37329537 -180707621 + AluY SINE Alu 1 297 -14 1582 169 3 71 chr3 37329537 37329719 -180707439 + AluJo SINE Alu 156 308 -4 780 159 0 8 chr3 37329720 37329852 -180707306 + AluJo/FLAM SINE Alu 1 131 -171 1305 159 151 4 chr3 37329854 37329946 -180707212 + AluJo SINE Alu 1 78 -234 219 36 0 0 chr3 37329946 37329974 -180707184 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1305 159 151 4 chr3 37329974 37330132 -180707026 + AluJo SINE Alu 78 288 -24 1646 168 51 10 chr3 37330158 37330450 -180706708 - AluJb SINE Alu -8 304 1 446 176 11 11 chr3 37330455 37330546 -180706612 - FLAM_A SINE Alu -17 125 35 1042 201 52 81 chr3 37330551 37330720 -180706438 - AluJo SINE Alu -2 300 128 2305 82 0 7 chr3 37330720 37331012 -180706146 - AluSg1 SINE Alu -19 290 1 1042 201 52 81 chr3 37331012 37331079 -180706079 - AluJo SINE Alu -174 128 61 1884 160 0 3 chr3 37331079 37331379 -180705779 - AluJb SINE Alu -13 299 1 1866 168 11 0 chr3 37331381 37331666 -180705492 - AluJb SINE Alu -16 296 9 1042 201 52 81 chr3 37331666 37331734 -180705424 - AluJo SINE Alu -242 60 1 21 0 0 0 chr3 37331734 37331755 -180705403 + AT_rich Low_complexity Low_complexity 1 21 0 2104 134 3 0 chr3 37331829 37332127 -180705031 - AluSx SINE Alu -11 301 3 1078 166 0 117 chr3 37332129 37332199 -180704959 - AluJb SINE Alu -29 283 206 2115 128 0 10 chr3 37332199 37332504 -180704654 - AluSx SINE Alu -10 302 1 1078 166 0 117 chr3 37332504 37332608 -180704550 - AluJb SINE Alu -106 206 91 2430 80 6 13 chr3 37332608 37332921 -180704237 - AluY SINE Alu 0 311 1 2400 77 0 7 chr3 37332925 37333222 -180703936 - AluSg SINE Alu -15 295 1 1078 166 0 117 chr3 37333222 37333288 -180703870 - AluJb SINE Alu -224 88 66 1988 130 0 23 chr3 37333522 37333821 -180703337 + AluSx SINE Alu 1 292 -20 28 0 0 0 chr3 37334354 37334382 -180702776 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 37335052 37335078 -180702080 + AT_rich Low_complexity Low_complexity 1 26 0 199 139 83 0 chr3 37335465 37335501 -180701657 - MIR SINE MIR -183 79 41 226 359 0 0 chr3 37335501 37335565 -180701593 - MIR SINE MIR -185 77 14 180 286 207 29 chr3 37336279 37336296 -180700862 + MIR3 SINE MIR 40 53 -155 2195 102 3 13 chr3 37336296 37336600 -180700558 - AluSq SINE Alu -5 308 8 180 286 207 29 chr3 37336600 37336722 -180700436 + MIR3 SINE MIR 53 204 -4 706 264 24 0 chr3 37336939 37337106 -180700052 - MER20 DNA MER1_type -48 171 1 2477 61 0 7 chr3 37337272 37337568 -180699590 - AluY SINE Alu -17 294 1 826 188 137 21 chr3 37337616 37337850 -180699308 - Tigger7 DNA MER2_type 0 2491 2231 411 160 300 10 chr3 37338874 37338974 -180698184 + AluJ/FLAM SINE Alu 1 86 -216 2045 127 16 13 chr3 37338978 37339286 -180697872 + AluSc SINE Alu 1 309 0 1813 169 24 0 chr3 37339300 37339596 -180697562 + AluSx SINE Alu 1 303 -9 2379 107 3 0 chr3 37339703 37340012 -180697146 + AluSx SINE Alu 1 310 -2 677 252 83 12 chr3 37340109 37340363 -180696795 + L1ME1 LINE L1 5554 5825 -341 1502 199 62 7 chr3 37340369 37340586 -180696572 + AluJo SINE Alu 7 243 -69 309 119 194 0 chr3 37340586 37340653 -180696505 - MADE1 DNA Mariner 0 80 1 1502 199 62 7 chr3 37340653 37340707 -180696451 + AluJo SINE Alu 243 293 -19 495 283 69 0 chr3 37340723 37340942 -180696216 + L1ME1 LINE L1 5813 6056 -115 2234 101 0 39 chr3 37341015 37341147 -180696011 + AluSx SINE Alu 5 141 -171 2186 99 43 7 chr3 37341147 37341449 -180695709 + AluSp SINE Alu 1 313 0 2234 101 0 39 chr3 37341449 37341624 -180695534 + AluSx SINE Alu 141 300 -12 312 247 104 52 chr3 37341918 37342072 -180695086 + L1ME4a LINE L1 5959 6120 -1 859 167 44 56 chr3 37342200 37342263 -180694895 - L1MB8 LINE L1 -5 6173 6111 1990 122 24 0 chr3 37342263 37342551 -180694607 + AluSg SINE Alu 1 295 -15 859 167 44 56 chr3 37342551 37342738 -180694420 - L1MB8 LINE L1 -67 6111 5926 1247 121 56 5 chr3 37342742 37342957 -180694201 - Tigger1 DNA MER2_type 0 2418 2193 2104 73 15 0 chr3 37343161 37343422 -180693736 - AluSp SINE Alu -48 265 1 1855 120 84 4 chr3 37343424 37343699 -180693459 - AluSx SINE Alu -15 297 1 209 167 0 0 chr3 37347101 37347137 -180690021 + T-rich Low_complexity Low_complexity 1 36 0 1123 89 0 0 chr3 37347240 37347375 -180689783 - AluSq/x SINE Alu -178 135 1 2130 129 7 0 chr3 37347499 37347801 -180689357 - AluSx SINE Alu -8 304 1 1299 155 92 67 chr3 37347871 37348155 -180689003 - AluJo SINE Alu -21 291 1 238 362 51 29 chr3 37348261 37348399 -180688759 - MIR3 SINE MIR -61 147 7 1907 138 3 10 chr3 37348753 37349049 -180688109 + AluSx SINE Alu 1 294 -18 886 168 0 0 chr3 37349137 37349280 -180687878 - AluJb SINE Alu -3 309 167 351 0 0 0 chr3 37349310 37349349 -180687809 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 286 99 0 0 chr3 37349349 37349392 -180687766 - AluJb SINE Alu -20 281 245 1015 129 6 35 chr3 37349393 37349564 -180687594 - AluJb SINE Alu -146 166 1 2221 128 0 0 chr3 37349620 37349917 -180687241 - AluSq SINE Alu -16 297 1 987 218 12 68 chr3 37350103 37350270 -180686888 - AluJb SINE Alu -24 288 138 1371 201 115 0 chr3 37350270 37350549 -180686609 - AluJb SINE Alu 0 312 2 987 218 12 68 chr3 37350549 37350633 -180686525 - AluJb SINE Alu -174 138 51 722 157 75 41 chr3 37350642 37350789 -180686369 - AluJo SINE Alu -159 153 2 230 263 97 26 chr3 37350953 37351067 -180686091 + MER94 DNA DNA 13 134 0 2280 109 3 3 chr3 37352341 37352644 -180684514 + AluSp SINE Alu 1 303 -10 2554 72 0 0 chr3 37352655 37352960 -180684198 + AluY SINE Alu 1 305 -6 1728 202 0 10 chr3 37353216 37353518 -180683640 + AluJb SINE Alu 1 299 -13 2441 68 0 0 chr3 37353859 37354152 -180683006 - AluY SINE Alu -18 293 1 2036 147 7 0 chr3 37354682 37354982 -180682176 - AluJb SINE Alu -10 302 1 929 248 146 21 chr3 37355020 37355619 -180681539 - L1ME3A LINE L1 -4 6166 5491 1364 188 0 103 chr3 37355627 37355751 -180681407 - AluJo SINE Alu -14 298 163 2158 70 10 34 chr3 37355751 37356049 -180681109 - AluSq SINE Alu -12 301 11 1364 188 0 103 chr3 37356049 37356244 -180680914 - AluJo SINE Alu -149 163 12 631 275 82 28 chr3 37356263 37356661 -180680497 - L1ME3A LINE L1 -700 5478 5063 1267 98 0 0 chr3 37356663 37356826 -180680332 - AluSg/x SINE Alu -16 296 134 2543 73 3 0 chr3 37356826 37357127 -180680031 - AluSq SINE Alu -11 302 1 273 287 120 7 chr3 37357127 37357277 -180679881 - L1ME3A LINE L1 -1074 5072 4906 512 197 96 81 chr3 37357315 37357513 -180679645 - L1ME3A LINE L1 -1393 4753 4553 600 75 0 0 chr3 37357513 37357593 -180679565 - AluY SINE Alu -16 295 216 1479 244 56 11 chr3 37357625 37358071 -180679087 - L1ME LINE L1 -343 5823 5358 2563 65 0 0 chr3 37358071 37358381 -180678777 - AluY SINE Alu -1 310 1 723 249 90 50 chr3 37358381 37358749 -180678409 - L1ME3A LINE L1 -1643 4503 4118 198 0 0 0 chr3 37358751 37358773 -180678385 + (TG)n Simple_repeat Simple_repeat 1 22 0 1791 158 10 42 chr3 37358774 37359084 -180678074 - AluJb SINE Alu -12 300 1 958 84 8 0 chr3 37359142 37359261 -180677897 - AluSg/x SINE Alu -118 192 73 2221 111 6 16 chr3 37359262 37359577 -180677581 - AluSx SINE Alu 0 312 1 1145 120 14 14 chr3 37359577 37359785 -180677373 - L1P5 LINE L1 -622 5529 5322 2245 111 3 0 chr3 37359785 37360082 -180677076 - AluSq SINE Alu -15 298 1 1769 136 117 0 chr3 37360082 37360399 -180676759 - MER51B LTR ERV1 -23 354 1 185 262 102 112 chr3 37360569 37360775 -180676383 - MIR SINE MIR -56 206 3 334 243 37 28 chr3 37360791 37360846 -180676312 + Tigger8 DNA MER2_type 141 194 -472 1889 101 4 26 chr3 37360846 37361114 -180676044 - AluSg SINE Alu -6 304 43 334 243 37 28 chr3 37361114 37361165 -180675993 + Tigger8 DNA MER2_type 194 248 -418 1944 136 40 13 chr3 37361165 37361466 -180675692 + AluJb SINE Alu 1 309 -3 2174 79 0 7 chr3 37362153 37362433 -180674725 + AluSg SINE Alu 1 278 -32 210 71 0 0 chr3 37362433 37362461 -180674697 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 2508 81 0 0 chr3 37362885 37363195 -180673963 + AluSx SINE Alu 1 310 -2 394 309 85 0 chr3 37363721 37363886 -180673272 + MIR SINE MIR 61 239 -23 271 254 0 0 chr3 37363978 37364045 -180673113 - L2 LINE L2 -6 3266 3200 931 195 13 0 chr3 37364226 37364385 -180672773 - AluJb SINE Alu -80 232 72 299 289 10 10 chr3 37364434 37364536 -180672622 - MIR SINE MIR -60 148 65 216 0 0 0 chr3 37365176 37365200 -180671958 + (TG)n Simple_repeat Simple_repeat 2 25 0 371 280 68 25 chr3 37367617 37367735 -180669423 + MLT1K LTR MaLR 203 325 -263 2358 109 0 3 chr3 37367745 37368057 -180669101 + AluSx SINE Alu 1 311 -1 181 308 15 15 chr3 37368204 37368269 -180668889 - MIR SINE MIR -166 96 32 1073 84 0 0 chr3 37368705 37368836 -180668322 + AluSq/x SINE Alu 1 131 -182 2235 125 3 0 chr3 37368839 37369144 -180668014 + AluSx SINE Alu 1 306 -6 2375 89 6 16 chr3 37369155 37369471 -180667687 + AluSq SINE Alu 1 313 0 195 315 0 0 chr3 37369736 37369790 -180667368 - MIR SINE MIR -138 70 17 2288 99 7 0 chr3 37370666 37370958 -180666200 + AluSg SINE Alu 1 294 -16 1646 116 13 0 chr3 37370958 37371181 -180665977 + AluSc SINE Alu 71 298 -11 214 175 0 0 chr3 37371619 37371659 -180665499 + (ATG)n Simple_repeat Simple_repeat 2 41 0 328 298 41 0 chr3 37371660 37371781 -180665377 - MIR SINE MIR -26 236 111 2352 91 10 0 chr3 37372346 37372644 -180664514 - AluY SINE Alu -10 301 1 448 285 69 44 chr3 37372911 37373378 -180663780 - L2 LINE L2 -213 3059 2581 1750 87 20 24 chr3 37373433 37373722 -180663436 - AluSp SINE Alu 0 313 44 1420 119 9 0 chr3 37374021 37374239 -180662919 - THE1C LTR MaLR 0 375 156 1980 95 0 0 chr3 37374244 37374487 -180662671 + AluSq SINE Alu 6 248 -65 1012 136 0 0 chr3 37374488 37374628 -180662530 + AluSx SINE Alu 45 184 -128 379 283 11 68 chr3 37474657 37474807 -180562351 + MER58B DNA MER1_type 162 300 -2120 2167 98 0 17 chr3 37474807 37475104 -180562054 - AluSg SINE Alu -18 292 1 379 283 11 68 chr3 37475104 37475144 -180562014 + MER58B DNA MER1_type 300 341 0 555 298 55 7 chr3 37475218 37475493 -180561665 + LTR33 LTR ERVL 184 471 -50 202 325 162 0 chr3 37475771 37475888 -180561270 - L2 LINE L2 -415 2899 2764 5607 113 10 61 chr3 37476880 37477687 -180559471 - L1PA15 LINE L1 -3 6162 5384 2502 66 0 0 chr3 37477687 37477988 -180559170 + AluY SINE Alu 1 301 -10 5607 113 10 61 chr3 37477988 37478435 -180558723 - L1PA15 LINE L1 -781 5384 4916 316 363 171 0 chr3 37478755 37478901 -180558257 - L2 LINE L2 0 3272 3102 603 286 118 29 chr3 37478932 37479170 -180557988 + MIR SINE MIR 2 260 -2 416 350 19 44 chr3 37480031 37480191 -180556967 + MER91A DNA MER1_type 2 157 -39 243 114 0 0 chr3 37481301 37481345 -180555813 - MLT2C1 LTR ERVL -4 514 357 237 218 0 0 chr3 37481358 37481436 -180555722 + (TA)n Simple_repeat Simple_repeat 1 78 0 1883 151 113 20 chr3 37481452 37481890 -180555268 - Tigger2 DNA MER2_type -22 2696 2 282 161 49 0 chr3 37481890 37481971 -180555187 + (TA)n Simple_repeat Simple_repeat 1 85 0 1636 169 30 30 chr3 37482014 37482352 -180554806 - MLT2C1 LTR ERVL -40 357 20 1154 218 36 27 chr3 37482519 37482987 -180554171 - MLT2B1 LTR ERVL -2 518 3 425 248 54 16 chr3 37482989 37483118 -180554040 + MER69A DNA AcHobo 42 175 -2 334 302 60 7 chr3 37483121 37483270 -180553888 + MIR SINE MIR 62 218 -44 280 290 57 72 chr3 37483537 37483730 -180553428 - MIR SINE MIR -33 229 40 357 323 92 24 chr3 37483894 37484058 -180553100 + MER91A DNA MER1_type 19 193 -3 881 217 0 0 chr3 37484269 37484421 -180552737 - FRAM SINE Alu -18 158 7 189 0 0 0 chr3 37484579 37484600 -180552558 + (T)n Simple_repeat Simple_repeat 1 21 0 828 160 115 30 chr3 37484878 37485078 -180552080 + MER20 DNA MER1_type 3 219 0 410 260 144 56 chr3 37486305 37486799 -180550359 - L1ME4a LINE L1 -23 6098 5549 303 283 0 0 chr3 37486950 37487056 -180550102 - L1ME4a LINE L1 -2190 3956 3851 330 286 21 42 chr3 37489088 37489280 -180547878 - HAL1 LINE L1 -2 2505 2318 317 286 131 30 chr3 37489362 37489530 -180547628 - HAL1 LINE L1 -204 2303 2119 526 287 138 25 chr3 37489887 37490242 -180546916 - HAL1 LINE L1 -2107 400 6 24 32 0 0 chr3 37490606 37490637 -180546521 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 37490686 37490714 -180546444 + AT_rich Low_complexity Low_complexity 1 28 0 655 212 31 111 chr3 37491216 37491442 -180545716 - MIR SINE MIR -7 255 48 526 89 13 0 chr3 37491589 37491668 -180545490 - MADE1 DNA Mariner 0 80 1 295 300 54 39 chr3 37492164 37492294 -180544864 - MIR3 SINE MIR -10 198 67 1315 260 24 61 chr3 37493156 37493291 -180543867 - L1ME3A LINE L1 -74 6096 5957 2291 105 0 3 chr3 37493291 37493585 -180543573 - AluSq SINE Alu -20 293 1 1315 260 24 61 chr3 37493585 37494018 -180543140 - L1ME3A LINE L1 -213 5957 5519 184 317 145 21 chr3 37494037 37494182 -180542976 - MIR SINE MIR -74 188 26 980 107 0 13 chr3 37494195 37494335 -180542823 + MER107 DNA MER1_type 6 145 -52 182 36 0 36 chr3 37494335 37494363 -180542795 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 402 299 147 30 chr3 37494689 37494920 -180542238 + L2 LINE L2 2990 3247 -25 964 208 26 39 chr3 37495587 37495818 -180541340 + MIR SINE MIR 35 262 0 280 333 82 6 chr3 37496137 37496296 -180540862 - MIR3 SINE MIR -25 183 13 707 288 52 30 chr3 37497423 37497870 -180539288 + LTR16A LTR ERVL 1 455 -2 193 339 32 50 chr3 37498437 37498655 -180538503 - L2 LINE L2 -379 2935 2722 273 57 0 0 chr3 37498927 37498962 -180538196 + (TG)n Simple_repeat Simple_repeat 2 36 0 189 121 0 0 chr3 37499027 37499060 -180538098 + (TCTCTG)n Simple_repeat Simple_repeat 6 38 0 199 200 0 44 chr3 37500801 37500846 -180536312 + L2 LINE L2 3230 3272 0 1574 163 100 9 chr3 37501080 37501399 -180535759 - MER7A DNA MER2_type 0 346 1 475 327 77 60 chr3 37501430 37501504 -180535654 + L2 LINE L2 2560 2631 -682 996 193 0 16 chr3 37501504 37501691 -180535467 - MER5A DNA MER1_type -1 188 5 475 327 77 60 chr3 37501691 37501836 -180535322 + L2 LINE L2 2631 2772 -541 2453 133 46 12 chr3 37501836 37502022 -180535136 + MSTA LTR MaLR 1 179 -249 1881 182 0 0 chr3 37502022 37502324 -180534834 + AluSx SINE Alu 1 302 -10 2453 133 46 12 chr3 37502324 37502549 -180534609 + MSTA LTR MaLR 179 426 -2 475 327 77 60 chr3 37502549 37503058 -180534100 + L2 LINE L2 2772 3311 -2 2815 229 34 25 chr3 37503155 37503871 -180533287 - MER21B LTR ERV1 -123 740 19 386 224 13 0 chr3 37503894 37503970 -180533188 - MER21B LTR ERV1 -774 89 13 749 249 141 61 chr3 37504197 37504923 -180532235 - LTR1B LTR ERV1 0 826 43 207 0 0 0 chr3 37505835 37505858 -180531300 + (T)n Simple_repeat Simple_repeat 1 23 0 1821 234 65 18 chr3 37505963 37506459 -180530699 + LTR40a LTR ERVL 1 519 0 316 276 26 96 chr3 37506712 37507024 -180530134 + MLT1K LTR MaLR 299 588 0 269 296 0 59 chr3 37507653 37507788 -180529370 + (TATG)n Simple_repeat Simple_repeat 2 128 0 1385 189 17 31 chr3 37509212 37509561 -180527597 - MER39 LTR ERV1 0 707 364 358 244 96 9 chr3 37509587 37509702 -180527456 - MER39 LTR ERV1 -582 125 1 373 115 0 0 chr3 37509836 37509897 -180527261 + L1MA1 LINE L1 6138 6198 -104 394 100 14 14 chr3 37510779 37510849 -180526309 + (TTCTC)n Simple_repeat Simple_repeat 1 70 0 2137 116 30 0 chr3 37510849 37511152 -180526006 - AluSq SINE Alu -1 312 1 203 259 56 0 chr3 37511419 37511473 -180525685 + L2 LINE L2 3200 3256 -16 1966 219 146 8 chr3 37511856 37511923 -180525235 + Zaphod DNA AcHobo 1 57 -3974 357 62 0 0 chr3 37511923 37511971 -180525187 + (CA)n Simple_repeat Simple_repeat 2 49 0 1966 219 146 8 chr3 37511971 37512418 -180524740 + Zaphod DNA AcHobo 57 586 -3445 771 238 121 19 chr3 37512419 37512684 -180524474 + Zaphod DNA AcHobo 3739 4030 -1 384 244 12 0 chr3 37513787 37513873 -180523285 + MER58A DNA MER1_type 4 90 -17 198 0 0 0 chr3 37513873 37513895 -180523263 + (TTA)n Simple_repeat Simple_repeat 3 24 0 16287 29 2 3 chr3 37513896 37516608 -180520550 - L1PA3 LINE L1 -16 6139 3430 2754 32 3 0 chr3 37516608 37516983 -180520175 + L1PA3 LINE L1 3034 3409 -2737 728 232 0 0 chr3 37516983 37517125 -180520033 + MER58A DNA MER1_type 83 224 0 383 317 32 39 chr3 37517267 37517559 -180519599 + L1MC4a LINE L1 7110 7351 -457 245 246 0 0 chr3 37517611 37517672 -180519486 + L1MC5 LINE L1 7333 7393 -568 303 299 23 69 chr3 37517733 37517907 -180519251 + L1MC5 LINE L1 7525 7690 -271 688 296 5 5 chr3 37518317 37518506 -180518652 - L3 LINE CR1 -756 821 633 729 189 61 33 chr3 37519384 37519564 -180517594 - AluJo SINE Alu -13 299 115 616 279 76 36 chr3 37519594 37519845 -180517313 + MIR SINE MIR 2 262 0 217 254 0 0 chr3 37519849 37519904 -180517254 + (TTA)n Simple_repeat Simple_repeat 2 56 0 279 319 64 0 chr3 37520259 37520353 -180516805 - L2 LINE L2 0 3313 3214 1163 149 14 10 chr3 37520396 37520604 -180516554 + MER2 DNA MER2_type 1 209 -136 1270 173 32 5 chr3 37520616 37520836 -180516322 + AluJb SINE Alu 35 260 -52 210 261 143 88 chr3 37520947 37521185 -180515973 - L2 LINE L2 -775 2539 2289 222 277 36 48 chr3 37521531 37521614 -180515544 + MIR3 SINE MIR 90 171 -37 23 33 0 0 chr3 37521964 37521994 -180515164 + AT_rich Low_complexity Low_complexity 1 30 0 448 272 101 22 chr3 37523002 37523199 -180513959 + MIR SINE MIR 20 230 -32 268 355 74 14 chr3 37523929 37524146 -180513012 - MIR SINE MIR -10 252 23 1893 160 54 32 chr3 37526721 37527256 -180509902 - MLT2A2 LTR ERVL -8 546 1 1902 141 31 7 chr3 37527451 37527742 -180509416 - AluSx SINE Alu -14 298 1 742 229 104 25 chr3 37527856 37528096 -180509062 + MIR SINE MIR 4 262 0 430 323 42 30 chr3 37528142 37528357 -180508801 + MIR SINE MIR 16 226 -36 333 313 140 7 chr3 37528679 37528829 -180508329 + MIR SINE MIR 44 213 -49 804 287 85 18 chr3 37528867 37529257 -180507901 - LTR16A LTR ERVL -12 438 23 3919 174 57 21 chr3 37529713 37530484 -180506674 - MER21B LTR ERV1 -49 814 16 24 0 0 0 chr3 37530820 37530844 -180506314 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 37531270 37531293 -180505865 + AT_rich Low_complexity Low_complexity 1 23 0 949 228 32 9 chr3 37531442 37531661 -180505497 - MER58A DNA MER1_type 0 224 1 598 268 7 7 chr3 37532260 37532402 -180504756 + MER5B DNA MER1_type 2 143 -35 1598 212 47 55 chr3 37532402 37532569 -180504589 - MLT1D LTR MaLR 0 505 338 1565 79 51 0 chr3 37532569 37532784 -180504374 - MER30 DNA MER1_type 0 230 5 1598 212 47 55 chr3 37532784 37533125 -180504033 - MLT1D LTR MaLR -167 338 1 308 286 71 0 chr3 37533485 37533597 -180503561 - MIR SINE MIR -43 219 100 387 153 163 10 chr3 37535327 37535425 -180501733 + ERVL LTR ERVL 5652 5764 0 2047 118 0 0 chr3 37535426 37535698 -180501460 - AluSx SINE Alu -2 310 39 634 245 58 1 chr3 37536269 37536453 -180500705 + MIR SINE MIR 14 204 -58 237 235 0 0 chr3 37536457 37536542 -180500616 + (TA)n Simple_repeat Simple_repeat 2 86 0 216 226 81 0 chr3 37536599 37536661 -180500497 + MIR SINE MIR 196 262 0 218 320 0 48 chr3 37537933 37538058 -180499100 - MIR SINE MIR -56 206 88 2799 141 58 14 chr3 37539794 37540090 -180497068 - MLT2B1 LTR ERVL 0 520 192 4392 82 0 15 chr3 37540090 37540686 -180496472 - L1PA8A LINE L1 0 6131 5545 2799 141 58 14 chr3 37540686 37540887 -180496271 - MLT2B1 LTR ERVL -328 192 1 662 233 68 6 chr3 37541138 37541301 -180495857 - MER45A DNA AcHobo -4 174 2 441 308 121 11 chr3 37541331 37541604 -180495554 - MLT1J2 LTR MaLR -125 325 23 23 0 0 0 chr3 37541772 37541795 -180495363 + AT_rich Low_complexity Low_complexity 1 23 0 718 222 6 19 chr3 37542829 37542991 -180494167 + MER58B DNA MER1_type 182 341 0 2101 109 3 26 chr3 37545416 37545729 -180491429 - AluSx SINE Alu -6 306 1 348 200 271 50 chr3 37545807 37545925 -180491233 - MER5A DNA MER1_type -10 179 24 261 0 0 0 chr3 37545925 37545954 -180491204 + (CTG)n Simple_repeat Simple_repeat 1 29 0 348 200 271 50 chr3 37545954 37545975 -180491183 - MER5A DNA MER1_type -165 24 9 440 259 36 0 chr3 37546046 37546158 -180491000 + MIR SINE MIR 45 160 -102 358 308 33 0 chr3 37546190 37546281 -180490877 + L2 LINE L2 3220 3313 0 212 391 11 0 chr3 37546942 37547029 -180490129 - L2 LINE L2 -27 3245 3158 385 263 20 0 chr3 37547162 37547261 -180489897 + L2 LINE L2 3212 3312 -1 279 0 0 0 chr3 37547854 37547885 -180489273 + (A)n Simple_repeat Simple_repeat 1 31 0 2663 94 11 5 chr3 37547978 37548349 -180488809 + THE1C LTR MaLR 1 373 -2 222 300 20 50 chr3 37549133 37549233 -180487925 + MIR3 SINE MIR 66 162 -46 2580 64 0 0 chr3 37551477 37551788 -180485370 - AluY SINE Alu 0 311 1 31 26 0 0 chr3 37552945 37552983 -180484175 + AT_rich Low_complexity Low_complexity 1 38 0 396 242 42 0 chr3 37554483 37554603 -180482555 + MER94 DNA DNA 2 126 -8 190 355 120 25 chr3 37555032 37555232 -180481926 - L3 LINE CR1 -21 1556 1338 685 332 72 4 chr3 37555280 37555557 -180481601 - L3 LINE CR1 -239 1338 1043 441 330 10 95 chr3 37555568 37555768 -180481390 + MER91A DNA MER1_type 1 183 -13 413 251 19 111 chr3 37555792 37555999 -180481159 - L3 LINE CR1 -543 1034 847 355 346 88 15 chr3 37556037 37556242 -180480916 - L3 LINE CR1 -977 600 381 1016 251 70 42 chr3 37557107 37557493 -180479665 - MLT1I LTR MaLR -4 405 9 334 317 44 63 chr3 37557683 37557954 -180479204 + HAL1 LINE L1 1113 1378 -1129 215 260 10 0 chr3 37557967 37558063 -180479095 + (TA)n Simple_repeat Simple_repeat 2 98 0 2477 110 38 5 chr3 37558394 37558766 -180478392 - L1PA11 LINE L1 -2 6172 5789 609 62 0 0 chr3 37558767 37558848 -180478310 - L1PA10 LINE L1 -299 5869 5789 593 74 0 0 chr3 37558849 37558930 -180478228 - L1PA13 LINE L1 -294 5869 5789 3188 86 0 0 chr3 37558931 37559373 -180477785 - L1PA10 LINE L1 -299 5869 5428 * 12143 209 13 37 chr3 37559369 37563211 -180473947 - L1PA12 LINE L1 -2451 5133 5 404 259 185 0 chr3 37563347 37563509 -180473649 - MIR SINE MIR -58 204 13 349 285 33 46 chr3 37563736 37563960 -180473198 + L1MC/D LINE L1 5288 5508 -851 189 0 0 0 chr3 37563970 37563991 -180473167 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 276 30 0 0 chr3 37563990 37564023 -180473135 + (CA)n Simple_repeat Simple_repeat 2 34 0 193 123 27 68 chr3 37564206 37564279 -180472879 + GA-rich Low_complexity Low_complexity 3 72 0 671 276 12 6 chr3 37564279 37564449 -180472709 + MER63A DNA MER1_type 39 209 -1 250 312 37 28 chr3 37564895 37565004 -180472154 + L2 LINE L2 3189 3298 -15 187 218 20 0 chr3 37565937 37566038 -180471120 + C-rich Low_complexity Low_complexity 2 104 0 342 67 0 0 chr3 37566611 37566656 -180470502 + (CA)n Simple_repeat Simple_repeat 2 46 0 2127 132 12 15 chr3 37567239 37567579 -180469579 - MER44D DNA MER2_type 0 609 1 614 245 7 7 chr3 37569014 37569169 -180467989 - MIR SINE MIR 0 262 108 314 313 71 46 chr3 37569180 37569379 -180467779 - MIR SINE MIR -31 231 29 579 259 78 10 chr3 37569472 37569665 -180467493 + Charlie8 DNA MER1_type 15 220 -2197 192 182 0 0 chr3 37570337 37570370 -180466788 - MIR SINE MIR -63 145 113 189 0 0 0 chr3 37573576 37573597 -180463561 + (TA)n Simple_repeat Simple_repeat 2 22 0 203 189 0 0 chr3 37573630 37573667 -180463491 + (TA)n Simple_repeat Simple_repeat 1 37 0 778 289 62 18 chr3 37573727 37574153 -180463005 - LTR16C LTR ERVL 0 491 1 21 0 0 0 chr3 37575257 37575278 -180461880 + AT_rich Low_complexity Low_complexity 1 21 0 249 362 115 6 chr3 37576414 37576588 -180460570 - L3 LINE CR1 -73 1504 1312 235 293 0 0 chr3 37576591 37576649 -180460509 - Charlie8 DNA MER1_type -999 1418 1361 405 238 160 70 chr3 37576728 37576972 -180460186 - Charlie8 DNA MER1_type -2141 276 11 296 174 47 12 chr3 37577039 37577125 -180460033 + MLT2B3 LTR ERVL 5 93 -461 898 221 81 94 chr3 37577496 37577867 -180459291 + MLT2B3 LTR ERVL 83 448 -106 7855 164 76 20 chr3 37577873 37578268 -180458890 + MSTB-int LTR MaLR 1 372 -1279 2213 125 0 3 chr3 37578268 37578571 -180458587 + AluSx SINE Alu 3 304 -8 7855 164 76 20 chr3 37578571 37579738 -180457420 + MSTB-int LTR MaLR 372 1651 0 1158 146 11 100 chr3 37579738 37580019 -180457139 + MSTB LTR MaLR 1 256 -170 627 272 47 18 chr3 37580278 37580557 -180456601 + LTR33 LTR ERVL 3 258 -265 183 146 0 0 chr3 37581791 37581832 -180455326 + (T)n Simple_repeat Simple_repeat 1 41 0 3045 51 0 0 chr3 37581834 37582207 -180454951 - L1PA4 LINE L1 -3 6152 5780 1088 193 0 37 chr3 37582509 37582727 -180454431 + MER20 DNA MER1_type 9 218 -1 395 324 126 14 chr3 37583808 37584030 -180453128 - MLT1K LTR MaLR -19 569 323 490 302 22 22 chr3 37584473 37584612 -180452546 - MER5B DNA MER1_type -2 176 38 240 339 0 0 chr3 37585241 37585303 -180451855 + C-rich Low_complexity Low_complexity 1 62 0 1063 233 51 6 chr3 37585305 37585810 -180451348 - L1M4 LINE L1 -2467 3679 3119 1470 223 24 50 chr3 37586097 37586643 -180450515 - L1M4 LINE L1 -3068 3078 2547 1241 236 87 77 chr3 37587296 37587797 -180449361 - MLT1H LTR MaLR 0 549 45 211 333 0 0 chr3 37588048 37588117 -180449041 + GA-rich Low_complexity Low_complexity 4 72 0 427 252 129 43 chr3 37588819 37588958 -180448200 - L2 LINE L2 0 3272 3122 316 264 11 0 chr3 37590162 37590253 -180446905 - MLT1I LTR MaLR 0 409 318 719 246 0 31 chr3 37590885 37591076 -180446082 - MER20 DNA MER1_type 0 219 35 472 174 43 61 chr3 37591304 37591419 -180445739 - MIR3 SINE MIR -5 203 91 2171 123 0 19 chr3 37592038 37592354 -180444804 + AluSg SINE Alu 1 310 0 308 261 109 0 chr3 37592399 37592518 -180444640 - MER117 DNA MER1_type -36 161 30 195 42 0 0 chr3 37592640 37592664 -180444494 + (T)n Simple_repeat Simple_repeat 1 24 0 285 130 0 0 chr3 37593053 37593099 -180444059 - MLT2B1 LTR ERVL -8 512 467 308 102 11 34 chr3 37593114 37593202 -180443956 + (TA)n Simple_repeat Simple_repeat 2 87 0 1589 215 89 35 chr3 37593202 37593663 -180443495 - MLT2B1 LTR ERVL -34 486 1 23 0 0 0 chr3 37594255 37594278 -180442880 + GC_rich Low_complexity Low_complexity 1 23 0 292 172 20 40 chr3 37594296 37594395 -180442763 + C-rich Low_complexity Low_complexity 2 98 0 692 221 15 0 chr3 37595001 37595132 -180442026 + MER5A DNA MER1_type 1 133 -56 913 122 0 0 chr3 37595135 37595266 -180441892 - AluSc SINE Alu -4 305 175 325 206 32 0 chr3 37595266 37595329 -180441829 + MER5A DNA MER1_type 125 189 0 263 394 11 23 chr3 37595698 37595873 -180441285 + L2 LINE L2 270 442 -2872 21 36 0 0 chr3 37596818 37596846 -180440312 + AT_rich Low_complexity Low_complexity 1 28 0 350 267 62 2 chr3 37597103 37597278 -180439880 - L1ME LINE L1 -306 5815 5622 305 98 78 0 chr3 37597460 37597511 -180439647 - MLT2A1 LTR ERVL 0 453 399 265 60 100 10 chr3 37597514 37597614 -180439544 + (TA)n Simple_repeat Simple_repeat 1 109 0 2548 89 2 68 chr3 37597615 37598041 -180439117 - MLT2A1 LTR ERVL -44 400 3 428 276 8 8 chr3 37598173 37598296 -180438862 - MIR SINE MIR -4 258 136 229 176 35 94 chr3 37598298 37598383 -180438775 - MER116 DNA Mariner 0 80 1 332 284 9 28 chr3 37598405 37598514 -180438644 - MIR SINE MIR -154 108 2 211 331 66 50 chr3 37598635 37598756 -180438402 + L2 LINE L2 3138 3260 -12 356 235 139 116 chr3 37599763 37600150 -180437008 - MLT1L LTR MaLR -4 611 216 1402 153 36 4 chr3 37600759 37601040 -180436118 - L1MA8 LINE L1 0 6291 6002 3568 122 22 52 chr3 37601181 37601391 -180435767 - L1MA8 LINE L1 -289 6002 5787 252 0 0 0 chr3 37601391 37601419 -180435739 + (TA)n Simple_repeat Simple_repeat 1 28 0 3568 122 22 52 chr3 37601419 37601886 -180435272 - L1MA8 LINE L1 -504 5787 5345 602 281 44 0 chr3 37601888 37602023 -180435135 - FRAM SINE Alu -30 146 6 1275 127 36 12 chr3 37602027 37602279 -180434879 - L1 LINE L1 -779 5367 5110 2366 147 3 3 chr3 37605210 37605585 -180431573 + THE1C LTR MaLR 1 375 0 2247 111 16 5 chr3 37605585 37606161 -180430997 + THE1C-int LTR MaLR 1 643 -937 665 226 44 0 chr3 37606247 37606406 -180430752 - MER3 DNA MER1_type -29 180 15 17722 146 8 7 chr3 37606475 37609862 -180427296 + L1PA11 LINE L1 2087 5477 -697 503 114 0 13 chr3 37609862 37609941 -180427217 - MADE1 DNA Mariner 0 80 3 17722 146 8 7 chr3 37609941 37610639 -180426519 + L1PA11 LINE L1 5477 6173 -1 594 323 25 0 chr3 37610639 37610840 -180426318 + MIR SINE MIR 47 252 -10 2017 149 83 13 chr3 37610861 37611257 -180425901 - MSTB1 LTR MaLR 0 432 9 292 260 50 10 chr3 37611399 37611499 -180425659 - MIR SINE MIR -5 257 154 500 267 105 17 chr3 37611665 37611837 -180425321 - MIR SINE MIR -56 206 20 21 71 0 0 chr3 37611879 37611921 -180425237 + AT_rich Low_complexity Low_complexity 1 42 0 242 317 35 45 chr3 37611935 37612137 -180425021 - L2 LINE L2 -227 3086 2887 572 233 17 57 chr3 37612159 37612335 -180424823 - MER97c DNA MER1_type? -917 173 5 364 284 69 78 chr3 37614753 37614971 -180422187 + MIR SINE MIR 44 259 -3 738 296 40 20 chr3 37615684 37615934 -180421224 - MIR SINE MIR 0 262 8 41 0 0 0 chr3 37616118 37616159 -180420999 + AT_rich Low_complexity Low_complexity 1 41 0 960 252 33 36 chr3 37616598 37616931 -180420227 + LTR16C LTR ERVL 153 484 -7 2400 88 3 0 chr3 37617162 37617469 -180419689 + AluY SINE Alu 1 308 -3 23 68 0 0 chr3 37618579 37618623 -180418535 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr3 37619596 37619626 -180417532 + AT_rich Low_complexity Low_complexity 1 30 0 822 200 91 0 chr3 37620037 37620202 -180416956 + Tigger3(Golem) DNA MER2_type 2 181 -2848 * 4278 122 74 32 chr3 37620200 37620379 -180416779 + Tigger3(Golem) DNA MER2_type 2141 2311 -718 372 22 0 0 chr3 37620379 37620424 -180416734 + (TG)n Simple_repeat Simple_repeat 2 46 0 4278 122 74 32 chr3 37620424 37621096 -180416062 + Tigger3(Golem) DNA MER2_type 2311 3028 -1 194 320 0 39 chr3 37621337 37621415 -180415743 + L2 LINE L2 3234 3308 -5 300 257 0 14 chr3 37622005 37622075 -180415083 - L2 LINE L2 0 3272 3204 1836 144 16 35 chr3 37622704 37623016 -180414142 - AluJo SINE Alu -4 308 3 523 295 145 5 chr3 37624965 37625158 -180412000 - MIR SINE MIR -11 251 32 321 302 0 21 chr3 37625177 37625273 -180411885 + MER5B DNA MER1_type 79 172 -6 393 234 73 68 chr3 37628288 37628541 -180408617 - MLT1K LTR MaLR -6 609 328 181 291 9 100 chr3 37628606 37628716 -180408442 - MIR3 SINE MIR -27 181 82 2122 139 3 0 chr3 37628823 37629125 -180408033 + AluSx SINE Alu 1 303 -9 505 271 14 21 chr3 37629167 37629448 -180407710 + MST-int LTR MaLR 433 711 -940 2071 135 3 19 chr3 37631181 37631493 -180405665 - AluSx SINE Alu 0 312 6 764 295 123 50 chr3 37631807 37632316 -180404842 - L2 LINE L2 -8 3305 2761 1558 171 10 106 chr3 37632316 37632720 -180404438 - MLT1A1 LTR MaLR 0 365 1 764 295 123 50 chr3 37632720 37632762 -180404396 - L2 LINE L2 -552 2761 2723 2090 143 32 24 chr3 37632902 37633204 -180403954 + MSTC LTR MaLR 54 362 -66 2060 109 0 3 chr3 37633204 37633511 -180403647 + AluSq SINE Alu 1 306 0 2090 143 32 24 chr3 37633511 37633579 -180403579 + MSTC LTR MaLR 362 428 0 429 157 36 12 chr3 37633880 37633963 -180403195 - MER5A DNA MER1_type -2 187 103 575 279 59 36 chr3 37634939 37635158 -180402000 + MIR SINE MIR 10 233 -29 193 358 136 19 chr3 37636932 37637094 -180400064 + MIR SINE MIR 20 200 -62 228 67 0 0 chr3 37637710 37637740 -180399418 + (CAT)n Simple_repeat Simple_repeat 2 31 0 426 357 94 14 chr3 37637796 37638009 -180399149 - L2 LINE L2 -4 3268 3039 1004 185 57 64 chr3 37638101 37638415 -180398743 - MER33 DNA MER1_type 0 324 13 351 316 0 0 chr3 37638420 37638499 -180398659 - L2 LINE L2 -33 3239 3161 696 334 72 47 chr3 37638512 37639173 -180397985 - L2 LINE L2 -268 3004 2332 963 309 116 9 chr3 37639175 37639622 -180397536 - LTR33 LTR ERVL -26 495 1 1200 53 12 6 chr3 37640107 37640277 -180396881 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 1148 103 6 0 chr3 37640296 37640470 -180396688 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 194 324 41 90 chr3 37641607 37641752 -180395406 - L2 LINE L2 -182 3090 2953 572 196 69 123 chr3 37641847 37642213 -180394945 + MLT1H LTR MaLR 129 542 0 374 0 0 21 chr3 37642293 37642340 -180394818 + (TA)n Simple_repeat Simple_repeat 1 46 0 930 199 21 5 chr3 37642764 37642950 -180394208 - MER5A DNA MER1_type 0 189 1 1877 178 55 15 chr3 37642969 37643368 -180393790 + MLT2C2 LTR ERVL 1 415 -49 191 88 29 0 chr3 37643480 37643514 -180393644 + (GA)n Simple_repeat Simple_repeat 2 36 0 378 107 0 0 chr3 37643576 37643632 -180393526 + (A)n Simple_repeat Simple_repeat 1 56 0 203 364 50 16 chr3 37643639 37643760 -180393398 + L2 LINE L2 2934 3058 -214 242 250 0 16 chr3 37644168 37644232 -180392926 - L2 LINE L2 -1 3271 3209 961 255 137 29 chr3 37644924 37645304 -180391854 + LTR16C LTR ERVL 71 491 0 466 266 68 34 chr3 37645862 37646069 -180391089 + L2 LINE L2 2593 2806 -508 299 270 139 17 chr3 37646062 37646177 -180390981 + L2 LINE L2 3011 3139 -174 * 1381 228 111 8 chr3 37646230 37646599 -180390559 - L1ME1 LINE L1 -283 5883 5477 2068 171 50 16 chr3 37646730 37647214 -180389944 - L1MC2 LINE L1 -6 6338 5839 188 265 0 0 chr3 37647214 37647258 -180389900 - MER5B DNA MER1_type -128 50 7 433 223 39 85 chr3 37647265 37647395 -180389763 + L2 LINE L2 3190 3313 0 216 0 0 0 chr3 37647955 37647979 -180389179 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 266 270 90 0 chr3 37648064 37648164 -180388994 + MIR3 SINE MIR 99 207 -1 274 353 147 0 chr3 37648465 37648581 -180388577 + L2 LINE L2 3136 3268 -4 216 0 0 0 chr3 37648752 37648776 -180388382 + (T)n Simple_repeat Simple_repeat 1 24 0 254 275 145 22 chr3 37648851 37648989 -180388169 - MIR SINE MIR -29 233 79 261 338 103 0 chr3 37649129 37649265 -180387893 + MIR SINE MIR 112 261 -1 26 30 0 0 chr3 37649856 37649889 -180387269 + AT_rich Low_complexity Low_complexity 1 33 0 1659 286 59 29 chr3 37649891 37650942 -180386216 - L1ME3A LINE L1 -52 6118 5035 4089 156 37 32 chr3 37650942 37651723 -180385435 - LTR1 LTR ERV1 0 785 1 863 121 52 81 chr3 37651723 37651896 -180385262 - HUERS-P2 LTR ERV1 0 3088 2921 1162 130 5 5 chr3 37652070 37652262 -180384896 - Tigger1 DNA MER2_type -1186 1232 1041 8310 125 38 8 chr3 37653158 37654484 -180382674 - HUERS-P2 LTR ERV1 -249 2839 1474 3206 162 38 29 chr3 37654497 37655157 -180382001 - LTR1 LTR ERV1 -119 666 1 635 282 16 12 chr3 37655162 37655410 -180381748 - L1ME3A LINE L1 -1115 5031 4783 363 319 49 11 chr3 37655415 37655678 -180381480 - L1ME3A LINE L1 -1402 4744 4472 1032 280 73 62 chr3 37655826 37656930 -180380228 - L1ME3A LINE L1 -1744 4402 3286 702 210 114 54 chr3 37657046 37657397 -180379761 - L1ME3 LINE L1 -15 6541 6174 13259 148 22 11 chr3 37657397 37657592 -180379566 - Tigger1 DNA MER2_type -1 2417 2226 1705 126 19 4 chr3 37657592 37657863 -180379295 - L1PB1 LINE L1 -1 6150 5876 13259 148 22 11 chr3 37657863 37659754 -180377404 - Tigger1 DNA MER2_type -192 2226 301 237 65 0 0 chr3 37659754 37659785 -180377373 + (CA)n Simple_repeat Simple_repeat 2 32 0 13259 148 22 11 chr3 37659785 37660062 -180377096 - Tigger1 DNA MER2_type -2117 301 28 1184 261 46 41 chr3 37660097 37661199 -180375959 - L1ME3 LINE L1 -394 6162 5064 253 189 94 9 chr3 37661246 37661352 -180375806 - L1ME3 LINE L1 -4581 1959 1845 608 202 50 81 chr3 37661728 37661926 -180375232 + MLT1I LTR MaLR 217 408 -1 308 277 92 34 chr3 37662148 37662267 -180374891 - L2 LINE L2 -243 3029 2904 480 220 74 150 chr3 37662295 37662656 -180374502 + LTR16A1 LTR ERVL 1 317 -140 1034 175 46 136 chr3 37662656 37663091 -180374067 - MSTD LTR MaLR 0 396 1 480 220 74 150 chr3 37663091 37663215 -180373943 + LTR16A1 LTR ERVL 317 449 -8 259 293 30 0 chr3 37663263 37663362 -180373796 - MER103 DNA DNA -24 142 41 305 350 25 0 chr3 37663389 37663509 -180373649 + MIR SINE MIR 20 142 -120 1428 240 120 34 chr3 37663519 37664102 -180373056 + L1ME1 LINE L1 5530 6162 -4 224 246 217 0 chr3 37664221 37664290 -180372868 + MIR SINE MIR 153 236 -26 21 0 0 0 chr3 37664345 37664366 -180372792 + AT_rich Low_complexity Low_complexity 1 21 0 956 67 0 15 chr3 37664388 37664523 -180372635 - L1PA4 LINE L1 0 6155 6023 576 263 43 14 chr3 37666256 37666465 -180370693 - L1ME1 LINE L1 -7 6159 5945 368 244 67 88 chr3 37667132 37667325 -180369833 - MIR SINE MIR -2 260 72 363 106 0 0 chr3 37667509 37667575 -180369583 + (TG)n Simple_repeat Simple_repeat 2 67 0 288 130 0 0 chr3 37668078 37668124 -180369034 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 264 59 0 0 chr3 37668126 37668160 -180368998 + (TG)n Simple_repeat Simple_repeat 1 34 0 242 351 18 18 chr3 37669700 37669811 -180367347 + MIR SINE MIR 30 140 -68 393 217 12 0 chr3 37669937 37670020 -180367138 + MER5A DNA MER1_type 26 109 -80 745 247 30 6 chr3 37670074 37670240 -180366918 + MER5A DNA MER1_type 2 171 -18 231 239 0 15 chr3 37670333 37670400 -180366758 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 228 250 12 12 chr3 37670499 37670579 -180366579 - LTR67 LTR ERVL -20 537 458 210 239 36 29 chr3 37672155 37672298 -180364860 + (TTATA)n Simple_repeat Simple_repeat 1 141 -387 1581 134 78 34 chr3 37672298 37672618 -180364540 - MER44D DNA MER2_type -1 608 5 210 239 36 29 chr3 37672618 37672680 -180364478 + (TTATA)n Simple_repeat Simple_repeat 141 528 0 227 111 48 16 chr3 37672684 37672747 -180364411 + (TA)n Simple_repeat Simple_repeat 1 65 0 204 255 226 69 chr3 37675759 37675861 -180361297 - MIR3 SINE MIR -49 159 42 464 139 38 0 chr3 37675874 37675953 -180361205 + MLT1F LTR MaLR 1 82 -460 1516 186 23 39 chr3 37676145 37676452 -180360706 - AluJo SINE Alu -6 306 5 494 277 122 29 chr3 37676843 37677668 -180359490 - L1MCc LINE L1 -4697 2246 1279 268 288 9 36 chr3 37678497 37678608 -180358550 - MIR SINE MIR -33 229 122 753 294 87 4 chr3 37678734 37678965 -180358193 + MIR SINE MIR 11 260 -2 219 195 0 0 chr3 37679039 37679080 -180358078 + L2 LINE L2 3186 3226 -87 1474 237 30 40 chr3 37679806 37680271 -180356887 - MLT1C LTR MaLR -1 466 1 227 308 25 101 chr3 37680586 37680872 -180356286 - L2 LINE L2 -205 3067 2804 1061 202 0 5 chr3 37680979 37681182 -180355976 - MLT1A1 LTR MaLR -29 336 135 1596 225 22 22 chr3 37681182 37681547 -180355611 - MLT1A1 LTR MaLR 0 365 1 238 316 91 73 chr3 37681553 37681895 -180355263 - L2 LINE L2 -528 2786 2439 303 164 0 0 chr3 37682658 37682719 -180354439 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 2402 136 114 50 chr3 37682720 37683204 -180353954 - MLT2B3 LTR ERVL -39 515 1 227 272 54 88 chr3 37683678 37683825 -180353333 + MIR SINE MIR 120 261 -1 266 194 32 16 chr3 37684808 37684870 -180352288 + MIR SINE MIR 93 155 -107 1121 216 75 48 chr3 37684998 37685437 -180351721 - LTR37B LTR ERV1 -3 465 15 1603 164 27 27 chr3 37685453 37685745 -180351413 - AluJb SINE Alu -19 293 2 21 36 0 0 chr3 37688102 37688130 -180349028 + AT_rich Low_complexity Low_complexity 1 28 0 287 336 109 0 chr3 37688236 37688465 -180348693 - L1ME LINE L1 -351 5819 5566 422 263 78 37 chr3 37688470 37688687 -180348471 - L1ME LINE L1 -861 5285 5060 263 247 130 0 chr3 37689175 37689252 -180347906 - L2 LINE L2 0 3313 3227 650 348 166 28 chr3 37689273 37690011 -180347147 - L2 LINE L2 -248 3065 2223 9728 138 9 1 chr3 37690323 37692703 -180344455 + L1PA12 LINE L1 3656 6046 -122 422 241 45 33 chr3 37692894 37693139 -180344019 + L1PA12 LINE L1 5921 6168 0 231 375 53 46 chr3 37693633 37693785 -180343373 - L2 LINE L2 -22 3250 3098 185 108 27 0 chr3 37693884 37693921 -180343237 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 619 251 117 14 chr3 37694227 37694450 -180342708 - MLT1J2 LTR MaLR -204 246 1 449 246 27 18 chr3 37694552 37694662 -180342496 - MIR SINE MIR -149 113 3 322 292 144 35 chr3 37694746 37694948 -180342210 - L1ME LINE L1 -451 5670 5447 358 196 22 0 chr3 37695279 37695371 -180341787 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 931 184 56 0 chr3 37695787 37695966 -180341192 - MER5A DNA MER1_type 0 189 1 1134 229 5 0 chr3 37697622 37697840 -180339318 - MER20 DNA MER1_type 0 219 1 239 345 104 49 chr3 37698014 37698379 -180338779 - LTR16C LTR ERVL -34 457 73 182 222 56 0 chr3 37699428 37699482 -180337676 - MIR3 SINE MIR -1 207 151 632 245 38 33 chr3 37699612 37699796 -180337362 - MER63A DNA MER1_type -25 185 1 277 171 72 90 chr3 37701647 37701758 -180335400 + MER103 DNA DNA 12 120 -46 926 215 92 0 chr3 37701830 37702025 -180335133 + MER58A DNA MER1_type 12 224 0 722 249 107 29 chr3 37702688 37703151 -180334007 - MLT1F1 LTR MaLR -3 564 1 382 240 42 0 chr3 37703289 37703385 -180333773 - MER91B DNA MER1_type -1 189 90 322 235 78 41 chr3 37703402 37703522 -180333636 - MER91B DNA MER1_type -60 130 1 230 323 15 0 chr3 37703718 37703783 -180333375 + L2 LINE L2 3142 3207 -65 230 283 25 67 chr3 37703840 37703960 -180333198 - L2 LINE L2 -95 3218 3104 256 377 23 0 chr3 37704508 37704638 -180332520 + L3b LINE CR1 1104 1236 -347 423 284 148 12 chr3 37706938 37707100 -180330058 - MER5A DNA MER1_type -5 184 1 204 316 51 31 chr3 37708175 37708273 -180328885 - MIR3 SINE MIR 0 208 109 263 368 11 0 chr3 37708706 37708793 -180328365 + L2 LINE L2 2881 2968 -304 436 319 60 32 chr3 37708970 37709221 -180327937 - MLT1L LTR MaLR -192 423 103 1846 130 0 0 chr3 37709486 37709747 -180327411 - AluY SINE Alu -16 295 35 486 338 45 40 chr3 37709751 37709844 -180327314 - MIR SINE MIR -21 241 150 1691 147 29 33 chr3 37709844 37709969 -180327189 + AluSc SINE Alu 1 125 -184 207 0 0 0 chr3 37709969 37709992 -180327166 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1691 147 29 33 chr3 37709992 37710172 -180326986 + AluSc SINE Alu 125 305 -4 486 338 45 40 chr3 37710172 37710300 -180326858 - MIR SINE MIR -112 150 19 1194 52 35 0 chr3 37710599 37710771 -180326387 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 384 250 19 10 chr3 37710771 37710875 -180326283 + CT-rich Low_complexity Low_complexity 2 106 0 1297 261 4 4 chr3 37711007 37711279 -180325879 + MLT1E LTR MaLR 314 585 -8 303 248 99 75 chr3 37711570 37711731 -180325427 + LTR33A LTR ERVL 21 185 -338 491 238 184 12 chr3 37711816 37711984 -180325174 - MER3 DNA MER1_type -12 197 1 442 263 113 33 chr3 37711998 37712211 -180324947 + LTR33A LTR ERVL 294 523 0 1389 206 67 75 chr3 37712245 37712351 -180324807 - MLT1F1 LTR MaLR 0 567 462 2181 113 0 0 chr3 37712351 37712635 -180324523 + AluSx SINE Alu 1 284 -28 1389 206 67 75 chr3 37712635 37712655 -180324503 - MLT1F1 LTR MaLR -105 462 443 378 0 0 0 chr3 37712655 37712697 -180324461 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1389 206 67 75 chr3 37712697 37712958 -180324200 - MLT1F1 LTR MaLR -124 443 182 465 338 26 7 chr3 37713031 37713185 -180323973 - MLT1F1 LTR MaLR -383 159 3 21 36 0 0 chr3 37714187 37714215 -180322943 + AT_rich Low_complexity Low_complexity 1 28 0 216 299 0 26 chr3 37714664 37714741 -180322417 + CT-rich Low_complexity Low_complexity 4 78 0 245 339 62 9 chr3 37715082 37715194 -180321964 + L2 LINE L2 3150 3267 -5 3593 194 56 19 chr3 37715381 37715985 -180321173 + L1MA9 LINE L1 4428 5077 -1069 2831 13 0 0 chr3 37715985 37716295 -180320863 - AluYb8 SINE Alu -8 310 1 3593 194 56 19 chr3 37716295 37716581 -180320577 + L1MA9 LINE L1 5077 5351 -795 1332 115 86 0 chr3 37716875 37717084 -180320074 - MER30 DNA MER1_type 0 230 4 3681 191 85 16 chr3 37717196 37718069 -180319089 + L1MA9 LINE L1 5349 6281 -31 2059 103 4 11 chr3 37718088 37718393 -180318765 - AluSc SINE Alu 0 303 1 773 238 52 40 chr3 37719882 37719970 -180317188 + MIR SINE MIR 3 88 -174 1730 169 13 10 chr3 37719970 37720272 -180316886 - AluJb SINE Alu -7 305 3 773 238 52 40 chr3 37720272 37720431 -180316727 + MIR SINE MIR 88 253 -9 2098 120 0 3 chr3 37720459 37720789 -180316369 - AluSq SINE Alu 0 329 1 1241 227 40 0 chr3 37720822 37721095 -180316063 - LTR16A1 LTR ERVL -5 452 169 474 161 137 16 chr3 37722330 37722454 -180314704 + L1MA9 LINE L1 5126 5264 -882 1305 181 69 20 chr3 37722454 37722533 -180314625 + L1MA9 LINE L1 5698 5772 -540 468 0 0 0 chr3 37722533 37722585 -180314573 + (CA)n Simple_repeat Simple_repeat 2 53 0 1305 181 69 20 chr3 37722585 37722808 -180314350 + L1MA9 LINE L1 5772 6015 -297 4658 181 126 88 chr3 37722953 37723502 -180313656 - L1MC3 LINE L1 -1 7784 7257 230 286 18 71 chr3 37723502 37723614 -180313544 - MLT1F1 LTR MaLR -427 140 35 4658 181 126 88 chr3 37723614 37724501 -180312657 - L1MC3 LINE L1 -528 7257 6179 375 226 97 45 chr3 37724682 37724837 -180312321 + MIR SINE MIR 53 215 -47 411 21 0 0 chr3 37725559 37725607 -180311551 + (CA)n Simple_repeat Simple_repeat 1 48 0 194 229 16 82 chr3 37725795 37725856 -180311302 + MIR3 SINE MIR 113 169 -39 380 217 50 25 chr3 37726957 37727077 -180310081 + MER103 DNA DNA 27 149 -17 656 286 168 58 chr3 37727128 37727570 -180309588 - MLT1G1 LTR MaLR -8 534 68 482 259 9 0 chr3 37727730 37727842 -180309316 - MER97a DNA MER1_type? -712 182 70 874 131 74 6 chr3 37727844 37728019 -180309139 - MER53 DNA DNA 0 189 3 465 362 63 5 chr3 37728135 37728342 -180308816 + MIR SINE MIR 20 238 -24 249 354 7 14 chr3 37728889 37729033 -180308125 + C-rich Low_complexity Low_complexity 2 144 0 609 171 0 0 chr3 37729185 37729302 -180307856 + CT-rich Low_complexity Low_complexity 2 118 0 21 0 0 0 chr3 37730094 37730115 -180307043 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 37730939 37730967 -180306191 + AT_rich Low_complexity Low_complexity 1 28 0 509 277 189 6 chr3 37731395 37731731 -180305427 + LTR33A LTR ERVL 67 504 -19 2496 138 33 24 chr3 37732316 37732773 -180304385 - L1MA4 LINE L1 0 6300 5840 460 224 219 0 chr3 37732964 37733129 -180304029 - MIR SINE MIR -1 261 67 13970 158 24 36 chr3 37734788 37735798 -180301360 - L1 LINE L1 -1886 5679 4658 204 40 0 0 chr3 37735798 37735823 -180301335 + (TC)n Simple_repeat Simple_repeat 1 25 0 2037 122 0 0 chr3 37735823 37736101 -180301057 - AluSx SINE Alu -32 280 3 13970 158 24 36 chr3 37736101 37739067 -180298091 - L1 LINE L1 -2906 4659 1760 225 0 0 0 chr3 37739067 37739092 -180298066 + (TC)n Simple_repeat Simple_repeat 2 26 0 13970 158 24 36 chr3 37739092 37739529 -180297629 - L1 LINE L1 -5805 1760 1319 711 265 89 124 chr3 37739783 37740220 -180296938 + MLT1G LTR MaLR 15 436 -106 231 114 0 0 chr3 37740225 37740260 -180296898 + MLT1G LTR MaLR 556 590 0 488 268 73 92 chr3 37740636 37740950 -180296208 + MLT1I LTR MaLR 79 386 -23 232 239 15 15 chr3 37741303 37741370 -180295788 - L1MC5 LINE L1 -78 7883 7817 527 264 8 0 chr3 37741586 37741715 -180295443 - MER94 DNA DNA -1 133 4 697 251 29 11 chr3 37741893 37742068 -180295090 - MER45A DNA AcHobo 0 178 1 211 329 25 13 chr3 37742255 37742334 -180294824 - MIR SINE MIR -181 81 2 569 246 99 37 chr3 37743170 37743361 -180293797 + MIR SINE MIR 12 214 -48 249 378 0 0 chr3 37744286 37744360 -180292798 + ORSL DNA AcHobo 202 275 0 1078 188 28 86 chr3 37744518 37744842 -180292316 - MER46C DNA MER2_type -32 306 2 280 333 19 19 chr3 37744906 37745014 -180292144 - MIR SINE MIR -108 154 47 192 40 0 0 chr3 37745836 37745861 -180291297 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 607 229 33 19 chr3 37746312 37746562 -180290596 + L1M2 LINE L1 5200 5446 -705 849 266 65 80 chr3 37746571 37747121 -180290037 - MER34 LTR ERV1 0 542 1 1313 275 65 70 chr3 37747128 37747815 -180289343 + L1ME3A LINE L1 5459 6142 -28 1201 199 42 10 chr3 37748655 37748961 -180288197 - LTR37A LTR ERV1 0 426 111 1846 123 43 14 chr3 37749546 37749822 -180287336 + AluSg SINE Alu 3 286 -24 200 304 0 0 chr3 37750383 37750439 -180286719 + CT-rich Low_complexity Low_complexity 3 58 0 8945 73 13 2 chr3 37752366 37754345 -180282813 - L1PA7 LINE L1 -20 6134 4138 2303 110 0 0 chr3 37755032 37755331 -180281827 - AluSc SINE Alu -10 299 1 598 245 40 20 chr3 37755334 37755485 -180281673 - MIR SINE MIR -104 158 5 2146 110 0 10 chr3 37756210 37756510 -180280648 + AluSc SINE Alu 1 297 -12 265 304 76 0 chr3 37757667 37757759 -180279399 - MIR SINE MIR -70 192 94 664 287 12 18 chr3 37757812 37757976 -180279182 - MER5A DNA MER1_type 0 189 27 1270 235 6 42 chr3 37758840 37759193 -180277965 + MER58B DNA MER1_type 2 341 0 315 203 0 0 chr3 37759887 37759961 -180277197 - L1MB7 LINE L1 -3 6181 6108 414 181 29 0 chr3 37759965 37760070 -180277088 + (TA)n Simple_repeat Simple_repeat 2 109 0 4384 230 82 29 chr3 37760071 37760681 -180276477 - L1MB7 LINE L1 -93 6091 5515 2526 166 22 0 chr3 37760681 37761098 -180276060 - MSTB LTR MaLR 0 426 1 4384 230 82 29 chr3 37761098 37761352 -180275806 - L1MB7 LINE L1 -669 5515 5276 2402 63 3 0 chr3 37761352 37761639 -180275519 - AluY SINE Alu -23 288 1 4384 230 82 29 chr3 37761639 37763213 -180273945 - L1MB7 LINE L1 -908 5276 3526 253 357 54 38 chr3 37763274 37763459 -180273699 - LTR16C LTR ERVL -196 295 108 350 290 11 0 chr3 37763574 37763667 -180273491 - Tigger7 DNA MER2_type -4 2483 2390 * 1055 233 20 0 chr3 37763665 37763867 -180273291 - Tigger7 DNA MER2_type -2220 267 62 1359 323 67 49 chr3 37764694 37766020 -180271138 - ERVL LTR ERVL -898 4597 3155 3670 96 146 131 chr3 37766021 37767447 -180269711 - pTR5 LTR ERV1 0 2606 1524 857 302 42 29 chr3 37767421 37767732 -180269426 - ERVL LTR ERVL -2474 3180 2866 * 490 368 38 17 chr3 37767719 37768010 -180269148 - ERVL LTR ERVL -4078 1686 1390 * 1746 183 51 0 chr3 37768106 37768440 -180268718 - MLT1A1 LTR MaLR -14 351 1 402 305 23 8 chr3 37768796 37768954 -180268204 + MLT1J2 LTR MaLR 1 160 -249 907 200 71 78 chr3 37768963 37769258 -180267900 - MLT1B LTR MaLR 0 390 98 304 227 144 10 chr3 37769877 37769974 -180267184 + MLT1I LTR MaLR 299 408 -1 3458 152 95 19 chr3 37770313 37770984 -180266174 + MER72 LTR ERV1 1 722 0 21 36 0 0 chr3 37771117 37771145 -180266013 + AT_rich Low_complexity Low_complexity 1 28 0 457 320 44 19 chr3 37772100 37772306 -180264852 + MIR SINE MIR 15 225 -37 2058 132 139 13 chr3 37772398 37772778 -180264380 + MSTA LTR MaLR 1 428 0 376 329 22 15 chr3 37772812 37772949 -180264209 - MIR SINE MIR -123 139 2 2434 75 0 31 chr3 37773308 37773629 -180263529 - AluY SINE Alu 0 311 1 194 329 92 0 chr3 37773821 37773897 -180263261 + MIR3 SINE MIR 5 87 -121 228 35 0 0 chr3 37774125 37774154 -180263004 + (TG)n Simple_repeat Simple_repeat 1 29 0 351 320 0 8 chr3 37774335 37774457 -180262701 - LTR67 LTR ERVL -19 538 418 2340 101 0 0 chr3 37774627 37774924 -180262234 - AluSx SINE Alu -15 297 1 183 186 0 0 chr3 37775385 37775428 -180261730 + T-rich Low_complexity Low_complexity 1 43 0 2929 173 26 9 chr3 37776219 37776757 -180260401 + MER44D DNA MER2_type 1 602 -3 29 78 0 0 chr3 37776844 37776908 -180260250 + AT_rich Low_complexity Low_complexity 1 64 0 1010 346 177 19 chr3 37777358 37778557 -180258601 + L3 LINE CR1 189 1576 -1 245 333 124 7 chr3 37779012 37779165 -180257993 - MIR SINE MIR -11 251 81 203 175 0 0 chr3 37779334 37779374 -180257784 + A-rich Low_complexity Low_complexity 1 40 0 317 259 108 57 chr3 37781150 37781308 -180255850 - MIR SINE MIR -59 203 38 448 283 107 83 chr3 37783709 37783999 -180253159 - L2 LINE L2 0 3272 2976 244 250 39 86 chr3 37785611 37785739 -180251419 - MLT1J LTR MaLR -66 445 324 237 255 101 20 chr3 37786141 37786290 -180250868 - L1M2 LINE L1 -848 5452 5292 1253 197 12 37 chr3 37786755 37786999 -180250159 + MER8 DNA MER2_type 2 239 0 787 287 69 23 chr3 37787407 37787668 -180249490 + MER54A LTR ERVL 303 575 -326 26 30 0 0 chr3 37789020 37789053 -180248105 + AT_rich Low_complexity Low_complexity 1 33 0 396 0 0 0 chr3 37789442 37789486 -180247672 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr3 37789536 37789557 -180247601 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr3 37789827 37789866 -180247292 + AT_rich Low_complexity Low_complexity 1 39 0 32 86 0 0 chr3 37791090 37791171 -180245987 + AT_rich Low_complexity Low_complexity 1 81 0 258 295 107 54 chr3 37791532 37791644 -180245514 - L2 LINE L2 -8 3305 3188 185 178 22 0 chr3 37792347 37792392 -180244766 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 216 0 0 0 chr3 37792757 37792781 -180244377 + (T)n Simple_repeat Simple_repeat 1 24 0 318 211 23 113 chr3 37795069 37795132 -180242026 - Charlie8 DNA MER1_type -185 145 99 1843 163 0 3 chr3 37795132 37795421 -180241737 + AluJb SINE Alu 1 288 -24 318 211 23 113 chr3 37795421 37795490 -180241668 - Charlie8 DNA MER1_type -231 99 25 459 239 2 42 chr3 37795914 37796034 -180241124 + MLT1E LTR MaLR 57 170 -397 1028 196 4 52 chr3 37897360 37897589 -180139569 + MER20 DNA MER1_type 2 219 0 2041 122 3 7 chr3 37897989 37898283 -180138875 + AluSc SINE Alu 4 296 -13 183 42 0 0 chr3 37898707 37898731 -180138427 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1510 215 11 4 chr3 37899593 37899872 -180137286 - AluJb SINE Alu -29 283 3 424 231 0 0 chr3 37902099 37902110 -180135048 + FRAM/FAM SINE Alu 1 3 -173 672 205 0 8 chr3 37902110 37902227 -180134931 + FLAM_A SINE Alu 4 119 -14 1207 142 44 93 chr3 37902714 37903058 -180134100 + THE1C LTR MaLR 1 327 -48 198 330 0 11 chr3 37903306 37903394 -180133764 + MIR SINE MIR 175 261 -1 22 56 0 0 chr3 37904137 37904173 -180132985 + AT_rich Low_complexity Low_complexity 1 36 0 6125 92 0 6 chr3 37904641 37905870 -180131288 - L1PA7 LINE L1 -13 6141 4895 25 69 0 0 chr3 37905994 37906023 -180131135 + GC_rich Low_complexity Low_complexity 1 29 0 362 116 20 68 chr3 37906026 37906172 -180130986 + G-rich Low_complexity Low_complexity 4 142 0 8319 118 1 0 chr3 37906177 37907492 -180129666 + L1P LINE L1 3765 5081 -1065 1904 164 0 22 chr3 37907677 37907995 -180129163 + AluJo SINE Alu 1 311 -1 243 0 0 0 chr3 37908021 37908048 -180129110 + (TA)n Simple_repeat Simple_repeat 1 27 0 410 288 209 0 chr3 37908170 37908361 -180128797 - MIR SINE MIR -29 233 3 1479 180 31 7 chr3 37909418 37909707 -180127451 + L1MB5 LINE L1 5871 6166 -8 287 273 71 13 chr3 37910189 37910343 -180126815 - LTR16B LTR ERVL -90 374 212 3823 110 33 3 chr3 37911811 37912394 -180124764 - LTR43 LTR ERV1 -2 600 1 225 326 56 34 chr3 37912748 37912926 -180124232 + MIR SINE MIR 66 247 -15 183 250 23 0 chr3 37914637 37914681 -180122477 + L2 LINE L2 3211 3255 -17 34 55 0 0 chr3 37916013 37916068 -180121090 + AT_rich Low_complexity Low_complexity 1 55 0 783 162 48 54 chr3 37917643 37917810 -180119348 + MER21B LTR ERV1 8 173 -690 4054 61 2 2 chr3 37917814 37918370 -180118788 + L1P LINE L1 4332 4887 -1259 1830 166 24 0 chr3 37918490 37918863 -180118295 - L1 LINE L1 -911 5235 4854 226 200 0 0 chr3 37918973 37919013 -180118145 + MIR SINE MIR 77 116 -146 2224 120 0 7 chr3 37919283 37919568 -180117590 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr3 37919568 37919592 -180117566 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2224 120 0 7 chr3 37919592 37919606 -180117552 + AluSx SINE Alu 285 298 -14 1839 164 3 7 chr3 37919613 37919912 -180117246 + AluSx SINE Alu 5 302 -10 12302 83 9 1 chr3 37920411 37922140 -180115018 - L1P LINE L1 -4393 1753 11 212 333 93 33 chr3 37922163 37922463 -180114695 - L2 LINE L2 -587 2727 2410 * 299 242 0 0 chr3 37922461 37922523 -180114635 - MIR SINE MIR 0 262 201 549 49 24 0 chr3 37923837 37923919 -180113239 + L1P LINE L1 4395 4478 -1668 395 243 155 7 chr3 37925234 37925419 -180111739 + L1M4 LINE L1 5600 5813 -371 6237 177 24 8 chr3 37925532 37926841 -180110317 - L1 LINE L1 -1483 4663 3334 5103 118 20 7 chr3 37926973 37927823 -180109335 - L1MA3 LINE L1 -92 6213 5353 460 346 91 18 chr3 37928119 37928460 -180108698 + L1M4 LINE L1 4487 4852 -1294 212 197 0 16 chr3 37928496 37928557 -180108601 + C-rich Low_complexity Low_complexity 2 61 0 397 177 31 3 chr3 37928795 37928907 -180108251 - L1MB8 LINE L1 0 6178 6068 250 290 0 0 chr3 37928960 37929022 -180108136 + L2 LINE L2 3251 3312 -1 186 287 20 129 chr3 37929946 37930047 -180107111 - MER5A DNA MER1_type -28 161 72 5695 144 35 20 chr3 37930467 37931482 -180105676 + HSMAR2 DNA Mariner 273 1302 0 275 237 44 0 chr3 37931516 37931630 -180105528 + (TA)n Simple_repeat Simple_repeat 2 120 0 388 263 167 26 chr3 37931759 37932043 -180105115 + MER102b DNA MER1_type 1 338 -3 722 259 85 22 chr3 37932683 37932907 -180104251 + MIR SINE MIR 15 252 -10 21 0 0 0 chr3 37933232 37933253 -180103905 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 37933467 37933495 -180103663 + AT_rich Low_complexity Low_complexity 1 28 0 2121 94 11 4 chr3 37933524 37933833 -180103325 - AluSc SINE Alu 0 311 1 254 219 0 44 chr3 37934641 37934801 -180102357 + A-rich Low_complexity Low_complexity 3 155 0 43 76 0 0 chr3 37934811 37934903 -180102255 + AT_rich Low_complexity Low_complexity 1 92 0 320 264 108 85 chr3 37935024 37935299 -180101859 + L1MC/D LINE L1 5354 5636 -587 1273 203 31 22 chr3 37935331 37935651 -180101507 - MER58B DNA MER1_type -6 335 13 2387 56 3 10 chr3 37935740 37936044 -180101114 + AluY SINE Alu 1 302 -9 183 246 49 16 chr3 37936442 37936503 -180100655 - L2 LINE L2 -592 2722 2660 1826 154 0 8 chr3 37936745 37937012 -180100146 + AluSx SINE Alu 1 265 -47 33 0 0 0 chr3 37937012 37937045 -180100113 + AT_rich Low_complexity Low_complexity 1 33 0 243 0 0 0 chr3 37937467 37937494 -180099664 + (A)n Simple_repeat Simple_repeat 1 27 0 271 235 35 35 chr3 37937744 37937829 -180099329 + CT-rich Low_complexity Low_complexity 4 88 0 272 242 16 24 chr3 37937831 37937955 -180099203 + C-rich Low_complexity Low_complexity 3 125 0 886 173 83 0 chr3 37939441 37939597 -180097561 + FAM SINE Alu 1 169 -6 229 200 25 88 chr3 37939597 37939677 -180097481 + L1MA4 LINE L1 6132 6206 -94 6351 119 10 14 chr3 37941616 37942724 -180094434 - L1P LINE L1 -1990 4156 3053 1347 72 12 0 chr3 37942860 37943027 -180094131 - AluSg/x SINE Alu -53 259 91 2836 3 0 19 chr3 37943593 37943911 -180093247 - AluYb8 SINE Alu -6 312 1 2773 10 0 0 chr3 37944556 37944858 -180092300 - AluY SINE Alu -9 302 1 242 313 39 86 chr3 37946598 37946726 -180090432 - L2 LINE L2 -35 3237 3116 885 200 5 54 chr3 37946820 37947025 -180090133 - MER3 DNA MER1_type -14 195 1 566 121 0 44 chr3 37947265 37947356 -180089802 - AluSg/x SINE Alu -24 285 199 204 264 0 0 chr3 37947367 37947420 -180089738 + C-rich Low_complexity Low_complexity 6 58 0 * 212 208 0 83 chr3 37947384 37947480 -180089678 + CT-rich Low_complexity Low_complexity 2 89 0 900 186 87 58 chr3 37947606 37947881 -180089277 - THE1C LTR MaLR -92 283 1 4425 112 3 45 chr3 37947889 37948637 -180088521 - THE1C-int LTR MaLR -8 1572 857 222 64 21 43 chr3 37948849 37948896 -180088262 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 1950 158 118 2 chr3 37950613 37951069 -180086089 - Tigger2 DNA MER2_type -2209 509 1 353 284 87 0 chr3 37952777 37952904 -180084254 - MIR SINE MIR -72 190 53 326 289 77 10 chr3 37953502 37953606 -180083552 + MIR3 SINE MIR 89 199 -9 214 256 179 0 chr3 37954261 37954339 -180082819 + L2 LINE L2 3219 3310 -3 249 330 19 9 chr3 37954603 37954709 -180082449 + MIR SINE MIR 28 134 -128 2016 158 3 0 chr3 37955020 37955323 -180081835 - AluSx SINE Alu -8 304 1 22 0 0 0 chr3 37956129 37956151 -180081007 + AT_rich Low_complexity Low_complexity 1 22 0 321 213 25 25 chr3 37957149 37957229 -180079929 - Alu SINE Alu -15 285 206 608 292 134 5 chr3 37958910 37959112 -180078046 - MIR SINE MIR -22 240 13 445 216 49 10 chr3 37959634 37959736 -180077422 - L1PA15 LINE L1 -2 6163 6058 4112 241 82 20 chr3 37959966 37961082 -180076076 + L1M2b LINE L1 29 1213 -5996 7537 152 11 3 chr3 37961182 37962330 -180074828 + L1PA12 LINE L1 1093 2248 -5333 22 35 0 0 chr3 37963138 37963167 -180073991 + AT_rich Low_complexity Low_complexity 1 29 0 592 228 112 80 chr3 37963728 37963952 -180073206 - MIR SINE MIR -30 232 2 202 271 34 17 chr3 38064898 38064957 -179972201 - MIR SINE MIR -91 171 112 497 338 54 13 chr3 38064999 38065313 -179971845 + L2 LINE L2 1856 2182 -1132 351 0 0 0 chr3 38065335 38065374 -179971784 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1177 216 157 44 chr3 38065374 38065782 -179971376 - MER39 LTR ERV1 -31 676 223 229 309 41 10 chr3 38065775 38065872 -179971286 - LTR48B LTR ERV1 -541 103 4 * 245 346 58 32 chr3 38066151 38066307 -179970851 - MIR3 SINE MIR -31 177 18 505 304 20 20 chr3 38067053 38067201 -179969957 - MIR3 SINE MIR 0 208 61 592 236 22 33 chr3 38068152 38068334 -179968824 - L1M4 LINE L1 -2272 3874 3695 3824 104 35 199 chr3 38068340 38069339 -179967819 + Tigger1 DNA MER2_type 388 1222 -1196 781 195 154 5 chr3 38069371 38069566 -179967592 + Tigger1 DNA MER2_type 2185 2408 -10 330 280 60 0 chr3 38069657 38069757 -179967401 - MIR SINE MIR -38 224 119 242 353 44 19 chr3 38070979 38071151 -179966007 + MIR SINE MIR 35 206 -56 2288 168 32 43 chr3 38071733 38072240 -179964918 - L1MB7 LINE L1 -14 6406 5906 4053 180 43 23 chr3 38072246 38073151 -179964007 - L1MC2 LINE L1 -8 6336 5414 5009 137 72 87 chr3 38073154 38074286 -179962872 + MER52C LTR ERV1 31 1146 -132 254 173 0 27 chr3 38074286 38074361 -179962797 - L1MC2 LINE L1 -2642 5353 5281 * 760 229 3 0 chr3 38074344 38074514 -179962644 - L1MB7 LINE L1 -513 5907 5758 * 1382 42 31 0 chr3 38074511 38074704 -179962454 - L1PA4 LINE L1 -2819 3327 3129 17333 27 7 1 chr3 38074704 38077537 -179959621 + L1PA4 LINE L1 3317 6154 -1 504 225 0 0 chr3 38077548 38077669 -179959489 - L1MB7 LINE L1 -644 5775 5655 * 855 267 54 40 chr3 38077665 38078088 -179959070 - L1MB7 LINE L1 -3922 2462 2034 1179 168 44 134 chr3 38078089 38078476 -179958682 - MLT1A1 LTR MaLR -10 355 4 2093 215 45 39 chr3 38078522 38078611 -179958547 - L1MB7 LINE L1 -4497 1887 1800 2583 44 0 28 chr3 38078611 38078931 -179958227 - AluY SINE Alu 0 311 1 2093 215 45 39 chr3 38078931 38079463 -179957695 - L1MB7 LINE L1 -4584 1800 1262 * 11472 195 37 21 chr3 38079439 38079824 -179957334 - L1MA4A LINE L1 -274 6265 5888 1927 180 71 17 chr3 38079824 38080230 -179956928 + MSTA LTR MaLR 1 428 0 11472 195 37 21 chr3 38080230 38081717 -179955441 - L1MA4A LINE L1 -651 5888 4427 186 43 0 0 chr3 38081717 38081740 -179955418 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11472 195 37 21 chr3 38081740 38083344 -179953814 - L1MA4A LINE L1 -2112 4427 2720 10030 243 53 49 chr3 38083346 38086235 -179950923 - L1MA4A LINE L1 -3945 2904 6 379 303 43 25 chr3 38087682 38087844 -179949314 - MLT1J2 LTR MaLR 0 450 286 299 284 59 10 chr3 38087941 38088043 -179949115 - MLT1J2 LTR MaLR -302 148 42 322 214 92 10 chr3 38088443 38088541 -179948617 + MIR3 SINE MIR 102 207 -1 311 306 33 25 chr3 38089039 38089160 -179947998 + MIR SINE MIR 32 153 -109 2497 67 0 3 chr3 38089176 38089488 -179947670 - AluY SINE Alu 0 311 1 315 71 0 0 chr3 38090546 38090588 -179946570 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 362 285 6 44 chr3 38090764 38090922 -179946236 + CT-rich Low_complexity Low_complexity 1 152 0 1240 214 133 41 chr3 38091063 38091475 -179945683 - MLT1C LTR MaLR 0 467 18 602 236 129 0 chr3 38093897 38094051 -179943107 + MER5A DNA MER1_type 4 180 -9 754 226 162 4 chr3 38095253 38095488 -179941670 - MLT1L LTR MaLR -2 613 342 533 250 169 7 chr3 38095843 38095991 -179941167 - MER5A DNA MER1_type -9 180 9 1753 187 7 3 chr3 38096303 38096602 -179940556 + AluSx SINE Alu 1 300 -12 437 203 77 4 chr3 38097113 38097237 -179939921 + MER3 DNA MER1_type 1 140 -69 23 68 0 0 chr3 38097462 38097506 -179939652 + AT_rich Low_complexity Low_complexity 1 44 0 220 143 24 0 chr3 38098168 38098210 -179938948 + (TA)n Simple_repeat Simple_repeat 2 44 0 318 277 34 42 chr3 38098210 38098448 -179938710 + L1ME LINE L1 5544 5779 -342 2268 98 0 3 chr3 38098735 38099058 -179938100 - AluSq SINE Alu 0 322 1 235 262 162 24 chr3 38099407 38099614 -179937544 - MLT1J LTR MaLR -72 543 232 21 36 0 0 chr3 38099991 38100019 -179937139 + AT_rich Low_complexity Low_complexity 1 28 0 1122 262 85 29 chr3 38100120 38100498 -179936660 - LTR16C LTR ERVL -22 469 71 472 329 33 7 chr3 38100637 38100789 -179936369 - MIR SINE MIR -101 161 6 483 194 10 41 chr3 38101763 38101861 -179935297 - MER63A DNA MER1_type -6 204 110 576 285 54 31 chr3 38101861 38102121 -179935037 - L1ME3 LINE L1 -83 6079 5814 714 123 31 223 chr3 38102131 38102423 -179934735 + MER33 DNA MER1_type 2 237 -87 1516 209 67 13 chr3 38102424 38102812 -179934346 - MLT1C LTR MaLR 0 467 59 455 187 33 0 chr3 38102864 38102955 -179934203 + MER33 DNA MER1_type 231 324 0 328 269 72 59 chr3 38103087 38103126 -179934032 - L1ME LINE L1 -5105 965 928 2222 124 0 0 chr3 38103126 38103424 -179933734 + AluSx SINE Alu 1 298 -14 328 269 72 59 chr3 38103424 38103594 -179933564 - L1ME LINE L1 -5142 928 816 2086 143 0 6 chr3 38105366 38105680 -179931478 - AluSx SINE Alu 0 312 1 1708 263 57 11 chr3 38105910 38106454 -179930704 - L1ME2 LINE L1 -9 6950 6382 1001 257 84 60 chr3 38106481 38106860 -179930298 - L1ME2 LINE L1 -3925 3197 2828 858 267 32 5 chr3 38106860 38107077 -179930081 + MER58A DNA MER1_type 2 224 0 1001 257 84 60 chr3 38107077 38107257 -179929901 - L1ME2 LINE L1 -4294 2828 2621 1801 150 10 38 chr3 38107257 38107570 -179929588 - AluSx SINE Alu -8 304 1 1001 257 84 60 chr3 38107570 38107605 -179929553 - L1ME2 LINE L1 -4501 2621 2588 1454 251 53 55 chr3 38107643 38107792 -179929366 - L1ME2 LINE L1 -4690 2432 2284 2208 104 7 3 chr3 38107792 38108099 -179929059 + AluSq SINE Alu 1 308 -5 1454 251 53 55 chr3 38108099 38108717 -179928441 - L1ME2 LINE L1 -4838 2284 1666 627 306 17 13 chr3 38108759 38108991 -179928167 - L1ME2 LINE L1 -4968 1455 1223 245 282 68 19 chr3 38109459 38109562 -179927596 - L1ME2 LINE L1 -5294 1129 1022 483 238 90 63 chr3 38109565 38109754 -179927404 - L1ME2 LINE L1 -5981 442 249 3504 214 27 9 chr3 38109767 38110608 -179926550 - L1P LINE L1 -921 5225 4370 * 5176 135 15 4 chr3 38110606 38111429 -179925729 + L1PA16 LINE L1 5327 6158 -8 7275 42 1 0 chr3 38111489 38112381 -179924777 - L1PA5 LINE L1 -1376 4770 3878 7168 46 10 1 chr3 38112381 38113767 -179923391 + L1PA5 LINE L1 4761 6154 0 324 251 47 93 chr3 38113775 38113990 -179923168 - L1ME2 LINE L1 -6200 223 19 3924 170 41 10 chr3 38115143 38115926 -179921232 - L1PA16 LINE L1 0 6166 5360 23 0 0 0 chr3 38116560 38116583 -179920575 + AT_rich Low_complexity Low_complexity 1 23 0 390 203 0 0 chr3 38116615 38116684 -179920474 + MER5A DNA MER1_type 1 69 -120 380 316 8 8 chr3 38116684 38116714 -179920444 - L1MA10 LINE L1 -27 6307 6278 503 296 28 33 chr3 38116714 38116927 -179920231 - L1ME1 LINE L1 -47 6119 5908 2411 176 26 36 chr3 38116933 38117467 -179919691 - L1MC2 LINE L1 0 6344 5816 21 0 0 0 chr3 38117467 38117488 -179919670 + AT_rich Low_complexity Low_complexity 1 21 0 648 213 8 0 chr3 38117488 38117610 -179919548 - FLAM_C SINE Alu -18 125 3 2810 186 51 3 chr3 38117612 38118226 -179918932 - L1MC2 LINE L1 -519 5825 5185 1636 230 29 36 chr3 38118232 38118438 -179918720 - L1ME1 LINE L1 -272 5894 5688 1570 204 3 7 chr3 38118438 38118732 -179918426 - AluJb SINE Alu -18 294 2 1636 230 29 36 chr3 38118732 38118972 -179918186 - L1ME1 LINE L1 -478 5688 5451 267 200 63 42 chr3 38118970 38119065 -179918093 - L1ME1 LINE L1 -1364 4782 4686 * 698 277 94 0 chr3 38119147 38119360 -179917798 + Charlie1 DNA MER1_type 6 238 -2523 497 238 8 8 chr3 38119347 38119469 -179917689 + Charlie1 DNA MER1_type 2623 2744 -17 * 2822 169 9 30 chr3 38120991 38121907 -179915251 + L1P4 LINE L1 4876 5768 -395 207 0 0 0 chr3 38121909 38121932 -179915226 + (TA)n Simple_repeat Simple_repeat 1 23 0 1615 143 0 4 chr3 38122100 38122372 -179914786 - AluY SINE Alu -40 271 1 2997 150 3 22 chr3 38123211 38123878 -179913280 + L1PA16 LINE L1 5135 5768 -398 459 194 0 0 chr3 38123881 38123974 -179913184 + (TA)n Simple_repeat Simple_repeat 2 94 0 2364 118 10 15 chr3 38123974 38124183 -179912975 + L1PA16 LINE L1 5776 5984 -182 1801 149 49 35 chr3 38124183 38124553 -179912605 - THE1C LTR MaLR 0 375 1 2364 118 10 15 chr3 38124553 38124733 -179912425 + L1PA16 LINE L1 5984 6163 -3 32 57 0 0 chr3 38125147 38125200 -179911958 + AT_rich Low_complexity Low_complexity 1 53 0 691 194 4 15 chr3 38125394 38125634 -179911524 + AluJb SINE Alu 3 298 -14 414 0 0 0 chr3 38125816 38125862 -179911296 + (TG)n Simple_repeat Simple_repeat 1 46 0 2304 85 0 3 chr3 38126305 38126610 -179910548 + AluY SINE Alu 1 304 -7 562 299 26 0 chr3 38127068 38127222 -179909936 - MER63A DNA MER1_type 0 210 53 468 246 120 42 chr3 38127578 38127745 -179909413 - MER5A DNA MER1_type 0 189 10 231 114 0 0 chr3 38127907 38127942 -179909216 + (T)n Simple_repeat Simple_repeat 1 35 0 265 265 29 0 chr3 38129301 38129369 -179907789 + GA-rich Low_complexity Low_complexity 3 72 0 2898 6 0 0 chr3 38130703 38131020 -179906138 + AluYb8 SINE Alu 1 317 -1 391 147 29 0 chr3 38131052 38131120 -179906038 - L1MC3 LINE L1 -19 7766 7697 710 172 18 61 chr3 38131135 38131298 -179905860 - L1MC3 LINE L1 -278 7507 7352 636 210 19 6 chr3 38131298 38131455 -179905703 + L1MD1 LINE L1 6083 6241 -1 185 0 40 0 chr3 38132309 38132334 -179904824 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 1119 234 9 0 chr3 38133702 38133924 -179903234 - MER58A DNA MER1_type 0 224 1 1999 152 63 78 chr3 38135278 38135752 -179901406 + MLT1C LTR MaLR 1 467 0 22 0 0 0 chr3 38136733 38136755 -179900403 + AT_rich Low_complexity Low_complexity 1 22 0 236 322 68 75 chr3 38137031 38137323 -179899835 + L1MEd LINE L1 513 802 -5317 249 327 38 6 chr3 38137486 38137645 -179899513 + L1MEd LINE L1 904 1067 -5052 473 320 8 0 chr3 38137833 38138092 -179899066 + L1MEd LINE L1 2587 2847 -3282 770 286 116 45 chr3 38138297 38138891 -179898267 - HAL1 LINE L1 -621 1886 1251 337 341 118 4 chr3 38138977 38139206 -179897952 + MIR SINE MIR 8 262 0 341 332 153 26 chr3 38139221 38139534 -179897624 - HAL1 LINE L1 -1365 1142 790 21 0 0 0 chr3 38139853 38139874 -179897284 + AT_rich Low_complexity Low_complexity 1 21 0 559 227 86 73 chr3 38139964 38140091 -179897067 + MER58A DNA MER1_type 2 135 -2285 1709 133 53 30 chr3 38140091 38140392 -179896766 + AluSg1 SINE Alu 2 309 0 559 227 86 73 chr3 38140392 38140484 -179896674 + MER58A DNA MER1_type 135 224 0 25 51 0 0 chr3 38140568 38140607 -179896551 + AT_rich Low_complexity Low_complexity 1 39 0 3939 161 38 13 chr3 38140700 38142077 -179895081 + L1MB3 LINE L1 18 1602 -4782 * 4458 203 26 8 chr3 38142065 38143091 -179894067 + L1MB3 LINE L1 5354 6416 -3 3877 234 65 18 chr3 38143093 38144194 -179892964 + L1MD2 LINE L1 5186 6340 -19 219 88 0 0 chr3 38144326 38144360 -179892798 + (TC)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 38145255 38145279 -179891879 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 38146847 38146883 -179890275 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 38146978 38147006 -179890152 + AT_rich Low_complexity Low_complexity 1 28 0 504 0 0 0 chr3 38147090 38147146 -179890012 + (TG)n Simple_repeat Simple_repeat 2 57 0 1423 24 0 0 chr3 38147536 38147740 -179889418 + L1PA4 LINE L1 5972 6175 0 180 0 0 0 chr3 38147778 38147798 -179889360 + (TAA)n Simple_repeat Simple_repeat 2 21 0 675 232 11 50 chr3 38147923 38148104 -179889054 - MER69A DNA AcHobo 0 177 4 517 173 45 0 chr3 38148430 38148540 -179888618 + L1MA4 LINE L1 6181 6295 -5 419 233 6 126 chr3 38149832 38149991 -179887167 + MIR SINE MIR 3 142 -120 7966 227 68 33 chr3 38150026 38150387 -179886771 - L1MC/D LINE L1 -502 6134 5787 1619 201 3 10 chr3 38150387 38150690 -179886468 - AluJo SINE Alu -11 301 1 7966 227 68 33 chr3 38150690 38151788 -179885370 - L1MC/D LINE L1 -849 5787 4729 2138 117 0 0 chr3 38151788 38152086 -179885072 - AluSx SINE Alu -14 298 1 7966 227 68 33 chr3 38152086 38155318 -179881840 - L1MC/D LINE L1 -1907 4729 1167 1475 189 3 54 chr3 38155324 38155428 -179881730 + AluJb SINE Alu 7 115 -197 2616 118 0 3 chr3 38155428 38155793 -179881365 + THE1B LTR MaLR 1 364 0 10062 122 18 28 chr3 38155793 38157389 -179879769 + THE1B-int LTR MaLR 1 1580 0 2472 86 5 62 chr3 38157391 38157775 -179879383 + THE1B LTR MaLR 3 364 0 1475 189 3 54 chr3 38157775 38157979 -179879179 + AluJb SINE Alu 115 303 -9 4108 250 84 6 chr3 38157981 38159046 -179878112 - L1MC/D LINE L1 -5367 1173 26 180 0 0 0 chr3 38159097 38159117 -179878041 + (TA)n Simple_repeat Simple_repeat 2 21 0 717 249 6 45 chr3 38159629 38159806 -179877352 + MER5A DNA MER1_type 1 170 -19 353 286 191 6 chr3 38159861 38160029 -179877129 + MIR SINE MIR 64 262 0 475 273 201 5 chr3 38160943 38161152 -179876006 - MIR SINE MIR 0 262 13 182 422 60 18 chr3 38161713 38161931 -179875227 + L3 LINE CR1 209 435 -1142 770 68 0 0 chr3 38162884 38162987 -179874171 + AluY SINE Alu 209 311 0 462 270 104 74 chr3 38163427 38163657 -179873501 - MIR SINE MIR -11 251 15 470 255 60 13 chr3 38163808 38163957 -179873201 - L1ME3A LINE L1 -9 6161 6006 902 272 51 44 chr3 38163969 38164288 -179872870 - L1ME3A LINE L1 -404 5766 5442 2416 46 30 16 chr3 38164288 38164593 -179872565 - AluY SINE Alu 0 311 3 902 272 51 44 chr3 38164593 38164663 -179872495 - L1ME3A LINE L1 -728 5442 5374 253 256 49 12 chr3 38166679 38166761 -179870397 + MLT1K LTR MaLR 504 588 0 252 59 0 0 chr3 38166815 38166849 -179870309 + (T)n Simple_repeat Simple_repeat 1 34 0 309 231 0 26 chr3 38167294 38167372 -179869786 - L1P LINE L1 -1052 5094 5019 537 89 13 0 chr3 38167373 38167452 -179869706 - MER57B-int LTR ERV1 -2151 5386 5307 * 1330 153 32 20 chr3 38167443 38168013 -179869145 - MER57B-int LTR ERV1 -1986 4277 734 23804 78 8 4 chr3 38168013 38172134 -179865024 - L1PA7 LINE L1 0 6154 2020 2537 160 30 0 chr3 38172156 38172562 -179864596 - MER57B-int LTR ERV1 -5241 705 288 * 4175 151 21 6 chr3 38172559 38173221 -179863937 - MER57B-int LTR ERV1 -6865 672 1 2892 125 7 0 chr3 38173221 38173652 -179863506 - MER57B LTR ERV1 0 434 1 1147 138 0 0 chr3 38173656 38173837 -179863321 + L1PB3 LINE L1 20 200 -6663 5724 108 200 15 chr3 38173839 38174845 -179862313 + L1PB3 LINE L1 636 1827 -5036 8396 214 25 24 chr3 38174847 38176932 -179860226 + L1PB3 LINE L1 3816 5901 -961 1223 201 61 4 chr3 38176935 38177198 -179859960 - L1 LINE L1 -1777 4369 4092 5757 95 44 0 chr3 38177198 38177769 -179859389 + L1PB1 LINE L1 5190 5816 -335 351 0 0 0 chr3 38177769 38177808 -179859350 + (TA)n Simple_repeat Simple_repeat 1 39 0 5757 95 44 0 chr3 38177808 38178160 -179858998 + L1PB1 LINE L1 5816 6151 0 5066 117 42 9 chr3 38178167 38178977 -179858181 + L1PB3 LINE L1 6030 6866 -4 937 242 54 4 chr3 38179148 38179408 -179857750 + ORSL DNA AcHobo 1 273 -2 35 54 0 0 chr3 38182498 38182554 -179854604 + AT_rich Low_complexity Low_complexity 1 56 0 792 223 73 15 chr3 38182554 38182760 -179854398 + MER20 DNA MER1_type 1 218 -1 228 67 0 0 chr3 38182779 38182809 -179854349 + (TATG)n Simple_repeat Simple_repeat 3 32 0 481 256 8 16 chr3 38183409 38183530 -179853628 + MER5C DNA MER1_type 1 120 -204 1151 142 0 0 chr3 38183726 38183902 -179853256 + AluSg/x SINE Alu 128 303 -9 894 274 94 32 chr3 38184146 38184519 -179852639 - MLT1I LTR MaLR -8 401 6 186 293 259 26 chr3 38184668 38184784 -179852374 + MIR SINE MIR 54 196 -66 10547 182 49 6 chr3 38185517 38188416 -179848742 - L1PA15 LINE L1 -266 5899 2877 1582 181 58 4 chr3 38188478 38188754 -179848404 + AluSx SINE Alu 3 293 -19 1145 236 97 20 chr3 38188925 38189372 -179847786 + MLT1H LTR MaLR 5 526 -4 515 194 0 0 chr3 38189536 38189639 -179847519 - MLT1D LTR MaLR 0 505 403 2213 250 38 2 chr3 38189645 38190225 -179846933 - MLT1D-int LTR MaLR -765 606 6 1684 200 63 78 chr3 38190230 38190740 -179846418 - MLT1D LTR MaLR 0 505 4 1597 146 42 0 chr3 38191169 38191432 -179845726 + AluSg SINE Alu 35 307 0 219 145 13 26 chr3 38191579 38191655 -179845503 + (TATAA)n Simple_repeat Simple_repeat 2 76 0 477 371 25 17 chr3 38192950 38193190 -179843968 + MIR SINE MIR 2 243 -19 180 348 0 0 chr3 38193798 38193844 -179843314 - MIR SINE MIR 0 262 217 338 244 118 16 chr3 38194947 38195074 -179842084 - MER117 DNA MER1_type -50 147 8 846 191 52 0 chr3 38195373 38195583 -179841575 + L1MA4 LINE L1 6074 6294 -6 416 263 184 66 chr3 38198302 38198667 -179838491 + MLT1H LTR MaLR 130 537 -12 2341 60 0 3 chr3 38198983 38199291 -179837867 + AluY SINE Alu 1 307 0 344 266 71 9 chr3 38199612 38199725 -179837433 + L2 LINE L2 3192 3311 -2 223 333 0 29 chr3 38199843 38199912 -179837246 + L2 LINE L2 3200 3266 -6 6718 177 14 18 chr3 38200955 38202122 -179835036 - L1PA14 LINE L1 -1 6160 4996 1846 162 0 3 chr3 38202122 38202412 -179834746 - AluSx SINE Alu -23 289 1 6718 177 14 18 chr3 38202412 38203386 -179833772 - L1PA14 LINE L1 -1165 4996 4020 1233 224 6 22 chr3 38203386 38203707 -179833451 + L1P LINE L1 2645 2960 -3186 4386 178 49 20 chr3 38205997 38206200 -179830958 + L1P LINE L1 2941 3137 -3009 2008 145 0 3 chr3 38206200 38206489 -179830669 + AluSq SINE Alu 1 288 -25 4386 178 49 20 chr3 38206489 38207328 -179829830 + L1P LINE L1 3137 4009 -2137 264 267 13 27 chr3 38207329 38207404 -179829754 - L2 LINE L2 -20 3293 3220 521 259 0 0 chr3 38207436 38207544 -179829614 - MIR SINE MIR -149 113 6 391 154 13 0 chr3 38207554 38207632 -179829526 - L1MC2 LINE L1 -1 6343 6265 257 366 105 41 chr3 38207790 38208208 -179828950 - L2 LINE L2 0 3272 2828 365 314 40 0 chr3 38209072 38209196 -179827962 - MLT1J LTR MaLR -112 399 271 221 282 69 40 chr3 38209244 38209315 -179827843 - L2 LINE L2 -2442 872 805 1633 99 177 4 chr3 38209315 38209582 -179827576 + AluSg1 SINE Alu 1 309 0 221 282 69 40 chr3 38209582 38209683 -179827475 - L2 LINE L2 -2509 805 694 11621 247 47 34 chr3 38209757 38217076 -179820082 - L1PB3 LINE L1 -2 6868 3 22 0 0 0 chr3 38217091 38217113 -179820045 + AT_rich Low_complexity Low_complexity 1 22 0 229 295 54 30 chr3 38217391 38217557 -179819601 - HAL1b LINE L1 -442 906 737 22 70 0 0 chr3 38217719 38217762 -179819396 + AT_rich Low_complexity Low_complexity 1 43 0 801 295 75 106 chr3 38218098 38218854 -179818304 - HAL1 LINE L1 -961 1546 814 265 382 16 0 chr3 38219070 38219193 -179817965 - LTR67 LTR ERVL -2 555 431 384 354 24 41 chr3 38219305 38219551 -179817607 - LTR67 LTR ERVL -296 261 20 1073 232 9 0 chr3 38220256 38220476 -179816682 - MER58A DNA MER1_type -2 222 1 21 0 0 0 chr3 38221033 38221054 -179816104 + AT_rich Low_complexity Low_complexity 1 21 0 688 261 29 24 chr3 38222014 38222221 -179814937 + MIR SINE MIR 1 208 -54 405 198 47 0 chr3 38222280 38222366 -179814792 - MER5A DNA MER1_type -83 106 17 215 222 0 0 chr3 38222424 38222469 -179814689 + (CAT)n Simple_repeat Simple_repeat 1 45 0 195 281 31 16 chr3 38222515 38222579 -179814579 + L2 LINE L2 3171 3235 -78 209 328 62 8 chr3 38222656 38222784 -179814374 + L2 LINE L2 2221 2355 -959 5014 169 31 6 chr3 38223197 38223847 -179813311 + L1M1 LINE L1 4310 4942 -1358 306 50 0 0 chr3 38223847 38223887 -179813271 + (TC)n Simple_repeat Simple_repeat 1 40 0 5014 169 31 6 chr3 38223887 38224501 -179812657 + L1M1 LINE L1 4942 5607 -693 * 32176 36 38 2 chr3 38224499 38228501 -179808657 - L1P LINE L1 -1999 4147 2 719 296 109 57 chr3 38228671 38229341 -179807817 - HAL1 LINE L1 -1163 1344 640 585 339 53 12 chr3 38229457 38229779 -179807379 - HAL1 LINE L1 -2090 417 83 1703 188 7 13 chr3 38229785 38230089 -179807069 + AluSx SINE Alu 1 302 -10 411 56 0 0 chr3 38230484 38230538 -179806620 + (TG)n Simple_repeat Simple_repeat 1 54 0 540 301 77 29 chr3 38231238 38231484 -179805674 - MIR SINE MIR 0 262 5 1837 115 41 4 chr3 38232499 38232768 -179804390 + AluSg SINE Alu 14 292 -18 23 0 0 0 chr3 38232783 38232806 -179804352 + AT_rich Low_complexity Low_complexity 1 23 0 1003 182 155 54 chr3 38232868 38233164 -179803994 + MLT1A1 LTR MaLR 1 326 -39 248 314 92 22 chr3 38233504 38233689 -179803469 - LTR33A LTR ERVL -27 496 299 189 147 0 0 chr3 38233826 38233860 -179803298 + (TA)n Simple_repeat Simple_repeat 1 34 0 495 321 69 33 chr3 38233991 38234424 -179802734 - L1M4 LINE L1 -2644 3502 3047 220 227 0 15 chr3 38234433 38234499 -179802659 + (TA)n Simple_repeat Simple_repeat 2 66 0 307 250 136 21 chr3 38234791 38234931 -179802227 - L1MEd LINE L1 -5283 836 681 2239 135 34 17 chr3 38235124 38235480 -179801678 + THE1B LTR MaLR 1 362 -2 10773 108 33 1 chr3 38235482 38237013 -179800145 + THE1B-int LTR MaLR 1 1580 0 2410 133 11 0 chr3 38237013 38237373 -179799785 + THE1B LTR MaLR 1 364 0 904 188 19 48 chr3 38237470 38237677 -179799481 - MLT1A2 LTR MaLR 0 374 174 320 164 15 0 chr3 38237681 38237748 -179799410 + GA-rich Low_complexity Low_complexity 1 68 0 717 200 48 14 chr3 38237748 38237893 -179799265 - MLT1A2 LTR MaLR -189 176 27 2073 118 0 51 chr3 38239708 38240022 -179797136 - AluSx SINE Alu -14 298 1 1995 143 0 3 chr3 38240871 38241172 -179795986 - AluSc SINE Alu -9 300 1 26 30 0 0 chr3 38242478 38242511 -179794647 + AT_rich Low_complexity Low_complexity 1 33 0 237 310 28 0 chr3 38242584 38242655 -179794503 + HsTC2 DNA Tc2 1 73 -1825 346 255 6 104 chr3 38242713 38242784 -179794374 + HsTC2 DNA Tc2 1144 1220 -678 2636 90 3 0 chr3 38242784 38243138 -179794020 + THE1A LTR MaLR 1 355 0 346 255 6 104 chr3 38243138 38243200 -179793958 + HsTC2 DNA Tc2 1220 1287 -611 5052 73 15 0 chr3 38243200 38243872 -179793286 - L1PA8 LINE L1 0 6172 5491 346 255 6 104 chr3 38243872 38243996 -179793162 + HsTC2 DNA Tc2 1287 1543 -355 256 247 99 12 chr3 38244777 38244858 -179792300 - MIR SINE MIR -74 188 101 8054 37 1 1 chr3 38244858 38245853 -179791305 - L1P LINE L1 -3052 3094 2100 7390 32 6 9 chr3 38245853 38246842 -179790316 + L1PA3 LINE L1 4916 5909 -246 2740 13 0 0 chr3 38246842 38247142 -179790016 - AluYa5 SINE Alu -11 300 1 7390 32 6 9 chr3 38247142 38247389 -179789769 + L1PA3 LINE L1 5909 6155 0 332 321 9 0 chr3 38247865 38247971 -179789187 + MIR3 SINE MIR 102 208 0 728 151 8 0 chr3 38248002 38248121 -179789037 + AluJb SINE Alu 1 120 -192 2075 157 94 0 chr3 38248162 38248557 -179788601 + MSTB1 LTR MaLR 1 432 0 232 254 48 56 chr3 38248696 38248822 -179788336 + MIR SINE MIR 74 198 -64 308 299 29 29 chr3 38249387 38249524 -179787634 - MER5A DNA MER1_type -6 183 47 3861 146 23 0 chr3 38250620 38251271 -179785887 + L1PA16 LINE L1 5496 6161 -5 27 62 0 0 chr3 38251313 38251361 -179785797 + AT_rich Low_complexity Low_complexity 1 48 0 368 289 182 13 chr3 38251718 38251877 -179785281 + MIR SINE MIR 11 196 -66 235 308 128 8 chr3 38253840 38253957 -179783201 - L2 LINE L2 -1 3312 3182 193 222 0 37 chr3 38254110 38254164 -179782994 - L2 LINE L2 -240 3073 3022 337 227 23 31 chr3 38254203 38254331 -179782827 - L1ME4a LINE L1 -5 6116 5990 180 313 62 42 chr3 38254666 38254762 -179782396 + MIR SINE MIR 165 262 0 29 28 0 0 chr3 38254908 38254944 -179782214 + AT_rich Low_complexity Low_complexity 1 36 0 863 309 83 47 chr3 38255136 38255687 -179781471 + MLT1K LTR MaLR 10 580 -8 327 302 87 27 chr3 38257979 38258128 -179779030 + MIR SINE MIR 61 218 -44 504 277 31 31 chr3 38258150 38258309 -179778849 - MIR SINE MIR -28 234 76 222 62 0 0 chr3 38261388 38261420 -179775738 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2144 133 3 0 chr3 38261420 38261722 -179775436 - AluSx SINE Alu -9 303 1 2294 108 0 13 chr3 38262268 38262583 -179774575 + AluSx SINE Alu 1 311 -1 475 207 0 11 chr3 38263209 38263296 -179773862 + MER5A DNA MER1_type 2 87 -102 187 325 115 58 chr3 38263386 38263577 -179773581 - L3b LINE CR1 -5 1578 1377 1870 165 0 10 chr3 38263685 38263988 -179773170 - AluSx SINE Alu -12 300 1 1657 191 27 12 chr3 38265310 38265646 -179771512 - MER58B DNA MER1_type 0 341 1 316 196 0 0 chr3 38267125 38267181 -179769977 - MER103 DNA DNA -52 114 59 22 35 0 0 chr3 38267383 38267412 -179769746 + AT_rich Low_complexity Low_complexity 1 29 0 1132 144 90 0 chr3 38267767 38267968 -179769190 - MER20 DNA MER1_type 0 219 1 189 107 0 0 chr3 38268966 38268994 -179768164 + (GGGAA)n Simple_repeat Simple_repeat 2 29 0 492 231 22 7 chr3 38270442 38270627 -179766531 - MER58A DNA MER1_type 0 224 5 285 312 0 0 chr3 38271546 38271623 -179765535 + CT-rich Low_complexity Low_complexity 2 78 0 348 278 7 86 chr3 38271707 38271858 -179765300 + L2 LINE L2 2586 2724 -590 277 308 112 0 chr3 38272175 38272282 -179764876 + L2 LINE L2 3190 3308 -5 31 0 0 0 chr3 38272899 38272930 -179764228 + AT_rich Low_complexity Low_complexity 1 31 0 1514 215 3 10 chr3 38272930 38273228 -179763930 - AluJo SINE Alu -16 296 1 260 275 9 9 chr3 38273546 38273655 -179763503 + (TA)n Simple_repeat Simple_repeat 2 110 0 431 284 78 27 chr3 38273770 38274108 -179763050 - MLT1L LTR MaLR -52 563 108 2220 109 0 3 chr3 38274407 38274711 -179762447 + AluSc SINE Alu 1 303 -6 183 129 0 0 chr3 38274808 38274839 -179762319 + (TATG)n Simple_repeat Simple_repeat 2 32 0 211 205 0 0 chr3 38275023 38275062 -179762096 + CT-rich Low_complexity Low_complexity 2 40 0 3377 200 32 20 chr3 38275913 38276668 -179760490 - L1MB3 LINE L1 -2 6181 5418 180 0 0 0 chr3 38276923 38276943 -179760215 + (T)n Simple_repeat Simple_repeat 1 20 0 611 310 10 5 chr3 38276980 38277180 -179759978 - L2 LINE L2 -1 3312 3112 1592 211 141 98 chr3 38277184 38277809 -179759349 - MLT1E1 LTR MaLR -2 652 1 491 289 80 30 chr3 38277921 38278122 -179759036 - L2 LINE L2 -337 2977 2767 2419 172 32 22 chr3 38278274 38278774 -179758384 - L1MC2 LINE L1 -26 6318 5814 1365 180 20 0 chr3 38278791 38279041 -179758117 - L1PA16 LINE L1 -10 6156 5902 267 79 0 0 chr3 38280703 38280741 -179756417 + (CA)n Simple_repeat Simple_repeat 1 38 0 5983 147 73 30 chr3 38280758 38281378 -179755780 - Tigger3b DNA MER2_type -1798 1230 638 2184 125 0 7 chr3 38281378 38281682 -179755476 - AluSx SINE Alu -10 302 1 5983 147 73 30 chr3 38281682 38282240 -179754918 - Tigger3b DNA MER2_type -2390 638 1 2600 62 0 0 chr3 38282361 38282670 -179754488 - AluY SINE Alu -2 309 1 1035 193 18 49 chr3 38282986 38283209 -179753949 + MER58A DNA MER1_type 7 222 -2 196 245 191 11 chr3 38284181 38284275 -179752883 + L2 LINE L2 2170 2280 -1034 435 347 21 7 chr3 38284305 38284449 -179752709 + L2 LINE L2 3123 3268 -4 248 218 0 13 chr3 38284897 38284975 -179752183 + GA-rich Low_complexity Low_complexity 4 80 0 631 268 33 38 chr3 38285147 38285360 -179751798 - MIR SINE MIR -50 212 1 298 345 148 27 chr3 38285378 38285599 -179751559 - MIR SINE MIR -14 248 1 256 48 48 0 chr3 38286789 38286831 -179750327 + (CA)n Simple_repeat Simple_repeat 2 45 0 2171 75 0 0 chr3 38287317 38287584 -179749574 + AluY SINE Alu 34 300 -11 2144 123 0 3 chr3 38288582 38288884 -179748274 - AluSq SINE Alu -12 301 1 531 261 112 21 chr3 38289246 38289434 -179747724 + MIR SINE MIR 57 261 -1 325 306 153 28 chr3 38289625 38289841 -179747317 + LTR16C LTR ERVL 67 309 -182 3889 144 69 90 chr3 38289857 38290773 -179746385 - MER4D LTR ERV1 0 872 1 180 0 0 0 chr3 38290877 38290897 -179746261 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 626 284 7 58 chr3 38290949 38291224 -179745934 + MIR SINE MIR 2 262 0 2241 230 42 76 chr3 38291758 38292332 -179744826 - L1ME2 LINE L1 -1 6163 5571 2273 103 3 0 chr3 38292332 38292634 -179744524 - AluSg SINE Alu -7 303 1 2070 119 7 7 chr3 38292636 38292931 -179744227 - AluSq SINE Alu -18 295 1 2241 230 42 76 chr3 38292931 38292957 -179744201 - L1ME2 LINE L1 -594 5570 5545 2294 87 10 0 chr3 38292957 38293256 -179743902 + AluSp SINE Alu 1 302 -11 2241 230 42 76 chr3 38293256 38293511 -179743647 - L1ME2 LINE L1 -619 5545 5333 1008 326 45 0 chr3 38293744 38294075 -179743083 + LTR16C LTR ERVL 138 483 -8 2198 114 0 0 chr3 38294958 38295248 -179741910 - AluY SINE Alu -21 290 1 352 345 54 37 chr3 38295288 38295584 -179741574 - L2 LINE L2 -979 2335 2035 331 248 200 0 chr3 38298924 38299049 -179738109 + L1MC/D LINE L1 5543 5692 -2116 784 271 77 92 chr3 38299103 38299825 -179737333 - L2 LINE L2 -1 3312 2616 776 290 57 4 chr3 38300087 38300157 -179737001 - MIR SINE MIR 0 262 197 333 0 0 0 chr3 38300157 38300194 -179736964 + (CA)n Simple_repeat Simple_repeat 1 37 0 776 290 57 4 chr3 38300194 38300371 -179736787 - MIR SINE MIR -65 197 2 2096 206 20 39 chr3 38301520 38302031 -179735127 - MLT1D LTR MaLR 0 505 5 180 111 0 0 chr3 38302963 38302990 -179734168 + (T)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr3 38303254 38303274 -179733884 + (A)n Simple_repeat Simple_repeat 1 20 0 765 244 205 21 chr3 38303948 38304085 -179733073 + Charlie2 DNA MER1_type 28 139 -2643 449 229 98 0 chr3 38304085 38304207 -179732951 - MER94 DNA DNA 0 134 1 765 244 205 21 chr3 38304207 38304401 -179732757 + Charlie2 DNA MER1_type 139 420 -2362 476 192 83 0 chr3 38304411 38304531 -179732627 + Charlie2 DNA MER1_type 2729 2858 -4 273 264 47 28 chr3 38304805 38304911 -179732247 - MLT1L LTR MaLR -2 613 506 1384 272 70 93 chr3 38304919 38305519 -179731639 + MLT1G LTR MaLR 10 590 0 295 264 0 0 chr3 38305541 38305613 -179731545 - MLT1L LTR MaLR -131 484 413 2741 135 28 12 chr3 38305752 38306248 -179730910 - L1MA8 LINE L1 -5 7705 7202 910 192 77 0 chr3 38306279 38306461 -179730697 - L1MA8 LINE L1 -709 7001 6806 3784 192 25 15 chr3 38306462 38307347 -179729811 - L1MA8 LINE L1 -2368 5197 4304 589 178 89 6 chr3 38307341 38307498 -179729660 - L1MA8 LINE L1 -3968 3597 3428 * 2367 249 70 12 chr3 38307518 38307613 -179729545 - L1 LINE L1 -3240 3866 3778 381 22 0 0 chr3 38307613 38307659 -179729499 + (TA)n Simple_repeat Simple_repeat 2 47 0 2367 249 70 12 chr3 38307659 38308550 -179728608 - L1 LINE L1 -3328 3778 2815 721 215 0 0 chr3 38308569 38308699 -179728459 - FLAM_C SINE Alu -11 132 3 2676 239 133 45 chr3 38308704 38310119 -179727039 - L1 LINE L1 -4324 2782 1433 2321 173 33 74 chr3 38310119 38310697 -179726461 - MLT2B3 LTR ERVL 0 554 1 2676 239 133 45 chr3 38310697 38311325 -179725833 - L1 LINE L1 -5673 1433 861 269 305 24 0 chr3 38311327 38311409 -179725749 - MLT1L LTR MaLR -531 84 1 27 18 7 0 chr3 38311521 38311597 -179725561 + AT_rich Low_complexity Low_complexity 1 34 0 239 273 0 142 chr3 38311851 38312027 -179725131 - L2 LINE L2 -2 3311 3161 435 358 33 17 chr3 38312122 38312362 -179724796 + MIR SINE MIR 15 258 -4 25 51 0 0 chr3 38313125 38313164 -179723994 + AT_rich Low_complexity Low_complexity 1 39 0 500 231 146 42 chr3 38314143 38314451 -179722707 - L1ME3A LINE L1 -225 5945 5606 365 274 57 5 chr3 38314515 38314727 -179722431 - L1ME3A LINE L1 -786 5360 5138 342 285 93 104 chr3 38315194 38315742 -179721416 - L1MC4a LINE L1 -1914 5894 5353 279 179 18 0 chr3 38317629 38317685 -179719473 - MIR SINE MIR -11 251 195 841 322 79 15 chr3 38317703 38318107 -179719051 - MLT1J2 LTR MaLR -18 432 3 537 306 109 30 chr3 38318127 38318559 -179718599 - L2 LINE L2 -81 3232 2785 586 298 73 15 chr3 38318568 38318773 -179718385 - MIR SINE MIR -37 225 9 229 385 78 8 chr3 38319994 38320117 -179717041 + MIR3 SINE MIR 14 145 -103 296 341 0 0 chr3 38320785 38320870 -179716288 - L2 LINE L2 0 3313 3229 2530 61 0 3 chr3 38321007 38321318 -179715840 - AluY SINE Alu -1 310 1 215 277 96 43 chr3 38321462 38321556 -179715602 + MIR3 SINE MIR 101 199 -9 355 321 75 27 chr3 38321649 38321836 -179715322 + MER117 DNA MER1_type 2 197 0 321 358 15 22 chr3 38322144 38322281 -179714877 + L2 LINE L2 3134 3269 -3 21 0 0 0 chr3 38324144 38324165 -179712993 + AT_rich Low_complexity Low_complexity 1 21 0 378 333 48 0 chr3 38324730 38324898 -179712260 - MIR SINE MIR -3 259 84 360 88 18 0 chr3 38327242 38327299 -179709859 + THE1B-int LTR MaLR 1523 1580 0 2297 109 22 30 chr3 38327299 38327666 -179709492 + THE1B LTR MaLR 1 364 0 634 289 83 8 chr3 38328055 38328297 -179708861 - MIR SINE MIR 0 262 3 355 264 132 18 chr3 38328479 38328646 -179708512 - MLT1J LTR MaLR -317 194 9 794 232 95 93 chr3 38329420 38329930 -179707228 - L2 LINE L2 -72 3241 2733 4267 324 43 18 chr3 38330139 38332816 -179704342 - ERVL LTR ERVL -358 5406 2625 1206 313 110 20 chr3 38332828 38333435 -179703723 - L2 LINE L2 -1078 2236 1575 429 20 0 0 chr3 38333608 38333658 -179703500 + (CA)n Simple_repeat Simple_repeat 2 51 0 1065 211 36 36 chr3 38334063 38334286 -179702872 - MER58A DNA MER1_type -1 223 1 2150 118 3 0 chr3 38334524 38334821 -179702337 + AluSx SINE Alu 1 298 -14 32 26 0 0 chr3 38334910 38334949 -179702209 + AT_rich Low_complexity Low_complexity 1 39 0 384 389 83 15 chr3 38335261 38335585 -179701573 + MLT1K LTR MaLR 82 427 -161 3588 52 4 4 chr3 38336039 38336503 -179700655 - L1PA8 LINE L1 0 6172 5709 302 288 54 9 chr3 38336606 38336717 -179700441 - MIR SINE MIR -30 232 117 192 200 0 0 chr3 38336731 38336761 -179700397 + MIR SINE MIR 116 145 -63 736 302 35 16 chr3 38337127 38337382 -179699776 + MIR SINE MIR 2 261 -1 463 259 97 21 chr3 38338934 38339815 -179697343 - HAL1 LINE L1 -100 2407 1278 216 330 55 0 chr3 38339823 38339914 -179697244 - L2 LINE L2 -503 2811 2716 775 298 123 11 chr3 38340019 38340546 -179696612 - L1MC4a LINE L1 -1642 6166 5581 2395 94 0 3 chr3 38340551 38340860 -179696298 - AluSq SINE Alu -5 308 1 324 285 24 32 chr3 38340880 38341003 -179696155 + MIR SINE MIR 4 125 -137 626 305 64 84 chr3 38341157 38341704 -179695454 - L2 LINE L2 -1615 1699 1164 244 210 62 49 chr3 38341911 38341992 -179695166 + MIR SINE MIR 171 252 -10 181 171 114 0 chr3 38341962 38341997 -179695161 + L2 LINE L2 3268 3306 -7 * 288 284 0 0 chr3 38343019 38343086 -179694072 + L2 LINE L2 3247 3313 0 21 82 0 0 chr3 38344205 38344254 -179692904 + AT_rich Low_complexity Low_complexity 1 49 0 2041 245 103 21 chr3 38344526 38345155 -179692003 - L1ME1 LINE L1 -2 6164 5484 306 50 0 0 chr3 38345162 38345202 -179691956 + (TC)n Simple_repeat Simple_repeat 1 40 0 1125 183 68 0 chr3 38345232 38345423 -179691735 - AluJo SINE Alu -108 204 1 437 162 33 0 chr3 38345424 38345578 -179691580 + CT-rich Low_complexity Low_complexity 1 159 0 2433 236 61 40 chr3 38345612 38345912 -179691246 - L1ME1 LINE L1 -706 5460 5168 2142 137 0 0 chr3 38345912 38346218 -179690940 - AluSx SINE Alu -6 306 1 2433 236 61 40 chr3 38346218 38346894 -179690264 - L1ME1 LINE L1 -998 5168 4463 322 312 71 0 chr3 38347196 38347320 -179689838 - MIR SINE MIR -56 152 18 200 94 0 31 chr3 38347416 38347448 -179689710 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 22 35 0 0 chr3 38347739 38347768 -179689390 + AT_rich Low_complexity Low_complexity 1 29 0 2394 251 38 56 chr3 38348015 38348120 -179689038 - L2 LINE L2 -48 3265 3160 2117 110 0 0 chr3 38348120 38348439 -179688719 + AluSg SINE Alu 1 319 0 1551 186 7 26 chr3 38348445 38348752 -179688406 + AluJb SINE Alu 1 301 -11 2394 251 38 56 chr3 38348752 38349644 -179687514 - L2 LINE L2 -158 3155 2274 328 312 14 64 chr3 38349601 38349742 -179687416 + MIR SINE MIR 8 141 -121 * 392 231 0 100 chr3 38349957 38350021 -179687137 - L2 LINE L2 -1035 2279 2233 2032 104 49 3 chr3 38350021 38350309 -179686849 - AluSg SINE Alu -7 303 3 392 231 0 100 chr3 38350309 38350374 -179686784 - L2 LINE L2 -1081 2233 2163 2067 112 6 19 chr3 38350455 38350796 -179686362 - AluY SINE Alu 0 311 1 286 247 80 87 chr3 38351734 38351953 -179685205 - MIR SINE MIR -34 228 7 234 267 50 40 chr3 38352305 38352406 -179684752 + L1MC4 LINE L1 6605 6706 -1336 26 98 0 0 chr3 38352482 38352564 -179684594 + AT_rich Low_complexity Low_complexity 1 82 0 226 23 45 114 chr3 38352564 38352652 -179684506 + (TTAA)n Simple_repeat Simple_repeat 2 83 0 379 206 54 11 chr3 38352685 38352777 -179684381 - L1ME3 LINE L1 -66 6096 6001 405 254 0 18 chr3 38352838 38352952 -179684206 - L1ME3 LINE L1 -450 5712 5601 453 302 45 45 chr3 38352962 38353207 -179683951 + L3b LINE CR1 1117 1361 -222 670 315 65 0 chr3 38353608 38353840 -179683318 + L1ME LINE L1 7 253 -5817 266 253 60 12 chr3 38354176 38354259 -179682899 + MER91C DNA MER1_type 31 117 -23 373 326 126 7 chr3 38354282 38354417 -179682741 - MER91A DNA MER1_type -45 151 1 1446 254 129 24 chr3 38354887 38355425 -179681733 - MLT1E2 LTR MaLR 0 505 1 2771 164 182 39 chr3 38355736 38356455 -179680703 - LTR1B LTR ERV1 -4 822 1 375 274 18 35 chr3 38356456 38356569 -179680589 - L2 LINE L2 -15 3298 3188 492 144 4 1 chr3 38358271 38358500 -179678658 + AluSc SINE Alu 36 297 -12 198 346 25 12 chr3 38358502 38358583 -179678575 - MIR SINE MIR -86 122 41 28 0 0 0 chr3 38358955 38358983 -179678175 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr3 38360711 38360735 -179676423 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1298 226 76 100 chr3 38360737 38361214 -179675944 + L1MC4 LINE L1 7345 7801 -241 2391 93 0 3 chr3 38361214 38361526 -179675632 + AluY SINE Alu 1 311 0 1298 226 76 100 chr3 38361526 38361761 -179675397 + L1MC4 LINE L1 7801 8040 -2 667 291 147 39 chr3 38361886 38362685 -179674473 + L2 LINE L2 2424 3312 -1 631 266 89 30 chr3 38362703 38363097 -179674061 - LTR33A LTR ERVL -4 519 66 2217 176 31 10 chr3 38363876 38364291 -179672867 + MSTB LTR MaLR 1 424 -2 192 316 11 32 chr3 38365287 38365382 -179671776 - MIR SINE MIR -38 224 132 2386 82 0 7 chr3 38365670 38365974 -179671184 + AluSp SINE Alu 1 302 -11 387 348 27 11 chr3 38366060 38366247 -179670911 - MIR3 SINE MIR 0 208 19 24 53 0 0 chr3 38366349 38366387 -179670771 + AT_rich Low_complexity Low_complexity 1 38 0 2090 119 0 45 chr3 38366447 38366759 -179670399 - AluSx SINE Alu -14 298 1 1591 127 92 50 chr3 38367169 38367452 -179669706 + AluSx SINE Alu 1 295 -17 489 76 0 0 chr3 38367455 38367521 -179669637 + (CA)n Simple_repeat Simple_repeat 2 67 0 23 54 0 0 chr3 38369104 38369141 -179668017 + AT_rich Low_complexity Low_complexity 1 37 0 419 315 34 0 chr3 38369761 38369910 -179667248 - MIR SINE MIR -35 227 74 474 240 50 75 chr3 38370208 38370408 -179666750 - LTR16A1 LTR ERVL 0 457 263 26 0 0 0 chr3 38370679 38370705 -179666453 + AT_rich Low_complexity Low_complexity 1 26 0 1989 131 0 0 chr3 38370705 38370979 -179666179 - AluSx SINE Alu -36 276 3 183 42 0 0 chr3 38371981 38372005 -179665153 + (CTTA)n Simple_repeat Simple_repeat 1 24 0 375 353 65 56 chr3 38372432 38372769 -179664389 + L2 LINE L2 2836 3175 -97 1067 217 65 70 chr3 38372903 38373258 -179663900 - LTR16A1 LTR ERVL -6 451 99 423 161 0 12 chr3 38373342 38373423 -179663735 + MADE1 DNA Mariner 1 80 0 326 200 0 0 chr3 38373446 38373506 -179663652 - MIR SINE MIR -12 250 191 289 265 24 112 chr3 38373638 38373808 -179663350 - MER104 DNA Tc2 -4 176 22 975 254 89 106 chr3 38375589 38376388 -179660770 - L2 LINE L2 -4 3309 2516 1903 171 3 20 chr3 38376469 38376819 -179660339 - MER2 DNA MER2_type 0 344 1 1104 307 83 7 chr3 38378090 38378546 -179658612 - L2 LINE L2 -5 3308 2818 866 193 0 6 chr3 38378649 38378810 -179658348 - L1PB4 LINE L1 -7 6149 5990 666 289 62 19 chr3 38379099 38379419 -179657739 + MLT1L LTR MaLR 74 327 -184 204 267 300 0 chr3 38381531 38381621 -179655537 - L2 LINE L2 -19 3294 3178 363 44 0 0 chr3 38381741 38381786 -179655372 + (CA)n Simple_repeat Simple_repeat 2 46 0 879 123 8 0 chr3 38383677 38383799 -179653359 + FLAM_C SINE Alu 1 123 -20 372 22 0 0 chr3 38383802 38383847 -179653311 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 532 151 0 0 chr3 38385247 38385340 -179651818 + L1MA1 LINE L1 6066 6158 -144 320 74 56 0 chr3 38385340 38385392 -179651766 + L1MA3 LINE L1 6249 6305 0 609 250 155 14 chr3 38385488 38385772 -179651386 - MER5C DNA MER1_type 0 324 1 637 163 35 99 chr3 38386197 38386399 -179650759 + MER53 DNA DNA 1 189 0 1854 193 100 0 chr3 38386898 38387287 -179649871 - MSTA LTR MaLR 0 428 1 337 221 202 38 chr3 38387675 38387992 -179649166 - L1ME4a LINE L1 -25 6096 5728 1756 218 19 36 chr3 38388179 38388592 -179648566 - MLT2D LTR ERVL -8 406 1 292 287 52 22 chr3 38388831 38388967 -179648191 + MIR SINE MIR 65 204 -58 1743 210 8 24 chr3 38389023 38389394 -179647764 - MLT1A1 LTR MaLR 0 365 1 1216 177 32 8 chr3 38389693 38389941 -179647217 + Tigger7 DNA MER2_type 2237 2490 -1 363 322 81 0 chr3 38389943 38390117 -179647041 - L2 LINE L2 0 3313 3126 324 277 98 18 chr3 38390311 38390423 -179646735 - MLT1I LTR MaLR -218 191 71 298 287 0 8 chr3 38390596 38390718 -179646440 - MER113 DNA MER1_type? -394 127 7 22 0 0 0 chr3 38391116 38391138 -179646020 + AT_rich Low_complexity Low_complexity 1 22 0 2225 113 0 0 chr3 38391358 38391649 -179645509 - AluSp SINE Alu -22 291 1 2080 141 0 0 chr3 38391872 38392171 -179644987 + AluSx SINE Alu 3 301 -11 406 321 70 21 chr3 38393007 38393194 -179643964 + L2 LINE L2 2782 2977 -337 221 258 287 18 chr3 38393207 38393374 -179643784 - MIR SINE MIR -12 250 39 408 337 68 40 chr3 38393475 38393727 -179643431 + L2 LINE L2 3031 3289 -24 491 307 177 36 chr3 38393783 38394295 -179642863 - L2 LINE L2 -5 3308 2736 184 219 0 0 chr3 38394357 38394389 -179642769 - MIR SINE MIR -114 148 117 180 0 0 0 chr3 38395140 38395160 -179641998 + (T)n Simple_repeat Simple_repeat 1 20 0 226 250 19 0 chr3 38395429 38395481 -179641677 + CT-rich Low_complexity Low_complexity 2 54 0 552 213 0 0 chr3 38395891 38396013 -179641145 + T-rich Low_complexity Low_complexity 1 122 0 211 139 23 0 chr3 38396254 38396297 -179640861 + T-rich Low_complexity Low_complexity 2 45 0 222 37 0 0 chr3 38399633 38399660 -179637498 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr3 38402591 38402620 -179634538 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 38402817 38402839 -179634319 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 38407255 38407280 -179629878 + AT_rich Low_complexity Low_complexity 1 25 0 214 317 0 0 chr3 38408752 38408834 -179628324 + T-rich Low_complexity Low_complexity 1 82 0 747 120 0 0 chr3 38410182 38410299 -179626859 + (TA)n Simple_repeat Simple_repeat 2 118 0 206 274 121 81 chr3 38413786 38413910 -179623248 - L2 LINE L2 -6 3266 3138 21 36 0 0 chr3 38414481 38414509 -179622649 + AT_rich Low_complexity Low_complexity 1 28 0 1201 180 0 9 chr3 38414536 38414747 -179622411 - MER2 DNA MER2_type -136 209 1 741 283 115 49 chr3 38414876 38415513 -179621645 + L1ME4a LINE L1 5282 5960 -161 215 379 79 11 chr3 38415958 38416148 -179621010 - L2 LINE L2 -946 2368 2166 223 186 34 17 chr3 38416523 38416582 -179620576 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 614 293 30 0 chr3 38416636 38416803 -179620355 - MER5A DNA MER1_type 0 189 18 22 0 0 0 chr3 38416907 38416929 -179620229 + AT_rich Low_complexity Low_complexity 1 22 0 1760 172 7 10 chr3 38416930 38417220 -179619938 - AluJo SINE Alu -23 289 1 21 0 0 0 chr3 38417299 38417320 -179619838 + AT_rich Low_complexity Low_complexity 1 21 0 229 307 13 27 chr3 38418086 38418161 -179618997 - MIR3 SINE MIR -7 201 128 2404 107 6 8 chr3 38418674 38419028 -179618130 - THE1A LTR MaLR -2 353 1 851 287 106 51 chr3 38419895 38420369 -179616789 + L2 LINE L2 2812 3311 -2 204 40 0 0 chr3 38421358 38421383 -179615775 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 26 64 0 0 chr3 38422785 38422832 -179614326 + AT_rich Low_complexity Low_complexity 1 47 0 261 241 0 0 chr3 38423198 38423252 -179613906 - L2 LINE L2 -5 3267 3214 248 309 0 0 chr3 38423293 38423348 -179613810 + L2 LINE L2 3198 3252 -20 213 65 0 0 chr3 38423645 38423676 -179613482 + (A)n Simple_repeat Simple_repeat 1 31 0 260 354 96 51 chr3 38423748 38424217 -179612941 - L2 LINE L2 -505 2809 2320 26 30 0 0 chr3 38424269 38424302 -179612856 + AT_rich Low_complexity Low_complexity 1 33 0 228 246 14 43 chr3 38424350 38424419 -179612739 - MIR SINE MIR -61 201 135 271 322 126 45 chr3 38424469 38425217 -179611941 - L2 LINE L2 -1150 2164 1357 216 167 0 0 chr3 38425823 38425859 -179611299 + (CAAAG)n Simple_repeat Simple_repeat 2 37 0 312 250 11 0 chr3 38426985 38427073 -179610085 - MER103 DNA DNA -71 95 7 419 299 11 17 chr3 38427449 38427626 -179609532 + CT-rich Low_complexity Low_complexity 1 176 0 263 231 222 9 chr3 38429282 38429390 -179607768 - MIR SINE MIR -104 158 28 192 261 15 62 chr3 38480533 38480598 -179556560 - L2 LINE L2 -2 3311 3250 707 307 12 16 chr3 38481097 38481348 -179555810 - MIR SINE MIR 0 262 13 2635 50 0 0 chr3 38481935 38482237 -179554921 + AluY SINE Alu 1 302 -9 296 140 20 0 chr3 38482315 38482365 -179554793 + MIR SINE MIR 91 141 -121 388 229 119 17 chr3 38482922 38483040 -179554118 - MIR3 SINE MIR -5 203 74 237 125 0 0 chr3 38483471 38483503 -179553655 - MLT1G1 LTR MaLR -319 276 245 234 302 112 26 chr3 38486775 38486891 -179550267 - L2 LINE L2 -225 3047 2922 2076 104 11 4 chr3 38487033 38487313 -179549845 + AluSq SINE Alu 1 282 -31 489 17 0 0 chr3 38487313 38487371 -179549787 + (CATA)n Simple_repeat Simple_repeat 1 58 0 464 268 33 58 chr3 38490201 38490375 -179546783 + MER69A DNA AcHobo 6 176 -1 1192 279 147 14 chr3 38490378 38490801 -179546357 + MER69 DNA AcHobo 89 567 -659 1284 222 84 23 chr3 38490852 38491280 -179545878 + MER69 DNA AcHobo 2073 2526 0 305 284 12 0 chr3 38494386 38494467 -179542691 - MER63 DNA MER1_type -2 1060 979 264 30 0 0 chr3 38494500 38494533 -179542625 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2375 79 0 28 chr3 38494766 38495084 -179542074 + AluY SINE Alu 1 309 -2 453 288 187 14 chr3 38495930 38496149 -179541009 - MIR SINE MIR 0 262 6 30 45 0 0 chr3 38496517 38496561 -179540597 + AT_rich Low_complexity Low_complexity 1 44 0 872 223 9 28 chr3 38497565 38497776 -179539382 + MER3 DNA MER1_type 2 208 -1 728 309 18 9 chr3 38497810 38498027 -179539131 + MIR SINE MIR 41 259 -3 464 250 17 0 chr3 38498192 38498308 -179538850 - MER94 DNA DNA -1 133 16 1702 110 9 100 chr3 38499005 38499324 -179537834 + AluSq SINE Alu 1 290 -23 1374 120 0 29 chr3 38499397 38499606 -179537552 + AluSg/x SINE Alu 105 307 -5 393 261 232 19 chr3 38500786 38500997 -179536161 - MIR SINE MIR -6 256 1 1081 179 5 33 chr3 38502134 38502346 -179534812 + MER20 DNA MER1_type 2 207 -12 654 218 158 0 chr3 38503039 38503204 -179533954 + MIR SINE MIR 24 214 -48 279 0 0 0 chr3 38503877 38503908 -179533250 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2247 112 7 0 chr3 38505229 38505534 -179531624 - AluSc SINE Alu -2 307 1 1872 172 0 13 chr3 38505655 38505969 -179531189 - AluJb SINE Alu 0 312 3 316 347 75 19 chr3 38506510 38506777 -179530381 - L2 LINE L2 -15 3298 2964 503 315 61 20 chr3 38507436 38507633 -179529525 - MIR SINE MIR -16 246 42 894 188 32 28 chr3 38507811 38508029 -179529129 + MER20 DNA MER1_type 1 219 0 222 118 0 0 chr3 38508739 38508773 -179528385 + (CAG)n Simple_repeat Simple_repeat 1 34 0 2151 51 3 111 chr3 38509600 38509932 -179527226 + AluY SINE Alu 1 296 -15 24 0 0 0 chr3 38510355 38510379 -179526779 + AT_rich Low_complexity Low_complexity 1 24 0 491 241 52 0 chr3 38510678 38510794 -179526364 - MER5A DNA MER1_type -31 158 37 301 280 10 10 chr3 38510915 38511015 -179526143 + MIR3 SINE MIR 82 181 -27 523 218 29 45 chr3 38511018 38511198 -179525960 - MER63A DNA MER1_type 0 210 33 320 414 6 6 chr3 38511616 38511778 -179525380 + MIR3 SINE MIR 32 193 -15 306 0 0 0 chr3 38511972 38512006 -179525152 + (TC)n Simple_repeat Simple_repeat 1 34 0 342 340 61 30 chr3 38512888 38513262 -179523896 - L2 LINE L2 -247 3066 2682 1262 40 0 0 chr3 38513553 38513703 -179523455 - L1PA3 LINE L1 -2 6153 6004 415 295 184 0 chr3 38515330 38515537 -179521621 - MIR SINE MIR -5 257 13 537 256 75 19 chr3 38515578 38515738 -179521420 - MER5B DNA MER1_type -4 174 6 190 294 20 0 chr3 38517239 38517290 -179519868 - L2 LINE L2 0 3272 3221 950 286 37 80 chr3 38517604 38518115 -179519043 - L2 LINE L2 -640 2674 2186 625 311 44 13 chr3 38518130 38518355 -179518803 - MIR SINE MIR -27 235 4 668 286 73 36 chr3 38518357 38518686 -179518472 - L2 LINE L2 -1135 2179 1839 216 0 0 0 chr3 38518732 38518756 -179518402 + (T)n Simple_repeat Simple_repeat 1 24 0 223 239 33 33 chr3 38518816 38518908 -179518250 + (TCTCTG)n Simple_repeat Simple_repeat 4 95 0 482 225 28 14 chr3 38519853 38519995 -179517163 - L1ME2 LINE L1 -1 6333 6022 217 267 81 29 chr3 38520085 38520221 -179516937 + MIR SINE MIR 23 262 0 2208 108 7 0 chr3 38520850 38521156 -179516002 - AluSq SINE Alu -5 308 1 216 388 0 0 chr3 38521369 38521454 -179515704 + MIR SINE MIR 18 102 -160 461 247 10 0 chr3 38522320 38522417 -179514741 - MER81 DNA DNA 0 114 17 343 242 51 101 chr3 38522424 38522602 -179514556 - MIR SINE MIR -57 205 37 240 324 20 20 chr3 38523926 38524028 -179513130 + MIR SINE MIR 31 132 -76 344 71 18 0 chr3 38524559 38524615 -179512543 + (CA)n Simple_repeat Simple_repeat 2 58 0 275 338 48 35 chr3 38524618 38524763 -179512395 + L2 LINE L2 3123 3269 -3 2879 192 11 73 chr3 38529055 38529749 -179507409 + MER82 DNA MER2_type 2 652 -1 26 30 0 0 chr3 38529841 38529874 -179507284 + AT_rich Low_complexity Low_complexity 1 33 0 424 356 42 93 chr3 38530790 38531106 -179506052 + L2 LINE L2 2437 2767 -505 1914 152 3 0 chr3 38531106 38531396 -179505762 + AluSx SINE Alu 1 291 -21 424 356 42 93 chr3 38531396 38531910 -179505248 + L2 LINE L2 2767 3237 -35 1153 216 107 28 chr3 38532054 38532373 -179504785 + MER2 DNA MER2_type 2 345 0 197 339 89 16 chr3 38533232 38533356 -179503802 - L2 LINE L2 -1 3271 3139 440 327 216 7 chr3 38533522 38533828 -179503330 - L3 LINE CR1 -4 1573 1204 595 203 86 63 chr3 38533896 38534118 -179503040 - MER112 DNA MER1_type -6 254 28 318 274 95 0 chr3 38534151 38534246 -179502912 - MER5A DNA MER1_type -85 104 1 236 210 25 12 chr3 38534343 38534424 -179502734 - Charlie7 DNA MER1_type -2474 138 57 287 198 33 66 chr3 38535357 38535414 -179501744 + MIR SINE MIR 67 121 -141 2231 77 3 68 chr3 38535414 38535740 -179501418 - AluY SINE Alu -6 305 1 287 198 33 66 chr3 38535740 38535773 -179501385 + MIR SINE MIR 121 154 -108 22 35 0 0 chr3 38539062 38539091 -179498067 + AT_rich Low_complexity Low_complexity 1 29 0 497 226 28 0 chr3 38541164 38541270 -179495888 - MER5A DNA MER1_type -77 112 4 365 340 11 54 chr3 38542980 38543259 -179493899 + L1ME3A LINE L1 5618 5884 -286 27 49 0 0 chr3 38543521 38543562 -179493596 + AT_rich Low_complexity Low_complexity 1 41 0 284 206 56 0 chr3 38543569 38543676 -179493482 + (TA)n Simple_repeat Simple_repeat 2 114 0 265 222 43 31 chr3 38543616 38543778 -179493380 + (TATAA)n Simple_repeat Simple_repeat 2 165 0 * 1174 208 4 17 chr3 38544532 38544763 -179492395 + AluJo SINE Alu 2 229 -83 585 217 59 13 chr3 38546115 38546267 -179490891 - L1ME3A LINE L1 -8 6162 6004 1885 122 7 11 chr3 38546268 38546539 -179490619 - AluSx SINE Alu -12 300 31 4521 123 106 91 chr3 38546542 38548133 -179489025 - pTR5 LTR ERV1 0 2438 750 229 150 125 0 chr3 38548133 38548173 -179488985 - AluSx SINE Alu -254 46 2 940 229 146 3 chr3 38548175 38548463 -179488695 - L1ME3A LINE L1 -159 6011 5683 2049 151 0 3 chr3 38549311 38549623 -179487535 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 38550816 38550840 -179486318 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr3 38551527 38551557 -179485601 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 224 98 0 24 chr3 38551607 38551648 -179485510 + (CAATA)n Simple_repeat Simple_repeat 3 42 0 1959 160 0 10 chr3 38551828 38552141 -179485017 - AluJb SINE Alu -1 311 2 2024 190 6 3 chr3 38552285 38552649 -179484509 - MLT1A1 LTR MaLR 0 365 1 260 346 109 19 chr3 38553135 38553346 -179483812 + MIR SINE MIR 20 249 -13 257 119 30 30 chr3 38553349 38553416 -179483742 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 27 0 0 0 chr3 38553594 38553621 -179483537 + AT_rich Low_complexity Low_complexity 1 27 0 380 361 87 0 chr3 38553813 38554021 -179483137 + Charlie8 DNA MER1_type 40 265 -2152 261 339 32 26 chr3 38554081 38554270 -179482888 - L2 LINE L2 -940 2374 2185 404 229 57 10 chr3 38554278 38554418 -179482740 + MER5A DNA MER1_type 1 188 -1 877 278 8 4 chr3 38555059 38555293 -179481865 + MIR SINE MIR 21 255 -7 371 373 93 10 chr3 38555965 38556158 -179481000 - MIR SINE MIR -34 228 20 2377 97 0 0 chr3 38556770 38557078 -179480080 - AluSg SINE Alu -2 308 1 1893 46 8 17 chr3 38557168 38557409 -179479749 + AluY SINE Alu 73 311 0 726 219 62 6 chr3 38557491 38557669 -179479489 + MER5A DNA MER1_type 1 188 -1 1908 173 68 0 chr3 38558310 38558675 -179478483 - MLT1B LTR MaLR 0 390 1 344 248 74 8 chr3 38561684 38561805 -179475353 - MIR SINE MIR 0 262 134 31 76 0 0 chr3 38561812 38561878 -179475280 + AT_rich Low_complexity Low_complexity 1 66 0 198 400 0 0 chr3 38561935 38562005 -179475153 - MIR SINE MIR -191 71 2 347 256 23 47 chr3 38562078 38562207 -179474951 - MIR SINE MIR -116 146 21 2350 99 0 0 chr3 38563836 38564138 -179473020 + AluSg SINE Alu 2 303 -7 63 0 0 0 chr3 38564202 38564265 -179472893 + AT_rich Low_complexity Low_complexity 1 63 0 257 258 67 11 chr3 38565422 38565511 -179471647 + Charlie7 DNA MER1_type 8 101 -2511 267 258 0 15 chr3 38565653 38565719 -179471439 + GA-rich Low_complexity Low_complexity 2 66 0 2435 74 0 0 chr3 38565784 38566082 -179471076 + AluY SINE Alu 1 298 -13 914 273 98 43 chr3 38566449 38566867 -179470291 - L2 LINE L2 -2514 800 360 551 234 94 57 chr3 38567371 38567563 -179469595 + MIR SINE MIR 14 212 -50 21 0 0 0 chr3 38567651 38567672 -179469486 + AT_rich Low_complexity Low_complexity 1 21 0 2124 105 23 13 chr3 38569482 38569788 -179467370 - AluSx SINE Alu -1 311 3 255 103 0 0 chr3 38570268 38570307 -179466851 + (A)n Simple_repeat Simple_repeat 1 39 0 2029 117 45 0 chr3 38571088 38571378 -179465780 - AluY SINE Alu -8 303 1 2494 83 0 0 chr3 38572056 38572368 -179464790 - AluSx SINE Alu 0 312 1 234 232 18 0 chr3 38572690 38572746 -179464412 + MIR SINE MIR 90 146 -62 198 0 0 0 chr3 38573457 38573479 -179463679 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 226 155 28 0 chr3 38574486 38574550 -179462608 + (TA)n Simple_repeat Simple_repeat 2 70 -4 2019 148 45 0 chr3 38574550 38574882 -179462276 + MER7A DNA MER2_type 2 346 0 226 155 28 0 chr3 38574882 38574888 -179462270 + (TA)n Simple_repeat Simple_repeat 70 74 0 225 0 0 0 chr3 38574912 38574937 -179462221 + (TG)n Simple_repeat Simple_repeat 2 26 0 276 268 14 0 chr3 38576200 38576271 -179460887 + Charlie8 DNA MER1_type 2341 2412 -5 204 304 29 0 chr3 38576319 38576388 -179460770 - MIR SINE MIR -106 156 86 33 43 0 0 chr3 38578523 38578570 -179458588 + AT_rich Low_complexity Low_complexity 1 47 0 10562 174 30 11 chr3 38578578 38579581 -179457577 - L1M2 LINE L1 -549 5742 4760 213 65 0 0 chr3 38579581 38579612 -179457546 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 10562 174 30 11 chr3 38579612 38581240 -179455918 - L1M2 LINE L1 -1531 4760 3057 232 305 188 8 chr3 38581661 38581789 -179455369 + L2 LINE L2 3117 3267 -5 22 0 0 0 chr3 38581805 38581827 -179455331 + AT_rich Low_complexity Low_complexity 1 22 0 6728 68 17 0 chr3 38582275 38583192 -179453966 - L1PA7 LINE L1 0 6154 5226 228 337 105 0 chr3 38583207 38583293 -179453865 - MER91C DNA MER1_type -45 95 1 396 344 160 5 chr3 38583415 38583627 -179453531 - MIR SINE MIR 0 262 18 186 294 98 33 chr3 38583907 38583999 -179453159 + L2 LINE L2 3174 3271 -1 1197 155 33 69 chr3 38584578 38584823 -179452335 - MER46A DNA MER2_type 0 236 1 2027 132 7 3 chr3 38585083 38585386 -179451772 + AluSg SINE Alu 1 304 -6 231 271 0 17 chr3 38588080 38588139 -179449019 + L2 LINE L2 3188 3245 -27 316 139 0 28 chr3 38588694 38588766 -179448392 + (TA)n Simple_repeat Simple_repeat 2 71 0 230 183 0 17 chr3 38588774 38588834 -179448324 - L1MCa LINE L1 -4362 2064 2006 190 137 0 39 chr3 38588842 38588893 -179448265 + (TA)n Simple_repeat Simple_repeat 2 50 0 521 295 128 13 chr3 38588916 38589150 -179448008 - MIR SINE MIR 0 262 2 192 411 6 25 chr3 38589203 38589366 -179447792 - L2 LINE L2 -209 3063 2904 232 374 64 28 chr3 38590056 38590414 -179446744 - L2 LINE L2 -692 2622 2252 574 176 50 0 chr3 38590516 38590635 -179446523 - AluJb SINE Alu 0 312 188 617 193 0 0 chr3 38590675 38590784 -179446374 - FLAM_C SINE Alu -34 109 1 1669 183 7 7 chr3 38590997 38591298 -179445860 + AluJb SINE Alu 1 301 -11 333 0 0 0 chr3 38591338 38591375 -179445783 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 86 0 3 chr3 38591386 38591689 -179445469 - AluY SINE Alu -9 302 1 212 294 0 44 chr3 38592171 38592239 -179444919 - L2 LINE L2 0 3272 3208 239 253 132 0 chr3 38593185 38593276 -179443882 + L1ME LINE L1 5547 5649 -472 796 134 37 43 chr3 38593965 38594152 -179443006 - MER53 DNA DNA -2 187 2 1219 197 58 7 chr3 38594202 38594497 -179442661 + MER33 DNA MER1_type 15 324 0 527 203 98 130 chr3 38594985 38595301 -179441857 + L2 LINE L2 2946 3251 -62 234 317 48 10 chr3 38595488 38595592 -179441566 - L2 LINE L2 -22 3291 3184 717 283 85 0 chr3 38595712 38595935 -179441223 - MIR SINE MIR -16 246 5 684 283 102 76 chr3 38596113 38596257 -179440901 - LTR33A LTR ERVL -6 517 378 2163 116 0 3 chr3 38596257 38596560 -179440598 - AluSx SINE Alu -10 302 1 684 283 102 76 chr3 38596560 38596878 -179440280 - LTR33A LTR ERVL -145 378 43 739 280 62 4 chr3 38597042 38597267 -179439891 - MIR SINE MIR -23 239 2 227 209 58 81 chr3 38597281 38597367 -179439791 + L2 LINE L2 3184 3267 -5 1616 189 0 26 chr3 38597791 38598104 -179439054 - AluJo SINE Alu -7 305 1 2091 119 0 49 chr3 38598482 38598810 -179438348 - AluSx SINE Alu 0 312 1 1300 197 33 33 chr3 38598838 38599137 -179438021 + AluJo SINE Alu 1 299 -13 21 36 0 0 chr3 38599333 38599361 -179437797 + AT_rich Low_complexity Low_complexity 1 28 0 386 260 175 19 chr3 38600149 38600303 -179436855 + MER5A DNA MER1_type 9 186 -3 2713 35 0 3 chr3 38600305 38600617 -179436541 + AluY SINE Alu 1 311 0 307 246 169 8 chr3 38600753 38600883 -179436275 - L3 LINE CR1 -214 1363 1213 223 259 12 25 chr3 38600887 38600968 -179436190 + CT-rich Low_complexity Low_complexity 2 81 0 261 0 0 0 chr3 38601248 38601277 -179435881 + (A)n Simple_repeat Simple_repeat 1 29 0 1135 36 0 0 chr3 38601793 38601930 -179435228 - L1PA5 LINE L1 -83 6071 5935 470 48 0 0 chr3 38601931 38601994 -179435164 + L1PA6 LINE L1 6090 6152 -2 23 0 0 0 chr3 38601994 38602017 -179435141 + AT_rich Low_complexity Low_complexity 1 23 0 2214 125 0 0 chr3 38602175 38602479 -179434679 - AluSx SINE Alu -8 304 1 2067 114 0 34 chr3 38602808 38603105 -179434053 - AluSq SINE Alu -21 292 6 21 36 0 0 chr3 38603657 38603685 -179433473 + AT_rich Low_complexity Low_complexity 1 28 0 181 291 81 12 chr3 38603707 38603793 -179433365 + L3b LINE CR1 1300 1391 -192 2156 98 0 39 chr3 38604647 38604953 -179432205 + AluSg SINE Alu 2 295 -15 509 254 188 0 chr3 38605257 38605395 -179431763 + MER5A DNA MER1_type 20 183 -6 198 184 0 82 chr3 38606101 38606150 -179431008 + L2 LINE L2 3216 3260 -12 354 45 0 0 chr3 38606304 38606348 -179430810 + (TA)n Simple_repeat Simple_repeat 2 45 0 1030 180 23 46 chr3 38606584 38606801 -179430357 + AluJo SINE Alu 77 288 -24 1726 186 0 14 chr3 38607262 38607558 -179429600 + AluJo SINE Alu 1 292 -20 1919 138 0 7 chr3 38607561 38607863 -179429295 + AluSg SINE Alu 1 300 0 279 0 0 0 chr3 38609777 38609808 -179427350 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr3 38611171 38611193 -179425965 + AT_rich Low_complexity Low_complexity 1 22 0 2302 87 3 0 chr3 38611609 38611919 -179425239 + AluY SINE Alu 1 311 0 241 246 104 60 chr3 38612867 38613001 -179424157 + MIR SINE MIR 75 214 -48 250 365 70 40 chr3 38613925 38614125 -179423033 - L3b LINE CR1 -84 1499 1294 24 32 0 0 chr3 38614370 38614401 -179422757 + AT_rich Low_complexity Low_complexity 1 31 0 437 352 33 5 chr3 38614585 38614798 -179422360 - MIR SINE MIR -5 257 39 1446 303 83 37 chr3 38615230 38616244 -179420914 + L2 LINE L2 2200 3308 -5 2112 117 3 3 chr3 38616428 38616727 -179420431 - AluSx SINE Alu -13 299 1 2021 139 0 3 chr3 38617493 38617796 -179419362 + AluSx SINE Alu 1 302 -10 455 216 34 0 chr3 38618857 38618945 -179418213 - MER58A DNA MER1_type -15 92 2 604 343 29 27 chr3 38618954 38619330 -179417828 + L1MC4a LINE L1 5533 5909 -1899 405 0 0 0 chr3 38620175 38620220 -179416938 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 38620244 38620265 -179416893 + AT_rich Low_complexity Low_complexity 1 21 0 550 230 25 50 chr3 38620271 38620432 -179416726 - MIR SINE MIR -66 196 40 1406 197 47 0 chr3 38621054 38621308 -179415850 - AluJo SINE Alu -23 289 24 22 0 0 0 chr3 38621626 38621648 -179415510 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 38621730 38621758 -179415400 + AT_rich Low_complexity Low_complexity 1 28 0 1692 127 70 14 chr3 38621874 38622158 -179415000 - AluSx SINE Alu -6 306 7 1331 195 32 22 chr3 38622219 38622496 -179414662 + AluJo SINE Alu 3 282 -30 194 0 39 0 chr3 38622500 38622526 -179414632 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 26 82 0 0 chr3 38622558 38622619 -179414539 + AT_rich Low_complexity Low_complexity 1 61 0 207 0 0 0 chr3 38623126 38623149 -179414009 + (T)n Simple_repeat Simple_repeat 1 23 0 2185 122 0 0 chr3 38623464 38623759 -179413399 - AluSx SINE Alu -10 302 8 759 113 50 35 chr3 38624380 38624521 -179412637 - MER53 DNA DNA 0 189 47 258 214 43 51 chr3 38624576 38624693 -179412465 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 469 207 33 0 chr3 38624710 38624831 -179412327 - MER53 DNA DNA -57 132 8 494 223 61 14 chr3 38624860 38625008 -179412150 - MLT1J2 LTR MaLR -229 221 67 462 270 50 25 chr3 38627001 38627160 -179409998 + MIR SINE MIR 52 214 -48 811 256 83 45 chr3 38627316 38627629 -179409529 - LTR16A LTR ERVL -6 444 120 264 313 47 0 chr3 38628249 38628399 -179408759 - L1ME LINE L1 -240 5881 5725 205 340 20 65 chr3 38628628 38628781 -179408377 - L2 LINE L2 -184 3088 2943 245 174 0 0 chr3 38629202 38629248 -179407910 - L2 LINE L2 0 3313 3268 2490 66 0 0 chr3 38630388 38630690 -179406468 + AluY SINE Alu 1 302 -9 466 346 47 45 chr3 38630799 38631201 -179405957 + LTR16C LTR ERVL 74 476 -15 288 286 100 0 chr3 38632642 38632712 -179404446 - L2 LINE L2 -1 3312 3236 282 288 159 0 chr3 38632794 38632926 -179404232 + MER5A DNA MER1_type 35 187 -2 * 623 218 32 0 chr3 38632818 38632942 -179404216 - MER5A DNA MER1_type -61 128 1 232 237 178 15 chr3 38633164 38633299 -179403859 + L1ME4a LINE L1 5965 6121 0 1167 92 0 0 chr3 38633455 38633607 -179403551 + AluSg/x SINE Alu 159 310 0 242 71 0 24 chr3 38633798 38633840 -179403318 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 38634317 38634338 -179402820 + AT_rich Low_complexity Low_complexity 1 21 0 5525 106 30 35 chr3 38634806 38635491 -179401667 - L1PA13 LINE L1 -3 6160 5474 369 43 0 0 chr3 38635491 38635538 -179401620 + (TTG)n Simple_repeat Simple_repeat 1 47 0 2228 97 0 0 chr3 38635538 38635817 -179401341 - AluSg SINE Alu -31 279 1 5525 106 30 35 chr3 38635817 38636058 -179401100 - L1PA13 LINE L1 -687 5476 5237 577 314 56 53 chr3 38636252 38636555 -179400603 - MER102b DNA MER1_type -31 310 7 204 260 0 0 chr3 38637459 38637509 -179399649 - L2 LINE L2 -1 3312 3263 223 293 0 0 chr3 38637662 38637720 -179399438 - L2 LINE L2 -4 3309 3252 1408 214 69 0 chr3 38637811 38638147 -179399011 + AluJo SINE Alu 3 358 0 2020 117 10 36 chr3 38638261 38638570 -179398588 + AluSq SINE Alu 1 301 -12 181 282 154 9 chr3 38638576 38638686 -179398472 + MIR SINE MIR 110 235 -27 25 31 0 0 chr3 38639999 38640031 -179397127 + AT_rich Low_complexity Low_complexity 1 32 0 247 340 39 31 chr3 38640136 38640431 -179396727 - L2 LINE L2 0 3313 2932 180 0 0 0 chr3 38640701 38640721 -179396437 + (A)n Simple_repeat Simple_repeat 1 20 0 720 260 92 24 chr3 38640728 38640978 -179396180 + L1ME1 LINE L1 5891 6157 -9 216 341 65 7 chr3 38642415 38642553 -179394605 + L3 LINE CR1 1232 1377 -200 308 349 125 31 chr3 38642582 38642774 -179394384 - MIR SINE MIR -39 223 14 363 367 25 13 chr3 38642805 38642963 -179394195 + L3 LINE CR1 1411 1570 -7 463 298 155 0 chr3 38643008 38643169 -179393989 - MER5A DNA MER1_type 0 189 4 22 0 0 0 chr3 38644116 38644138 -179393020 + AT_rich Low_complexity Low_complexity 1 22 0 19982 167 39 9 chr3 38644251 38647184 -179389974 - L1MA2 LINE L1 0 7723 4877 2027 141 13 0 chr3 38647184 38647483 -179389675 - AluSx SINE Alu -9 303 1 19982 167 39 9 chr3 38647483 38648895 -179388263 - L1MA2 LINE L1 -2846 4877 3508 315 0 0 0 chr3 38648895 38648930 -179388228 + (CA)n Simple_repeat Simple_repeat 2 36 0 19982 167 39 9 chr3 38648930 38652063 -179385095 - L1MA2 LINE L1 -4215 3508 23 2880 10 0 0 chr3 38652854 38653167 -179383991 - AluYb8 SINE Alu -5 313 1 275 0 29 0 chr3 38654742 38654777 -179382381 + (TAA)n Simple_repeat Simple_repeat 1 36 0 423 0 0 0 chr3 38656216 38656263 -179380895 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 250 291 23 35 chr3 38657551 38657637 -179379521 - L2 LINE L2 -1 3271 3187 282 298 64 64 chr3 38657651 38657839 -179379319 + L2 LINE L2 1485 1672 -1642 223 298 0 0 chr3 38657847 38657904 -179379254 + L2 LINE L2 3251 3307 -6 182 279 0 0 chr3 38657918 38657961 -179379197 - MER5B DNA MER1_type 0 178 136 1302 284 107 63 chr3 38657995 38659014 -179378144 + L2 LINE L2 1686 2749 -565 277 338 147 0 chr3 38659098 38659234 -179377924 + L2 LINE L2 3117 3272 0 296 252 18 45 chr3 38659519 38659630 -179377528 + MIR SINE MIR 53 160 -102 306 250 0 0 chr3 38660680 38660744 -179376414 - L2 LINE L2 0 3313 3250 189 0 0 0 chr3 38661294 38661315 -179375843 + (T)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr3 38661315 38661345 -179375813 + (TG)n Simple_repeat Simple_repeat 1 30 0 489 250 149 0 chr3 38661992 38662206 -179374952 + L1MD3 LINE L1 6069 7984 -11 274 246 0 0 chr3 38663269 38663334 -179373824 + CT-rich Low_complexity Low_complexity 2 66 0 662 283 126 9 chr3 38664214 38664444 -179372714 + MIR SINE MIR 3 259 -3 21 36 0 0 chr3 38664527 38664555 -179372603 + AT_rich Low_complexity Low_complexity 1 28 0 209 325 26 0 chr3 38664561 38664638 -179372520 - L2 LINE L2 -6 3307 3229 333 320 20 85 chr3 38664915 38665162 -179371996 - MLT1J LTR MaLR -173 338 108 222 37 0 0 chr3 38666254 38666281 -179370877 + (CA)n Simple_repeat Simple_repeat 2 28 0 7025 41 0 9 chr3 38666367 38667238 -179369920 + L1PA5 LINE L1 5286 6148 -6 611 287 69 84 chr3 38667805 38668139 -179369019 - L2 LINE L2 -11 3302 2974 2260 103 0 6 chr3 38669183 38669495 -179367663 + AluSg SINE Alu 1 310 0 411 236 194 18 chr3 38670556 38670721 -179366437 - MIR SINE MIR -49 213 20 215 246 15 31 chr3 38670836 38670901 -179366257 + L2 LINE L2 3250 3313 0 1402 123 22 9 chr3 38673242 38673469 -179363689 + L1MA1 LINE L1 6073 6302 0 1768 212 92 10 chr3 38674278 38674670 -179362488 + MSTB1 LTR MaLR 9 432 0 200 200 46 0 chr3 38675200 38675265 -179361893 + (TA)n Simple_repeat Simple_repeat 2 69 0 311 306 86 92 chr3 38676920 38677256 -179359902 + L2 LINE L2 2975 3308 -5 258 349 121 0 chr3 38677255 38677387 -179359771 - MIR SINE MIR -86 176 29 * 499 218 18 18 chr3 38677503 38677613 -179359545 + MER20 DNA MER1_type 1 110 -109 188 396 44 11 chr3 38677761 38677852 -179359306 - L2 LINE L2 -78 3194 3101 767 202 11 71 chr3 38678011 38678194 -179358964 + MER20 DNA MER1_type 47 218 -1 22 0 0 0 chr3 38681036 38681058 -179356100 + AT_rich Low_complexity Low_complexity 1 22 0 1923 189 17 3 chr3 38681305 38681665 -179355493 - MLT1A1 LTR MaLR 0 365 1 308 168 46 130 chr3 38682029 38682160 -179354998 - L1MC5 LINE L1 -60 7901 7782 31 26 0 0 chr3 38682169 38682207 -179354951 + AT_rich Low_complexity Low_complexity 1 38 0 227 250 0 0 chr3 38682217 38682281 -179354877 - L1MC5 LINE L1 -197 7764 7701 702 187 249 13 chr3 38683073 38683298 -179353860 - MER5C DNA MER1_type -3 321 44 277 301 0 0 chr3 38683708 38683781 -179353377 + L2 LINE L2 3238 3310 -3 543 287 116 6 chr3 38686003 38686167 -179350991 + MIR SINE MIR 3 184 -78 340 343 102 6 chr3 38686334 38686678 -179350480 - L1ME4a LINE L1 -212 5909 5533 346 276 49 0 chr3 38687090 38687192 -179349966 + MER45 DNA AcHobo 1 117 -61 1593 121 25 0 chr3 38687199 38687439 -179349719 - L1M2 LINE L1 -577 5714 5469 240 197 76 30 chr3 38687454 38687520 -179349638 + MER45 DNA AcHobo 1513 1581 0 5714 133 40 6 chr3 38687677 38688624 -179348534 + L1MA8 LINE L1 5259 6237 -54 23 0 0 0 chr3 38688624 38688647 -179348511 + AT_rich Low_complexity Low_complexity 1 23 0 294 311 59 25 chr3 38689062 38689181 -179347977 - MIR3 SINE MIR -37 171 49 236 296 154 47 chr3 38689365 38689534 -179347624 + MIR SINE MIR 34 220 -42 234 0 0 0 chr3 38689537 38689563 -179347595 + (CA)n Simple_repeat Simple_repeat 1 26 0 412 256 0 0 chr3 38689685 38689763 -179347395 + FLAM_C SINE Alu 26 103 -40 421 271 34 62 chr3 38690215 38690273 -179346885 - L1ME1 LINE L1 -5 6161 6103 2166 71 7 3 chr3 38690273 38690578 -179346580 + AluSq SINE Alu 3 308 0 421 271 34 62 chr3 38690578 38690695 -179346463 - L1ME1 LINE L1 -63 6103 5990 663 215 48 16 chr3 38691415 38691601 -179345557 + L1ME3 LINE L1 5880 6071 -91 266 224 104 0 chr3 38691779 38691846 -179345312 + MIR3 SINE MIR 123 196 -12 306 278 130 17 chr3 38691868 38691983 -179345175 - L2 LINE L2 0 3313 3186 1951 127 3 38 chr3 38692279 38692595 -179344563 + AluSq SINE Alu 1 305 -8 1147 84 19 35 chr3 38693160 38693351 -179343807 + L1PA8A LINE L1 5938 6154 -1 184 313 16 0 chr3 38693642 38693706 -179343452 + MIR SINE MIR 86 150 -112 21 0 0 0 chr3 38694220 38694241 -179342917 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 38694623 38694658 -179342500 + AT_rich Low_complexity Low_complexity 1 35 0 236 318 94 0 chr3 38696082 38696167 -179340991 + MIR3 SINE MIR 104 196 -12 379 267 92 51 chr3 38696191 38696386 -179340772 - L2 LINE L2 0 3313 3111 667 227 41 72 chr3 38696759 38696906 -179340252 + MIR SINE MIR 9 150 -112 1972 75 50 4 chr3 38696906 38697184 -179339974 + AluY SINE Alu 4 294 -17 667 227 41 72 chr3 38697184 38697230 -179339928 + MIR SINE MIR 150 196 -66 2386 54 7 7 chr3 38697377 38697675 -179339483 + AluY SINE Alu 1 298 -13 1380 169 93 35 chr3 38698955 38699299 -179337859 + THE1B LTR MaLR 1 364 0 1870 134 0 14 chr3 38699479 38699762 -179337396 + AluSq SINE Alu 2 280 -33 366 23 0 0 chr3 38699764 38699807 -179337351 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 254 226 98 59 chr3 38700240 38700342 -179336816 + MIR SINE MIR 62 167 -95 358 277 94 96 chr3 38700814 38701005 -179336153 + MIR SINE MIR 10 220 -42 321 242 44 11 chr3 38701075 38701166 -179335992 + MIR SINE MIR 99 192 -70 205 345 57 68 chr3 38701325 38701403 -179335755 + L2 LINE L2 2915 2992 -280 778 155 170 46 chr3 38701403 38701597 -179335561 - MER20 DNA MER1_type 0 219 2 205 345 57 68 chr3 38701597 38701814 -179335344 + L2 LINE L2 2992 3207 -65 233 280 0 0 chr3 38701842 38701892 -179335266 + polypurine Low_complexity Low_complexity 1 50 0 975 243 93 29 chr3 38702730 38703105 -179334053 - HsTC2 DNA Tc2 -39 1859 1285 440 223 149 8 chr3 38703109 38703230 -179333928 - HsTC2 DNA Tc2 -1757 141 4 379 298 32 32 chr3 38703294 38703418 -179333740 + MIR SINE MIR 17 140 -122 255 200 33 33 chr3 38704515 38704575 -179332583 + L2 LINE L2 3206 3265 -7 377 331 27 27 chr3 38704700 38704848 -179332310 + MER5A DNA MER1_type 42 189 0 181 298 35 18 chr3 38707866 38707923 -179329235 - MIR SINE MIR -135 73 16 1160 237 113 4 chr3 38708553 38708827 -179328331 + LTR16C LTR ERVL 188 491 0 1957 273 43 20 chr3 38709166 38709770 -179327388 + L2 LINE L2 2164 2781 -533 315 0 0 0 chr3 38710105 38710140 -179327018 + (TG)n Simple_repeat Simple_repeat 2 36 0 280 359 0 47 chr3 38713357 38713485 -179323673 + MER5A DNA MER1_type 40 161 -28 285 51 0 0 chr3 38713652 38713691 -179323467 + (GA)n Simple_repeat Simple_repeat 2 40 0 345 24 0 0 chr3 38714322 38714364 -179322794 + (CA)n Simple_repeat Simple_repeat 2 43 0 779 253 16 5 chr3 38714867 38715061 -179322097 + MIR SINE MIR 32 227 -35 658 269 118 38 chr3 38715096 38715621 -179321537 - L1ME4a LINE L1 -28 6093 5527 243 214 24 24 chr3 38716461 38716545 -179320613 + MER113 DNA MER1_type? 127 210 -311 655 262 29 24 chr3 38720130 38720336 -179316822 - MER3 DNA MER1_type 0 209 3 2275 105 0 3 chr3 38721039 38721345 -179315813 - AluSx SINE Alu -7 305 1 207 0 0 0 chr3 38721472 38721495 -179315663 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr3 38722247 38722287 -179314871 + AT_rich Low_complexity Low_complexity 1 40 0 1969 146 0 16 chr3 38722330 38722639 -179314519 - AluJb SINE Alu -8 304 1 1732 181 0 28 chr3 38724338 38724659 -179312499 - AluJb SINE Alu 0 312 1 24 67 0 0 chr3 38725919 38725964 -179311194 + AT_rich Low_complexity Low_complexity 1 45 0 364 290 48 0 chr3 38727252 38727376 -179309782 + MIR SINE MIR 57 186 -76 186 43 0 0 chr3 38727754 38727777 -179309381 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 263 291 0 23 chr3 38728486 38728572 -179308586 - Charlie8 DNA MER1_type -2195 222 139 468 0 0 0 chr3 38728588 38728640 -179308518 + (TG)n Simple_repeat Simple_repeat 2 53 0 1665 185 10 27 chr3 38728666 38728964 -179308194 - AluSx SINE Alu -19 293 1 229 177 40 153 chr3 38729127 38729251 -179307907 + MIR SINE MIR 103 212 -50 5959 162 66 8 chr3 38729471 38730632 -179306526 + Tigger3b DNA MER2_type 2 1230 -1 615 261 151 7 chr3 38730981 38731253 -179305905 - MLT1J1 LTR MaLR -133 313 3 2840 60 0 0 chr3 38731652 38732002 -179305156 - L1P2 LINE L1 -422 5732 5383 551 73 0 0 chr3 38731999 38732081 -179305077 + L1P LINE L1 4625 4706 -1440 * 220 261 146 39 chr3 38732133 38732263 -179304895 + MIR SINE MIR 118 261 -1 373 185 74 9 chr3 38732352 38732460 -179304698 - MER53 DNA DNA -52 137 23 1269 218 42 18 chr3 38734289 38734573 -179302585 + AluJo SINE Alu 1 291 -21 2221 129 3 0 chr3 38736459 38736768 -179300390 - AluSg SINE Alu 0 310 1 319 233 0 0 chr3 38736936 38737022 -179300136 + (TA)n Simple_repeat Simple_repeat 2 87 0 780 178 0 15 chr3 38737685 38737820 -179299338 + FLAM_C SINE Alu 1 133 0 25 31 0 0 chr3 38738088 38738120 -179299038 + AT_rich Low_complexity Low_complexity 1 32 0 1714 155 79 0 chr3 38738163 38738441 -179298717 + AluJo SINE Alu 1 300 -12 706 95 0 0 chr3 38739945 38740040 -179297118 - AluSg/x SINE Alu -12 300 206 1846 110 0 0 chr3 38740040 38740277 -179296881 - AluSq SINE Alu -76 237 1 24 0 0 0 chr3 38740807 38740831 -179296327 + AT_rich Low_complexity Low_complexity 1 24 0 350 306 76 25 chr3 38741489 38741646 -179295512 + MIR SINE MIR 49 213 -49 476 343 75 8 chr3 38742253 38742492 -179294666 + MIR SINE MIR 4 258 -4 564 264 132 0 chr3 38742545 38742712 -179294446 - MER5A DNA MER1_type 0 189 1 2106 90 17 13 chr3 38743032 38743363 -179293795 - AluSc SINE Alu 0 309 1 4087 181 18 9 chr3 38743453 38744241 -179292917 - L1MB3 LINE L1 -2 6417 5623 570 213 20 0 chr3 38744236 38744386 -179292772 - L1MB3 LINE L1 -1656 4726 4574 * 1148 195 102 8 chr3 38744379 38744840 -179292318 - L1MB3 LINE L1 -3579 2803 2302 * 3526 199 31 20 chr3 38744836 38745548 -179291610 - L1MB3 LINE L1 -5646 738 19 180 362 81 27 chr3 38746609 38746794 -179290364 - MIR SINE MIR -5 257 63 23 54 0 0 chr3 38747084 38747121 -179290037 + AT_rich Low_complexity Low_complexity 1 37 0 206 118 0 0 chr3 38747299 38747333 -179289825 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr3 38747997 38748020 -179289138 + AT_rich Low_complexity Low_complexity 1 23 0 331 302 35 17 chr3 38748056 38748172 -179288986 + L2 LINE L2 3196 3313 0 2129 118 0 0 chr3 38748454 38748741 -179288417 + AluSc SINE Alu 1 287 -22 1016 295 113 27 chr3 38750162 38750688 -179286470 + L2 LINE L2 2740 3313 0 26 0 0 0 chr3 38751000 38751026 -179286132 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr3 38751275 38751313 -179285845 + AT_rich Low_complexity Low_complexity 1 38 0 796 238 32 11 chr3 38751582 38751767 -179285391 + MER5A DNA MER1_type 1 189 0 474 275 87 5 chr3 38752342 38752549 -179284609 - LTR33A LTR ERVL 0 523 300 284 318 116 0 chr3 38752792 38752921 -179284237 - LTR50 LTR ERVL -629 166 23 881 271 149 15 chr3 38753187 38753582 -179283576 + LTR16A1 LTR ERVL 8 455 -2 246 216 0 95 chr3 38753634 38753708 -179283450 - MIR SINE MIR -117 145 79 543 151 85 0 chr3 38754411 38754517 -179282641 + MLT1C LTR MaLR 1 115 -352 38591 80 10 11 chr3 38754536 38760679 -179276479 + L1PA5 LINE L1 11 6148 -6 393 279 83 49 chr3 38760688 38761096 -179276062 - HAL1b LINE L1 -480 868 447 2521 128 59 2 chr3 38761113 38761518 -179275640 - MSTA LTR MaLR 0 428 1 394 274 34 34 chr3 38762082 38762199 -179274959 + MIR SINE MIR 16 132 -76 384 339 63 42 chr3 38762550 38762789 -179274369 + L3b LINE CR1 1105 1348 -235 782 233 12 12 chr3 38763288 38763460 -179273698 + MER5A DNA MER1_type 18 189 0 182 37 37 0 chr3 38764016 38764043 -179273115 + (TA)n Simple_repeat Simple_repeat 1 28 0 434 258 17 8 chr3 38765105 38765225 -179271933 - L1ME2 LINE L1 -19 6145 6025 5220 97 4 5 chr3 38765583 38766324 -179270834 - L1PA11 LINE L1 0 6174 5435 1795 125 3 35 chr3 38766391 38766701 -179270457 - AluSc SINE Alu 0 301 1 322 226 113 61 chr3 38766722 38766837 -179270321 + MER117 DNA MER1_type 36 156 -41 186 71 0 0 chr3 38767834 38767862 -179269296 + (CA)n Simple_repeat Simple_repeat 2 29 0 378 42 0 0 chr3 38769028 38769076 -179268082 + (CA)n Simple_repeat Simple_repeat 2 49 0 2303 53 0 11 chr3 38769291 38769609 -179267549 - AluY SINE Alu 0 315 1 25 0 0 0 chr3 38770394 38770419 -179266739 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 38770485 38770509 -179266649 + AT_rich Low_complexity Low_complexity 1 24 0 480 238 74 64 chr3 38771808 38772010 -179265148 + MIR SINE MIR 47 250 -12 673 243 7 7 chr3 38772395 38772539 -179264619 - LTR16C LTR ERVL -135 356 213 22 0 0 0 chr3 38772576 38772598 -179264560 + AT_rich Low_complexity Low_complexity 1 22 0 1957 176 8 3 chr3 38773186 38773545 -179263613 - MER46B DNA MER2_type 0 236 1 391 297 71 0 chr3 38774515 38774697 -179262461 - L1MC4a LINE L1 -1878 5930 5736 1813 156 17 3 chr3 38774792 38775080 -179262078 - AluSx SINE Alu -17 295 4 199 205 51 0 chr3 38775478 38775517 -179261641 - MER5A DNA MER1_type -70 119 79 211 390 8 8 chr3 38776562 38776680 -179260478 - L2 LINE L2 -467 2847 2730 1952 68 0 0 chr3 38776702 38776938 -179260220 + AluSq SINE Alu 72 307 -6 4412 116 127 103 chr3 38777040 38778564 -179258594 + pTR5 LTR ERV1 743 2438 0 242 363 94 33 chr3 38778679 38778891 -179258267 - MIR SINE MIR -37 225 1 3163 151 25 6 chr3 38779402 38779919 -179257239 + MER1A DNA MER1_type 1 527 0 532 194 194 0 chr3 38780142 38780286 -179256872 + MIR SINE MIR 91 262 0 1198 262 87 18 chr3 38784446 38784847 -179252311 + LTR16A LTR ERVL 21 449 -1 427 313 103 9 chr3 38785971 38786204 -179250954 - MIR SINE MIR 0 262 8 360 264 36 55 chr3 38786559 38786630 -179250528 - L2 LINE L2 0 3313 3243 1608 134 131 3 chr3 38786630 38786928 -179250230 - MER44D DNA MER2_type 0 609 4 360 264 36 55 chr3 38786928 38786966 -179250192 - L2 LINE L2 -70 3243 3206 448 285 44 32 chr3 38787152 38787310 -179249848 - MIR3 SINE MIR -5 203 44 2297 190 20 93 chr3 38787809 38787941 -179249217 + MLT2B2 LTR ERVL 1 141 -374 1817 192 0 0 chr3 38787941 38788248 -179248910 - AluJb SINE Alu -4 308 2 2297 190 20 93 chr3 38788248 38788662 -179248496 + MLT2B2 LTR ERVL 141 507 -8 26 0 0 0 chr3 38788744 38788770 -179248388 + AT_rich Low_complexity Low_complexity 1 26 0 2020 165 0 0 chr3 38789409 38789718 -179247440 + AluJb SINE Alu 1 309 -3 448 205 0 0 chr3 38789730 38789813 -179247345 - L2 LINE L2 -9 3304 3222 * 760 266 142 63 chr3 38789784 38790227 -179246931 - L2 LINE L2 -687 2627 2150 303 93 0 0 chr3 38790375 38790418 -179246740 + (CA)n Simple_repeat Simple_repeat 1 43 0 220 315 148 13 chr3 38790862 38791011 -179246147 - MIR SINE MIR -20 242 74 424 304 99 16 chr3 38791692 38791883 -179245275 + L1MC/D LINE L1 5458 5664 -2144 361 286 32 7 chr3 38792030 38792184 -179244974 - L1ME4a LINE L1 -3 6118 5961 619 306 121 0 chr3 38792679 38792885 -179244273 + MIR SINE MIR 18 248 -14 847 298 94 22 chr3 38793971 38794333 -179242825 - LTR16C LTR ERVL -14 477 90 467 269 228 0 chr3 38794681 38794826 -179242332 - MER5A DNA MER1_type -3 186 9 206 229 200 29 chr3 38794922 38794992 -179242166 + MIR SINE MIR 30 111 -97 857 327 77 46 chr3 38795221 38795835 -179241323 + L2 LINE L2 2313 2945 -369 255 31 0 0 chr3 38796333 38796365 -179240793 + (TG)n Simple_repeat Simple_repeat 1 32 0 403 208 13 13 chr3 38797131 38797233 -179239925 - MER20 DNA MER1_type -115 104 3 2949 244 68 22 chr3 38797849 38798601 -179238557 - L1MC4 LINE L1 -6 8036 7225 2308 103 3 3 chr3 38798601 38798912 -179238246 - AluSq SINE Alu -2 311 1 2949 244 68 22 chr3 38798912 38799161 -179237997 - L1MC4 LINE L1 -817 7225 6989 361 307 52 0 chr3 38799986 38800139 -179237019 - MIR SINE MIR -3 259 99 207 316 62 57 chr3 38800449 38800642 -179236516 + L2 LINE L2 3120 3313 0 15161 96 13 6 chr3 38800955 38803882 -179233276 + L1PA8 LINE L1 3093 6031 -141 372 45 0 0 chr3 38804650 38804694 -179232464 - MLT2C1 LTR ERVL 0 397 354 351 243 0 28 chr3 38804777 38804954 -179232204 + CT-rich Low_complexity Low_complexity 2 173 0 1221 275 84 23 chr3 38804984 38805413 -179231745 - MLT2B1 LTR ERVL -65 455 1 26 0 0 0 chr3 38805621 38805647 -179231511 + AT_rich Low_complexity Low_complexity 1 26 0 1886 143 18 6 chr3 38806210 38806546 -179230612 - L1M2 LINE L1 -594 5706 5367 1541 163 54 33 chr3 38806558 38806889 -179230269 - L1M2 LINE L1 -901 5245 4908 210 37 0 0 chr3 38806905 38806932 -179230226 + (CA)n Simple_repeat Simple_repeat 2 28 0 2914 145 8 14 chr3 38806933 38807438 -179229720 + L1MA5 LINE L1 5795 6296 -4 783 193 114 90 chr3 38807542 38807832 -179229326 + MER5C DNA MER1_type 22 318 -6 337 268 49 41 chr3 38808685 38808808 -179228350 + MIR3 SINE MIR 55 178 -30 23 33 0 0 chr3 38808821 38808851 -179228307 + AT_rich Low_complexity Low_complexity 1 30 0 1129 224 84 41 chr3 38809604 38809876 -179227282 - MER113 DNA MER1_type? -88 433 135 2366 52 10 0 chr3 38809876 38810164 -179226994 - AluY SINE Alu -20 291 1 1129 224 84 41 chr3 38810164 38810306 -179226852 - MER113 DNA MER1_type? -386 135 1 272 285 50 69 chr3 38810311 38810493 -179226665 + MIR SINE MIR 17 188 -74 216 67 0 0 chr3 38810597 38810627 -179226531 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 215 194 0 0 chr3 38810684 38810720 -179226438 + (TGG)n Simple_repeat Simple_repeat 1 36 0 366 91 0 0 chr3 38810721 38810776 -179226382 + (TG)n Simple_repeat Simple_repeat 1 55 0 909 168 22 32 chr3 38811530 38811715 -179225443 - MER5A DNA MER1_type -6 183 1 571 301 169 0 chr3 38811728 38811941 -179225217 + MIR SINE MIR 2 250 -12 2571 52 0 10 chr3 38812061 38812371 -179224787 + AluY SINE Alu 1 307 -4 22 0 0 0 chr3 38812864 38812886 -179224272 + AT_rich Low_complexity Low_complexity 1 22 0 2215 109 0 3 chr3 38813649 38813952 -179223206 + AluSg SINE Alu 1 302 -8 2119 168 26 5 chr3 38814559 38814941 -179222217 - MLT1B LTR MaLR 0 390 1 210 365 75 0 chr3 38815172 38815279 -179221879 + L2 LINE L2 2650 2764 -550 484 239 179 0 chr3 38816180 38816314 -179220844 - MER105 DNA DNA -3 201 44 727 211 39 61 chr3 38816314 38816494 -179220664 + MER5A DNA MER1_type 3 178 -11 735 195 5 124 chr3 38816519 38816637 -179220521 - MER5A DNA MER1_type -26 163 53 2238 64 2 2 chr3 38816637 38816932 -179220226 - L1PA4 LINE L1 -3 6152 5858 735 195 5 124 chr3 38816932 38816980 -179220178 - MER5A DNA MER1_type -136 53 1 246 324 86 29 chr3 38817087 38817192 -179219966 + L2 LINE L2 3161 3271 -1 2174 110 0 7 chr3 38817391 38817691 -179219467 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr3 38819740 38819762 -179217396 + AT_rich Low_complexity Low_complexity 1 22 0 232 316 44 35 chr3 38820124 38820238 -179216920 + MIR SINE MIR 15 129 -133 189 0 0 0 chr3 38820241 38820262 -179216896 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 576 65 0 0 chr3 38820264 38820341 -179216817 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 939 140 14 0 chr3 38820473 38820616 -179216542 - MER61D LTR ERV1 0 501 357 273 105 0 0 chr3 38820665 38820703 -179216455 - MER61B LTR ERV1 -286 139 102 * 701 239 6 17 chr3 38820680 38820860 -179216298 - LTR28 LTR ERV1 -842 178 1 255 310 99 78 chr3 38820861 38821206 -179215952 - L2 LINE L2 -124 3189 2838 1999 172 40 12 chr3 38821209 38821633 -179215525 - LTR23 LTR ERV1 0 437 2 9864 169 46 38 chr3 38821634 38823438 -179213720 - LTR23-int LTR ERV1 -6 5699 4409 1524 86 5 0 chr3 38823438 38823648 -179213510 - L1PA13 LINE L1 -4 6159 5949 9864 169 46 38 chr3 38823648 38824478 -179212680 - LTR23-int LTR ERV1 -1296 4409 3587 1728 171 84 47 chr3 38824473 38824615 -179212543 - LTR23-int LTR ERV1 -3442 1681 1546 * 1972 202 124 63 chr3 38824615 38825392 -179211766 - LTR1B LTR ERV1 0 826 3 1728 171 84 47 chr3 38825392 38825700 -179211458 - LTR23-int LTR ERV1 -3577 1546 1214 639 286 103 13 chr3 38825700 38825934 -179211224 - MER34C LTR ERV1 -171 414 160 2060 228 45 51 chr3 38825936 38826565 -179210593 - LTR23-int LTR ERV1 -3695 2636 751 795 261 16 12 chr3 38826599 38826852 -179210306 - LTR23-int LTR ERV1 -4396 727 474 2059 117 17 0 chr3 38826852 38827142 -179210016 - AluSx SINE Alu -17 295 1 730 225 20 81 chr3 38827152 38827509 -179209649 - LTR23-int LTR ERV1 -4643 480 1 2177 122 77 21 chr3 38827509 38827920 -179209238 - LTR23 LTR ERV1 0 467 1 678 310 56 56 chr3 38828313 38828781 -179208377 - LTR33 LTR ERVL -8 513 46 2159 243 70 73 chr3 38829020 38829209 -179207949 - MER21B LTR ERV1 -62 801 613 2432 126 3 8 chr3 38829209 38829575 -179207583 - THE1B LTR MaLR 0 364 1 2159 243 70 73 chr3 38829575 38830189 -179206969 - MER21B LTR ERV1 -250 613 1 545 288 8 0 chr3 38830228 38830360 -179206798 - Charlie8 DNA MER1_type -2263 154 22 728 252 13 13 chr3 38830396 38830555 -179206603 + MER5B DNA MER1_type 1 159 -19 1882 214 70 13 chr3 38830558 38831015 -179206143 - L1MD3 LINE L1 -1 7994 7512 296 306 74 9 chr3 38831195 38831303 -179205855 + MIR SINE MIR 38 152 -56 342 80 0 0 chr3 38833142 38833192 -179203966 + (CA)n Simple_repeat Simple_repeat 2 51 0 605 292 41 0 chr3 38833927 38834098 -179203060 - MER45A DNA AcHobo 0 178 1 282 309 103 29 chr3 38834590 38834765 -179202393 - Tigger8 DNA MER2_type -19 647 460 339 340 104 19 chr3 38834791 38835059 -179202099 - Tigger8 DNA MER2_type -313 353 63 300 266 149 32 chr3 38835310 38835464 -179201694 + MIR SINE MIR 2 173 -89 228 246 70 0 chr3 38835469 38835526 -179201632 - L2 LINE L2 0 3272 3212 524 261 8 0 chr3 38836217 38836347 -179200811 + MER5C DNA MER1_type 1 131 -193 300 238 60 0 chr3 38836363 38836447 -179200711 + MER5C DNA MER1_type 232 320 -4 186 297 22 77 chr3 38836420 38836511 -179200647 + L2 LINE L2 124 209 -3105 * 30 0 0 0 chr3 38837423 38837453 -179199705 + AT_rich Low_complexity Low_complexity 1 30 0 2136 127 73 15 chr3 38838632 38838972 -179198186 - THE1B LTR MaLR 0 364 5 312 263 51 34 chr3 38841677 38841795 -179195363 + LTR16C LTR ERVL 319 438 -53 29 28 0 0 chr3 38842755 38842791 -179194367 + AT_rich Low_complexity Low_complexity 1 36 0 221 331 90 60 chr3 38844197 38844330 -179192828 + L2 LINE L2 3134 3270 -2 1216 234 62 83 chr3 38844343 38844509 -179192649 + MLT1D LTR MaLR 1 169 -336 1983 149 136 5 chr3 38844509 38844884 -179192274 - MSTA LTR MaLR 0 428 5 1216 234 62 83 chr3 38844884 38845233 -179191925 + MLT1D LTR MaLR 169 505 0 1376 179 110 11 chr3 38845350 38845663 -179191495 - MER31A LTR ERV1 0 485 8 22 0 0 0 chr3 38846240 38846262 -179190896 + AT_rich Low_complexity Low_complexity 1 22 0 845 333 35 15 chr3 38846532 38846937 -179190221 + LTR16C LTR ERVL 76 488 -3 1909 200 94 2 chr3 38847462 38847917 -179189241 + Charlie1b DNA MER1_type 11 507 -16 237 98 0 0 chr3 38848126 38848167 -179188991 + (T)n Simple_repeat Simple_repeat 1 41 0 300 91 0 0 chr3 38848756 38848800 -179188358 + (TG)n Simple_repeat Simple_repeat 1 44 0 183 42 0 0 chr3 38848799 38848823 -179188335 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 22 35 0 0 chr3 38849309 38849338 -179187820 + AT_rich Low_complexity Low_complexity 1 29 0 648 0 0 0 chr3 38849697 38849769 -179187389 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 470 145 0 0 chr3 38849771 38849840 -179187318 - AluS SINE Alu -19 293 225 24 32 0 0 chr3 38850024 38850055 -179187103 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr3 38850277 38850321 -179186837 + AT_rich Low_complexity Low_complexity 1 44 0 202 309 62 10 chr3 38850548 38850645 -179186513 + MIR SINE MIR 31 132 -130 476 33 0 0 chr3 38850655 38850715 -179186443 - L1PA4 LINE L1 -87 6068 6009 619 85 0 0 chr3 38850715 38850795 -179186363 + L1PA5 LINE L1 6068 6149 -5 2577 57 3 12 chr3 38851964 38852300 -179184858 - L1PB2 LINE L1 -62 6089 5757 215 211 0 0 chr3 38852395 38852433 -179184725 - MIR SINE MIR -224 38 1 422 19 0 0 chr3 38853059 38853111 -179184047 - L1PA3 LINE L1 -4 6151 6100 10910 30 0 0 chr3 38853111 38854413 -179182745 + L1P LINE L1 3396 4697 -1449 2058 118 0 53 chr3 38854542 38854864 -179182294 - AluSx SINE Alu -7 305 1 22 0 0 0 chr3 38855770 38855792 -179181366 + AT_rich Low_complexity Low_complexity 1 22 0 1046 237 5 9 chr3 38856588 38856812 -179180346 - MER58A DNA MER1_type 0 224 2 21 0 0 0 chr3 38856833 38856854 -179180304 + AT_rich Low_complexity Low_complexity 1 21 0 2009 147 20 0 chr3 38857272 38857602 -179179556 + AluSx SINE Alu 1 336 0 321 338 8 0 chr3 38858060 38858193 -179178965 + L1ME LINE L1 5640 5773 -348 28 0 0 0 chr3 38858279 38858307 -179178851 + AT_rich Low_complexity Low_complexity 1 28 0 470 250 35 9 chr3 38859715 38859831 -179177327 + L2 LINE L2 3192 3310 -3 227 245 47 38 chr3 38863540 38863646 -179173512 - L1MC/D LINE L1 -1914 5894 5788 5409 155 41 1 chr3 38863884 38864834 -179172324 - Tigger3b DNA MER2_type -242 989 2 351 65 0 0 chr3 38864961 38865007 -179172151 + (CA)n Simple_repeat Simple_repeat 1 46 0 214 261 101 0 chr3 38865846 38865915 -179171243 + MIR3 SINE MIR 94 169 -39 197 282 26 0 chr3 38866690 38866729 -179170429 - MIR SINE MIR -133 75 36 235 327 50 0 chr3 38866763 38866864 -179170294 + MIR SINE MIR 87 192 -70 27 0 0 0 chr3 38867419 38867446 -179169712 + AT_rich Low_complexity Low_complexity 1 27 0 458 19 0 0 chr3 38867585 38867637 -179169521 + (A)n Simple_repeat Simple_repeat 1 52 0 500 173 8 90 chr3 38868191 38868324 -179168834 + FLAM_A SINE Alu 2 123 -10 1643 227 80 107 chr3 38870493 38870925 -179166233 - L1ME3A LINE L1 -9 6161 5756 771 246 55 10 chr3 38870925 38871124 -179166034 + MER3 DNA MER1_type 2 209 0 1643 227 80 107 chr3 38871124 38871411 -179165747 - L1ME3A LINE L1 -414 5756 5463 1720 169 35 56 chr3 38871478 38871851 -179165307 + MLT1A1 LTR MaLR 1 365 0 2115 111 14 3 chr3 38872433 38872730 -179164428 - AluSq SINE Alu -12 301 2 2675 90 3 6 chr3 38872775 38873140 -179164018 + THE1B LTR MaLR 1 364 0 242 274 113 75 chr3 38873166 38873352 -179163806 + MIR SINE MIR 53 245 -17 983 226 65 5 chr3 38873900 38874117 -179163041 - MLT1D LTR MaLR 0 505 276 21 0 0 0 chr3 38876234 38876255 -179160903 + AT_rich Low_complexity Low_complexity 1 21 0 259 329 0 0 chr3 38878073 38878158 -179159000 + MIR SINE MIR 133 217 -45 3156 247 48 40 chr3 38878336 38881632 -179155526 + L1M3c LINE L1 11 3052 -3158 298 284 95 17 chr3 38882466 38882582 -179154576 - MIR SINE MIR -17 245 121 596 251 11 49 chr3 38882669 38882852 -179154306 + MIR SINE MIR 66 241 -21 237 159 0 0 chr3 38883296 38883340 -179153818 + (TA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr3 38883717 38883740 -179153418 + AT_rich Low_complexity Low_complexity 1 23 0 222 91 0 0 chr3 38884968 38885001 -179152157 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 1138 54 16 1 chr3 38885001 38885182 -179151976 - L1PA4 LINE L1 -24 6131 5941 1095 251 43 10 chr3 38885198 38885497 -179151661 - L1ME1 LINE L1 -150 6016 5708 247 150 17 67 chr3 38885649 38885709 -179151449 + L1PB1 LINE L1 144 200 -6663 13243 170 56 39 chr3 38885709 38891858 -179145300 + L1PB1 LINE L1 634 6867 0 1746 124 0 4 chr3 38892021 38892279 -179144879 - AluSc SINE Alu -52 257 1 839 315 31 31 chr3 38892279 38892822 -179144336 - L1MC4a LINE L1 -1949 5859 5317 29 0 0 0 chr3 38893092 38893121 -179144037 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 38893172 38893195 -179143963 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr3 38894873 38894900 -179142258 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 740 213 0 0 chr3 38896269 38896405 -179140753 + MIR SINE MIR 25 160 -102 2055 125 30 3 chr3 38896714 38897017 -179140141 + AluSx SINE Alu 1 311 -1 2161 183 44 2 chr3 38897550 38897959 -179139199 + MSTB LTR MaLR 1 426 0 2437 61 0 0 chr3 38898063 38898358 -179138800 + AluY SINE Alu 1 295 -16 407 270 124 27 chr3 38899184 38899369 -179137789 + L2 LINE L2 3111 3313 0 258 273 0 125 chr3 38899413 38899541 -179137617 + MIR3 SINE MIR 85 196 -12 970 166 11 6 chr3 38899767 38899942 -179137216 - Tigger1 DNA MER2_type -1 2417 2242 431 129 0 14 chr3 38899942 38900012 -179137146 - AluJ/FLAM SINE Alu -239 73 5 2965 118 5 2 chr3 38900017 38900465 -179136693 - Tigger1 DNA MER2_type -670 1748 1300 2171 107 0 7 chr3 38900465 38900764 -179136394 - AluSc SINE Alu -12 297 1 4090 121 22 5 chr3 38900765 38901404 -179135754 - Tigger1 DNA MER2_type -1286 1132 483 1809 186 25 8 chr3 38901648 38902003 -179135155 - Tigger1 DNA MER2_type -1932 486 126 799 186 21 4 chr3 38902003 38902240 -179134918 + GA-rich Low_complexity Low_complexity 1 241 0 234 91 0 0 chr3 38904924 38904957 -179132201 + (CA)n Simple_repeat Simple_repeat 1 33 0 2169 107 0 3 chr3 38905195 38905485 -179131673 - AluSx SINE Alu -9 303 15 663 171 0 8 chr3 38905675 38905786 -179131372 + L1 LINE L1 3713 3823 -2318 1979 181 44 7 chr3 38905786 38906121 -179131037 + L1MA9 LINE L1 5883 6240 -72 189 0 0 0 chr3 38906121 38906142 -179131016 + (TA)n Simple_repeat Simple_repeat 2 22 0 1979 181 44 7 chr3 38906142 38906213 -179130945 + L1MA9 LINE L1 6240 6307 -5 454 79 26 0 chr3 38906971 38907047 -179130111 + (TA)n Simple_repeat Simple_repeat 2 79 0 1421 201 10 41 chr3 38907390 38907704 -179129454 + AluJb SINE Alu 6 309 -3 38 68 0 0 chr3 38908925 38908998 -179128160 + AT_rich Low_complexity Low_complexity 1 73 0 1597 213 50 39 chr3 38909498 38910015 -179127143 - Charlie1b DNA MER1_type 0 523 1 330 286 76 43 chr3 38910033 38910565 -179126593 - L1ME LINE L1 -299 5822 5268 182 133 0 0 chr3 38910942 38910972 -179126186 + L2 LINE L2 3284 3313 0 214 100 0 0 chr3 38911809 38911839 -179125319 + L2 LINE L2 3243 3272 0 1850 215 130 0 chr3 38911923 38912369 -179124789 + MLT1D LTR MaLR 2 505 0 1702 169 20 10 chr3 38913012 38913308 -179123850 + AluSx SINE Alu 1 299 -13 272 25 50 0 chr3 38913568 38913608 -179123550 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 235 339 47 8 chr3 38914020 38914147 -179123011 + MIR SINE MIR 70 201 -61 313 311 91 63 chr3 38914148 38914434 -179122724 - MLT1I LTR MaLR 0 409 116 234 236 18 0 chr3 38914499 38914554 -179122604 + MIR SINE MIR 198 253 -9 235 280 329 0 chr3 38914610 38914753 -179122405 + MIR SINE MIR 66 255 -7 776 319 149 42 chr3 38914933 38915841 -179121317 - L2 LINE L2 -2 3311 2309 2359 51 0 3 chr3 38916985 38917277 -179119881 - AluY SINE Alu -2 309 19 359 282 58 32 chr3 38917891 38918047 -179119111 + L1MC5 LINE L1 7754 7913 -48 24 0 0 0 chr3 38918055 38918079 -179119079 + AT_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr3 38918510 38918549 -179118609 + (TG)n Simple_repeat Simple_repeat 2 40 0 2186 119 0 10 chr3 38918577 38918880 -179118278 + AluSg SINE Alu 5 304 -6 209 357 164 7 chr3 38920206 38920346 -179116812 + L2 LINE L2 2816 2977 -337 514 323 129 0 chr3 38920384 38920632 -179116526 + L2 LINE L2 3034 3313 0 318 293 108 45 chr3 38920724 38920946 -179116212 + MIR SINE MIR 26 261 -1 6120 100 10 6 chr3 38921150 38922668 -179114490 + L1PA13 LINE L1 4621 6161 -2 204 40 0 0 chr3 38922759 38922784 -179114374 + (T)n Simple_repeat Simple_repeat 1 25 0 2672 58 0 0 chr3 38922784 38923110 -179114048 - LTR17 LTR ERV1 -454 326 1 210 204 23 0 chr3 38924446 38924490 -179112668 - L2 LINE L2 -1 3312 3268 288 345 29 43 chr3 38925414 38925553 -179111605 + L2 LINE L2 3173 3309 -4 26 30 0 0 chr3 38925588 38925621 -179111537 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr3 38926706 38926726 -179110432 + (CCCCCA)n Simple_repeat Simple_repeat 6 25 0 365 98 0 66 chr3 38927085 38927146 -179110012 - 5S rRNA rRNA -64 57 1 240 226 0 0 chr3 38929193 38929255 -179107903 + (CA)n Simple_repeat Simple_repeat 2 63 0 1746 78 25 0 chr3 38930203 38930445 -179106713 - AluY SINE Alu -5 306 59 589 209 139 47 chr3 38931501 38931673 -179105485 - MER5A DNA MER1_type 0 189 2 208 139 0 28 chr3 38931717 38931753 -179105405 + (CA)n Simple_repeat Simple_repeat 1 35 0 1105 139 0 37 chr3 38932032 38932219 -179104939 + AluSg/x SINE Alu 129 308 -2 1629 28 0 51 chr3 38932514 38932731 -179104427 + L1PA5 LINE L1 5949 6154 0 24 53 0 0 chr3 38933261 38933299 -179103859 + AT_rich Low_complexity Low_complexity 1 38 0 331 259 12 0 chr3 38934068 38934153 -179103005 - MIR SINE MIR -77 185 100 332 133 22 44 chr3 38934162 38934252 -179102906 + GA-rich Low_complexity Low_complexity 2 89 0 211 313 30 20 chr3 38934255 38934288 -179102870 - MIR SINE MIR -128 134 103 964 101 0 43 chr3 38934288 38934476 -179102682 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 211 313 30 20 chr3 38934476 38934541 -179102617 - MIR SINE MIR -159 103 35 504 285 64 12 chr3 38935216 38935388 -179101770 + MIR SINE MIR 48 228 -34 198 0 0 0 chr3 38935418 38935440 -179101718 + (A)n Simple_repeat Simple_repeat 1 22 0 591 234 19 5 chr3 38935491 38935652 -179101506 + L1MA10 LINE L1 6017 6334 0 415 208 115 118 chr3 38936818 38937106 -179100052 - MLT1H LTR MaLR -196 353 67 267 323 0 0 chr3 38938740 38938833 -179098325 + (TA)n Simple_repeat Simple_repeat 1 93 0 21 0 0 0 chr3 38940448 38940469 -179096689 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 38940722 38940746 -179096412 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 340 94 19 0 chr3 38941491 38941544 -179095614 - Charlie1 DNA MER1_type -1 2760 2707 687 279 23 30 chr3 38941558 38941820 -179095338 - Charlie1 DNA MER1_type -159 2602 2343 248 358 45 0 chr3 38941819 38941886 -179095272 - Charlie1 DNA MER1_type -2691 70 1 * 6349 183 12 5 chr3 38942101 38943290 -179093868 - L1P LINE L1 -1161 4985 3789 501 230 29 35 chr3 38944763 38944937 -179092221 - MER104 DNA Tc2 -7 173 1 250 259 0 0 chr3 38945799 38945857 -179091301 - L2 LINE L2 0 3313 3256 271 337 110 12 chr3 38946471 38946726 -179090432 - L2 LINE L2 -1030 2284 2005 1885 157 3 32 chr3 38947292 38947637 -179089521 - MER1B DNA MER1_type -2 335 1 1558 160 34 22 chr3 38948115 38948383 -179088775 + AluJo SINE Alu 17 287 -25 27 62 0 0 chr3 38948681 38948729 -179088429 + AT_rich Low_complexity Low_complexity 1 48 0 887 254 42 5 chr3 38950702 38950919 -179086239 - MIR SINE MIR -36 226 2 581 242 13 19 chr3 38952223 38952380 -179084778 - L1MD2 LINE L1 -13 6346 6191 703 235 30 18 chr3 38952622 38952788 -179084370 + MIR SINE MIR 40 207 -55 443 99 0 14 chr3 38953762 38953833 -179083325 + (TC)n Simple_repeat Simple_repeat 1 70 0 228 321 98 27 chr3 38954965 38955077 -179082081 - L2 LINE L2 -2 3270 3151 220 289 35 18 chr3 38955553 38955667 -179081491 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 * 341 256 17 17 chr3 38955582 38955699 -179081459 + (TATG)n Simple_repeat Simple_repeat 3 119 0 283 202 81 81 chr3 38955718 38955817 -179081341 - L2 LINE L2 -40 3273 3175 327 337 82 5 chr3 38955893 38956089 -179081069 - L1MC4 LINE L1 -143 7899 7689 186 253 127 0 chr3 38956132 38956211 -179080947 - MIR SINE MIR -57 205 117 21 0 0 0 chr3 38956554 38956575 -179080583 + AT_rich Low_complexity Low_complexity 1 21 0 233 255 0 0 chr3 38956816 38956863 -179080295 - L2 LINE L2 -56 3216 3170 2139 131 24 29 chr3 38957132 38957506 -179079652 + THE1C LTR MaLR 1 372 -3 186 118 0 0 chr3 38958144 38958178 -179078980 + (TTATA)n Simple_repeat Simple_repeat 2 35 0 192 372 0 21 chr3 38958975 38959069 -179078089 + L2 LINE L2 2869 2960 -312 543 304 77 22 chr3 38959256 38959437 -179077721 + MIR SINE MIR 1 191 -71 21 57 0 0 chr3 38960718 38960753 -179076405 + AT_rich Low_complexity Low_complexity 1 35 0 1086 193 18 14 chr3 38962193 38962411 -179074747 - MER20 DNA MER1_type 0 219 1 411 78 0 0 chr3 38962658 38962722 -179074436 + (TATG)n Simple_repeat Simple_repeat 2 65 0 384 230 143 24 chr3 38963771 38963897 -179073261 - L2 LINE L2 0 3313 3173 521 228 74 37 chr3 38963900 38964062 -179073096 - MLT1A2 LTR MaLR 0 390 223 1318 174 19 0 chr3 38964068 38964303 -179072855 - AluJb SINE Alu 0 308 70 812 248 26 22 chr3 38964319 38964545 -179072613 - MLT1A2 LTR MaLR -147 227 1 23 0 0 0 chr3 38964545 38964568 -179072590 + AT_rich Low_complexity Low_complexity 1 23 0 395 325 87 33 chr3 38964573 38964965 -179072193 - L2 LINE L2 -167 3146 2729 346 205 50 56 chr3 38965113 38965137 -179072021 - L1MA10 LINE L1 -1 6333 6310 2233 238 79 2 chr3 38965137 38965756 -179071402 - L1ME2 LINE L1 -13 6151 5485 312 27 0 0 chr3 38968586 38968623 -179068535 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 159 0 0 chr3 38969817 38969861 -179067297 + GA-rich Low_complexity Low_complexity 2 45 0 263 232 195 0 chr3 38970508 38970590 -179066568 + MIR SINE MIR 109 206 -56 203 175 25 0 chr3 38971468 38971508 -179065650 + (TG)n Simple_repeat Simple_repeat 2 42 0 473 250 97 0 chr3 38971982 38972158 -179065000 + MIR SINE MIR 70 262 0 379 294 113 72 chr3 38974759 38974906 -179062252 - L1ME2 LINE L1 -860 5286 5146 1041 219 18 5 chr3 38974906 38975125 -179062033 - MER58A DNA MER1_type 0 224 3 379 294 113 72 chr3 38975125 38975510 -179061648 - L1ME2 LINE L1 -1000 5146 4778 1265 143 65 0 chr3 38975510 38975726 -179061432 + MER30 DNA MER1_type 1 230 0 379 294 113 72 chr3 38975726 38976054 -179061104 - L1ME2 LINE L1 -1368 4778 4390 1135 243 62 14 chr3 38976055 38976367 -179060791 - MSTD LTR MaLR 0 396 101 25 0 0 0 chr3 38976418 38976443 -179060715 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr3 38976462 38976515 -179060643 + AT_rich Low_complexity Low_complexity 1 53 0 248 281 148 31 chr3 38976839 38976967 -179060191 - L1MC4 LINE L1 -315 7727 7585 383 305 109 55 chr3 38977287 38977635 -179059523 - L1ME2 LINE L1 -2191 3955 3589 1694 191 0 10 chr3 38977819 38978123 -179059035 + AluJo SINE Alu 1 301 -11 197 326 54 33 chr3 38978585 38978677 -179058481 - L2 LINE L2 -12 3301 3208 235 189 0 19 chr3 38980581 38980634 -179056524 - LTR66 LTR ERVL -155 455 404 185 310 8 101 chr3 38980964 38981093 -179056065 - L2 LINE L2 -213 3059 2943 424 295 51 51 chr3 38981611 38981828 -179055330 + MARNA DNA Mariner 22 238 -348 400 184 9 18 chr3 38981864 38981978 -179055180 + (TGGA)n Simple_repeat Simple_repeat 3 115 0 475 278 72 28 chr3 38986939 38987119 -179050039 - L2 LINE L2 -4 3309 3122 364 328 22 45 chr3 38987267 38987401 -179049757 - L2 LINE L2 -5 3267 3137 358 215 38 0 chr3 38987899 38987978 -179049180 - MIR SINE MIR -68 140 59 1112 107 0 0 chr3 38990573 38990723 -179046435 + AluY SINE Alu 1 150 -161 2094 104 0 7 chr3 38990955 38991242 -179045916 - AluSq SINE Alu -26 287 3 2844 13 0 0 chr3 38992085 38992401 -179044757 + AluYb8 SINE Alu 1 316 -2 204 125 0 0 chr3 38994248 38994280 -179042878 + (T)n Simple_repeat Simple_repeat 1 32 0 2290 96 10 0 chr3 38994436 38994739 -179042419 + AluSp SINE Alu 2 307 -6 231 270 146 0 chr3 38995619 38995708 -179041450 - MER5A DNA MER1_type -84 105 4 23 0 0 0 chr3 38998054 38998077 -179039081 + AT_rich Low_complexity Low_complexity 1 23 0 231 173 0 0 chr3 38998077 38998129 -179039029 - L1MC4 LINE L1 -1339 6703 6652 24 53 0 0 chr3 38998182 38998220 -179038938 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr3 38999454 38999483 -179037675 + AT_rich Low_complexity Low_complexity 1 29 0 2572 45 0 3 chr3 38999982 39000292 -179036866 - AluY SINE Alu -2 309 1 818 199 141 21 chr3 39000379 39000570 -179036588 - MER20 DNA MER1_type 0 219 6 26 30 0 0 chr3 39000597 39000630 -179036528 + AT_rich Low_complexity Low_complexity 1 33 0 254 320 41 74 chr3 39000869 39000991 -179036167 - L2 LINE L2 -2 3270 3153 243 0 0 0 chr3 39001512 39001539 -179035619 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 475 191 12 0 chr3 39002294 39002378 -179034780 - MER5A DNA MER1_type -6 183 99 21 0 0 0 chr3 39005273 39005294 -179031864 + AT_rich Low_complexity Low_complexity 1 21 0 226 347 80 34 chr3 39006983 39007159 -179029999 + MIR3 SINE MIR 19 202 -6 506 287 72 26 chr3 39008664 39008859 -179028299 + MIR SINE MIR 47 250 -12 395 286 42 30 chr3 39009039 39009207 -179027951 - Charlie8 DNA MER1_type -4 2413 2244 478 266 20 79 chr3 39009268 39009471 -179027687 - Charlie8 DNA MER1_type -2141 276 86 712 334 66 60 chr3 39009522 39010250 -179026908 + L2 LINE L2 2063 2794 -520 437 322 95 33 chr3 39011573 39012107 -179025051 + L1ME4a LINE L1 5291 5884 -237 1363 222 9 19 chr3 39012116 39012431 -179024727 + AluJo SINE Alu 1 312 0 289 264 85 16 chr3 39012492 39012621 -179024537 + L1ME4a LINE L1 5970 6107 -14 337 188 0 31 chr3 39014578 39014642 -179022516 + L2 LINE L2 3207 3268 -4 25 51 0 0 chr3 39014926 39014965 -179022193 + AT_rich Low_complexity Low_complexity 1 39 0 303 248 50 69 chr3 39016302 39016403 -179020755 - L2 LINE L2 -1 3271 3173 1342 118 0 47 chr3 39016672 39016951 -179020207 + L1PA4 LINE L1 5887 6152 -3 6844 65 10 3 chr3 39016966 39018084 -179019074 + L1PA7 LINE L1 5017 6154 0 242 35 35 69 chr3 39018796 39018854 -179018304 + (TTTTA)n Simple_repeat Simple_repeat 3 58 0 22 0 0 0 chr3 39020270 39020292 -179016866 + AT_rich Low_complexity Low_complexity 1 22 0 185 171 0 0 chr3 39021114 39021149 -179016009 - L2 LINE L2 -1 3312 3278 21 36 0 0 chr3 39021850 39021878 -179015280 + AT_rich Low_complexity Low_complexity 1 28 0 1173 235 0 0 chr3 39022271 39022488 -179014670 - MER58A DNA MER1_type -7 217 1 40 21 0 0 chr3 39022736 39022783 -179014375 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr3 39024416 39024438 -179012720 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 39024827 39024855 -179012303 + AT_rich Low_complexity Low_complexity 1 28 0 1124 289 43 20 chr3 39025998 39026465 -179010693 - MER90 LTR ERV1 -7 607 94 281 250 0 62 chr3 39026642 39026722 -179010436 - MIR SINE MIR -13 249 175 196 349 57 53 chr3 39027173 39027437 -179009721 + L2 LINE L2 2139 2403 -911 500 330 124 56 chr3 39029699 39030370 -179006788 + L2 LINE L2 2584 3272 0 22 0 0 0 chr3 39030881 39030903 -179006255 + AT_rich Low_complexity Low_complexity 1 22 0 203 272 216 56 chr3 39032092 39032254 -179004904 + MIR SINE MIR 8 195 -67 697 170 15 102 chr3 39032337 39032543 -179004615 + MER5A DNA MER1_type 1 188 -1 2398 123 27 0 chr3 39032618 39032983 -179004175 - THE1C LTR MaLR 0 375 1 10565 113 31 3 chr3 39032983 39034520 -179002638 - THE1C-int LTR MaLR 0 1580 1 2512 123 11 11 chr3 39034520 39034895 -179002263 - THE1C LTR MaLR 0 375 1 477 95 82 0 chr3 39034981 39035128 -179002030 + (TA)n Simple_repeat Simple_repeat 1 159 0 693 209 25 18 chr3 39036247 39036410 -179000748 + MER5B DNA MER1_type 8 171 -7 1894 160 3 3 chr3 39036568 39036868 -179000290 + AluSx SINE Alu 1 300 -12 9306 176 14 49 chr3 39037747 39040497 -178996661 - L1PB1 LINE L1 -1 6866 4256 1741 107 0 4 chr3 39040497 39040731 -178996427 - AluSc SINE Alu -76 233 1 9306 176 14 49 chr3 39040731 39041295 -178995863 - L1PB1 LINE L1 -2611 4256 3674 268 242 33 52 chr3 39041296 39041449 -178995709 - L1PB1 LINE L1 -6105 758 609 1267 285 47 15 chr3 39041476 39042005 -178995153 - L1PB1 LINE L1 -6312 551 6 198 0 0 0 chr3 39044504 39044526 -178992632 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 234 91 0 0 chr3 39044763 39044796 -178992362 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1354 325 117 24 chr3 39046783 39047542 -178989616 + L2 LINE L2 713 1542 -1772 826 240 77 40 chr3 39047564 39047914 -178989244 - L1ME3A LINE L1 0 6170 5808 33 43 0 0 chr3 39047914 39047961 -178989197 + AT_rich Low_complexity Low_complexity 1 47 0 193 194 50 0 chr3 39047965 39048125 -178989033 + (TA)n Simple_repeat Simple_repeat 1 168 0 24 0 0 0 chr3 39048136 39048160 -178988998 + AT_rich Low_complexity Low_complexity 1 24 0 221 158 58 0 chr3 39048166 39048286 -178988872 + (TA)n Simple_repeat Simple_repeat 1 127 0 1195 264 50 10 chr3 39048295 39048678 -178988480 - L1ME3A LINE L1 -399 5771 5374 356 161 65 21 chr3 39048721 39048814 -178988344 - L1MD1 LINE L1 0 6242 6146 995 251 79 30 chr3 39048814 39049284 -178987874 - L1ME3A LINE L1 -1342 4804 4312 21 0 0 0 chr3 39050444 39050465 -178986693 + AT_rich Low_complexity Low_complexity 1 21 0 1630 150 38 24 chr3 39051988 39052281 -178984877 + AluJo SINE Alu 1 297 -15 246 62 0 0 chr3 39052294 39052326 -178984832 + (CAA)n Simple_repeat Simple_repeat 2 33 0 31284 111 19 51 chr3 39052596 39058949 -178978209 - L1PA7 LINE L1 -11 6143 1 1894 168 0 16 chr3 39059796 39060112 -178977046 + AluSx SINE Alu 1 311 -1 365 255 113 9 chr3 39060865 39060971 -178976187 - L2 LINE L2 -2 3311 3195 395 214 0 0 chr3 39061706 39061776 -178975382 + MER5A DNA MER1_type 4 73 -116 603 182 0 66 chr3 39061777 39061898 -178975260 + FLAM_A SINE Alu 1 113 -29 298 276 229 0 chr3 39061933 39062038 -178975120 + MER5A DNA MER1_type 61 189 0 704 237 29 0 chr3 39062046 39062219 -178974939 - MER5B DNA MER1_type 0 178 1 210 37 0 0 chr3 39063754 39063781 -178973377 + (A)n Simple_repeat Simple_repeat 1 27 0 833 259 156 24 chr3 39064572 39064943 -178972215 - MLT1H LTR MaLR 0 549 130 202 250 40 66 chr3 39065070 39065146 -178972012 + MIR SINE MIR 117 190 -72 1270 198 116 74 chr3 39065491 39065602 -178971556 - MER31B LTR ERV1 0 485 380 2289 48 0 52 chr3 39065602 39065911 -178971247 + AluY SINE Alu 1 293 -18 1270 198 116 74 chr3 39065911 39066290 -178970868 - MER31B LTR ERV1 -105 380 1 1520 229 22 102 chr3 39066710 39067209 -178969949 + MLT2B1 LTR ERVL 2 460 -60 30536 37 22 2 chr3 39067215 39073145 -178964013 + L1PA4 LINE L1 1 6074 -81 299 312 98 34 chr3 39124030 39124235 -178912923 + MLT1J2 LTR MaLR 2 219 -231 433 241 86 52 chr3 39125089 39125318 -178911840 + L1MCa LINE L1 17 564 -5858 860 207 79 20 chr3 39125336 39125539 -178911619 + LTR32 LTR ERVL 15 229 -242 387 335 53 16 chr3 39126423 39126611 -178910547 + MIR SINE MIR 65 259 -3 186 43 0 0 chr3 39127250 39127273 -178909885 + (CA)n Simple_repeat Simple_repeat 2 24 0 440 333 42 0 chr3 39127704 39127824 -178909334 - MER91A DNA MER1_type -71 125 1 366 276 71 67 chr3 39129054 39129308 -178907850 - L1ME3A LINE L1 -1 6169 5915 1362 165 37 0 chr3 39129558 39129814 -178907344 - AluJb SINE Alu 0 321 58 1941 153 3 3 chr3 39130345 39130640 -178906518 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr3 39130640 39130663 -178906495 + (TA)n Simple_repeat Simple_repeat 1 23 0 45 0 0 0 chr3 39130663 39130708 -178906450 + AT_rich Low_complexity Low_complexity 1 45 0 323 255 0 43 chr3 39130718 39130812 -178906346 - L1MC4 LINE L1 -1339 6703 6614 198 236 0 0 chr3 39130813 39130868 -178906290 + (TA)n Simple_repeat Simple_repeat 1 55 0 272 291 24 31 chr3 39131011 39131138 -178906020 - L1MCc LINE L1 -6019 404 279 410 280 66 45 chr3 39131408 39131694 -178905464 + L1ME LINE L1 4288 4579 -1567 2280 69 0 29 chr3 39132002 39132308 -178904850 + AluY SINE Alu 1 297 -14 24 0 0 0 chr3 39132528 39132552 -178904606 + AT_rich Low_complexity Low_complexity 1 24 0 631 293 186 17 chr3 39132752 39133107 -178904051 + L1ME LINE L1 5389 5803 -318 385 328 75 36 chr3 39133112 39133420 -178903738 - MER102b DNA MER1_type 0 341 22 289 323 40 40 chr3 39133553 39133652 -178903506 + L2 LINE L2 3171 3269 -3 431 275 5 76 chr3 39133793 39134004 -178903154 - L2 LINE L2 0 3313 3118 1834 283 21 8 chr3 39134016 39134549 -178902609 - MER74B LTR ERVL -10 612 73 824 261 8 69 chr3 39134562 39134940 -178902218 - L2 LINE L2 -190 3123 2770 612 313 65 53 chr3 39134979 39135493 -178901665 + L1M4 LINE L1 3791 4310 -1836 484 310 73 57 chr3 39135612 39135980 -178901178 + L1M4 LINE L1 4525 4898 -1248 1602 174 43 46 chr3 39135985 39136358 -178900800 - THE1C LTR MaLR -3 372 1 367 311 81 48 chr3 39136365 39136574 -178900584 + L1M4 LINE L1 4918 5133 -1013 1788 201 37 3 chr3 39137033 39137381 -178899777 + MLT1A1 LTR MaLR 6 365 0 2028 42 118 4 chr3 39137414 39137676 -178899482 + AluY SINE Alu 1 292 -19 180 0 0 0 chr3 39138368 39138388 -178898770 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 71 0 0 chr3 39140139 39140181 -178896977 + AT_rich Low_complexity Low_complexity 1 42 0 240 159 45 0 chr3 39142190 39142254 -178894904 + AluYb8 SINE Alu 242 307 0 25 0 0 0 chr3 39144386 39144411 -178892747 + AT_rich Low_complexity Low_complexity 1 25 0 577 225 42 28 chr3 39145491 39145633 -178891525 + MIR SINE MIR 118 261 -1 211 242 41 0 chr3 39146220 39146282 -178890876 - MIR SINE MIR -67 141 88 234 0 0 0 chr3 39147320 39147346 -178889812 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 1830 127 0 57 chr3 39147520 39147851 -178889307 + L1PB1 LINE L1 5801 6112 -39 256 241 217 6 chr3 39148398 39148564 -178888594 - Charlie4 DNA MER1_type -3 1958 1758 825 223 41 0 chr3 39148582 39148779 -178888379 - Charlie4 DNA MER1_type -1723 238 34 309 318 44 61 chr3 39148856 39149286 -178887872 - L2 LINE L2 -195 3077 2655 261 234 76 94 chr3 39149376 39149547 -178887611 + MLT1H LTR MaLR 1 168 -381 322 373 77 26 chr3 39149846 39150380 -178886778 - L2 LINE L2 -773 2541 1981 28 48 0 0 chr3 39151386 39151428 -178885730 + AT_rich Low_complexity Low_complexity 1 42 0 826 211 164 14 chr3 39151428 39151708 -178885450 - MER5C DNA MER1_type -1 323 2 2358 100 0 0 chr3 39151724 39152035 -178885123 - AluY SINE Alu 0 311 1 895 264 98 14 chr3 39152900 39153371 -178883787 - MLT1G LTR MaLR -12 578 1 333 167 154 26 chr3 39153372 39153450 -178883708 + MER39 LTR ERV1 48 135 -572 * 1893 200 28 48 chr3 39153423 39153473 -178883685 + MER39 LTR ERV1 257 306 -401 2158 131 13 46 chr3 39153473 39153861 -178883297 + THE1C LTR MaLR 1 375 0 1893 200 28 48 chr3 39153861 39154270 -178882888 + MER39 LTR ERV1 306 707 0 294 297 230 7 chr3 39155490 39155638 -178881520 - MER5A DNA MER1_type 0 189 9 370 308 21 35 chr3 39156504 39156647 -178880511 + MIR SINE MIR 49 189 -73 281 178 0 0 chr3 39157074 39157119 -178880039 - 5S rRNA rRNA -76 45 1 347 302 0 0 chr3 39157151 39157237 -178879921 + L2 LINE L2 3228 3313 0 217 355 19 28 chr3 39157309 39157416 -178879742 - MER5B DNA MER1_type -72 106 1 4131 139 28 12 chr3 39157589 39158330 -178878828 - L1MA4 LINE L1 -2 6298 5546 276 240 50 60 chr3 39159466 39159566 -178877592 - MER102b DNA MER1_type -11 330 232 243 125 0 0 chr3 39159676 39159716 -178877442 + (TTA)n Simple_repeat Simple_repeat 3 42 0 297 326 30 0 chr3 39160015 39160147 -178877011 - HAL1b LINE L1 -743 605 470 559 185 11 0 chr3 39160243 39160335 -178876823 + AluJ/FLAM SINE Alu 7 99 -213 324 70 0 0 chr3 39160454 39160497 -178876661 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 1943 148 10 3 chr3 39160833 39161137 -178876021 - AluSx SINE Alu -6 306 1 213 211 184 70 chr3 39161904 39162018 -178875140 + MIR3 SINE MIR 1 127 -81 2267 93 0 0 chr3 39162326 39162615 -178874543 - AluY SINE Alu -12 299 11 5941 93 30 67 chr3 39162627 39163639 -178873519 - L1PA10 LINE L1 0 6168 5223 2120 134 0 0 chr3 39163639 39163938 -178873220 + AluSx SINE Alu 1 299 -13 5941 93 30 67 chr3 39163938 39164722 -178872436 - L1PA10 LINE L1 -945 5223 4412 9823 155 16 3 chr3 39164724 39166450 -178870708 + L1PA10 LINE L1 2695 4442 -1704 21 0 0 0 chr3 39166703 39166724 -178870434 + AT_rich Low_complexity Low_complexity 1 21 0 642 274 151 26 chr3 39169163 39169620 -178867538 - HAL1 LINE L1 -3 2504 1991 250 202 218 8 chr3 39169755 39169879 -178867279 + L1ME3A LINE L1 5259 5408 -756 477 288 59 0 chr3 39170069 39170239 -178866919 + L1ME3A LINE L1 5681 5860 -310 1394 192 11 49 chr3 39172904 39173253 -178863905 - MLT1B LTR MaLR -21 369 34 35126 47 4 45 chr3 39173257 39173921 -178863237 + L1P LINE L1 3 693 -5453 627 221 7 7 chr3 39173921 39174061 -178863097 - MLT1B LTR MaLR -21 369 230 35126 47 4 45 chr3 39174061 39178248 -178858910 + L1P LINE L1 693 4789 -1357 7414 31 0 0 chr3 39178348 39179228 -178857930 + L1PA4 LINE L1 5276 6155 0 519 72 91 6 chr3 39179459 39179798 -178857360 + (TA)n Simple_repeat Simple_repeat 1 367 0 33 25 0 0 chr3 39179905 39179945 -178857213 + AT_rich Low_complexity Low_complexity 1 40 0 336 296 32 0 chr3 39180226 39180351 -178856807 - L2 LINE L2 -258 3055 2927 223 277 62 36 chr3 39180505 39180617 -178856541 - L2 LINE L2 -182 3090 2976 1888 149 35 51 chr3 39180716 39181086 -178856072 - THE1B LTR MaLR 0 364 1 11626 100 3 1 chr3 39181086 39182662 -178854496 - THE1B-int LTR MaLR 0 1580 1 2079 113 38 57 chr3 39182662 39183033 -178854125 - THE1B LTR MaLR 0 364 1 870 179 68 133 chr3 39184335 39184734 -178852424 - MLT1A2 LTR MaLR 0 426 1 5921 99 4 21 chr3 39186635 39186744 -178850414 + L1PA14 LINE L1 5223 5332 -829 2238 99 3 0 chr3 39186744 39187038 -178850120 + AluY SINE Alu 1 295 -16 5921 99 4 21 chr3 39187038 39187880 -178849278 + L1PA14 LINE L1 5332 6159 -2 249 119 0 0 chr3 39190446 39190488 -178846670 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 223 318 106 12 chr3 39190490 39190575 -178846583 - L2 LINE L2 -31 3241 3149 1781 216 63 44 chr3 39190772 39191359 -178845799 + L1ME1 LINE L1 5564 6161 -5 1117 178 190 26 chr3 39192113 39192382 -178844776 + MLT1D LTR MaLR 193 505 0 403 269 60 107 chr3 39192610 39192908 -178844250 + L2 LINE L2 3029 3312 -1 270 194 0 0 chr3 39193647 39193709 -178843449 + (CA)n Simple_repeat Simple_repeat 1 62 0 727 252 128 8 chr3 39193709 39193959 -178843199 + LTR16C LTR ERVL 141 420 -71 527 223 44 118 chr3 39194111 39194435 -178842723 - LTR25-int LTR ERV1 -984 4233 741 322 186 107 125 chr3 39194474 39194688 -178842470 - LTR25-int LTR ERV1 -2325 763 282 293 245 39 20 chr3 39194898 39195000 -178842158 - LTR25-int LTR ERV1 -6462 534 431 2422 130 162 2 chr3 39195222 39195654 -178841504 - MER61D LTR ERV1 0 501 1 683 109 21 0 chr3 39195656 39195783 -178841375 - L1M2 LINE L1 -721 5447 5317 420 340 162 20 chr3 39195984 39196440 -178840718 - LTR33 LTR ERVL -2 521 1 242 200 0 0 chr3 39197282 39197322 -178839836 + L3 LINE CR1 1530 1569 -8 2014 47 8 4 chr3 39197364 39197618 -178839540 + L1PA6 LINE L1 5900 6154 0 240 184 0 0 chr3 39197697 39197746 -178839412 + CT-rich Low_complexity Low_complexity 4 52 0 3773 126 30 75 chr3 39197756 39198479 -178838679 - LTR8 LTR ERV1 0 691 1 1275 255 103 11 chr3 39198486 39198738 -178838420 - MLT1G1 LTR MaLR -179 416 116 3077 189 45 32 chr3 39198738 39199456 -178837702 + LTR8A LTR ERV1 1 727 0 1275 255 103 11 chr3 39199456 39199583 -178837575 - MLT1G1 LTR MaLR -479 116 2 23 0 0 0 chr3 39199919 39199942 -178837216 + AT_rich Low_complexity Low_complexity 1 23 0 321 288 118 20 chr3 39200620 39200773 -178836385 - MLT1H LTR MaLR -315 234 67 1598 187 45 84 chr3 39200916 39201382 -178835776 + MLT1C LTR MaLR 6 453 -14 246 299 118 16 chr3 39202029 39202156 -178835002 + L2 LINE L2 2916 3055 -217 2293 125 30 22 chr3 39202730 39203091 -178834067 - THE1B LTR MaLR 0 364 1 645 265 40 26 chr3 39203314 39203735 -178833423 + MLT1G1 LTR MaLR 113 573 -22 945 241 18 18 chr3 39204159 39204383 -178832775 + MER58A DNA MER1_type 1 224 0 4375 74 35 8 chr3 39204628 39205220 -178831938 - LTR14B LTR ERVK 0 608 1 487 315 38 5 chr3 39205388 39205572 -178831586 - MLT1K LTR MaLR -248 340 151 747 168 31 42 chr3 39205688 39205879 -178831279 - MER53 DNA DNA 0 189 1 1698 189 16 7 chr3 39206212 39206518 -178830640 + AluSx SINE Alu 1 309 -3 6805 128 11 7 chr3 39206685 39207580 -178829578 - L1MA2 LINE L1 0 6304 5397 2319 138 5 27 chr3 39207580 39207951 -178829207 + THE1B LTR MaLR 2 364 0 6805 128 11 7 chr3 39207951 39208517 -178828641 - L1MA2 LINE L1 -907 5397 4835 317 285 79 30 chr3 39209197 39209362 -178827796 + MIR SINE MIR 63 235 -27 451 344 184 23 chr3 39209394 39209667 -178827491 - HAL1 LINE L1 -1602 905 677 2286 227 87 62 chr3 39209667 39210473 -178826685 + LTR1B LTR ERV1 1 826 0 451 344 184 23 chr3 39210473 39210684 -178826474 - HAL1 LINE L1 -1830 677 343 685 276 43 87 chr3 39210733 39211291 -178825867 + MLT1G LTR MaLR 20 595 0 260 326 49 28 chr3 39211367 39211511 -178825647 + MIR SINE MIR 60 206 -56 1014 198 11 0 chr3 39212362 39212549 -178824609 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr3 39212740 39212762 -178824396 + AT_rich Low_complexity Low_complexity 1 22 0 919 105 7 13 chr3 39213123 39213275 -178823883 + (TTTC)n Simple_repeat Simple_repeat 4 154 0 265 267 40 40 chr3 39213537 39213638 -178823520 + L2 LINE L2 2108 2208 -1106 425 289 182 11 chr3 39213743 39213930 -178823228 + MIR SINE MIR 44 262 0 211 254 48 0 chr3 39214438 39214501 -178822657 + MIR SINE MIR 139 204 -58 270 0 0 0 chr3 39215772 39215802 -178821356 + (CA)n Simple_repeat Simple_repeat 2 31 0 978 313 63 24 chr3 39215935 39216360 -178820798 - LTR16C LTR ERVL 0 491 50 3180 259 81 24 chr3 39216503 39217867 -178819291 + L1M4 LINE L1 3504 4944 -1202 299 304 28 31 chr3 39218148 39218347 -178818811 + MIR SINE MIR 2 171 -91 362 335 99 12 chr3 39219511 39219672 -178817486 + MLT2E LTR ERVL 34 208 -420 243 165 110 88 chr3 39219883 39219921 -178817237 + LTR33A LTR ERVL 431 467 -56 3953 176 93 5 chr3 39219921 39220533 -178816625 - MER6 DNA MER2_type 0 865 308 357 24 0 0 chr3 39220533 39220575 -178816583 + (CA)n Simple_repeat Simple_repeat 2 43 0 294 29 0 0 chr3 39220576 39220611 -178816547 + (TC)n Simple_repeat Simple_repeat 1 35 0 3953 176 93 5 chr3 39220611 39220791 -178816367 - MER6 DNA MER2_type -556 309 1 243 165 110 88 chr3 39220791 39220843 -178816315 + LTR33A LTR ERVL 467 523 0 268 224 0 0 chr3 39221196 39221245 -178815913 - MER6A DNA MER2_type -501 104 56 568 328 64 0 chr3 39221629 39221800 -178815358 + MIR SINE MIR 5 186 -76 2316 90 0 19 chr3 39222109 39222419 -178814739 + AluSx SINE Alu 1 304 -8 279 325 12 0 chr3 39222521 39222604 -178814554 - MER5A DNA MER1_type -104 85 2 606 271 93 29 chr3 39223845 39223979 -178813179 + LTR33 LTR ERVL 3 127 -394 2378 166 21 33 chr3 39223979 39224407 -178812751 + MSTB LTR MaLR 4 426 0 606 271 93 29 chr3 39224407 39224648 -178812510 + LTR33 LTR ERVL 127 427 -94 21 0 0 0 chr3 39224894 39224915 -178812243 + AT_rich Low_complexity Low_complexity 1 21 0 1875 180 21 12 chr3 39224989 39225323 -178811835 + MER1B DNA MER1_type 1 337 0 1593 162 84 36 chr3 39225488 39225846 -178811312 - THE1C LTR MaLR 0 375 1 2999 121 8 14 chr3 39225846 39226335 -178810823 - THE1C-int LTR MaLR 0 1580 1095 9994 109 18 3 chr3 39226352 39227961 -178809197 - L1P LINE L1 -1687 4459 2827 6651 85 7 0 chr3 39227961 39229461 -178807697 + L1PA8 LINE L1 4662 6166 -6 521 299 224 14 chr3 39229810 39230104 -178807054 - L2 LINE L2 -4 3309 2954 211 282 14 0 chr3 39230104 39230175 -178806983 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 216 341 40 62 chr3 39230964 39231190 -178805968 + L2 LINE L2 1876 2096 -1218 248 362 43 6 chr3 39231748 39231911 -178805247 + L2 LINE L2 2338 2506 -808 1062 208 59 87 chr3 39232412 39232801 -178804357 - LTR40b LTR ERVL -84 378 1 417 189 0 0 chr3 39232801 39232875 -178804283 + LTR16C LTR ERVL 416 489 -2 290 230 40 0 chr3 39233777 39233851 -178803307 + CT-rich Low_complexity Low_complexity 4 80 0 22 56 0 0 chr3 39234157 39234193 -178802965 + AT_rich Low_complexity Low_complexity 1 36 0 476 311 44 32 chr3 39234274 39234522 -178802636 - MIR SINE MIR 0 262 12 965 233 100 29 chr3 39235057 39235336 -178801822 + AluJb SINE Alu 2 300 -2 351 274 0 51 chr3 39235486 39235603 -178801555 - L1MC4 LINE L1 -1318 6724 6614 320 330 0 0 chr3 39235517 39235614 -178801544 + L1MC4 LINE L1 6614 6710 -1332 * 24 0 0 0 chr3 39236024 39236048 -178801110 + AT_rich Low_complexity Low_complexity 1 24 0 317 211 41 32 chr3 39236048 39236171 -178800987 - L1MA9 LINE L1 -22 6290 6167 3497 74 13 13 chr3 39236440 39236898 -178800260 + LTR22A LTR ERVK 1 458 0 549 277 28 5 chr3 39236931 39237144 -178800014 - L1MC4 LINE L1 -2000 5808 5591 1844 170 19 19 chr3 39238283 39238595 -178798563 - AluJo SINE Alu 0 312 1 1261 153 65 47 chr3 39239066 39239232 -178797926 - LTR36 LTR ERV1 0 611 449 2572 73 0 3 chr3 39239232 39239546 -178797612 - AluSp SINE Alu 0 313 1 1261 153 65 47 chr3 39239546 39239921 -178797237 - LTR36 LTR ERV1 -162 449 11 5245 97 21 9 chr3 39239921 39240691 -178796467 + MER4E LTR ERV1 1 779 0 1261 153 65 47 chr3 39240691 39240703 -178796455 - LTR36 LTR ERV1 -600 11 1 4106 100 3 102 chr3 39241068 39241805 -178795353 + MER4A LTR ERV1 1 664 0 339 127 0 18 chr3 39241947 39242002 -178795156 + AluSg/x SINE Alu 107 160 -142 230 232 37 0 chr3 39243144 39243226 -178793932 + (TA)n Simple_repeat Simple_repeat 2 86 0 1211 177 33 46 chr3 39243718 39244033 -178793125 + MLT1B LTR MaLR 1 226 -164 1570 222 19 19 chr3 39244033 39244398 -178792760 - MLT1A1 LTR MaLR 0 365 1 1211 177 33 46 chr3 39244398 39244559 -178792599 + MLT1B LTR MaLR 226 388 -2 1800 135 0 0 chr3 39244582 39244849 -178792309 - AluSx SINE Alu 0 306 40 740 221 6 18 chr3 39244876 39245039 -178792119 + MER20 DNA MER1_type 2 162 -57 284 226 0 0 chr3 39245081 39245134 -178792024 + MER20 DNA MER1_type 167 219 0 2054 152 0 0 chr3 39245520 39245817 -178791341 + AluSx SINE Alu 1 297 -15 399 316 63 42 chr3 39247191 39247695 -178789463 + L1MEc LINE L1 338 852 -5544 526 234 262 0 chr3 39247697 39247911 -178789247 + SATR1 Satellite Satellite 200 469 -1 928 249 186 54 chr3 39247943 39248851 -178788307 + SATR1 Satellite Satellite 1 1027 -1 1098 198 271 17 chr3 39249026 39249546 -178787612 + SATR1 Satellite Satellite 1 651 -1 820 209 309 6 chr3 39249631 39250051 -178787107 + SATR1 Satellite Satellite 1 547 -247 * 1337 183 53 0 chr3 39250045 39250307 -178786851 + Tigger3(Golem) DNA MER2_type 2753 3028 -1 1167 163 54 17 chr3 39250309 39250536 -178786622 - Tigger2 DNA MER2_type 0 2718 2480 549 209 14 65 chr3 39250536 39250675 -178786483 + FLAM_C SINE Alu 2 133 0 1167 163 54 17 chr3 39250675 39250687 -178786471 - Tigger2 DNA MER2_type -238 2480 2470 2239 99 0 0 chr3 39253555 39253886 -178783272 + AluSx SINE Alu 1 331 0 312 256 77 34 chr3 39254556 39254673 -178782485 + MER96B DNA MER1_type? 296 417 0 431 300 147 0 chr3 39255013 39255163 -178781995 + MER5A DNA MER1_type 12 183 -6 26 0 0 0 chr3 39255187 39255213 -178781945 + AT_rich Low_complexity Low_complexity 1 26 0 4257 127 6 51 chr3 39255218 39255942 -178781216 + LTR8 LTR ERV1 1 691 0 23 68 0 0 chr3 39255963 39256007 -178781151 + AT_rich Low_complexity Low_complexity 1 44 0 2372 71 0 20 chr3 39256287 39256583 -178780575 - AluSc SINE Alu -19 290 1 223 231 31 0 chr3 39256972 39257037 -178780121 + CT-rich Low_complexity Low_complexity 2 68 0 321 250 103 9 chr3 39257664 39257780 -178779378 + MIR SINE MIR 74 200 -62 2053 210 37 16 chr3 39257796 39258310 -178778848 - MER34 LTR ERV1 -10 532 8 216 0 0 0 chr3 39258526 39258550 -178778608 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 457 235 77 104 chr3 39258700 39258883 -178778275 - MER5B DNA MER1_type 0 178 1 429 290 9 3 chr3 39259200 39259383 -178777775 + L1MC4a LINE L1 6450 6577 -1231 534 199 233 98 chr3 39259396 39259674 -178777484 + MSTD LTR MaLR 3 339 -57 359 131 12 24 chr3 39259674 39259758 -178777400 - L1PB1 LINE L1 -3 6148 6066 534 199 233 98 chr3 39259758 39259826 -178777332 + MSTD LTR MaLR 339 396 0 2195 232 263 18 chr3 39259873 39260852 -178776306 + L1MC4 LINE L1 6686 7903 -139 275 250 190 20 chr3 39261338 39261438 -178775720 + L2 LINE L2 3195 3311 -2 257 298 42 83 chr3 39261752 39261920 -178775238 + MIR3 SINE MIR 46 206 -2 619 297 45 32 chr3 39262531 39262777 -178774381 - LTR16C LTR ERVL -11 480 232 922 277 104 14 chr3 39262785 39263139 -178774019 + MLT1G1 LTR MaLR 11 396 -199 7036 47 1 0 chr3 39263141 39264037 -178773121 - L1PA5 LINE L1 -4 6150 5254 2953 31 0 5 chr3 39264040 39264421 -178772737 + L1PA5 LINE L1 4851 5229 -917 639 273 23 27 chr3 39264425 39264645 -178772513 + MLT1G1 LTR MaLR 372 590 0 1408 158 0 5 chr3 39265709 39265918 -178771240 - AluJb SINE Alu -104 208 1 1161 216 127 60 chr3 39266261 39266742 -178770416 - LTR1B LTR ERV1 0 826 314 767 160 47 12 chr3 39268746 39268915 -178768243 - L1MB1 LINE L1 -13 6155 5981 2125 172 42 29 chr3 39268928 39269123 -178768035 - L1MA10 LINE L1 -4 6330 6139 2403 69 0 3 chr3 39269123 39269427 -178767731 - AluY SINE Alu -8 303 1 2125 172 42 29 chr3 39269427 39269708 -178767450 - L1MA10 LINE L1 -195 6139 5848 2156 202 8 38 chr3 39269708 39270198 -178766960 - MER61-int LTR ERV1 -494 4723 4247 834 215 72 65 chr3 39270374 39270695 -178766463 - L1ME3A LINE L1 -4 6166 5844 420 240 31 23 chr3 39271474 39271603 -178765555 + MIR SINE MIR 133 262 0 296 248 113 57 chr3 39271774 39271915 -178765243 + MIR SINE MIR 86 234 -28 2386 107 0 0 chr3 39272478 39272788 -178764370 - AluSg SINE Alu 0 310 1 1432 199 59 17 chr3 39272923 39273279 -178763879 - MER31B LTR ERV1 -95 371 1 6325 134 44 13 chr3 39274993 39276075 -178761083 + Tigger3b DNA MER2_type 116 1231 0 219 286 71 0 chr3 39276111 39276181 -178760977 - MIR3 SINE MIR -15 193 119 254 232 43 14 chr3 39276267 39276336 -178760822 + C-rich Low_complexity Low_complexity 4 74 0 386 145 0 12 chr3 39276341 39276424 -178760734 + (TC)n Simple_repeat Simple_repeat 1 82 0 300 354 39 0 chr3 39276442 39276572 -178760586 + MIR3 SINE MIR 32 166 -42 396 292 59 19 chr3 39276592 39276780 -178760378 + MLT1J2 LTR MaLR 20 213 -233 209 245 75 0 chr3 39277041 39277094 -178760064 - L2 LINE L2 -2 3311 3255 587 210 96 19 chr3 39278437 39278594 -178758564 + MIR SINE MIR 89 257 -5 336 232 43 114 chr3 39278859 39279070 -178758088 + MLT1K LTR MaLR 378 573 -15 286 237 13 13 chr3 39279169 39279245 -178757913 + GA-rich Low_complexity Low_complexity 1 76 0 379 290 62 26 chr3 39279479 39279672 -178757486 - L3 LINE CR1 -180 1397 1198 2577 247 48 9 chr3 39280600 39281330 -178755828 + L1ME1 LINE L1 5400 6154 -12 228 324 10 20 chr3 39281613 39281715 -178755443 - MLT1J LTR MaLR -374 175 75 307 237 21 54 chr3 39283387 39283480 -178753678 + MER5A DNA MER1_type 74 163 -26 202 289 96 0 chr3 39285914 39285997 -178751161 + L2 LINE L2 3214 3304 -9 234 340 31 21 chr3 39286077 39286174 -178750984 - MIR SINE MIR -65 143 46 375 157 74 66 chr3 39286875 39286996 -178750162 - LTR37B LTR ERV1 -4 464 343 322 260 21 0 chr3 39287074 39287170 -178749988 - LTR37B LTR ERV1 -167 301 204 223 137 0 83 chr3 39287282 39287450 -178749708 + (TA)n Simple_repeat Simple_repeat 2 155 0 359 124 5 77 chr3 39287524 39287718 -178749440 + (TA)n Simple_repeat Simple_repeat 1 180 0 342 67 0 0 chr3 39288428 39288473 -178748685 + (TG)n Simple_repeat Simple_repeat 1 45 0 288 289 21 10 chr3 39289275 39289372 -178747786 - MLT1J LTR MaLR -413 98 1 686 139 8 33 chr3 39289401 39289523 -178747635 - FRAM SINE Alu -26 150 32 383 333 39 39 chr3 39289561 39289795 -178747363 - MIR SINE MIR -16 246 13 1796 210 42 2 chr3 39290011 39290411 -178746747 + MER63C DNA MER1_type 87 502 -428 650 290 27 27 chr3 39290421 39290645 -178746513 + MER58A DNA MER1_type 1 224 0 1044 199 74 52 chr3 39292426 39292697 -178744461 - MLT1B LTR MaLR -110 280 4 242 200 0 129 chr3 39293272 39293342 -178743816 + L2 LINE L2 3250 3310 -3 560 260 106 34 chr3 39293529 39293971 -178743187 - HAL1b LINE L1 -249 1099 626 415 283 71 90 chr3 39294241 39294563 -178742595 - HAL1b LINE L1 -1026 322 7 836 267 37 64 chr3 39294773 39295096 -178742062 + MER21B LTR ERV1 332 645 -218 1977 200 41 91 chr3 39295096 39295655 -178741503 - LTR26E LTR ERV1 0 622 1 559 269 42 6 chr3 39295655 39295820 -178741338 + MER21B LTR ERV1 642 812 -51 2095 184 68 42 chr3 39296939 39297395 -178739763 + MLT1D LTR MaLR 38 505 0 388 275 127 48 chr3 39299829 39300269 -178736889 - MLT1K LTR MaLR -1 475 1 721 269 77 27 chr3 39300289 39300535 -178736623 + MLT1D LTR MaLR 2 260 -245 244 209 128 35 chr3 39300535 39300621 -178736537 - MER34 LTR ERV1 0 542 449 73 57 0 0 chr3 39300671 39300793 -178736365 + AT_rich Low_complexity Low_complexity 1 122 0 927 233 43 0 chr3 39302197 39302407 -178734751 + MER20 DNA MER1_type 1 219 0 265 114 0 0 chr3 39302868 39302903 -178734255 - U2 snRNA snRNA -153 35 1 181 368 75 19 chr3 39302938 39303044 -178734114 - MIR SINE MIR -81 127 16 2025 253 66 12 chr3 39303239 39303800 -178733358 + MLT1G1 LTR MaLR 5 595 0 2026 125 3 30 chr3 39304133 39304438 -178732720 + AluSx SINE Alu 1 297 -15 765 281 88 24 chr3 39305158 39306189 -178730969 + L1ME3A LINE L1 4758 5852 -318 38 0 0 0 chr3 39307373 39307411 -178729747 + AT_rich Low_complexity Low_complexity 1 38 0 767 277 59 84 chr3 39308196 39308637 -178728521 - MER110 LTR ERV1 0 468 80 29 0 0 0 chr3 39309008 39309037 -178728121 + AT_rich Low_complexity Low_complexity 1 29 0 216 293 35 0 chr3 39309239 39309297 -178727861 + MIR SINE MIR 203 262 0 226 314 0 0 chr3 39309360 39309411 -178727747 + L2 LINE L2 3212 3262 -10 263 257 0 0 chr3 39311058 39311128 -178726030 + MLT1J LTR MaLR 111 180 -331 2276 104 0 19 chr3 39311904 39312220 -178724938 + AluSg SINE Alu 1 310 0 234 333 72 0 chr3 39312463 39312574 -178724584 + MIR SINE MIR 84 202 -60 192 320 67 13 chr3 39314161 39314236 -178722922 - MIR3 SINE MIR -5 203 125 189 0 0 0 chr3 39314751 39314772 -178722386 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7044 58 8 3 chr3 39315029 39315932 -178721226 - L1PA8 LINE L1 0 6172 5266 4053 97 0 0 chr3 39315930 39316515 -178720643 + L1PA8 LINE L1 4673 5257 -889 * 22 0 0 0 chr3 39316516 39316538 -178720620 + AT_rich Low_complexity Low_complexity 1 22 0 192 309 126 97 chr3 39316953 39317222 -178719936 + L2 LINE L2 2615 2891 -423 1897 161 58 3 chr3 39317775 39318105 -178719053 + MSTC LTR MaLR 81 428 0 343 229 0 0 chr3 39318217 39318278 -178718880 + Tigger2 DNA MER2_type 1 61 -2657 239 191 103 73 chr3 39318287 39318355 -178718803 - MER2 DNA MER2_type 0 345 276 * 735 244 54 6 chr3 39318322 39318490 -178718668 - MER8 DNA MER2_type -63 176 1 210 239 0 0 chr3 39318670 39318716 -178718442 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 235 370 33 11 chr3 39319356 39319448 -178717710 - L3 LINE CR1 -104 1473 1380 4344 259 67 31 chr3 39320356 39323367 -178713791 + L1ME1 LINE L1 35 2936 -3299 1549 179 7 33 chr3 39323367 39323668 -178713490 + AluJb SINE Alu 6 298 -14 4344 259 67 31 chr3 39323668 39324603 -178712555 + L1ME1 LINE L1 2936 6187 -48 345 254 26 9 chr3 39324535 39324649 -178712509 + L1MA10 LINE L1 6280 6395 -8 * 216 152 45 0 chr3 39325399 39325465 -178711693 + (TA)n Simple_repeat Simple_repeat 2 70 0 571 196 77 36 chr3 39325713 39325907 -178711251 + L1ME3A LINE L1 5753 5954 -216 301 261 176 17 chr3 39326243 39326362 -178710796 + AluJb SINE Alu 2 139 -163 908 160 0 101 chr3 39326529 39326748 -178710410 + L1MA9 LINE L1 6078 6274 -38 300 309 39 11 chr3 39326798 39326976 -178710182 - L1ME LINE L1 -337 5784 5602 253 317 92 17 chr3 39327015 39327135 -178710023 - L1ME LINE L1 -2226 5582 5454 264 213 223 11 chr3 39327142 39327236 -178709922 + L2 LINE L2 3195 3308 -5 22 0 0 0 chr3 39327380 39327402 -178709756 + AT_rich Low_complexity Low_complexity 1 22 0 5426 34 0 0 chr3 39327421 39328060 -178709098 - L1PA5 LINE L1 -2 6152 5514 23367 78 9 0 chr3 39328060 39331155 -178706003 - L1P LINE L1 -3024 3122 1 272 377 97 39 chr3 39332291 39332821 -178704337 + L2 LINE L2 2354 2924 -390 1982 125 3 21 chr3 39332821 39333145 -178704013 - AluSx SINE Alu 0 319 1 272 377 97 39 chr3 39333145 39333202 -178703956 + L2 LINE L2 2924 2976 -338 397 212 124 44 chr3 39333607 39333720 -178703438 + MIR SINE MIR 43 164 -98 216 214 0 0 chr3 39333783 39333825 -178703333 + (TA)n Simple_repeat Simple_repeat 2 43 0 377 302 65 12 chr3 39333882 39334051 -178703107 - MLT1J LTR MaLR -317 194 17 359 287 30 0 chr3 39334057 39334158 -178703000 + MIR SINE MIR 159 262 0 320 339 8 24 chr3 39334140 39334264 -178702894 - MIR SINE MIR -101 161 40 * 1291 247 69 45 chr3 39334693 39335142 -178702016 + MLT1C LTR MaLR 8 467 0 202 403 67 8 chr3 39336040 39336174 -178700984 - L2 LINE L2 -2 3270 3129 23 97 0 0 chr3 39336759 39336831 -178700327 + AT_rich Low_complexity Low_complexity 1 72 0 14373 134 35 3 chr3 39336985 39339326 -178697832 - Tigger1 DNA MER2_type -2 2416 1 257 236 94 4 chr3 39340438 39340526 -178696632 + MIR SINE MIR 50 143 -65 207 0 0 0 chr3 39340868 39340891 -178696267 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 181 214 60 128 chr3 39341061 39341178 -178695980 + MIR SINE MIR 146 254 -8 231 309 74 78 chr3 39342366 39342609 -178694549 - L3b LINE CR1 -222 1361 1120 1416 183 0 37 chr3 39343089 39343386 -178693772 + AluJo SINE Alu 21 307 0 22 0 0 0 chr3 39343978 39344000 -178693158 + AT_rich Low_complexity Low_complexity 1 22 0 25 46 0 46 chr3 39344139 39344177 -178692981 + AT_rich Low_complexity Low_complexity 1 37 -25 2180 107 0 0 chr3 39344177 39344481 -178692677 - AluSg SINE Alu 0 304 1 25 46 0 46 chr3 39344481 39344506 -178692652 + AT_rich Low_complexity Low_complexity 37 62 0 21 0 0 0 chr3 39344990 39345011 -178692147 + AT_rich Low_complexity Low_complexity 1 21 0 309 259 35 0 chr3 39345496 39345581 -178691577 - L2 LINE L2 -2 3270 3183 2158 153 14 0 chr3 39347013 39347379 -178689779 - THE1C LTR MaLR -4 371 1 374 253 199 7 chr3 39347507 39347653 -178689505 + MER5A DNA MER1_type 14 187 -2 1336 222 65 16 chr3 39347782 39348165 -178688993 - Charlie4a DNA MER1_type -101 407 6 242 231 0 0 chr3 39348745 39348797 -178688361 + L2 LINE L2 3261 3312 -1 255 255 21 21 chr3 39349687 39349781 -178687377 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 386 207 42 136 chr3 39349813 39350026 -178687132 + L1MEd LINE L1 789 981 -5138 25 31 0 0 chr3 39350057 39350089 -178687069 + AT_rich Low_complexity Low_complexity 1 32 0 463 325 81 4 chr3 39350162 39350521 -178686637 + L1ME3 LINE L1 5255 5639 -525 476 288 164 31 chr3 39350527 39350753 -178686405 + MIR SINE MIR 3 258 -4 442 260 34 25 chr3 39350812 39350983 -178686175 + L1ME3 LINE L1 5655 5829 -333 725 250 0 13 chr3 39351005 39351161 -178685997 + MER58A DNA MER1_type 45 198 -26 47 44 0 0 chr3 39351174 39351242 -178685916 + AT_rich Low_complexity Low_complexity 1 68 0 557 261 81 19 chr3 39351461 39351622 -178685536 + MER5B DNA MER1_type 8 178 0 6417 154 16 14 chr3 39351867 39353738 -178683420 - L1MA2 LINE L1 0 6304 4432 3940 245 88 39 chr3 39353724 39355206 -178681952 - L1M4 LINE L1 -4974 1568 15 * 306 132 0 19 chr3 39356068 39356121 -178681037 + L2 LINE L2 3262 3313 0 2273 170 67 0 chr3 39357930 39358331 -178678827 + MSTA LTR MaLR 1 428 0 257 342 57 36 chr3 39358430 39358623 -178678535 + MER117 DNA MER1_type 1 197 0 7608 22 7 0 chr3 39359191 39360310 -178676848 + L1PA2 LINE L1 5030 6155 0 21 57 0 0 chr3 39360310 39360345 -178676813 + AT_rich Low_complexity Low_complexity 1 35 0 384 125 0 0 chr3 39360996 39361060 -178676098 + (TTCCC)n Simple_repeat Simple_repeat 3 66 0 271 150 20 150 chr3 39361692 39361792 -178675366 + MLT1H LTR MaLR 3 89 -460 348 273 10 0 chr3 39361997 39362096 -178675062 + MLT1H LTR MaLR 450 549 0 416 96 32 11 chr3 39362720 39362814 -178674344 + (TA)n Simple_repeat Simple_repeat 2 97 0 1416 173 22 29 chr3 39363584 39363856 -178673302 + AluJo SINE Alu 39 308 -4 786 276 43 83 chr3 39363965 39364363 -178672795 + LTR16B LTR ERVL 83 464 0 183 379 10 0 chr3 39364368 39364471 -178672687 - L2 LINE L2 -1027 2287 2184 799 237 131 0 chr3 39365278 39365476 -178671682 - MER58A DNA MER1_type 0 224 1 809 144 75 0 chr3 39366443 39366616 -178670542 + MER53 DNA DNA 3 188 -1 466 271 97 7 chr3 39366719 39366863 -178670295 - MLT1J2 LTR MaLR -7 443 287 1902 291 107 81 chr3 39367076 39368573 -178668585 - L2 LINE L2 -37 3276 1751 250 400 84 13 chr3 39368618 39368773 -178668385 - L2 LINE L2 -1 3271 3106 859 212 41 0 chr3 39369124 39369294 -178667864 + MER5A DNA MER1_type 10 186 -3 2637 163 42 12 chr3 39369626 39370124 -178667034 - L1PA16 LINE L1 -16 6150 5638 3339 122 8 2 chr3 39370126 39370628 -178666530 + L1PA14 LINE L1 5656 6160 -1 2140 99 0 10 chr3 39370627 39370939 -178666219 - L1PA16 LINE L1 -501 5665 5357 * 346 255 186 12 chr3 39371548 39371709 -178665449 - MIR SINE MIR 0 262 74 1885 115 82 75 chr3 39372325 39372752 -178664406 - MSTB1 LTR MaLR -2 430 1 235 282 235 0 chr3 39372753 39372838 -178664320 + MIR SINE MIR 110 214 -48 598 292 53 4 chr3 39373019 39373262 -178663896 - MIR SINE MIR -3 259 5 266 344 94 6 chr3 39374337 39374497 -178662661 - MIR SINE MIR -60 202 29 348 211 133 34 chr3 39374536 39374641 -178662517 + MER5A DNA MER1_type 4 134 -55 1555 191 13 20 chr3 39374641 39374940 -178662218 - AluJo SINE Alu -8 304 8 348 211 133 34 chr3 39374940 39374991 -178662167 + MER5A DNA MER1_type 134 179 -10 238 258 0 45 chr3 39376175 39376241 -178660917 - LTR50 LTR ERVL -346 449 387 2214 171 10 10 chr3 39376725 39377128 -178660030 - MER57A LTR ERV1 0 403 1 279 246 57 57 chr3 39377255 39377377 -178659781 + MER112 DNA MER1_type 30 151 -109 15363 100 39 31 chr3 39377725 39380293 -178656865 + L1PBa LINE L1 3 2589 -4274 312 27 0 0 chr3 39380424 39380461 -178656697 + (TC)n Simple_repeat Simple_repeat 1 37 0 2436 146 24 9 chr3 39380515 39380941 -178656217 + MSTB1 LTR MaLR 1 432 0 890 190 92 0 chr3 39380943 39381138 -178656020 + MER20 DNA MER1_type 7 219 0 817 152 99 7 chr3 39382395 39382546 -178654612 - MER5A DNA MER1_type -15 174 10 927 287 105 32 chr3 39382787 39383167 -178653991 - MLT1K LTR MaLR -178 410 3 23 68 0 0 chr3 39384074 39384118 -178653040 + AT_rich Low_complexity Low_complexity 1 44 0 701 332 9 29 chr3 39384716 39385056 -178652102 - LTR16C LTR ERVL -90 401 69 2316 99 23 0 chr3 39385335 39385637 -178651521 - AluSg SINE Alu -1 309 1 230 154 0 39 chr3 39386139 39386191 -178650967 - HsTC2 DNA Tc2 -1835 63 14 216 0 0 0 chr3 39386647 39386671 -178650487 + (T)n Simple_repeat Simple_repeat 1 24 0 183 306 0 0 chr3 39387889 39387938 -178649220 + MIR SINE MIR 95 143 -119 3961 173 14 9 chr3 39387991 39388770 -178648388 - L1PB4 LINE L1 -4 6152 5370 239 156 16 31 chr3 39388898 39388962 -178648196 + (TAA)n Simple_repeat Simple_repeat 1 63 0 405 0 0 0 chr3 39389225 39389270 -178647888 + (TG)n Simple_repeat Simple_repeat 1 45 0 336 133 0 0 chr3 39389273 39389333 -178647825 + (GA)n Simple_repeat Simple_repeat 1 60 0 3667 111 20 0 chr3 39389351 39389892 -178647266 + MER41A LTR ERV1 3 554 0 5154 123 44 6 chr3 39389977 39390797 -178646361 + MER41A-int LTR ERV1 1 851 -5095 4127 160 88 22 chr3 39390788 39391764 -178645394 + MER41A-int LTR ERV1 934 2220 -3726 * 12750 153 71 50 chr3 39391745 39393879 -178643279 + MER41A-int LTR ERV1 2648 4873 -1073 2025 119 33 23 chr3 39393879 39394182 -178642976 + AluSx SINE Alu 1 306 -6 12750 153 71 50 chr3 39394182 39395277 -178641881 + MER41A-int LTR ERV1 4873 5944 -2 4269 81 0 0 chr3 39395277 39395831 -178641327 + MER41A LTR ERV1 1 554 0 2187 125 0 0 chr3 39395897 39396194 -178640964 - AluSg SINE Alu -13 297 1 367 297 171 0 chr3 39396203 39396378 -178640780 - L1ME4a LINE L1 -238 5883 5679 30 69 0 0 chr3 39396711 39396769 -178640389 + AT_rich Low_complexity Low_complexity 1 58 0 314 210 32 0 chr3 39396894 39396956 -178640202 - MIR SINE MIR -103 105 42 235 148 0 131 chr3 39397560 39397621 -178639537 + L2 LINE L2 3261 3313 0 500 300 12 42 chr3 39397671 39397911 -178639247 - L2 LINE L2 -37 3276 3044 1049 237 84 3 chr3 39397914 39398260 -178638898 - Zaphod DNA AcHobo -4 4027 3654 1163 250 44 45 chr3 39398291 39398930 -178638228 - Zaphod DNA AcHobo -3030 1001 364 435 290 14 0 chr3 39398936 39399074 -178638084 - MLT1F1 LTR MaLR 0 567 428 740 270 46 8 chr3 39399177 39399418 -178637740 - MER69 DNA AcHobo -2211 315 66 325 352 99 30 chr3 39401188 39401421 -178635737 + L2 LINE L2 2825 3073 -199 395 283 66 20 chr3 39401421 39401619 -178635539 + MER106A DNA MER1_type 1 207 -29 242 360 61 0 chr3 39401772 39401886 -178635272 + L2 LINE L2 3146 3266 -6 1524 204 21 43 chr3 39402356 39402728 -178634430 + MLT1A1 LTR MaLR 1 364 -1 550 340 33 12 chr3 39402811 39403055 -178634103 - MIR SINE MIR -4 258 10 218 261 15 15 chr3 39403404 39403469 -178633689 + GA-rich Low_complexity Low_complexity 2 66 0 412 316 119 21 chr3 39404259 39404452 -178632706 + MIR SINE MIR 13 224 -38 207 0 0 0 chr3 39405041 39405064 -178632094 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 483 304 70 25 chr3 39406596 39406797 -178630361 - MIR SINE MIR -34 228 19 355 281 99 54 chr3 39408695 39409016 -178628142 + L2 LINE L2 2736 3072 -200 284 276 252 0 chr3 39409806 39409929 -178627229 + L2 LINE L2 3160 3313 0 483 363 59 17 chr3 39411092 39411329 -178625829 + MIR SINE MIR 10 256 -6 306 0 0 0 chr3 39411779 39411813 -178625345 + (CA)n Simple_repeat Simple_repeat 1 34 0 345 240 8 32 chr3 39412420 39412545 -178624613 + L1MC4 LINE L1 7920 8041 -1 22 0 0 0 chr3 39412803 39412825 -178624333 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 39412970 39412993 -178624165 + AT_rich Low_complexity Low_complexity 1 23 0 818 185 47 31 chr3 39413901 39414092 -178623066 + MIR SINE MIR 42 238 -24 543 196 30 112 chr3 39415954 39416240 -178620918 - L1MD3 LINE L1 -14 7981 6072 811 262 74 4 chr3 39416326 39416555 -178620603 + MIR SINE MIR 13 257 -5 1761 170 0 41 chr3 39417487 39417805 -178619353 - AluJo SINE Alu -7 305 1 435 253 107 65 chr3 39417904 39418410 -178618748 + L1ME4a LINE L1 5543 6069 -52 945 226 144 50 chr3 39418671 39419033 -178618125 - MLT1D LTR MaLR 0 505 110 1308 167 5 0 chr3 39419060 39419276 -178617882 - U3 snRNA snRNA 0 217 1 2150 184 52 27 chr3 39419308 39419472 -178617686 - LTR32 LTR ERVL 0 471 313 2346 102 0 3 chr3 39419472 39419777 -178617381 + AluSc SINE Alu 1 304 -5 2150 184 52 27 chr3 39419777 39420058 -178617100 - LTR32 LTR ERVL -158 313 15 412 162 0 27 chr3 39420038 39420112 -178617046 - LTR32 LTR ERVL -383 88 17 * 263 255 32 32 chr3 39420099 39420193 -178616965 - MLT1D LTR MaLR -528 98 5 * 448 215 155 84 chr3 39420467 39420718 -178616440 - LTR33 LTR ERVL -24 497 229 396 288 13 52 chr3 39420744 39420897 -178616261 - LTR33 LTR ERVL -373 148 2 870 296 60 26 chr3 39420899 39421314 -178615844 - L2 LINE L2 -1248 2066 1638 1987 185 44 22 chr3 39421577 39421987 -178615171 - MSTB1 LTR MaLR -13 419 1 409 273 32 45 chr3 39422079 39422299 -178614859 - MER113 DNA MER1_type? -304 217 1 780 224 141 42 chr3 39423422 39423833 -178613325 - MLT1C LTR MaLR 0 467 8 238 293 91 0 chr3 39424371 39424470 -178612688 - MIR SINE MIR -48 214 107 1281 187 4 4 chr3 39425798 39426076 -178611082 + L1MA4 LINE L1 6018 6295 -5 186 280 174 38 chr3 39427350 39427482 -178609676 + L2 LINE L2 3122 3271 -1 540 205 21 115 chr3 39427613 39427797 -178609361 + MER58B DNA MER1_type 173 341 0 2015 148 0 7 chr3 39428296 39428599 -178608559 - AluSx SINE Alu -11 301 1 867 283 39 18 chr3 39428768 39429047 -178608111 - MLT1I LTR MaLR -4 405 121 498 252 32 93 chr3 39429183 39429429 -178607729 - L2 LINE L2 0 3313 3083 279 358 63 29 chr3 39429414 39429621 -178607537 - L2 LINE L2 -3064 250 37 * 221 244 22 0 chr3 39430647 39430692 -178606466 - L2 LINE L2 -21 3251 3206 1027 275 25 18 chr3 39430695 39430971 -178606187 + MLT1H LTR MaLR 13 290 -259 554 292 78 7 chr3 39431238 39431392 -178605766 - MIR SINE MIR -49 213 49 347 260 105 50 chr3 39434101 39434282 -178602876 + MIR SINE MIR 66 256 -6 600 277 121 49 chr3 39435238 39435800 -178601358 + MLT1E1 LTR MaLR 1 621 -3 375 89 0 0 chr3 39435911 39435967 -178601191 + (CA)n Simple_repeat Simple_repeat 1 56 0 10843 180 10 1 chr3 39436121 39439012 -178598146 + L1PA14 LINE L1 3254 6161 0 2049 205 103 40 chr3 39439597 39440420 -178596738 + MER63C DNA MER1_type 1 930 0 24 0 0 0 chr3 39440874 39440898 -178596260 + AT_rich Low_complexity Low_complexity 1 24 0 431 286 193 32 chr3 39440999 39441656 -178595502 + HAL1b LINE L1 93 855 -493 5426 215 30 15 chr3 39441660 39443634 -178593524 + L1MC1 LINE L1 4330 6330 -3 21 57 0 0 chr3 39444285 39444320 -178592838 + AT_rich Low_complexity Low_complexity 1 35 0 527 331 14 32 chr3 39444321 39444555 -178592603 - MIR SINE MIR -31 231 2 231 281 73 0 chr3 39444654 39444736 -178592422 - MIR SINE MIR -73 189 102 229 197 16 0 chr3 39445697 39445758 -178591400 - L1ME4a LINE L1 0 6121 6060 4797 80 17 5 chr3 39445835 39446487 -178590671 - PABL_A LTR ERV1 0 660 1 449 240 107 7 chr3 39446497 39446647 -178590511 + L1ME3 LINE L1 5997 6161 -1 496 266 80 42 chr3 39447267 39447530 -178589628 - LTR16A1 LTR ERVL -40 417 145 24 0 0 0 chr3 39448621 39448645 -178588513 + AT_rich Low_complexity Low_complexity 1 24 0 375 235 106 31 chr3 39448719 39448859 -178588299 + MIR SINE MIR 41 190 -62 3919 154 7 9 chr3 39448881 39449563 -178587595 + L1PA16 LINE L1 5476 6156 -10 355 269 71 50 chr3 39450010 39450151 -178587007 + MIR3 SINE MIR 35 178 -30 413 183 140 0 chr3 39450543 39450636 -178586522 - LTR47A LTR ERVL -86 366 261 805 145 0 0 chr3 39450864 39450981 -178586177 + AluSq/x SINE Alu 1 117 -196 9926 48 3 0 chr3 39450981 39452993 -178584165 - L1PA5 LINE L1 0 6154 4137 2382 32 0 0 chr3 39452993 39453278 -178583880 + L1P LINE L1 3609 3893 -2253 491 270 12 123 chr3 39453656 39453908 -178583250 - MLT1J LTR MaLR -145 366 143 212 213 307 0 chr3 39454325 39454400 -178582758 - MER5A DNA MER1_type -88 101 4 1339 182 38 22 chr3 39454412 39454730 -178582428 + MER33 DNA MER1_type 2 324 0 488 301 26 7 chr3 39454754 39454907 -178582251 + MIR SINE MIR 53 208 -54 189 0 0 0 chr3 39457466 39457487 -178579671 + (GA)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr3 39458559 39458579 -178578579 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1251 182 45 57 chr3 39459538 39459940 -178577218 + L1ME2 LINE L1 5732 6065 -99 238 127 14 84 chr3 39459908 39459979 -178577179 - L1MC4 LINE L1 -1339 6703 6638 * 456 286 34 55 chr3 39460174 39460412 -178576746 - MIR SINE MIR -14 248 16 198 0 0 0 chr3 39461385 39461407 -178575751 + (CA)n Simple_repeat Simple_repeat 1 22 0 342 0 0 0 chr3 39461435 39461473 -178575685 + (CA)n Simple_repeat Simple_repeat 1 38 0 348 332 199 5 chr3 39462642 39462853 -178574305 + MIR SINE MIR 1 252 -10 1872 284 18 34 chr3 39464762 39465435 -178571723 + MLT2F LTR ERVL 1 662 -1 180 77 0 0 chr3 39465706 39465732 -178571426 + (TA)n Simple_repeat Simple_repeat 1 26 0 234 62 0 0 chr3 39465733 39465765 -178571393 + (TG)n Simple_repeat Simple_repeat 2 33 0 779 352 82 25 chr3 39466151 39466739 -178570419 + L3 LINE CR1 939 1559 -18 535 341 56 20 chr3 39467028 39467333 -178569825 + MER102b DNA MER1_type 26 341 0 320 258 25 33 chr3 39467420 39467540 -178569618 - LTR16C LTR ERVL 0 491 373 1099 177 32 85 chr3 39468001 39468153 -178569005 + MER58B DNA MER1_type 1 159 -2261 1037 16 8 0 chr3 39468153 39468279 -178568879 - L1PA6 LINE L1 0 6154 6028 1099 177 32 85 chr3 39468279 39468509 -178568649 + MER58B DNA MER1_type 159 341 0 342 320 39 0 chr3 39469194 39469297 -178567861 - L2 LINE L2 0 3272 3166 181 324 54 0 chr3 39470223 39470297 -178566861 + MIR3 SINE MIR 84 161 -47 27 29 0 0 chr3 39471075 39471109 -178566049 + AT_rich Low_complexity Low_complexity 1 34 0 618 330 32 5 chr3 39471604 39471792 -178565366 - MER91A DNA MER1_type -3 193 1 419 295 29 0 chr3 39473009 39473114 -178564044 - L2 LINE L2 -3 3310 3203 332 221 55 90 chr3 39473447 39473592 -178563566 - L1ME3A LINE L1 -8 6162 6023 617 203 27 27 chr3 39473962 39474110 -178563048 - L1ME3A LINE L1 -189 5981 5834 423 0 0 0 chr3 39474335 39474382 -178562776 + (TG)n Simple_repeat Simple_repeat 2 48 0 3969 205 69 85 chr3 39476113 39478135 -178559023 + L1MC4a LINE L1 5791 7808 0 937 254 72 6 chr3 39478152 39478330 -178558828 + L1ME3A LINE L1 810 975 -5421 2152 154 58 51 chr3 39478330 39478817 -178558341 + LTR2B LTR ERV1 1 490 0 937 254 72 6 chr3 39478817 39478985 -178558173 + L1ME3A LINE L1 975 1179 -5217 671 245 21 30 chr3 39479028 39479265 -178557893 + L1ME3A LINE L1 4495 4729 -1486 * 6862 28 0 0 chr3 39479257 39480076 -178557082 - L1PA3 LINE L1 -852 5294 4476 7160 20 0 1 chr3 39480076 39480906 -178556252 + L1PA3 LINE L1 5326 6155 0 31 0 0 0 chr3 39480906 39480937 -178556221 + AT_rich Low_complexity Low_complexity 1 31 0 260 216 112 9 chr3 39481026 39481142 -178556016 + L1ME3A LINE L1 5190 5317 -898 6042 210 30 24 chr3 39481185 39484552 -178552606 - L1MC1 LINE L1 0 6613 23 532 264 121 68 chr3 39485008 39485273 -178551885 - LTR33A LTR ERVL -242 281 3 378 262 77 37 chr3 39486336 39486622 -178550536 - MLT1G LTR MaLR -22 520 111 747 243 98 0 chr3 39486686 39486859 -178550299 + MER20 DNA MER1_type 30 219 0 336 274 60 17 chr3 39486859 39486971 -178550187 - MLT1G LTR MaLR -472 118 2 1458 59 134 4 chr3 39487058 39487296 -178549862 - L1MA1 LINE L1 0 6302 6034 277 344 85 67 chr3 39488114 39488445 -178548713 - L2 LINE L2 -2 3270 2934 1135 234 86 70 chr3 39489071 39489570 -178547588 + L1ME3A LINE L1 5718 6224 -15 273 346 40 0 chr3 39490398 39490499 -178546659 - Charlie8 DNA MER1_type -2310 107 3 314 295 141 26 chr3 39490500 39490656 -178546502 - MIR SINE MIR -59 203 30 22 56 0 0 chr3 39491510 39491546 -178545612 + AT_rich Low_complexity Low_complexity 1 36 0 3411 98 4 41 chr3 39492124 39492664 -178544494 - L1MA1 LINE L1 -78 6224 5705 * 14693 170 21 11 chr3 39492661 39496183 -178540975 - L1 LINE L1 -1031 6534 2977 5484 125 0 4 chr3 39496197 39497007 -178540151 - L1PA11 LINE L1 -12 6162 5356 1782 120 87 95 chr3 39497007 39497205 -178539953 - THE1B LTR MaLR 0 364 169 1945 116 0 0 chr3 39497205 39497464 -178539694 - AluSg1 SINE Alu -50 259 1 1782 120 87 95 chr3 39497464 39497632 -178539526 - THE1B LTR MaLR -195 169 1 3338 83 0 0 chr3 39497632 39498066 -178539092 - THE1B-int LTR MaLR 0 1580 1147 1712 193 66 30 chr3 39498066 39498429 -178538729 + MSTA LTR MaLR 53 428 0 10335 172 35 19 chr3 39498429 39500247 -178536911 - L1 LINE L1 -5710 1855 8 446 264 61 71 chr3 39500346 39500421 -178536737 - L1M4 LINE L1 -2301 3845 3771 18071 68 6 7 chr3 39500421 39503646 -178533512 - L1PA7 LINE L1 -3 6151 2931 446 264 61 71 chr3 39503646 39503865 -178533293 - L1M4 LINE L1 -2375 3771 3554 284 297 68 20 chr3 39503901 39504049 -178533109 + MIR SINE MIR 91 245 -17 21 0 0 0 chr3 39504154 39504175 -178532983 + AT_rich Low_complexity Low_complexity 1 21 0 236 200 60 0 chr3 39505473 39505523 -178531635 + MIR SINE MIR 95 147 -115 417 398 64 28 chr3 39506964 39507399 -178529759 - L2 LINE L2 0 3272 2822 237 357 52 29 chr3 39507518 39507728 -178529430 - L2 LINE L2 -624 2690 2476 524 351 74 27 chr3 39508037 39508434 -178528724 - L2 LINE L2 -181 3091 2670 666 252 32 76 chr3 39508494 39508744 -178528414 + Charlie8 DNA MER1_type 33 271 -2146 2309 264 144 30 chr3 39508828 39509870 -178527288 + L2 LINE L2 1529 2689 -625 583 261 72 6 chr3 39509886 39510066 -178527092 - L1MC4a LINE L1 -371 7437 7246 2020 117 18 96 chr3 39510414 39510608 -178526550 + THE1B LTR MaLR 1 151 -213 2065 127 0 0 chr3 39510608 39510935 -178526223 + AluSq SINE Alu 1 327 0 2020 117 18 96 chr3 39510935 39511134 -178526024 + THE1B LTR MaLR 151 364 0 330 321 43 63 chr3 39511138 39511440 -178525718 + LTR16C LTR ERVL 181 476 -15 186 262 226 0 chr3 39511648 39511732 -178525426 - L2 LINE L2 -1481 1833 1731 270 294 0 46 chr3 39511866 39511975 -178525183 - L2 LINE L2 -300 2972 2869 281 244 30 30 chr3 39512138 39512273 -178524885 - L1MC5 LINE L1 -319 7642 7508 2201 117 0 0 chr3 39513271 39513570 -178523588 + AluSx SINE Alu 1 299 -13 449 311 88 10 chr3 39514071 39514264 -178522894 - MLT1I LTR MaLR -7 402 195 536 219 9 9 chr3 39514277 39514391 -178522767 + FAM SINE Alu 44 157 -28 1096 83 24 0 chr3 39514405 39514519 -178522639 + (GGAAA)n Simple_repeat Simple_repeat 1 288 0 1096 83 24 0 chr3 39514519 39514687 -178522471 + (GGAAA)n Simple_repeat Simple_repeat 4 175 0 263 211 18 0 chr3 39514716 39514773 -178522385 - MLT1I LTR MaLR -232 177 120 29 0 0 0 chr3 39514903 39514932 -178522226 + AT_rich Low_complexity Low_complexity 1 29 0 1068 198 24 5 chr3 39514956 39515163 -178521995 - MER2 DNA MER2_type -134 211 1 998 261 149 36 chr3 39515271 39515600 -178521558 + LTR16C LTR ERVL 126 491 0 22 0 0 0 chr3 39517443 39517465 -178519693 + AT_rich Low_complexity Low_complexity 1 22 0 1455 191 14 3 chr3 39517499 39517781 -178519377 - L1PA15 LINE L1 -2 6163 5879 336 276 50 45 chr3 39518344 39518565 -178518593 + L1MC5 LINE L1 7687 7908 -53 686 221 82 57 chr3 39518759 39519039 -178518119 + L1MC4 LINE L1 7189 7475 -567 30 27 0 0 chr3 39519871 39519908 -178517250 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr3 39519992 39520023 -178517135 + AT_rich Low_complexity Low_complexity 1 31 0 432 344 36 32 chr3 39520267 39520520 -178516638 + L1M4 LINE L1 4024 4277 -1869 313 274 174 48 chr3 39520701 39521080 -178516078 + L1M4 LINE L1 4601 5027 -1119 32 26 0 0 chr3 39521145 39521184 -178515974 + AT_rich Low_complexity Low_complexity 1 39 0 465 331 35 98 chr3 39522493 39522864 -178514294 + L2 LINE L2 2712 3059 -213 2519 116 5 5 chr3 39522965 39523335 -178513823 + THE1C LTR MaLR 6 375 0 348 305 30 23 chr3 39523339 39523470 -178513688 + L2 LINE L2 3141 3272 0 228 215 120 95 chr3 39523515 39523673 -178513485 + L1ME4a LINE L1 5851 6012 -109 223 346 99 0 chr3 39523865 39523966 -178513192 + MIR SINE MIR 40 150 -112 21 0 0 0 chr3 39525265 39525286 -178511872 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr3 39526123 39526149 -178511009 + (T)n Simple_repeat Simple_repeat 1 26 0 7635 28 0 0 chr3 39526171 39527153 -178510005 - L1PA2 LINE L1 0 6155 5175 13337 27 0 0 chr3 39527155 39529024 -178508134 + L1PA2 LINE L1 3300 5168 -978 1650 206 34 23 chr3 39530347 39530731 -178506427 + MLT1B LTR MaLR 1 388 -2 699 337 55 24 chr3 39530847 39531262 -178505896 - L2 LINE L2 -43 3270 2843 496 327 192 15 chr3 39531370 39532434 -178504724 + L2 LINE L2 1978 3250 -63 643 313 35 10 chr3 39533046 39533356 -178503802 + L1M4 LINE L1 2387 2704 -3442 246 244 85 0 chr3 39533544 39533626 -178503532 + Charlie8 DNA MER1_type 33 121 -2296 2378 214 20 20 chr3 39533627 39534216 -178502942 - L1MA10 LINE L1 -782 5364 4776 * 4745 187 18 9 chr3 39534213 39534998 -178502160 + L1MA10 LINE L1 5376 6172 -162 249 83 0 0 chr3 39534998 39535034 -178502124 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4745 187 18 9 chr3 39535034 39535199 -178501959 + L1MA10 LINE L1 6172 6334 0 246 289 60 60 chr3 39535202 39535368 -178501790 + Charlie8 DNA MER1_type 97 262 -2155 2318 285 35 21 chr3 39535499 39536499 -178500659 - L1ME3A LINE L1 -10 6229 5216 1007 241 127 94 chr3 39536772 39537321 -178499837 - MLT1F1 LTR MaLR 0 567 2 2338 297 60 40 chr3 39537322 39537574 -178499584 - L1ME3A LINE L1 -2038 4177 3932 2460 77 0 0 chr3 39537574 39537884 -178499274 - AluY SINE Alu -1 310 1 2338 297 60 40 chr3 39537884 39539303 -178497855 - L1ME3A LINE L1 -2283 3932 2472 1820 212 45 35 chr3 39539301 39541019 -178496139 - L1MB8 LINE L1 0 6989 5065 * 2271 208 13 51 chr3 39541038 39541563 -178495595 - L1MB8 LINE L1 -6346 513 9 636 314 77 17 chr3 39541575 39542184 -178494974 - L1MEc LINE L1 -3733 2482 1877 1354 191 4 40 chr3 39542210 39542487 -178494671 + AluJo SINE Alu 29 295 -17 568 313 48 33 chr3 39542530 39543048 -178494110 - L1MEc LINE L1 -4641 1755 1230 387 224 24 102 chr3 39543073 39543203 -178493955 - MLT1G LTR MaLR 0 590 419 19169 49 1 2 chr3 39543390 39545838 -178491320 + L1P LINE L1 1176 3622 -2524 646 240 120 35 chr3 39595840 39596205 -178440953 - LTR8A LTR ERV1 -103 609 222 193 258 162 42 chr3 39597023 39597190 -178439968 - L2 LINE L2 -656 2658 2472 316 171 0 79 chr3 39597199 39597275 -178439883 + FLAM_A SINE Alu 64 133 0 400 181 21 43 chr3 39597344 39597438 -178439720 + AluJo SINE Alu 56 147 -165 245 263 237 29 chr3 39597519 39597797 -178439361 - L2 LINE L2 -936 2378 2043 6901 86 24 5 chr3 39598142 39599196 -178437962 + MER61-int LTR ERV1 2095 3168 -2049 2353 96 0 3 chr3 39600006 39600308 -178436850 - AluSx SINE Alu -11 301 1 2512 27 7 3 chr3 39600689 39600987 -178436171 + AluY SINE Alu 1 299 -12 279 203 0 0 chr3 39601036 39601100 -178436058 + CT-rich Low_complexity Low_complexity 4 67 0 186 43 0 0 chr3 39601865 39601888 -178435270 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1036 91 0 0 chr3 39601889 39602021 -178435137 - AluY SINE Alu -179 132 1 32 43 0 0 chr3 39603138 39603184 -178433974 + AT_rich Low_complexity Low_complexity 1 46 0 1713 301 146 22 chr3 39603513 39604360 -178432798 + L2 LINE L2 1957 2908 -406 777 298 109 28 chr3 39604517 39604910 -178432248 + L2 LINE L2 2889 3313 0 282 326 136 20 chr3 39605265 39605412 -178431746 - L2 LINE L2 -6 3266 3103 333 177 94 31 chr3 39605587 39605683 -178431475 - MER94 DNA DNA -9 125 24 278 193 0 12 chr3 39606816 39606899 -178430259 + (TA)n Simple_repeat Simple_repeat 1 82 0 643 186 51 17 chr3 39606902 39607020 -178430138 - FLAM_A SINE Alu -11 122 1 2729 231 56 29 chr3 39607773 39608593 -178428565 + MER21B LTR ERV1 1 842 -21 2496 43 0 7 chr3 39608769 39609069 -178428089 + AluY SINE Alu 1 298 -13 308 303 7 14 chr3 39609122 39609264 -178427894 - L1ME3A LINE L1 -213 5957 5817 318 319 30 48 chr3 39609779 39609860 -178427298 - L1MEd LINE L1 -5939 180 99 240 35 0 0 chr3 39609860 39609889 -178427269 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 319 30 48 chr3 39609889 39609914 -178427244 - L1MEd LINE L1 -6020 99 75 2313 86 6 49 chr3 39609914 39610240 -178426918 - AluSp SINE Alu -1 312 1 318 319 30 48 chr3 39610240 39610298 -178426860 - L1MEd LINE L1 -6044 75 18 21 0 0 0 chr3 39610393 39610414 -178426744 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr3 39610443 39610499 -178426659 + AT_rich Low_complexity Low_complexity 1 56 0 30 52 0 39 chr3 39610785 39610862 -178426296 + AT_rich Low_complexity Low_complexity 1 74 0 2776 177 28 16 chr3 39611285 39611866 -178425292 + L1MB5 LINE L1 5579 6166 -8 2385 58 0 7 chr3 39611868 39612161 -178424997 + AluY SINE Alu 1 291 -20 336 127 0 0 chr3 39612210 39612265 -178424893 - MER103 DNA DNA -52 114 60 1631 142 20 116 chr3 39612505 39612849 -178424309 + AluYb8 SINE Alu 1 311 -7 516 289 65 15 chr3 39613032 39613233 -178423925 - LTR16A LTR ERVL -6 444 234 25 31 0 0 chr3 39615374 39615406 -178421752 + AT_rich Low_complexity Low_complexity 1 32 0 4209 43 8 0 chr3 39615406 39615919 -178421239 - L1PA5 LINE L1 -8 6146 5630 4222 66 12 0 chr3 39615919 39616603 -178420555 + L1M1 LINE L1 4809 5497 -689 752 318 54 8 chr3 39616603 39616845 -178420313 + MIR SINE MIR 8 260 -2 213 295 16 57 chr3 39617010 39617132 -178420026 - L2 LINE L2 -511 2803 2687 196 77 51 0 chr3 39617203 39617242 -178419916 + (TG)n Simple_repeat Simple_repeat 1 41 0 855 320 59 5 chr3 39617296 39617671 -178419487 - MLT1J LTR MaLR -114 397 3 426 304 87 69 chr3 39617741 39617885 -178419273 - L2 LINE L2 -836 2478 2338 2321 73 10 7 chr3 39617885 39618185 -178418973 + AluY SINE Alu 1 301 -10 426 304 87 69 chr3 39618185 39618329 -178418829 - L2 LINE L2 -976 2338 2185 903 236 9 24 chr3 39619050 39619262 -178417896 + MER58A DNA MER1_type 15 223 -1 889 171 5 62 chr3 39620334 39620527 -178416631 + MER3 DNA MER1_type 27 208 -1 541 144 0 31 chr3 39620877 39620974 -178416184 + L1MC1 LINE L1 6231 6324 -9 183 80 0 0 chr3 39620979 39621004 -178416154 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr3 39621075 39621096 -178416062 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 39621961 39621996 -178415162 + AT_rich Low_complexity Low_complexity 1 35 0 2752 203 24 70 chr3 39622344 39622559 -178414599 + MER72 LTR ERV1 1 224 -498 2089 136 3 0 chr3 39622559 39622861 -178414297 - AluSx SINE Alu -9 303 1 2752 203 24 70 chr3 39622861 39623402 -178413756 + MER72 LTR ERV1 224 722 0 650 186 8 0 chr3 39623712 39623836 -178413322 + MLT1B LTR MaLR 1 125 -265 255 204 0 0 chr3 39623834 39623883 -178413275 + LTR28 LTR ERV1 9 57 -963 * 1781 159 28 60 chr3 39623855 39624290 -178412868 + MER61C LTR ERV1 14 434 0 1229 178 40 8 chr3 39624293 39624546 -178412612 + MLT1B LTR MaLR 127 387 -3 3233 131 103 21 chr3 39625514 39626085 -178411073 + LTR35 LTR ERV1 1 618 0 3249 133 101 21 chr3 39626846 39627418 -178409740 + LTR35 LTR ERV1 1 618 0 1519 207 141 84 chr3 39627499 39628185 -178408973 - MER50 LTR ERV1 0 734 10 2204 173 74 42 chr3 39628410 39628977 -178408181 + MER34C LTR ERV1 1 585 0 396 200 0 0 chr3 39629849 39629914 -178407244 - MER96 DNA MER1_type? 0 175 111 1004 187 28 11 chr3 39629927 39630109 -178407049 - MER58A DNA MER1_type -36 188 4 1949 133 28 0 chr3 39630413 39630699 -178406459 + AluSx SINE Alu 8 301 -11 186 315 161 35 chr3 39630822 39630965 -178406193 + L2 LINE L2 3112 3272 0 436 307 28 6 chr3 39631281 39631460 -178405698 + L1MC5 LINE L1 7744 7926 -35 182 170 0 21 chr3 39631594 39631641 -178405517 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 193 36 12 chr3 39631661 39631744 -178405414 + (TA)n Simple_repeat Simple_repeat 1 85 0 2092 134 3 13 chr3 39631795 39632108 -178405050 - AluSx SINE Alu 0 312 3 460 275 136 42 chr3 39632289 39632525 -178404633 - MIR SINE MIR 0 262 5 399 247 43 0 chr3 39632719 39632812 -178404346 - MLT1I LTR MaLR -26 383 287 587 270 16 82 chr3 39633857 39634175 -178402983 - L1MD2 LINE L1 -13 6346 6050 350 225 0 12 chr3 39634217 39634297 -178402861 - MLT1L LTR MaLR -536 79 1 2152 113 0 0 chr3 39635339 39635654 -178401504 + AluSx SINE Alu 1 315 0 1320 290 53 27 chr3 39636891 39637380 -178399778 + MLT1H1 LTR MaLR 3 589 -1 779 236 133 0 chr3 39637457 39637652 -178399506 - MIR SINE MIR -25 237 17 1877 161 24 0 chr3 39637815 39638113 -178399045 + AluJo SINE Alu 1 305 -7 300 27 0 0 chr3 39638622 39638659 -178398499 + (TG)n Simple_repeat Simple_repeat 2 38 0 251 212 91 40 chr3 39638798 39638897 -178398261 - MLT1L LTR MaLR -4 611 508 191 313 61 61 chr3 39639758 39639857 -178397301 + MER5A DNA MER1_type 14 112 -77 * 228 256 47 101 chr3 39639784 39639913 -178397245 - MER5A DNA MER1_type -22 167 46 2167 73 7 18 chr3 39639915 39640236 -178396922 + AluY SINE Alu 1 318 0 23 0 0 0 chr3 39640336 39640359 -178396799 + AT_rich Low_complexity Low_complexity 1 23 0 434 267 106 81 chr3 39642050 39642372 -178394786 + MER102a DNA MER1_type 1 330 0 1853 253 30 24 chr3 39642767 39643262 -178393896 + LTR31 LTR ERV1 106 603 -16 471 305 14 7 chr3 39643406 39643547 -178393611 + MER97b DNA MER1_type? 2 143 -910 3208 239 21 14 chr3 39643548 39644306 -178392852 + L1MA1 LINE L1 15 777 -6788 * 15449 161 20 11 chr3 39644305 39650233 -178386925 + L1MA1 LINE L1 1731 7716 -5 24 0 0 0 chr3 39650234 39650258 -178386900 + AT_rich Low_complexity Low_complexity 1 24 0 506 197 0 63 chr3 39650258 39650385 -178386773 + MER97a DNA MER1_type? 131 249 -645 462 36 0 0 chr3 39650387 39650443 -178386715 + (TG)n Simple_repeat Simple_repeat 2 57 0 1434 241 45 9 chr3 39650447 39650779 -178386379 - MSTD LTR MaLR -12 384 41 778 266 5 41 chr3 39650782 39651000 -178386158 - MLT-int LTR MaLR -981 754 545 769 263 33 5 chr3 39650993 39651206 -178385952 - MSTD-int LTR MaLR -1515 220 2 * 1865 202 39 21 chr3 39651206 39651588 -178385570 - MSTD LTR MaLR -2 394 6 1341 227 71 6 chr3 39651593 39651946 -178385212 + MER97c DNA MER1_type? 244 619 -471 24 0 0 0 chr3 39652345 39652369 -178384789 + AT_rich Low_complexity Low_complexity 1 24 0 259 266 39 31 chr3 39652382 39652510 -178384648 + MER97c DNA MER1_type? 953 1081 -9 21 57 0 0 chr3 39653147 39653182 -178383976 + AT_rich Low_complexity Low_complexity 1 35 0 209 265 61 20 chr3 39653431 39653529 -178383629 + MIR SINE MIR 96 197 -65 310 252 81 49 chr3 39654549 39654672 -178382486 + MIR SINE MIR 14 140 -122 351 183 0 0 chr3 39654679 39654750 -178382408 + MER72 LTR ERV1 1 71 -651 333 252 81 49 chr3 39654843 39654966 -178382192 + MIR SINE MIR 14 140 -122 2869 200 21 65 chr3 39654973 39655728 -178381430 + MER72 LTR ERV1 1 722 0 1695 274 51 26 chr3 39655780 39656309 -178380849 - MLT1G LTR MaLR 0 590 49 401 297 38 32 chr3 39656420 39656605 -178380553 - MIR SINE MIR -30 232 47 1538 199 40 0 chr3 39656613 39656889 -178380269 + AluJo SINE Alu 1 287 -25 206 32 32 0 chr3 39656898 39656929 -178380229 + (CAA)n Simple_repeat Simple_repeat 1 32 0 376 214 62 27 chr3 39657418 39657530 -178379628 + MLT1L LTR MaLR 165 280 -335 1933 118 42 0 chr3 39657549 39657836 -178379322 - AluSx SINE Alu -12 300 2 1026 248 114 43 chr3 39657984 39658404 -178378754 + LTR16A1 LTR ERVL 8 457 0 1024 221 69 0 chr3 39659001 39659304 -178377854 + MER33 DNA MER1_type 1 324 0 718 254 91 35 chr3 39659406 39659857 -178377301 + Charlie7 DNA MER1_type 675 1223 -1389 367 278 208 43 chr3 39659983 39660238 -178376920 + MLT1J LTR MaLR 92 388 -123 202 150 75 0 chr3 39661233 39661273 -178375885 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 456 255 70 66 chr3 39661730 39661989 -178375169 - MLT1K LTR MaLR 0 588 329 231 281 61 0 chr3 39662555 39662637 -178374521 - MLT1L LTR MaLR -197 418 332 577 140 18 9 chr3 39662658 39662772 -178374386 + L1MC3 LINE L1 7669 7783 -2 262 257 134 89 chr3 39662853 39663032 -178374126 - MLT1L LTR MaLR -361 254 68 222 215 77 0 chr3 39663134 39663199 -178373959 + MIR SINE MIR 191 260 -2 278 315 34 72 chr3 39663343 39663578 -178373580 - L2 LINE L2 -785 2529 2304 204 294 0 0 chr3 39663665 39663716 -178373442 - L2 LINE L2 0 3313 3263 250 211 18 0 chr3 39664068 39664125 -178373033 + (TA)n Simple_repeat Simple_repeat 1 58 0 3450 194 18 14 chr3 39664214 39664979 -178372179 - L1MD1 LINE L1 0 6636 5869 23 0 0 0 chr3 39664983 39665006 -178372152 + AT_rich Low_complexity Low_complexity 1 23 0 2242 64 7 20 chr3 39665009 39665304 -178371854 - AluY SINE Alu -20 291 1 2069 136 60 16 chr3 39665305 39665687 -178371471 - L1MA9 LINE L1 0 6312 5914 1526 164 20 24 chr3 39665688 39665858 -178371300 + L1MA9 LINE L1 5612 5782 -530 387 0 0 0 chr3 39665858 39665901 -178371257 + (CA)n Simple_repeat Simple_repeat 2 44 0 1526 164 20 24 chr3 39665901 39666023 -178371135 + L1MA9 LINE L1 5782 5903 -409 8363 239 74 26 chr3 39666032 39666551 -178370607 - L1MD1 LINE L1 -743 5797 5305 324 48 0 0 chr3 39666551 39666593 -178370565 + (TG)n Simple_repeat Simple_repeat 1 42 0 8363 239 74 26 chr3 39666593 39667318 -178369840 - L1MD1 LINE L1 -1235 5305 4617 360 0 0 0 chr3 39667318 39667358 -178369800 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8363 239 74 26 chr3 39667358 39667947 -178369211 - L1MD1 LINE L1 -1923 4617 4058 2512 44 14 0 chr3 39667947 39668244 -178368914 - AluY SINE Alu -10 301 1 8363 239 74 26 chr3 39668244 39671985 -178365173 - L1MD1 LINE L1 -2482 4058 17 199 333 30 0 chr3 39672003 39672069 -178365089 - MIR SINE MIR -136 126 59 2355 100 3 0 chr3 39672225 39672534 -178364624 + AluSx SINE Alu 1 310 -2 388 241 12 0 chr3 39673181 39673264 -178363894 + MIR SINE MIR 71 154 -108 233 318 182 0 chr3 39675575 39675685 -178361473 - L2 LINE L2 -6 3266 3137 581 259 129 43 chr3 39675707 39675939 -178361219 + MIR SINE MIR 2 253 -9 569 219 66 141 chr3 39676702 39676881 -178360277 - MLT1H1 LTR MaLR -185 370 179 2059 122 16 3 chr3 39676881 39677184 -178359974 - AluY SINE Alu -4 307 1 569 219 66 141 chr3 39677184 39677202 -178359956 - MLT1H1 LTR MaLR -376 179 161 741 187 8 15 chr3 39677202 39677336 -178359822 - FLAM_A SINE Alu 0 133 1 569 219 66 141 chr3 39677336 39677484 -178359674 - MLT1H1 LTR MaLR -394 161 50 2329 106 0 0 chr3 39677973 39678275 -178358883 - AluSg SINE Alu -8 302 1 563 189 0 0 chr3 39678662 39678757 -178358401 - MER34 LTR ERV1 -447 95 1 567 248 30 8 chr3 39678806 39678939 -178358219 + MIR SINE MIR 21 156 -106 239 236 18 0 chr3 39678939 39678994 -178358164 + L1ME4a LINE L1 5973 6028 -93 1761 179 0 40 chr3 39680107 39680432 -178356726 - AluJo SINE Alu 0 312 1 360 236 73 79 chr3 39681010 39681175 -178355983 - L2 LINE L2 0 3313 3150 277 285 102 77 chr3 39681433 39681707 -178355451 - L2 LINE L2 -481 2833 2553 442 246 98 0 chr3 39682102 39682224 -178354934 + MER94 DNA DNA 1 134 0 352 274 197 17 chr3 39682499 39682616 -178354542 + MER5A DNA MER1_type 46 183 -6 270 220 51 59 chr3 39682625 39682815 -178354343 + MER112 DNA MER1_type 22 248 -12 406 79 26 0 chr3 39684382 39684458 -178352700 + (TA)n Simple_repeat Simple_repeat 2 79 0 2479 48 7 0 chr3 39684529 39684819 -178352339 - AluSc SINE Alu -17 292 1 320 231 50 99 chr3 39684873 39684994 -178352164 + MIR3 SINE MIR 82 196 -12 288 221 74 53 chr3 39686692 39686787 -178350371 - L2 LINE L2 -9 3263 3167 623 290 59 15 chr3 39687123 39687353 -178349805 + MIR SINE MIR 9 256 -6 412 345 36 7 chr3 39687504 39687643 -178349515 + L2 LINE L2 2944 3086 -186 185 139 28 28 chr3 39688085 39688121 -178349037 - L2 LINE L2 -501 2813 2778 226 306 149 0 chr3 39688742 39688863 -178348295 - MIR SINE MIR -4 258 120 189 107 0 0 chr3 39689714 39689742 -178347416 + (T)n Simple_repeat Simple_repeat 1 28 0 1272 275 65 84 chr3 39689814 39690491 -178346667 + MER115 DNA AcHobo 30 693 0 225 94 0 0 chr3 39690685 39690717 -178346441 + (T)n Simple_repeat Simple_repeat 1 32 0 525 322 130 0 chr3 39691201 39691431 -178345727 - MIR SINE MIR -1 261 2 367 228 9 53 chr3 39691807 39691921 -178345237 + MER69 DNA AcHobo 4 112 -1114 * 2229 163 84 46 chr3 39691904 39692329 -178344829 + MER69 DNA AcHobo 1938 2390 -136 1325 209 47 57 chr3 39692329 39692625 -178344533 - AluJo SINE Alu -9 293 1 2229 163 84 46 chr3 39692625 39692759 -178344399 + MER69 DNA AcHobo 2390 2518 -8 219 273 82 45 chr3 39693093 39693203 -178343955 + MIR3 SINE MIR 82 195 -13 22 0 0 0 chr3 39694114 39694136 -178343022 + AT_rich Low_complexity Low_complexity 1 22 0 397 256 192 0 chr3 39694358 39694483 -178342675 + MER5A DNA MER1_type 41 189 0 2339 98 0 25 chr3 39694800 39695118 -178342040 - AluSg SINE Alu 0 310 1 2415 57 0 0 chr3 39696489 39696794 -178340364 + AluY SINE Alu 1 305 0 2194 134 0 0 chr3 39697859 39698164 -178338994 - AluSq SINE Alu -8 305 1 2346 100 0 0 chr3 39699189 39699490 -178337668 + AluSg SINE Alu 7 307 -3 357 280 43 0 chr3 39699732 39699825 -178337333 - MIR SINE MIR -76 186 90 2318 105 0 3 chr3 39700443 39700749 -178336409 + AluSx SINE Alu 1 305 -7 2399 87 0 0 chr3 39700919 39701218 -178335940 + AluSc SINE Alu 1 299 -10 671 246 18 18 chr3 39702551 39702722 -178334436 - MER5B DNA MER1_type -6 172 2 226 328 64 16 chr3 39702723 39702848 -178334310 - MIR3 SINE MIR -48 160 30 721 207 132 0 chr3 39703650 39703824 -178333334 + MER3 DNA MER1_type 1 197 -12 464 268 246 43 chr3 39704189 39704518 -178332640 - L2 LINE L2 -10 3303 2908 1165 172 91 118 chr3 39705148 39705520 -178331638 + MLT1A1 LTR MaLR 1 362 -3 2191 122 0 3 chr3 39705564 39705867 -178331291 - AluSc SINE Alu -7 302 1 219 69 0 0 chr3 39706142 39706171 -178330987 + (T)n Simple_repeat Simple_repeat 1 29 0 278 261 43 22 chr3 39706279 39706371 -178330787 - MIR3 SINE MIR -21 187 94 264 345 124 0 chr3 39707316 39707429 -178329729 - MIR SINE MIR -121 141 15 332 338 71 0 chr3 39707708 39707862 -178329296 + MIR SINE MIR 94 258 -4 677 269 65 37 chr3 39708068 39708362 -178328796 - MER102a DNA MER1_type -6 324 23 204 150 25 0 chr3 39709863 39709903 -178327255 + A-rich Low_complexity Low_complexity 2 42 0 186 171 0 0 chr3 39710402 39710443 -178326715 + (CA)n Simple_repeat Simple_repeat 1 41 0 206 235 0 39 chr3 39710522 39710573 -178326585 + L2 LINE L2 3172 3220 -93 420 20 0 0 chr3 39710680 39710729 -178326429 + (TG)n Simple_repeat Simple_repeat 2 50 0 300 53 0 0 chr3 39710731 39710769 -178326389 - Alu SINE Alu -264 38 1 270 81 0 0 chr3 39711251 39711288 -178325870 + (TG)n Simple_repeat Simple_repeat 2 38 0 2509 75 0 0 chr3 39711311 39711617 -178325541 + AluY SINE Alu 1 306 -5 755 307 110 26 chr3 39711631 39711644 -178325514 - L1MC4a LINE L1 -1884 5924 5914 1128 270 97 41 chr3 39711644 39712137 -178325021 - LTR33 LTR ERVL 0 521 1 755 307 110 26 chr3 39712137 39712615 -178324543 - L1MC4a LINE L1 -1894 5914 5392 1730 157 75 3 chr3 39713764 39714057 -178323101 + MLT2C1 LTR ERVL 1 314 -83 2221 144 12 6 chr3 39714916 39715257 -178321901 + MER2 DNA MER2_type 1 343 -1 260 219 0 14 chr3 39716384 39716457 -178320701 + CT-rich Low_complexity Low_complexity 4 75 0 926 191 17 23 chr3 39716902 39717075 -178320083 + MER5B DNA MER1_type 5 176 -2 423 275 67 8 chr3 39718178 39718298 -178318860 - L2 LINE L2 0 3313 3187 204 232 29 72 chr3 39718562 39718631 -178318527 + L2 LINE L2 3203 3268 -4 2239 121 0 0 chr3 39720016 39720314 -178316844 - AluSx SINE Alu -14 298 1 207 0 0 0 chr3 39720348 39720371 -178316787 + (TC)n Simple_repeat Simple_repeat 1 23 0 895 334 101 5 chr3 39720842 39721276 -178315882 + L3 LINE CR1 1077 1552 -25 502 297 138 25 chr3 39721596 39721993 -178315165 + LTR16A1 LTR ERVL 16 457 0 270 0 0 0 chr3 39722090 39722120 -178315038 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 28 48 0 0 chr3 39722180 39722222 -178314936 + AT_rich Low_complexity Low_complexity 1 42 0 2024 113 0 7 chr3 39722222 39722506 -178314652 - AluSg SINE Alu -28 282 1 387 0 0 0 chr3 39722949 39722992 -178314166 + (CA)n Simple_repeat Simple_repeat 2 44 0 983 175 73 6 chr3 39725234 39725411 -178311747 + MER5A DNA MER1_type 1 189 0 210 174 0 0 chr3 39725922 39725968 -178311190 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 386 307 101 26 chr3 39726137 39726326 -178310832 - L1MC/D LINE L1 -2051 5757 5555 2159 123 10 0 chr3 39726763 39727063 -178310095 - AluSx SINE Alu -9 303 1 2376 110 0 0 chr3 39727780 39728081 -178309077 - AluSx SINE Alu -11 301 1 532 335 20 5 chr3 39728319 39728522 -178308636 - MIR SINE MIR 0 262 57 185 207 0 17 chr3 39728560 39728618 -178308540 + CT-rich Low_complexity Low_complexity 4 60 0 668 292 96 5 chr3 39729483 39729692 -178307466 + MIR SINE MIR 1 228 -34 273 209 116 0 chr3 39730250 39730336 -178306822 + MIR SINE MIR 145 240 -22 459 228 215 0 chr3 39730423 39730572 -178306586 + MER5A DNA MER1_type 9 189 0 201 308 26 13 chr3 39731564 39731642 -178305516 - MIR3 SINE MIR -54 154 76 591 280 102 22 chr3 39731960 39732185 -178304973 + MIR SINE MIR 16 258 -4 945 185 56 0 chr3 39732517 39732695 -178304463 - MER58A DNA MER1_type 0 224 37 189 74 0 0 chr3 39732922 39732949 -178304209 + (TTG)n Simple_repeat Simple_repeat 1 27 0 759 201 52 35 chr3 39734835 39735009 -178302149 - MER5B DNA MER1_type -1 177 1 318 348 93 42 chr3 39735982 39736390 -178300768 + L3 LINE CR1 712 1140 -437 210 374 34 39 chr3 39736505 39736711 -178300447 + L3 LINE CR1 1178 1382 -195 181 298 160 11 chr3 39736819 39736913 -178300245 + L3 LINE CR1 1455 1562 -15 477 230 191 7 chr3 39737436 39737588 -178299570 - MER5A DNA MER1_type -7 182 3 201 214 0 36 chr3 39737730 39737786 -178299372 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 289 247 201 41 chr3 39737787 39738011 -178299147 - L1MC4 LINE L1 -163 7674 7390 455 303 20 50 chr3 39738172 39738370 -178298788 + L1ME3A LINE L1 5962 6153 -17 1653 164 8 4 chr3 39738541 39738803 -178298355 - AluJo SINE Alu -39 273 11 258 288 36 36 chr3 39739896 39740007 -178297151 + MIR SINE MIR 120 230 -32 1118 189 51 18 chr3 39740301 39740700 -178296458 - Charlie4a DNA MER1_type -18 490 7 1443 151 50 47 chr3 39741187 39741465 -178295693 - AluJo SINE Alu -33 279 1 604 260 33 54 chr3 39741519 39741761 -178295397 + MIR SINE MIR 9 245 -17 976 195 73 24 chr3 39742457 39742662 -178294496 - MER58C DNA MER1_type 0 215 1 242 321 9 47 chr3 39742707 39742813 -178294345 - L2 LINE L2 -2 3270 3169 1454 181 35 3 chr3 39743525 39743813 -178293345 + AluSg SINE Alu 1 297 -13 4792 107 10 3 chr3 39743824 39744432 -178292726 - LTR9 LTR ERV1 0 612 1 187 296 0 0 chr3 39744907 39744961 -178292197 + L2 LINE L2 3258 3311 -2 183 240 240 13 chr3 39745596 39745671 -178291487 + L2 LINE L2 3168 3259 -13 234 303 172 14 chr3 39745674 39745819 -178291339 - L2 LINE L2 -5 3267 3100 204 361 76 8 chr3 39745917 39746036 -178291122 - L2 LINE L2 -266 3047 2921 2229 110 7 0 chr3 39749923 39750214 -178286944 - AluSg SINE Alu -17 293 1 2871 242 52 36 chr3 39750231 39751144 -178286014 - L1MC4a LINE L1 0 7808 6882 2468 70 0 3 chr3 39752796 39753098 -178284060 + AluY SINE Alu 2 302 -9 391 223 36 27 chr3 39754138 39754250 -178282908 - MIR SINE MIR -41 221 109 2047 98 0 0 chr3 39754388 39754652 -178282506 + AluSg1 SINE Alu 14 277 -32 370 269 77 104 chr3 39754935 39755195 -178281963 - L2 LINE L2 0 3313 3061 189 0 0 0 chr3 39755690 39755711 -178281447 + (A)n Simple_repeat Simple_repeat 1 21 0 1073 204 133 18 chr3 39756326 39756605 -178280553 - LTR16C LTR ERVL 0 491 181 315 191 59 15 chr3 39757606 39757674 -178279484 + MIR3 SINE MIR 110 180 -28 341 296 72 3 chr3 39757780 39758027 -178279131 + MER5C DNA MER1_type 1 323 -1 1395 260 56 40 chr3 39759942 39760392 -178276766 - LTR16A1 LTR ERVL 0 457 1 284 260 32 84 chr3 39760679 39760833 -178276325 - L2 LINE L2 -8 3305 3160 255 61 0 0 chr3 39761433 39761466 -178275692 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 262 335 55 66 chr3 39761466 39761723 -178275435 - L2 LINE L2 -13 3259 3006 244 185 0 62 chr3 39761845 39761910 -178275248 - MER106A DNA MER1_type 0 236 176 794 184 22 0 chr3 39761916 39762052 -178275106 - FLAM_C SINE Alu -3 140 2 1891 167 50 30 chr3 39762092 39762493 -178274665 - L1MB3 LINE L1 -2 6181 5773 594 190 25 0 chr3 39762495 39762616 -178274542 - MER106A DNA MER1_type -112 124 1 263 250 174 11 chr3 39762626 39762718 -178274440 + L2 LINE L2 3158 3264 -8 2188 161 17 27 chr3 39765172 39765582 -178271576 + L1MC1 LINE L1 5908 6313 -20 246 125 0 0 chr3 39766439 39766487 -178270671 + (TA)n Simple_repeat Simple_repeat 1 48 0 289 241 121 0 chr3 39767287 39767370 -178269788 + Charlie8 DNA MER1_type 46 138 -2279 225 0 0 0 chr3 39768781 39768806 -178268352 + (A)n Simple_repeat Simple_repeat 1 25 0 1292 159 9 40 chr3 39769286 39769512 -178267646 - MER20 DNA MER1_type 0 219 1 460 181 12 0 chr3 39769600 39769683 -178267475 + MIR SINE MIR 61 144 -118 340 293 120 0 chr3 39769983 39770116 -178267042 - MIR SINE MIR -73 189 41 632 238 153 15 chr3 39770687 39770889 -178266269 - MIR SINE MIR -2 260 31 203 147 0 0 chr3 39771781 39771815 -178265343 + (TC)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr3 39771815 39771854 -178265304 + (CA)n Simple_repeat Simple_repeat 2 40 0 700 288 60 26 chr3 39772025 39772258 -178264900 + MIR SINE MIR 6 246 -16 219 269 97 21 chr3 39772751 39772844 -178264314 - MIR SINE MIR -76 186 87 181 404 0 0 chr3 39773060 39773117 -178264041 - L2 LINE L2 -93 3179 3123 674 212 8 8 chr3 39773327 39773459 -178263699 - MLT1D LTR MaLR -1 466 335 734 219 44 44 chr3 39773462 39773645 -178263513 - MLT1D LTR MaLR -322 183 1 203 258 0 97 chr3 39774158 39774220 -178262938 + MIR SINE MIR 43 98 -110 1171 255 94 61 chr3 39774231 39774740 -178262418 - MLT1H1 LTR MaLR -29 526 1 181 277 145 12 chr3 39774743 39774826 -178262332 + MIR3 SINE MIR 103 196 -12 224 163 20 0 chr3 39774995 39775044 -178262114 + (TG)n Simple_repeat Simple_repeat 1 50 0 645 235 86 23 chr3 39776138 39776358 -178260800 + MER46C DNA MER2_type 1 234 -104 294 186 107 0 chr3 39776358 39776431 -178260727 + LTR48B LTR ERV1 1 43 -601 619 217 50 23 chr3 39776441 39776713 -178260445 + LTR48 LTR ERV1 186 619 -168 293 53 26 0 chr3 39776706 39776744 -178260414 - MER4D LTR ERV1 -38 865 827 * 4346 152 25 51 chr3 39776745 39777580 -178259578 - MER4D LTR ERV1 -50 853 41 437 244 47 47 chr3 39777580 39777707 -178259451 + LTR8 LTR ERV1 1 127 -564 * 1820 192 66 70 chr3 39777700 39778200 -178258958 + LTR8A LTR ERV1 230 727 0 785 140 51 73 chr3 39778244 39778422 -178258736 + LTR48 LTR ERV1 602 775 -12 216 0 0 0 chr3 39778519 39778543 -178258615 + (TA)n Simple_repeat Simple_repeat 2 25 0 591 143 45 9 chr3 39778590 39778702 -178258456 - MER34B LTR ERV1 -3 562 447 441 223 77 46 chr3 39778706 39778836 -178258322 + LTR39 LTR ERV1 565 698 -85 * 2291 140 71 15 chr3 39778833 39779241 -178257917 - MER34C LTR ERV1 -123 462 32 4169 193 38 7 chr3 39779969 39780724 -178256434 + LTR39 LTR ERV1 1 779 -4 3431 114 47 8 chr3 39780724 39781213 -178255945 + MER9 LTR ERVK 1 511 0 2567 152 28 21 chr3 39781504 39781933 -178255225 + MSTB1 LTR MaLR 1 432 0 1322 182 89 34 chr3 39782889 39783308 -178253850 + MER39B LTR ERV1 1 553 -154 1888 198 77 81 chr3 39783308 39783864 -178253294 - MLT2B3 LTR ERVL 0 554 1 1322 182 89 34 chr3 39783864 39784029 -178253129 + MER39B LTR ERV1 553 707 0 243 243 167 33 chr3 39784085 39784271 -178252887 - L1M4 LINE L1 -448 5736 5523 1370 237 116 15 chr3 39784453 39784858 -178252300 - MER39 LTR ERV1 0 707 262 460 212 73 58 chr3 39784832 39784969 -178252189 - MER39 LTR ERV1 -568 139 1 * 1348 208 39 48 chr3 39785064 39785420 -178251738 - MER39 LTR ERV1 -30 677 325 24 32 0 0 chr3 39786087 39786118 -178251040 + AT_rich Low_complexity Low_complexity 1 31 0 306 290 65 18 chr3 39786379 39786593 -178250565 - L1ME1 LINE L1 -233 5929 5705 492 195 25 17 chr3 39786898 39787016 -178250142 + L1ME LINE L1 4639 4757 -1389 225 146 42 0 chr3 39787021 39787069 -178250089 + L1ME LINE L1 4811 4860 -1286 869 155 5 77 chr3 39787105 39787160 -178249998 - MER67C LTR ERV1 -20 690 633 2018 139 3 13 chr3 39787160 39787469 -178249689 + AluSx SINE Alu 1 306 -6 869 155 5 77 chr3 39787469 39787620 -178249538 - MER67C LTR ERV1 -77 633 499 862 234 88 36 chr3 39787621 39787985 -178249173 - MER67C LTR ERV1 -324 386 4 1397 210 56 17 chr3 39787994 39788540 -178248618 + L1ME LINE L1 4869 5437 -725 6558 183 37 20 chr3 39788548 39788763 -178248395 + L1M4c LINE L1 21 231 -6153 2178 147 0 12 chr3 39788763 39789104 -178248054 + MER1B DNA MER1_type 1 337 0 6558 183 37 20 chr3 39789104 39790219 -178246939 + L1M4c LINE L1 231 1373 -5011 1381 219 121 14 chr3 39790216 39790430 -178246728 + L1MD3 LINE L1 6887 7077 -918 * 2198 102 0 20 chr3 39790430 39790735 -178246423 + AluSg SINE Alu 1 299 -11 1381 219 121 14 chr3 39790735 39790876 -178246282 + L1MD3 LINE L1 7077 7280 -715 340 197 14 0 chr3 39790877 39790948 -178246210 + MLT1F1 LTR MaLR 3 74 -493 672 161 0 8 chr3 39790951 39791069 -178246089 + L1MD3 LINE L1 7374 7490 -505 2282 229 16 63 chr3 39791090 39791710 -178245448 - L1MEc LINE L1 -5754 642 52 23 54 0 0 chr3 39791855 39791892 -178245266 + AT_rich Low_complexity Low_complexity 1 37 0 2122 86 0 4 chr3 39794620 39794887 -178242271 + AluY SINE Alu 1 266 -45 23 33 0 0 chr3 39795165 39795195 -178241963 + AT_rich Low_complexity Low_complexity 1 30 0 229 350 29 44 chr3 39795286 39795423 -178241735 - L2 LINE L2 -213 3059 2925 266 183 0 99 chr3 39795672 39795743 -178241415 + MER110A LTR ERV1 102 165 -303 574 271 127 0 chr3 39795795 39796016 -178241142 + MER110 LTR ERV1 148 396 -95 990 298 57 51 chr3 39796102 39796608 -178240550 - L2 LINE L2 -554 2760 2252 783 295 45 8 chr3 39796854 39797098 -178240060 + MIR SINE MIR 7 259 -3 233 254 31 77 chr3 39798229 39798359 -178238799 + MLT1J LTR MaLR 238 361 -150 960 285 100 21 chr3 39798442 39798831 -178238327 + LTR16C LTR ERVL 71 490 -1 2429 299 70 17 chr3 39799168 39800484 -178236674 + L2 LINE L2 1921 3313 0 216 0 0 0 chr3 39801020 39801044 -178236114 + (CA)n Simple_repeat Simple_repeat 2 25 0 318 253 22 22 chr3 39801603 39801694 -178235464 - L1MC4 LINE L1 -1334 6708 6618 302 311 0 19 chr3 39801620 39801726 -178235432 + L1MC4 LINE L1 6615 6718 -1324 * 306 125 0 0 chr3 39801930 39801978 -178235180 + (TA)n Simple_repeat Simple_repeat 1 48 0 1196 147 5 11 chr3 39802247 39802437 -178234721 - MER5A DNA MER1_type 0 189 1 407 286 112 0 chr3 39803088 39803249 -178233909 - MIR SINE MIR 0 262 84 24 67 0 0 chr3 39805213 39805258 -178231900 + AT_rich Low_complexity Low_complexity 1 45 0 210 368 0 0 chr3 39805353 39805429 -178231729 + (TG)n Simple_repeat Simple_repeat 2 77 0 1590 173 66 0 chr3 39807313 39807585 -178229573 + AluSx SINE Alu 1 290 -22 940 178 157 4 chr3 39807599 39807835 -178229323 - MER5C DNA MER1_type -1 323 52 587 81 12 0 chr3 39808115 39808201 -178228957 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 208 156 0 22 chr3 39808206 39808251 -178228907 + CT-rich Low_complexity Low_complexity 2 45 0 1365 203 81 12 chr3 39809890 39810225 -178226933 + L1ME1 LINE L1 5686 6043 -123 455 262 33 0 chr3 39810666 39810788 -178226370 - MER94 DNA DNA 0 134 9 334 271 119 13 chr3 39810854 39811005 -178226153 + MIR SINE MIR 81 247 -15 24 53 0 0 chr3 39811012 39811050 -178226108 + AT_rich Low_complexity Low_complexity 1 38 0 219 330 37 18 chr3 39811637 39811746 -178225412 + MER5A DNA MER1_type 69 179 -10 402 321 52 24 chr3 39812754 39812966 -178224192 + MER20 DNA MER1_type 1 218 -1 1136 209 40 8 chr3 39815270 39815523 -178221635 - MLT1B LTR MaLR -3 387 127 1929 159 28 60 chr3 39815526 39815961 -178221197 - MER61C LTR ERV1 0 434 14 275 226 0 0 chr3 39815933 39815986 -178221172 - LTR28 LTR ERV1 -963 57 5 * 690 186 8 0 chr3 39815980 39816104 -178221054 - MLT1B LTR MaLR -265 125 1 2767 203 24 70 chr3 39816414 39816955 -178220203 - MER72 LTR ERV1 0 722 224 2063 136 3 0 chr3 39816955 39817257 -178219901 + AluSx SINE Alu 1 303 -9 2767 203 24 70 chr3 39817257 39817472 -178219686 - MER72 LTR ERV1 -498 224 1 22 0 0 0 chr3 39817773 39817795 -178219363 + AT_rich Low_complexity Low_complexity 1 22 0 268 231 5 22 chr3 39819148 39819282 -178217876 - L1M LINE L1 -765 5381 5255 505 131 46 19 chr3 39819350 39819609 -178217549 + (TA)n Simple_repeat Simple_repeat 1 266 0 28 0 0 0 chr3 39819632 39819660 -178217498 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 39819660 39819689 -178217469 + (TG)n Simple_repeat Simple_repeat 2 30 0 388 337 124 8 chr3 39819756 39820023 -178217135 - L1 LINE L1 -1112 5034 4737 1397 249 159 25 chr3 39820235 39820744 -178216414 + MLT1G LTR MaLR 14 590 0 25 0 0 0 chr3 39820824 39820849 -178216309 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 39822195 39822216 -178214942 + AT_rich Low_complexity Low_complexity 1 21 0 785 216 59 40 chr3 39822309 39822531 -178214627 + MLT1I LTR MaLR 137 362 -47 1695 170 0 11 chr3 39822923 39823200 -178213958 + AluJo SINE Alu 26 299 -13 846 200 53 6 chr3 39823200 39823370 -178213788 - MER58A DNA MER1_type -29 195 18 229 282 200 9 chr3 39823511 39823621 -178213537 + MIR SINE MIR 119 249 -13 258 193 0 0 chr3 39824396 39824453 -178212705 + C-rich Low_complexity Low_complexity 5 61 0 1626 172 19 16 chr3 39824453 39824761 -178212397 - AluSx SINE Alu -3 309 1 210 370 7 44 chr3 39824776 39824911 -178212247 + MER5A DNA MER1_type 56 185 -4 194 271 71 14 chr3 39825644 39825714 -178211444 + L2 LINE L2 108 181 -3133 195 42 0 0 chr3 39826076 39826100 -178211058 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 328 250 23 0 chr3 39828730 39828818 -178208340 - MER94 DNA DNA -41 93 4 271 240 55 144 chr3 39829647 39829959 -178207199 + MER51C LTR ERV1 329 612 -28 26 0 0 0 chr3 39831453 39831479 -178205679 + AT_rich Low_complexity Low_complexity 1 26 0 299 237 0 0 chr3 39834164 39834223 -178202935 + L2 LINE L2 3255 3313 0 261 329 86 14 chr3 39834722 39834862 -178202296 + MIR SINE MIR 98 247 -15 1195 240 55 44 chr3 39834886 39835270 -178201888 + MLT1H LTR MaLR 1 388 -161 231 281 170 33 chr3 39836400 39836553 -178200605 - MIR SINE MIR -10 252 79 361 194 0 74 chr3 39836982 39837090 -178200068 + MIR SINE MIR 152 251 -11 201 62 94 0 chr3 39840374 39840406 -178196752 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 3234 108 98 10 chr3 39840947 39841541 -178195617 - L1MA1 LINE L1 0 6302 5657 673 163 78 114 chr3 39841625 39841685 -178195473 - Tigger5 DNA MER2_type -3 2320 2259 2085 101 0 18 chr3 39841685 39841971 -178195187 + AluY SINE Alu 1 281 -30 673 163 78 114 chr3 39841971 39842155 -178195003 - Tigger5 DNA MER2_type -64 2259 2085 251 182 73 18 chr3 39844155 39844210 -178192948 + L2 LINE L2 3244 3301 -12 811 181 21 0 chr3 39845112 39845256 -178191902 + MER45A DNA AcHobo 1 147 -31 730 244 29 6 chr3 39845873 39846045 -178191113 + MER45A DNA AcHobo 1 176 -2 348 357 61 24 chr3 39846051 39846264 -178190894 - MIR SINE MIR -40 222 2 676 261 5 48 chr3 39846566 39846773 -178190385 - MIR SINE MIR 0 262 65 312 296 108 17 chr3 39846848 39847024 -178190134 + L1ME LINE L1 4640 4831 -1315 306 333 63 48 chr3 39847076 39847328 -178189830 + L1ME LINE L1 4918 5173 -973 326 201 132 42 chr3 39847755 39847899 -178189259 + L1ME LINE L1 5624 5780 -341 255 238 16 16 chr3 39848102 39848165 -178188993 + GA-rich Low_complexity Low_complexity 2 64 0 637 238 21 96 chr3 39849515 39849796 -178187362 + MER102a DNA MER1_type 68 327 -3 2102 126 0 3 chr3 39852161 39852454 -178184704 + AluSg SINE Alu 1 292 -18 444 286 196 8 chr3 39853233 39853488 -178183670 - L1ME LINE L1 -335 5786 5484 1517 305 86 19 chr3 39853657 39854391 -178182767 + MER20B DNA MER1_type 1 783 0 1800 121 53 7 chr3 39855381 39855662 -178181496 + AluSx SINE Alu 1 294 -18 363 305 140 74 chr3 39856349 39856743 -178180415 + L2 LINE L2 2842 3261 -11 183 313 30 121 chr3 39858383 39858549 -178178609 - MER5A DNA MER1_type -4 185 35 315 65 0 0 chr3 39859125 39859171 -178177987 - MADE1 DNA Mariner -34 46 1 785 265 44 116 chr3 39859314 39860136 -178177022 + LTR41 LTR ERVL 1 763 -10 285 336 50 17 chr3 39860840 39860959 -178176199 + L3 LINE CR1 255 377 -1200 198 293 53 13 chr3 39861021 39861096 -178176062 + L3 LINE CR1 804 881 -696 407 294 131 32 chr3 39861179 39861400 -178175758 + MIR SINE MIR 20 262 0 276 348 107 0 chr3 39861442 39861554 -178175604 + L3 LINE CR1 1028 1151 -426 536 331 163 27 chr3 39861633 39862486 -178174672 - L2 LINE L2 -443 2871 1903 449 283 113 25 chr3 39862577 39862736 -178174422 + L3 LINE CR1 1385 1557 -20 221 136 0 45 chr3 39863102 39863146 -178174012 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 525 290 91 100 chr3 39863929 39864668 -178172490 + L2 LINE L2 2590 3309 -4 2115 113 36 0 chr3 39864683 39864984 -178172174 - AluSp SINE Alu -1 312 1 216 0 0 0 chr3 39866091 39866115 -178171043 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1780 115 59 0 chr3 39866230 39866516 -178170642 + L1PA10 LINE L1 5866 6168 0 288 307 14 7 chr3 39866772 39866912 -178170246 + L1MC4a LINE L1 5590 5730 -391 241 259 0 0 chr3 39867465 39867550 -178169608 + L1M2 LINE L1 5348 5432 -868 12373 142 60 11 chr3 39867555 39869854 -178167304 - Tigger1 DNA MER2_type -1 2417 6 303 295 121 36 chr3 39870117 39870283 -178166875 + L1MC4a LINE L1 5721 5900 -1908 1098 161 21 5 chr3 39870988 39871181 -178165977 - MER1B DNA MER1_type -101 196 1 236 250 0 56 chr3 39871366 39871438 -178165720 - L2 LINE L2 -4 3309 3242 253 371 95 53 chr3 39871580 39871863 -178165295 - L2 LINE L2 -1 3271 2977 223 331 22 63 chr3 39872047 39872223 -178164935 + MIR SINE MIR 25 197 -56 2018 117 0 11 chr3 39872847 39873130 -178164028 + AluSx SINE Alu 1 280 -32 229 338 13 0 chr3 39873222 39873299 -178163859 + GA-rich Low_complexity Low_complexity 5 82 0 2220 107 0 7 chr3 39873314 39873612 -178163546 + AluSx SINE Alu 1 296 -16 274 190 0 0 chr3 39875483 39875541 -178161617 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 505 235 28 116 chr3 39876675 39876917 -178160241 + MER112 DNA MER1_type 1 216 -44 315 261 56 67 chr3 39876917 39877097 -178160061 + MER5B DNA MER1_type 1 178 0 505 235 28 116 chr3 39877097 39877139 -178160019 + MER112 DNA MER1_type 216 260 0 2140 153 49 0 chr3 39877460 39877807 -178159351 - THE1B LTR MaLR 0 364 1 231 339 9 18 chr3 39878014 39878126 -178159032 + GA-rich Low_complexity Low_complexity 1 111 0 380 338 55 46 chr3 39879198 39879435 -178157723 - MIR SINE MIR -11 251 13 916 233 40 0 chr3 39879575 39879777 -178157381 - MER58A DNA MER1_type -12 212 3 1653 122 0 13 chr3 39879909 39880138 -178157020 + AluSg/x SINE Alu 73 298 -14 619 289 16 11 chr3 39881017 39881207 -178155951 + MIR SINE MIR 14 204 -58 254 268 33 98 chr3 39881355 39881508 -178155650 - L2 LINE L2 -189 3083 2941 2274 110 10 0 chr3 39881692 39882001 -178155157 - AluSx SINE Alu 0 312 1 2493 122 8 3 chr3 39882867 39883229 -178153929 + THE1B LTR MaLR 1 364 0 1848 174 3 14 chr3 39883453 39883747 -178153411 + AluJb SINE Alu 1 291 -21 393 287 77 35 chr3 39883857 39884000 -178153158 - MLT1L LTR MaLR -221 394 246 290 206 96 0 chr3 39884084 39884157 -178153001 - MLT1L LTR MaLR -531 84 5 492 242 0 23 chr3 39884166 39884294 -178152864 + MER103 DNA DNA 42 166 0 484 254 159 48 chr3 39886529 39886718 -178150440 - MER63A DNA MER1_type 0 210 1 606 360 100 18 chr3 39887496 39887996 -178149162 + MLT1K LTR MaLR 38 578 -10 482 328 27 55 chr3 39888094 39888387 -178148771 + MLT1H LTR MaLR 38 322 -227 668 270 144 0 chr3 39888574 39888788 -178148370 - MIR SINE MIR 0 262 25 216 61 20 41 chr3 39888799 39888848 -178148310 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 26 0 0 0 chr3 39888969 39888995 -178148163 + AT_rich Low_complexity Low_complexity 1 26 0 2076 112 25 34 chr3 39889401 39889759 -178147399 - THE1A LTR MaLR 0 355 1 11120 96 30 4 chr3 39889759 39891298 -178145860 - THE1A-int LTR MaLR 0 1580 1 2195 109 26 11 chr3 39891300 39891648 -178145510 - THE1A LTR MaLR -2 353 1 211 286 0 0 chr3 39891838 39891887 -178145271 + L2 LINE L2 3219 3267 -5 411 68 0 0 chr3 39891955 39892014 -178145144 + (CA)n Simple_repeat Simple_repeat 2 60 0 249 33 0 0 chr3 39892013 39892043 -178145115 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 1425 214 30 3 chr3 39893188 39893483 -178143675 + AluJb SINE Alu 1 303 -9 327 264 43 68 chr3 39894466 39894629 -178142529 - MLT1K LTR MaLR -52 536 378 769 182 43 32 chr3 39895970 39896157 -178141001 - MER53 DNA DNA 0 189 1 23 0 0 0 chr3 39897133 39897156 -178140002 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 39897965 39897997 -178139161 + AT_rich Low_complexity Low_complexity 1 32 0 5639 30 0 10 chr3 39898065 39898743 -178138415 + L1PA3 LINE L1 5485 6155 0 402 216 131 57 chr3 39898761 39898937 -178138221 + L1MC5 LINE L1 7725 7913 -48 612 299 99 30 chr3 39901269 39901874 -178135284 + L1MEd LINE L1 970 1676 -4634 874 260 86 35 chr3 39901884 39902338 -178134820 + L1ME3A LINE L1 5679 6155 -15 1804 124 4 7 chr3 39903058 39903333 -178133825 + L1PA8 LINE L1 5879 6152 -20 397 264 82 89 chr3 39907159 39907439 -178129719 - L2 LINE L2 -52 3261 2984 1101 221 213 22 chr3 39907499 39907856 -178129302 + MER39 LTR ERV1 260 684 -23 1114 355 101 29 chr3 39907857 39908778 -178128380 + L2 LINE L2 1980 2966 -348 262 318 83 32 chr3 39908828 39909045 -178128113 - MLT1L LTR MaLR -10 605 378 290 273 45 64 chr3 39909322 39909432 -178127726 + L2 LINE L2 3171 3278 -35 211 277 36 24 chr3 39910043 39910126 -178127032 + MIR SINE MIR 42 125 -83 190 267 0 0 chr3 39911963 39912008 -178125150 - L2 LINE L2 -89 3224 3180 282 327 115 19 chr3 39912441 39912597 -178124561 - MIR SINE MIR -43 219 49 285 272 62 0 chr3 39912960 39913041 -178124117 + MER96 DNA MER1_type? 5 90 -85 206 304 0 14 chr3 39913923 39913992 -178123166 - MIR SINE MIR 0 262 195 27 29 0 0 chr3 39915642 39915676 -178121482 + AT_rich Low_complexity Low_complexity 1 34 0 344 280 140 20 chr3 39915945 39916095 -178121063 - MIR3 SINE MIR -6 202 35 1329 222 64 124 chr3 39918857 39919877 -178117281 + L1MC5 LINE L1 6946 7903 -58 243 200 20 0 chr3 39919942 39919992 -178117166 + GA-rich Low_complexity Low_complexity 3 53 0 189 0 0 0 chr3 39920223 39920244 -178116914 + (A)n Simple_repeat Simple_repeat 1 21 0 2095 114 0 7 chr3 39920659 39920956 -178116202 - AluSg SINE Alu -15 295 1 678 289 22 26 chr3 39922013 39922241 -178114917 + MIR SINE MIR 7 233 -29 975 274 31 42 chr3 39926252 39926609 -178110549 + MLT1H LTR MaLR 2 354 -195 553 238 40 8 chr3 39926754 39926880 -178110278 - MIR SINE MIR -122 140 11 207 0 0 0 chr3 39926937 39926960 -178110198 + (TG)n Simple_repeat Simple_repeat 2 24 0 1110 295 45 26 chr3 39928894 39929318 -178107840 + LTR16A LTR ERVL 19 450 0 2135 125 3 0 chr3 39929633 39929921 -178107237 + AluSg1 SINE Alu 1 289 -20 965 330 127 43 chr3 39930272 39930613 -178106545 + L2 LINE L2 1783 2094 -1219 610 276 0 17 chr3 39930613 39930794 -178106364 - MER5B DNA MER1_type 0 178 1 965 330 127 43 chr3 39930794 39931815 -178105343 + L2 LINE L2 2094 3264 -49 1201 242 47 22 chr3 39932199 39932563 -178104595 + L1ME3 LINE L1 5790 6162 0 193 417 18 41 chr3 39934603 39934821 -178102337 - L2 LINE L2 -84 3188 2976 1243 283 73 28 chr3 39934987 39935631 -178101527 + L2 LINE L2 2636 3313 0 1113 316 147 27 chr3 39935639 39936642 -178100516 - L2 LINE L2 -482 2832 1710 863 214 83 42 chr3 39936734 39937070 -178100088 + L1ME1 LINE L1 5807 6156 -10 229 405 30 15 chr3 39937668 39937799 -178099359 + L2 LINE L2 3139 3271 -1 21 0 0 0 chr3 39937883 39937904 -178099254 + AT_rich Low_complexity Low_complexity 1 21 0 758 240 120 14 chr3 39938184 39938392 -178098766 + MIR SINE MIR 13 242 -20 261 118 0 0 chr3 39940428 39940479 -178096679 + (CA)n Simple_repeat Simple_repeat 1 51 0 844 280 64 57 chr3 39942167 39942685 -178094473 + L2 LINE L2 2521 3165 -148 198 0 0 0 chr3 39942685 39942707 -178094451 + (TA)n Simple_repeat Simple_repeat 2 23 0 844 280 64 57 chr3 39942707 39942857 -178094301 + L2 LINE L2 3165 3312 -1 317 224 26 0 chr3 39943458 39943534 -178093624 + MIR SINE MIR 180 257 -5 1920 157 0 3 chr3 39943578 39943864 -178093294 + AluSx SINE Alu 3 287 -25 295 277 64 0 chr3 39944395 39944489 -178092669 + MIR SINE MIR 42 141 -67 336 102 0 0 chr3 39944821 39944870 -178092288 + (TA)n Simple_repeat Simple_repeat 1 49 0 594 177 126 69 chr3 39944876 39945051 -178092107 - MIR SINE MIR -20 242 58 310 328 228 16 chr3 39945567 39945817 -178091341 - L3 LINE CR1 -289 1288 986 489 295 106 32 chr3 39945833 39946050 -178091108 + MIR SINE MIR 28 260 -2 290 286 75 53 chr3 39946044 39946177 -178090981 - L3 LINE CR1 -577 1000 865 * 21 0 0 0 chr3 39946420 39946441 -178090717 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 39947023 39947044 -178090114 + AT_rich Low_complexity Low_complexity 1 21 0 224 246 31 15 chr3 39947355 39947420 -178089738 - L2 LINE L2 -188 3084 3019 1305 316 92 27 chr3 39947430 39948311 -178088847 - L2 LINE L2 0 3313 2374 342 0 0 0 chr3 39948443 39948481 -178088677 + (TG)n Simple_repeat Simple_repeat 2 39 0 200 283 172 29 chr3 39948524 39948768 -178088390 - L2 LINE L2 -446 2868 2590 909 250 22 71 chr3 39950610 39950878 -178086280 - MIR SINE MIR 0 262 8 242 330 21 0 chr3 39952085 39952182 -178084976 - MIR SINE MIR 0 262 164 465 287 112 53 chr3 39952331 39952725 -178084433 - MLT1H LTR MaLR -125 424 8 286 296 112 0 chr3 39953141 39953239 -178083919 + MLT2E LTR ERVL 120 228 -400 736 265 31 14 chr3 39953294 39953517 -178083641 + MLT2E LTR ERVL 362 588 -40 646 299 27 5 chr3 39953527 39953714 -178083444 - MIR SINE MIR -61 201 11 353 222 0 0 chr3 39953775 39953847 -178083311 + MER63 DNA MER1_type 672 743 -93 768 313 25 28 chr3 39954009 39954329 -178082829 + LTR16C LTR ERVL 53 371 -120 447 262 73 68 chr3 39954401 39954607 -178082551 - MIR SINE MIR -3 259 53 3077 221 46 10 chr3 39955568 39957074 -178080084 - L1MB2 LINE L1 -88 6083 4526 28 29 0 0 chr3 39957877 39957912 -178079246 + AT_rich Low_complexity Low_complexity 1 35 0 1151 114 29 48 chr3 39957949 39958048 -178079110 - MER2 DNA MER2_type -139 206 107 2532 108 11 3 chr3 39958048 39958409 -178078749 + THE1B LTR MaLR 1 364 0 1151 114 29 48 chr3 39958409 39958519 -178078639 - MER2 DNA MER2_type -238 107 1 242 239 68 17 chr3 39958522 39958639 -178078519 + L1MB8 LINE L1 6056 6178 0 252 216 144 45 chr3 39960317 39960428 -178076730 - MIR SINE MIR -21 241 120 49 18 0 0 chr3 39961218 39961274 -178075884 + AT_rich Low_complexity Low_complexity 1 56 0 742 205 0 0 chr3 39961274 39961401 -178075757 - AluJb SINE Alu -185 127 1 348 219 56 124 chr3 39962442 39962620 -178074538 - MIR SINE MIR -45 217 52 2318 138 60 29 chr3 39962736 39963149 -178074009 + MSTC LTR MaLR 1 426 -2 235 182 164 36 chr3 39963190 39963300 -178073858 + L1MC5 LINE L1 7407 7530 -431 1180 208 14 1 chr3 39963388 39963700 -178073458 + MER2 DNA MER2_type 1 345 0 286 225 58 75 chr3 39963708 39963828 -178073330 + L1ME3 LINE L1 5965 6082 -80 1248 121 261 75 chr3 39964523 39964830 -178072328 - THE1B LTR MaLR 0 364 1 401 273 94 47 chr3 39965760 39965888 -178071270 - L2 LINE L2 -5 3267 3134 340 250 172 0 chr3 39966354 39966470 -178070688 - MIR SINE MIR -25 237 102 270 0 0 0 chr3 39966527 39966557 -178070601 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 24 0 0 0 chr3 39967139 39967163 -178069995 + AT_rich Low_complexity Low_complexity 1 24 0 2240 95 7 7 chr3 39968345 39968650 -178068508 - AluSx SINE Alu -7 305 1 1627 133 101 3 chr3 39968757 39969073 -178068085 - L1MA6 LINE L1 -2 6298 5952 288 263 11 53 chr3 39969815 39969910 -178067248 - MIR SINE MIR -12 250 160 198 0 0 0 chr3 39970742 39970764 -178066394 + (TG)n Simple_repeat Simple_repeat 1 22 0 5962 138 60 41 chr3 39971505 39972023 -178065135 - Tigger3b DNA MER2_type -1797 1231 725 2257 76 7 10 chr3 39972023 39972312 -178064846 + AluY SINE Alu 1 288 -23 5962 138 60 41 chr3 39972312 39973000 -178064158 - Tigger3b DNA MER2_type -2303 725 1 456 340 98 9 chr3 39973567 39973782 -178063376 - MIR SINE MIR -27 235 2 2229 113 0 0 chr3 39973985 39974277 -178062881 + AluSc SINE Alu 1 292 -17 495 0 0 0 chr3 39975297 39975352 -178061806 + (TG)n Simple_repeat Simple_repeat 1 55 0 250 254 32 0 chr3 39975368 39975431 -178061727 - MLT1L LTR MaLR -550 65 1 575 95 0 21 chr3 39976118 39976213 -178060945 - L1PA7 LINE L1 0 6154 6062 242 313 203 2 chr3 39976476 39976669 -178060489 - MIR SINE MIR -25 237 5 196 293 241 0 chr3 39976852 39976968 -178060190 - L2 LINE L2 -3 3269 3126 454 331 128 3 chr3 39977086 39977382 -178059776 - MLT1I LTR MaLR -7 402 70 649 225 75 40 chr3 39977538 39977738 -178059420 + MIR SINE MIR 47 253 -9 259 299 127 64 chr3 39977748 39978214 -178058944 - L2 LINE L2 -275 3038 2547 363 283 18 9 chr3 39978904 39979017 -178058141 + MER5C DNA MER1_type 4 117 -207 919 196 50 0 chr3 39979017 39979216 -178057942 - MER20 DNA MER1_type -10 209 1 375 177 257 17 chr3 39979217 39979392 -178057766 + MER5C DNA MER1_type 108 324 0 453 259 125 28 chr3 39979739 39979955 -178057203 + Charlie8 DNA MER1_type 2 238 -2179 329 328 165 53 chr3 39980535 39981803 -178055355 - L2 LINE L2 -15 3257 1781 3801 122 51 8 chr3 39981803 39982412 -178054746 - MER41B LTR ERV1 0 635 1 329 328 165 53 chr3 39982412 39982605 -178054553 - L2 LINE L2 -1491 1781 1611 230 309 27 40 chr3 39982732 39982881 -178054277 + MER5A DNA MER1_type 7 153 -36 946 256 14 5 chr3 39982920 39983139 -178054019 + MIR SINE MIR 31 251 -11 283 331 22 36 chr3 39983173 39983312 -178053846 - MER5A DNA MER1_type -1 188 52 2462 71 0 0 chr3 39983536 39983830 -178053328 - AluY SINE Alu -17 294 1 497 288 79 22 chr3 39984576 39984805 -178052353 + Charlie8 DNA MER1_type 3 244 -2173 522 269 54 0 chr3 39984809 39984939 -178052219 + MIR SINE MIR 104 240 -22 235 235 62 62 chr3 39984936 39985017 -178052141 + Charlie8 DNA MER1_type 1348 1428 -989 * 1178 293 65 18 chr3 39985500 39985992 -178051166 + LTR33 LTR ERVL 5 519 -2 747 224 36 49 chr3 39986448 39986671 -178050487 + MER33 DNA MER1_type 8 227 -97 337 316 65 0 chr3 39987405 39987544 -178049614 + MIR SINE MIR 105 252 -10 2119 189 64 35 chr3 39987798 39988280 -178048878 - MLT1D LTR MaLR 0 505 10 231 209 0 0 chr3 39988470 39988513 -178048645 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 293 280 152 56 chr3 39988514 39988639 -178048519 - L2 LINE L2 0 3272 3136 434 186 9 200 chr3 39988844 39988985 -178048173 - MER5B DNA MER1_type 0 178 12 2511 62 13 0 chr3 39988985 39989291 -178047867 - AluY SINE Alu -1 310 1 434 186 9 200 chr3 39989291 39989328 -178047830 - MER5B DNA MER1_type -166 12 46 1724 176 7 13 chr3 39989328 39989634 -178047524 - AluJb SINE Alu -8 304 1 434 186 9 200 chr3 39989634 39989674 -178047484 - MER5B DNA MER1_type -131 47 1 421 236 76 37 chr3 39989991 39990180 -178046978 + MIR SINE MIR 49 241 -21 276 263 8 4 chr3 39990307 39990412 -178046746 + MLT1H LTR MaLR 24 169 -380 2067 165 52 10 chr3 39990414 39990821 -178046337 + L1MA3 LINE L1 5869 6292 -13 598 271 99 73 chr3 39990841 39991266 -178045892 + MLT1H1 LTR MaLR 114 549 -6 331 248 136 30 chr3 39991363 39991561 -178045597 - MLT1F LTR MaLR -323 219 1 533 142 61 101 chr3 39992158 39992306 -178044852 - L1MC2 LINE L1 -9 6335 6194 999 163 0 6 chr3 39992310 39992470 -178044688 + AluJo SINE Alu 23 181 -131 1017 158 0 0 chr3 39992478 39992630 -178044528 + AluJo SINE Alu 157 308 -4 751 236 55 10 chr3 39992635 39992834 -178044324 - L1MC2 LINE L1 -125 6219 6012 239 138 92 62 chr3 39992838 39992903 -178044255 + HsTC2 DNA Tc2 25 91 -1807 202 200 0 43 chr3 39992920 39992990 -178044168 + CT-rich Low_complexity Low_complexity 3 69 0 489 278 116 68 chr3 39993222 39993264 -178043894 + MLT1L LTR MaLR 42 81 -534 886 286 116 37 chr3 39993264 39993747 -178043411 + LTR33 LTR ERVL 1 521 0 489 278 116 68 chr3 39993747 39994057 -178043101 + MLT1L LTR MaLR 81 411 -204 327 238 49 0 chr3 39994673 39994770 -178042388 - MIR SINE MIR -61 201 100 1687 170 69 7 chr3 39995177 39995512 -178041646 + MER47B DNA MER2_type 1 418 0 1861 187 124 134 chr3 39995868 39996818 -178040340 + LTR1B LTR ERV1 1 1020 0 576 342 42 0 chr3 39997022 39997262 -178039896 - MIR SINE MIR -12 250 1 43 20 0 0 chr3 39997427 39997477 -178039681 + AT_rich Low_complexity Low_complexity 1 50 0 1179 243 89 40 chr3 39997742 39998146 -178039012 - MLT1H LTR MaLR 0 549 126 24 32 0 0 chr3 39998263 39998294 -178038864 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 39998308 39998331 -178038827 + AT_rich Low_complexity Low_complexity 1 23 0 2469 44 40 0 chr3 39999130 39999427 -178037731 + AluY SINE Alu 1 309 -2 226 293 303 7 chr3 39999928 40000215 -178036943 + L3 LINE CR1 432 803 -774 596 259 28 75 chr3 40000240 40000431 -178036727 + L1MC5 LINE L1 7522 7690 -271 1575 185 14 14 chr3 40000431 40000717 -178036441 + AluJo SINE Alu 3 288 -24 596 259 28 75 chr3 40000717 40000884 -178036274 + L1MC5 LINE L1 7690 7863 -98 367 197 0 0 chr3 40000940 40001001 -178036157 + MLT1A1 LTR MaLR 117 177 -188 283 291 191 9 chr3 40001907 40002017 -178035141 - MIR3 SINE MIR -41 167 38 724 307 92 28 chr3 40002138 40002529 -178034629 + LTR33A LTR ERVL 99 514 -9 27 49 0 0 chr3 40002962 40003003 -178034155 + AT_rich Low_complexity Low_complexity 1 41 0 252 244 53 26 chr3 40003009 40003143 -178034015 + L1MDa LINE L1 2492 2637 -3903 240 315 27 13 chr3 40003155 40003304 -178033854 + L1M4 LINE L1 4418 4568 -1578 2073 134 0 0 chr3 40003650 40003957 -178033201 - AluSx SINE Alu 0 307 1 1589 115 133 44 chr3 40004294 40004564 -178032594 + AluSg SINE Alu 1 294 -16 561 344 113 26 chr3 40004639 40005133 -178032025 + HAL1b LINE L1 72 608 -740 7229 68 16 6 chr3 40005353 40006455 -178030703 + L1PA8 LINE L1 5059 6170 -2 2689 129 2 15 chr3 40007666 40008060 -178029098 - MLT1B LTR MaLR -1 389 1 350 281 96 22 chr3 40008277 40008589 -178028569 - L1MC4a LINE L1 -401 5720 5593 2419 102 0 3 chr3 40008605 40008918 -178028240 - AluSx SINE Alu 0 312 1 257 250 38 38 chr3 40008918 40008998 -178028160 - L1MC4a LINE L1 -553 5617 5538 204 361 115 0 chr3 40009007 40009129 -178028029 - MIR SINE MIR -113 149 14 921 185 12 0 chr3 40010442 40010615 -178026543 - FRAM SINE Alu -5 171 1 247 326 152 0 chr3 40010659 40010791 -178026367 - MIR SINE MIR -108 154 3 293 311 61 34 chr3 40010876 40011024 -178026134 + MER117 DNA MER1_type 46 197 0 186 43 0 0 chr3 40011270 40011293 -178025865 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6127 156 18 17 chr3 40011293 40013205 -178023953 - L1PB1 LINE L1 -10 6857 4951 18029 139 45 2 chr3 40013315 40016768 -178020390 - L1PB1 LINE L1 -3265 3597 1 1539 203 0 23 chr3 40016981 40017286 -178019872 - AluJo SINE Alu -8 304 7 1734 169 54 0 chr3 40017308 40017604 -178019554 - AluSx SINE Alu 0 312 1 906 173 0 13 chr3 40018019 40018169 -178018989 + FRAM SINE Alu 6 153 -23 261 0 0 0 chr3 40018449 40018478 -178018680 + (A)n Simple_repeat Simple_repeat 1 29 0 639 267 27 59 chr3 40018505 40018726 -178018432 + LTR16A1 LTR ERVL 197 410 -47 826 182 44 11 chr3 40019217 40019398 -178017760 + LTR41 LTR ERVL 1 187 -586 370 324 46 12 chr3 40020270 40020441 -178016717 - MIR SINE MIR -45 217 38 206 280 196 60 chr3 40021109 40021441 -178015717 + L2 LINE L2 2882 3258 -14 685 303 53 0 chr3 40021698 40021942 -178015216 - MIR SINE MIR 0 262 6 4424 133 38 6 chr3 40022050 40022764 -178014394 + L1PB4 LINE L1 5418 6154 -2 669 340 77 46 chr3 40023611 40023999 -178013159 + L3 LINE CR1 412 811 -766 474 325 34 19 chr3 40024283 40024489 -178012669 - MIR SINE MIR 0 262 54 195 299 106 82 chr3 40024579 40024786 -178012372 + L3 LINE CR1 1077 1288 -289 379 243 89 42 chr3 40024799 40024965 -178012193 - MLT1G1 LTR MaLR 0 555 370 1202 215 73 63 chr3 40024965 40025361 -178011797 - MER39 LTR ERV1 -1 706 307 240 237 0 34 chr3 40025344 40025403 -178011755 - MER34 LTR ERV1 -419 123 67 * 647 263 26 78 chr3 40025502 40025772 -178011386 - MLT1G1 LTR MaLR -339 256 1 198 289 74 30 chr3 40025773 40025908 -178011250 + L3 LINE CR1 1246 1386 -191 22 56 0 0 chr3 40026108 40026144 -178011014 + AT_rich Low_complexity Low_complexity 1 36 0 306 281 12 12 chr3 40027603 40027685 -178009473 - MIR3 SINE MIR -9 199 118 2051 140 7 0 chr3 40028016 40028309 -178008849 + AluSx SINE Alu 3 297 -15 505 242 146 42 chr3 40028647 40028812 -178008346 + MER5A DNA MER1_type 8 189 0 483 285 97 5 chr3 40029076 40029262 -178007896 - MIR SINE MIR -1 261 59 422 294 53 12 chr3 40029295 40029465 -178007693 + MER5A DNA MER1_type 7 183 -6 501 274 8 0 chr3 40029552 40029676 -178007482 - MER94 DNA DNA 0 134 10 27 0 0 0 chr3 40030621 40030648 -178006510 + AT_rich Low_complexity Low_complexity 1 27 0 1271 246 172 22 chr3 40030653 40031063 -178006095 + MLT2B1 LTR ERVL 1 485 -35 222 62 0 0 chr3 40031063 40031095 -178006063 + (CA)n Simple_repeat Simple_repeat 1 32 0 1271 246 172 22 chr3 40031095 40031132 -178006026 + MLT2B1 LTR ERVL 485 515 -5 294 308 19 39 chr3 40031336 40031440 -178005718 + LTR67 LTR ERVL 99 200 -357 260 232 58 0 chr3 40031715 40031784 -178005374 + LTR67 LTR ERVL 485 557 0 2685 112 13 16 chr3 40031967 40032343 -178004815 - THE1C LTR MaLR 0 375 1 2129 143 47 52 chr3 40032683 40033048 -178004110 - THE1B LTR MaLR 0 364 2 10953 86 60 3 chr3 40033049 40034536 -178002622 - THE1B-int LTR MaLR -6 1574 3 2320 125 48 20 chr3 40034540 40034893 -178002265 - THE1B LTR MaLR -1 363 1 572 195 231 12 chr3 40035018 40035065 -178002093 + MIR SINE MIR 2 37 -225 2628 161 29 0 chr3 40035065 40035481 -178001677 - MSTA LTR MaLR 0 428 1 572 195 231 12 chr3 40035481 40035602 -178001556 + MIR SINE MIR 37 207 -55 719 257 71 0 chr3 40035615 40035798 -178001360 - MER3 DNA MER1_type 0 209 14 636 188 6 12 chr3 40035974 40036139 -178001019 + CT-rich Low_complexity Low_complexity 1 164 0 195 281 115 52 chr3 40037002 40037098 -178000060 + MIR SINE MIR 6 107 -155 381 293 87 48 chr3 40037202 40037431 -177999727 + MLT1H LTR MaLR 116 353 -196 414 289 26 0 chr3 40039027 40039141 -177998017 + HAL1 LINE L1 776 892 -1615 567 229 63 93 chr3 40039191 40039396 -177997762 - MLT1J LTR MaLR -213 298 100 285 146 0 0 chr3 40039472 40039520 -177997638 + (CA)n Simple_repeat Simple_repeat 1 48 0 2090 258 140 24 chr3 40039528 40040696 -177996462 + HAL1 LINE L1 911 2213 -294 426 226 56 87 chr3 40040722 40040917 -177996241 + HAL1 LINE L1 2319 2507 0 2360 102 0 0 chr3 40041017 40041321 -177995837 + AluSg SINE Alu 1 304 -6 1783 163 11 3 chr3 40041575 40041858 -177995300 + AluSx SINE Alu 1 285 -27 343 125 47 16 chr3 40042151 40042215 -177994943 + L1ME2 LINE L1 5824 5889 -275 241 204 0 20 chr3 40042487 40042536 -177994622 - MIR SINE MIR -69 139 92 851 293 84 3 chr3 40043684 40043995 -177993163 - L2 LINE L2 -719 2595 2260 482 309 25 74 chr3 40044005 40044247 -177992911 - MIR SINE MIR -26 236 10 925 282 122 36 chr3 40044313 40044781 -177992377 - MLT1J LTR MaLR -2 509 2 1883 269 110 29 chr3 40045354 40046358 -177990800 + L2 LINE L2 2228 3309 -4 626 81 270 0 chr3 40046367 40046478 -177990680 - MSTA LTR MaLR -49 379 239 290 176 250 28 chr3 40046884 40046992 -177990166 + MIR SINE MIR 110 241 -21 842 232 28 43 chr3 40047532 40047743 -177989415 - MER58A DNA MER1_type 0 224 17 3080 148 27 36 chr3 40047814 40048373 -177988785 + MLT2B3 LTR ERVL 1 554 0 464 210 210 25 chr3 40048485 40048642 -177988516 - MER5A DNA MER1_type 0 189 4 273 290 109 27 chr3 40048679 40049526 -177987632 - L1MC/D LINE L1 -566 5596 4668 714 231 46 50 chr3 40049532 40049814 -177987344 - L1ME3A LINE L1 0 6170 5890 * 735 234 69 65 chr3 40049810 40050100 -177987058 - L1ME3A LINE L1 -554 5608 5318 1705 148 46 23 chr3 40050174 40050479 -177986679 - AluSx SINE Alu 0 312 1 389 329 241 30 chr3 40100679 40101287 -177935871 - L2 LINE L2 -625 2689 1908 1714 125 82 11 chr3 40101287 40101567 -177935591 - AluSx SINE Alu -12 300 1 389 329 241 30 chr3 40101567 40101669 -177935489 - L2 LINE L2 -1406 1908 1829 575 303 33 33 chr3 40101676 40101920 -177935238 - MIR SINE MIR 0 262 19 190 293 24 122 chr3 40102705 40102828 -177934330 - L2 LINE L2 -208 3064 2954 1449 67 10 0 chr3 40103442 40103635 -177933523 + L1PA5 LINE L1 5958 6152 -2 1612 134 0 0 chr3 40104713 40104937 -177932221 - AluSg/x SINE Alu -16 294 71 1027 233 67 31 chr3 40104937 40105357 -177931801 + LTR7 LTR ERV1 1 435 -15 334 212 132 16 chr3 40105592 40105901 -177931257 - L1MC/D LINE L1 -749 5397 5107 333 288 62 46 chr3 40106158 40106706 -177930452 - L1MC/D LINE L1 -2687 3459 2903 1103 247 24 16 chr3 40107127 40107500 -177929658 + Charlie8 DNA MER1_type 310 685 -1732 421 294 32 8 chr3 40107575 40107701 -177929457 - MIR SINE MIR -64 144 16 267 152 0 0 chr3 40108760 40108806 -177928352 + CT-rich Low_complexity Low_complexity 1 46 0 431 330 75 9 chr3 40109088 40109300 -177927858 - MIR SINE MIR -35 227 2 775 296 16 12 chr3 40109409 40109662 -177927496 - MIR SINE MIR 0 262 9 22 80 0 0 chr3 40109884 40109934 -177927224 + AT_rich Low_complexity Low_complexity 1 50 0 360 0 0 0 chr3 40110871 40110940 -177926218 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 360 0 0 0 chr3 40110940 40110980 -177926178 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 2349 100 44 14 chr3 40110980 40111340 -177925818 - THE1C LTR MaLR -2 373 3 8924 126 55 42 chr3 40111342 40112902 -177924256 - THE1C-int LTR MaLR 0 1580 1 2070 131 74 8 chr3 40112902 40113254 -177923904 - THE1C LTR MaLR 0 375 1 249 174 105 58 chr3 40113298 40113384 -177923774 + L1MC4 LINE L1 6614 6703 -1339 4974 137 12 16 chr3 40113607 40114502 -177922656 + L1PA16 LINE L1 5273 6164 -2 22 35 0 0 chr3 40114652 40114681 -177922477 + AT_rich Low_complexity Low_complexity 1 29 0 259 289 277 0 chr3 40115065 40115148 -177922010 - MER5A DNA MER1_type -6 183 78 305 370 19 72 chr3 40115678 40115940 -177921218 + L2 LINE L2 3025 3272 0 944 62 78 0 chr3 40116096 40116225 -177920933 + MER85 DNA T2_type 1 139 0 1296 231 69 34 chr3 40117789 40118226 -177918932 + LTR16A1 LTR ERVL 1 452 -5 256 255 142 9 chr3 40118885 40118991 -177918167 - MIR SINE MIR -4 258 139 464 302 71 25 chr3 40118992 40119257 -177917901 - MLT1J LTR MaLR -63 535 212 500 202 25 8 chr3 40119394 40119513 -177917645 - MER94 DNA DNA -12 122 2 195 42 0 0 chr3 40120338 40120362 -177916796 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1350 231 84 3 chr3 40120983 40121329 -177915829 - MLT1A2 LTR MaLR 0 374 1 23 0 0 0 chr3 40122193 40122216 -177914942 + AT_rich Low_complexity Low_complexity 1 23 0 1746 169 38 20 chr3 40122420 40122764 -177914394 - MLT2D LTR ERVL -64 350 1 231 345 0 40 chr3 40122768 40122916 -177914242 + MER112 DNA MER1_type 119 260 0 716 275 192 28 chr3 40123371 40123865 -177913293 - MLT1G1 LTR MaLR -6 589 15 306 0 0 0 chr3 40123865 40123899 -177913259 + (A)n Simple_repeat Simple_repeat 1 34 0 473 267 41 7 chr3 40124036 40124182 -177912976 - MIR3 SINE MIR -52 156 6 1714 189 0 31 chr3 40124527 40124849 -177912309 - AluJb SINE Alu 0 312 1 526 319 59 0 chr3 40125416 40125585 -177911573 - MIR3 SINE MIR -3 205 27 726 282 67 56 chr3 40125816 40126248 -177910910 + MLT1K LTR MaLR 152 588 0 229 336 50 25 chr3 40126311 40126430 -177910728 - MIR3 SINE MIR -72 136 15 250 315 43 11 chr3 40126832 40126924 -177910234 + MIR3 SINE MIR 5 99 -109 254 169 65 13 chr3 40127023 40127100 -177910058 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 340 310 141 35 chr3 40127255 40127510 -177909648 + L2 LINE L2 2807 3088 -184 392 303 91 0 chr3 40127915 40128047 -177909111 + MIR SINE MIR 4 147 -115 405 309 19 6 chr3 40128047 40128209 -177908949 + MLT1J1 LTR MaLR 17 180 -266 1348 256 65 43 chr3 40128209 40128654 -177908504 - LTR16C LTR ERVL 0 491 37 457 279 85 40 chr3 40128728 40128929 -177908229 + MLT1J2 LTR MaLR 241 450 0 288 344 153 6 chr3 40129519 40129682 -177907476 - MIR SINE MIR -7 255 69 441 310 79 39 chr3 40130296 40130525 -177906633 - MIR SINE MIR -8 254 17 249 303 195 15 chr3 40130852 40131047 -177906111 + MIR SINE MIR 30 259 -3 2327 161 42 32 chr3 40131754 40132237 -177904921 + MLT2B2 LTR ERVL 2 534 -20 192 97 0 0 chr3 40132239 40132270 -177904888 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 219 154 0 26 chr3 40132277 40132316 -177904842 + (TG)n Simple_repeat Simple_repeat 2 39 0 429 20 0 0 chr3 40132533 40132583 -177904575 + (TA)n Simple_repeat Simple_repeat 1 50 0 180 0 0 0 chr3 40132586 40132606 -177904552 + (GA)n Simple_repeat Simple_repeat 2 21 0 778 249 86 81 chr3 40132748 40133308 -177903850 + MLT1G LTR MaLR 10 588 -2 227 381 26 26 chr3 40133437 40133626 -177903532 - L2 LINE L2 -174 3098 2910 432 0 0 0 chr3 40134477 40134525 -177902633 + (CA)n Simple_repeat Simple_repeat 2 49 0 1074 223 48 65 chr3 40134602 40134974 -177902184 - MLT1A2 LTR MaLR -8 366 1 269 197 14 0 chr3 40135680 40135751 -177901407 + GA-rich Low_complexity Low_complexity 3 74 0 412 264 19 0 chr3 40136427 40136533 -177900625 - MIR SINE MIR -2 260 153 1972 209 26 38 chr3 40136533 40137036 -177900122 + MLT1D LTR MaLR 7 503 -2 357 263 11 32 chr3 40137037 40137132 -177900026 - MIR SINE MIR -108 154 62 458 300 115 10 chr3 40137252 40137452 -177899706 - MIR SINE MIR -1 261 41 317 242 28 99 chr3 40137993 40138175 -177898983 - MLT1H LTR MaLR -204 345 177 210 211 211 0 chr3 40139341 40139393 -177897765 + MIR SINE MIR 90 152 -56 240 266 38 13 chr3 40139790 40139869 -177897289 - MLT1J1 LTR MaLR -294 152 72 2020 128 0 16 chr3 40140113 40140418 -177896740 - AluSx SINE Alu -12 300 1 319 290 19 9 chr3 40140628 40140735 -177896423 + L1ME4a LINE L1 5554 5661 -460 637 151 0 0 chr3 40140746 40140839 -177896319 - FRAM SINE Alu -25 151 59 995 263 75 36 chr3 40141002 40141535 -177895623 + L1MC4 LINE L1 7488 8041 -1 366 278 139 32 chr3 40141585 40141801 -177895357 + L1ME4a LINE L1 5879 6117 -4 215 318 19 37 chr3 40143166 40143273 -177893885 + L2 LINE L2 1359 1463 -1851 1169 266 88 146 chr3 40143395 40143576 -177893582 + L2 LINE L2 1707 1897 -1416 2516 70 0 0 chr3 40143576 40143876 -177893282 - AluY SINE Alu -11 300 1 1169 266 88 146 chr3 40143876 40144464 -177892694 + L2 LINE L2 1897 2517 -796 468 35 0 0 chr3 40144464 40144522 -177892636 + (CA)n Simple_repeat Simple_repeat 1 58 0 1169 266 88 146 chr3 40144522 40145261 -177891897 + L2 LINE L2 2517 3085 -228 2095 109 10 7 chr3 40145261 40145565 -177891593 - AluSp SINE Alu -8 305 1 1169 266 88 146 chr3 40145565 40145782 -177891376 + L2 LINE L2 3085 3313 0 2454 71 0 13 chr3 40145867 40146178 -177890980 + AluY SINE Alu 5 311 0 212 267 44 78 chr3 40146882 40146972 -177890186 + MIR SINE MIR 75 161 -101 670 282 63 15 chr3 40147089 40147486 -177889672 + L1MCa LINE L1 1219 1634 -4792 331 317 138 0 chr3 40147694 40147839 -177889319 - MER5B DNA MER1_type -3 175 11 522 260 39 0 chr3 40147998 40148125 -177889033 - MER5B DNA MER1_type -5 173 42 1532 202 0 39 chr3 40148145 40148452 -177888706 - AluJo SINE Alu -17 295 1 259 358 115 12 chr3 40149254 40149419 -177887739 + MER5A DNA MER1_type 8 189 0 * 731 272 51 13 chr3 40149419 40149643 -177887515 + MIR SINE MIR 16 243 -19 5353 184 28 14 chr3 40150031 40151356 -177885802 - L1MC2 LINE L1 -40 6304 4943 189 0 0 0 chr3 40151356 40151377 -177885781 + (TC)n Simple_repeat Simple_repeat 2 22 0 5353 184 28 14 chr3 40151377 40151858 -177885300 - L1MC2 LINE L1 -1401 4943 4470 189 211 0 0 chr3 40152015 40152067 -177885091 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 261 293 61 24 chr3 40152288 40152500 -177884658 - L1ME LINE L1 -340 5781 5562 442 303 94 37 chr3 40152550 40152794 -177884364 - L1ME LINE L1 -2271 5514 5257 386 315 92 59 chr3 40152921 40153311 -177883847 + L3 LINE CR1 1086 1488 -89 508 316 25 5 chr3 40154786 40154982 -177882176 + LTR16B LTR ERVL 223 422 -42 3783 152 23 54 chr3 40155563 40156400 -177880758 + L1PB4 LINE L1 5344 6154 -2 316 293 128 15 chr3 40157003 40157136 -177880022 - MIR3 SINE MIR -41 167 20 1527 281 122 15 chr3 40157602 40158200 -177878958 + MLT2F LTR ERVL 2 663 0 260 269 76 56 chr3 40158409 40158606 -177878552 + MLT1H LTR MaLR 342 542 -7 481 333 129 0 chr3 40158743 40158968 -177878190 + MIR SINE MIR 5 258 -4 705 249 52 43 chr3 40159605 40159838 -177877320 - MIR SINE MIR 0 262 28 201 74 0 0 chr3 40160381 40160408 -177876750 + (CAG)n Simple_repeat Simple_repeat 2 28 0 459 302 137 26 chr3 40160884 40161245 -177875913 + L2 LINE L2 2614 3016 -256 333 293 35 0 chr3 40161245 40161361 -177875797 + LTR33 LTR ERVL 1 120 -401 1857 138 74 19 chr3 40161700 40162025 -177875133 + MER61A LTR ERV1 1 343 0 2427 180 28 18 chr3 40162025 40162569 -177874589 + MER61A-int LTR ERV1 1 549 -4668 271 128 0 21 chr3 40162617 40162664 -177874494 + MER61A-int LTR ERV1 732 777 -4440 10139 79 27 19 chr3 40162700 40164309 -177872849 + MER61A-int LTR ERV1 1411 3031 -2186 17214 90 19 13 chr3 40164409 40167354 -177869804 + MER61A-int LTR ERV1 2211 5217 0 1572 169 63 30 chr3 40167354 40167686 -177869472 + MER61A LTR ERV1 1 343 0 202 310 0 0 chr3 40167696 40167754 -177869404 + L2 LINE L2 3256 3313 0 201 358 84 0 chr3 40168114 40168209 -177868949 + MIR SINE MIR 100 202 -60 402 292 151 16 chr3 40168607 40168792 -177868366 + MIR SINE MIR 53 262 0 1573 217 37 45 chr3 40169396 40169701 -177867457 - MLT1D LTR MaLR 0 505 204 780 204 0 0 chr3 40169701 40169833 -177867325 - FLAM_A SINE Alu -1 132 1 1573 217 37 45 chr3 40169833 40170016 -177867142 - MLT1D LTR MaLR -301 204 21 289 133 0 0 chr3 40171020 40171065 -177866093 - MADE1 DNA Mariner 0 80 36 937 301 60 0 chr3 40171066 40171401 -177865757 - LTR16C LTR ERVL -57 434 80 2810 134 4 13 chr3 40171780 40172234 -177864924 + L1PA16 LINE L1 5716 6165 -1 203 234 43 0 chr3 40172428 40172475 -177864683 + L2 LINE L2 3242 3290 -23 2333 114 34 0 chr3 40172537 40172889 -177864269 + THE1B LTR MaLR 1 364 0 186 43 0 0 chr3 40173335 40173358 -177863800 + (A)n Simple_repeat Simple_repeat 1 23 0 299 338 65 13 chr3 40173624 40173778 -177863380 + L2 LINE L2 2245 2406 -908 1939 258 108 24 chr3 40174358 40175095 -177862063 - L1MD2 LINE L1 -227 6066 5268 23 0 0 0 chr3 40175123 40175146 -177862012 + AT_rich Low_complexity Low_complexity 1 23 0 2068 48 0 0 chr3 40175358 40175606 -177861552 - L1PA7 LINE L1 -2 6152 5905 2628 120 12 8 chr3 40175619 40176019 -177861139 - LTR3 LTR ERVK -9 423 22 4983 57 7 3 chr3 40176037 40176750 -177860408 - L1PA7 LINE L1 -242 5912 5198 1250 88 0 0 chr3 40176747 40176928 -177860230 - L1P3 LINE L1 -5176 1285 1105 * 226 139 0 0 chr3 40176948 40176984 -177860174 + U2 snRNA snRNA 1 36 -152 292 188 50 0 chr3 40176984 40177064 -177860094 + L1ME4a LINE L1 5319 5402 -957 * 5424 253 60 27 chr3 40177061 40177085 -177860073 - L1MD2 LINE L1 -1634 4446 4424 2122 159 11 124 chr3 40177085 40177633 -177859525 + MER66B LTR ERV1 1 486 0 5424 253 60 27 chr3 40177633 40180004 -177857154 - L1MD2 LINE L1 -1656 4424 1935 2145 73 33 4 chr3 40180004 40180303 -177856855 - AluY SINE Alu 0 307 1 5424 253 60 27 chr3 40180303 40180932 -177856226 - L1MD2 LINE L1 -4145 1935 1328 974 255 82 55 chr3 40180945 40181708 -177855450 - L1MD2 LINE L1 -4864 1216 469 3077 152 40 78 chr3 40181825 40182543 -177854615 + LTR8 LTR ERV1 1 691 0 358 235 10 0 chr3 40183609 40183736 -177853422 + L1ME4a LINE L1 5695 5826 -295 226 241 19 0 chr3 40183787 40183895 -177853263 + (TA)n Simple_repeat Simple_repeat 1 110 0 1443 219 16 42 chr3 40184431 40184716 -177852442 + L1ME1 LINE L1 5740 6012 -154 1612 156 65 54 chr3 40184716 40185087 -177852071 - THE1C LTR MaLR 0 375 1 1443 219 16 42 chr3 40185087 40185235 -177851923 + L1ME1 LINE L1 6012 6162 -4 867 216 6 0 chr3 40185392 40185563 -177851595 + FRAM SINE Alu 1 166 -10 542 244 39 0 chr3 40185563 40185690 -177851468 - MER5B DNA MER1_type -45 133 2 189 304 108 78 chr3 40186167 40186371 -177850787 - MIR SINE MIR -50 212 3 207 203 43 43 chr3 40186417 40186486 -177850672 - MIR SINE MIR 0 262 194 536 232 18 0 chr3 40186530 40186642 -177850516 - MIR SINE MIR -71 191 78 767 180 16 0 chr3 40187549 40187671 -177849487 - FLAM_C SINE Alu -19 124 1 361 167 52 52 chr3 40189104 40189200 -177847958 + MER53 DNA DNA 23 118 -71 4171 147 36 1 chr3 40189223 40189970 -177847188 - L1PA16 LINE L1 0 6166 5394 * 6972 222 36 11 chr3 40189969 40192254 -177844904 - L1PA15-16 LINE L1 -2640 4209 1852 2584 93 6 0 chr3 40192305 40192658 -177844500 + THE1A LTR MaLR 1 355 0 471 248 116 0 chr3 40192669 40192798 -177844360 + MLT1A1 LTR MaLR 199 342 -23 243 91 0 0 chr3 40192796 40192829 -177844329 + U2 snRNA snRNA 1 33 -155 * 357 242 48 0 chr3 40193921 40194045 -177843113 + LTR16A1 LTR ERVL 320 449 -8 1044 221 91 100 chr3 40194674 40195135 -177842023 - LTR16A1 LTR ERVL 0 457 1 333 161 0 0 chr3 40196631 40196687 -177840471 + U2 snRNA snRNA 4 59 -129 371 332 30 64 chr3 40196687 40196952 -177840206 - MIR SINE MIR -1 261 6 254 397 45 10 chr3 40197147 40197439 -177839719 + L2 LINE L2 2456 2757 -557 1362 265 54 15 chr3 40197703 40198167 -177838991 - LTR16C LTR ERVL -6 485 4 370 266 62 9 chr3 40198174 40198287 -177838871 + MER94 DNA DNA 9 127 -7 240 355 40 24 chr3 40198492 40198616 -177838542 + MIR SINE MIR 21 146 -62 241 246 36 103 chr3 40199476 40199671 -177837487 - HAL1 LINE L1 -1 2506 2325 983 282 52 70 chr3 40199672 40200155 -177837003 + MLT1J LTR MaLR 1 474 -37 789 289 109 33 chr3 40200185 40200815 -177836343 - HAL1 LINE L1 -188 2319 1642 357 312 45 13 chr3 40202367 40202521 -177834637 + MIR SINE MIR 53 211 -51 272 346 19 57 chr3 40202731 40202890 -177834268 - MER5A DNA MER1_type -2 187 35 230 320 20 67 chr3 40202759 40202909 -177834249 + MER5A DNA MER1_type 43 185 -4 * 219 296 0 0 chr3 40204013 40204067 -177833091 + (CA)n Simple_repeat Simple_repeat 2 55 0 193 273 169 0 chr3 40204252 40204329 -177832829 + MIR SINE MIR 112 201 -61 1934 213 67 17 chr3 40204383 40204864 -177832294 + MLT1D LTR MaLR 1 374 0 625 348 49 22 chr3 40206162 40206610 -177830548 + MLT1K LTR MaLR 10 469 -119 259 353 63 43 chr3 40206682 40206889 -177830269 - L2 LINE L2 -388 2926 2716 1509 225 45 25 chr3 40206956 40207400 -177829758 + Charlie4a DNA MER1_type 36 488 -20 637 229 51 40 chr3 40208692 40208719 -177828439 - MER45A DNA AcHobo -1404 177 152 1889 133 29 52 chr3 40208719 40208877 -177828281 + THE1C LTR MaLR 1 161 -214 2441 69 10 0 chr3 40208877 40209183 -177827975 - AluY SINE Alu -2 309 1 1889 133 29 52 chr3 40209183 40209408 -177827750 + THE1C LTR MaLR 161 375 0 637 229 51 40 chr3 40209408 40209555 -177827603 - MER45A DNA AcHobo -1429 152 1 362 279 53 89 chr3 40209890 40210398 -177826760 - HAL1 LINE L1 -905 1602 1113 2941 224 59 9 chr3 40210796 40211590 -177825568 + MER97a DNA MER1_type? 57 890 -4 696 286 56 31 chr3 40212456 40212871 -177824287 + MLT1G LTR MaLR 10 416 -126 2009 149 10 0 chr3 40213327 40213635 -177823523 - AluSx SINE Alu -1 311 1 404 277 45 25 chr3 40213974 40214321 -177822837 + MER110A LTR ERV1 95 470 0 188 135 27 0 chr3 40214480 40214517 -177822641 + GA-rich Low_complexity Low_complexity 3 40 0 685 278 16 26 chr3 40214519 40214713 -177822445 - MIR SINE MIR -64 198 7 946 198 21 11 chr3 40217073 40217260 -177819898 - MER5A DNA MER1_type 0 189 1 243 193 18 18 chr3 40217386 40217443 -177819715 + GA-rich Low_complexity Low_complexity 4 60 0 210 286 71 14 chr3 40218245 40218315 -177818843 + L2 LINE L2 3161 3234 -38 616 230 0 0 chr3 40218767 40218880 -177818278 + MER81 DNA DNA 1 113 -1 308 292 6 60 chr3 40220058 40220214 -177816944 - MIR SINE MIR -63 145 36 302 252 204 10 chr3 40220407 40220510 -177816648 - L2 LINE L2 0 3272 3150 949 202 83 0 chr3 40220515 40220708 -177816450 - MER58A DNA MER1_type -3 221 13 192 77 0 0 chr3 40220771 40220797 -177816361 + (TTG)n Simple_repeat Simple_repeat 2 27 0 372 180 144 14 chr3 40220823 40220962 -177816196 - L1ME4a LINE L1 -4 6117 5961 222 37 0 0 chr3 40221070 40221097 -177816061 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5028 96 64 73 chr3 40221117 40222020 -177815138 - THE1B-int LTR MaLR -685 895 1 2347 138 3 22 chr3 40222020 40222391 -177814767 - THE1B LTR MaLR 0 364 1 442 331 11 0 chr3 40222443 40222618 -177814540 - LTR16A LTR ERVL -89 361 185 260 307 44 0 chr3 40223042 40223156 -177814002 + (TGAG)n Simple_repeat Simple_repeat 3 121 0 236 228 0 0 chr3 40223336 40223393 -177813765 + Charlie8 DNA MER1_type 1360 1416 -1001 826 294 58 7 chr3 40223422 40223697 -177813461 - LTR16C LTR ERVL -14 477 189 201 194 30 104 chr3 40224972 40225039 -177812119 - MIR SINE MIR -111 151 90 643 277 53 77 chr3 40225475 40225854 -177811304 - MLT1J LTR MaLR -52 459 90 2039 136 27 3 chr3 40226054 40226392 -177810766 - L1PB4 LINE L1 0 6156 5811 284 277 39 15 chr3 40227463 40227593 -177809565 - L1ME4a LINE L1 -310 5811 5679 289 307 111 29 chr3 40227901 40228217 -177808941 + L1MC/D LINE L1 5317 5658 -2150 249 208 0 0 chr3 40228227 40228299 -177808859 + (CA)n Simple_repeat Simple_repeat 1 72 0 450 0 0 0 chr3 40228326 40228376 -177808782 + (A)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr3 40228397 40228425 -177808733 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 40228481 40228504 -177808654 + AT_rich Low_complexity Low_complexity 1 23 0 40 37 0 0 chr3 40228526 40228580 -177808578 + AT_rich Low_complexity Low_complexity 1 54 0 535 259 5 22 chr3 40228580 40228765 -177808393 - L1PB2 LINE L1 -19 6132 5951 185 229 0 66 chr3 40230332 40230393 -177806765 + L2 LINE L2 3257 3313 0 1518 237 121 11 chr3 40230433 40230978 -177806180 + L1ME3 LINE L1 5488 6092 -70 244 179 45 0 chr3 40231005 40231072 -177806086 + (CATA)n Simple_repeat Simple_repeat 3 72 0 243 293 61 12 chr3 40231250 40231332 -177805826 - MIR SINE MIR -62 146 61 264 30 0 0 chr3 40231365 40231398 -177805760 + (CA)n Simple_repeat Simple_repeat 2 34 0 2383 95 0 3 chr3 40231981 40232287 -177804871 - AluSg1 SINE Alu 0 309 5 523 299 7 14 chr3 40233170 40233317 -177803841 + MIR SINE MIR 12 157 -105 41 58 0 0 chr3 40233322 40233391 -177803767 + AT_rich Low_complexity Low_complexity 1 69 0 1449 67 10 0 chr3 40234276 40234469 -177802689 - L1PA5 LINE L1 -2 6152 5958 918 302 16 4 chr3 40234941 40235186 -177801972 - MIR SINE MIR 0 262 15 285 318 140 9 chr3 40235772 40235879 -177801279 - L2 LINE L2 0 3313 3193 1104 186 13 22 chr3 40235883 40236109 -177801049 - MER58A DNA MER1_type 0 224 1 466 267 107 9 chr3 40236168 40236393 -177800765 - HAL1b LINE L1 -798 550 304 22 0 0 0 chr3 40236710 40236732 -177800426 + AT_rich Low_complexity Low_complexity 1 22 0 1663 217 14 22 chr3 40236838 40237206 -177799952 + MLT1A1 LTR MaLR 1 365 0 186 103 0 0 chr3 40237515 40237544 -177799614 + (TG)n Simple_repeat Simple_repeat 2 30 0 579 312 43 19 chr3 40238748 40239169 -177797989 - L1ME3A LINE L1 -239 5931 5500 209 281 0 31 chr3 40239336 40239400 -177797758 - L2 LINE L2 -3 3310 3249 403 304 0 20 chr3 40239539 40239687 -177797471 + MIR SINE MIR 118 262 0 302 277 45 9 chr3 40240093 40240201 -177796957 - MLT1L LTR MaLR -27 588 477 693 310 29 14 chr3 40240201 40240653 -177796505 + LTR16C LTR ERVL 3 491 0 326 227 48 51 chr3 40240720 40240946 -177796212 - MLT1L LTR MaLR -332 283 11 1003 167 105 4 chr3 40242781 40243029 -177794129 + MER33 DNA MER1_type 1 266 -58 21 0 0 0 chr3 40243671 40243692 -177793466 + AT_rich Low_complexity Low_complexity 1 21 0 435 270 104 65 chr3 40243990 40244385 -177792773 + L2 LINE L2 2266 2734 -580 1660 265 62 16 chr3 40244436 40245284 -177791874 + L1ME3A LINE L1 5083 5973 -197 774 146 18 111 chr3 40245291 40245462 -177791696 + AluJo SINE Alu 101 255 -57 1219 202 36 39 chr3 40246038 40246375 -177790783 - L1MB7 LINE L1 -20 6164 5829 1458 187 67 12 chr3 40247892 40248259 -177788899 - L1MB2 LINE L1 -7 6164 5815 4854 151 23 4 chr3 40248267 40249848 -177787310 - L1PA16 LINE L1 -9 6157 4549 1879 110 11 0 chr3 40250046 40250309 -177786849 + AluSq SINE Alu 1 266 -47 35 0 0 0 chr3 40252401 40252436 -177784722 + AT_rich Low_complexity Low_complexity 1 35 0 296 336 64 0 chr3 40252616 40252741 -177784417 - MIR SINE MIR -77 185 53 287 355 152 5 chr3 40253275 40253486 -177783672 + MIR SINE MIR 8 249 -13 849 297 76 54 chr3 40253725 40254227 -177782931 - MLT1K LTR MaLR -65 523 11 764 275 32 53 chr3 40254266 40254513 -177782645 - MIR SINE MIR -1 261 20 1245 206 54 42 chr3 40254553 40254888 -177782270 + MLT1D LTR MaLR 22 360 -145 253 105 0 53 chr3 40254919 40254976 -177782182 + (TCTCC)n Simple_repeat Simple_repeat 1 54 0 1446 254 123 40 chr3 40255025 40255601 -177781557 + MLT1E3 LTR MaLR 1 624 0 659 190 0 25 chr3 40255680 40255828 -177781330 + FLAM_A SINE Alu 5 133 0 552 225 50 8 chr3 40256200 40256320 -177780838 + MIR SINE MIR 72 196 -66 558 240 77 52 chr3 40256605 40256838 -177780320 - MIR SINE MIR -12 250 12 180 0 0 0 chr3 40257227 40257247 -177779911 + (T)n Simple_repeat Simple_repeat 1 20 0 296 257 181 0 chr3 40258003 40258108 -177779050 + MER5C DNA MER1_type 2 125 -199 229 236 28 14 chr3 40258238 40258310 -177778848 + GA-rich Low_complexity Low_complexity 3 75 0 635 263 91 51 chr3 40258390 40258762 -177778396 + L2 LINE L2 2887 3273 -40 383 38 19 0 chr3 40258775 40258828 -177778330 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 189 302 82 63 chr3 40259256 40259415 -177777743 + MIR SINE MIR 15 176 -86 301 164 18 0 chr3 40260092 40260147 -177777011 + L2 LINE L2 3257 3312 -1 4993 140 49 10 chr3 40261117 40262657 -177774501 - L1PB2 LINE L1 -2 6149 4549 444 212 62 26 chr3 40262906 40263019 -177774139 + MER63 DNA MER1_type 1 743 -93 562 310 58 25 chr3 40263709 40263983 -177773175 - MER115 DNA AcHobo -263 430 148 317 329 77 12 chr3 40264088 40264258 -177772900 - L2 LINE L2 -161 3111 2931 840 196 0 80 chr3 40264832 40265031 -177772127 - MER58A DNA MER1_type -2 222 40 2106 122 7 0 chr3 40265448 40265742 -177771416 + AluSg SINE Alu 3 298 -12 503 332 22 32 chr3 40265771 40266048 -177771110 - MLT1I LTR MaLR -64 345 72 421 346 58 5 chr3 40266101 40266289 -177770869 + MIR SINE MIR 63 260 -2 192 419 12 12 chr3 40266278 40266364 -177770794 + MIR SINE MIR 55 140 -68 * 1019 306 72 15 chr3 40266681 40267138 -177770020 + MLT2E LTR ERVL 1 483 -145 484 109 20 79 chr3 40267138 40267182 -177769976 + MLT1B LTR MaLR 1 46 -344 2167 76 0 0 chr3 40267182 40267458 -177769700 - AluY SINE Alu -17 294 19 484 109 20 79 chr3 40267458 40267514 -177769644 + MLT1B LTR MaLR 46 95 -295 659 187 7 43 chr3 40267528 40267667 -177769491 - AluJo SINE Alu -178 134 1 1448 139 25 65 chr3 40267670 40267993 -177769165 + MLT1B LTR MaLR 81 390 0 5748 85 22 3 chr3 40268099 40268959 -177768199 + L1PA12 LINE L1 5291 6166 -2 310 164 82 0 chr3 40268967 40269028 -177768130 + MLT2E LTR ERVL 563 628 0 632 268 113 22 chr3 40269028 40269259 -177767899 + MIR SINE MIR 10 261 -1 1909 251 8 32 chr3 40269529 40269662 -177767496 + MLT1F LTR MaLR 1 136 -406 2165 112 0 16 chr3 40269662 40269974 -177767184 + AluSx SINE Alu 1 307 -5 1909 251 8 32 chr3 40269974 40270335 -177766823 + MLT1F LTR MaLR 136 483 -59 490 257 45 92 chr3 40270421 40270700 -177766458 - MIR SINE MIR 0 262 3 2140 128 76 17 chr3 40271405 40271749 -177765409 - THE1B LTR MaLR 0 364 1 367 244 170 9 chr3 40272108 40272357 -177764801 - L1MC/D LINE L1 -561 5560 5478 221 175 53 0 chr3 40273007 40273064 -177764094 + (TA)n Simple_repeat Simple_repeat 1 60 0 790 237 114 31 chr3 40273092 40273409 -177763749 - MER2 DNA MER2_type -1 343 1 321 301 50 60 chr3 40273411 40273748 -177763410 - L1ME3A LINE L1 -243 5927 5592 1655 249 75 78 chr3 40273764 40275032 -177762126 - L1MC5 LINE L1 -58 7903 6640 990 231 9 9 chr3 40275358 40275579 -177761579 - MER58A DNA MER1_type 0 224 4 387 261 76 17 chr3 40276848 40276967 -177760191 + MIR SINE MIR 60 185 -77 814 246 63 85 chr3 40276999 40277553 -177759605 + MER34 LTR ERV1 1 542 0 182 257 0 0 chr3 40277797 40277832 -177759326 + L2 LINE L2 3263 3297 -16 538 258 145 6 chr3 40277930 40278089 -177759069 + MER5A DNA MER1_type 9 189 0 289 240 120 38 chr3 40278846 40279112 -177758046 - MER34 LTR ERV1 0 734 353 337 253 143 58 chr3 40279473 40279627 -177757531 - L1ME4a LINE L1 -87 6034 5868 300 319 8 17 chr3 40279679 40279798 -177757360 - L1MC4 LINE L1 -5 8037 7920 1438 189 130 13 chr3 40280280 40280656 -177756502 - MER39 LTR ERV1 0 707 288 1522 107 51 5 chr3 40280698 40280914 -177756244 - AluSg/x SINE Alu 0 312 87 10170 123 30 4 chr3 40280917 40282560 -177754598 - Tigger1 DNA MER2_type -733 1685 1 2106 130 0 3 chr3 40282583 40282895 -177754263 - AluSx SINE Alu 0 311 1 195 275 0 0 chr3 40283916 40283956 -177753202 + L2 LINE L2 3215 3254 -18 305 232 63 11 chr3 40284130 40284225 -177752933 - MER103 DNA DNA -45 121 22 21 36 0 0 chr3 40285078 40285106 -177752052 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 40285132 40285169 -177751989 + AT_rich Low_complexity Low_complexity 1 37 0 1485 216 86 16 chr3 40285916 40286083 -177751075 + LTR37B LTR ERV1 9 163 -305 2548 187 38 27 chr3 40286083 40286635 -177750523 + MER89 LTR ERV1 1 558 -1 1485 216 86 16 chr3 40286635 40286897 -177750261 + LTR37B LTR ERV1 163 468 0 1646 157 128 33 chr3 40288168 40288621 -177748537 + LTR54B LTR ERV1 1 496 -2 309 324 10 0 chr3 40288787 40288889 -177748269 - L1ME4a LINE L1 -289 5881 5779 573 211 122 102 chr3 40289173 40289477 -177747681 - MLT1H LTR MaLR -125 424 115 552 233 54 3 chr3 40289480 40289680 -177747478 - MLT1G1 LTR MaLR 0 595 298 447 296 60 9 chr3 40289706 40289918 -177747240 - MLT1G1 LTR MaLR -332 223 1 251 255 20 20 chr3 40289927 40290025 -177747133 - MLT1H LTR MaLR -444 105 8 1458 155 21 55 chr3 40291330 40291621 -177745537 - AluJo SINE Alu -15 297 17 279 317 35 13 chr3 40292066 40292293 -177744865 + L1ME3A LINE L1 2903 3134 -3012 585 269 115 15 chr3 40292667 40293411 -177743747 + L1ME3A LINE L1 5118 5925 -245 472 82 59 24 chr3 40293740 40293825 -177743333 + MER4A LTR ERV1 1 88 -576 1595 116 50 28 chr3 40293834 40294172 -177742986 + MER4A LTR ERV1 261 664 0 5642 120 12 9 chr3 40294637 40295528 -177741630 + MER4D LTR ERV1 1 894 -9 2300 225 103 21 chr3 40295622 40296249 -177740909 - L1ME2 LINE L1 -25 6139 5422 1394 211 11 7 chr3 40296249 40296549 -177740609 - AluJb SINE Alu 0 301 1 2300 225 103 21 chr3 40296549 40296782 -177740376 - L1ME2 LINE L1 -742 5422 5209 * 5658 158 26 30 chr3 40296757 40298862 -177738296 - L1 LINE L1 -2664 4901 2811 2119 140 36 36 chr3 40298862 40299226 -177737932 - THE1B LTR MaLR 0 364 1 10802 112 2 8 chr3 40299226 40300317 -177736841 - THE1B-int LTR MaLR 0 1580 499 7556 33 0 0 chr3 40300317 40301533 -177735625 - L1PA4 LINE L1 0 6155 4938 10802 112 2 8 chr3 40301533 40302030 -177735128 - THE1B-int LTR MaLR -1081 499 1 2223 124 33 33 chr3 40302030 40302392 -177734766 - THE1B LTR MaLR 0 364 3 12897 171 76 24 chr3 40302394 40304956 -177732202 - L1 LINE L1 -4750 2815 106 2257 101 3 10 chr3 40304956 40305263 -177731895 + AluSc SINE Alu 1 305 -4 12897 171 76 24 chr3 40305263 40305375 -177731783 - L1 LINE L1 -7459 106 1 730 315 88 49 chr3 40305416 40306351 -177730807 + L1MC/D LINE L1 4605 5585 -748 306 0 0 0 chr3 40306643 40306677 -177730481 + (CA)n Simple_repeat Simple_repeat 2 35 0 213 351 108 9 chr3 40306938 40307049 -177730109 - L3 LINE CR1 -1025 552 431 525 284 91 50 chr3 40307884 40308299 -177728859 - MLT1K LTR MaLR 0 588 139 1113 223 31 71 chr3 40308544 40308925 -177728233 + MLT1A2 LTR MaLR 1 366 -8 211 345 164 34 chr3 40309105 40309604 -177727554 + L2 LINE L2 1932 2495 -819 282 289 148 23 chr3 40309638 40309766 -177727392 + L2 LINE L2 2630 2773 -541 558 286 44 28 chr3 40309925 40310107 -177727051 - MIR SINE MIR -65 197 13 246 256 51 13 chr3 40310183 40310261 -177726897 + Charlie4 DNA MER1_type 1863 1943 -18 415 332 31 26 chr3 40311631 40311860 -177725298 + MLT1L LTR MaLR 364 593 -22 207 301 109 58 chr3 40312004 40312280 -177724878 + L2 LINE L2 2656 2945 -369 273 336 24 0 chr3 40313990 40314115 -177723043 - MIR SINE MIR -17 245 118 241 419 27 7 chr3 40314395 40314543 -177722615 - L2 LINE L2 -454 2860 2710 243 173 0 0 chr3 40315193 40315245 -177721913 + (CA)n Simple_repeat Simple_repeat 2 53 0 185 352 21 28 chr3 40316060 40316202 -177720956 + L2 LINE L2 2341 2481 -833 406 307 79 36 chr3 40316250 40316579 -177720579 + L2 LINE L2 2599 2941 -373 185 300 56 33 chr3 40316732 40316822 -177720336 + L2 LINE L2 3181 3272 0 360 125 0 0 chr3 40319329 40319393 -177717765 + (GA)n Simple_repeat Simple_repeat 1 64 0 212 247 188 35 chr3 40320459 40320544 -177716614 + L2 LINE L2 3155 3252 -20 865 198 11 28 chr3 40320814 40320996 -177716162 + AluJb SINE Alu 134 312 0 1614 162 0 52 chr3 40321446 40321736 -177715422 + AluJo SINE Alu 3 277 -35 180 0 0 0 chr3 40321749 40321769 -177715389 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2111 119 3 7 chr3 40323035 40323330 -177713828 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr3 40323724 40323745 -177713413 + AT_rich Low_complexity Low_complexity 1 21 0 424 317 117 44 chr3 40374263 40374673 -177662485 + L2 LINE L2 2828 3267 -5 358 189 132 9 chr3 40374673 40374779 -177662379 + MER103 DNA DNA 37 155 -11 1993 246 87 27 chr3 40375281 40375311 -177661847 - MLT1G1 LTR MaLR 0 595 568 1838 155 129 26 chr3 40375311 40375699 -177661459 + MSTA LTR MaLR 1 428 0 9843 117 11 56 chr3 40375701 40377353 -177659805 + MSTA-int LTR MaLR 3 1580 0 2146 135 128 13 chr3 40377353 40377737 -177659421 + MSTA LTR MaLR 1 428 0 1993 246 87 27 chr3 40377737 40378263 -177658895 - MLT1G1 LTR MaLR -26 569 1 1802 123 0 0 chr3 40378521 40378764 -177658394 + AluSc SINE Alu 62 304 -5 698 332 87 7 chr3 40379217 40379633 -177657525 + LTR16A LTR ERVL 2 450 0 942 283 75 40 chr3 40381000 40381400 -177655758 + LTR16C LTR ERVL 73 486 -5 726 323 70 29 chr3 40381880 40382292 -177654866 - LTR16B LTR ERVL -31 433 5 1499 244 9 9 chr3 40382362 40382678 -177654480 + MLT1I LTR MaLR 94 409 0 395 253 20 10 chr3 40384507 40384606 -177652552 - MIR SINE MIR -61 147 48 395 287 7 44 chr3 40385087 40385223 -177651935 - L2 LINE L2 -4 3268 3138 1319 252 117 68 chr3 40386906 40386957 -177650201 + MLT1G1 LTR MaLR 5 52 -543 2316 108 108 38 chr3 40386957 40387357 -177649801 - MSTA LTR MaLR 0 428 1 9817 157 30 2 chr3 40387357 40388964 -177648194 - MSTA-int LTR MaLR 0 1651 1 2314 98 103 54 chr3 40388966 40389188 -177647970 - MSTA LTR MaLR -2 426 216 2225 92 0 7 chr3 40389188 40389494 -177647664 - AluSg SINE Alu 0 304 1 2314 98 103 54 chr3 40389494 40389676 -177647482 - MSTA LTR MaLR -212 216 1 1319 252 117 68 chr3 40389676 40390183 -177646975 + MLT1G1 LTR MaLR 52 595 0 183 305 183 0 chr3 40390183 40390314 -177646844 - L2 LINE L2 -472 2842 2688 1152 282 76 6 chr3 40390322 40390652 -177646506 - MLT1H1 LTR MaLR -199 356 4 396 279 12 31 chr3 40390719 40390880 -177646278 + L2 LINE L2 3156 3313 0 206 196 78 0 chr3 40390883 40390934 -177646224 + L2 LINE L2 3180 3234 -79 215 308 26 13 chr3 40391784 40391862 -177645296 + MIR SINE MIR 29 107 -155 19802 153 33 43 chr3 40391871 40397617 -177639541 + L1MA2 LINE L1 13 5834 -1731 1251 77 0 0 chr3 40397617 40397773 -177639385 + AluY SINE Alu 150 305 -6 19802 153 33 43 chr3 40397773 40398694 -177638464 + L1MA2 LINE L1 5834 6763 -802 4192 121 34 0 chr3 40398794 40399465 -177637693 + L1MA2 LINE L1 7030 7723 0 279 269 51 0 chr3 40399493 40399568 -177637590 + MIR SINE MIR 106 184 -78 510 331 88 22 chr3 40399568 40399749 -177637409 + MER91A DNA MER1_type 1 193 -3 31 44 0 0 chr3 40399774 40399819 -177637339 + AT_rich Low_complexity Low_complexity 1 45 0 228 353 12 0 chr3 40399821 40399906 -177637252 + MIR SINE MIR 175 260 -2 367 245 0 16 chr3 40400262 40400384 -177636774 + L1MC/D LINE L1 5653 5768 -353 1301 226 109 24 chr3 40400580 40401001 -177636157 - LTR16A1 LTR ERVL 0 457 1 2244 100 0 0 chr3 40401263 40401553 -177635605 + AluSg SINE Alu 1 290 -20 351 286 59 84 chr3 40404307 40405353 -177631805 + L1P LINE L1 2933 3937 -2209 508 243 19 0 chr3 40405353 40405460 -177631698 + MER81 DNA DNA 5 113 -1 351 286 59 84 chr3 40405460 40405774 -177631384 + L1P LINE L1 3937 4258 -1888 853 274 87 0 chr3 40406925 40407224 -177629934 - MLT1I LTR MaLR 0 409 85 365 275 25 25 chr3 40408272 40408392 -177628766 - MLT1L LTR MaLR -84 531 412 364 238 59 30 chr3 40408644 40408745 -177628413 + MIR3 SINE MIR 97 200 -8 503 283 54 0 chr3 40408774 40408922 -177628236 + MIR SINE MIR 96 250 -12 237 108 0 0 chr3 40409052 40409089 -177628069 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 335 181 30 45 chr3 40409669 40409868 -177627290 + AluJo SINE Alu 1 292 -9 1460 200 48 97 chr3 40410227 40410743 -177626415 + MER110 LTR ERV1 1 491 0 500 278 17 52 chr3 40411745 40411918 -177625240 + MIR SINE MIR 23 189 -73 342 215 38 0 chr3 40411974 40412053 -177625105 - MLT1I LTR MaLR -22 387 306 468 238 43 67 chr3 40412089 40412299 -177624859 - MLT1I LTR MaLR -202 207 3 1245 255 46 95 chr3 40412465 40413210 -177623948 + MER21B LTR ERV1 6 713 -150 206 307 20 30 chr3 40413228 40413329 -177623829 - L2 LINE L2 -54 3259 3160 294 222 22 11 chr3 40413463 40413553 -177623605 + Charlie8 DNA MER1_type 85 175 -2242 262 347 51 0 chr3 40413705 40413803 -177623355 - MIR SINE MIR -76 132 30 205 171 0 0 chr3 40414020 40414055 -177623103 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 668 298 46 27 chr3 40414068 40414397 -177622761 + L1MEc LINE L1 47 381 -6015 714 212 132 0 chr3 40414676 40414865 -177622293 + MER20 DNA MER1_type 1 214 -5 486 279 11 11 chr3 40414916 40415099 -177622059 + L1MEc LINE L1 683 865 -5531 421 312 213 20 chr3 40415176 40415273 -177621885 - L2 LINE L2 -35 3278 3201 198 118 0 0 chr3 40415273 40415307 -177621851 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 421 312 213 20 chr3 40415307 40415510 -177621648 - L2 LINE L2 -112 3201 2920 5040 156 26 27 chr3 40415529 40417347 -177619811 + L1MA3 LINE L1 4486 6304 -1 286 258 68 89 chr3 40417364 40417386 -177619772 - L2 LINE L2 -420 2894 2873 2246 147 5 33 chr3 40417386 40417753 -177619405 - LTR18A LTR ERVL 0 357 1 286 258 68 89 chr3 40417753 40417879 -177619279 - L2 LINE L2 -441 2873 2748 562 192 87 52 chr3 40417879 40418051 -177619107 - MER5B DNA MER1_type 0 178 1 286 258 68 89 chr3 40418051 40418091 -177619067 - L2 LINE L2 -566 2748 2709 2175 120 0 7 chr3 40418793 40419093 -177618065 + AluSx SINE Alu 1 298 -14 597 238 38 44 chr3 40419142 40419302 -177617856 + MER5A DNA MER1_type 30 188 -1 408 188 23 0 chr3 40420277 40420405 -177616753 + (TA)n Simple_repeat Simple_repeat 2 132 0 619 145 6 23 chr3 40420535 40420707 -177616451 + (TA)n Simple_repeat Simple_repeat 2 170 0 296 232 37 0 chr3 40420732 40420814 -177616344 + MER20 DNA MER1_type 131 215 -4 591 278 32 32 chr3 40421413 40421629 -177615529 - L2 LINE L2 0 3313 3098 451 237 8 25 chr3 40421693 40421811 -177615347 - L2 LINE L2 -534 2780 2665 656 305 39 13 chr3 40421815 40422048 -177615110 - L2 LINE L2 -452 2862 2624 207 277 123 0 chr3 40424160 40424225 -177612933 + MIR SINE MIR 75 147 -115 209 219 0 0 chr3 40424652 40424693 -177612465 + L2 LINE L2 3268 3308 -5 233 241 48 12 chr3 40425735 40425818 -177611340 + MIR SINE MIR 70 155 -107 1809 233 107 34 chr3 40426051 40426678 -177610480 + MER76 LTR ERV 1 673 -15 2585 52 3 0 chr3 40426766 40427074 -177610084 - AluY SINE Alu 0 311 3 295 232 11 32 chr3 40427927 40428022 -177609136 - L1ME4a LINE L1 -65 6056 5964 699 284 106 23 chr3 40428074 40428467 -177608691 - LTR33 LTR ERVL -8 513 88 704 199 7 0 chr3 40428467 40428603 -177608555 - MER58B DNA MER1_type 0 341 205 263 299 10 31 chr3 40428661 40428758 -177608400 - LTR33 LTR ERVL -424 97 3 201 195 0 0 chr3 40428888 40428929 -177608229 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 219 69 0 0 chr3 40428931 40428960 -177608198 + (CA)n Simple_repeat Simple_repeat 2 30 0 299 271 106 46 chr3 40429182 40429400 -177607758 + L1MC/D LINE L1 5631 5861 -1947 312 258 0 22 chr3 40429417 40429506 -177607652 + (TATG)n Simple_repeat Simple_repeat 2 88 0 629 308 72 14 chr3 40429770 40430118 -177607040 + MERVL LTR ERVL 2629 2996 -2489 1618 304 53 11 chr3 40430151 40430766 -177606392 + MERVL LTR ERVL 3087 3686 -1799 3825 199 60 36 chr3 40430961 40431893 -177605265 + L1M4 LINE L1 4 957 -5585 2677 137 28 19 chr3 40432000 40432424 -177604734 - MSTC LTR MaLR 0 428 1 614 213 25 0 chr3 40434347 40434469 -177602689 + L2 LINE L2 3189 3313 0 * 772 272 86 9 chr3 40434466 40434698 -177602460 + MIR SINE MIR 13 262 0 240 167 106 15 chr3 40435234 40435300 -177601858 + MLT1J LTR MaLR 110 181 -330 262 171 53 26 chr3 40435480 40435556 -177601602 + MLT1L LTR MaLR 532 609 -6 1670 194 10 10 chr3 40435916 40436210 -177600948 + AluJo SINE Alu 1 294 -18 315 254 94 7 chr3 40436228 40436366 -177600792 + LTR16A1 LTR ERVL 246 395 -62 270 200 17 0 chr3 40436501 40436561 -177600597 + LTR16A1 LTR ERVL 397 457 0 519 15 0 0 chr3 40437297 40437363 -177599795 - L1PA13 LINE L1 -4 6159 6094 23 33 0 0 chr3 40437690 40437720 -177599438 + AT_rich Low_complexity Low_complexity 1 30 0 694 289 32 8 chr3 40437748 40438001 -177599157 + MIR SINE MIR 2 260 -2 995 190 28 36 chr3 40438910 40438950 -177598208 - L1M4 LINE L1 -1426 4720 4681 2711 232 13 13 chr3 40438950 40439575 -177597583 - MLT1E2 LTR MaLR -1 625 1 995 190 28 36 chr3 40439575 40439781 -177597377 - L1M4 LINE L1 -1465 4681 4476 779 206 6 0 chr3 40439855 40440015 -177597143 - AluSp SINE Alu 0 313 153 21 0 0 0 chr3 40440027 40440048 -177597110 + AT_rich Low_complexity Low_complexity 1 21 0 202 343 14 0 chr3 40440078 40440148 -177597010 + L2 LINE L2 3202 3272 0 950 149 56 0 chr3 40440335 40440496 -177596662 - AluSp SINE Alu -24 289 120 384 236 0 0 chr3 40440532 40440604 -177596554 + L2 LINE L2 3201 3272 0 2200 125 0 19 chr3 40441175 40441486 -177595672 - AluSx SINE Alu -7 305 1 237 310 14 0 chr3 40441724 40441795 -177595363 + L2 LINE L2 3187 3258 -55 270 0 0 0 chr3 40441972 40442002 -177595156 + (TG)n Simple_repeat Simple_repeat 2 31 0 1533 163 29 11 chr3 40442002 40442274 -177594884 - AluJb SINE Alu -35 277 1 255 319 41 18 chr3 40442616 40442785 -177594373 + L1ME4a LINE L1 5533 5705 -416 5352 184 30 66 chr3 40445746 40447254 -177589904 + Charlie1a DNA MER1_type 1 1454 -1 1620 141 89 26 chr3 40448471 40448819 -177588339 + THE1C LTR MaLR 1 370 -5 1152 238 99 23 chr3 40448829 40449533 -177587625 - L1MCc LINE L1 -3614 3327 2592 263 144 75 14 chr3 40449577 40449723 -177587435 + (TA)n Simple_repeat Simple_repeat 1 155 0 469 259 77 80 chr3 40449921 40450645 -177586513 - L1MCc LINE L1 -4801 2140 1167 316 301 139 42 chr3 40450838 40451147 -177586011 + L1ME4a LINE L1 5726 6064 -57 294 323 48 21 chr3 40451222 40451408 -177585750 + L3b LINE CR1 1219 1409 -174 431 331 53 24 chr3 40451558 40451727 -177585431 + L3b LINE CR1 1405 1578 -5 790 304 104 80 chr3 40453083 40454343 -177582815 + L2 LINE L2 1965 3251 -21 252 0 0 0 chr3 40454352 40454380 -177582778 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 228 327 256 14 chr3 40454515 40454738 -177582420 - L3 LINE CR1 -653 924 648 309 301 60 7 chr3 40455039 40455275 -177581883 + MLT1L LTR MaLR 318 615 0 421 323 30 24 chr3 40455291 40455455 -177581703 - L3 LINE CR1 -1007 570 406 812 266 60 22 chr3 40455796 40456250 -177580908 - MLT1J LTR MaLR -1 510 3 912 169 38 27 chr3 40456422 40456606 -177580552 + MER5A DNA MER1_type 2 187 -2 677 189 150 7 chr3 40457213 40457366 -177579792 - MER5A DNA MER1_type -4 185 11 418 180 100 159 chr3 40458533 40458635 -177578523 - MER106A DNA MER1_type 0 236 130 1388 121 60 21 chr3 40458635 40458697 -177578461 - L1MA7 LINE L1 -1 6290 6232 189 0 0 0 chr3 40458697 40458718 -177578440 + (CA)n Simple_repeat Simple_repeat 2 22 0 1388 121 60 21 chr3 40458718 40458936 -177578222 - L1MA7 LINE L1 -59 6232 5999 418 180 100 159 chr3 40458936 40459072 -177578086 - MER106A DNA MER1_type -106 130 12 6353 72 95 0 chr3 40459119 40460187 -177576971 - L1PA8 LINE L1 -2 6170 5058 694 317 24 43 chr3 40460187 40460556 -177576602 - MLT1I LTR MaLR -41 368 7 6384 179 8 11 chr3 40461079 40461914 -177575244 - L1PA14 LINE L1 0 6161 5326 2105 122 3 7 chr3 40461914 40462208 -177574950 - AluSq SINE Alu -20 293 1 6384 179 8 11 chr3 40462208 40463430 -177573728 - L1PA14 LINE L1 -835 5326 4102 1865 174 0 7 chr3 40463905 40464209 -177572949 - AluJb SINE Alu -8 304 3 1032 272 146 28 chr3 40464844 40465310 -177571848 - L2 LINE L2 -4 3309 2791 21 0 0 0 chr3 40465468 40465489 -177571669 + AT_rich Low_complexity Low_complexity 1 21 0 318 298 21 35 chr3 40465490 40465631 -177571527 - LTR16A1 LTR ERVL 0 457 319 189 0 0 0 chr3 40465828 40465849 -177571309 + (A)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr3 40466236 40466257 -177570901 + (A)n Simple_repeat Simple_repeat 1 21 0 572 266 0 19 chr3 40466440 40466594 -177570564 + MIR SINE MIR 102 252 -10 369 202 45 0 chr3 40467487 40467576 -177569582 + HAL1 LINE L1 48 140 -2367 248 250 75 90 chr3 40467597 40467809 -177569349 + HAL1 LINE L1 528 736 -1771 345 249 110 17 chr3 40467813 40467986 -177569172 + HAL1 LINE L1 2026 2214 -293 261 0 0 0 chr3 40468387 40468416 -177568742 + (CA)n Simple_repeat Simple_repeat 2 30 0 825 142 68 0 chr3 40468528 40468704 -177568454 - MER53 DNA DNA -1 188 1 422 212 8 34 chr3 40469289 40469407 -177567751 + L1ME2 LINE L1 6041 6155 -9 225 0 0 0 chr3 40470086 40470111 -177567047 + (A)n Simple_repeat Simple_repeat 1 25 0 204 207 52 17 chr3 40470502 40470560 -177566598 - MIR SINE MIR 0 262 203 1649 142 10 29 chr3 40470581 40470890 -177566268 + MER50 LTR ERV1 409 711 -23 1469 209 36 13 chr3 40471066 40471453 -177565705 - L1MB8 LINE L1 -6 6172 5777 3650 151 115 99 chr3 40472345 40472730 -177564428 + L1MC3 LINE L1 6706 7083 -702 350 281 10 0 chr3 40472730 40472826 -177564332 + MLT1F1 LTR MaLR 35 131 -436 3650 151 115 99 chr3 40472826 40473408 -177563750 + L1MC3 LINE L1 7083 7785 0 1456 119 194 4 chr3 40474036 40474288 -177562870 - AluSx SINE Alu -1 301 2 315 208 0 56 chr3 40474542 40474614 -177562544 + L2 LINE L2 3246 3313 0 382 337 16 67 chr3 40474964 40475157 -177562001 + MIR3 SINE MIR 20 202 -6 630 153 36 0 chr3 40475205 40475316 -177561842 - MIR SINE MIR -44 218 104 886 209 39 0 chr3 40475500 40475682 -177561476 + MER5A DNA MER1_type 1 189 0 856 141 0 8 chr3 40475865 40475993 -177561165 - FLAM_A SINE Alu -6 127 1 212 0 21 85 chr3 40476406 40476453 -177560705 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1633 180 13 36 chr3 40476890 40477196 -177559962 + AluJo SINE Alu 1 299 -13 2379 93 0 0 chr3 40477689 40477989 -177559169 + AluSg SINE Alu 1 300 -10 350 184 40 0 chr3 40478906 40478982 -177558176 - MER103 DNA DNA -81 85 7 1204 104 5 15 chr3 40479547 40479748 -177557410 + L1MA5A LINE L1 6099 6297 0 420 153 0 14 chr3 40479784 40479856 -177557302 + Tigger2 DNA MER2_type 1 71 -2647 226 196 143 0 chr3 40479856 40479912 -177557246 - MER2 DNA MER2_type 0 345 282 * 849 246 6 0 chr3 40479890 40480065 -177557093 - MER8 DNA MER2_type -63 176 1 284 205 43 120 chr3 40480254 40480371 -177556787 - MLT1H LTR MaLR 0 549 442 499 291 42 6 chr3 40481386 40481551 -177555607 - MER5B DNA MER1_type -6 172 2 1034 178 100 59 chr3 40481697 40482018 -177555140 + MER46C DNA MER2_type 1 334 -4 626 277 32 7 chr3 40482150 40482305 -177554853 - MER91A DNA MER1_type -36 160 2 2259 113 3 0 chr3 40482687 40482998 -177554160 + AluSq SINE Alu 1 312 -1 272 317 73 24 chr3 40483027 40483150 -177554008 - MIR SINE MIR -128 134 6 539 254 7 0 chr3 40483837 40483975 -177553183 + L1ME3A LINE L1 6027 6165 -5 494 243 196 31 chr3 40484098 40484415 -177552743 + MLT1J1 LTR MaLR 71 439 -7 353 309 43 32 chr3 40484426 40484614 -177552544 + MLT1J LTR MaLR 25 214 -297 1120 269 72 48 chr3 40485291 40485789 -177551369 - MLT1H LTR MaLR -39 510 1 1879 170 13 10 chr3 40486069 40486558 -177550600 + AluJb SINE Alu 1 312 0 389 155 19 29 chr3 40486558 40486661 -177550497 + GA-rich Low_complexity Low_complexity 3 104 0 1110 226 60 103 chr3 40486813 40487250 -177549908 + MLT1H LTR MaLR 19 436 -113 2574 233 45 50 chr3 40487255 40487927 -177549231 - L1MCa LINE L1 -2252 4174 3507 2124 119 57 23 chr3 40487927 40488279 -177548879 - THE1B LTR MaLR 0 364 1 2574 233 45 50 chr3 40488279 40488667 -177548491 - L1MCa LINE L1 -2919 3507 3119 225 0 0 0 chr3 40488667 40488692 -177548466 + (TA)n Simple_repeat Simple_repeat 2 26 0 447 52 0 0 chr3 40489446 40489504 -177547654 + (TA)n Simple_repeat Simple_repeat 2 59 0 2143 136 0 7 chr3 40489504 40489813 -177547345 - AluSq SINE Alu -6 307 1 3824 224 86 29 chr3 40489822 40491946 -177545212 - L1MCa LINE L1 -3321 3105 839 256 222 14 14 chr3 40492019 40492091 -177545067 + LTR33A LTR ERVL 452 523 0 39 0 0 0 chr3 40492470 40492509 -177544649 + AT_rich Low_complexity Low_complexity 1 39 0 563 123 36 19 chr3 40492525 40492634 -177544524 + L1MC3 LINE L1 5744 5856 -488 2073 137 0 0 chr3 40492634 40492927 -177544231 + AluSq SINE Alu 1 293 -20 563 123 36 19 chr3 40492927 40492941 -177544217 + L1MC3 LINE L1 5856 5868 -476 536 234 30 60 chr3 40493657 40493824 -177543334 - LTR67 LTR ERVL -40 517 356 1459 187 26 32 chr3 40493896 40494296 -177542862 - MLT2D LTR ERVL -48 416 3 1095 241 17 4 chr3 40494445 40494816 -177542342 - LTR33 LTR ERVL -114 407 6 413 286 12 37 chr3 40494823 40494984 -177542174 - LTR67 LTR ERVL -394 163 7 4766 149 28 61 chr3 40495509 40496329 -177540829 - MER54B LTR ERVL 0 793 1 884 287 41 60 chr3 40496437 40496912 -177540246 + Charlie8 DNA MER1_type 1 460 -1957 416 313 36 0 chr3 40497157 40497269 -177539889 - L2 LINE L2 -4 3268 3153 867 275 24 9 chr3 40497481 40497775 -177539383 - MLT1I LTR MaLR -3 406 63 1995 229 32 75 chr3 40498956 40499579 -177537579 + LTR8 LTR ERV1 81 676 -15 236 305 37 12 chr3 40500016 40500098 -177537060 - L2 LINE L2 -58 3255 3172 2377 104 31 0 chr3 40500195 40500550 -177536608 + L1MA4 LINE L1 5663 6028 -272 982 140 0 12 chr3 40500551 40500715 -177536443 + L1MA4 LINE L1 6128 6289 -11 395 264 100 0 chr3 40503500 40503610 -177533548 - MLT1E2 LTR MaLR -38 588 468 1114 109 126 0 chr3 40503610 40503793 -177533365 - MER47A DNA MER2_type -130 236 31 345 258 77 67 chr3 40503858 40504157 -177533001 - L1ME4a LINE L1 -2 6119 5818 279 188 188 20 chr3 40504185 40504286 -177532872 - L1ME4a LINE L1 -12 6109 5992 468 241 116 55 chr3 40504416 40504615 -177532543 - L1ME4a LINE L1 -436 5685 5475 366 23 0 0 chr3 40505702 40505745 -177531413 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 186 0 0 chr3 40506496 40506539 -177530619 + T-rich Low_complexity Low_complexity 1 43 0 964 256 152 35 chr3 40506946 40507439 -177529719 - MLT1G LTR MaLR -2 588 38 416 240 50 25 chr3 40507501 40507622 -177529536 + LTR16A1 LTR ERVL 334 457 0 470 237 7 72 chr3 40507808 40507947 -177529211 - MER5B DNA MER1_type -48 130 1 2248 108 3 0 chr3 40507951 40508256 -177528902 + AluSc SINE Alu 1 306 -3 569 177 54 68 chr3 40509218 40509365 -177527793 + MER104 DNA Tc2 36 180 0 216 0 0 0 chr3 40509627 40509651 -177527507 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1094 329 18 37 chr3 40509651 40509724 -177527434 + L1PB4 LINE L1 11 84 -6765 2272 93 0 0 chr3 40509724 40510015 -177527143 - AluSc SINE Alu -18 291 1 1094 329 18 37 chr3 40510015 40510431 -177526727 + L1PB4 LINE L1 84 491 -6358 9804 207 40 26 chr3 40510717 40515119 -177522039 + L1PB4 LINE L1 651 5116 -1732 223 263 0 25 chr3 40516351 40516431 -177520727 + A-rich Low_complexity Low_complexity 5 82 0 1683 149 78 0 chr3 40517566 40517835 -177519323 - AluSg SINE Alu -20 290 1 22 35 0 0 chr3 40519388 40519417 -177517741 + AT_rich Low_complexity Low_complexity 1 29 0 194 0 0 37 chr3 40519506 40519533 -177517625 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 229 65 0 0 chr3 40519867 40519913 -177517245 - LTR66 LTR ERVL -171 439 394 4698 174 15 13 chr3 40519942 40520883 -177516275 + L1PB4 LINE L1 5097 6039 -809 237 86 0 0 chr3 40520888 40520923 -177516235 + L1MA3 LINE L1 6271 6305 0 1688 154 43 14 chr3 40520926 40521205 -177515953 + AluSx SINE Alu 1 287 -25 2009 100 0 0 chr3 40521239 40521499 -177515659 + AluSq SINE Alu 1 260 -53 376 169 0 0 chr3 40521500 40521565 -177515593 + AluSp/q SINE Alu 232 296 -7 3849 170 54 37 chr3 40521580 40522424 -177514734 + L1PB4 LINE L1 5999 6853 -5 369 281 116 17 chr3 40522568 40522723 -177514435 + MER5A DNA MER1_type 7 189 0 2122 218 42 44 chr3 40523213 40523252 -177513906 + MLT1D LTR MaLR 1 39 -466 2115 154 61 6 chr3 40523252 40523595 -177513563 - MLT1A1 LTR MaLR -3 362 1 2122 218 42 44 chr3 40523595 40524059 -177513099 + MLT1D LTR MaLR 39 503 -2 336 285 106 50 chr3 40524692 40524871 -177512287 + LTR50 LTR ERVL 17 205 -590 251 192 39 0 chr3 40525143 40525195 -177511963 + LTR33A LTR ERVL 468 521 -2 448 301 38 48 chr3 40525404 40525613 -177511545 - LTR16A1 LTR ERVL -5 452 246 188 177 290 0 chr3 40525892 40525954 -177511204 - L2 LINE L2 -1 3271 3192 1256 217 54 28 chr3 40526320 40526361 -177510797 - MLT2E LTR ERVL -14 614 576 1911 174 80 21 chr3 40526361 40526735 -177510423 + MSTD LTR MaLR 1 396 0 1256 217 54 28 chr3 40526735 40527195 -177509963 - MLT2E LTR ERVL -52 576 1 860 226 65 37 chr3 40527597 40527814 -177509344 + MIR SINE MIR 2 224 -38 632 171 147 59 chr3 40527958 40528128 -177509030 - MER3 DNA MER1_type -24 185 1 388 209 33 27 chr3 40528751 40528873 -177508285 + L1MC4a LINE L1 5484 5603 -518 1361 217 37 167 chr3 40528903 40529740 -177507418 + MER21B LTR ERV1 6 733 -130 748 256 0 50 chr3 40529722 40529921 -177507237 + MER63A DNA MER1_type 17 205 -5 * 796 296 60 28 chr3 40529930 40530347 -177506811 + L1MC4a LINE L1 5603 6038 -83 960 243 63 28 chr3 40530637 40530921 -177506237 - MER102a DNA MER1_type -2 328 35 223 286 0 0 chr3 40532226 40532282 -177504876 - MIR SINE MIR -108 154 99 801 253 50 17 chr3 40532862 40533103 -177504055 - L2 LINE L2 0 3313 3065 1278 223 32 72 chr3 40533117 40533493 -177503665 - MLT1A2 LTR MaLR -13 361 1 2194 230 12 68 chr3 40533527 40534101 -177503057 + MLT1F LTR MaLR 1 542 0 403 332 68 23 chr3 40534103 40534323 -177502835 - L2 LINE L2 -280 3033 2804 2397 268 47 17 chr3 40534452 40535408 -177501750 + L2 LINE L2 2177 3103 -210 185 62 0 31 chr3 40535408 40535440 -177501718 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2301 135 33 28 chr3 40535450 40535812 -177501346 + THE1B LTR MaLR 1 364 0 2397 268 47 17 chr3 40535812 40535947 -177501211 + L2 LINE L2 3111 3313 0 1346 68 0 11 chr3 40536856 40537033 -177500125 - AluY SINE Alu -3 308 134 21 0 0 0 chr3 40537620 40537641 -177499517 + AT_rich Low_complexity Low_complexity 1 21 0 757 272 41 66 chr3 40537889 40538451 -177498707 + L1M4 LINE L1 4802 5349 -797 277 244 100 11 chr3 40538889 40538979 -177498179 + MLT1K LTR MaLR 26 123 -465 530 250 87 53 chr3 40539152 40539360 -177497798 + MLT1K LTR MaLR 374 588 0 732 304 8 4 chr3 40540410 40540653 -177496505 + MIR SINE MIR 19 262 0 626 305 16 5 chr3 40541268 40541458 -177495700 - MIR SINE MIR -6 256 65 260 295 74 0 chr3 40541746 40541841 -177495317 - MIR SINE MIR -59 203 102 274 305 30 23 chr3 40541931 40542062 -177495096 + Charlie8 DNA MER1_type 89 220 -2197 735 221 111 42 chr3 40542471 40542878 -177494280 + MLT1J LTR MaLR 27 428 -22 417 309 149 25 chr3 40543219 40543695 -177493463 + L2 LINE L2 1599 2133 -1181 2155 139 10 0 chr3 40743768 40744071 -177293087 - AluSx SINE Alu -6 306 1 859 227 82 82 chr3 40744079 40744271 -177292887 - L1M4 LINE L1 -869 5277 5087 1786 152 10 33 chr3 40744271 40744573 -177292585 + AluJb SINE Alu 1 295 -17 859 227 82 82 chr3 40744573 40744923 -177292235 - L1M4 LINE L1 -1059 5087 4562 2290 106 0 0 chr3 40744937 40745238 -177291920 - AluSg SINE Alu -9 301 1 612 300 85 27 chr3 40745238 40745461 -177291697 - LTR16C LTR ERVL -167 324 89 292 265 148 75 chr3 40746039 40746264 -177290894 - L1ME4a LINE L1 0 6121 5914 2032 128 3 31 chr3 40746264 40746585 -177290573 - AluSq SINE Alu -1 312 1 292 265 148 75 chr3 40746585 40746838 -177290320 - L1ME4a LINE L1 -207 5914 5608 295 275 18 28 chr3 40746960 40747069 -177290089 - MIR3 SINE MIR -5 203 96 2482 64 7 0 chr3 40747463 40747760 -177289398 - AluSp SINE Alu -14 299 1 225 361 24 0 chr3 40747870 40747953 -177289205 + LTR16C LTR ERVL 49 133 -358 427 276 43 22 chr3 40748104 40748289 -177288869 + L1MEc LINE L1 855 1043 -5353 313 188 71 24 chr3 40748379 40748464 -177288694 - MLT1J LTR MaLR -7 504 416 760 124 0 0 chr3 40748791 40748896 -177288262 + AluJo SINE Alu 35 139 -173 1831 164 3 3 chr3 40748898 40749191 -177287967 + AluSx SINE Alu 7 299 -13 2307 98 0 3 chr3 40749193 40749498 -177287660 + AluY SINE Alu 1 304 -7 1302 244 45 6 chr3 40749705 40750041 -177287117 - L1ME3 LINE L1 -30 6132 5784 646 210 8 0 chr3 40750042 40750161 -177286997 - FLAM_C SINE Alu -13 120 1 612 258 72 16 chr3 40750170 40750407 -177286751 - MLT1G1 LTR MaLR -377 213 3 362 269 88 31 chr3 40750417 40750610 -177286548 + L2 LINE L2 3105 3308 -5 2289 121 0 0 chr3 40750624 40750929 -177286229 + AluSq SINE Alu 1 305 -8 1468 122 0 108 chr3 40751140 40751436 -177285722 - AluJb SINE Alu -11 301 38 408 195 80 44 chr3 40751797 40751910 -177285248 - L1ME4a LINE L1 -33 6088 5972 561 247 93 41 chr3 40752272 40752730 -177284428 - MLT1H1 LTR MaLR -12 543 3 184 309 32 43 chr3 40752739 40752833 -177284325 + MIR SINE MIR 49 141 -121 274 228 114 66 chr3 40753517 40753602 -177283556 + L1M4 LINE L1 4275 4354 -1792 2398 79 3 7 chr3 40753602 40753907 -177283251 + AluSq SINE Alu 1 304 -9 274 228 114 66 chr3 40753907 40754093 -177283065 + L1M4 LINE L1 4354 4559 -1587 2188 106 7 3 chr3 40754097 40754400 -177282758 + AluSp SINE Alu 1 304 -9 381 274 28 0 chr3 40754481 40754587 -177282571 + L1M4 LINE L1 4001 4109 -2037 2265 122 3 0 chr3 40754968 40755279 -177281879 - AluSx SINE Alu 0 312 1 2254 100 0 10 chr3 40756706 40757005 -177280153 + AluSc SINE Alu 1 296 -13 1104 242 132 36 chr3 40757060 40757477 -177279681 - LTR16A1 LTR ERVL 0 457 1 269 149 0 21 chr3 40757733 40757780 -177279378 + MER75 DNA T2_type 459 504 0 444 256 40 88 chr3 40757834 40758061 -177279097 + HAL1 LINE L1 1881 2096 -411 22 35 0 0 chr3 40758097 40758126 -177279032 + AT_rich Low_complexity Low_complexity 1 29 0 466 281 46 78 chr3 40758194 40758411 -177278747 + LTR33A LTR ERVL 1 210 -313 1182 169 33 19 chr3 40758498 40758711 -177278447 - MER20 DNA MER1_type 0 219 4 2293 89 6 43 chr3 40758718 40759042 -177278116 + AluSx SINE Alu 1 312 0 418 287 102 0 chr3 40759146 40759362 -177277796 + HAL1 LINE L1 2270 2507 0 2061 103 31 0 chr3 40759368 40759660 -177277498 + AluY SINE Alu 1 301 -10 417 247 19 19 chr3 40760348 40760506 -177276652 + (TA)n Simple_repeat Simple_repeat 2 159 0 2220 100 19 13 chr3 40760599 40760910 -177276248 + AluSq SINE Alu 1 313 0 339 271 98 51 chr3 40760963 40761177 -177275981 - MLT1J LTR MaLR 0 511 288 301 172 0 0 chr3 40761173 40761231 -177275927 + Alu SINE Alu 242 299 -1 * 1548 197 29 0 chr3 40761483 40761784 -177275374 + AluJo SINE Alu 1 309 0 702 209 0 0 chr3 40761784 40761899 -177275259 - AluJo/FLAM SINE Alu -184 118 4 246 217 78 39 chr3 40761912 40762025 -177275133 - MLT1J LTR MaLR -310 201 47 954 200 5 25 chr3 40762029 40762229 -177274929 + L1M4 LINE L1 16 211 -6331 2667 212 68 27 chr3 40762302 40762795 -177274363 + L1M4 LINE L1 2186 2658 -3986 272 70 23 0 chr3 40762795 40762838 -177274320 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2503 62 6 3 chr3 40762838 40763159 -177273999 - L1PB1 LINE L1 -10 6141 5820 2667 212 68 27 chr3 40763159 40763666 -177273492 + L1M4 LINE L1 2657 3241 -3403 433 172 21 32 chr3 40765058 40765151 -177272007 - FLAM_A SINE Alu -16 126 35 2425 216 20 5 chr3 40765163 40765802 -177271356 + L1M4 LINE L1 3253 3901 -2743 456 339 17 0 chr3 40766180 40766354 -177270804 + L2 LINE L2 2184 2360 -954 730 202 16 0 chr3 40766377 40766506 -177270652 - FLAM_A SINE Alu -2 131 1 1401 146 0 24 chr3 40766543 40766756 -177270402 + AluJb SINE Alu 1 208 -104 2926 179 29 13 chr3 40766756 40767352 -177269806 - L1MB5 LINE L1 -217 5957 5353 654 141 0 161 chr3 40767387 40767436 -177269722 - FLAM_C SINE Alu -186 126 71 2293 76 40 3 chr3 40767436 40767737 -177269421 - AluSx SINE Alu 0 312 1 654 141 0 161 chr3 40767737 40767836 -177269322 - FLAM_C SINE Alu -241 71 2 1662 200 20 55 chr3 40767837 40768296 -177268862 - L1MB5 LINE L1 -780 5366 4924 804 134 108 13 chr3 40768452 40768609 -177268549 - L1MB8 LINE L1 0 6178 6007 6606 163 75 55 chr3 40768609 40770272 -177266886 + pTR5 LTR ERV1 743 2438 0 365 194 48 48 chr3 40770278 40770381 -177266777 - L1MB8 LINE L1 -177 6001 5899 2974 254 39 21 chr3 40770408 40771176 -177265982 - MER21B LTR ERV1 -68 795 14 414 169 0 14 chr3 40771182 40771253 -177265905 - L1MB8 LINE L1 -267 5911 5842 1779 98 4 0 chr3 40771256 40771481 -177265677 + AluSq SINE Alu 10 235 -78 672 101 0 0 chr3 40771481 40771570 -177265588 + AluY SINE Alu 194 282 -29 1201 93 0 0 chr3 40771620 40771771 -177265387 - AluSq SINE Alu -26 287 137 349 227 45 11 chr3 40771772 40771860 -177265298 + MER39 LTR ERV1 613 703 -4 1743 139 0 62 chr3 40772140 40772255 -177264903 + AluJb SINE Alu 25 146 -166 2232 110 3 3 chr3 40772255 40772556 -177264602 + AluSx SINE Alu 1 301 -11 1743 139 0 62 chr3 40772556 40772728 -177264430 + AluJb SINE Alu 146 294 -18 319 263 24 102 chr3 40773284 40773607 -177263551 + MLT1J2 LTR MaLR 116 450 0 371 274 33 26 chr3 40774169 40774322 -177262836 + HAL1b LINE L1 1187 1340 -8 2257 106 0 29 chr3 40774452 40774763 -177262395 - AluSg SINE Alu -8 302 1 645 269 42 42 chr3 40774949 40775209 -177261949 - MER102a DNA MER1_type -5 325 66 2368 88 0 3 chr3 40775216 40775510 -177261648 + AluSc SINE Alu 2 294 -15 260 194 32 0 chr3 40775879 40775941 -177261217 - MIR SINE MIR -36 226 163 3055 203 10 42 chr3 40775942 40776156 -177261002 - L1M4 LINE L1 -1055 5091 4872 2206 138 0 0 chr3 40776156 40776460 -177260698 + AluSx SINE Alu 1 304 -8 3055 203 10 42 chr3 40776460 40776566 -177260592 - L1M4 LINE L1 -1274 4872 4764 2212 82 0 34 chr3 40776566 40776882 -177260276 - AluY SINE Alu 0 306 1 3055 203 10 42 chr3 40776882 40777353 -177259805 - L1M4 LINE L1 -1382 4764 4323 324 253 137 7 chr3 40777338 40777484 -177259674 - L1M4 LINE L1 -2438 3708 3544 * 2308 123 0 0 chr3 40777585 40777894 -177259264 - AluSx SINE Alu -3 309 1 310 261 43 0 chr3 40778494 40778586 -177258572 - LTR67 LTR ERVL -363 194 99 297 311 108 29 chr3 40778649 40778928 -177258230 + L2 LINE L2 2763 3060 -212 2204 112 3 3 chr3 40779252 40779548 -177257610 + AluSx SINE Alu 1 296 -16 247 353 10 39 chr3 40780404 40780506 -177256652 - L3 LINE CR1 -12 1565 1467 2412 69 3 13 chr3 40780910 40781216 -177255942 + AluSp SINE Alu 11 313 0 338 316 75 26 chr3 40782398 40782626 -177254532 - MIR SINE MIR -12 250 12 253 236 34 0 chr3 40782800 40782889 -177254269 + CT-rich Low_complexity Low_complexity 1 92 0 865 90 16 64 chr3 40782890 40782994 -177254164 + (TTCC)n Simple_repeat Simple_repeat 2 95 -85 1688 129 66 0 chr3 40782994 40783235 -177253923 - AluSx SINE Alu -55 257 1 865 90 16 64 chr3 40783235 40783318 -177253840 + (TTCC)n Simple_repeat Simple_repeat 95 180 0 341 226 97 0 chr3 40783393 40783486 -177253672 + MER92B LTR ERV1 1 102 -534 2379 95 13 0 chr3 40783504 40783808 -177253350 - AluSp SINE Alu -5 308 1 881 112 132 71 chr3 40783848 40784045 -177253113 - MER67C LTR ERV1 -248 462 254 353 178 178 17 chr3 40784070 40784122 -177253036 - MER66B LTR ERV1 -52 434 392 2296 98 0 3 chr3 40784122 40784418 -177252740 + AluSq SINE Alu 1 295 -18 353 178 178 17 chr3 40784418 40784483 -177252675 - MER66B LTR ERV1 -94 392 298 291 175 0 0 chr3 40784488 40784545 -177252613 + CT-rich Low_complexity Low_complexity 2 58 0 1015 175 26 42 chr3 40784555 40784744 -177252414 - AluJo SINE Alu -126 186 1 4821 153 58 2 chr3 40784744 40785547 -177251611 + MER6 DNA MER2_type 14 861 -4 404 32 0 81 chr3 40785572 40785634 -177251524 + MLT2B1 LTR ERVL 464 520 0 346 213 0 83 chr3 40785636 40785744 -177251414 + MER5A DNA MER1_type 13 111 -78 184 309 32 43 chr3 40786765 40786859 -177250299 - MIR SINE MIR -121 141 49 561 244 102 43 chr3 40786868 40787326 -177249832 + MLT1H1 LTR MaLR 3 543 -12 408 195 80 44 chr3 40787688 40787801 -177249357 + L1ME4a LINE L1 5972 6088 -33 1468 122 0 108 chr3 40788162 40788458 -177248700 + AluJb SINE Alu 38 301 -11 2244 122 3 0 chr3 40788669 40788973 -177248185 - AluSq SINE Alu -8 305 1 362 269 88 31 chr3 40788987 40789180 -177247978 - L2 LINE L2 -5 3308 3105 612 258 72 16 chr3 40789190 40789427 -177247731 + MLT1G1 LTR MaLR 3 213 -377 673 202 8 0 chr3 40789436 40789555 -177247603 + FLAM_C SINE Alu 1 120 -13 1302 244 45 6 chr3 40789556 40789892 -177247266 + L1ME3 LINE L1 5784 6132 -30 2307 98 0 3 chr3 40790099 40790404 -177246754 - AluY SINE Alu -7 304 1 1831 164 3 3 chr3 40790406 40790699 -177246459 - AluSx SINE Alu -13 299 7 760 124 0 0 chr3 40790701 40790806 -177246352 - AluJo SINE Alu -173 139 35 313 188 71 24 chr3 40791133 40791218 -177245940 + MLT1J LTR MaLR 416 504 -7 427 276 43 22 chr3 40791308 40791493 -177245665 - L1MEc LINE L1 -5353 1043 855 225 361 24 0 chr3 40791644 40791727 -177245431 - LTR16C LTR ERVL -358 133 49 2482 64 7 0 chr3 40791837 40792134 -177245024 + AluSp SINE Alu 1 299 -14 295 275 18 28 chr3 40792528 40792637 -177244521 + MIR3 SINE MIR 96 203 -5 292 265 148 75 chr3 40792759 40793012 -177244146 + L1ME4a LINE L1 5608 5841 -280 2032 128 3 31 chr3 40793012 40793333 -177243825 + AluSq SINE Alu 1 312 -1 292 265 148 75 chr3 40793333 40793558 -177243600 + L1ME4a LINE L1 5841 6121 0 1071 282 92 34 chr3 40794136 40794359 -177242799 + LTR16C LTR ERVL 89 344 -147 2117 121 13 3 chr3 40794359 40794666 -177242492 + AluSx SINE Alu 1 310 -2 1071 282 92 34 chr3 40794666 40794821 -177242337 + LTR16C LTR ERVL 344 489 -2 663 266 44 18 chr3 40795434 40795663 -177241495 + L1MA9 LINE L1 6040 6274 -38 1535 170 0 24 chr3 40795675 40795997 -177241161 + AluSx SINE Alu 1 315 0 477 84 0 0 chr3 40796722 40796793 -177240365 + (GGGGA)n Simple_repeat Simple_repeat 3 73 0 1227 111 106 0 chr3 40796795 40797003 -177240155 + L1PA14 LINE L1 5932 6161 0 601 178 20 0 chr3 40797068 40797169 -177239989 - MER94 DNA DNA -29 105 3 343 282 169 0 chr3 40797384 40797508 -177239650 - MIR3 SINE MIR -6 202 58 378 239 0 11 chr3 40797530 40797618 -177239540 + MER5A DNA MER1_type 9 95 -94 1827 209 36 58 chr3 40797635 40798103 -177239055 - LTR40c LTR ERVL -5 460 3 2371 68 0 0 chr3 40798127 40798405 -177238753 - AluSq SINE Alu -17 296 19 1458 150 44 4 chr3 40798406 40798633 -177238525 - AluSx SINE Alu -76 236 1 181 0 69 0 chr3 40798652 40798681 -177238477 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 492 204 232 0 chr3 40799355 40799497 -177237661 + MER5A DNA MER1_type 9 183 -6 1144 289 48 50 chr3 40799643 40800099 -177237059 + MLT1J LTR MaLR 24 478 -33 405 266 50 7 chr3 40800688 40800827 -177236331 - MIR SINE MIR -50 212 68 304 285 124 29 chr3 40801047 40801184 -177235974 - MIR3 SINE MIR -23 185 36 1830 151 14 0 chr3 40801487 40801765 -177235393 - AluJb SINE Alu -7 305 24 25 31 0 0 chr3 40802036 40802068 -177235090 + AT_rich Low_complexity Low_complexity 1 32 0 1500 159 32 62 chr3 40802073 40802381 -177234777 + AluJo SINE Alu 1 299 -13 270 310 20 41 chr3 40803037 40803234 -177233924 + L1ME3 LINE L1 4243 4435 -1711 418 298 28 33 chr3 40803244 40803459 -177233699 + L1ME3 LINE L1 5735 5948 -214 1858 151 7 0 chr3 40803757 40804031 -177233127 + AluJb SINE Alu 5 283 -29 204 40 0 0 chr3 40804031 40804056 -177233102 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 212 214 0 0 chr3 40804287 40804329 -177232829 + MIR3 SINE MIR 156 197 -11 24 32 0 0 chr3 40804786 40804817 -177232341 + AT_rich Low_complexity Low_complexity 1 31 0 2130 97 36 0 chr3 40804818 40805097 -177232061 - AluSg SINE Alu -21 289 1 850 206 60 14 chr3 40805097 40805315 -177231843 + L1MC5 LINE L1 7698 7925 -36 315 0 0 0 chr3 40805638 40805673 -177231485 + (CA)n Simple_repeat Simple_repeat 2 36 0 2263 89 0 10 chr3 40805675 40805966 -177231192 - AluSx SINE Alu -24 288 1 213 244 0 0 chr3 40805973 40806014 -177231144 - L2 LINE L2 -17 3296 3256 335 252 101 8 chr3 40806206 40806275 -177230883 + MER5A DNA MER1_type 45 106 -83 1858 151 22 26 chr3 40806275 40806586 -177230572 - AluSx SINE Alu -2 310 1 335 252 101 8 chr3 40806586 40806635 -177230523 + MER5A DNA MER1_type 106 174 -15 235 235 71 12 chr3 40806783 40806868 -177230290 - MIR SINE MIR -124 138 49 2319 99 0 0 chr3 40807022 40807314 -177229844 + AluSq SINE Alu 1 292 -21 356 177 20 7 chr3 40807330 40807477 -177229681 + (TA)n Simple_repeat Simple_repeat 2 150 0 1855 167 3 6 chr3 40808722 40809033 -177228125 + AluSq SINE Alu 4 313 0 1734 185 3 0 chr3 40809150 40809442 -177227716 - AluSx SINE Alu -17 295 3 4496 133 63 51 chr3 40809525 40810796 -177226362 - pTR5 LTR ERV1 -125 2212 6 241 313 0 48 chr3 40811087 40811170 -177225988 + L3 LINE CR1 1480 1558 -19 1511 166 6 113 chr3 40811956 40812075 -177225083 + AluJo SINE Alu 1 131 -171 262 0 53 0 chr3 40812075 40812113 -177225045 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1511 166 6 113 chr3 40812113 40812319 -177224839 + AluJo SINE Alu 131 291 -11 806 218 0 6 chr3 40812321 40812477 -177224681 + FRAM SINE Alu 1 154 -22 206 238 0 0 chr3 40812559 40812601 -177224557 + (CA)n Simple_repeat Simple_repeat 2 43 0 4417 253 68 38 chr3 40812651 40814170 -177222988 - L2 LINE L2 0 3313 1733 1915 123 39 0 chr3 40814170 40814454 -177222704 + AluSx SINE Alu 1 295 -17 4417 253 68 38 chr3 40814454 40814762 -177222396 - L2 LINE L2 -1580 1733 1436 777 237 19 14 chr3 40814762 40814977 -177222181 + HAL1 LINE L1 1431 1646 -861 791 224 141 9 chr3 40814984 40815400 -177221758 + LTR33 LTR ERVL 1 521 0 250 257 43 14 chr3 40815402 40815472 -177221686 + HAL1 LINE L1 1652 1723 -784 726 271 101 49 chr3 40815475 40815713 -177221445 + HAL1 LINE L1 1775 2036 -471 2457 93 0 0 chr3 40815713 40816025 -177221133 + AluSx SINE Alu 1 312 0 726 271 101 49 chr3 40816025 40816114 -177221044 + HAL1 LINE L1 2036 2119 -388 186 238 0 0 chr3 40816340 40816382 -177220776 + MIR SINE MIR 81 122 -140 214 114 29 0 chr3 40816411 40816446 -177220712 + L2 LINE L2 3219 3254 -18 216 0 0 0 chr3 40816866 40816890 -177220268 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1719 146 32 0 chr3 40816892 40817145 -177220013 - AluJb SINE Alu -32 280 20 815 256 44 24 chr3 40817236 40817486 -177219672 - MIR SINE MIR -1 261 7 33 25 0 0 chr3 40818459 40818499 -177218659 + GC_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 40819896 40819916 -177217242 + (TTG)n Simple_repeat Simple_repeat 2 21 0 625 226 47 42 chr3 40820111 40820301 -177216857 + MIR SINE MIR 14 204 -58 21 71 0 0 chr3 40820448 40820490 -177216668 + AT_rich Low_complexity Low_complexity 1 42 0 1865 162 7 3 chr3 40821233 40821366 -177215792 + AluJb SINE Alu 1 132 -180 2363 97 3 0 chr3 40821366 40821665 -177215493 + AluSx SINE Alu 1 300 -12 1865 162 7 3 chr3 40821665 40821850 -177215308 + AluJb SINE Alu 132 312 0 208 246 15 31 chr3 40822101 40822166 -177214992 - MIR SINE MIR -119 143 80 1993 103 48 0 chr3 40822597 40822899 -177214259 - AluSp SINE Alu 0 316 2 267 204 40 164 chr3 40823053 40823086 -177214072 - MIR SINE MIR -114 148 112 1888 166 0 10 chr3 40823086 40823382 -177213776 - AluJb SINE Alu -19 293 1 267 204 40 164 chr3 40823382 40823462 -177213696 - MIR SINE MIR -150 112 56 2117 112 14 0 chr3 40823462 40823758 -177213400 + AluSx SINE Alu 1 300 -12 267 204 40 164 chr3 40823758 40823795 -177213363 - MIR SINE MIR -206 56 16 206 292 108 8 chr3 40824040 40824160 -177212998 + MIR3 SINE MIR 76 207 -1 1241 200 9 5 chr3 40824797 40825017 -177212141 - MER58A DNA MER1_type -3 221 1 1420 176 3 48 chr3 40825017 40825344 -177211814 - AluJo SINE Alu 0 320 7 245 229 0 0 chr3 40825429 40825477 -177211681 + L2 LINE L2 3264 3311 -2 214 208 83 104 chr3 40825754 40825777 -177211381 + MIR3 SINE MIR 66 88 -120 2177 129 0 3 chr3 40825777 40826079 -177211079 + AluSx SINE Alu 1 301 -11 214 208 83 104 chr3 40826079 40826151 -177211007 + MIR3 SINE MIR 88 159 -49 315 288 38 38 chr3 40826174 40826306 -177210852 - L2 LINE L2 0 3272 3141 231 198 63 72 chr3 40826669 40826742 -177210416 - L1ME4a LINE L1 -5 6116 6043 1442 191 62 17 chr3 40826742 40827030 -177210128 + AluJo SINE Alu 1 301 -11 231 198 63 72 chr3 40827030 40827067 -177210091 - L1ME4a LINE L1 -78 6043 6007 1640 156 45 14 chr3 40827074 40827362 -177209796 - AluJo SINE Alu -1 311 15 254 175 0 0 chr3 40827630 40827670 -177209488 - L1ME4a LINE L1 -462 5659 5620 2223 110 0 3 chr3 40827721 40828022 -177209136 - AluY SINE Alu -11 300 1 2358 93 6 0 chr3 40828336 40828647 -177208511 - AluSp SINE Alu 0 313 1 2128 117 7 0 chr3 40828917 40829216 -177207942 - AluSx SINE Alu -11 301 1 1742 161 18 4 chr3 40829830 40830109 -177207049 + AluJb SINE Alu 1 283 -29 762 180 31 0 chr3 40830182 40830310 -177206848 + FLAM_A SINE Alu 1 132 -1 2442 71 3 3 chr3 40830511 40830808 -177206350 - AluSp SINE Alu -16 297 1 234 91 0 0 chr3 40830930 40830963 -177206195 + (T)n Simple_repeat Simple_repeat 1 33 0 515 182 136 0 chr3 40830963 40831073 -177206085 + MER58C DNA MER1_type 79 203 -12 1374 135 5 5 chr3 40831136 40831336 -177205822 - AluJb SINE Alu -27 285 86 2232 109 0 25 chr3 40831817 40832137 -177205021 - AluSq SINE Alu 0 313 2 1548 208 40 0 chr3 40832538 40832836 -177204322 + AluJo SINE Alu 1 310 -2 284 315 116 28 chr3 40833090 40833341 -177203817 - L2 LINE L2 -181 3091 2819 448 239 56 46 chr3 40833432 40833629 -177203529 - L1MC4 LINE L1 -15 8027 7829 2208 112 3 0 chr3 40834213 40834508 -177202650 + AluSx SINE Alu 11 306 -6 228 244 179 0 chr3 40834820 40834898 -177202260 + MIR3 SINE MIR 114 205 -3 389 204 111 0 chr3 40835540 40835648 -177201510 + MIR SINE MIR 60 179 -83 1465 201 0 7 chr3 40836018 40836291 -177200867 - AluJb SINE Alu -12 300 30 2205 67 34 0 chr3 40836377 40836679 -177200479 + AluSc SINE Alu 1 311 0 303 261 169 15 chr3 40836737 40836867 -177200291 - L2 LINE L2 -52 3261 3112 588 191 27 0 chr3 40836921 40837031 -177200127 + FLAM_C SINE Alu 10 122 -21 214 192 19 0 chr3 40837077 40837129 -177200029 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 429 292 44 0 chr3 40837129 40837266 -177199892 - L2 LINE L2 -250 3063 2921 207 311 169 24 chr3 40837323 40837619 -177199539 - L2 LINE L2 -961 2353 2015 633 175 35 0 chr3 40838412 40838526 -177198632 - FLAM_C SINE Alu -15 118 1 926 179 19 0 chr3 40838530 40838692 -177198466 + MER5A DNA MER1_type 2 166 -23 2423 88 3 0 chr3 40838915 40839222 -177197936 - AluSp SINE Alu -5 308 1 404 138 126 0 chr3 40839553 40839640 -177197518 - L1MA8 LINE L1 -2 6289 6192 25 0 0 0 chr3 40840021 40840046 -177197112 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 40840307 40840332 -177196826 + AT_rich Low_complexity Low_complexity 1 25 0 2427 144 35 56 chr3 40840489 40840907 -177196251 - L1MA8 LINE L1 0 6291 5885 1864 135 39 30 chr3 40840907 40841241 -177195917 - MER1B DNA MER1_type 0 337 1 2427 144 35 56 chr3 40841241 40841342 -177195816 - L1MA8 LINE L1 -406 5885 5783 219 241 25 25 chr3 40841362 40841441 -177195717 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 867 103 34 62 chr3 40841441 40841587 -177195571 - L1MA8 LINE L1 -502 5789 5648 2150 97 4 4 chr3 40842088 40842388 -177194770 - AluSg SINE Alu 0 300 1 234 229 131 16 chr3 40842640 40842701 -177194457 + MLT1K LTR MaLR 182 249 -339 2321 115 0 0 chr3 40842921 40843225 -177193933 - AluSx SINE Alu -8 304 1 251 203 31 16 chr3 40843269 40843333 -177193825 + MLT1K LTR MaLR 514 578 -10 1914 89 100 4 chr3 40844592 40844862 -177192296 - AluSg SINE Alu -14 296 1 1693 159 23 27 chr3 40845267 40845568 -177191590 - AluJb SINE Alu -12 300 1 2344 85 0 29 chr3 40845645 40845961 -177191197 + AluSg1 SINE Alu 1 298 -11 758 218 10 42 chr3 40846186 40846379 -177190779 + MER5A DNA MER1_type 2 188 -1 2073 122 10 0 chr3 40846646 40846942 -177190216 + AluSg SINE Alu 1 299 -11 1617 153 55 0 chr3 40846950 40847225 -177189933 + AluJo SINE Alu 1 290 -22 240 280 148 37 chr3 40847321 40847564 -177189594 - L1ME LINE L1 -267 5854 5585 2253 106 0 3 chr3 40848650 40848953 -177188205 - AluSq SINE Alu -11 302 1 2147 84 0 18 chr3 40849151 40849465 -177187693 + AluY SINE Alu 6 314 0 2369 57 14 0 chr3 40849480 40849784 -177187374 + AluY SINE Alu 1 308 0 2287 81 0 3 chr3 40850600 40850896 -177186262 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 40850896 40850917 -177186241 + AT_rich Low_complexity Low_complexity 1 21 0 512 164 138 17 chr3 40851068 40851184 -177185974 - FLAM_A SINE Alu 0 133 4 861 40 49 18 chr3 40851214 40851442 -177185716 + (TA)n Simple_repeat Simple_repeat 1 235 0 21 36 0 0 chr3 40851499 40851527 -177185631 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr3 40852144 40852202 -177184956 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr3 40853588 40853611 -177183547 + AT_rich Low_complexity Low_complexity 1 23 0 2117 123 10 7 chr3 40855139 40855441 -177181717 + AluSx SINE Alu 1 303 -9 1831 178 14 0 chr3 40855455 40855748 -177181410 + AluJb SINE Alu 3 299 -13 1213 139 0 60 chr3 40855831 40856046 -177181112 - AluJb SINE Alu -24 288 87 180 0 0 0 chr3 40856807 40856827 -177180331 + (TA)n Simple_repeat Simple_repeat 1 20 0 2168 114 7 7 chr3 40856833 40857131 -177180027 - AluSx SINE Alu -14 298 1 1039 148 120 10 chr3 40857284 40857493 -177179665 + MER46A DNA MER2_type 5 236 0 698 232 140 51 chr3 40857941 40858256 -177178902 - L2 LINE L2 -337 2977 2635 1016 159 67 0 chr3 40858435 40858630 -177178528 - MER3 DNA MER1_type -1 208 1 23 33 0 0 chr3 40859072 40859102 -177178056 + AT_rich Low_complexity Low_complexity 1 30 0 606 242 130 37 chr3 40859189 40859404 -177177754 - MIR SINE MIR -13 249 15 367 326 81 5 chr3 40859988 40860238 -177176920 - L1MC/D LINE L1 -348 5773 5494 25 51 0 0 chr3 40860490 40860529 -177176629 + AT_rich Low_complexity Low_complexity 1 39 0 1657 181 84 35 chr3 40860895 40861171 -177175987 - L1MB7 LINE L1 -2 6182 5921 2285 102 26 0 chr3 40861171 40861475 -177175683 - AluSx SINE Alu 0 312 1 1657 181 84 35 chr3 40861475 40861814 -177175344 - L1MB7 LINE L1 -263 5921 5482 307 247 124 0 chr3 40861815 40861912 -177175246 - HAL1 LINE L1 -2322 185 77 1028 118 0 0 chr3 40862006 40862142 -177175016 - AluSx SINE Alu -19 291 156 850 107 0 0 chr3 40862142 40862254 -177174904 - AluSx SINE Alu -200 112 1 225 0 0 0 chr3 40862635 40862660 -177174498 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40863228 40863251 -177173907 + (TA)n Simple_repeat Simple_repeat 2 24 0 1727 140 89 0 chr3 40863405 40863720 -177173438 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40863738 40863760 -177173398 + AT_rich Low_complexity Low_complexity 1 22 0 2061 91 18 4 chr3 40864197 40864473 -177172685 + AluSg SINE Alu 17 296 -14 830 225 116 20 chr3 40864540 40864886 -177172272 - L1ME3A LINE L1 -10 6160 5782 1246 207 52 65 chr3 40864911 40865102 -177172056 - MLT1D LTR MaLR 0 505 320 2430 72 3 0 chr3 40865102 40865409 -177171749 - AluY SINE Alu -3 308 1 1246 207 52 65 chr3 40865409 40865603 -177171555 - MLT1D LTR MaLR -185 320 125 6809 151 73 43 chr3 40865603 40865817 -177171341 - L1MCa LINE L1 -4828 1598 1392 2053 148 0 0 chr3 40865817 40866115 -177171043 - AluJb SINE Alu -14 298 1 6809 151 73 43 chr3 40866115 40867364 -177169794 - L1MCa LINE L1 -5034 1392 85 2377 91 0 0 chr3 40867364 40867662 -177169496 - AluSq SINE Alu -11 302 5 6809 151 73 43 chr3 40867662 40867723 -177169435 - L1MCa LINE L1 -6341 85 27 499 187 81 16 chr3 40867725 40867848 -177169310 - MLT1D LTR MaLR -374 131 1 528 232 34 39 chr3 40867848 40868055 -177169103 - L1ME3A LINE L1 -412 5750 5545 4281 173 48 6 chr3 40868056 40868942 -177168216 + L1MB7 LINE L1 5215 6139 -45 2452 71 0 0 chr3 40868942 40869237 -177167921 + AluY SINE Alu 1 295 -16 4281 173 48 6 chr3 40869237 40869259 -177167899 + L1MB7 LINE L1 6139 6159 -25 677 242 56 0 chr3 40869287 40869502 -177167656 - L1ME3A LINE L1 -619 5545 5319 2405 92 7 0 chr3 40869528 40869833 -177167325 - AluSp SINE Alu -6 307 1 304 175 0 0 chr3 40869926 40869983 -177167175 + MLT1L LTR MaLR 537 593 -22 31 58 0 0 chr3 40870765 40870817 -177166341 + AT_rich Low_complexity Low_complexity 1 52 0 180 0 0 0 chr3 40871939 40871959 -177165199 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr3 40872972 40873002 -177164156 + AT_rich Low_complexity Low_complexity 1 30 0 215 320 13 13 chr3 40874003 40874078 -177163080 + MIR3 SINE MIR 133 207 -1 482 173 169 121 chr3 40874412 40874833 -177162325 - Charlie2 DNA MER1_type -1 2861 2421 1021 164 170 51 chr3 40874862 40875101 -177162057 - Charlie2 DNA MER1_type -634 2228 1942 2090 115 0 26 chr3 40875101 40875406 -177161752 - AluSg SINE Alu -13 297 1 1021 164 170 51 chr3 40875406 40875477 -177161681 - Charlie2 DNA MER1_type -920 1942 1881 756 244 60 47 chr3 40875515 40875834 -177161324 + MER46C DNA MER2_type 1 323 -15 819 245 43 80 chr3 40875846 40875919 -177161239 - Charlie2 DNA MER1_type -2467 315 241 1962 144 128 8 chr3 40875919 40876301 -177160857 + MSTA LTR MaLR 1 428 0 819 245 43 80 chr3 40876301 40876554 -177160604 - Charlie2 DNA MER1_type -2541 241 1 844 146 0 29 chr3 40876582 40876719 -177160439 - FLAM_C SINE Alu 0 133 1 228 114 29 0 chr3 40877786 40877821 -177159337 - L2 LINE L2 -18 3254 3219 210 271 0 57 chr3 40877850 40877920 -177159238 - MIR SINE MIR -140 122 57 648 256 107 52 chr3 40878138 40878207 -177158951 - HAL1 LINE L1 -408 2099 2035 2410 96 0 0 chr3 40878207 40878519 -177158639 - AluSx SINE Alu 0 312 1 648 256 107 52 chr3 40878519 40878757 -177158401 - HAL1 LINE L1 -472 2035 1775 707 229 144 11 chr3 40878832 40879248 -177157910 - LTR33 LTR ERVL 0 521 1 704 237 19 14 chr3 40879255 40879470 -177157688 - HAL1 LINE L1 -861 1646 1431 4777 256 66 38 chr3 40879470 40879778 -177157380 + L2 LINE L2 1436 1734 -1579 1890 123 39 0 chr3 40879778 40880062 -177157096 - AluSx SINE Alu -17 295 1 4777 256 66 38 chr3 40880062 40881584 -177155574 + L2 LINE L2 1734 3313 0 206 238 0 0 chr3 40881634 40881676 -177155482 + (TG)n Simple_repeat Simple_repeat 2 43 0 771 239 0 7 chr3 40881758 40881913 -177155245 - AluJo/FRAM SINE Alu -12 290 137 1513 169 6 113 chr3 40881916 40882122 -177155036 - AluJb SINE Alu -11 291 131 262 0 53 0 chr3 40882122 40882160 -177154998 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1513 169 6 113 chr3 40882160 40882279 -177154879 - AluJb SINE Alu -171 131 1 271 313 0 48 chr3 40883065 40883148 -177154010 - L3 LINE CR1 -19 1558 1480 4015 136 56 87 chr3 40883438 40884707 -177152451 + pTR5 LTR ERV1 6 589 -125 1738 191 0 0 chr3 40884788 40885082 -177152076 + AluSx SINE Alu 2 295 -17 1866 167 3 6 chr3 40885199 40885510 -177151648 - AluSq SINE Alu 0 313 4 356 177 20 7 chr3 40886755 40886902 -177150256 + (TA)n Simple_repeat Simple_repeat 1 149 0 2295 99 0 0 chr3 40886918 40887210 -177149948 - AluSq SINE Alu -21 292 1 270 235 71 12 chr3 40887364 40887449 -177149709 + MIR SINE MIR 49 138 -124 191 216 27 0 chr3 40887477 40887514 -177149644 + L2 LINE L2 3219 3256 -16 373 252 101 8 chr3 40887597 40887646 -177149512 - MER5A DNA MER1_type -15 174 131 1873 164 10 13 chr3 40887646 40887957 -177149201 + AluSx SINE Alu 1 310 -2 373 252 101 8 chr3 40887957 40888026 -177149132 - MER5A DNA MER1_type -58 131 45 235 301 250 41 chr3 40888068 40888264 -177148894 + MIR SINE MIR 20 256 -6 2226 89 0 10 chr3 40888266 40888557 -177148601 + AluSx SINE Alu 1 288 -24 315 0 0 0 chr3 40888559 40888594 -177148564 + (TG)n Simple_repeat Simple_repeat 2 36 0 772 200 55 30 chr3 40888916 40889134 -177148024 - L1MC5 LINE L1 -36 7925 7699 2126 113 33 0 chr3 40889134 40889434 -177147724 + AluSg SINE Alu 1 310 0 772 200 55 30 chr3 40889434 40889450 -177147708 - L1MC5 LINE L1 -262 7699 7685 227 214 0 0 chr3 40889902 40889944 -177147214 - MIR3 SINE MIR -11 197 156 204 40 0 0 chr3 40890175 40890200 -177146958 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1849 151 7 0 chr3 40890200 40890474 -177146684 - AluJb SINE Alu -29 283 5 353 298 28 33 chr3 40890772 40890987 -177146171 - L1ME3 LINE L1 -214 5948 5735 369 310 20 41 chr3 40890997 40891194 -177145964 - L1ME3 LINE L1 -1711 4435 4243 1528 159 32 62 chr3 40891850 40892158 -177145000 - AluJo SINE Alu -13 299 1 25 31 0 0 chr3 40892163 40892195 -177144963 + AT_rich Low_complexity Low_complexity 1 32 0 1832 151 14 0 chr3 40892472 40892750 -177144408 + AluJb SINE Alu 24 305 -7 351 285 124 29 chr3 40893053 40893190 -177143968 + MIR3 SINE MIR 36 185 -23 448 268 74 5 chr3 40893363 40893549 -177143609 + MIR SINE MIR 4 212 -50 1003 289 48 50 chr3 40894138 40894594 -177142564 - MLT1J LTR MaLR -33 478 24 548 204 232 0 chr3 40894740 40894882 -177142276 - MER5A DNA MER1_type -6 183 9 181 0 69 0 chr3 40895556 40895585 -177141573 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1462 150 44 4 chr3 40895604 40895831 -177141327 + AluSx SINE Alu 1 236 -76 2380 68 0 0 chr3 40895832 40896111 -177141047 + AluSq SINE Alu 19 297 -16 1827 209 36 58 chr3 40896135 40896603 -177140555 + LTR40c LTR ERVL 3 460 -5 378 239 0 11 chr3 40896620 40896708 -177140450 - MER5A DNA MER1_type -94 95 9 343 282 169 0 chr3 40896730 40896854 -177140304 + MIR3 SINE MIR 58 202 -6 601 178 20 0 chr3 40897069 40897170 -177139988 + MER94 DNA DNA 3 105 -29 1227 111 106 0 chr3 40897235 40897443 -177139715 - L1PA14 LINE L1 0 6161 5932 201 94 0 0 chr3 40898242 40898274 -177138884 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1534 170 0 24 chr3 40898276 40898564 -177138594 - AluSx SINE Alu -31 281 1 663 266 44 18 chr3 40898576 40898805 -177138353 - L1MA9 LINE L1 -38 6274 6040 280 225 108 42 chr3 40899418 40899538 -177137620 - LTR16C LTR ERVL -2 489 362 2027 111 36 0 chr3 40899592 40899872 -177137286 - AluSx SINE Alu -22 290 1 1405 198 44 26 chr3 40899872 40900211 -177136947 - L1MB7 LINE L1 -358 5826 5482 231 247 124 0 chr3 40900212 40900309 -177136849 - HAL1 LINE L1 -2322 185 77 1031 118 0 0 chr3 40900403 40900539 -177136619 - AluSx SINE Alu -19 291 156 865 107 0 0 chr3 40900539 40900651 -177136507 - AluSx SINE Alu -201 112 1 225 0 0 0 chr3 40901032 40901057 -177136101 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40901625 40901648 -177135510 + (TA)n Simple_repeat Simple_repeat 2 24 0 1774 140 89 0 chr3 40901802 40902117 -177135041 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40902135 40902157 -177135001 + AT_rich Low_complexity Low_complexity 1 22 0 2083 91 18 4 chr3 40902594 40902870 -177134288 + AluSg SINE Alu 17 296 -14 961 217 118 23 chr3 40902937 40903283 -177133875 - L1ME3A LINE L1 -10 6160 5782 1359 207 52 65 chr3 40903308 40903499 -177133659 - MLT1D LTR MaLR 0 505 320 2239 83 0 13 chr3 40903499 40903811 -177133347 - AluY SINE Alu -3 308 1 1359 207 52 65 chr3 40903811 40904005 -177133153 - MLT1D LTR MaLR -185 320 125 7482 151 73 43 chr3 40904005 40904219 -177132939 - L1MCa LINE L1 -4828 1598 1392 2066 148 0 0 chr3 40904219 40904517 -177132641 - AluJb SINE Alu -14 298 1 7482 151 73 43 chr3 40904517 40905766 -177131392 - L1MCa LINE L1 -5034 1392 85 2399 91 0 0 chr3 40905766 40906064 -177131094 - AluSq SINE Alu -11 302 5 7482 151 73 43 chr3 40906064 40906125 -177131033 - L1MCa LINE L1 -6341 85 27 554 187 81 16 chr3 40906127 40906250 -177130908 - MLT1D LTR MaLR -374 131 1 598 232 34 39 chr3 40906250 40906457 -177130701 - L1ME3A LINE L1 -412 5750 5545 4609 175 49 1 chr3 40906458 40907343 -177129815 + L1MB7 LINE L1 5215 6141 -43 2364 94 0 0 chr3 40907344 40907641 -177129517 + AluY SINE Alu 1 297 -14 198 0 0 0 chr3 40907647 40907669 -177129489 + (TA)n Simple_repeat Simple_repeat 1 22 0 1212 139 0 60 chr3 40908430 40908645 -177128513 + AluJb SINE Alu 87 288 -24 1521 187 10 20 chr3 40908729 40909029 -177128129 - AluJb SINE Alu -13 299 3 2123 122 10 7 chr3 40909043 40909346 -177127812 - AluSx SINE Alu -8 304 1 225 0 0 0 chr3 40910906 40910931 -177126227 + (A)n Simple_repeat Simple_repeat 1 25 0 2280 100 3 0 chr3 40911066 40911365 -177125793 + AluSp SINE Alu 5 304 -9 270 0 0 0 chr3 40911375 40911405 -177125753 + (T)n Simple_repeat Simple_repeat 1 30 0 553 237 141 12 chr3 40911446 40911695 -177125463 + L1M4 LINE L1 4001 4281 -1865 269 81 0 0 chr3 40911700 40911737 -177125421 + AluSx SINE Alu 1 37 -262 924 109 0 14 chr3 40911737 40911875 -177125283 - AluSg/x SINE Alu -8 302 167 2030 127 0 0 chr3 40911875 40912159 -177124999 + AluSx SINE Alu 26 309 -3 837 219 85 99 chr3 40912193 40912237 -177124921 + L1M4 LINE L1 4323 4366 -1780 2398 79 3 7 chr3 40912237 40912542 -177124616 + AluSq SINE Alu 1 304 -9 837 219 85 99 chr3 40912542 40912732 -177124426 + L1M4 LINE L1 4366 4557 -1589 2472 80 0 0 chr3 40912732 40913033 -177124125 + AluSg SINE Alu 1 301 -9 837 219 85 99 chr3 40913033 40913397 -177123761 + L1M4 LINE L1 4557 5084 -1062 1801 149 10 33 chr3 40913397 40913699 -177123459 - AluJb SINE Alu -17 295 1 837 219 85 99 chr3 40913699 40913891 -177123267 + L1M4 LINE L1 5084 5277 -869 2128 142 10 0 chr3 40913899 40914202 -177122956 + AluSx SINE Alu 1 306 -6 198 143 0 0 chr3 40914204 40914239 -177122919 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 2840 159 29 29 chr3 40914575 40915097 -177122061 - L1MCa LINE L1 -5763 663 142 1990 158 0 7 chr3 40915120 40915424 -177121734 - AluSp SINE Alu -11 302 1 1969 232 137 70 chr3 40915425 40916150 -177121008 - HAL1 LINE L1 -1263 1244 430 831 175 4 118 chr3 40916150 40916350 -177120808 + MER20 DNA MER1_type 1 169 -50 2377 98 0 0 chr3 40916350 40916645 -177120513 + AluSx SINE Alu 1 295 -17 831 175 4 118 chr3 40916645 40916690 -177120468 + MER20 DNA MER1_type 169 218 -1 1969 232 137 70 chr3 40916690 40916981 -177120177 - HAL1 LINE L1 -2077 430 160 1300 103 0 0 chr3 40916984 40917149 -177120009 - AluSg/x SINE Alu -14 298 134 2349 90 0 13 chr3 40917149 40917450 -177119708 - AluSx SINE Alu -15 297 1 1405 198 44 26 chr3 40917450 40917789 -177119369 - L1MB7 LINE L1 -358 5826 5482 231 247 124 0 chr3 40917790 40917887 -177119271 - HAL1 LINE L1 -2322 185 77 1031 118 0 0 chr3 40917981 40918117 -177119041 - AluSx SINE Alu -19 291 156 865 107 0 0 chr3 40918117 40918229 -177118929 - AluSx SINE Alu -201 112 1 225 0 0 0 chr3 40918610 40918635 -177118523 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40919203 40919226 -177117932 + (TA)n Simple_repeat Simple_repeat 2 24 0 1774 140 89 0 chr3 40919380 40919695 -177117463 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40919713 40919735 -177117423 + AT_rich Low_complexity Low_complexity 1 22 0 2083 91 18 4 chr3 40920172 40920448 -177116710 + AluSg SINE Alu 17 296 -14 967 225 116 20 chr3 40920515 40920861 -177116297 - L1ME3A LINE L1 -10 6160 5782 1382 205 52 65 chr3 40920886 40921077 -177116081 - MLT1D LTR MaLR 0 505 320 2527 65 0 0 chr3 40921077 40921385 -177115773 - AluY SINE Alu -3 308 1 1382 205 52 65 chr3 40921385 40921579 -177115579 - MLT1D LTR MaLR -185 320 125 7482 151 73 43 chr3 40921579 40921793 -177115365 - L1MCa LINE L1 -4828 1598 1392 2066 148 0 0 chr3 40921793 40922091 -177115067 - AluJb SINE Alu -14 298 1 7482 151 73 43 chr3 40922091 40923340 -177113818 - L1MCa LINE L1 -5034 1392 85 2399 91 0 0 chr3 40923340 40923638 -177113520 - AluSq SINE Alu -11 302 5 7482 151 73 43 chr3 40923638 40923699 -177113459 - L1MCa LINE L1 -6341 85 27 554 187 81 16 chr3 40923701 40923824 -177113334 - MLT1D LTR MaLR -374 131 1 598 232 34 39 chr3 40923824 40924031 -177113127 - L1ME3A LINE L1 -412 5750 5545 4609 175 49 1 chr3 40924032 40924917 -177112241 + L1MB7 LINE L1 5215 6141 -43 2312 77 0 7 chr3 40924918 40925205 -177111953 + AluSc SINE Alu 1 285 -24 760 234 61 0 chr3 40925264 40925478 -177111680 - L1ME3A LINE L1 -619 5545 5319 2421 92 7 0 chr3 40925504 40925809 -177111349 - AluSp SINE Alu -6 307 1 201 39 0 0 chr3 40925836 40925862 -177111296 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr3 40925978 40926001 -177111157 + AT_rich Low_complexity Low_complexity 1 23 0 2298 84 0 3 chr3 40926820 40927116 -177110042 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 40927116 40927137 -177110021 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 40927433 40927457 -177109701 + AT_rich Low_complexity Low_complexity 1 24 0 33 73 0 0 chr3 40927669 40927737 -177109421 + GC_rich Low_complexity Low_complexity 1 68 0 460 289 11 68 chr3 40927926 40927974 -177109184 - L1MC5 LINE L1 -82 7879 7830 2517 63 0 3 chr3 40927974 40928275 -177108883 - AluY SINE Alu -11 300 1 460 289 11 68 chr3 40928275 40928416 -177108742 - L1MC5 LINE L1 -131 7830 7701 22 23 0 45 chr3 40928420 40928445 -177108713 + AT_rich Low_complexity Low_complexity 1 26 -16 357 82 0 0 chr3 40928445 40928494 -177108664 + (TA)n Simple_repeat Simple_repeat 1 49 0 2478 94 0 0 chr3 40928494 40928803 -177108355 - AluSq SINE Alu -4 309 1 22 23 0 45 chr3 40928803 40928820 -177108338 + AT_rich Low_complexity Low_complexity 24 42 0 599 250 128 30 chr3 40928980 40929345 -177107813 - Tigger8 DNA MER2_type -143 523 46 2545 167 49 18 chr3 40929560 40930069 -177107089 + L1MB7 LINE L1 5652 6176 -8 738 240 54 50 chr3 40930969 40931026 -177106132 + MER58A DNA MER1_type 1 56 -2364 1847 158 3 14 chr3 40931026 40931323 -177105835 - AluJb SINE Alu -17 295 2 738 240 54 50 chr3 40931323 40931486 -177105672 + MER58A DNA MER1_type 56 222 -2 1796 212 147 11 chr3 40934108 40934585 -177102573 - MER34 LTR ERV1 0 542 1 2283 101 10 0 chr3 40935931 40936228 -177100930 - AluSx SINE Alu -2 310 11 7147 165 49 115 chr3 40937334 40937352 -177099806 + L1MB2 LINE L1 3176 3194 -2977 1374 160 33 118 chr3 40937352 40937521 -177099637 + AluJb SINE Alu 1 130 -182 1934 137 27 10 chr3 40937521 40937820 -177099338 + AluSx SINE Alu 6 309 -3 1374 160 33 118 chr3 40937820 40937982 -177099176 + AluJb SINE Alu 130 304 -8 7147 165 49 115 chr3 40937982 40938496 -177098662 + L1MB2 LINE L1 3194 3741 -2430 2057 129 24 0 chr3 40938496 40938783 -177098375 - AluSx SINE Alu -18 294 1 7147 165 49 115 chr3 40938783 40939780 -177097378 + L1MB2 LINE L1 3741 4803 -1368 721 176 64 0 chr3 40939780 40939905 -177097253 + FAM SINE Alu 33 165 -20 7147 165 49 115 chr3 40939905 40941442 -177095716 + L1MB2 LINE L1 4803 6144 -27 231 36 0 0 chr3 40941450 40941478 -177095680 + (CA)n Simple_repeat Simple_repeat 1 28 0 1606 172 89 3 chr3 40942447 40942750 -177094408 - MER58B DNA MER1_type 0 341 13 550 207 173 0 chr3 40942781 40942931 -177094227 + MER5A DNA MER1_type 14 189 0 1253 204 112 30 chr3 40943071 40943390 -177093768 + L1MC2 LINE L1 5935 6289 -55 2232 107 3 7 chr3 40943390 40943699 -177093459 - AluSx SINE Alu -4 308 1 1253 204 112 30 chr3 40943699 40943746 -177093412 + L1MC2 LINE L1 6289 6331 -13 1174 89 0 0 chr3 40943853 40943999 -177093159 + AluY SINE Alu 148 293 -18 281 247 65 17 chr3 40945808 40945959 -177091199 + MIR SINE MIR 37 192 -62 1840 161 92 52 chr3 40946225 40946628 -177090530 - MSTC LTR MaLR -7 421 3 574 206 35 28 chr3 40947039 40947180 -177089978 - MER5A DNA MER1_type -43 146 5 936 171 0 38 chr3 40947234 40947358 -177089800 + MER58B DNA MER1_type 190 308 -2112 2332 95 0 0 chr3 40947358 40947663 -177089495 - AluSc SINE Alu -4 305 1 936 171 0 38 chr3 40947663 40947696 -177089462 + MER58B DNA MER1_type 308 341 0 248 299 188 0 chr3 40947910 40948028 -177089130 - MIR SINE MIR -63 145 43 1556 207 149 41 chr3 40948082 40948569 -177088589 - MLT1F LTR MaLR 0 542 6 2382 71 0 0 chr3 40949063 40949371 -177087787 + AluY SINE Alu 1 308 -3 834 192 136 5 chr3 40949972 40950170 -177086988 - MER58A DNA MER1_type 0 224 1 311 361 31 8 chr3 40950194 40950324 -177086834 + L2 LINE L2 3136 3268 -4 290 200 12 62 chr3 40950858 40950938 -177086220 - MIR SINE MIR -92 170 95 2003 128 7 0 chr3 40950976 40951272 -177085886 + AluSx SINE Alu 1 298 -14 322 204 45 114 chr3 40951272 40951347 -177085811 + MIR SINE MIR 90 154 -108 2298 82 0 10 chr3 40951347 40951651 -177085507 + AluSx SINE Alu 1 301 -11 322 204 45 114 chr3 40951651 40951707 -177085451 + MIR SINE MIR 154 212 -50 199 175 75 0 chr3 40951748 40951788 -177085370 + L2 LINE L2 3270 3312 -1 526 183 240 0 chr3 40952216 40952391 -177084767 - MIR SINE MIR -37 225 9 238 315 71 55 chr3 40952492 40952619 -177084539 + MIR3 SINE MIR 11 139 -69 2009 120 0 16 chr3 40953076 40953384 -177083774 - AluSx SINE Alu -9 303 1 1567 168 15 4 chr3 40954005 40954279 -177082879 + AluJo SINE Alu 10 286 -26 1790 132 15 0 chr3 40954557 40954830 -177082328 + AluSx SINE Alu 1 277 -35 2150 103 0 10 chr3 40955449 40955761 -177081397 + AluSq SINE Alu 1 309 -4 964 118 0 22 chr3 40956660 40956796 -177080362 + FLAM_C SINE Alu 1 133 0 333 291 48 75 chr3 40956832 40957214 -177079944 - L2 LINE L2 -183 3089 2719 345 338 31 25 chr3 40957354 40957448 -177079710 + L2 LINE L2 3149 3246 -67 2057 149 0 0 chr3 40957448 40957757 -177079401 - AluSx SINE Alu -3 309 1 345 338 31 25 chr3 40957757 40957822 -177079336 + L2 LINE L2 3246 3309 -4 2036 123 0 0 chr3 40957847 40958158 -177079000 - AluSx SINE Alu 0 311 1 382 217 60 0 chr3 40958323 40958406 -177078752 - MIR SINE MIR -111 151 64 538 211 0 10 chr3 40958520 40958624 -177078534 - FLAM_C SINE Alu -40 103 1 1250 133 10 0 chr3 40959020 40959223 -177077935 - L1MA2 LINE L1 0 6304 6100 491 235 7 29 chr3 40959223 40959359 -177077799 + LTR37B LTR ERV1 3 135 -333 * 626 221 0 15 chr3 40959351 40959482 -177077676 - MER58B DNA MER1_type -9 332 204 3126 178 56 14 chr3 40959492 40960124 -177077034 - MER39 LTR ERV1 0 707 1 668 167 12 68 chr3 40960125 40960213 -177076945 - MER58B DNA MER1_type -147 194 118 2337 84 0 3 chr3 40960213 40960512 -177076646 + AluSp SINE Alu 1 298 -15 668 167 12 68 chr3 40960512 40960585 -177076573 - MER58B DNA MER1_type -223 118 42 402 222 96 89 chr3 40960632 40960902 -177076256 + LTR37B LTR ERV1 197 468 0 373 323 123 7 chr3 40961337 40961492 -177075666 + MIR3 SINE MIR 21 193 -15 1054 178 186 35 chr3 40961588 40961846 -177075312 + AluJo SINE Alu 1 297 -5 759 242 68 89 chr3 40963362 40963820 -177073338 - L1MC4 LINE L1 -5 8037 7590 267 267 13 13 chr3 40963879 40963954 -177073204 - L1MC4 LINE L1 -629 7413 7339 324 210 0 16 chr3 40964892 40964954 -177072204 + MER20 DNA MER1_type 1 61 -158 890 53 0 0 chr3 40964954 40965067 -177072091 - AluY SINE Alu -13 298 186 306 106 106 0 chr3 40965069 40965116 -177072042 + MER20 DNA MER1_type 54 105 -114 1231 216 183 49 chr3 40965739 40966187 -177070971 - MLT1H LTR MaLR 0 549 42 320 287 128 32 chr3 40966202 40966390 -177070768 - L1P5 LINE L1 -346 5808 5603 1039 83 0 0 chr3 40966650 40966782 -177070376 + AluSg SINE Alu 2 133 -177 1998 122 7 3 chr3 40966782 40967078 -177070080 + AluSq SINE Alu 1 297 -16 425 345 61 27 chr3 40967078 40967371 -177069787 - L2 LINE L2 -788 2526 2224 1133 143 22 0 chr3 40967413 40967595 -177069563 - MER5A DNA MER1_type 0 189 4 705 209 29 0 chr3 40968295 40968434 -177068724 + MIR SINE MIR 102 244 -18 2154 114 3 0 chr3 40969023 40969331 -177067827 - AluSx SINE Alu -3 309 1 561 202 151 1 chr3 40970668 40970831 -177066327 + L1ME3 LINE L1 5727 5912 -250 1606 207 30 3 chr3 40970838 40971138 -177066020 + MER58B DNA MER1_type 5 312 -29 392 148 171 11 chr3 40971135 40971223 -177065935 - MLT1D LTR MaLR -133 372 271 * 457 224 61 0 chr3 40971251 40971349 -177065809 - MLT1D LTR MaLR -330 175 72 2540 208 57 80 chr3 40971385 40971591 -177065567 - MER21B LTR ERV1 -60 803 594 1232 171 78 91 chr3 40971591 40972042 -177065116 - LTR56 LTR ERV1 0 445 1 2540 208 57 80 chr3 40972042 40972558 -177064600 - MER21B LTR ERV1 -269 594 98 392 208 0 94 chr3 40972669 40972775 -177064383 - MER21B LTR ERV1 -767 96 1 526 167 0 0 chr3 40972783 40972861 -177064297 - MLT1D LTR MaLR -426 79 2 1717 140 18 22 chr3 40972861 40973139 -177064019 + MER61B LTR ERV1 1 277 -148 354 183 0 0 chr3 40973134 40973194 -177063964 - AluJ SINE Alu -109 193 134 * 772 170 0 15 chr3 40973194 40973329 -177063829 - AluJ SINE Alu -169 133 1 560 216 81 20 chr3 40973329 40973477 -177063681 + MER5A DNA MER1_type 33 189 0 609 118 0 0 chr3 40973542 40973627 -177063531 - MER61B LTR ERV1 -29 396 312 733 104 0 0 chr3 40973633 40973729 -177063429 + AluJb SINE Alu 198 293 -19 1744 167 10 0 chr3 40974205 40974498 -177062660 - AluSx SINE Alu -14 298 3 2358 97 0 0 chr3 40974841 40975151 -177062007 - AluSx SINE Alu -2 310 1 2557 42 0 3 chr3 40975739 40976047 -177061111 - AluY SINE Alu -4 307 1 482 275 90 0 chr3 40976809 40976998 -177060160 + MIR SINE MIR 57 262 0 889 258 55 24 chr3 40977202 40977493 -177059665 + L1MC4a LINE L1 5525 5824 -1984 2093 110 7 7 chr3 40977493 40977801 -177059357 + AluSq SINE Alu 1 308 -5 329 335 90 30 chr3 40977896 40978096 -177059062 + L1MC4a LINE L1 5987 6198 -1610 728 174 116 6 chr3 40978401 40978573 -177058585 - AluSx SINE Alu -120 192 2 309 58 0 94 chr3 40979435 40979488 -177057670 - AluSc SINE Alu -3 296 252 6857 69 32 0 chr3 40980367 40981333 -177055825 - L1P LINE L1 -1102 5044 4048 982 283 78 34 chr3 40981669 40982087 -177055071 + LTR16A LTR ERVL 1 443 -7 542 276 128 10 chr3 40982643 40982846 -177054312 - MIR SINE MIR -20 242 16 341 233 9 95 chr3 40982879 40982995 -177054163 + MER5A DNA MER1_type 5 110 -79 442 74 0 0 chr3 40983005 40983082 -177054076 + Alu SINE Alu 230 306 0 430 253 30 0 chr3 40983411 40983510 -177053648 + MIR SINE MIR 83 184 -78 336 252 65 65 chr3 40983862 40984001 -177053157 + MIR3 SINE MIR 10 148 -60 1080 140 16 86 chr3 40984056 40984234 -177052924 - AluSg/x SINE Alu -1 311 153 2698 31 0 0 chr3 40984234 40984552 -177052606 - AluYb8 SINE Alu 0 318 1 1080 140 16 86 chr3 40984552 40984616 -177052542 - AluSg/x SINE Alu -159 153 86 308 336 9 9 chr3 40984617 40984730 -177052428 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 40984754 40984808 -177052350 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 40984808 40985249 -177051909 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 40985499 40985552 -177051606 + GC_rich Low_complexity Low_complexity 1 53 0 1783 171 0 3 chr3 40987711 40988016 -177049142 - AluJo SINE Alu -8 304 1 2108 99 10 19 chr3 40988280 40988593 -177048565 + AluSp SINE Alu 1 310 -3 310 288 182 33 chr3 40988808 40989291 -177047867 - L1ME4a LINE L1 -3 6118 5564 478 279 162 0 chr3 40989363 40989517 -177047641 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 40989921 40990112 -177047046 - MER3 DNA MER1_type -5 204 9 689 226 93 56 chr3 40991859 40992129 -177045029 + MER46C DNA MER2_type 1 280 -58 2270 83 0 3 chr3 40992162 40992462 -177044696 + AluSg SINE Alu 1 299 -11 521 262 129 25 chr3 40992532 40992953 -177044205 - L1MC4a LINE L1 -340 5781 5547 1772 142 3 41 chr3 40992955 40993271 -177043887 + AluSx SINE Alu 1 304 -8 1160 223 72 23 chr3 40993383 40993688 -177043470 - L1ME3A LINE L1 -1 6169 5850 862 181 70 0 chr3 40993723 40993894 -177043264 - MER5A DNA MER1_type -6 183 1 186 43 0 0 chr3 40994021 40994044 -177043114 + (T)n Simple_repeat Simple_repeat 1 23 0 533 265 0 24 chr3 40994111 40994400 -177042758 + C-rich Low_complexity Low_complexity 1 282 0 2320 79 0 10 chr3 40994872 40995176 -177041982 + AluSg SINE Alu 1 301 -9 2203 107 0 0 chr3 40995256 40995555 -177041603 + AluSx SINE Alu 2 300 -12 247 275 77 22 chr3 40995602 40995693 -177041465 - MIR SINE MIR -77 131 36 272 244 35 12 chr3 40995758 40995844 -177041314 + L1ME4a LINE L1 5531 5618 -503 230 200 13 13 chr3 40996330 40996405 -177040753 + L1ME4a LINE L1 6047 6121 0 1063 152 0 17 chr3 40996935 40997113 -177040045 + FRAM SINE Alu 1 173 -3 3570 122 63 4 chr3 40997441 40998091 -177039067 + L1MA8 LINE L1 5216 5897 -394 234 213 0 0 chr3 40998211 40998258 -177038900 + L1ME4a LINE L1 6061 6107 -14 23 0 0 0 chr3 40998277 40998300 -177038858 + AT_rich Low_complexity Low_complexity 1 23 0 334 170 0 150 chr3 40998846 40998946 -177038212 - MER20B DNA MER1_type -696 87 3 1529 134 40 22 chr3 40999167 40999442 -177037716 - AluJb SINE Alu -32 280 1 765 168 96 39 chr3 40999443 40999651 -177037507 - L1M2 LINE L1 -800 5491 5272 205 86 86 29 chr3 40999667 40999737 -177037421 + C-rich Low_complexity Low_complexity 6 79 0 216 118 26 66 chr3 40999737 40999813 -177037345 + (CCGCG)n Simple_repeat Simple_repeat 5 77 0 1562 142 0 0 chr3 40999979 41000212 -177036946 - AluSx SINE Alu -79 233 1 421 190 70 0 chr3 41000212 41000312 -177036846 - L1MC/D LINE L1 -2371 5437 5331 1180 126 0 0 chr3 41000312 41000479 -177036679 - AluSc SINE Alu -9 300 134 1139 212 109 11 chr3 41000488 41000662 -177036496 + Charlie1 DNA MER1_type 2009 2165 -596 1669 136 26 26 chr3 41000662 41000971 -177036187 + AluJb SINE Alu 1 309 -3 1139 212 109 11 chr3 41000971 41001145 -177036013 + Charlie1 DNA MER1_type 2165 2391 -370 345 263 0 0 chr3 41001601 41001677 -177035481 - MERVL LTR ERVL -1698 3787 3712 438 314 47 50 chr3 41001746 41002045 -177035113 - LTR16C LTR ERVL -105 386 89 2137 88 3 10 chr3 41002500 41002797 -177034361 + AluSg SINE Alu 1 295 -15 1737 85 152 0 chr3 41004565 41004835 -177032323 - LTR7 LTR ERV1 -139 311 1 2165 83 3 35 chr3 41004981 41005295 -177031863 + AluSp SINE Alu 2 305 -8 1546 178 41 77 chr3 41005508 41005874 -177031284 - MLT1A2 LTR MaLR -2 372 20 1439 162 16 65 chr3 41007639 41007948 -177029210 + AluJb SINE Alu 1 294 -18 280 284 142 14 chr3 41008236 41008454 -177028704 + L1MC4a LINE L1 4005 4250 -1896 1971 143 3 0 chr3 41008457 41008758 -177028400 + AluSq SINE Alu 4 305 -8 1557 184 47 71 chr3 41008972 41009353 -177027805 - MLT1A2 LTR MaLR -2 372 1 1860 145 0 28 chr3 41009392 41009710 -177027448 - AluJo SINE Alu -3 309 1 260 230 58 0 chr3 41009724 41009811 -177027347 - HAL1 LINE L1 -341 2166 2075 246 172 17 0 chr3 41009834 41009892 -177027266 + T-rich Low_complexity Low_complexity 1 59 0 433 254 14 21 chr3 41010264 41010406 -177026752 - HAL1 LINE L1 -677 1830 1690 3671 235 124 65 chr3 41010480 41011111 -177026047 - HAL1 LINE L1 -622 1885 1292 1653 138 98 7 chr3 41011111 41011387 -177025771 - AluJb SINE Alu -11 301 1 3671 235 124 65 chr3 41011387 41012112 -177025046 - HAL1 LINE L1 -1215 1292 611 836 175 4 118 chr3 41012112 41012312 -177024846 + MER20 DNA MER1_type 1 169 -50 2247 98 0 0 chr3 41012312 41012607 -177024551 + AluSx SINE Alu 1 295 -17 836 175 4 118 chr3 41012607 41012652 -177024506 + MER20 DNA MER1_type 169 218 -1 3671 235 124 65 chr3 41012652 41012946 -177024212 - HAL1 LINE L1 -1896 611 336 2269 86 0 13 chr3 41012946 41013111 -177024047 - AluSx SINE Alu -14 298 137 2197 94 0 13 chr3 41013111 41013410 -177023748 - AluSg SINE Alu -15 295 1 2269 86 0 13 chr3 41013410 41013546 -177023612 - AluSx SINE Alu -175 137 1 3671 235 124 65 chr3 41013546 41013664 -177023494 - HAL1 LINE L1 -2171 336 12 280 305 38 0 chr3 41013802 41013933 -177023225 + L1MC4a LINE L1 4907 5042 -1104 1857 134 10 24 chr3 41014013 41014311 -177022847 + AluJo SINE Alu 1 294 -18 1942 120 6 49 chr3 41014482 41014808 -177022350 + AluSx SINE Alu 1 312 0 913 165 77 0 chr3 41014940 41015110 -177022048 + MER5A DNA MER1_type 1 183 -6 1185 220 72 23 chr3 41015145 41015450 -177021708 + L1ME3A LINE L1 5850 6169 -1 1851 139 3 41 chr3 41015562 41015878 -177021280 - AluSx SINE Alu -8 304 1 521 253 131 23 chr3 41015880 41016228 -177020930 + L1MC4a LINE L1 5547 5781 -340 2333 67 0 7 chr3 41016369 41016669 -177020489 - AluSc SINE Alu -11 298 1 768 305 92 68 chr3 41017808 41018724 -177018434 + L2 LINE L2 2288 3246 -26 224 287 69 35 chr3 41018805 41018892 -177018266 - MIR SINE MIR -78 130 41 413 258 214 22 chr3 41019392 41019621 -177017537 + MER102b DNA MER1_type 69 341 0 1050 133 0 6 chr3 41019680 41019845 -177017313 + AluSg/x SINE Alu 134 297 -15 232 309 25 0 chr3 41020792 41020873 -177016285 - L2 LINE L2 -192 3080 2998 270 324 110 23 chr3 41021240 41021459 -177015699 + MARNA DNA Mariner 279 516 -70 1015 203 13 47 chr3 41021726 41021907 -177015251 - MER58A DNA MER1_type -2196 224 50 1849 112 52 0 chr3 41021907 41022195 -177014963 + AluSx SINE Alu 1 302 0 1015 203 13 47 chr3 41022195 41022244 -177014914 - MER58A DNA MER1_type -2370 50 1 22 35 0 0 chr3 41022295 41022324 -177014834 + AT_rich Low_complexity Low_complexity 1 29 0 237 261 46 15 chr3 41022429 41022494 -177014664 - MIR SINE MIR -114 148 82 282 189 14 14 chr3 41022752 41022826 -177014332 - Charlie8 DNA MER1_type -1906 511 438 * 352 279 0 36 chr3 41022825 41022936 -177014222 - Charlie8 DNA MER1_type -2224 193 87 693 194 47 52 chr3 41023313 41023500 -177013658 + MER5A DNA MER1_type 4 189 0 689 226 79 48 chr3 41023516 41023566 -177013592 - MER46C DNA MER2_type -1 337 290 2228 93 3 0 chr3 41023566 41023866 -177013292 - AluSp SINE Alu -12 301 1 689 226 79 48 chr3 41023866 41024170 -177012988 - MER46C DNA MER2_type -48 290 1 2103 116 7 7 chr3 41024647 41024957 -177012201 - AluSx SINE Alu 0 312 3 524 280 21 28 chr3 41024971 41025114 -177012044 - MIR SINE MIR -13 249 108 1258 265 120 19 chr3 41025785 41026211 -177010947 - MLT1J LTR MaLR -42 469 1 423 230 86 3 chr3 41026380 41026488 -177010670 - MER5A DNA MER1_type -72 106 1 862 112 22 8 chr3 41026707 41026841 -177010317 + AluJo SINE Alu 1 136 -176 2152 114 3 0 chr3 41026841 41027148 -177010010 + AluY SINE Alu 1 308 -3 291 221 182 0 chr3 41027403 41027480 -177009678 + MLT1J LTR MaLR 4 94 -417 441 277 157 19 chr3 41027551 41027818 -177009340 + MLT1J LTR MaLR 203 506 -5 2068 115 3 13 chr3 41028050 41028364 -177008794 - AluSx SINE Alu 0 312 2 294 253 12 12 chr3 41029161 41029244 -177007914 + L1ME LINE L1 5690 5772 -349 1823 164 0 3 chr3 41031075 41031380 -177005778 - AluJo SINE Alu -8 304 1 2173 95 0 16 chr3 41031645 41031950 -177005208 + AluSq SINE Alu 1 300 -13 323 302 0 28 chr3 41031977 41032083 -177005075 + Charlie8 DNA MER1_type 143 245 -2172 21 36 0 0 chr3 41033277 41033305 -177003853 + AT_rich Low_complexity Low_complexity 1 28 0 2245 81 0 3 chr3 41033351 41033647 -177003511 + AluSc SINE Alu 1 295 -14 1741 161 0 20 chr3 41033698 41034003 -177003155 + AluJb SINE Alu 1 299 -13 328 305 40 63 chr3 41036458 41036681 -177000477 + MLT1K LTR MaLR 13 230 -358 766 187 30 74 chr3 41036730 41036933 -177000225 - MIR SINE MIR -5 257 64 206 162 0 27 chr3 41036973 41037010 -177000148 + L2 LINE L2 3263 3298 -15 1360 183 29 42 chr3 41037095 41037407 -176999751 - AluJo SINE Alu -4 308 1 293 85 0 0 chr3 41037407 41037454 -176999704 - L1MA7 LINE L1 -45 6246 6200 1632 161 50 7 chr3 41037466 41037765 -176999393 - AluJb SINE Alu 0 312 1 233 296 0 14 chr3 41037894 41037965 -176999193 + MLT1L LTR MaLR 432 501 -114 3122 191 95 9 chr3 41038520 41039235 -176997923 + L1ME1 LINE L1 5382 6161 -5 295 328 91 27 chr3 41039269 41039455 -176997703 + L2 LINE L2 3070 3267 -5 361 189 54 0 chr3 41039840 41039914 -176997244 + MER116 DNA Mariner 2 79 -1 2167 87 10 3 chr3 41039969 41040267 -176996891 + AluSx SINE Alu 1 300 -12 247 275 77 22 chr3 41040314 41040405 -176996753 - MIR SINE MIR -77 131 36 272 244 35 12 chr3 41040470 41040556 -176996602 + L1ME4a LINE L1 5531 5618 -503 230 200 13 13 chr3 41041041 41041116 -176996042 + L1ME4a LINE L1 6047 6121 0 1063 152 0 17 chr3 41041646 41041824 -176995334 + FRAM SINE Alu 1 173 -3 4396 128 63 7 chr3 41042161 41042971 -176994187 + L1MA8 LINE L1 5216 6061 -230 2428 115 15 38 chr3 41043199 41043598 -176993560 - MLT1B LTR MaLR 0 390 1 239 242 16 0 chr3 41043633 41043695 -176993463 + CT-rich Low_complexity Low_complexity 2 64 0 210 37 0 0 chr3 41044539 41044566 -176992592 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 314 244 61 10 chr3 41044683 41044832 -176992326 - MIR SINE MIR -59 203 16 2306 94 3 0 chr3 41044879 41045186 -176991972 - AluSx SINE Alu -4 308 1 199 254 68 34 chr3 41045376 41045435 -176991723 - L2 LINE L2 -8 3305 3245 370 213 13 0 chr3 41045463 41045538 -176991620 - MIR SINE MIR -11 251 176 1024 231 97 64 chr3 41045548 41046082 -176991076 + MLT1F LTR MaLR 6 592 -3 296 269 8 82 chr3 41046094 41046228 -176990930 - MIR SINE MIR -103 159 36 538 305 133 50 chr3 41046482 41046761 -176990397 + L2 LINE L2 2955 3256 -16 217 366 0 0 chr3 41046782 41046853 -176990305 - L2 LINE L2 -219 3053 2983 365 264 52 69 chr3 41046853 41047027 -176990131 + MER5B DNA MER1_type 2 172 -6 225 224 69 0 chr3 41047069 41047127 -176990031 - MIR SINE MIR -25 237 176 256 289 26 0 chr3 41047456 41047532 -176989626 - L2 LINE L2 -3 3310 3233 757 265 87 17 chr3 41047954 41048184 -176988974 - MIR SINE MIR -3 259 14 2314 60 0 0 chr3 41048651 41048986 -176988172 + AluY SINE Alu 1 335 0 1784 218 3 11 chr3 41049073 41049426 -176987732 - MLT1A2 LTR MaLR -24 350 1 704 283 40 31 chr3 41049426 41049649 -176987509 + MLT1K LTR MaLR 23 247 -341 1507 189 37 53 chr3 41049657 41050037 -176987121 + MLT1B LTR MaLR 1 374 -16 598 197 175 44 chr3 41050096 41050279 -176986879 + MLT1K LTR MaLR 323 529 -59 1536 178 47 10 chr3 41050279 41050577 -176986581 - AluJo SINE Alu -3 309 1 829 176 0 0 chr3 41050591 41050722 -176986436 - FLAM_A SINE Alu -2 131 1 257 114 0 0 chr3 41051333 41051368 -176985790 - MER5A DNA MER1_type -1 188 154 796 177 71 0 chr3 41051409 41051550 -176985608 - MER5A DNA MER1_type -38 151 1 436 208 0 13 chr3 41052000 41052077 -176985081 - MER5A DNA MER1_type 0 189 114 1502 153 80 4 chr3 41052182 41052457 -176984701 - AluJb SINE Alu -16 296 1 868 202 0 11 chr3 41052583 41052761 -176984397 - FRAM SINE Alu 0 176 1 905 158 50 104 chr3 41052835 41053010 -176984148 - AluJo SINE Alu 0 312 152 2358 56 23 0 chr3 41053010 41053314 -176983844 - AluY SINE Alu 0 311 1 905 158 50 104 chr3 41053314 41053378 -176983780 - AluJo SINE Alu -160 152 86 308 336 9 9 chr3 41053379 41053492 -176983666 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 41053516 41053570 -176983588 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 41053570 41054011 -176983147 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 41054261 41054314 -176982844 + GC_rich Low_complexity Low_complexity 1 53 0 820 157 116 25 chr3 41056061 41056259 -176980899 + AluJo SINE Alu 87 302 -10 2151 100 0 7 chr3 41057163 41057463 -176979695 - AluSc SINE Alu -11 298 1 1611 152 10 30 chr3 41057470 41057767 -176979391 - AluJo SINE Alu -18 294 4 288 290 100 46 chr3 41057784 41058009 -176979149 - MIR SINE MIR -2 260 21 3346 145 48 66 chr3 41058043 41058692 -176978466 + L1MB8 LINE L1 5425 6084 -94 2004 111 0 4 chr3 41058692 41058972 -176978186 + AluSx SINE Alu 2 280 -32 192 40 0 0 chr3 41058972 41058997 -176978161 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3346 145 48 66 chr3 41058997 41059092 -176978066 + L1MB8 LINE L1 6082 6157 -21 970 243 83 99 chr3 41059494 41059920 -176977238 - MER41C LTR ERV1 0 554 138 2319 71 0 3 chr3 41059920 41060214 -176976944 + AluSc SINE Alu 1 293 -16 970 243 83 99 chr3 41060214 41060350 -176976808 - MER41C LTR ERV1 -416 138 1 229 329 82 12 chr3 41060659 41060744 -176976414 - L2 LINE L2 -19 3253 3163 361 283 163 70 chr3 41060845 41061169 -176975989 - L2 LINE L2 0 3313 2932 1694 106 36 18 chr3 41061169 41061444 -176975714 + AluJb SINE Alu 1 280 -32 361 283 163 70 chr3 41061444 41061578 -176975580 - L2 LINE L2 -381 2932 2812 334 170 0 150 chr3 41061665 41061765 -176975393 + MER20B DNA MER1_type 3 87 -696 23 0 0 0 chr3 41062311 41062334 -176974824 + AT_rich Low_complexity Low_complexity 1 23 0 260 207 207 0 chr3 41062353 41062435 -176974723 - L1ME4a LINE L1 -14 6107 6009 2043 117 13 0 chr3 41062488 41062786 -176974372 - AluSx SINE Alu -10 302 1 2131 108 16 3 chr3 41062854 41063159 -176973999 - AluSc SINE Alu 0 309 1 1982 112 0 33 chr3 41064551 41064881 -176972277 - AluSx SINE Alu 0 320 1 320 64 21 0 chr3 41065001 41065048 -176972110 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1901 106 7 14 chr3 41065050 41065332 -176971826 - AluSg SINE Alu -30 280 1 1581 167 29 20 chr3 41065675 41065981 -176971177 - AluJb SINE Alu -3 309 1 528 194 29 19 chr3 41065984 41066087 -176971071 - MIR SINE MIR -48 214 111 352 254 82 25 chr3 41066156 41066278 -176970880 - L1ME4a LINE L1 -225 5896 5768 2156 112 3 3 chr3 41066605 41066917 -176970241 - AluSx SINE Alu 0 312 1 296 298 112 56 chr3 41066919 41067097 -176970061 - MIR SINE MIR -74 188 1 1479 214 117 93 chr3 41067172 41067760 -176969398 + MLT1E1 LTR MaLR 53 654 0 465 209 95 0 chr3 41067957 41068062 -176969096 - MIR SINE MIR -54 208 94 913 168 0 17 chr3 41068064 41068237 -176968921 + FRAM SINE Alu 1 169 -7 701 285 39 25 chr3 41068549 41068830 -176968328 - L1MC4a LINE L1 -1895 5913 5629 901 206 70 75 chr3 41069125 41069535 -176967623 - LTR16A1 LTR ERVL -4 453 15 827 218 81 21 chr3 41070349 41070760 -176966398 + MLT1D LTR MaLR 1 505 0 2031 103 3 3 chr3 41071342 41071632 -176965526 - AluSc SINE Alu -17 292 3 1959 212 61 15 chr3 41071640 41072116 -176965042 - L1MC4 LINE L1 0 8042 7545 393 284 9 0 chr3 41072393 41072502 -176964656 - MIR SINE MIR -37 225 116 349 347 41 48 chr3 41072561 41072829 -176964329 + L2 LINE L2 3043 3308 -5 349 252 10 29 chr3 41073499 41073602 -176963556 - L2 LINE L2 -1 3271 3171 1843 224 130 20 chr3 41073650 41074189 -176962969 - HsTC2 DNA Tc2 -40 1858 1261 635 86 0 0 chr3 41074252 41074333 -176962825 + AluS SINE Alu 2 82 -231 249 267 40 10 chr3 41074345 41074446 -176962712 - L2 LINE L2 -253 3019 2916 2047 94 0 7 chr3 41074659 41074934 -176962224 + AluSx SINE Alu 3 275 -37 270 0 0 0 chr3 41074935 41074965 -176962193 + (CA)n Simple_repeat Simple_repeat 2 31 0 277 254 40 75 chr3 41075357 41075441 -176961717 - L1ME LINE L1 -344 5777 5701 1192 207 14 5 chr3 41075441 41075663 -176961495 + MER58A DNA MER1_type 1 224 0 277 254 40 75 chr3 41075663 41075751 -176961407 - L1ME LINE L1 -420 5701 5611 369 249 85 79 chr3 41076024 41076189 -176960969 - MLT1J2 LTR MaLR -2 448 283 982 282 78 34 chr3 41076233 41076651 -176960507 + LTR16A LTR ERVL 1 443 -7 542 276 128 10 chr3 41077207 41077410 -176959748 - MIR SINE MIR -20 242 16 341 233 9 95 chr3 41077443 41077559 -176959599 + MER5A DNA MER1_type 5 110 -79 442 74 0 0 chr3 41077569 41077646 -176959512 + Alu SINE Alu 230 306 0 430 253 30 0 chr3 41077974 41078073 -176959085 + MIR SINE MIR 83 184 -78 336 252 65 65 chr3 41078425 41078564 -176958594 + MIR3 SINE MIR 10 148 -60 1088 135 22 0 chr3 41078619 41078797 -176958361 - AluSp SINE Alu -1 312 131 2724 31 0 0 chr3 41078797 41079115 -176958043 - AluYb8 SINE Alu 0 318 1 646 164 15 8 chr3 41079409 41079543 -176957615 - L1MB7 LINE L1 0 6184 6050 5270 206 53 43 chr3 41079546 41080240 -176956918 - L1ME1 LINE L1 -54 6112 5426 1731 175 3 0 chr3 41080240 41080548 -176956610 - AluJb SINE Alu -3 309 1 5270 206 53 43 chr3 41080548 41081985 -176955173 - L1ME1 LINE L1 -740 5426 3947 216 0 0 0 chr3 41081985 41082009 -176955149 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5270 206 53 43 chr3 41082009 41082232 -176954926 - L1ME1 LINE L1 -2219 3947 3728 587 231 12 75 chr3 41084244 41084417 -176952741 - MIR SINE MIR -2 260 99 233 333 0 0 chr3 41084944 41085013 -176952145 + L2 LINE L2 3202 3270 -2 1365 167 12 8 chr3 41085115 41085360 -176951798 - Tigger5 DNA MER2_type 0 2323 2078 453 171 0 0 chr3 41085347 41085417 -176951741 - Tigger5 DNA MER2_type -2241 82 13 * 1312 257 158 39 chr3 41086418 41086936 -176950222 - MLT1G1 LTR MaLR -15 580 1 1656 138 3 44 chr3 41087068 41087366 -176949792 - AluJb SINE Alu -17 295 10 527 254 254 0 chr3 41087459 41087656 -176949502 + MIR SINE MIR 13 259 -3 2361 87 3 0 chr3 41088292 41088601 -176948557 + AluSp SINE Alu 1 310 -3 310 288 182 33 chr3 41088816 41089299 -176947859 - L1ME4a LINE L1 -3 6118 5564 478 279 162 0 chr3 41089371 41089525 -176947633 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 41089929 41090120 -176947038 - MER3 DNA MER1_type -5 204 9 26 50 0 0 chr3 41091563 41091603 -176945555 + AT_rich Low_complexity Low_complexity 1 40 0 1923 146 3 0 chr3 41091725 41092020 -176945138 - AluSg SINE Alu -14 296 1 2301 74 3 0 chr3 41092031 41092328 -176944830 - AluY SINE Alu -13 298 1 473 236 0 71 chr3 41092336 41092476 -176944682 - L1MC5 LINE L1 -34 7927 7798 627 223 12 42 chr3 41092491 41092657 -176944501 - L1MB7 LINE L1 -9 6175 6015 202 203 203 16 chr3 41092900 41092964 -176944194 - L2 LINE L2 -4 3309 3234 486 0 0 0 chr3 41093112 41093166 -176943992 + (TG)n Simple_repeat Simple_repeat 1 54 0 479 282 111 6 chr3 41093408 41093589 -176943569 - L2 LINE L2 0 3313 3114 450 233 117 63 chr3 41093629 41093852 -176943306 + L1ME4a LINE L1 5880 6114 -7 770 161 109 23 chr3 41094118 41094292 -176942866 + MIR SINE MIR 8 196 -66 691 143 0 9 chr3 41094301 41094406 -176942752 + AluSq/x SINE Alu 2 105 -208 420 266 148 49 chr3 41094517 41094720 -176942438 + MIR SINE MIR 28 250 -12 696 292 56 5 chr3 41095007 41095223 -176941935 + MIR SINE MIR 36 262 0 2033 137 0 3 chr3 41096356 41096669 -176940489 + AluSq SINE Alu 1 312 -1 1503 161 0 45 chr3 41096751 41097037 -176940121 - AluJo SINE Alu -16 296 24 486 275 196 25 chr3 41097094 41097569 -176939589 + L1MC/D LINE L1 5100 5682 -828 2141 96 0 3 chr3 41097569 41097870 -176939288 + AluY SINE Alu 1 300 -11 486 275 196 25 chr3 41097870 41097968 -176939190 + L1MC/D LINE L1 5682 5762 -748 1100 155 53 24 chr3 41097978 41098185 -176938973 + MER20 DNA MER1_type 7 219 0 2222 99 0 0 chr3 41099762 41100056 -176937102 + AluSx SINE Alu 1 294 -18 2027 132 0 0 chr3 41100058 41100362 -176936796 + AluSc SINE Alu 1 304 -5 686 101 8 25 chr3 41100726 41100845 -176936313 - L1PA13 LINE L1 -1 6162 6046 1813 142 3 0 chr3 41101905 41102187 -176934971 - AluJo SINE Alu -16 296 14 844 184 6 50 chr3 41102294 41102473 -176934685 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 41102489 41102540 -176934618 + (CA)n Simple_repeat Simple_repeat 2 53 0 1981 139 3 0 chr3 41102558 41102852 -176934306 + AluSx SINE Alu 1 295 -17 1652 197 0 0 chr3 41102929 41103224 -176933934 + AluSx SINE Alu 1 295 -17 431 294 62 7 chr3 41103597 41103743 -176933415 + MIR SINE MIR 20 173 -89 315 227 15 0 chr3 41103822 41103888 -176933270 - MER116 DNA Mariner -13 67 1 2279 37 44 7 chr3 41104662 41104960 -176932198 + AluY SINE Alu 1 309 -2 7711 219 35 66 chr3 41105177 41105529 -176931629 - L1MB8 LINE L1 0 6414 6053 1906 145 0 17 chr3 41105529 41105825 -176931333 - AluJb SINE Alu -16 296 6 7711 219 35 66 chr3 41105825 41107173 -176929985 - L1MB8 LINE L1 -361 6053 4666 990 167 0 0 chr3 41107173 41107341 -176929817 - FRAM SINE Alu -8 168 1 7711 219 35 66 chr3 41107341 41107927 -176929231 - L1MB8 LINE L1 -1748 4666 4064 1746 181 0 9 chr3 41107927 41108242 -176928916 - AluJb SINE Alu 0 312 1 7711 219 35 66 chr3 41108242 41109003 -176928155 - L1MB8 LINE L1 -2350 4064 3281 2462 157 33 19 chr3 41109003 41109424 -176927734 + MSTB1 LTR MaLR 4 430 -2 7711 219 35 66 chr3 41109424 41110354 -176926804 - L1MB8 LINE L1 -3133 3281 2373 449 278 15 8 chr3 41112255 41112388 -176924770 + MER117 DNA MER1_type 16 149 -48 219 167 0 0 chr3 41112527 41112569 -176924589 + (TA)n Simple_repeat Simple_repeat 2 43 0 471 172 115 33 chr3 41112719 41112841 -176924317 + FLAM_A SINE Alu 1 132 -1 687 275 17 50 chr3 41113807 41114047 -176923111 + MIR SINE MIR 21 252 -10 232 309 47 27 chr3 41114570 41114719 -176922439 + MIR3 SINE MIR 31 182 -26 1684 160 6 49 chr3 41115172 41115497 -176921661 - AluJb SINE Alu -1 311 1 421 278 136 55 chr3 41115511 41115587 -176921571 - L1ME4a LINE L1 -4 6117 6049 758 204 0 0 chr3 41115587 41115719 -176921439 + FLAM_A SINE Alu 2 133 0 421 278 136 55 chr3 41115719 41115988 -176921170 - L1ME4a LINE L1 -72 6049 5744 1152 189 87 23 chr3 41116008 41116273 -176920885 + L1MB8 LINE L1 5897 6178 0 292 283 46 13 chr3 41116316 41116468 -176920690 + HAL1 LINE L1 2272 2428 -79 243 235 24 35 chr3 41117761 41117846 -176919312 - MIR3 SINE MIR -112 96 13 277 296 104 30 chr3 41118499 41118634 -176918524 + MIR SINE MIR 8 148 -60 229 245 26 19 chr3 41119449 41119551 -176917607 + MER5A DNA MER1_type 1 112 -77 2200 93 6 13 chr3 41119772 41120084 -176917074 + AluSq SINE Alu 1 310 -3 901 88 59 15 chr3 41120093 41120229 -176916929 + L1PA11 LINE L1 6029 6170 -4 1870 141 41 28 chr3 41120759 41121122 -176916036 + L1MB3 LINE L1 5807 6174 -9 2346 64 0 7 chr3 41121122 41121419 -176915739 - AluY SINE Alu -16 295 1 1996 152 0 0 chr3 41121446 41121756 -176915402 + AluSx SINE Alu 1 310 -2 2915 77 58 16 chr3 41123369 41123799 -176913359 - LTR7 LTR ERV1 -2 448 1 2179 104 91 14 chr3 41123799 41124163 -176912995 - HERVH LTR ERV1 0 7713 7322 1460 120 19 0 chr3 41124161 41124377 -176912781 - HERVH LTR ERV1 -1894 5819 5600 * 9195 138 30 35 chr3 41124378 41126036 -176911122 - HERVH LTR ERV1 -2564 5149 3500 928 122 20 0 chr3 41126035 41126183 -176910975 - HERVH LTR ERV1 -4423 3290 3140 * 16076 90 14 19 chr3 41126177 41128938 -176908220 - HERVH LTR ERV1 -4726 2987 1 2939 62 103 0 chr3 41128940 41129346 -176907812 - LTR7 LTR ERV1 -2 448 1 2243 81 3 31 chr3 41129490 41129812 -176907346 + AluSp SINE Alu 1 313 0 370 254 16 57 chr3 41129822 41129944 -176907214 + HAL1 LINE L1 2064 2180 -327 386 273 76 17 chr3 41129983 41130155 -176907003 - Charlie8 DNA MER1_type -2231 186 5 2216 74 3 10 chr3 41130579 41130876 -176906282 - AluSg SINE Alu -15 295 1 438 314 47 50 chr3 41131333 41131632 -176905526 + LTR16C LTR ERVL 89 386 -105 345 263 0 0 chr3 41131701 41131777 -176905381 + MERVL LTR ERVL 3712 3787 -1698 278 26 26 0 chr3 41132323 41132362 -176904796 + (TG)n Simple_repeat Simple_repeat 2 41 0 1868 101 69 7 chr3 41132588 41132865 -176904293 - AluSp SINE Alu -19 294 1 532 174 14 21 chr3 41133411 41133555 -176903603 + GA-rich Low_complexity Low_complexity 2 144 0 2051 97 7 32 chr3 41134662 41134972 -176902186 - AluY SINE Alu -9 302 1 1401 151 0 9 chr3 41135825 41136050 -176901108 - AluJb SINE Alu -4 308 86 944 122 0 0 chr3 41136431 41136562 -176900596 - AluSq/x SINE Alu -179 133 3 436 313 117 18 chr3 41137177 41137621 -176899537 + HAL1 LINE L1 1145 1632 -875 906 68 0 0 chr3 41137833 41137951 -176899207 - AluY SINE Alu -7 304 187 284 300 58 0 chr3 41138082 41138202 -176898956 + L1MC4 LINE L1 7130 7256 -786 299 298 76 0 chr3 41138306 41138437 -176898721 + L1MC5 LINE L1 7299 7439 -522 267 235 25 12 chr3 41138467 41138548 -176898610 - L1M4 LINE L1 -1805 4341 4260 439 230 95 6 chr3 41138612 41138821 -176898337 + L1ME3A LINE L1 4378 4603 -1543 839 165 6 57 chr3 41138843 41139019 -176898139 + AluJo SINE Alu 113 279 -33 473 165 0 10 chr3 41139022 41139125 -176898033 + GA-rich Low_complexity Low_complexity 3 104 0 5591 132 47 52 chr3 41139142 41139848 -176897310 + L1MA6 LINE L1 4793 5501 -799 2225 92 0 7 chr3 41139848 41140152 -176897006 + AluSc SINE Alu 1 302 -7 5591 132 47 52 chr3 41140152 41140793 -176896365 + L1MA6 LINE L1 5501 6130 -170 976 145 295 13 chr3 41140793 41141020 -176896138 + AluJb SINE Alu 4 294 -8 5591 132 47 52 chr3 41141020 41141191 -176895967 + L1MA6 LINE L1 6130 6300 0 815 173 0 103 chr3 41141493 41141678 -176895480 - FRAM SINE Alu -16 160 1 513 183 0 19 chr3 41141678 41141782 -176895376 - L1 LINE L1 -1435 4711 4610 * 604 298 48 56 chr3 41141774 41142331 -176894827 + L1ME3A LINE L1 5367 5919 -245 2068 107 3 7 chr3 41142348 41142648 -176894510 + AluSx SINE Alu 1 299 -13 1912 128 0 0 chr3 41142718 41143031 -176894127 - AluSq SINE Alu 0 313 1 337 205 232 0 chr3 41143089 41143201 -176893957 + MLT1L LTR MaLR 478 615 0 31 58 0 0 chr3 41143965 41144017 -176893141 + AT_rich Low_complexity Low_complexity 1 52 0 180 0 0 0 chr3 41145139 41145159 -176891999 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr3 41146172 41146202 -176890956 + AT_rich Low_complexity Low_complexity 1 30 0 221 320 13 13 chr3 41147203 41147278 -176889880 + MIR3 SINE MIR 133 207 -1 438 245 133 0 chr3 41147612 41147800 -176889358 - Charlie2 DNA MER1_type -1 2861 2649 28 0 0 0 chr3 41147810 41147838 -176889320 + AT_rich Low_complexity Low_complexity 1 28 0 251 115 64 115 chr3 41147846 41147924 -176889234 - Charlie2 DNA MER1_type -300 2562 2489 318 105 35 0 chr3 41147976 41148033 -176889125 - Charlie2 DNA MER1_type -383 2479 2421 1162 168 165 48 chr3 41148062 41148301 -176888857 - Charlie2 DNA MER1_type -634 2228 1938 1991 115 0 26 chr3 41148301 41148606 -176888552 - AluSg SINE Alu -13 297 1 1162 168 165 48 chr3 41148606 41148699 -176888459 - Charlie2 DNA MER1_type -924 1938 1857 895 242 57 41 chr3 41148714 41149032 -176888126 + MER46C DNA MER2_type 1 323 -15 933 242 43 80 chr3 41149044 41149117 -176888041 - Charlie2 DNA MER1_type -2547 315 241 2143 144 128 8 chr3 41149117 41149499 -176887659 + MSTA LTR MaLR 1 428 0 933 242 43 80 chr3 41149499 41149752 -176887406 - Charlie2 DNA MER1_type -2621 241 1 901 146 0 29 chr3 41149780 41149917 -176887241 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chr3 41150781 41150804 -176886354 + (A)n Simple_repeat Simple_repeat 1 23 0 2435 79 0 10 chr3 41151409 41151712 -176885446 + AluSg SINE Alu 1 300 -10 2336 106 0 3 chr3 41151792 41152095 -176885063 + AluSq SINE Alu 2 303 -10 23 78 0 0 chr3 41152155 41152206 -176884952 + AT_rich Low_complexity Low_complexity 1 51 0 304 279 15 0 chr3 41152251 41152319 -176884839 + MIR SINE MIR 6 74 -188 1994 97 12 0 chr3 41152422 41152680 -176884478 + AluSx SINE Alu 37 297 -15 23 0 0 0 chr3 41153236 41153259 -176883899 + AT_rich Low_complexity Low_complexity 1 23 0 331 236 0 56 chr3 41153735 41153824 -176883334 + L2 LINE L2 3230 3313 0 425 283 73 114 chr3 41154409 41154724 -176882434 - L2 LINE L2 -62 3210 2909 254 328 76 29 chr3 41154911 41155082 -176882076 - L2 LINE L2 -572 2742 2564 561 321 158 23 chr3 41155866 41156513 -176880645 - L2 LINE L2 -942 2372 1639 2487 199 102 31 chr3 41156872 41157489 -176879669 + L1MD2 LINE L1 5574 6234 -8 2091 110 7 32 chr3 41158331 41158640 -176878518 + AluSx SINE Alu 1 301 -11 967 141 0 15 chr3 41158722 41158857 -176878301 + FLAM_C SINE Alu 1 133 0 2606 42 7 7 chr3 41159526 41159834 -176877324 + AluY SINE Alu 3 310 -1 23 54 0 0 chr3 41159916 41159953 -176877205 + AT_rich Low_complexity Low_complexity 1 37 0 2464 81 0 0 chr3 41160000 41160297 -176876861 + AluSg SINE Alu 1 297 -13 277 215 221 27 chr3 41160610 41160759 -176876399 - MIR3 SINE MIR -17 191 14 2206 81 67 0 chr3 41161017 41161300 -176875858 - AluSc SINE Alu -7 302 1 230 324 0 54 chr3 41162334 41162408 -176874750 - L3 LINE CR1 -11 1566 1497 1864 108 41 20 chr3 41163335 41163630 -176873528 + AluSx SINE Alu 1 301 -11 251 257 121 36 chr3 41163754 41163894 -176873264 - L2 LINE L2 -290 2982 2831 208 163 0 41 chr3 41165283 41165332 -176871826 + (CCCCG)n Simple_repeat Simple_repeat 3 49 0 313 289 139 40 chr3 41165449 41165622 -176871536 - L2 LINE L2 -3 3310 3121 22 0 0 0 chr3 41165663 41165685 -176871473 + AT_rich Low_complexity Low_complexity 1 22 0 343 315 99 67 chr3 41165700 41166050 -176871108 - L2 LINE L2 -188 3125 2754 425 219 89 65 chr3 41166239 41166408 -176870750 - MIR SINE MIR -78 184 12 2403 81 0 0 chr3 41166860 41167156 -176870002 + AluSx SINE Alu 1 296 -16 2515 51 0 0 chr3 41167159 41167451 -176869707 + AluY SINE Alu 1 292 -19 357 207 72 18 chr3 41167485 41167596 -176869562 + L1MC4 LINE L1 7924 8040 -2 319 312 65 22 chr3 41167756 41167894 -176869264 - MER5A DNA MER1_type -2 187 44 25 31 0 0 chr3 41168326 41168358 -176868800 + AT_rich Low_complexity Low_complexity 1 32 0 1567 142 25 22 chr3 41168442 41168716 -176868442 - LTR43 LTR ERV1 0 602 328 576 77 13 0 chr3 41168718 41168796 -176868362 + MADE1 DNA Mariner 1 79 -1 * 2152 146 3 3 chr3 41168796 41169124 -176868034 - LTR43 LTR ERV1 -274 328 1 298 352 130 24 chr3 41169447 41169953 -176867205 - L2 LINE L2 -370 2944 2385 393 211 11 0 chr3 41169969 41170059 -176867099 - LTR37B LTR ERV1 0 468 378 1260 140 117 87 chr3 41170065 41170350 -176866808 + AluJb SINE Alu 14 306 0 378 234 89 44 chr3 41170800 41170861 -176866297 - LTR37B LTR ERV1 -79 389 332 360 0 0 0 chr3 41170861 41170901 -176866257 + (TG)n Simple_repeat Simple_repeat 2 41 0 378 234 89 44 chr3 41170901 41170997 -176866161 - LTR37B LTR ERV1 -136 332 225 284 302 32 8 chr3 41171067 41171193 -176865965 - LTR37B LTR ERV1 -270 198 70 1022 173 17 17 chr3 41171195 41171374 -176865784 - MER58A DNA MER1_type -1 223 45 1940 112 61 0 chr3 41171378 41171656 -176865502 + AluSq SINE Alu 1 295 -18 28 0 0 0 chr3 41171656 41171684 -176865474 + AT_rich Low_complexity Low_complexity 1 28 0 311 268 0 0 chr3 41171684 41171740 -176865418 - MER58A DNA MER1_type -168 56 1 1257 153 0 36 chr3 41171748 41171944 -176865214 - MER5A DNA MER1_type 0 189 1 247 211 123 0 chr3 41171946 41172003 -176865155 - LTR37B LTR ERV1 -394 74 11 195 340 30 0 chr3 41172011 41172111 -176865047 - L2 LINE L2 -940 2374 2272 1382 122 0 0 chr3 41172111 41172300 -176864858 + AluSx SINE Alu 1 189 -123 613 199 153 42 chr3 41173055 41173271 -176863887 - L1MC4a LINE L1 -1614 6194 5955 1509 235 84 59 chr3 41173289 41173749 -176863409 - L1MC4a LINE L1 -1903 5905 5427 2121 137 0 0 chr3 41173749 41174048 -176863110 - AluSx SINE Alu -13 299 1 1509 235 84 59 chr3 41174048 41174148 -176863010 - L1MC4a LINE L1 -2381 5427 5331 2431 77 3 3 chr3 41174148 41174448 -176862710 - AluSc SINE Alu -9 300 1 953 137 37 31 chr3 41174449 41174610 -176862548 - AluJb SINE Alu -31 281 120 5277 176 82 53 chr3 41174628 41175283 -176861875 + Charlie1a DNA MER1_type 49 683 -2078 963 143 0 0 chr3 41175283 41175416 -176861742 - FLAM_A SINE Alu 0 133 1 5277 176 82 53 chr3 41175416 41175599 -176861559 + Charlie1a DNA MER1_type 683 859 -1902 1828 119 23 39 chr3 41175599 41175909 -176861249 + AluJb SINE Alu 1 305 -7 5277 176 82 53 chr3 41175909 41176436 -176860722 + Charlie1a DNA MER1_type 859 1455 0 216 67 0 0 chr3 41176554 41176584 -176860574 + (TC)n Simple_repeat Simple_repeat 1 30 0 398 297 98 17 chr3 41177641 41177877 -176859281 + L1M4 LINE L1 3574 3828 -2318 2052 148 0 3 chr3 41177882 41178185 -176858973 - AluSx SINE Alu -10 302 1 784 180 58 6 chr3 41178338 41178510 -176858648 + AluSg/x SINE Alu 105 285 -24 1747 197 0 0 chr3 41178594 41178889 -176858269 + AluSx SINE Alu 1 295 -17 417 288 62 7 chr3 41179262 41179408 -176857750 + MIR SINE MIR 20 173 -89 299 207 17 0 chr3 41179487 41179545 -176857613 - MER116 DNA Mariner -13 67 9 2157 89 43 0 chr3 41180328 41180610 -176856548 + AluSg SINE Alu 1 294 -16 2515 51 0 0 chr3 41180613 41180905 -176856253 + AluY SINE Alu 1 292 -19 357 207 72 18 chr3 41180939 41181050 -176856108 + L1MC4 LINE L1 7924 8040 -2 319 312 65 22 chr3 41181210 41181348 -176855810 - MER5A DNA MER1_type -2 187 44 25 31 0 0 chr3 41181780 41181812 -176855346 + AT_rich Low_complexity Low_complexity 1 32 0 1492 139 33 26 chr3 41181896 41182169 -176854989 - LTR43 LTR ERV1 0 602 328 576 77 13 0 chr3 41182171 41182249 -176854909 + MADE1 DNA Mariner 1 79 -1 * 2152 146 3 3 chr3 41182249 41182577 -176854581 - LTR43 LTR ERV1 -274 328 1 247 241 35 23 chr3 41183441 41183528 -176853630 - L1ME LINE L1 -503 5618 5531 236 313 80 18 chr3 41183572 41183684 -176853474 + MIR3 SINE MIR 13 131 -77 2277 87 10 3 chr3 41183731 41184029 -176853129 - AluSx SINE Alu -12 300 1 380 189 54 0 chr3 41184084 41184158 -176853000 - MER116 DNA Mariner -1 79 2 293 328 91 27 chr3 41184543 41184729 -176852429 - L2 LINE L2 -5 3267 3070 3164 191 95 9 chr3 41184763 41185478 -176851680 - L1ME1 LINE L1 -5 6161 5382 240 296 0 14 chr3 41186033 41186104 -176851054 - MLT1L LTR MaLR -114 501 432 1717 161 50 7 chr3 41186233 41186532 -176850626 + AluJb SINE Alu 1 312 0 305 85 0 0 chr3 41186544 41186591 -176850567 + L1MA7 LINE L1 6200 6246 -45 1464 183 29 42 chr3 41186591 41186903 -176850255 + AluJo SINE Alu 1 308 -4 202 162 0 27 chr3 41186988 41187025 -176850133 - L2 LINE L2 -15 3298 3263 192 259 93 0 chr3 41186992 41187046 -176850112 - MIR SINE MIR -12 250 192 * 733 187 30 74 chr3 41187065 41187268 -176849890 + MIR SINE MIR 64 257 -5 301 305 40 63 chr3 41187317 41187540 -176849618 - MLT1K LTR MaLR -358 230 13 1841 161 0 20 chr3 41189997 41190302 -176846856 - AluJb SINE Alu -13 299 1 2354 74 3 3 chr3 41190353 41190649 -176846509 - AluSg SINE Alu -14 296 1 21 36 0 0 chr3 41190695 41190723 -176846435 + AT_rich Low_complexity Low_complexity 1 28 0 317 302 0 28 chr3 41191917 41192023 -176845135 - Charlie8 DNA MER1_type -2172 245 143 2277 95 0 16 chr3 41192050 41192355 -176844803 - AluSq SINE Alu -13 300 1 1934 164 0 3 chr3 41192620 41192925 -176844233 + AluJo SINE Alu 1 304 -8 305 253 12 12 chr3 41194755 41194838 -176842320 - L1ME LINE L1 -349 5772 5690 2175 115 3 13 chr3 41195635 41195949 -176841209 + AluSx SINE Alu 2 312 0 401 281 154 15 chr3 41196181 41196448 -176840710 - MLT1J LTR MaLR -5 506 203 286 221 182 0 chr3 41196519 41196596 -176840562 - MLT1J LTR MaLR -417 94 4 2013 135 13 3 chr3 41196851 41197155 -176840003 - AluY SINE Alu -4 307 1 915 112 22 8 chr3 41197155 41197289 -176839869 - AluJo SINE Alu -176 136 1 420 230 86 3 chr3 41197508 41197616 -176839542 + MER5A DNA MER1_type 1 106 -72 1227 265 120 19 chr3 41197785 41198211 -176838947 + MLT1J LTR MaLR 1 469 -42 506 280 21 28 chr3 41198880 41199023 -176838135 + MIR SINE MIR 108 249 -13 2198 104 0 7 chr3 41199033 41199322 -176837836 + AluSq SINE Alu 1 287 -26 787 163 0 0 chr3 41199216 41199345 -176837813 + AluSp/q SINE Alu 182 310 -3 389 288 182 33 chr3 41199560 41200043 -176837115 - L1ME4a LINE L1 -3 6118 5564 478 279 162 0 chr3 41200115 41200269 -176836889 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 41200673 41200864 -176836294 - MER3 DNA MER1_type -5 204 9 26 50 0 0 chr3 41202307 41202347 -176834811 + AT_rich Low_complexity Low_complexity 1 40 0 1923 142 10 0 chr3 41202469 41202764 -176834394 - AluSx SINE Alu -14 298 1 2301 74 3 0 chr3 41202775 41203072 -176834086 - AluY SINE Alu -13 298 1 473 236 0 71 chr3 41203080 41203220 -176833938 - L1MC5 LINE L1 -34 7927 7798 627 223 12 42 chr3 41203235 41203401 -176833757 - L1MB7 LINE L1 -9 6175 6015 202 203 203 16 chr3 41203643 41203707 -176833451 - L2 LINE L2 -4 3309 3234 486 0 0 0 chr3 41203855 41203909 -176833249 + (TG)n Simple_repeat Simple_repeat 1 54 0 479 282 111 6 chr3 41204151 41204332 -176832826 - L2 LINE L2 0 3313 3114 450 233 117 63 chr3 41204372 41204595 -176832563 + L1ME4a LINE L1 5880 6114 -7 770 161 109 23 chr3 41204861 41205035 -176832123 + MIR SINE MIR 8 196 -66 691 143 0 9 chr3 41205044 41205149 -176832009 + AluSq/x SINE Alu 2 105 -208 420 266 148 49 chr3 41205260 41205463 -176831695 + MIR SINE MIR 28 250 -12 696 292 56 5 chr3 41205750 41205966 -176831192 + MIR SINE MIR 36 262 0 2033 137 0 3 chr3 41207099 41207412 -176829746 + AluSq SINE Alu 1 312 -1 1503 161 0 45 chr3 41207494 41207780 -176829378 - AluJo SINE Alu -16 296 24 486 275 196 25 chr3 41207837 41208312 -176828846 + L1MC/D LINE L1 5100 5682 -828 2141 96 0 3 chr3 41208312 41208613 -176828545 + AluY SINE Alu 1 300 -11 486 275 196 25 chr3 41208613 41208711 -176828447 + L1MC/D LINE L1 5682 5762 -748 1100 155 53 24 chr3 41208721 41208928 -176828230 + MER20 DNA MER1_type 7 219 0 2222 99 0 0 chr3 41210505 41210799 -176826359 + AluSx SINE Alu 1 294 -18 2027 132 0 0 chr3 41210801 41211105 -176826053 + AluSc SINE Alu 1 304 -5 686 101 8 25 chr3 41211469 41211588 -176825570 - L1PA13 LINE L1 -1 6162 6046 1813 142 3 0 chr3 41212647 41212929 -176824229 - AluJo SINE Alu -16 296 14 844 184 6 50 chr3 41213036 41213215 -176823943 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 41213231 41213282 -176823876 + (CA)n Simple_repeat Simple_repeat 2 53 0 1981 139 3 0 chr3 41213300 41213594 -176823564 + AluSx SINE Alu 1 295 -17 1652 197 0 0 chr3 41213671 41213966 -176823192 + AluSx SINE Alu 1 295 -17 431 294 62 7 chr3 41214339 41214485 -176822673 + MIR SINE MIR 20 173 -89 315 227 15 0 chr3 41214564 41214630 -176822528 - MER116 DNA Mariner -13 67 1 2279 37 44 7 chr3 41215404 41215702 -176821456 + AluY SINE Alu 1 309 -2 4986 163 30 12 chr3 41215919 41216271 -176820887 - L1MB8 LINE L1 0 6178 5834 1906 145 0 17 chr3 41216271 41216567 -176820591 - AluJb SINE Alu -16 296 6 4986 163 30 12 chr3 41216567 41217914 -176819244 - L1MB8 LINE L1 -344 5834 4445 990 167 0 0 chr3 41217915 41218083 -176819075 - FRAM SINE Alu -8 168 1 1524 191 41 52 chr3 41218097 41218537 -176818621 - L1MB8 LINE L1 -1717 4429 3995 379 130 139 61 chr3 41218953 41219068 -176818090 - MLT1B LTR MaLR -266 124 1 704 283 40 31 chr3 41219076 41219299 -176817859 - MLT1K LTR MaLR -341 247 23 1611 217 6 22 chr3 41219299 41219654 -176817504 + MLT1A2 LTR MaLR 1 349 -25 262 246 84 69 chr3 41220539 41220742 -176816416 + L1MC4a LINE L1 5711 5916 -1892 549 200 158 42 chr3 41220746 41220961 -176816197 + L1MC4a LINE L1 5955 6194 -1614 4685 94 1 12 chr3 41221745 41222428 -176814730 + HERVH LTR ERV1 2226 2901 -4812 22 0 0 0 chr3 41222851 41222873 -176814285 + GC_rich Low_complexity Low_complexity 1 22 0 2318 156 31 11 chr3 41323022 41323495 -176713663 - L1M3 LINE L1 -504 5679 5200 2171 108 13 0 chr3 41323536 41323843 -176713315 - AluSx SINE Alu -1 311 1 302 293 93 47 chr3 41324520 41324670 -176712488 + L1ME4a LINE L1 5386 5542 -579 237 269 76 8 chr3 41324818 41324937 -176712221 + L1ME4a LINE L1 5817 5943 -178 242 338 0 0 chr3 41325134 41325175 -176711983 + GA-rich Low_complexity Low_complexity 1 44 -36 2100 124 0 9 chr3 41325175 41325490 -176711668 + AluSx SINE Alu 1 312 0 242 338 0 0 chr3 41325490 41325528 -176711630 + GA-rich Low_complexity Low_complexity 43 80 0 227 204 20 0 chr3 41325616 41325665 -176711493 + CT-rich Low_complexity Low_complexity 2 51 0 204 125 0 0 chr3 41325665 41325697 -176711461 + (CA)n Simple_repeat Simple_repeat 2 33 0 361 305 39 26 chr3 41327636 41327790 -176709368 + MER5B DNA MER1_type 17 172 -6 312 193 125 11 chr3 41327859 41327947 -176709211 - MER5A DNA MER1_type -77 112 15 1934 143 117 8 chr3 41328201 41328586 -176708572 + L1MB8 LINE L1 5752 6178 0 25 83 0 0 chr3 41328673 41328733 -176708425 + AT_rich Low_complexity Low_complexity 1 60 0 961 270 44 49 chr3 41328765 41329313 -176707845 + L1ME3 LINE L1 5284 5828 -334 560 231 56 7 chr3 41329437 41329580 -176707578 - MLT1H LTR MaLR -365 184 35 215 227 0 0 chr3 41329968 41330012 -176707146 + MIR SINE MIR 212 255 -7 323 294 103 19 chr3 41330029 41330243 -176706915 + L2 LINE L2 2830 3061 -211 221 283 0 0 chr3 41330252 41330298 -176706860 + L2 LINE L2 3265 3310 -3 255 272 217 0 chr3 41330833 41330925 -176706233 - MIR SINE MIR -123 139 28 515 225 33 17 chr3 41330946 41331066 -176706092 - MER69A DNA AcHobo -42 135 14 733 168 99 0 chr3 41331440 41331571 -176705587 + MER21B LTR ERV1 321 464 -399 344 217 101 0 chr3 41331683 41331752 -176705406 + MER58A DNA MER1_type 2 77 -30 2161 107 10 3 chr3 41332150 41332449 -176704709 + AluSx SINE Alu 1 301 -11 238 228 51 0 chr3 41332876 41332955 -176704203 - L1MDa LINE L1 -4940 1189 1107 370 234 36 36 chr3 41333013 41333150 -176704008 - L1MDa LINE L1 -5088 1031 895 1396 171 23 0 chr3 41333258 41333515 -176703643 + AluJo SINE Alu 14 276 -36 849 140 13 25 chr3 41333650 41333807 -176703351 - AluJb SINE Alu -14 298 144 7181 60 0 12 chr3 41334031 41335586 -176701572 - SVA Other Other -799 1381 1 316 170 141 126 chr3 41337568 41337703 -176699455 - MER5A DNA MER1_type -51 138 2 521 256 0 16 chr3 41338882 41339003 -176698155 + L2 LINE L2 3150 3268 -4 338 259 119 70 chr3 41339183 41339384 -176697774 + MLT1L LTR MaLR 170 380 -235 388 213 38 0 chr3 41339612 41339692 -176697466 - MIR SINE MIR -67 195 113 2420 72 0 3 chr3 41339868 41340175 -176696983 + AluY SINE Alu 1 306 -5 1742 144 11 0 chr3 41340279 41340550 -176696608 + AluSx SINE Alu 1 274 -38 551 171 26 26 chr3 41340589 41340685 -176696473 + MLT1B LTR MaLR 4 102 -288 2385 15 0 0 chr3 41340685 41340956 -176696202 + AluYb8 SINE Alu 34 304 -14 551 171 26 26 chr3 41340956 41340976 -176696182 + MLT1B LTR MaLR 101 120 -270 443 305 13 26 chr3 41341127 41341281 -176695877 - MIR3 SINE MIR -16 192 41 769 133 17 31 chr3 41342673 41343089 -176694069 + (TCCA)n Simple_repeat Simple_repeat 1 410 0 249 33 0 0 chr3 41343140 41343170 -176693988 + (CATCC)n Simple_repeat Simple_repeat 1 30 0 250 204 20 0 chr3 41343790 41343839 -176693319 - MER91A DNA MER1_type 0 190 141 817 216 35 30 chr3 41343847 41344046 -176693112 - MER3 DNA MER1_type -8 201 2 214 391 38 0 chr3 41344046 41344179 -176692979 - MER91A DNA MER1_type -58 138 1 288 268 120 42 chr3 41344983 41345125 -176692033 - L3 LINE CR1 -104 1473 1321 488 193 67 44 chr3 41345139 41345274 -176691884 + MIR SINE MIR 83 220 -42 1739 134 8 4 chr3 41345327 41345595 -176691563 - AluJb SINE Alu -18 294 26 268 323 77 19 chr3 41345735 41345890 -176691268 + MIR SINE MIR 2 165 -97 374 229 57 9 chr3 41346336 41346441 -176690717 - MIR3 SINE MIR -15 193 84 2124 105 24 0 chr3 41347813 41348107 -176689051 - AluSg SINE Alu -9 301 1 2312 153 23 0 chr3 41348107 41348493 -176688665 + L1MB3 LINE L1 5788 6182 -1 356 171 37 0 chr3 41348737 41348819 -176688339 - MLT1J LTR MaLR 0 555 471 876 203 76 10 chr3 41348829 41349026 -176688132 - MLT1G1 LTR MaLR -379 216 7 376 256 29 58 chr3 41349395 41349532 -176687626 + MER5B DNA MER1_type 1 133 -45 281 239 14 0 chr3 41349711 41349782 -176687376 - MIR3 SINE MIR -11 197 126 486 216 17 35 chr3 41349782 41349898 -176687260 - MER81 DNA DNA 0 114 1 4420 171 22 6 chr3 41349901 41351259 -176685899 - L1MB7 LINE L1 -149 6035 4658 1972 154 58 3 chr3 41351375 41351718 -176685440 - MER57A LTR ERV1 -41 362 1 729 275 81 14 chr3 41351789 41352178 -176684980 - MLT1J LTR MaLR -52 459 1 374 300 121 9 chr3 41352181 41352525 -176684633 + HAL1 LINE L1 1483 1946 -561 2263 120 0 13 chr3 41352739 41353055 -176684103 - AluSx SINE Alu 0 312 1 957 142 8 0 chr3 41353055 41353189 -176683969 - AluJo SINE Alu -177 135 1 704 191 0 60 chr3 41353191 41353359 -176683799 - L1MC4 LINE L1 -407 7635 7478 421 210 0 0 chr3 41353361 41353442 -176683716 + AluJ/FLAM SINE Alu 2 82 -230 901 173 33 107 chr3 41353541 41353813 -176683345 - AluJo SINE Alu -18 294 43 2371 89 25 30 chr3 41354311 41354334 -176682824 + L1PA16 LINE L1 5808 5830 -336 2344 101 0 0 chr3 41354334 41354631 -176682527 + AluSc SINE Alu 1 297 -12 2371 89 25 30 chr3 41354631 41354968 -176682190 + L1PA16 LINE L1 5830 6166 0 355 172 31 0 chr3 41355329 41355405 -176681753 + AluSp SINE Alu 147 211 -92 792 222 59 37 chr3 41355528 41355798 -176681360 + L1ME1 LINE L1 5876 6151 -15 2179 117 0 3 chr3 41355798 41356096 -176681062 - AluSx SINE Alu -15 297 1 1786 182 3 3 chr3 41356401 41356697 -176680461 + AluJo SINE Alu 1 296 -16 271 264 55 36 chr3 41356778 41356888 -176680270 + HAL1b LINE L1 1203 1314 -34 264 349 75 7 chr3 41357063 41357209 -176679949 + MIR3 SINE MIR 21 176 -32 303 164 18 0 chr3 41358442 41358497 -176678661 + L1ME3A LINE L1 5879 5934 -236 878 136 0 0 chr3 41359282 41359414 -176677744 - FLAM_C SINE Alu -1 132 1 2251 254 22 7 chr3 41360224 41360780 -176676378 - L1ME3A LINE L1 -10 6160 5597 732 188 158 6 chr3 41360926 41361091 -176676067 + MER58A DNA MER1_type 32 221 -3 802 73 18 9 chr3 41361402 41361511 -176675647 + AluY SINE Alu 184 293 -18 2323 107 0 7 chr3 41362367 41362676 -176674482 + AluSc SINE Alu 1 307 -2 373 203 47 62 chr3 41362720 41362848 -176674310 + L1MC5 LINE L1 7770 7895 -66 1377 147 14 0 chr3 41363418 41363629 -176673529 - AluSx SINE Alu -13 297 84 1152 144 0 28 chr3 41363735 41363916 -176673242 + AluJo SINE Alu 1 176 -136 535 141 0 0 chr3 41363916 41363994 -176673164 - AluSx SINE Alu -234 79 2 892 229 77 72 chr3 41364532 41364907 -176672251 + MSTD LTR MaLR 17 393 -3 373 167 125 83 chr3 41364907 41365022 -176672136 + MLT1J LTR MaLR 338 461 -50 1384 137 40 0 chr3 41365022 41365249 -176671909 + MER46A DNA MER2_type 1 236 0 373 167 125 83 chr3 41365249 41365270 -176671888 + MLT1J LTR MaLR 461 480 -31 1855 157 4 0 chr3 41365471 41365778 -176671380 + AluJb SINE Alu 1 308 0 231 324 14 0 chr3 41366025 41366096 -176671062 + L2 LINE L2 3242 3313 0 328 307 66 6 chr3 41366294 41366460 -176670698 - L1MC4 LINE L1 -241 7801 7626 316 128 0 0 chr3 41366461 41366508 -176670650 - Alu SINE Alu -7 295 249 307 408 0 0 chr3 41366635 41366835 -176670323 + G-rich Low_complexity Low_complexity 1 200 0 385 246 41 35 chr3 41366904 41367075 -176670083 + L1MC4a LINE L1 5840 6011 -1797 2420 98 0 0 chr3 41367558 41367855 -176669303 + AluSg SINE Alu 1 297 -13 259 163 38 62 chr3 41368133 41368213 -176668945 - U13 snRNA snRNA -26 78 1 769 273 123 46 chr3 41368236 41368650 -176668508 - MLT1J1 LTR MaLR 0 446 1 229 224 15 45 chr3 41368714 41368781 -176668377 - MIR SINE MIR -78 184 120 21 0 0 0 chr3 41369093 41369114 -176668044 + AT_rich Low_complexity Low_complexity 1 21 0 215 325 79 24 chr3 41369479 41369605 -176667553 + MIR3 SINE MIR 15 147 -61 976 269 63 36 chr3 41371187 41371551 -176665607 + LTR33 LTR ERVL 23 396 -125 420 254 48 39 chr3 41371674 41371858 -176665300 + L1MC/D LINE L1 5553 5737 -532 528 237 164 0 chr3 41372139 41372316 -176664842 + MIR SINE MIR 17 222 -40 1702 182 0 3 chr3 41372324 41372621 -176664537 + AluJo SINE Alu 1 296 -16 181 221 265 0 chr3 41372842 41372910 -176664248 + MIR SINE MIR 176 261 -1 1331 272 116 15 chr3 41372995 41373454 -176663704 + MLT1J LTR MaLR 3 507 -4 438 276 79 47 chr3 41373588 41373842 -176663316 + MLT1J LTR MaLR 1 262 -249 323 320 49 16 chr3 41374155 41374277 -176662881 + MLT1K LTR MaLR 24 149 -439 370 264 41 102 chr3 41374392 41374653 -176662505 + MLT1K LTR MaLR 322 545 -43 2222 121 3 10 chr3 41374924 41375238 -176661920 + AluSx SINE Alu 1 312 0 373 233 40 0 chr3 41375600 41375710 -176661448 + MIR SINE MIR 43 160 -66 1767 174 3 7 chr3 41375891 41376189 -176660969 + AluJo SINE Alu 1 297 -15 245 157 20 39 chr3 41377117 41377168 -176659990 - L1ME4a LINE L1 -104 6017 5968 24 85 0 0 chr3 41377186 41377245 -176659913 + AT_rich Low_complexity Low_complexity 1 59 0 780 209 45 6 chr3 41377898 41378075 -176659083 + MER5A DNA MER1_type 4 187 -2 248 204 0 0 chr3 41378371 41378415 -176658743 - L2 LINE L2 -40 3273 3230 4196 163 101 16 chr3 41378452 41379434 -176657724 + L1MB7 LINE L1 5122 6184 0 2152 112 0 37 chr3 41379624 41379946 -176657212 - AluSx SINE Alu -2 310 1 326 71 0 0 chr3 41379946 41379988 -176657170 - Alu SINE Alu -261 42 1 493 182 91 0 chr3 41380309 41380408 -176656750 + L1MA8 LINE L1 5971 6078 -213 437 239 28 102 chr3 41381101 41381277 -176655881 + MIR SINE MIR 79 241 -21 298 282 105 16 chr3 41381310 41381434 -176655724 + L2 LINE L2 3134 3268 -4 1769 162 54 0 chr3 41381942 41382257 -176654901 + MLT1B LTR MaLR 57 388 -2 801 187 47 6 chr3 41383745 41383916 -176653242 + MER5B DNA MER1_type 1 178 0 982 169 0 0 chr3 41384441 41384630 -176652528 - AluJb SINE Alu 0 323 135 358 357 26 7 chr3 41384836 41384990 -176652168 - L2 LINE L2 0 3272 3116 282 264 55 27 chr3 41385300 41385410 -176651748 + MLT1H LTR MaLR 437 549 0 1755 141 28 17 chr3 41385743 41386033 -176651125 - AluJo SINE Alu -19 293 1 2228 86 0 7 chr3 41386312 41386592 -176650566 + AluSc SINE Alu 1 278 -31 213 39 0 0 chr3 41386595 41386621 -176650537 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 643 157 0 26 chr3 41386824 41386977 -176650181 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 278 250 31 0 chr3 41387060 41387124 -176650034 + MIR3 SINE MIR 120 185 -23 830 242 171 10 chr3 41387135 41387428 -176649730 - MER113 DNA MER1_type? 0 521 182 1643 197 10 0 chr3 41387471 41387775 -176649383 + AluJo SINE Alu 1 307 -5 205 250 73 0 chr3 41388017 41388085 -176649073 - MIR SINE MIR -115 93 21 412 284 45 27 chr3 41388222 41388420 -176648738 - MIR SINE MIR -60 202 3 402 260 47 16 chr3 41388436 41388563 -176648595 - L2 LINE L2 -2 3311 3181 2104 119 0 0 chr3 41388605 41388891 -176648267 + AluSg SINE Alu 2 287 -23 304 275 0 22 chr3 41388891 41388982 -176648176 + L1MC4 LINE L1 6615 6703 -1339 * 318 264 23 0 chr3 41388970 41389057 -176648101 + L1MC4 LINE L1 6614 6702 -1340 459 196 0 0 chr3 41389060 41389233 -176647925 + (TA)n Simple_repeat Simple_repeat 2 174 0 303 288 29 35 chr3 41389397 41389567 -176647591 + GA-rich Low_complexity Low_complexity 5 173 0 220 338 0 0 chr3 41389570 41389647 -176647511 - MIR SINE MIR -6 256 180 2624 153 75 42 chr3 41389860 41390325 -176646833 + LTR24B LTR ERV1 3 491 -85 2140 98 18 0 chr3 41390325 41390630 -176646528 - AluSc SINE Alu 0 310 1 2624 153 75 42 chr3 41390630 41390712 -176646446 + LTR24B LTR ERV1 491 569 -7 366 176 15 0 chr3 41390954 41391022 -176646136 - L1ME4a LINE L1 -81 6040 5972 288 267 122 8 chr3 41391253 41391343 -176645815 + L1ME4a LINE L1 5849 5960 -161 4443 137 5 37 chr3 41391343 41392097 -176645061 + L1MB2 LINE L1 5442 6171 0 288 267 122 8 chr3 41392097 41392137 -176645021 + L1ME4a LINE L1 5960 5994 -127 452 206 178 20 chr3 41392173 41392319 -176644839 + MER5A DNA MER1_type 12 180 -9 201 195 0 0 chr3 41392318 41392359 -176644799 + L2 LINE L2 3273 3313 0 * 456 266 101 19 chr3 41393390 41393599 -176643559 + L1MC4a LINE L1 5683 5858 -305 376 248 95 7 chr3 41393710 41393847 -176643311 + MIR SINE MIR 65 213 -49 440 292 0 0 chr3 41394090 41394210 -176642948 - MER117 DNA MER1_type -73 124 5 235 284 165 0 chr3 41394276 41394385 -176642773 + MER94 DNA DNA 4 130 -4 2419 70 3 16 chr3 41394585 41394898 -176642260 + AluSc SINE Alu 1 309 0 5959 77 38 30 chr3 41395218 41396038 -176641120 + LTR12 LTR ERV1 1 826 0 4354 120 22 13 chr3 41396493 41397127 -176640031 + LTR12-int LTR ERV1 1 640 -5306 811 101 34 0 chr3 41397115 41397234 -176639924 + LTR12-int LTR ERV1 1705 1827 -5710 * 22059 100 27 22 chr3 41397240 41397839 -176639319 + MER41-int LTR ERV1 1354 1949 -3997 2368 91 7 0 chr3 41397839 41398137 -176639021 - AluSp SINE Alu -13 300 1 22059 100 27 22 chr3 41398137 41399143 -176638015 + MER41-int LTR ERV1 1949 2949 -2997 1837 171 7 3 chr3 41399143 41399447 -176637711 + AluJb SINE Alu 1 305 -7 22059 100 27 22 chr3 41399447 41399536 -176637622 + MER41-int LTR ERV1 2949 3036 -2910 4770 72 5 3 chr3 41399536 41400157 -176637001 + L1PA8 LINE L1 5548 6169 -3 22059 100 27 22 chr3 41400157 41400874 -176636284 + MER41-int LTR ERV1 3036 3748 -2198 2063 120 33 13 chr3 41400874 41401173 -176635985 + AluSx SINE Alu 6 310 -2 22059 100 27 22 chr3 41401173 41401704 -176635454 + MER41-int LTR ERV1 3748 4319 -1627 2340 106 0 3 chr3 41401704 41402007 -176635151 - AluSg SINE Alu -7 303 2 22059 100 27 22 chr3 41402007 41402370 -176634788 + MER41-int LTR ERV1 4319 4679 -1267 1205 202 6 10 chr3 41402718 41403030 -176634128 + AluY SINE Alu 1 311 0 5959 77 38 30 chr3 41403352 41404172 -176632986 + LTR12 LTR ERV1 1 826 0 844 232 35 89 chr3 41404478 41404652 -176632506 + MLT1H LTR MaLR 200 345 -204 1888 170 13 3 chr3 41404652 41404952 -176632206 + AluJb SINE Alu 1 303 -9 844 232 35 89 chr3 41404952 41405147 -176632011 + MLT1H LTR MaLR 345 549 0 316 329 91 57 chr3 41405297 41405704 -176631454 + L3 LINE CR1 1133 1553 -24 305 267 155 25 chr3 41405830 41405991 -176631167 + MIR SINE MIR 23 204 -58 1918 147 0 10 chr3 41406162 41406454 -176630704 - AluJo SINE Alu -23 289 1 724 189 8 23 chr3 41406479 41406611 -176630547 - FLAM_C SINE Alu -3 130 1 203 157 0 59 chr3 41407147 41407198 -176629960 + CT-rich Low_complexity Low_complexity 5 52 0 243 321 179 13 chr3 41407262 41407486 -176629672 - MIR SINE MIR 0 262 2 1987 158 3 0 chr3 41407641 41407951 -176629207 + AluSx SINE Alu 1 311 -1 190 261 0 0 chr3 41408537 41408583 -176628575 - MER5A DNA MER1_type -141 48 3 2480 80 0 3 chr3 41408589 41408901 -176628257 + AluY SINE Alu 1 311 0 2416 86 0 0 chr3 41409658 41409961 -176627197 + AluY SINE Alu 1 303 -8 1831 144 39 20 chr3 41410264 41410569 -176626589 - AluY SINE Alu 0 311 1 779 117 117 0 chr3 41410569 41410689 -176626469 - AluJb SINE Alu -177 135 2 724 133 0 62 chr3 41410743 41410871 -176626287 + AluSg/x SINE Alu 129 248 -64 25 31 0 0 chr3 41412216 41412248 -176624910 + GC_rich Low_complexity Low_complexity 1 32 0 1781 156 6 22 chr3 41412813 41413127 -176624031 + AluJb SINE Alu 1 309 -3 199 139 70 0 chr3 41413303 41413346 -176623812 - L2 LINE L2 -18 3254 3209 586 177 40 0 chr3 41413372 41413496 -176623662 + MER5B DNA MER1_type 1 129 -49 254 79 53 0 chr3 41413511 41413549 -176623609 - Alu SINE Alu -14 288 249 204 196 18 18 chr3 41413549 41413605 -176623553 + MER5B DNA MER1_type 120 175 -3 1897 119 50 4 chr3 41413675 41413952 -176623206 + AluSq SINE Alu 1 290 -23 2066 144 63 47 chr3 41414286 41414456 -176622702 - LTR39 LTR ERV1 0 783 617 1571 164 89 7 chr3 41414456 41414736 -176622422 + AluJo SINE Alu 1 303 -9 2066 144 63 47 chr3 41414736 41414948 -176622210 - LTR39 LTR ERV1 -166 617 395 1330 181 0 9 chr3 41414948 41415175 -176621983 + AluJb SINE Alu 86 310 -2 2318 128 63 16 chr3 41415175 41415395 -176621763 - LTR39 LTR ERV1 -376 407 160 2056 134 23 0 chr3 41415395 41415700 -176621458 - AluJb SINE Alu 0 312 1 2318 128 63 16 chr3 41415700 41415861 -176621297 - LTR39 LTR ERV1 -623 160 8 827 178 0 0 chr3 41415946 41416075 -176621083 - FLAM_C SINE Alu -14 129 1 1969 89 203 12 chr3 41416215 41416628 -176620530 - LTR14B LTR ERVK 0 608 1 342 256 16 8 chr3 41416754 41416875 -176620283 + L1ME3A LINE L1 5835 5956 -214 1194 78 176 54 chr3 41417280 41417485 -176619673 + MER30 DNA MER1_type 1 230 0 336 285 72 47 chr3 41417579 41417772 -176619386 - MLT1G1-int LTR MaLR -882 489 292 276 294 71 0 chr3 41417814 41417899 -176619259 - MLT1G1-int LTR MaLR -1280 91 1 776 243 81 103 chr3 41417918 41418382 -176618776 - MLT1G1 LTR MaLR 0 530 3 203 258 86 32 chr3 41418395 41418488 -176618670 - MIR SINE MIR -108 154 57 833 308 35 90 chr3 41418518 41418601 -176618557 - L2 LINE L2 -1 3271 3185 1596 149 28 25 chr3 41418601 41418883 -176618275 + AluSx SINE Alu 1 283 -29 833 308 35 90 chr3 41418883 41419833 -176617325 - L2 LINE L2 -87 3185 2274 325 127 73 0 chr3 41419884 41419939 -176617219 + L2 LINE L2 3250 3308 -5 744 145 23 30 chr3 41420140 41420271 -176616887 + FLAM_C SINE Alu 1 130 -3 2257 62 55 0 chr3 41420297 41420586 -176616572 - AluY SINE Alu -6 305 1 675 301 6 0 chr3 41420631 41420807 -176616351 + MER91B DNA MER1_type 14 190 0 1345 150 109 92 chr3 41420931 41420996 -176616162 - MLT1A1 LTR MaLR 0 365 303 1983 154 7 0 chr3 41420996 41421301 -176615857 - AluSx SINE Alu -5 307 1 1345 150 109 92 chr3 41421301 41421464 -176615694 - MLT1A1 LTR MaLR -62 303 126 1526 190 38 10 chr3 41421464 41421753 -176615405 + AluJo SINE Alu 1 297 -15 1345 150 109 92 chr3 41421753 41421882 -176615276 - MLT1A1 LTR MaLR -239 126 1 801 186 0 0 chr3 41422348 41422466 -176614692 + FLAM_C SINE Alu 1 118 -25 2021 126 30 7 chr3 41422481 41422758 -176614400 + AluSx SINE Alu 1 287 -25 186 43 0 0 chr3 41422758 41422781 -176614377 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2021 126 30 7 chr3 41422781 41422805 -176614353 + AluSx SINE Alu 287 309 -3 225 216 0 0 chr3 41423739 41423790 -176613368 + L2 LINE L2 3263 3313 0 1837 156 0 26 chr3 41424125 41424233 -176612925 + AluJo SINE Alu 1 110 -202 1941 156 24 19 chr3 41424233 41424604 -176612554 - THE1C LTR MaLR -2 373 1 1837 156 0 26 chr3 41424604 41424803 -176612355 + AluJo SINE Alu 110 300 -12 1964 151 0 0 chr3 41425625 41425971 -176611187 + AluSq SINE Alu 1 346 0 525 255 28 0 chr3 41425972 41426117 -176611041 - L1M4 LINE L1 -843 5303 5155 1685 183 0 29 chr3 41426118 41426424 -176610734 - AluJo SINE Alu -15 297 1 1937 169 36 22 chr3 41426477 41426839 -176610319 + MLT1D LTR MaLR 139 505 0 462 240 8 8 chr3 41426847 41426968 -176610190 - L1M4 LINE L1 -1260 4886 4766 2111 109 46 0 chr3 41426975 41427260 -176609898 - AluSx SINE Alu -13 299 2 1216 251 49 2 chr3 41427426 41427837 -176609321 + L1M4 LINE L1 4181 4610 -1536 641 167 0 0 chr3 41427877 41427973 -176609185 - AluS SINE Alu -216 97 2 27 0 0 0 chr3 41429134 41429161 -176607997 + AT_rich Low_complexity Low_complexity 1 27 0 1621 134 49 65 chr3 41429508 41429660 -176607498 - MER50 LTR ERV1 0 734 588 730 33 0 0 chr3 41429660 41429750 -176607408 + L1PA4 LINE L1 6063 6152 -3 1621 134 49 65 chr3 41429750 41429904 -176607254 - MER50 LTR ERV1 -146 588 433 1041 143 30 0 chr3 41429906 41430074 -176607084 - MER50 LTR ERV1 -500 234 62 558 0 0 0 chr3 41430074 41430136 -176607022 + (TG)n Simple_repeat Simple_repeat 2 63 0 288 65 109 22 chr3 41430189 41430235 -176606923 - MSTC LTR MaLR -372 56 7 206 162 27 0 chr3 41430494 41430531 -176606627 + (TATG)n Simple_repeat Simple_repeat 2 39 0 227 328 62 8 chr3 41430590 41430718 -176606440 - L2 LINE L2 -809 2505 2371 691 199 115 0 chr3 41431272 41431428 -176605730 + FAM SINE Alu 2 175 0 2092 62 0 0 chr3 41431776 41432034 -176605124 + L1PA7 LINE L1 5897 6154 0 1550 183 32 11 chr3 41432632 41432916 -176604242 + AluJo SINE Alu 1 290 -22 814 73 15 0 chr3 41432916 41433052 -176604106 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 5659 214 61 37 chr3 41433208 41434290 -176602868 + L1MB8 LINE L1 3249 4304 -1842 2097 101 59 0 chr3 41434290 41434577 -176602581 + AluSq SINE Alu 1 304 -9 5659 214 61 37 chr3 41434577 41435010 -176602148 + L1MB8 LINE L1 4304 4808 -1338 1157 182 81 69 chr3 41435010 41435345 -176601813 + MER44D DNA MER2_type 1 609 0 5659 214 61 37 chr3 41435345 41435453 -176601705 + L1MB8 LINE L1 4808 4912 -1234 4494 156 38 19 chr3 41435453 41435558 -176601600 + LTR39 LTR ERV1 1 103 -680 2573 121 3 0 chr3 41435558 41435921 -176601237 - THE1B LTR MaLR 0 364 1 4494 156 38 19 chr3 41435921 41436276 -176600882 + LTR39 LTR ERV1 103 483 -300 1747 158 39 3 chr3 41436276 41436560 -176600598 - AluJb SINE Alu -18 294 1 4494 156 38 19 chr3 41436560 41436867 -176600291 + LTR39 LTR ERV1 483 783 0 270 86 0 0 chr3 41436867 41436902 -176600256 + L1MB8 LINE L1 4909 4943 -1203 1416 186 93 21 chr3 41436908 41437061 -176600097 + L1MB8 LINE L1 5124 5265 -913 1816 164 3 19 chr3 41437061 41437372 -176599786 - AluJo SINE Alu -6 306 1 1416 186 93 21 chr3 41437372 41437728 -176599430 + L1MB8 LINE L1 5265 5677 -501 379 301 80 40 chr3 41437730 41437830 -176599328 + MER92C LTR ERV1 6 117 -437 2028 166 10 42 chr3 41437830 41438233 -176598925 + MLT1B LTR MaLR 1 390 0 379 301 80 40 chr3 41438233 41438308 -176598850 + MER92C LTR ERV1 117 188 -366 346 254 0 0 chr3 41438371 41438442 -176598716 + MER92C LTR ERV1 484 554 0 1827 194 96 15 chr3 41438443 41438912 -176598246 + L1MB8 LINE L1 5671 6177 -1 290 298 0 54 chr3 41440036 41440204 -176596954 + T-rich Low_complexity Low_complexity 2 160 0 936 177 0 19 chr3 41440344 41440502 -176596656 - FRAM SINE Alu -9 157 3 2328 78 3 0 chr3 41440869 41441197 -176595961 - AluSq SINE Alu 0 329 1 520 328 39 11 chr3 41441254 41441434 -176595724 - MIR3 SINE MIR -6 202 18 261 223 160 32 chr3 41441552 41441646 -176595512 + MIR SINE MIR 53 158 -104 398 292 36 6 chr3 41441775 41441943 -176595215 + MIR SINE MIR 78 250 -12 44073 49 2 2 chr3 41442457 41448610 -176588548 - L1PA4 LINE L1 -1 6154 1 1175 210 69 57 chr3 41448683 41449138 -176588020 - MLT1B LTR MaLR 0 390 2 345 303 28 0 chr3 41449239 41449348 -176587810 - MIR3 SINE MIR -7 201 90 365 238 112 42 chr3 41449528 41449671 -176587487 - MIR SINE MIR -47 215 63 1425 160 0 95 chr3 41450274 41450580 -176586578 - AluJb SINE Alu 0 312 36 1924 116 78 0 chr3 41450611 41450895 -176586263 + AluSq SINE Alu 1 306 -7 1469 223 67 85 chr3 41450941 41451059 -176586099 + MLT1D LTR MaLR 2 121 -384 2362 81 10 0 chr3 41451059 41451356 -176585802 + AluSq SINE Alu 1 300 -13 1469 223 67 85 chr3 41451356 41451743 -176585415 + MLT1D LTR MaLR 121 498 -7 849 182 0 0 chr3 41451995 41452138 -176585020 + FLAM_C SINE Alu 1 143 0 328 291 45 2 chr3 41452143 41452324 -176584834 + L1ME LINE L1 4643 4832 -1314 2310 107 0 3 chr3 41452821 41453129 -176584029 + AluSx SINE Alu 5 311 -1 2079 112 10 3 chr3 41453177 41453481 -176583677 + AluY SINE Alu 1 306 -5 270 261 83 89 chr3 41453521 41453822 -176583336 + L1ME LINE L1 5567 5867 -297 1399 67 0 0 chr3 41453822 41454001 -176583157 + L1PA8 LINE L1 5992 6170 -2 270 261 83 89 chr3 41454001 41454025 -176583133 + L1ME LINE L1 5867 5890 -274 213 186 47 0 chr3 41454372 41454415 -176582743 + L2 LINE L2 3223 3267 -5 24 53 0 0 chr3 41454909 41454947 -176582211 + AT_rich Low_complexity Low_complexity 1 38 0 364 217 22 11 chr3 41455172 41455264 -176581894 + LTR33 LTR ERVL 1 93 -428 204 306 83 19 chr3 41455922 41456079 -176581079 + L2 LINE L2 2890 3056 -216 2689 196 65 24 chr3 41456191 41456827 -176580331 + LTR65 LTR ERV1 8 669 0 219 186 0 0 chr3 41456880 41456923 -176580235 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 406 265 60 0 chr3 41457001 41457118 -176580040 + MIR SINE MIR 28 151 -111 282 57 0 0 chr3 41457324 41457359 -176579799 - U2 snRNA snRNA -153 35 1 696 195 32 0 chr3 41457466 41457620 -176579538 + LTR37A LTR ERV1 268 426 0 223 261 254 23 chr3 41458580 41458710 -176578448 - MIR SINE MIR -71 191 32 2196 113 7 3 chr3 41459403 41459704 -176577454 + AluSp SINE Alu 1 302 -11 253 278 56 0 chr3 41460902 41460974 -176576184 - MIR SINE MIR -70 192 117 1697 156 19 35 chr3 41460977 41461291 -176575867 + AluJo SINE Alu 1 309 -3 2072 103 24 21 chr3 41461510 41461801 -176575357 + AluSc SINE Alu 3 294 -15 23 33 0 0 chr3 41462242 41462272 -176574886 + AT_rich Low_complexity Low_complexity 1 30 0 288 309 53 0 chr3 41462996 41463090 -176574068 + MIR3 SINE MIR 58 156 -52 4589 65 36 3 chr3 41463258 41464258 -176572900 + MER11A LTR ERVK 1 1266 0 378 0 0 0 chr3 41464527 41464569 -176572589 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 3391 217 45 52 chr3 41464660 41465354 -176571804 - L1ME1 LINE L1 -9 6157 5459 348 24 0 0 chr3 41465354 41465395 -176571763 + (TG)n Simple_repeat Simple_repeat 2 42 0 3391 217 45 52 chr3 41465395 41465561 -176571597 - L1ME1 LINE L1 -707 5459 5301 2286 72 11 0 chr3 41465561 41465902 -176571256 + AluSp SINE Alu 3 346 0 3391 217 45 52 chr3 41465902 41466048 -176571110 - L1ME1 LINE L1 -865 5301 5155 1685 183 0 29 chr3 41466049 41466355 -176570803 - AluJo SINE Alu -15 297 1 1960 169 36 17 chr3 41466408 41466768 -176570390 + MLT1D LTR MaLR 139 505 0 462 240 8 8 chr3 41466776 41466897 -176570261 - L1ME1 LINE L1 -1260 4886 4766 2111 109 46 0 chr3 41466904 41467189 -176569969 - AluSx SINE Alu -13 299 2 1216 251 49 2 chr3 41467355 41467766 -176569392 + L1M4 LINE L1 4181 4610 -1536 641 167 0 0 chr3 41467806 41467902 -176569256 - AluS SINE Alu -216 97 2 1109 97 7 0 chr3 41469003 41469147 -176568011 - AluSg SINE Alu -165 145 1 399 292 95 6 chr3 41469161 41469419 -176567739 - L2 LINE L2 -243 3070 2786 902 245 81 2 chr3 41469436 41469848 -176567310 + L1MC4 LINE L1 6927 7419 -623 225 132 0 0 chr3 41470019 41470057 -176567101 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 1751 184 3 19 chr3 41470256 41470571 -176566587 - AluJb SINE Alu -2 310 1 2144 123 0 3 chr3 41471512 41471814 -176565344 - AluSx SINE Alu -11 301 1 526 255 127 86 chr3 41471842 41472203 -176564955 - L2 LINE L2 0 3272 2897 1694 153 33 0 chr3 41472254 41472528 -176564630 + AluJb SINE Alu 1 283 -29 405 0 0 0 chr3 41472528 41472573 -176564585 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 219 242 0 30 chr3 41472590 41472621 -176564537 + GA-rich Low_complexity Low_complexity 4 34 -33 2438 90 3 0 chr3 41472621 41472931 -176564227 + AluSp SINE Alu 1 311 -2 219 242 0 30 chr3 41472931 41472965 -176564193 + GA-rich Low_complexity Low_complexity 34 67 0 219 270 68 101 chr3 41472972 41473120 -176564038 - L2 LINE L2 -470 2844 2704 2268 61 4 7 chr3 41473120 41473419 -176563739 + AluY SINE Alu 3 300 0 219 270 68 101 chr3 41473419 41473506 -176563652 - L2 LINE L2 -610 2704 2616 415 168 192 8 chr3 41474118 41474243 -176562915 - HAL1 LINE L1 -66 2441 2294 249 196 223 76 chr3 41474255 41474431 -176562727 - L1MC4a LINE L1 -1647 6161 5944 3549 111 0 34 chr3 41474431 41474933 -176562225 + MER75 DNA T2_type 2 487 -27 2001 151 3 3 chr3 41474933 41475245 -176561913 - AluSx SINE Alu 0 312 1 3549 111 0 34 chr3 41475245 41475273 -176561885 + MER75 DNA T2_type 487 514 0 249 196 223 76 chr3 41475273 41475320 -176561838 - L1MC4a LINE L1 -1864 5944 5905 766 294 102 10 chr3 41475323 41475616 -176561542 - MLT1I LTR MaLR 0 409 90 339 184 69 23 chr3 41475628 41475715 -176561443 - MLT1I LTR MaLR -229 180 90 2794 94 102 0 chr3 41475725 41476118 -176561040 + LTR3b LTR ERVK 1 433 -4 889 133 202 21 chr3 41476227 41476415 -176560743 + HERVK3 LTR ERVK 51 272 -6971 * 898 197 50 20 chr3 41476412 41476610 -176560548 + HERVK3 LTR ERVK 477 680 -6563 542 162 10 30 chr3 41476598 41476697 -176560461 + HERVK3 LTR ERVK 1321 1417 -5826 * 5507 179 2 5 chr3 41476689 41477901 -176559257 + HERVK3 LTR ERVK 1859 3139 -4104 1404 157 0 10 chr3 41477887 41478142 -176559016 + HERVK3 LTR ERVK 5130 5572 -373 * 2971 72 43 65 chr3 41478180 41478623 -176558535 + LTR3b LTR ERVK 1 433 -4 261 217 116 0 chr3 41478706 41478775 -176558383 - L1MC4a LINE L1 -1902 5906 5830 1357 199 62 33 chr3 41478782 41479118 -176558040 + MLT1A1 LTR MaLR 1 346 -19 973 286 33 31 chr3 41479155 41479248 -176557910 - L1MC4a LINE L1 -2056 5752 5661 4045 126 47 83 chr3 41479248 41480063 -176557095 + LTR1 LTR ERV1 1 785 0 973 286 33 31 chr3 41480063 41480077 -176557081 - L1MC4a LINE L1 -2147 5661 5649 2292 94 82 15 chr3 41480077 41480418 -176556740 + THE1B LTR MaLR 1 364 0 973 286 33 31 chr3 41480418 41480669 -176556489 - L1MC4a LINE L1 -2159 5649 5392 2392 97 0 3 chr3 41480851 41481161 -176555997 + AluSc SINE Alu 1 309 0 374 302 122 9 chr3 41481375 41481719 -176555439 - HAL1 LINE L1 -561 1946 1483 729 275 81 14 chr3 41481722 41482111 -176555047 + MLT1J LTR MaLR 1 459 -52 2167 154 55 3 chr3 41482182 41482565 -176554593 + MER57A LTR ERV1 1 403 0 289 271 126 62 chr3 41482597 41483018 -176554140 - HAL1 LINE L1 -1052 1455 1008 867 222 0 14 chr3 41483167 41483383 -176553775 - L1MA4 LINE L1 -4 6296 6084 2125 133 39 33 chr3 41483621 41483983 -176553175 + THE1B LTR MaLR 1 364 0 1873 154 38 7 chr3 41484278 41484570 -176552588 + AluJb SINE Alu 1 301 -11 1317 233 74 45 chr3 41484702 41485188 -176551970 + LTR24B LTR ERV1 70 569 -7 232 352 57 39 chr3 41485190 41485471 -176551687 + L1ME4a LINE L1 5296 5581 -540 2344 58 31 0 chr3 41485498 41485790 -176551368 + AluY SINE Alu 1 301 -10 33 0 0 0 chr3 41485866 41485899 -176551259 + AT_rich Low_complexity Low_complexity 1 33 0 325 326 138 16 chr3 41485925 41486170 -176550988 + L1ME4a LINE L1 5780 6070 -51 2098 161 93 65 chr3 41486170 41486666 -176550492 + LTR54 LTR ERV1 1 510 0 325 326 138 16 chr3 41486666 41486724 -176550434 + L1ME4a LINE L1 6070 6120 -1 2055 198 128 48 chr3 41487342 41488013 -176549145 - MER50 LTR ERV1 0 734 10 4392 116 21 45 chr3 41488057 41488763 -176548395 + LTR8 LTR ERV1 1 689 -2 1419 161 106 69 chr3 41488825 41488946 -176548212 - LTR7 LTR ERV1 0 450 335 2426 78 3 0 chr3 41488946 41489242 -176547916 - AluY SINE Alu -14 297 1 1419 161 106 69 chr3 41489242 41489554 -176547604 - LTR7 LTR ERV1 -115 335 1 23906 217 34 37 chr3 41489554 41497399 -176539759 - HERVH LTR ERV1 0 7713 1 1257 164 89 115 chr3 41497399 41497861 -176539297 - LTR7 LTR ERV1 0 450 1 628 210 68 139 chr3 41497929 41498080 -176539078 - MER110A LTR ERV1 0 468 351 1210 167 196 54 chr3 41498080 41498523 -176538635 - LTR54 LTR ERV1 0 510 5 628 210 68 139 chr3 41498523 41498695 -176538463 - MER110A LTR ERV1 -117 351 168 1353 167 110 17 chr3 41498809 41499108 -176538050 - MER31B LTR ERV1 0 466 140 453 36 0 0 chr3 41499109 41499164 -176537994 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 412 191 45 0 chr3 41499164 41499253 -176537905 - AluSg/x SINE Alu -3 309 217 1040 82 24 6 chr3 41499260 41499430 -176537728 + (TTTC)n Simple_repeat Simple_repeat 3 175 0 1557 181 0 29 chr3 41499431 41499712 -176537446 - AluJb SINE Alu -39 273 1 710 182 7 27 chr3 41499713 41499861 -176537297 - MER31B LTR ERV1 -321 145 1 894 230 90 50 chr3 41500443 41500843 -176536315 + LTR56 LTR ERV1 9 424 -21 452 139 0 0 chr3 41500812 41500884 -176536274 + LTR24B LTR ERV1 498 569 -7 * 1922 154 3 7 chr3 41501048 41501354 -176535804 + AluJb SINE Alu 1 305 -7 2030 135 51 38 chr3 41501362 41501732 -176535426 - THE1C LTR MaLR 0 375 1 2107 115 11 0 chr3 41502905 41503183 -176533975 + AluSx SINE Alu 3 318 0 201 57 0 29 chr3 41503183 41503218 -176533940 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 343 250 26 0 chr3 41503270 41503346 -176533812 - MER2 DNA MER2_type -1 344 267 1783 171 0 11 chr3 41503380 41503667 -176533491 + AluJb SINE Alu 12 295 -17 206 135 0 27 chr3 41503674 41503711 -176533447 + (TTCTC)n Simple_repeat Simple_repeat 5 40 0 26 0 0 0 chr3 41503712 41503738 -176533420 + AT_rich Low_complexity Low_complexity 1 26 0 368 313 156 35 chr3 41503936 41504307 -176532851 - L2 LINE L2 -2 3270 2855 2119 92 3 57 chr3 41504318 41504634 -176532524 - AluSp SINE Alu -14 299 1 571 211 111 80 chr3 41505180 41505379 -176531779 - L1ME3A LINE L1 -27 6143 5939 1891 157 20 0 chr3 41505379 41505672 -176531486 - AluJo SINE Alu -13 299 1 2250 80 0 14 chr3 41505682 41506001 -176531157 - AluSg SINE Alu 0 315 1 2069 124 7 0 chr3 41506009 41506291 -176530867 - AluSg SINE Alu -26 284 1 1369 171 13 81 chr3 41506319 41506629 -176530529 + AluJo SINE Alu 1 289 -23 2045 139 14 0 chr3 41506681 41506976 -176530182 + AluSx SINE Alu 1 299 -13 380 245 80 18 chr3 41506976 41507139 -176530019 - L1MC4 LINE L1 -28 8014 7842 2251 134 24 21 chr3 41507543 41507917 -176529241 + THE1C LTR MaLR 1 375 0 3768 138 44 13 chr3 41507953 41508569 -176528589 - MER41B LTR ERV1 0 635 1 8598 104 30 12 chr3 41508569 41509824 -176527334 - MER41B-int LTR ERV1 0 5946 4669 1727 133 32 7 chr3 41509824 41510102 -176527056 + AluSg SINE Alu 13 297 -13 3855 131 23 10 chr3 41510202 41510807 -176526351 - MER41B LTR ERV1 -22 613 1 2196 101 17 0 chr3 41510890 41511186 -176525972 + AluSq SINE Alu 1 301 -12 3807 118 31 54 chr3 41511366 41511532 -176525626 + MER41B LTR ERV1 1 169 -466 2604 58 0 10 chr3 41511532 41511841 -176525317 + AluY SINE Alu 1 306 -5 3807 118 31 54 chr3 41511841 41512221 -176524937 + MER41B LTR ERV1 169 532 -103 1509 164 95 0 chr3 41512221 41512495 -176524663 + AluJb SINE Alu 1 300 -12 3807 118 31 54 chr3 41512495 41512597 -176524561 + MER41B LTR ERV1 532 635 0 524 194 104 0 chr3 41512616 41512750 -176524408 + MIR SINE MIR 59 206 -56 650 238 68 0 chr3 41513251 41513398 -176523760 - FRAM SINE Alu -9 157 1 601 143 61 0 chr3 41513521 41513619 -176523539 - HY1 scRNA scRNA -3 109 6 2321 92 7 3 chr3 41514732 41515037 -176522121 - AluSp SINE Alu -7 306 1 55 16 0 0 chr3 41515073 41515135 -176522023 + AT_rich Low_complexity Low_complexity 1 62 0 2264 78 10 86 chr3 41515389 41515772 -176521386 - L1PA16 LINE L1 -9 6157 5804 3956 104 116 34 chr3 41515857 41516946 -176520212 + MER11A LTR ERVK 1 1232 -4 211 407 34 0 chr3 41516983 41517101 -176520057 - L2 LINE L2 -188 3084 2963 1676 238 51 16 chr3 41517101 41517533 -176519625 - MLT1G LTR MaLR 0 590 144 2145 128 6 6 chr3 41517537 41517849 -176519309 + AluSx SINE Alu 1 312 0 228 131 0 131 chr3 41517913 41517974 -176519184 - MLT1G LTR MaLR -415 134 82 1815 165 0 3 chr3 41518652 41518943 -176518215 - AluJo SINE Alu -22 290 1 566 185 0 0 chr3 41518987 41519079 -176518079 - AluSc SINE Alu -95 214 123 2189 115 0 0 chr3 41519084 41519372 -176517786 - AluSx SINE Alu -24 288 1 397 146 31 73 chr3 41519373 41519469 -176517689 - L1M4 LINE L1 -506 5668 5577 251 268 202 35 chr3 41519511 41519652 -176517506 - L1M4 LINE L1 -2347 3799 3636 2232 104 0 13 chr3 41519824 41520122 -176517036 - AluSg SINE Alu -16 294 1 186 118 0 0 chr3 41520134 41520168 -176516990 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2107 120 0 10 chr3 41520168 41520450 -176516708 - AluSg SINE Alu -25 285 5 1118 228 20 63 chr3 41520646 41520875 -176516283 - L1MB8 LINE L1 -10 6168 5958 1890 161 17 3 chr3 41520875 41521173 -176515985 + AluSx SINE Alu 1 302 -10 1118 228 20 63 chr3 41521173 41521294 -176515864 - L1MB8 LINE L1 -220 5958 5833 359 329 27 13 chr3 41521345 41521494 -176515664 - L1MEc LINE L1 -5908 488 338 831 136 0 8 chr3 41522004 41522129 -176515029 - FLAM_C SINE Alu -9 124 1 1145 121 6 12 chr3 41522647 41522820 -176514338 - FRAM SINE Alu -4 172 1 1676 181 3 3 chr3 41523149 41523437 -176513721 + AluJo SINE Alu 1 288 -24 1423 145 16 8 chr3 41523466 41523708 -176513450 + L1MB3 LINE L1 5925 6168 -15 2137 141 0 0 chr3 41523911 41524216 -176512942 - AluSq SINE Alu -8 305 1 1837 156 0 26 chr3 41525037 41525236 -176511922 - AluJo SINE Alu -12 300 110 1941 156 24 19 chr3 41525236 41525607 -176511551 + THE1C LTR MaLR 1 373 -2 1837 156 0 26 chr3 41525607 41525715 -176511443 - AluJo SINE Alu -202 110 1 225 216 0 0 chr3 41526050 41526101 -176511057 - L2 LINE L2 0 3313 3263 2021 126 30 7 chr3 41527036 41527060 -176510098 - AluSx SINE Alu -3 309 287 186 43 0 0 chr3 41527060 41527083 -176510075 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2021 126 30 7 chr3 41527083 41527360 -176509798 - AluSx SINE Alu -25 287 1 801 186 0 0 chr3 41527375 41527493 -176509665 - FLAM_C SINE Alu -25 118 1 2252 96 28 0 chr3 41527829 41528120 -176509038 + AluSx SINE Alu 1 299 -13 2276 94 13 7 chr3 41528391 41528699 -176508459 - AluSx SINE Alu -2 310 1 188 45 0 0 chr3 41528845 41528867 -176508291 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2395 93 0 3 chr3 41629041 41629352 -176407806 + AluSx SINE Alu 1 310 -2 1883 133 0 29 chr3 41630033 41630341 -176406817 + AluSq SINE Alu 1 299 -14 409 132 0 0 chr3 41630521 41630589 -176406569 + MER2 DNA MER2_type 139 206 -139 363 276 0 0 chr3 41630616 41630692 -176406466 + MER2 DNA MER2_type 270 345 0 441 0 0 0 chr3 41631577 41631626 -176405532 + (CA)n Simple_repeat Simple_repeat 2 50 0 324 0 0 0 chr3 41631710 41631746 -176405412 + (CA)n Simple_repeat Simple_repeat 2 37 0 224 180 33 0 chr3 41631774 41631835 -176405323 + (CA)n Simple_repeat Simple_repeat 2 64 0 1628 169 74 0 chr3 41632239 41632523 -176404635 - AluJo SINE Alu -7 305 1 522 331 16 23 chr3 41634120 41634377 -176402781 - L1ME LINE L1 -516 5605 5351 326 323 102 0 chr3 41634416 41634583 -176402575 + L1ME4a LINE L1 5766 5949 -172 1614 105 4 9 chr3 41635294 41635523 -176401635 + AluSg/x SINE Alu 85 312 0 502 221 38 8 chr3 41635540 41635671 -176401487 + L1ME4a LINE L1 5976 6110 -11 1044 143 18 18 chr3 41635684 41635852 -176401306 - FRAM SINE Alu -4 172 5 2250 95 14 0 chr3 41636877 41637171 -176399987 - AluSx SINE Alu -14 298 1 184 250 0 0 chr3 41637382 41637426 -176399732 - L2 LINE L2 -11 3261 3218 * 256 302 107 31 chr3 41637396 41637555 -176399603 - MIR SINE MIR -19 243 73 1510 169 95 21 chr3 41637772 41638110 -176399048 + MLT1A1 LTR MaLR 1 363 -2 233 339 0 17 chr3 41638285 41638403 -176398755 + L1MB2 LINE L1 5254 5369 -2439 394 241 106 53 chr3 41638759 41638929 -176398229 - MIR3 SINE MIR 0 208 30 236 200 161 15 chr3 41639174 41639304 -176397854 - L1ME4a LINE L1 -155 5966 5818 2157 120 0 0 chr3 41639311 41639602 -176397556 + AluSx SINE Alu 9 299 -13 1822 173 0 10 chr3 41640031 41640332 -176396826 + AluJb SINE Alu 1 298 -14 1774 174 0 17 chr3 41640728 41641027 -176396131 + AluJb SINE Alu 1 294 -18 805 331 49 39 chr3 41641090 41641576 -176395582 + L2 LINE L2 2819 3309 -4 936 161 1 105 chr3 41641632 41641887 -176395271 + L1MB2 LINE L1 5935 6164 -7 1181 193 15 0 chr3 41642279 41642481 -176394677 + AluJo SINE Alu 87 291 -21 2302 91 0 26 chr3 41643285 41643593 -176393565 + AluSx SINE Alu 1 300 -12 625 264 137 18 chr3 41644120 41644347 -176392811 - MIR SINE MIR 0 262 9 229 207 27 140 chr3 41644391 41644541 -176392617 + HAL1b LINE L1 597 729 -619 481 181 14 116 chr3 41644541 41644636 -176392522 + MER96B DNA MER1_type? 1 79 -338 950 223 6 0 chr3 41644636 41644802 -176392356 - FAM SINE Alu -8 167 1 481 181 14 116 chr3 41644802 41644844 -176392314 + MER96B DNA MER1_type? 79 124 -293 201 174 43 14 chr3 41644849 41644918 -176392240 + GA-rich Low_complexity Low_complexity 3 73 0 715 217 89 84 chr3 41644972 41645396 -176391762 + MLT1A2 LTR MaLR 1 374 0 691 148 15 163 chr3 41645396 41645599 -176391559 - MER96B DNA MER1_type? -242 175 3 2064 115 14 7 chr3 41645621 41645917 -176391241 - AluSg SINE Alu -12 298 1 399 228 81 0 chr3 41649179 41649302 -176387856 + Charlie8 DNA MER1_type 38 170 -2247 551 163 31 75 chr3 41650560 41650720 -176386438 - MIR SINE MIR -46 216 64 1509 167 118 7 chr3 41652616 41652921 -176384237 - MER44D DNA MER2_type 0 609 1 1366 171 5 0 chr3 41653627 41653844 -176383314 - MER58A DNA MER1_type 0 224 7 248 286 86 43 chr3 41654191 41654331 -176382827 - L1ME LINE L1 -574 5547 5402 541 173 0 18 chr3 41654983 41655093 -176382065 + L1MD3 LINE L1 7758 7865 -130 825 163 7 7 chr3 41655137 41655278 -176381880 + L1PB1 LINE L1 5998 6138 -13 21 0 0 0 chr3 41655280 41655301 -176381857 + AT_rich Low_complexity Low_complexity 1 21 0 856 182 136 6 chr3 41655944 41656120 -176381038 + MER63A DNA MER1_type 2 200 -10 388 296 129 36 chr3 41657138 41657549 -176379609 - L2 LINE L2 -50 3222 2763 320 235 110 44 chr3 41658152 41658288 -176378870 - MIR SINE MIR -20 242 98 222 37 0 0 chr3 41658352 41658376 -176378782 + (GGGAGA)n Simple_repeat Simple_repeat 1 51 0 222 37 0 0 chr3 41658376 41658403 -176378755 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 226 236 18 0 chr3 41658411 41658466 -176378692 + GA-rich Low_complexity Low_complexity 4 59 0 1756 209 83 5 chr3 41659632 41659795 -176377363 + MER47B DNA MER2_type 1 150 -2173 1456 142 63 32 chr3 41659795 41660048 -176377110 - AluJo SINE Alu -17 295 35 1756 209 83 5 chr3 41660048 41660064 -176377094 + MER47B DNA MER2_type 150 163 -2160 2198 151 56 58 chr3 41660064 41660274 -176376884 + MSTB1 LTR MaLR 4 213 -219 1938 130 0 21 chr3 41660274 41660558 -176376600 + AluJb SINE Alu 7 284 -28 539 29 0 14 chr3 41660558 41660628 -176376530 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2198 151 56 58 chr3 41660628 41660846 -176376312 + MSTB1 LTR MaLR 211 432 0 1756 209 83 5 chr3 41660846 41661052 -176376106 + MER47B DNA MER2_type 163 417 -1 380 189 151 19 chr3 41661407 41661513 -176375645 + MIR SINE MIR 65 184 -78 2581 58 0 3 chr3 41661660 41661969 -176375189 + AluY SINE Alu 1 308 -3 2899 7 0 0 chr3 41663796 41664105 -176373053 + AluYb8 SINE Alu 1 309 -9 374 0 0 21 chr3 41664779 41664826 -176372332 + (TG)n Simple_repeat Simple_repeat 1 46 0 2523 161 61 36 chr3 41665499 41666007 -176371151 + MER41B LTR ERV1 114 475 -11 1677 188 16 10 chr3 41667208 41667516 -176369642 + AluJo SINE Alu 1 310 -2 279 79 0 0 chr3 41668326 41668364 -176368794 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 297 291 149 0 chr3 41668367 41668508 -176368650 - L2 LINE L2 -9 3304 3143 1758 159 6 62 chr3 41668512 41668832 -176368326 + AluJb SINE Alu 1 302 -10 329 314 16 8 chr3 41669322 41669443 -176367715 + CT-rich Low_complexity Low_complexity 3 124 0 1736 142 37 24 chr3 41671079 41671375 -176365783 + AluJb SINE Alu 1 300 -12 2161 118 14 0 chr3 41672016 41672313 -176364845 - AluSx SINE Alu -11 301 1 2247 121 0 0 chr3 41672358 41672655 -176364503 - AluSg SINE Alu -12 298 2 488 308 107 18 chr3 41672771 41673099 -176364059 + L1ME4a LINE L1 5494 5850 -271 2011 148 48 9 chr3 41673173 41673504 -176363654 - MER2 DNA MER2_type 0 344 1 400 159 16 0 chr3 41673509 41673572 -176363586 + Tigger2 DNA MER2_type 4 67 -2651 * 2019 118 101 27 chr3 41673564 41673786 -176363372 + Tigger2 DNA MER2_type 2273 2534 -184 2139 129 10 6 chr3 41673786 41674097 -176363061 + AluSx SINE Alu 1 312 0 2019 118 101 27 chr3 41674097 41674239 -176362919 + Tigger2 DNA MER2_type 2534 2664 -54 2862 134 92 29 chr3 41674795 41674836 -176362322 - MER34C LTR ERV1 -2 583 546 4492 152 40 4 chr3 41674836 41675533 -176361625 - MER72 LTR ERV1 0 722 1 2862 134 92 29 chr3 41675533 41676036 -176361122 - MER34C LTR ERV1 -39 546 5 1475 202 75 62 chr3 41676252 41676707 -176360451 - MLT1C LTR MaLR -4 463 3 379 241 106 7 chr3 41677063 41677204 -176359954 - L1MC5 LINE L1 -48 7913 7759 337 306 66 10 chr3 41677214 41677410 -176359748 + L1ME4a LINE L1 5861 6067 -54 1785 219 13 11 chr3 41678674 41679053 -176358105 + L1MDb LINE L1 659 1038 -5371 941 182 19 0 chr3 41679062 41679221 -176357937 + MER58B DNA MER1_type 180 341 0 1286 235 106 37 chr3 41679913 41680347 -176356811 - MER110A LTR ERV1 0 468 5 1966 120 27 20 chr3 41680363 41680662 -176356496 + AluSp SINE Alu 1 301 -12 183 268 0 0 chr3 41682090 41682131 -176355027 - L2 LINE L2 -12 3301 3261 293 281 75 20 chr3 41682217 41682363 -176354795 - MER20 DNA MER1_type -1 218 65 302 0 0 26 chr3 41682433 41682472 -176354686 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1665 159 11 11 chr3 41682473 41682656 -176354502 - AluJb SINE Alu 0 310 125 207 24 24 48 chr3 41682656 41682698 -176354460 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1665 159 11 11 chr3 41682698 41682824 -176354334 - AluJb SINE Alu -184 126 1 308 261 113 91 chr3 41683476 41683646 -176353512 - L2 LINE L2 -58 3255 3077 2028 122 3 7 chr3 41683646 41683949 -176353209 - AluSx SINE Alu -10 302 1 308 261 113 91 chr3 41683949 41684008 -176353150 - L2 LINE L2 -236 3077 3021 326 41 0 20 chr3 41684682 41684731 -176352427 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr3 41687128 41687149 -176350009 + AT_rich Low_complexity Low_complexity 1 21 0 314 246 8 76 chr3 41689925 41690043 -176347115 + L2 LINE L2 2904 3013 -300 1991 160 0 0 chr3 41690385 41690679 -176346479 + AluJo SINE Alu 3 296 -16 868 121 8 30 chr3 41690742 41690874 -176346284 - FLAM_C SINE Alu -4 129 1 2333 87 10 7 chr3 41691446 41691755 -176345403 + AluY SINE Alu 1 310 -1 976 203 149 100 chr3 41691941 41692430 -176344728 - MER34B LTR ERV1 -48 517 5 229 321 69 63 chr3 41692442 41692601 -176344557 - MIR3 SINE MIR -46 162 3 1795 151 36 4 chr3 41693430 41693708 -176343450 - AluJb SINE Alu -25 287 1 870 255 55 19 chr3 41693927 41694237 -176342921 + L1MC4a LINE L1 5558 5878 -1930 1061 116 74 5 chr3 41694322 41694511 -176342647 - L1MA8 LINE L1 -5 6286 6085 2386 129 6 18 chr3 41695088 41695429 -176341729 - MER1B DNA MER1_type 0 337 1 5919 194 56 38 chr3 41695815 41696411 -176340747 + L1M3 LINE L1 3724 4308 -1872 1119 188 0 0 chr3 41696411 41696576 -176340582 - FAM SINE Alu -10 165 1 5919 194 56 38 chr3 41696576 41697887 -176339271 + L1M3 LINE L1 4308 5655 -525 2247 92 0 7 chr3 41697892 41698176 -176338982 + AluSx SINE Alu 1 282 -30 1772 165 0 0 chr3 41698223 41698490 -176338668 + AluSx SINE Alu 33 299 -13 272 183 135 48 chr3 41698518 41698622 -176338536 - L1ME LINE L1 -394 5727 5615 326 110 61 24 chr3 41698640 41698722 -176338436 + CT-rich Low_complexity Low_complexity 1 85 0 1960 119 0 4 chr3 41698725 41698864 -176338294 - AluSx SINE Alu -44 268 129 216 0 0 0 chr3 41698864 41698888 -176338270 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1960 119 0 4 chr3 41698888 41699017 -176338141 - AluSx SINE Alu -183 129 1 24 0 0 0 chr3 41699185 41699209 -176337949 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr3 41699214 41699250 -176337908 + (TA)n Simple_repeat Simple_repeat 2 37 0 2050 151 0 0 chr3 41699253 41699565 -176337593 - AluSx SINE Alu 0 312 1 14355 213 32 11 chr3 41699565 41699926 -176337232 - L1PB1 LINE L1 -5 7565 7213 389 97 14 0 chr3 41699926 41699998 -176337160 + (TA)n Simple_repeat Simple_repeat 1 73 0 14355 213 32 11 chr3 41699998 41702771 -176334387 - L1PB1 LINE L1 -357 7213 3903 2383 68 7 3 chr3 41702771 41703063 -176334095 - AluY SINE Alu -18 293 1 14355 213 32 11 chr3 41703063 41704648 -176332510 - L1PB1 LINE L1 -3667 3903 2353 4842 176 70 17 chr3 41704657 41705586 -176331572 - L1PB1 LINE L1 -5883 1683 706 3900 177 54 5 chr3 41706119 41706876 -176330282 - L1MB5 LINE L1 -8 6166 5373 1889 280 162 13 chr3 41706924 41707842 -176329316 + L2 LINE L2 57 1111 -2203 2232 94 0 27 chr3 41707889 41708187 -176328971 - AluSx SINE Alu -20 292 3 206 269 19 0 chr3 41708191 41708243 -176328915 - L2 LINE L2 -234 3079 3027 2020 128 20 0 chr3 41708244 41708542 -176328616 - AluSx SINE Alu 0 312 9 453 258 138 66 chr3 41709519 41710103 -176327055 + L2 LINE L2 2630 3268 -45 211 216 0 0 chr3 41710115 41710152 -176327006 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 2379 262 107 35 chr3 41712085 41713531 -176323627 + L2 LINE L2 1784 3312 -1 1674 158 4 4 chr3 41715866 41716126 -176321032 - AluSx SINE Alu -15 297 38 1353 197 120 62 chr3 41716513 41716945 -176320213 + MSTB2 LTR MaLR 1 457 0 23 33 0 0 chr3 41718854 41718884 -176318274 + AT_rich Low_complexity Low_complexity 1 30 0 191 299 90 0 chr3 41718909 41718976 -176318182 - MIR3 SINE MIR -8 200 128 470 196 176 0 chr3 41719181 41719283 -176317875 + FLAM_C SINE Alu 1 120 -23 297 0 0 0 chr3 41719283 41719316 -176317842 + (TAA)n Simple_repeat Simple_repeat 2 34 0 196 210 74 25 chr3 41719498 41719579 -176317579 + L2 LINE L2 2625 2709 -605 351 0 0 0 chr3 41719656 41719673 -176317485 + (CA)n Simple_repeat Simple_repeat 1 56 0 351 0 0 0 chr3 41719673 41719712 -176317446 + (CA)n Simple_repeat Simple_repeat 1 39 0 978 209 91 88 chr3 41720454 41720918 -176316240 + L1MC4 LINE L1 7450 7914 -128 2332 101 39 28 chr3 41720918 41721274 -176315884 + THE1B LTR MaLR 1 360 -4 231 273 0 30 chr3 41721346 41721412 -176315746 + GA-rich Low_complexity Low_complexity 3 66 0 335 200 40 48 chr3 41721412 41721476 -176315682 + L1MC4 LINE L1 7919 7983 -59 2270 95 174 8 chr3 41721476 41721843 -176315315 + MSTA LTR MaLR 1 428 0 335 200 40 48 chr3 41721843 41721903 -176315255 + L1MC4 LINE L1 7983 8042 0 1280 164 81 77 chr3 41722827 41723137 -176314021 + AluJo SINE Alu 1 311 -1 337 234 108 44 chr3 41723601 41723759 -176313399 + MIR SINE MIR 76 243 -19 395 254 119 11 chr3 41724055 41724240 -176312918 - MIR SINE MIR -35 227 23 787 272 52 0 chr3 41724962 41725153 -176312005 + MER58A DNA MER1_type 1 201 -23 1817 174 0 7 chr3 41725168 41725449 -176311709 - AluJo SINE Alu -23 289 11 2281 102 0 13 chr3 41725478 41725791 -176311367 + AluSx SINE Alu 1 309 -3 23 54 0 0 chr3 41725849 41725886 -176311272 + AT_rich Low_complexity Low_complexity 1 37 0 2338 98 20 0 chr3 41726136 41726442 -176310716 - AluSp SINE Alu -1 312 1 1613 225 103 147 chr3 41726708 41728378 -176308780 + L2 LINE L2 812 2407 -907 550 273 126 39 chr3 41728407 41728638 -176308520 + MLT1H LTR MaLR 20 298 -251 219 117 83 50 chr3 41728917 41728977 -176308181 + A-rich Low_complexity Low_complexity 3 64 0 466 279 86 38 chr3 41728985 41729170 -176307988 + L2 LINE L2 2407 2612 -702 2373 86 0 3 chr3 41729170 41729462 -176307696 - AluSg SINE Alu -19 291 1 466 279 86 38 chr3 41729462 41729566 -176307592 + L2 LINE L2 2612 2710 -604 387 236 55 92 chr3 41729771 41730367 -176306791 - L1ME3A LINE L1 -78 6328 5652 929 225 142 52 chr3 41730565 41731696 -176305462 - L1ME3A LINE L1 -1056 5326 4043 388 263 94 91 chr3 41731703 41732590 -176304568 - L1ME3A LINE L1 -2587 3795 2901 2374 98 0 6 chr3 41732590 41732905 -176304253 - AluSq SINE Alu 0 313 1 388 263 94 91 chr3 41732905 41733297 -176303861 - L1ME3A LINE L1 -3481 2901 2512 252 266 59 59 chr3 41733290 41733501 -176303657 - L1MEd LINE L1 -4863 1509 1252 * 596 248 105 0 chr3 41733808 41733964 -176303194 - FRAM SINE Alu 0 170 1 1607 98 18 0 chr3 41734595 41734820 -176302338 - AluSg/x SINE Alu -5 307 79 2402 95 0 0 chr3 41734822 41735118 -176302040 - AluSc SINE Alu -13 296 1 1923 144 38 27 chr3 41735259 41735603 -176301555 + THE1B LTR MaLR 1 428 0 2193 125 7 0 chr3 41736589 41736894 -176300264 - AluSx SINE Alu -5 307 1 2363 97 10 0 chr3 41737814 41738123 -176299035 + AluSx SINE Alu 1 312 0 459 214 205 14 chr3 41738275 41738485 -176298673 - L1MEd LINE L1 -5077 1307 1058 5118 140 98 15 chr3 41738499 41739593 -176297565 - L1MA4A LINE L1 0 7005 5829 1416 184 8 8 chr3 41739694 41739939 -176297219 - AluJb SINE Alu -45 267 23 8926 164 55 88 chr3 41739940 41741201 -176295957 - L1MA4A LINE L1 -1296 5552 4251 620 202 0 0 chr3 41741201 41741310 -176295848 - FLAM_A SINE Alu -10 132 24 233 149 27 135 chr3 41741310 41741384 -176295774 - AluSp SINE Alu -123 180 115 8926 164 55 88 chr3 41741384 41741778 -176295380 - L1MA4A LINE L1 -2596 4252 3847 2179 110 0 0 chr3 41741778 41742070 -176295088 - AluSg SINE Alu -18 292 1 8926 164 55 88 chr3 41742070 41742651 -176294507 - L1MA4A LINE L1 -3001 3847 3212 8120 201 102 14 chr3 41742651 41742871 -176294287 - L1MA4A LINE L1 -3842 3006 2807 2283 104 7 0 chr3 41742871 41743179 -176293979 - AluY SINE Alu -1 310 1 8120 201 102 14 chr3 41743179 41745636 -176291522 - L1MA4A LINE L1 -4041 2807 4 511 191 191 16 chr3 41745679 41745908 -176291250 - L1M3d LINE L1 -4971 1332 777 1830 118 8 0 chr3 41746823 41747086 -176290072 + AluSg SINE Alu 46 310 0 560 268 85 24 chr3 41747159 41747405 -176289753 + L2 LINE L2 1546 1806 -1508 2574 60 7 0 chr3 41747405 41747707 -176289451 - AluSq SINE Alu -9 304 1 330 264 57 9 chr3 41747903 41748009 -176289149 + L1MC5 LINE L1 7317 7427 -534 356 264 28 0 chr3 41748081 41748187 -176288971 - MIR SINE MIR -21 241 133 745 184 145 6 chr3 41748187 41748366 -176288792 - MER82 DNA MER2_type -251 402 199 858 228 66 0 chr3 41748742 41748939 -176288219 - MER82 DNA MER2_type 0 653 444 245 268 78 56 chr3 41748970 41749112 -176288046 + MIR SINE MIR 2 146 -116 340 237 40 0 chr3 41749189 41749265 -176287893 - MER82 DNA MER2_type -574 79 1 870 147 7 7 chr3 41749384 41749527 -176287631 - MER82 DNA MER2_type -510 143 1 5086 66 31 1 chr3 41749657 41750305 -176286853 - PABL_B LTR ERV1 0 667 1 286 233 27 0 chr3 41750332 41750405 -176286753 - MIR SINE MIR -10 252 178 631 265 39 11 chr3 41750441 41750622 -176286536 - MIR SINE MIR -7 255 70 2393 85 3 0 chr3 41750790 41751084 -176286074 - AluSp SINE Alu -18 295 1 242 248 51 0 chr3 41751961 41752098 -176285060 + (TATAA)n Simple_repeat Simple_repeat 1 144 0 2419 89 0 6 chr3 41752113 41752428 -176284730 - AluSp SINE Alu 0 313 1 783 189 90 56 chr3 41754444 41754677 -176282481 - L1ME3 LINE L1 -43 6119 5879 734 234 52 5 chr3 41754702 41754894 -176282264 - L1ME3 LINE L1 -349 5813 5613 2478 88 0 0 chr3 41755563 41755870 -176281288 - AluSx SINE Alu -5 307 1 1049 160 128 0 chr3 41756544 41756731 -176280427 - MER46A DNA MER2_type 0 236 26 23 105 0 0 chr3 41756915 41757001 -176280157 + AT_rich Low_complexity Low_complexity 1 86 0 1676 164 4 4 chr3 41757649 41757930 -176279228 + AluSx SINE Alu 31 311 -1 852 295 80 23 chr3 41757931 41758513 -176278645 + L2 LINE L2 2707 3312 -1 293 257 100 43 chr3 41758621 41758761 -176278397 + L2 LINE L2 2673 2820 -494 1039 214 0 0 chr3 41758984 41759162 -176277996 - MER45A DNA AcHobo 0 178 1 527 148 87 17 chr3 41760015 41760130 -176277028 + MER112 DNA MER1_type 132 254 -6 864 141 0 49 chr3 41767578 41767720 -176269438 - AluJo SINE Alu -177 135 1 225 240 0 40 chr3 41769055 41769130 -176268028 + A-rich Low_complexity Low_complexity 2 73 0 217 194 65 81 chr3 41769297 41769359 -176267799 - L2 LINE L2 -26 3246 3186 315 344 8 15 chr3 41769653 41769784 -176267374 + MIR SINE MIR 119 248 -14 275 371 0 0 chr3 41770752 41770884 -176266274 + MER117 DNA MER1_type 39 170 -27 262 243 94 87 chr3 41771006 41771294 -176265864 + L1MC3 LINE L1 5815 6104 -1681 * 1218 190 78 18 chr3 41771086 41771370 -176265788 + L1MB7 LINE L1 5884 6184 0 536 291 13 7 chr3 41771629 41771780 -176265378 + L2 LINE L2 2169 2320 -994 2017 216 65 17 chr3 41771783 41772245 -176264913 + MLT1D LTR MaLR 4 487 -18 1481 260 139 33 chr3 41772259 41772859 -176264299 + L2 LINE L2 2320 2855 -458 187 53 26 26 chr3 41772859 41772897 -176264261 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2047 129 0 0 chr3 41772899 41773179 -176263979 - AluSx SINE Alu -32 280 1 1481 260 139 33 chr3 41773179 41773434 -176263724 + L2 LINE L2 2855 3274 -39 299 57 0 0 chr3 41774423 41774458 -176262700 + MER4E LTR ERV1 655 689 -77 198 0 0 0 chr3 41774458 41774480 -176262678 + (A)n Simple_repeat Simple_repeat 1 22 0 812 204 149 0 chr3 41774633 41774814 -176262344 - MER3 DNA MER1_type -1 208 1 528 193 34 0 chr3 41775548 41775667 -176261491 + MER5A DNA MER1_type 16 138 -51 268 246 14 0 chr3 41775890 41775959 -176261199 - L1ME2 LINE L1 -13 6151 6082 689 183 38 0 chr3 41775987 41776118 -176261040 - L1MB2 LINE L1 -54 6117 5982 195 244 0 0 chr3 41776121 41776162 -176260996 + MER5A DNA MER1_type 143 183 -6 220 121 0 0 chr3 41776836 41776869 -176260289 - MIR SINE MIR -11 251 219 2279 122 0 0 chr3 41777782 41778093 -176259065 - AluY SINE Alu 0 311 1 817 269 67 97 chr3 41779007 41779722 -176257436 + L1MC4a LINE L1 5266 5959 -1849 23 0 0 0 chr3 41779722 41779745 -176257413 + AT_rich Low_complexity Low_complexity 1 23 0 2138 138 117 69 chr3 41780256 41780281 -176256877 + MLT1D LTR MaLR 5 27 -478 1953 122 62 3 chr3 41780281 41780569 -176256589 + AluSx SINE Alu 1 305 -7 2138 138 117 69 chr3 41780569 41781020 -176256138 + MLT1D LTR MaLR 27 504 -1 217 315 9 46 chr3 41781452 41781560 -176255598 - MIR SINE MIR -10 252 149 25 83 0 0 chr3 41782525 41782585 -176254573 + AT_rich Low_complexity Low_complexity 1 60 0 288 0 0 0 chr3 41783204 41783236 -176253922 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr3 41783274 41783303 -176253855 + AT_rich Low_complexity Low_complexity 1 29 0 191 255 85 0 chr3 41784827 41784874 -176252284 + L2 LINE L2 3262 3312 -1 181 333 48 16 chr3 41785506 41785632 -176251526 - L2 LINE L2 -3 3310 3181 647 301 143 49 chr3 41785706 41785967 -176251191 + MLT1L LTR MaLR 1 236 -379 2222 110 3 7 chr3 41785967 41786277 -176250881 - AluSc SINE Alu 0 309 1 647 301 143 49 chr3 41786277 41786495 -176250663 + MLT1L LTR MaLR 236 432 -183 234 0 0 0 chr3 41786495 41786521 -176250637 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1507 193 44 4 chr3 41786524 41786794 -176250364 - AluJb SINE Alu -29 283 3 647 301 143 49 chr3 41786794 41786863 -176250295 + MLT1L LTR MaLR 433 606 -9 1124 156 138 45 chr3 41788173 41788462 -176248696 + L1ME1 LINE L1 5739 6054 -112 1351 145 18 23 chr3 41788462 41788683 -176248475 - MER46A DNA MER2_type 0 236 17 356 183 26 0 chr3 41788738 41788824 -176248334 + L1ME1 LINE L1 6089 6184 0 269 227 28 14 chr3 41788975 41789079 -176248079 - LTR33A LTR ERVL -25 498 425 2138 112 3 14 chr3 41789088 41789382 -176247776 - AluSg SINE Alu -19 291 1 2147 99 16 35 chr3 41789725 41790039 -176247119 + AluSc SINE Alu 1 308 -1 2375 95 0 0 chr3 41791145 41791451 -176245707 - AluSg SINE Alu -4 306 1 842 168 8 0 chr3 41791477 41791608 -176245550 + FRAM SINE Alu 1 129 -47 973 204 114 29 chr3 41792012 41792320 -176244838 - L1M4 LINE L1 -1112 5270 4937 302 147 0 59 chr3 41792377 41792445 -176244713 + L1ME3 LINE L1 5220 5283 -863 259 254 153 34 chr3 41792540 41792717 -176244441 + L1ME3 LINE L1 5498 5695 -475 242 256 76 87 chr3 41792894 41793066 -176244092 + L1ME3 LINE L1 5965 6134 -28 22 0 0 0 chr3 41795434 41795456 -176241702 + AT_rich Low_complexity Low_complexity 1 22 0 338 222 0 0 chr3 41795461 41795524 -176241634 - MER5A DNA MER1_type -83 106 44 847 214 34 6 chr3 41795557 41795735 -176241423 - MER5A DNA MER1_type 0 189 7 1078 149 47 28 chr3 41795926 41796140 -176241018 + L1MA2 LINE L1 6087 6304 0 1074 207 55 12 chr3 41797604 41797860 -176239298 + L1MC4 LINE L1 7765 8031 -11 388 274 77 0 chr3 41798012 41798129 -176239029 + MIR SINE MIR 46 171 -91 2197 92 3 3 chr3 41798780 41799064 -176238094 + AluSp SINE Alu 15 298 -15 1124 43 0 7 chr3 41799065 41799205 -176237953 + L1PA4 LINE L1 5865 6003 -152 3295 225 113 21 chr3 41801166 41802469 -176234689 - L1M4 LINE L1 -2406 3976 2325 1998 147 7 3 chr3 41802469 41802768 -176234390 + AluSx SINE Alu 1 300 -12 3295 225 113 21 chr3 41802768 41802987 -176234171 - L1M4 LINE L1 -4057 2325 2128 1984 175 34 102 chr3 41802991 41803529 -176233629 - L1M4 LINE L1 -4559 1825 1325 1466 167 69 4 chr3 41803682 41803957 -176233201 + AluSx SINE Alu 1 293 -19 201 39 0 0 chr3 41804112 41804138 -176233020 + (A)n Simple_repeat Simple_repeat 1 26 0 948 161 0 0 chr3 41805385 41805528 -176231630 + AluSg/x SINE Alu 130 272 -38 726 106 120 148 chr3 41805544 41805692 -176231466 - Tigger2 DNA MER2_type -2507 211 69 2104 108 3 0 chr3 41805692 41805979 -176231179 - AluSx SINE Alu -24 288 1 726 106 120 148 chr3 41805979 41806047 -176231111 - Tigger2 DNA MER2_type -2649 69 1 667 134 17 17 chr3 41806239 41806358 -176230800 + L1MB2 LINE L1 6042 6160 -11 554 172 6 0 chr3 42006519 42006626 -176030532 + L1M4 LINE L1 2357 2506 -3941 229 204 0 0 chr3 42006800 42006844 -176030314 + AluJ/monomer SINE Alu 1 44 -256 262 308 47 35 chr3 42006981 42007150 -176030008 + MARNA DNA Mariner 254 424 -162 875 167 0 0 chr3 42007306 42007438 -176029720 + FLAM_C SINE Alu 1 132 -1 668 276 83 48 chr3 42008147 42008509 -176028649 - HAL1 LINE L1 -359 2148 1800 1906 139 41 3 chr3 42008509 42008803 -176028355 - AluSx SINE Alu -7 305 1 668 276 83 48 chr3 42008803 42008891 -176028267 - HAL1 LINE L1 -707 1800 1677 1734 187 17 0 chr3 42008891 42009190 -176027968 + AluJb SINE Alu 1 304 -8 668 276 83 48 chr3 42009190 42009220 -176027938 - HAL1 LINE L1 -830 1677 1650 1886 223 94 22 chr3 42009233 42009816 -176027342 + L1M4 LINE L1 2890 3514 -2868 270 211 39 0 chr3 42009816 42009868 -176027290 + AluSg/x SINE Alu 117 170 -132 1379 193 64 24 chr3 42009870 42010166 -176026992 + AluJo SINE Alu 3 310 -2 2242 115 7 0 chr3 42010331 42010636 -176026522 + AluY SINE Alu 1 307 -4 2203 197 33 42 chr3 42010725 42010850 -176026308 + L1M4 LINE L1 3616 3741 -2641 1927 154 43 0 chr3 42010850 42011149 -176026009 + AluJb SINE Alu 1 312 0 2203 197 33 42 chr3 42011149 42011439 -176025719 + L1M4 LINE L1 3741 4027 -2355 2069 146 27 43 chr3 42011439 42011809 -176025349 - THE1B LTR MaLR 0 364 1 2203 197 33 42 chr3 42011809 42011936 -176025222 + L1M4 LINE L1 4027 4154 -2228 524 224 61 14 chr3 42011935 42012082 -176025076 + L1M4 LINE L1 5265 5418 -964 * 303 226 48 0 chr3 42012226 42012310 -176024848 + HAL1 LINE L1 2237 2324 -183 1856 143 56 0 chr3 42013007 42013293 -176023865 - AluSx SINE Alu -10 302 1 253 213 53 27 chr3 42013384 42013459 -176023699 - L1ME LINE L1 -311 5810 5734 200 211 0 0 chr3 42014739 42014777 -176022381 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 226 189 38 0 chr3 42015257 42015310 -176021848 + MER116 DNA Mariner 26 80 0 2104 133 0 0 chr3 42015545 42015839 -176021319 - AluSx SINE Alu -18 294 1 214 223 25 50 chr3 42016225 42016346 -176020812 + (TTATA)n Simple_repeat Simple_repeat 2 119 0 30 43 0 43 chr3 42016400 42016470 -176020688 + AT_rich Low_complexity Low_complexity 1 67 0 235 191 48 12 chr3 42016558 42016642 -176020516 + (TA)n Simple_repeat Simple_repeat 1 87 0 2030 126 0 0 chr3 42016749 42017026 -176020132 - AluSx SINE Alu -35 277 1 686 86 86 9 chr3 42017069 42017185 -176019973 - L1MA8 LINE L1 -52 6239 6115 1208 206 54 7 chr3 42017204 42017480 -176019678 - L1MA9 LINE L1 -35 6277 5989 498 16 0 16 chr3 42017477 42017539 -176019619 - L1MA8 LINE L1 -160 6131 6071 * 5294 112 23 0 chr3 42017934 42018836 -176018322 + L1PA12 LINE L1 5117 6033 -135 2211 116 7 0 chr3 42019660 42019963 -176017195 + AluSx SINE Alu 1 305 -7 346 325 34 10 chr3 42020424 42020573 -176016585 - MER20B DNA MER1_type 0 219 63 603 207 27 9 chr3 42021274 42021385 -176015773 - FRAM SINE Alu -66 110 1 21 57 0 0 chr3 42021458 42021493 -176015665 + AT_rich Low_complexity Low_complexity 1 35 0 1349 190 63 114 chr3 42021670 42022160 -176014998 + MER4C LTR ERV1 1 465 0 1798 139 4 0 chr3 42022483 42022787 -176014371 + AluSx SINE Alu 26 330 0 467 163 0 23 chr3 42022787 42022873 -176014285 + L1M1 LINE L1 2844 2927 -4638 6452 91 24 79 chr3 42022878 42024282 -176012876 - SVA Other Other -555 1386 431 300 317 119 20 chr3 42024757 42024959 -176012199 - MER57A LTR ERV1 -175 228 7 1624 167 21 14 chr3 42025016 42025298 -176011860 - AluSx SINE Alu -28 284 1 2478 69 0 0 chr3 42025302 42025605 -176011553 - AluY SINE Alu -8 303 1 253 119 0 0 chr3 42025618 42025660 -176011498 - MER65B LTR ERV1 -487 44 3 2435 224 55 24 chr3 42025662 42026278 -176010880 - MER65B-int LTR ERV1 0 4871 4237 415 178 10 59 chr3 42026278 42026379 -176010779 - MER65B-int LTR ERV1 -739 4132 4037 21 0 0 0 chr3 42026666 42026687 -176010471 + GC_rich Low_complexity Low_complexity 1 21 0 282 191 170 11 chr3 42027452 42027546 -176009612 + MER103 DNA DNA 57 165 -1 1031 184 237 15 chr3 42029147 42029392 -176007766 + L1MEc LINE L1 1841 2030 -4366 2119 137 0 9 chr3 42029392 42029707 -176007451 + AluSx SINE Alu 1 312 0 1031 184 237 15 chr3 42029707 42029858 -176007300 + L1MEc LINE L1 2030 2325 -4071 2211 120 0 0 chr3 42029858 42030158 -176007000 + AluSg SINE Alu 1 300 -10 1236 171 5 5 chr3 42030713 42030923 -176006235 - AluJb SINE Alu -20 292 83 2844 74 3 14 chr3 42031142 42031506 -176005652 - L1PB1 LINE L1 0 6151 5792 913 100 0 105 chr3 42031560 42031789 -176005369 - L1PB1 LINE L1 -359 5792 5588 269 208 13 39 chr3 42032084 42032161 -176004997 + CT-rich Low_complexity Low_complexity 3 77 0 604 324 66 0 chr3 42032662 42032875 -176004283 - MIR SINE MIR -14 248 22 1025 254 35 23 chr3 42032936 42033283 -176003875 + L1ME4a LINE L1 5519 5869 -252 945 182 20 15 chr3 42033692 42033890 -176003268 + L1MB8 LINE L1 5980 6178 0 226 369 70 25 chr3 42034112 42034269 -176002889 + L2 LINE L2 3107 3270 -2 2764 236 38 31 chr3 42034400 42035327 -176001831 + L1M4 LINE L1 2574 3506 -2640 374 268 62 0 chr3 42035330 42035442 -176001716 + AluSq/x SINE Alu 1 119 -184 5130 148 14 124 chr3 42035625 42036180 -176000978 + L1M2 LINE L1 1037 1464 -5385 624 118 0 0 chr3 42036180 42036265 -176000893 + AluY SINE Alu 213 297 -14 5130 148 14 124 chr3 42036265 42036910 -176000248 + L1M2 LINE L1 1464 2179 -4670 1407 176 60 89 chr3 42037044 42037338 -175999820 + MER58B DNA MER1_type 5 289 -2131 860 214 7 0 chr3 42037338 42037492 -175999666 - FRAM SINE Alu -11 155 1 1407 176 60 89 chr3 42037492 42037544 -175999614 + MER58B DNA MER1_type 289 341 0 211 384 29 43 chr3 42037559 42037697 -175999461 - MIR3 SINE MIR -72 136 1 569 288 47 41 chr3 42038932 42039276 -175997882 - L1M4 LINE L1 -2190 3956 3611 1205 272 91 35 chr3 42039288 42039748 -175997410 - MLT1J LTR MaLR -22 489 4 249 179 90 51 chr3 42039774 42039852 -175997306 - MIR SINE MIR -153 109 29 1076 196 10 5 chr3 42040358 42040557 -175996601 + AluJo SINE Alu 89 288 -24 701 172 75 0 chr3 42040681 42040815 -175996343 - MER5A DNA MER1_type -44 145 2 206 354 6 31 chr3 42041170 42041331 -175995827 + CT-rich Low_complexity Low_complexity 3 159 0 191 288 144 30 chr3 42041596 42041728 -175995430 + L2 LINE L2 3165 3311 -2 810 240 15 10 chr3 42042233 42042429 -175994729 + MIR SINE MIR 60 256 -6 304 77 39 0 chr3 42042900 42042952 -175994206 + CT-rich Low_complexity Low_complexity 4 57 0 1654 192 3 19 chr3 42042954 42043271 -175993887 - AluJb SINE Alu 0 312 1 240 388 0 0 chr3 42043271 42043351 -175993807 + L2 LINE L2 2590 2669 -645 391 237 82 0 chr3 42043376 42043473 -175993685 + MIR SINE MIR 13 117 -145 234 311 107 51 chr3 42043561 42043738 -175993420 + L2 LINE L2 2842 3028 -244 264 314 48 24 chr3 42043771 42043895 -175993263 - MER91A DNA MER1_type -25 171 45 195 42 0 0 chr3 42045012 42045036 -175992122 + (CTCA)n Simple_repeat Simple_repeat 4 27 0 969 156 17 22 chr3 42046072 42046251 -175990907 - AluSg/x SINE Alu -14 298 121 239 229 7 91 chr3 42046251 42046454 -175990704 - AluJb SINE Alu -83 219 121 24 0 0 0 chr3 42046569 42046593 -175990565 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 42047565 42047593 -175989565 + AT_rich Low_complexity Low_complexity 1 28 0 1201 90 6 6 chr3 42047909 42048065 -175989093 + L1PA12 LINE L1 5995 6150 -18 1907 95 0 0 chr3 42048092 42048344 -175988814 - L1P4 LINE L1 -362 5812 5561 1889 134 4 4 chr3 42048347 42048622 -175988536 + AluSx SINE Alu 17 291 -21 506 335 86 34 chr3 42049157 42049482 -175987676 + L2 LINE L2 2475 2816 -498 407 282 129 18 chr3 42049486 42049656 -175987502 - MIR SINE MIR -67 195 7 443 306 48 121 chr3 42049662 42050116 -175987042 + L2 LINE L2 2851 3271 -1 365 219 113 42 chr3 42051890 42052040 -175985118 - MIR SINE MIR -60 202 44 698 198 24 8 chr3 42053770 42053896 -175983262 + MER2 DNA MER2_type 218 345 0 343 248 120 0 chr3 42053896 42054013 -175983145 - L1ME4a LINE L1 -24 6097 5967 748 118 92 33 chr3 42054040 42054192 -175982966 + L1PA5 LINE L1 5994 6154 0 218 250 18 18 chr3 42054646 42054702 -175982456 + L3 LINE CR1 1520 1575 -2 4771 124 12 12 chr3 42055055 42055794 -175981364 - L1MA3 LINE L1 -284 6021 5283 289 232 49 0 chr3 42056765 42056847 -175980311 + MLT1K LTR MaLR 148 233 -355 263 295 248 0 chr3 42056910 42057015 -175980143 - L2 LINE L2 0 3272 3142 556 178 28 9 chr3 42057617 42057724 -175979434 + AluSg/x SINE Alu 164 272 -40 281 24 49 0 chr3 42057735 42057776 -175979382 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 863 209 14 33 chr3 42058675 42058890 -175978268 + L1MA5A LINE L1 4791 5001 -1145 3112 113 10 48 chr3 42058897 42058976 -175978182 - L1PA16 LINE L1 -162 6004 5924 1943 106 85 21 chr3 42058976 42059258 -175977900 - AluSx SINE Alu -8 304 5 3112 113 10 48 chr3 42059258 42059682 -175977476 - L1PA16 LINE L1 -242 5924 5520 5068 120 12 25 chr3 42059682 42060457 -175976701 + L1MA5A LINE L1 5519 6283 -14 929 179 4 16 chr3 42060457 42060686 -175976472 - AluJb SINE Alu -17 295 3 606 164 46 59 chr3 42060723 42060875 -175976283 - MER65A-int LTR ERV1 -3225 3373 3224 * 4090 190 108 46 chr3 42060863 42061367 -175975791 - MER65A-int LTR ERV1 -3544 1327 855 2133 140 0 10 chr3 42061367 42061667 -175975491 + AluSq SINE Alu 3 301 -12 273 29 0 0 chr3 42061667 42061701 -175975457 + (TA)n Simple_repeat Simple_repeat 2 35 0 2133 140 0 10 chr3 42061701 42061714 -175975444 + AluSq SINE Alu 301 313 0 4090 190 108 46 chr3 42061714 42062352 -175974806 - MER65A-int LTR ERV1 -4016 855 115 2407 123 90 43 chr3 42062440 42062576 -175974582 - MER65A LTR ERV1 -2 443 315 2039 116 3 53 chr3 42062576 42062895 -175974263 - AluSx SINE Alu -9 303 1 2407 123 90 43 chr3 42062895 42063181 -175973977 - MER65A LTR ERV1 -130 315 1 411 134 62 103 chr3 42063182 42063279 -175973879 - L1MB7 LINE L1 -273 5911 5819 3217 70 6 70 chr3 42063279 42063752 -175973406 - L1PA6 LINE L1 -5 6149 5707 755 165 12 75 chr3 42063785 42063902 -175973256 - L1MB7 LINE L1 -447 5715 5618 2149 88 0 59 chr3 42063902 42064207 -175972951 - AluSc SINE Alu -22 287 1 755 165 12 75 chr3 42064207 42064269 -175972889 - L1MB7 LINE L1 -544 5618 5554 1515 193 115 46 chr3 42064377 42064750 -175972408 - MLT1D LTR MaLR -106 399 1 598 315 45 25 chr3 42064750 42064858 -175972300 + L2 LINE L2 2998 3102 -211 2471 78 0 7 chr3 42064858 42065167 -175971991 + AluSq SINE Alu 1 307 -6 598 315 45 25 chr3 42065167 42065344 -175971814 + L2 LINE L2 3102 3289 -24 413 285 73 55 chr3 42065706 42065871 -175971287 - MER5A DNA MER1_type -1 188 21 2524 106 39 28 chr3 42066216 42066576 -175970582 - THE1B LTR MaLR 0 364 1 2467 85 0 0 chr3 42067023 42067328 -175969830 - AluSx SINE Alu -7 305 1 1997 136 0 19 chr3 42067331 42067641 -175969517 - AluSx SINE Alu -8 304 1 453 262 286 16 chr3 42067641 42068015 -175969143 - HAL1 LINE L1 -225 2282 1808 527 299 50 70 chr3 42068486 42068727 -175968431 + MIR SINE MIR 1 236 -26 2349 70 31 0 chr3 42068844 42069131 -175968027 - AluSx SINE Alu -12 300 5 270 333 11 0 chr3 42069180 42069267 -175967891 - L2 LINE L2 -4 3309 3222 2584 156 8 34 chr3 42069287 42069598 -175967560 + L1MB2 LINE L1 5707 6003 -168 2284 108 0 0 chr3 42069598 42069895 -175967263 - AluSg SINE Alu -13 297 1 2584 156 8 34 chr3 42069895 42070059 -175967099 + L1MB2 LINE L1 6003 6170 -1 384 336 123 5 chr3 42070225 42070436 -175966722 - MIR SINE MIR -23 239 4 853 113 49 21 chr3 42070901 42071043 -175966115 - FRAM SINE Alu -11 165 20 1985 148 0 3 chr3 42071050 42071347 -175965811 - AluSx SINE Alu -16 296 1 1014 175 27 0 chr3 42071444 42071627 -175965531 - L1MB3 LINE L1 -34 6149 5962 617 144 0 0 chr3 42071627 42071717 -175965441 - 5S rRNA rRNA -31 90 1 368 187 0 13 chr3 42071717 42071792 -175965366 - L1MB3 LINE L1 -197 5974 5901 1342 182 10 76 chr3 42072172 42072474 -175964684 + AluJo SINE Alu 1 282 -30 1316 206 0 0 chr3 42072561 42072780 -175964378 - MER20 DNA MER1_type 0 219 1 191 261 65 0 chr3 42073211 42073257 -175963901 + L2 LINE L2 3223 3271 -1 875 162 0 22 chr3 42073661 42073797 -175963361 - FLAM_A SINE Alu 0 133 1 2184 107 21 0 chr3 42074541 42074831 -175962327 + AluSx SINE Alu 1 296 -16 1538 237 79 8 chr3 42074840 42075195 -175961963 - MER61C-int LTR ERV1 -887 3984 3605 357 200 371 16 chr3 42075183 42075343 -175961815 - MER61C-int LTR ERV1 -847 4089 3363 * 2786 200 66 113 chr3 42075344 42075452 -175961706 - MER61C-int LTR ERV1 -1114 4022 3911 1805 152 0 42 chr3 42075452 42075762 -175961396 + AluJb SINE Alu 3 299 -13 2786 200 66 113 chr3 42075762 42075832 -175961326 - MER61C-int LTR ERV1 -1225 3911 3839 2136 140 0 0 chr3 42075832 42076139 -175961019 + AluSx SINE Alu 1 307 -5 2786 200 66 113 chr3 42076139 42076233 -175960925 - MER61C-int LTR ERV1 -1297 3839 3742 1629 190 0 31 chr3 42076233 42076554 -175960604 + AluJo SINE Alu 1 311 -1 2786 200 66 113 chr3 42076554 42077811 -175959347 - MER61C-int LTR ERV1 -1394 3742 2492 774 157 25 69 chr3 42077889 42078093 -175959065 - MER61C-int LTR ERV1 -2868 3730 3536 262 184 0 0 chr3 42078168 42078217 -175958941 - MER61C-int LTR ERV1 -4281 2477 2429 2328 87 7 0 chr3 42078442 42078741 -175958417 + AluSg SINE Alu 1 301 -9 2432 64 3 13 chr3 42078741 42079053 -175958105 + AluY SINE Alu 1 309 -2 1858 144 3 10 chr3 42079117 42079408 -175957750 + AluSg SINE Alu 5 293 -17 998 162 0 115 chr3 42079447 42079508 -175957650 + AluJo SINE Alu 87 153 -159 2262 107 0 10 chr3 42079508 42079818 -175957340 + AluSg1 SINE Alu 1 307 -2 998 162 0 115 chr3 42079818 42079991 -175957167 + AluJo SINE Alu 153 294 -18 618 108 25 33 chr3 42079991 42080111 -175957047 + L1 LINE L1 4538 4656 -1490 2252 114 0 0 chr3 42080111 42080409 -175956749 + AluSc SINE Alu 1 298 -11 1012 202 5 28 chr3 42080410 42080628 -175956530 + L1 LINE L1 4789 5001 -1145 383 203 0 0 chr3 42080635 42080704 -175956454 - L1PA16 LINE L1 -162 6004 5936 307 278 156 0 chr3 42081137 42081227 -175955931 - L2 LINE L2 -2 3311 3208 571 330 112 4 chr3 42081422 42081655 -175955503 - L2 LINE L2 -225 3088 2831 2370 64 3 7 chr3 42081667 42081962 -175955196 - AluY SINE Alu -17 294 1 866 246 138 40 chr3 42081992 42082370 -175954788 - MER50 LTR ERV1 -298 436 22 2035 183 57 5 chr3 42082376 42082759 -175954399 - MER61C LTR ERV1 0 434 32 11293 173 53 46 chr3 42082760 42083865 -175953293 - MER61C-int LTR ERV1 -917 5029 3933 2226 113 13 0 chr3 42083865 42084166 -175952992 - AluSg SINE Alu -5 305 1 2193 123 0 0 chr3 42084171 42084472 -175952686 - AluSx SINE Alu -9 303 3 11293 173 53 46 chr3 42084472 42085496 -175951662 - MER61C-int LTR ERV1 -2016 3930 2915 2400 53 0 7 chr3 42085496 42085810 -175951348 - AluY SINE Alu 0 312 1 11293 173 53 46 chr3 42085810 42085822 -175951336 - MER61C-int LTR ERV1 -3031 2915 2905 2369 103 0 3 chr3 42085822 42086134 -175951024 - AluY SINE Alu 0 311 1 11293 173 53 46 chr3 42086134 42086169 -175950989 - MER61C-int LTR ERV1 -3041 2905 2872 2262 129 0 0 chr3 42086169 42086479 -175950679 - AluSq SINE Alu -3 310 1 11293 173 53 46 chr3 42086479 42087000 -175950158 - MER61C-int LTR ERV1 -3074 2872 1407 2800 110 15 7 chr3 42087013 42087423 -175949735 + MER4E LTR ERV1 1 413 -366 1869 127 6 62 chr3 42087431 42087555 -175949603 - AluSq SINE Alu -7 306 177 1368 153 103 121 chr3 42087555 42088011 -175949147 - LTR7 LTR ERV1 -2 448 1 1869 127 6 62 chr3 42088011 42088210 -175948948 - AluSq SINE Alu -136 177 1 2199 92 3 10 chr3 42088252 42088547 -175948611 - AluSx SINE Alu -8 304 12 2471 95 9 3 chr3 42088547 42088885 -175948273 + MER4E LTR ERV1 427 766 0 2222 152 0 0 chr3 42088896 42089232 -175947926 - MER61C-int LTR ERV1 -4984 2553 2218 * 4810 165 31 32 chr3 42089209 42090476 -175946682 - MER61C-int LTR ERV1 -382 4835 3567 425 197 0 0 chr3 42090476 42090552 -175946606 - MADE1 DNA Mariner 0 80 5 4810 165 31 32 chr3 42090552 42090689 -175946469 - MER61C-int LTR ERV1 -1650 3567 3431 1992 154 0 10 chr3 42090689 42090982 -175946176 - AluSx SINE Alu -22 290 1 4810 165 31 32 chr3 42090982 42091148 -175946010 - MER61C-int LTR ERV1 -1786 3431 183 288 232 134 0 chr3 42091183 42091265 -175945893 - MER61C-int LTR ERV1 -6593 498 406 * 508 257 16 21 chr3 42091257 42091417 -175945741 - MER61C-int LTR ERV1 -6837 254 18 2187 163 24 29 chr3 42091433 42091562 -175945596 - MER61C LTR ERV1 0 434 306 2170 107 7 0 chr3 42091562 42091852 -175945306 + AluSp SINE Alu 1 292 -21 2187 163 24 29 chr3 42091852 42092174 -175944984 - MER61C LTR ERV1 -128 306 1 1827 203 65 3 chr3 42092188 42092557 -175944601 + LTR39 LTR ERV1 392 783 0 1471 247 14 3 chr3 42092561 42092857 -175944301 - MER57A-int LTR ERV1 -7238 299 1 2050 196 66 0 chr3 42092857 42093235 -175943923 - MER57A LTR ERV1 0 403 1 2051 101 3 14 chr3 42093251 42093573 -175943585 - AluSx SINE Alu 0 319 1 272 293 111 95 chr3 42093588 42093867 -175943291 + HAL1 LINE L1 1275 1548 -959 2113 134 7 3 chr3 42093867 42094172 -175942986 - AluSx SINE Alu -6 306 1 1655 177 10 33 chr3 42094179 42094478 -175942680 - AluJo SINE Alu -20 292 1 272 293 111 95 chr3 42094478 42094579 -175942579 + HAL1 LINE L1 1553 1669 -838 381 213 75 44 chr3 42094877 42095101 -175942057 - L1MB7 LINE L1 -16 6168 5909 980 74 40 124 chr3 42095101 42095244 -175941914 - MER65A LTR ERV1 0 445 322 2302 83 3 0 chr3 42095244 42095534 -175941624 + AluSq SINE Alu 2 292 -21 980 74 40 124 chr3 42095534 42095592 -175941566 - MER65A LTR ERV1 -123 322 261 1420 241 164 25 chr3 42095750 42096618 -175940540 + L2 LINE L2 2247 3298 -15 215 262 49 0 chr3 42096622 42096683 -175940475 + MIR SINE MIR 195 258 -4 316 286 44 24 chr3 42097961 42098098 -175939060 + MIR SINE MIR 30 167 -62 1499 175 20 44 chr3 42098174 42098471 -175938687 - AluJo SINE Alu -22 290 1 2116 106 10 14 chr3 42098736 42099028 -175938130 + AluSx SINE Alu 1 291 -21 235 283 62 18 chr3 42099038 42099151 -175938007 - L1ME LINE L1 -457 5664 5547 31 44 0 0 chr3 42099241 42099286 -175937872 + AT_rich Low_complexity Low_complexity 1 45 0 523 237 37 7 chr3 42099764 42099899 -175937259 - L1MC4 LINE L1 -139 7903 7765 731 239 12 12 chr3 42099901 42100068 -175937090 + FAM SINE Alu 1 48 -1 330 202 48 29 chr3 42100086 42100190 -175936968 - L1MC4 LINE L1 -243 7799 7694 5014 158 20 24 chr3 42100196 42100948 -175936210 - L1MB3 LINE L1 0 6183 5437 2281 113 3 0 chr3 42100948 42101257 -175935901 - AluSp SINE Alu -3 310 1 5014 158 20 24 chr3 42101257 42101590 -175935568 - L1MB3 LINE L1 -746 5437 5104 1820 183 23 13 chr3 42101590 42101984 -175935174 - L1MB3 LINE L1 -1323 4823 4426 3096 163 49 33 chr3 42101994 42102252 -175934906 + Tigger3b DNA MER2_type 1 253 -2775 1540 207 18 4 chr3 42102252 42102559 -175934599 - AluJo SINE Alu 0 311 1 3096 163 49 33 chr3 42102559 42102739 -175934419 + Tigger3b DNA MER2_type 253 429 -2599 2767 22 10 0 chr3 42102739 42103051 -175934107 - AluYb8 SINE Alu -3 315 1 3096 163 49 33 chr3 42103051 42103218 -175933940 + Tigger3b DNA MER2_type 429 618 -613 11849 176 11 44 chr3 42103227 42103961 -175933197 - L1P LINE L1 -1303 4843 4086 2179 139 0 0 chr3 42103961 42104271 -175932887 - AluSx SINE Alu -2 310 1 11849 176 11 44 chr3 42104271 42104756 -175932402 - L1P LINE L1 -2060 4086 3587 1983 119 7 17 chr3 42104756 42105050 -175932108 - AluSx SINE Alu 0 312 22 11849 176 11 44 chr3 42105050 42106354 -175930804 - L1P LINE L1 -2559 3587 2402 243 0 0 0 chr3 42106598 42106625 -175930533 + (A)n Simple_repeat Simple_repeat 1 27 0 2762 216 28 94 chr3 42106666 42106863 -175930295 + MER57A-int LTR ERV1 6127 6335 -1202 2102 130 0 3 chr3 42106863 42107155 -175930003 + AluSc SINE Alu 1 291 -18 2762 216 28 94 chr3 42107155 42107374 -175929784 + MER57A-int LTR ERV1 6335 6567 -970 1984 116 12 50 chr3 42107374 42107694 -175929464 + AluSg SINE Alu 1 308 -2 2762 216 28 94 chr3 42107694 42107706 -175929452 + MER57A-int LTR ERV1 6567 6578 -959 2310 86 0 23 chr3 42107706 42108008 -175929150 + AluSq SINE Alu 1 295 -18 2421 87 0 3 chr3 42108008 42108320 -175928838 + AluY SINE Alu 1 311 0 2762 216 28 94 chr3 42108320 42108781 -175928377 + MER57A-int LTR ERV1 6576 6960 -577 1012 181 17 73 chr3 42108794 42109026 -175928132 + MER57A-int LTR ERV1 7318 7536 -1 2145 146 92 5 chr3 42109028 42109399 -175927759 + MER57A LTR ERV1 1 403 0 1480 160 20 50 chr3 42109463 42109632 -175927526 - AluJo SINE Alu -21 291 133 2340 87 0 0 chr3 42109632 42109921 -175927237 + AluY SINE Alu 1 289 -22 1480 160 20 50 chr3 42109921 42110051 -175927107 - AluJo SINE Alu -179 133 1 1536 182 9 46 chr3 42110096 42110420 -175926738 - AluJo SINE Alu 0 312 1 221 302 17 60 chr3 42110756 42110872 -175926286 + MIR SINE MIR 36 146 -62 1354 98 31 5 chr3 42110975 42111169 -175925989 - AluSx SINE Alu -100 212 14 352 276 82 112 chr3 42112236 42112990 -175924168 - L1M2 LINE L1 -5599 1250 509 233 227 27 13 chr3 42113715 42113790 -175923368 - L1MB8 LINE L1 0 6178 6103 636 158 126 24 chr3 42115306 42115433 -175921725 + FAM SINE Alu 20 159 -26 200 200 0 71 chr3 42115545 42115630 -175921528 + T-rich Low_complexity Low_complexity 4 82 0 187 250 0 133 chr3 42115733 42115853 -175921305 - MIR3 SINE MIR -13 195 92 24 53 0 0 chr3 42116140 42116178 -175920980 + AT_rich Low_complexity Low_complexity 1 38 0 799 183 108 9 chr3 42116357 42116570 -175920588 + L1MA8 LINE L1 6056 6289 -2 1301 171 171 49 chr3 42116753 42117057 -175920101 + MER47B DNA MER2_type 1 341 -77 1023 193 10 34 chr3 42117061 42117268 -175919890 - AluJo SINE Alu -27 285 84 312 203 108 0 chr3 42117268 42117342 -175919816 + MER47B DNA MER2_type 337 418 0 674 190 154 72 chr3 42117607 42117721 -175919437 - MER58C DNA MER1_type -2209 211 108 2285 93 0 7 chr3 42117721 42118022 -175919136 + AluSc SINE Alu 4 302 -7 674 190 154 72 chr3 42118022 42118102 -175919056 - MER58C DNA MER1_type -2312 108 1 2129 95 41 3 chr3 42118120 42118415 -175918743 + AluSx SINE Alu 3 308 -4 889 221 0 0 chr3 42118775 42118938 -175918220 - FAM SINE Alu -12 163 1 2220 95 0 10 chr3 42119040 42119334 -175917824 - AluY SINE Alu -20 291 1 2310 86 0 23 chr3 42119334 42119636 -175917522 - AluSq SINE Alu -18 295 1 1978 115 12 53 chr3 42119648 42119969 -175917189 - AluSg SINE Alu -2 308 1 854 198 50 25 chr3 42119969 42120171 -175916987 - MER57-int LTR ERV1 -997 6540 6334 2162 116 0 3 chr3 42120188 42120480 -175916678 - AluSc SINE Alu -18 291 1 189 0 0 0 chr3 42120587 42120608 -175916550 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1204 151 41 0 chr3 42121825 42122043 -175915115 + L1MA8 LINE L1 6059 6285 -6 22 35 0 0 chr3 42122044 42122073 -175915085 + AT_rich Low_complexity Low_complexity 1 29 0 1718 159 20 30 chr3 42122193 42122495 -175914663 - AluJb SINE Alu -13 299 1 2263 113 0 3 chr3 42123253 42123563 -175913595 - AluSx SINE Alu -3 309 1 23 33 0 0 chr3 42123607 42123637 -175913521 + AT_rich Low_complexity Low_complexity 1 30 0 2180 120 0 0 chr3 42123797 42124097 -175913061 - AluSg SINE Alu -9 301 2 399 246 136 88 chr3 42124164 42124620 -175912538 - L1MEd LINE L1 -4862 1257 780 267 263 21 11 chr3 42124624 42124719 -175912439 - LTR33A LTR ERVL -7 516 421 1840 134 71 0 chr3 42125925 42126208 -175910950 + AluJb SINE Alu 1 303 -9 292 214 177 102 chr3 42126641 42126856 -175910302 - L2 LINE L2 -410 2904 2674 2064 118 34 0 chr3 42127347 42127644 -175909514 - AluSx SINE Alu -5 307 1 2984 159 75 38 chr3 42128203 42128289 -175908869 + L1MB7 LINE L1 5524 5605 -579 1924 157 10 0 chr3 42128289 42128589 -175908569 + AluSx SINE Alu 1 303 -9 2984 159 75 38 chr3 42128589 42129131 -175908027 + L1MB7 LINE L1 5605 6175 -9 387 0 0 0 chr3 42129514 42129557 -175907601 + (TA)n Simple_repeat Simple_repeat 1 43 0 2204 103 7 3 chr3 42130498 42130790 -175906368 - AluSx SINE Alu -19 293 1 368 292 11 59 chr3 42131418 42131621 -175905537 + L1ME4a LINE L1 5674 5868 -253 337 226 212 14 chr3 42131695 42131841 -175905317 - MIR SINE MIR -1 261 87 334 224 230 13 chr3 42131869 42132021 -175905137 - L1ME3 LINE L1 -1 6161 5977 2261 82 7 33 chr3 42132215 42132521 -175904637 + AluSc SINE Alu 1 298 -11 196 325 38 0 chr3 42132523 42132603 -175904555 - L2 LINE L2 -779 2535 2453 * 441 315 95 42 chr3 42132602 42132961 -175904197 - L2 LINE L2 0 3313 2936 2247 153 25 3 chr3 42133459 42133826 -175903332 - L1PA12 LINE L1 -7200 381 7 2705 158 76 54 chr3 42133833 42134474 -175902684 - L1M4 LINE L1 -3105 3277 2651 1598 181 3 32 chr3 42134474 42134784 -175902374 - AluJb SINE Alu -11 301 1 2705 158 76 54 chr3 42134784 42136041 -175901117 - L1M4 LINE L1 -3731 2651 1423 2223 73 0 21 chr3 42136041 42136356 -175900802 - AluY SINE Alu 0 309 1 2705 158 76 54 chr3 42136356 42137461 -175899697 - L1M4 LINE L1 -4959 1423 18 1542 251 133 24 chr3 42137480 42138280 -175898878 - L1MC4a LINE L1 -220 7588 6586 396 0 0 0 chr3 42138280 42138324 -175898834 + (TG)n Simple_repeat Simple_repeat 2 45 0 1542 251 133 24 chr3 42138324 42138488 -175898670 - L1MC4a LINE L1 -1222 6586 6441 2068 118 28 0 chr3 42138839 42139127 -175898031 + AluSx SINE Alu 1 296 -16 321 289 70 9 chr3 42140063 42140177 -175896981 - MIR SINE MIR -77 185 65 351 262 111 29 chr3 42140983 42141196 -175895962 + L1MC5 LINE L1 7029 7249 -737 1678 159 54 4 chr3 42141199 42141475 -175895683 + AluJb SINE Alu 3 292 -20 484 244 72 17 chr3 42141588 42141768 -175895390 + L1MC5 LINE L1 7714 7903 -58 279 0 0 0 chr3 42142442 42142473 -175894685 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1909 119 4 0 chr3 42142499 42142759 -175894399 - AluSx SINE Alu -51 261 1 1344 152 5 5 chr3 42143486 42143696 -175893462 - AluJb SINE Alu -20 292 83 2941 81 3 3 chr3 42143915 42144286 -175892872 - L1PB1 LINE L1 0 6151 5781 1443 93 5 5 chr3 42144321 42144526 -175892632 - L1PB1 LINE L1 -359 5792 5588 652 224 39 11 chr3 42144635 42144814 -175892344 + L1M4 LINE L1 4992 5175 -971 2115 139 3 0 chr3 42144858 42145161 -175891997 + AluSx SINE Alu 1 304 -8 1188 148 120 4 chr3 42145175 42145506 -175891652 + L1M4 LINE L1 5164 5528 -646 1878 140 32 0 chr3 42145603 42145888 -175891270 - AluSx SINE Alu -18 294 1 203 0 0 36 chr3 42145891 42145919 -175891239 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2016 114 3 10 chr3 42146110 42146122 -175891036 - AluSg SINE Alu -15 295 284 204 67 0 0 chr3 42146122 42146152 -175891006 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2016 114 3 10 chr3 42146152 42146436 -175890722 - AluSg SINE Alu -26 284 1 180 0 0 0 chr3 42146436 42146456 -175890702 + (T)n Simple_repeat Simple_repeat 1 20 0 7873 12 0 0 chr3 42146574 42147466 -175889692 - L1HS LINE L1 0 6155 5265 22 0 0 0 chr3 42147611 42147633 -175889525 + AT_rich Low_complexity Low_complexity 1 22 0 1816 175 0 23 chr3 42147805 42148114 -175889044 + AluJo SINE Alu 1 302 -10 310 274 19 70 chr3 42148138 42148295 -175888863 - L1MC5 LINE L1 -64 7897 7749 2366 122 79 32 chr3 42148755 42149198 -175887960 - L1MB4 LINE L1 -8 6172 5709 252 242 129 0 chr3 42149349 42149481 -175887677 - L1ME4a LINE L1 -190 5931 5783 1645 119 8 4 chr3 42149632 42149867 -175887291 + AluSp SINE Alu 1 236 -77 774 232 30 0 chr3 42150080 42150244 -175886914 + L1MC5 LINE L1 6665 6833 -1128 516 203 107 74 chr3 42150249 42150520 -175886638 + L1MC5 LINE L1 6896 7175 -786 1987 126 7 0 chr3 42150524 42150809 -175886349 + AluSx SINE Alu 7 293 -19 288 129 29 14 chr3 42150809 42150828 -175886330 + (TA)n Simple_repeat Simple_repeat 2 19 -53 1551 147 16 93 chr3 42150828 42151141 -175886017 + AluJb SINE Alu 1 289 -23 288 129 29 14 chr3 42151141 42151191 -175885967 + (TA)n Simple_repeat Simple_repeat 19 72 0 1829 176 0 7 chr3 42151364 42151660 -175885498 + AluJo SINE Alu 2 295 -17 609 278 30 22 chr3 42151678 42151908 -175885250 + L1MC5 LINE L1 7301 7532 -429 2246 100 10 3 chr3 42151910 42152209 -175884949 + AluSq SINE Alu 1 301 -12 1145 201 83 11 chr3 42152222 42152500 -175884658 + L1M4 LINE L1 4696 4993 -1153 478 260 24 53 chr3 42152513 42152682 -175884476 + L1MB3 LINE L1 13 176 -6366 2315 99 0 16 chr3 42152740 42153053 -175884105 - AluSg SINE Alu -2 308 1 801 180 0 7 chr3 42153229 42153368 -175883790 - AluJo SINE Alu -169 143 6 260 366 0 0 chr3 42153391 42153492 -175883666 - L1MC4 LINE L1 -613 7429 7329 245 260 10 67 chr3 42153576 42153680 -175883478 - L1M4c LINE L1 -6286 98 1 * 351 121 0 0 chr3 42153662 42153720 -175883438 - L1M4 LINE L1 -1153 4993 4936 2826 219 89 47 chr3 42153768 42153876 -175883282 + L1MB3 LINE L1 216 318 -6354 396 0 0 0 chr3 42153876 42153920 -175883238 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2826 219 89 47 chr3 42153920 42154197 -175882961 + L1MB3 LINE L1 318 582 -6090 2508 128 0 20 chr3 42154197 42154541 -175882617 + MER1B DNA MER1_type 1 337 0 2826 219 89 47 chr3 42154541 42155420 -175881738 + L1MB3 LINE L1 582 1423 -5249 2051 145 3 0 chr3 42155420 42155731 -175881427 + AluSx SINE Alu 1 312 0 2826 219 89 47 chr3 42155731 42155938 -175881220 + L1MB3 LINE L1 1423 6314 -358 224 281 42 42 chr3 42156005 42156101 -175881057 + L2 LINE L2 3170 3265 -7 1574 138 62 49 chr3 42156522 42156847 -175880311 + L1MA7 LINE L1 5961 6289 -2 21 0 0 0 chr3 42156848 42156869 -175880289 + AT_rich Low_complexity Low_complexity 1 21 0 843 153 0 23 chr3 42158102 42158233 -175878925 + FLAM_C SINE Alu 1 128 -5 1685 166 39 7 chr3 42158824 42159108 -175878050 + AluJb SINE Alu 1 293 -19 316 338 26 26 chr3 42159216 42159370 -175877788 + MIR SINE MIR 1 154 -108 2174 119 53 61 chr3 42159458 42159499 -175877659 - THE1C LTR MaLR 0 375 335 2397 100 0 0 chr3 42159499 42159798 -175877360 + AluY SINE Alu 1 299 -12 2174 119 53 61 chr3 42159798 42160134 -175877024 - THE1C LTR MaLR -40 335 1 2417 82 0 0 chr3 42163348 42163651 -175873507 + AluY SINE Alu 1 303 -8 231 258 82 0 chr3 42163659 42163756 -175873402 - L1ME4a LINE L1 -12 6109 6005 2029 111 28 14 chr3 42163938 42164226 -175872932 - AluSx SINE Alu -20 292 1 875 162 0 22 chr3 42164970 42165106 -175872052 + FLAM_A SINE Alu 1 133 0 191 261 65 0 chr3 42165510 42165556 -175871602 - L2 LINE L2 -1 3271 3223 1316 206 0 0 chr3 42165987 42166206 -175870952 + MER20 DNA MER1_type 1 219 0 1342 182 10 76 chr3 42166293 42166595 -175870563 - AluJo SINE Alu -30 282 1 368 187 0 13 chr3 42166975 42167050 -175870108 + L1MB3 LINE L1 6399 6472 -209 617 144 0 0 chr3 42167050 42167140 -175870018 + 5S rRNA rRNA 1 90 -31 1014 175 27 0 chr3 42167140 42167323 -175869835 + L1MB3 LINE L1 6460 6647 -34 2009 145 0 3 chr3 42167420 42167717 -175869441 + AluSx SINE Alu 1 296 -16 829 120 49 21 chr3 42167724 42167866 -175869292 + FRAM SINE Alu 20 165 -11 384 336 123 5 chr3 42168331 42168542 -175868616 + MIR SINE MIR 4 239 -23 2584 156 8 34 chr3 42168708 42168872 -175868286 - L1MB2 LINE L1 -1 6170 6003 2284 108 0 0 chr3 42168872 42169169 -175867989 + AluSg SINE Alu 1 297 -13 2584 156 8 34 chr3 42169169 42169480 -175867678 - L1MB2 LINE L1 -168 6003 5707 270 333 11 0 chr3 42169500 42169587 -175867571 + L2 LINE L2 3222 3309 -4 2349 70 31 0 chr3 42169636 42169923 -175867235 + AluSx SINE Alu 5 300 -12 233 119 24 0 chr3 42170716 42170758 -175866400 + CT-rich Low_complexity Low_complexity 3 45 0 1555 187 0 28 chr3 42170763 42171046 -175866112 - AluJb SINE Alu -37 275 1 708 149 0 9 chr3 42171081 42171195 -175865963 - FLAM_A SINE Alu -2 140 28 1786 175 19 7 chr3 42171406 42171714 -175865444 - AluSx SINE Alu 0 312 1 1888 107 12 0 chr3 42171911 42172164 -175864994 + AluSx SINE Alu 1 256 -56 870 102 0 8 chr3 42172576 42172694 -175864464 + AluSq/x SINE Alu 20 136 -176 1991 114 3 26 chr3 42172694 42173002 -175864156 + AluSc SINE Alu 1 301 -8 322 286 67 0 chr3 42173114 42173233 -175863925 - L1M4 LINE L1 -845 5301 5175 1407 131 12 106 chr3 42173652 42173981 -175863177 + L1MB7 LINE L1 5717 6014 -170 428 153 27 19 chr3 42174641 42174728 -175862430 - L1M4 LINE L1 -1271 4875 4790 2252 114 0 0 chr3 42174728 42175026 -175862132 - AluSc SINE Alu -11 298 1 428 153 27 19 chr3 42175026 42175146 -175862012 - L1M4 LINE L1 -1356 4790 4538 985 166 0 115 chr3 42175146 42175319 -175861839 - AluJo SINE Alu -18 294 153 2262 107 0 10 chr3 42175319 42175629 -175861529 - AluSg1 SINE Alu -2 307 1 985 166 0 115 chr3 42175629 42175690 -175861468 - AluJo SINE Alu -159 153 87 1956 141 0 7 chr3 42175729 42176020 -175861138 - AluSg SINE Alu -17 293 5 2340 83 3 10 chr3 42176093 42176406 -175860752 - AluY SINE Alu 0 311 1 2336 87 7 0 chr3 42176406 42176706 -175860452 - AluSg SINE Alu -8 302 1 774 157 25 69 chr3 42177055 42177259 -175859899 + MER65A-int LTR ERV1 3536 3730 -2868 2786 201 87 95 chr3 42177337 42178594 -175858564 + MER65A-int LTR ERV1 2492 3758 -1178 1635 191 0 28 chr3 42178594 42178914 -175858244 - AluJo SINE Alu -1 311 1 2786 201 87 95 chr3 42178914 42179008 -175858150 + MER65A-int LTR ERV1 3758 3851 -1085 2149 137 0 0 chr3 42179008 42179315 -175857843 - AluSx SINE Alu -5 307 1 2786 201 87 95 chr3 42179315 42179385 -175857773 + MER65A-int LTR ERV1 3851 3920 -1016 1786 155 0 39 chr3 42179385 42179694 -175857464 - AluJb SINE Alu -13 299 3 2786 201 87 95 chr3 42179694 42179963 -175857195 + MER65A-int LTR ERV1 3920 4089 -847 1932 215 79 36 chr3 42179951 42180315 -175856843 + MER65A-int LTR ERV1 3605 3999 -872 * 2174 103 7 26 chr3 42180315 42180617 -175856541 - AluSx SINE Alu -16 296 1 1932 215 79 36 chr3 42180617 42180758 -175856400 + MER65A-int LTR ERV1 3999 4132 -739 2447 224 55 24 chr3 42180758 42181374 -175855784 + MER65A-int LTR ERV1 4237 4871 0 253 119 0 0 chr3 42181376 42181418 -175855740 + MER65A LTR ERV1 3 44 -401 2513 66 0 0 chr3 42181431 42181734 -175855424 + AluY SINE Alu 1 303 -8 2230 111 3 0 chr3 42181738 42182026 -175855132 + AluSx SINE Alu 1 289 -23 827 78 102 16 chr3 42182057 42182185 -175854973 + MER65A LTR ERV1 44 182 -263 1316 94 22 0 chr3 42182313 42182493 -175854665 + AluSg/x SINE Alu 110 293 -17 1860 250 105 29 chr3 42182570 42182924 -175854234 + L1M4 LINE L1 3977 4303 -1843 1462 183 66 4 chr3 42182924 42183197 -175853961 - AluJb SINE Alu -22 290 1 1860 250 105 29 chr3 42183197 42183641 -175853517 + L1M4 LINE L1 4303 4836 -1310 826 185 76 42 chr3 42184192 42184316 -175852842 - LTR56 LTR ERV1 0 445 327 2298 98 3 0 chr3 42184316 42184611 -175852547 - AluSc SINE Alu -9 300 5 826 185 76 42 chr3 42184611 42184806 -175852352 - LTR56 LTR ERV1 -118 327 141 722 209 228 5 chr3 42184916 42185127 -175852031 + MIR SINE MIR 2 259 -3 2578 37 7 0 chr3 42185499 42185796 -175851362 - AluY SINE Alu -12 299 1 23 54 0 0 chr3 42187062 42187099 -175850059 + AT_rich Low_complexity Low_complexity 1 37 0 2193 52 0 49 chr3 42188887 42189173 -175847985 - AluY SINE Alu 0 311 40 1736 171 0 23 chr3 42189189 42189488 -175847670 + AluJo SINE Alu 1 292 -20 329 159 0 16 chr3 42190113 42190176 -175846982 - MIR SINE MIR -131 131 70 358 43 0 0 chr3 42190697 42190743 -175846415 - L1PA3 LINE L1 -181 5974 5929 607 14 0 0 chr3 42190743 42190814 -175846344 + L1PA3 LINE L1 6082 6152 -3 2048 148 0 0 chr3 42191130 42191434 -175845724 - AluSx SINE Alu -8 304 1 1753 124 11 4 chr3 42191573 42191838 -175845320 - ERVL LTR ERVL -414 5350 5084 876 173 0 81 chr3 42191914 42192087 -175845071 + FRAM SINE Alu 1 158 -18 186 118 0 0 chr3 42192460 42192494 -175844664 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 401 317 50 35 chr3 42192927 42193129 -175844029 + MIR SINE MIR 9 213 -49 2155 112 31 0 chr3 42193376 42193662 -175843496 - AluSx SINE Alu -15 297 3 695 184 0 0 chr3 42193700 42193809 -175843349 + FLAM_C SINE Alu 2 110 -33 282 29 0 0 chr3 42193815 42193850 -175843308 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5665 217 71 33 chr3 42194195 42194482 -175842676 - L1MEc LINE L1 -2271 3944 3669 1718 187 11 0 chr3 42194482 42194765 -175842393 + AluJo SINE Alu 10 295 -17 1975 92 96 11 chr3 42194771 42195052 -175842106 + AluY SINE Alu 1 305 -6 5665 217 71 33 chr3 42195052 42195181 -175841977 - L1MEc LINE L1 -2550 3665 3542 2104 100 52 3 chr3 42195181 42195470 -175841688 - AluSq SINE Alu -10 303 1 5665 217 71 33 chr3 42195470 42196684 -175840474 - L1MEc LINE L1 -2673 3542 2376 2106 107 28 0 chr3 42196684 42196974 -175840184 - AluY SINE Alu -13 298 1 5665 217 71 33 chr3 42196974 42197125 -175840033 - L1MEc LINE L1 -3839 2376 2232 2119 137 0 9 chr3 42197125 42197440 -175839718 - AluSx SINE Alu 0 312 1 5665 217 71 33 chr3 42197440 42197685 -175839473 - L1MEc LINE L1 -3983 2232 1842 273 57 0 0 chr3 42197685 42197720 -175839438 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1865 145 0 4 chr3 42197726 42198002 -175839156 - AluSx SINE Alu -37 275 1 1619 108 29 43 chr3 42198227 42198505 -175838653 + AluSx SINE Alu 20 293 -19 4681 223 66 18 chr3 42198506 42199719 -175837439 + L1M4 LINE L1 2209 3493 -2653 2104 100 52 3 chr3 42199719 42200008 -175837150 + AluSq SINE Alu 1 303 -10 4681 223 66 18 chr3 42200008 42200124 -175837034 + L1M4 LINE L1 3493 3602 -2544 1921 93 96 11 chr3 42200138 42200418 -175836740 - AluY SINE Alu -7 304 1 784 257 135 35 chr3 42200448 42200825 -175836333 - MER50 LTR ERV1 -298 436 22 2035 183 57 5 chr3 42200831 42201214 -175835944 - MER61C LTR ERV1 0 434 32 9047 162 49 35 chr3 42201215 42202322 -175834836 - MER41-int LTR ERV1 -917 5029 3939 2242 110 13 0 chr3 42202322 42202623 -175834535 - AluSg SINE Alu -5 305 1 2244 116 0 0 chr3 42202628 42202929 -175834229 - AluSx SINE Alu -9 303 3 9047 162 49 35 chr3 42202929 42203952 -175833206 - MER41-int LTR ERV1 -2010 3936 3214 2400 53 0 7 chr3 42203952 42204266 -175832892 - AluY SINE Alu 0 312 1 9047 162 49 35 chr3 42204266 42204277 -175832881 - MER41-int LTR ERV1 -2732 3214 3205 2158 52 0 49 chr3 42204278 42204564 -175832594 - AluY SINE Alu 0 311 40 1736 171 0 23 chr3 42204580 42204879 -175832279 + AluJo SINE Alu 1 292 -20 329 159 0 16 chr3 42205378 42205441 -175831717 - MIR SINE MIR -131 131 70 358 43 0 0 chr3 42205962 42206008 -175831150 - L1PA4 LINE L1 -181 5974 5929 607 14 0 0 chr3 42206008 42206079 -175831079 + L1PA3 LINE L1 6082 6152 -3 2048 148 0 0 chr3 42206395 42206699 -175830459 - AluSx SINE Alu -8 304 1 1753 124 11 4 chr3 42206838 42207103 -175830055 - ERVL LTR ERVL -414 5350 5084 876 173 0 81 chr3 42207179 42207352 -175829806 + FRAM SINE Alu 1 158 -18 186 118 0 0 chr3 42207725 42207759 -175829399 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 401 317 50 35 chr3 42208192 42208394 -175828764 + MIR SINE MIR 9 213 -49 2141 134 0 3 chr3 42208641 42208939 -175828219 - AluSx SINE Alu -15 297 1 863 178 0 67 chr3 42208939 42209119 -175828039 + MER50 LTR ERV1 566 733 -1 372 203 0 0 chr3 42209120 42209184 -175827974 - LTR39 LTR ERV1 -390 393 330 1077 180 14 23 chr3 42209184 42209401 -175827757 + AluJb SINE Alu 85 299 -13 754 126 8 63 chr3 42209403 42209530 -175827628 - LTR39 LTR ERV1 -446 337 218 1852 149 20 7 chr3 42209531 42209827 -175827331 + AluSq SINE Alu 1 300 -13 185 81 0 27 chr3 42209880 42209917 -175827241 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 336 245 73 26 chr3 42210020 42210171 -175826987 + LTR23-int LTR ERV1 853 1010 -4113 1315 172 127 15 chr3 42210171 42210438 -175826720 + AluJo SINE Alu 1 297 -15 2315 71 3 3 chr3 42210498 42210781 -175826377 + AluY SINE Alu 1 310 0 211 37 0 0 chr3 42210781 42210808 -175826350 + (CAAA)n Simple_repeat Simple_repeat 2 128 0 843 236 34 14 chr3 42210878 42211086 -175826072 + LTR23-int LTR ERV1 5825 6036 -1501 443 86 0 0 chr3 42211084 42211146 -175826012 - AluSp SINE Alu -14 299 240 2525 10 0 19 chr3 42211146 42211454 -175825704 - pTR5 LTR ERV1 0 2438 2137 376 218 36 54 chr3 42211454 42211565 -175825593 - LTR30 LTR ERV1 -80 642 375 13824 27 0 4 chr3 42211565 42213751 -175823407 - pTR5 LTR ERV1 0 8399 504 635 126 35 152 chr3 42213749 42214091 -175823067 - Harlequin LTR ERV1 -5755 1141 840 * 37439 77 2 15 chr3 42214092 42219434 -175817724 - Harlequin LTR ERV1 -1935 503 1 371 235 10 0 chr3 42219434 42219532 -175817626 - LTR30 LTR ERV1 -80 642 544 954 73 0 44 chr3 42219532 42219672 -175817486 - pTR5 LTR ERV1 -413 2025 1880 1829 107 8 0 chr3 42219672 42219914 -175817244 - AluSp SINE Alu -67 246 3 954 73 0 44 chr3 42219914 42219930 -175817228 - pTR5 LTR ERV1 -558 1880 130 674 196 153 37 chr3 42219932 42220006 -175817152 + MER58C DNA MER1_type 1 65 -2355 2513 79 0 0 chr3 42220006 42220311 -175816847 - AluSc SINE Alu -1 308 4 674 196 153 37 chr3 42220311 42220425 -175816733 + MER58C DNA MER1_type 65 211 -4 306 203 108 0 chr3 42220690 42220764 -175816394 - MER47B DNA MER2_type 0 418 337 1029 193 10 34 chr3 42220764 42220971 -175816187 + AluJo SINE Alu 84 285 -27 1292 171 171 49 chr3 42220975 42221279 -175815879 - MER47B DNA MER2_type -77 341 1 780 183 108 9 chr3 42221462 42221675 -175815483 - L1MA8 LINE L1 -2 6289 6056 25 51 0 0 chr3 42221853 42221892 -175815266 + AT_rich Low_complexity Low_complexity 1 39 0 2325 96 0 7 chr3 42222100 42222401 -175814757 + AluSx SINE Alu 1 299 -13 1084 212 165 6 chr3 42222491 42222812 -175814346 - L1MD3 LINE L1 -1 7994 7623 24 0 0 0 chr3 42223090 42223114 -175814044 + AT_rich Low_complexity Low_complexity 1 24 0 1709 152 25 22 chr3 42223144 42223420 -175813738 - AluJb SINE Alu -35 277 1 309 315 103 10 chr3 42223514 42223700 -175813458 + L2 LINE L2 1221 1429 -1885 2266 113 0 13 chr3 42223700 42224009 -175813149 - AluSg SINE Alu -4 306 2 309 315 103 10 chr3 42224009 42224025 -175813133 + L2 LINE L2 1429 1442 -1872 374 246 136 88 chr3 42224076 42224532 -175812626 - L1MEd LINE L1 -4862 1257 780 267 263 21 11 chr3 42224536 42224631 -175812527 - LTR33A LTR ERVL -7 516 421 1852 134 71 0 chr3 42225839 42226122 -175811036 + AluJb SINE Alu 1 303 -9 235 214 177 102 chr3 42226555 42226770 -175810388 - L2 LINE L2 -410 2904 2674 2078 118 34 0 chr3 42227261 42227558 -175809600 - AluSx SINE Alu -5 307 1 2952 159 75 38 chr3 42228117 42228203 -175808955 + L1MB7 LINE L1 5524 5605 -579 1940 157 10 0 chr3 42228203 42228503 -175808655 + AluSx SINE Alu 1 303 -9 2952 159 75 38 chr3 42228503 42229045 -175808113 + L1MB7 LINE L1 5605 6175 -9 2311 98 3 0 chr3 42229397 42229692 -175807466 + AluSp SINE Alu 13 308 -5 582 182 81 7 chr3 42229722 42229870 -175807288 + L1MC/D LINE L1 5315 5473 -2335 361 269 76 7 chr3 42229875 42230020 -175807138 - L2 LINE L2 -804 2510 2356 959 128 0 8 chr3 42230020 42230153 -175807005 + AluSq/x SINE Alu 1 132 -180 2002 137 3 13 chr3 42230156 42230469 -175806689 + AluSg SINE Alu 1 310 0 669 155 0 9 chr3 42230680 42230796 -175806362 + FLAM_A SINE Alu 28 142 0 1146 221 4 33 chr3 42230829 42231101 -175806057 + AluJb SINE Alu 1 264 -48 313 350 28 11 chr3 42231220 42231397 -175805761 + CT-rich Low_complexity Low_complexity 1 180 0 27 56 0 0 chr3 42231730 42231766 -175805392 + GC_rich Low_complexity Low_complexity 1 36 0 1594 106 4 13 chr3 42231919 42232156 -175805002 - AluY SINE Alu -76 235 1 31 0 0 0 chr3 42232197 42232228 -175804930 + AT_rich Low_complexity Low_complexity 1 31 0 1955 127 10 19 chr3 42232565 42232879 -175804279 - AluY SINE Alu 0 311 1 1076 150 6 0 chr3 42233537 42233704 -175803454 - AluSx SINE Alu -5 305 138 207 235 0 0 chr3 42233736 42233787 -175803371 + (TA)n Simple_repeat Simple_repeat 2 52 0 2375 96 0 0 chr3 42233937 42234239 -175802919 - AluSx SINE Alu -10 302 1 888 135 0 15 chr3 42234242 42234375 -175802783 - AluSx SINE Alu -181 131 1 358 269 76 7 chr3 42234375 42234520 -175802638 + L2 LINE L2 2356 2510 -804 582 182 81 7 chr3 42234525 42234673 -175802485 - L1MC/D LINE L1 -2335 5473 5315 2392 97 0 7 chr3 42234703 42235013 -175802145 - AluSp SINE Alu -5 308 1 2242 102 20 10 chr3 42235032 42235336 -175801822 - AluSc SINE Alu -2 307 1 1421 224 20 92 chr3 42235339 42235669 -175801489 - L1MC/D LINE L1 -2210 3936 3584 2072 75 0 0 chr3 42235669 42235921 -175801237 + AluSx SINE Alu 38 289 -23 1421 224 20 92 chr3 42235921 42235985 -175801173 - L1MC/D LINE L1 -2562 3584 3581 2138 121 21 0 chr3 42235985 42236275 -175800883 + AluSx SINE Alu 1 296 -16 1421 224 20 92 chr3 42236275 42236370 -175800788 - L1MC/D LINE L1 -2565 3581 3481 2058 125 4 0 chr3 42238251 42238570 -175798588 - AluSx SINE Alu 0 320 1 2221 126 3 0 chr3 42239112 42239414 -175797744 - AluSq SINE Alu -10 303 1 27 29 0 0 chr3 42240220 42240254 -175796904 + AT_rich Low_complexity Low_complexity 1 34 0 496 231 19 0 chr3 42242340 42242444 -175794714 - MER5A DNA MER1_type -80 109 4 3275 247 52 40 chr3 42242871 42243059 -175794099 + L1MEc LINE L1 236 420 -5976 851 165 0 0 chr3 42243059 42243192 -175793966 + FLAM_C SINE Alu 1 133 0 3275 247 52 40 chr3 42243192 42243817 -175793341 + L1MEc LINE L1 420 1071 -5325 2112 129 3 23 chr3 42243817 42244127 -175793031 + AluSx SINE Alu 1 304 -8 3275 247 52 40 chr3 42244127 42244503 -175792655 + L1MEc LINE L1 1071 1441 -4955 929 172 0 0 chr3 42244504 42244649 -175792509 + AluSg/x SINE Alu 133 277 -35 183 80 0 0 chr3 42244649 42244674 -175792484 + (GA)n Simple_repeat Simple_repeat 2 26 0 822 52 10 0 chr3 42244939 42245036 -175792122 - AluY SINE Alu -213 98 1 541 261 119 0 chr3 42245036 42245254 -175791904 + L1MEc LINE L1 1610 1853 -4543 2318 95 0 3 chr3 42245256 42245561 -175791597 + AluSx SINE Alu 1 304 -8 305 294 67 0 chr3 42245673 42245792 -175791366 - L1M4 LINE L1 -845 5301 5175 2115 140 31 76 chr3 42246208 42246693 -175790465 + L1MB7 LINE L1 5713 6175 -9 200 119 48 24 chr3 42248018 42248060 -175789098 + T-rich Low_complexity Low_complexity 5 47 0 246 212 35 35 chr3 42248180 42248265 -175788893 - L1MC5 LINE L1 -24 7937 7853 238 141 78 0 chr3 42249530 42249594 -175787564 + CT-rich Low_complexity Low_complexity 3 71 0 290 125 42 0 chr3 42249600 42249648 -175787510 - U7 snRNA snRNA 0 63 14 246 79 0 53 chr3 42250129 42250167 -175786991 - Alu SINE Alu -264 36 1 2406 83 0 3 chr3 42250245 42250546 -175786612 - AluY SINE Alu -11 300 1 1076 150 6 0 chr3 42251204 42251371 -175785787 - AluSg/x SINE Alu -5 305 138 207 235 0 0 chr3 42251403 42251454 -175785704 + (TA)n Simple_repeat Simple_repeat 2 52 0 2363 87 13 0 chr3 42251604 42251902 -175785256 - AluSx SINE Alu -10 302 1 409 239 174 36 chr3 42252593 42252720 -175784438 - L1MC5 LINE L1 -37 7924 7816 2153 136 0 3 chr3 42252720 42253021 -175784137 - AluSx SINE Alu -12 300 1 409 239 174 36 chr3 42253021 42253169 -175783989 - L1MC5 LINE L1 -145 7816 7611 194 156 22 0 chr3 42255385 42255430 -175781728 + CT-rich Low_complexity Low_complexity 3 48 0 25 0 0 0 chr3 42256246 42256271 -175780887 + AT_rich Low_complexity Low_complexity 1 25 0 514 227 47 31 chr3 42257550 42257678 -175779480 - FLAM_A SINE Alu -12 130 1 584 159 0 37 chr3 42258031 42258138 -175779020 - AluJo SINE Alu -17 295 193 687 171 0 8 chr3 42258147 42258264 -175778894 - AluJo SINE Alu -186 116 1 1348 168 226 125 chr3 42258266 42259137 -175778021 - Charlie2 DNA MER1_type -36 2826 1868 967 194 17 6 chr3 42259141 42259321 -175777837 - AluJb SINE Alu -11 301 120 2373 85 0 3 chr3 42259382 42259677 -175777481 - AluSg SINE Alu -16 294 1 753 133 0 108 chr3 42259685 42259843 -175777315 - FLAM_C SINE Alu -1 142 2 289 162 297 0 chr3 42259852 42259926 -175777232 - Charlie2 DNA MER1_type -2504 278 183 588 102 19 19 chr3 42260202 42260310 -175776848 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 324 289 31 23 chr3 42262016 42262144 -175775014 - L2 LINE L2 -26 3287 3159 1124 177 27 69 chr3 42262891 42263341 -175773817 - L1MA4A LINE L1 -25 6278 5787 377 284 117 22 chr3 42263658 42263880 -175773278 - L1MD2 LINE L1 0 6359 6117 * 1417 183 244 21 chr3 42263876 42264356 -175772802 - L1MD2 LINE L1 0 6359 5773 416 208 104 45 chr3 42265674 42265828 -175771330 - L1MC5 LINE L1 -55 7906 7744 300 311 49 33 chr3 42266178 42266300 -175770858 + MIR3 SINE MIR 56 179 -29 276 100 0 0 chr3 42267999 42268039 -175769119 + (T)n Simple_repeat Simple_repeat 1 40 0 764 202 40 83 chr3 42268795 42269023 -175768135 - MER58A DNA MER1_type -6 218 1 275 162 0 44 chr3 42269371 42269439 -175767719 - L1M2 LINE L1 -463 5658 5609 1672 161 48 17 chr3 42269446 42269563 -175767595 + AluJb SINE Alu 3 115 -197 372 22 0 0 chr3 42269563 42269608 -175767550 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1672 161 48 17 chr3 42269608 42269781 -175767377 + AluJb SINE Alu 115 302 -10 446 272 69 6 chr3 42269839 42270012 -175767146 - L1MB7 LINE L1 0 6184 6001 357 316 141 51 chr3 42271448 42272089 -175765069 - L2 LINE L2 -4 3309 2583 647 252 122 14 chr3 42272223 42272437 -175764721 - L2 LINE L2 -976 2338 2102 279 0 0 0 chr3 42275639 42275670 -175761488 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2522 62 0 7 chr3 42275703 42276009 -175761149 - AluY SINE Alu -7 304 1 2014 130 0 31 chr3 42276153 42276476 -175760682 - AluSq SINE Alu 0 313 1 2103 68 43 7 chr3 42278753 42279033 -175758125 - AluSg SINE Alu -16 294 5 205 339 18 36 chr3 42279085 42279197 -175757961 + MER5B DNA MER1_type 69 178 0 2045 137 0 7 chr3 42279227 42279519 -175757639 - AluSx SINE Alu -22 290 1 789 137 150 7 chr3 42279882 42280035 -175757123 + MSTD LTR MaLR 222 396 0 294 179 51 3 chr3 42281013 42281094 -175756064 + L1ME3A LINE L1 5457 5538 -628 679 215 236 41 chr3 42281116 42281460 -175755698 + L1ME3A LINE L1 5656 6066 -104 2050 89 79 10 chr3 42282139 42282431 -175754727 - AluSp SINE Alu -1 312 1 274 289 66 0 chr3 42282806 42282882 -175754276 - MIR SINE MIR -88 174 94 2246 89 10 10 chr3 42283221 42283523 -175753635 - AluSp SINE Alu -11 302 1 2221 102 20 10 chr3 42283542 42283846 -175753312 - AluSc SINE Alu -2 307 1 1132 230 13 95 chr3 42283849 42284179 -175752979 - L1M4 LINE L1 -2210 3936 3580 2042 75 0 0 chr3 42284179 42284431 -175752727 + AluSx SINE Alu 38 289 -23 1132 230 13 95 chr3 42284431 42284495 -175752663 - L1M4 LINE L1 -2566 3580 3584 2114 124 21 0 chr3 42284495 42284785 -175752373 + AluSx SINE Alu 1 296 -16 1132 230 13 95 chr3 42284785 42284862 -175752296 - L1M4 LINE L1 -2561 3585 3503 2035 125 4 0 chr3 42286762 42287081 -175750077 - AluSx SINE Alu 0 320 1 2219 126 3 0 chr3 42287623 42287925 -175749233 - AluSq SINE Alu -10 303 1 27 29 0 0 chr3 42288731 42288765 -175748393 + AT_rich Low_complexity Low_complexity 1 34 0 545 224 160 19 chr3 42290799 42290955 -175746203 - MER5A DNA MER1_type -8 181 4 187 386 68 15 chr3 42291194 42291326 -175745832 - MIR3 SINE MIR -58 150 12 2950 244 49 45 chr3 42291391 42291570 -175745588 + L1MEc LINE L1 242 419 -5977 851 149 0 0 chr3 42291570 42291691 -175745467 + FLAM_C SINE Alu 1 121 -12 2950 244 49 45 chr3 42291691 42292329 -175744829 + L1MEc LINE L1 419 1068 -5328 1997 133 10 23 chr3 42292329 42292637 -175744521 + AluSx SINE Alu 1 304 -8 2950 244 49 45 chr3 42292637 42293013 -175744145 + L1MEc LINE L1 1068 1441 -4955 918 172 0 0 chr3 42293014 42293159 -175743999 + AluSg/x SINE Alu 131 275 -35 325 344 38 8 chr3 42293181 42293312 -175743846 + HAL1 LINE L1 1413 1547 -960 1406 98 0 0 chr3 42293443 42293616 -175743542 - AluSq SINE Alu -140 173 1 1333 186 74 61 chr3 42293764 42294237 -175742921 - L1MC5 LINE L1 -439 7522 7044 2218 121 0 13 chr3 42294241 42294554 -175742604 - AluSx SINE Alu -3 309 1 195 42 0 0 chr3 42294561 42294585 -175742573 + (T)n Simple_repeat Simple_repeat 1 24 0 671 267 85 8 chr3 42294603 42294861 -175742297 - L1MC4 LINE L1 -1064 6978 6701 5752 213 18 30 chr3 42294878 42295440 -175741718 - L1ME3 LINE L1 -1 6161 5594 1870 161 9 6 chr3 42295440 42295762 -175741396 - L1PA15 LINE L1 0 6165 5843 5752 213 18 30 chr3 42295762 42296731 -175740427 - L1ME3 LINE L1 -568 5594 4660 2103 145 0 0 chr3 42296731 42297034 -175740124 - AluSx SINE Alu -9 303 1 5752 213 18 30 chr3 42297034 42297564 -175739594 - L1ME3 LINE L1 -1502 4660 4125 1500 266 112 28 chr3 42297566 42297933 -175739225 - L1ME LINE L1 -573 5580 5245 2177 84 3 3 chr3 42297933 42298241 -175738917 - AluSx SINE Alu 0 308 1 2130 132 0 0 chr3 42298248 42298537 -175738621 - AluSc SINE Alu -18 291 3 1500 266 112 28 chr3 42298537 42299283 -175737875 - L1ME LINE L1 -913 5240 4364 244 135 0 0 chr3 42299307 42299344 -175737814 - Alu SINE Alu -13 289 253 433 194 76 21 chr3 42299344 42299488 -175737670 - L1ME LINE L1 -4109 2201 2050 503 114 0 0 chr3 42299612 42299682 -175737476 - AluJ/FRAM SINE Alu -18 294 225 797 269 162 41 chr3 42299727 42300042 -175737116 - L1ME LINE L1 -4501 1809 1534 1667 165 0 66 chr3 42300042 42300365 -175736793 - AluJb SINE Alu 0 303 1 797 269 162 41 chr3 42300365 42301029 -175736129 - L1ME LINE L1 -4776 1534 710 2728 174 37 7 chr3 42301968 42302281 -175734877 - L1MB5 LINE L1 -67 6107 5770 1452 204 94 3 chr3 42302281 42302599 -175734559 + MER7A DNA MER2_type 1 345 -1 2728 174 37 7 chr3 42302599 42302824 -175734334 - L1MB5 LINE L1 -404 5770 5553 274 233 89 4 chr3 42302827 42302970 -175734188 - L1MCa LINE L1 -4601 1528 1319 356 290 69 40 chr3 42303107 42303383 -175733775 - L1MCa LINE L1 -4881 1238 955 228 367 14 14 chr3 42303458 42303597 -175733561 - L1ME LINE L1 -5453 666 528 227 181 67 19 chr3 42304126 42304231 -175732927 + (TA)n Simple_repeat Simple_repeat 2 111 0 348 43 0 0 chr3 42304232 42304278 -175732880 + (TG)n Simple_repeat Simple_repeat 1 46 0 1969 141 0 4 chr3 42304278 42304555 -175732603 - AluSx SINE Alu -33 279 4 6492 146 16 51 chr3 42304557 42304867 -175732291 - L1MA4 LINE L1 -45 6255 5936 1593 206 3 3 chr3 42304867 42305163 -175731995 - AluJb SINE Alu -16 296 1 6492 146 16 51 chr3 42305163 42305188 -175731970 - L1MA4 LINE L1 -364 5936 5912 1429 160 80 23 chr3 42305188 42305450 -175731708 - AluJo SINE Alu -31 281 5 6492 146 16 51 chr3 42305450 42306329 -175730829 - L1MA4 LINE L1 -388 5912 5004 363 44 0 0 chr3 42306329 42306374 -175730784 + (CA)n Simple_repeat Simple_repeat 2 46 0 6492 146 16 51 chr3 42306374 42307407 -175729751 - L1MA4 LINE L1 -1296 5004 4052 638 220 21 0 chr3 42307402 42307588 -175729570 - L1MA4 LINE L1 -2704 3442 3253 * 261 299 26 43 chr3 42307877 42307994 -175729164 + MIR SINE MIR 73 187 -75 1038 182 6 0 chr3 42308723 42308893 -175728265 - AluSx SINE Alu -141 171 1 1990 224 52 12 chr3 42308895 42309476 -175727682 - L1M4 LINE L1 -844 5302 4699 741 194 0 8 chr3 42309528 42309662 -175727496 - FLAM_A SINE Alu 0 133 1 680 251 21 8 chr3 42309696 42309894 -175727264 - L1MC/D LINE L1 -2125 5660 5458 * 3432 240 28 47 chr3 42309868 42310222 -175726936 - L1M4 LINE L1 -1542 4604 4245 2280 100 7 3 chr3 42310222 42310523 -175726635 - AluSx SINE Alu -10 302 1 3432 240 28 47 chr3 42310523 42310771 -175726387 - L1M4 LINE L1 -1901 4245 3994 2081 129 0 10 chr3 42310771 42311073 -175726085 + AluSx SINE Alu 1 299 -13 3432 240 28 47 chr3 42311073 42311734 -175725424 - L1M4 LINE L1 -2152 3994 3365 * 6282 127 21 46 chr3 42311732 42312798 -175724360 + L1MA2 LINE L1 3476 4568 -1736 499 195 0 0 chr3 42312798 42312875 -175724283 - AluSp/q SINE Alu -38 275 199 6282 127 21 46 chr3 42312875 42314145 -175723013 + L1MA2 LINE L1 4568 5814 -490 3142 105 33 12 chr3 42314185 42314672 -175722486 + L1MA2 LINE L1 5804 6300 -4 569 270 84 9 chr3 42314673 42314899 -175722259 - L1M4 LINE L1 -2763 3383 3141 1234 156 74 33 chr3 42314901 42315169 -175721989 - AluJo SINE Alu 0 312 45 1819 197 70 29 chr3 42315170 42315252 -175721906 - L1M4 LINE L1 -3015 3131 3054 2340 100 7 3 chr3 42315252 42315561 -175721597 - AluSq SINE Alu -3 310 1 1819 197 70 29 chr3 42315561 42315960 -175721198 - L1M4 LINE L1 -3092 3054 2630 484 225 39 16 chr3 42315968 42316097 -175721061 - L1M4 LINE L1 -2392 3754 3623 513 155 21 113 chr3 42316098 42316240 -175720918 + MLT1D LTR MaLR 1 129 -376 559 203 273 0 chr3 42316288 42316431 -175720727 + MLT1D LTR MaLR 324 505 0 413 284 119 11 chr3 42316439 42316615 -175720543 - L1M4 LINE L1 -2532 3614 3420 505 248 95 9 chr3 42316626 42316836 -175720322 - L1M4 LINE L1 -2831 3315 3088 527 274 169 32 chr3 42317232 42317604 -175719554 - L1M4 LINE L1 -1592 4554 4132 2171 190 94 34 chr3 42317640 42318255 -175718903 - Zaphod DNA AcHobo -5 4026 3375 26 118 0 0 chr3 42319481 42319515 -175717643 + GC_rich Low_complexity Low_complexity 1 34 0 201 39 0 0 chr3 42319769 42319795 -175717363 + (A)n Simple_repeat Simple_repeat 1 26 0 889 221 0 0 chr3 42320160 42320323 -175716835 - FAM SINE Alu -12 163 1 1996 129 0 20 chr3 42320425 42320719 -175716439 - AluSg SINE Alu -20 290 3 675 173 0 9 chr3 42320757 42320867 -175716291 + FLAM_C SINE Alu 2 110 -33 318 26 0 0 chr3 42320873 42320912 -175716246 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 926 263 14 11 chr3 42321258 42321536 -175715622 - L1M4 LINE L1 -2271 3875 3597 1590 157 19 4 chr3 42321545 42321806 -175715352 + AluJo SINE Alu 10 274 -38 216 97 0 0 chr3 42321817 42321848 -175715310 + (TAA)n Simple_repeat Simple_repeat 3 33 0 310 169 405 14 chr3 42321848 42321996 -175715162 + L1MEc LINE L1 1842 2047 -4349 371 283 11 59 chr3 42322075 42322339 -175714819 + CT-rich Low_complexity Low_complexity 1 251 0 3364 210 30 13 chr3 42322484 42322576 -175714582 - L1MC2 LINE L1 -278 6066 5977 1506 181 27 24 chr3 42322576 42322869 -175714289 - AluJo SINE Alu -18 294 1 3364 210 30 13 chr3 42322869 42323534 -175713624 - L1MC2 LINE L1 -367 5977 5296 489 188 177 100 chr3 42323767 42323928 -175713230 - MSTA LTR MaLR -49 379 232 2206 91 0 34 chr3 42323928 42324225 -175712933 - AluSc SINE Alu -20 289 3 489 188 177 100 chr3 42324225 42324335 -175712823 - MSTA LTR MaLR -196 232 2 19964 100 23 5 chr3 42424786 42427591 -175609567 - L1P LINE L1 -3287 2859 5 201 262 184 39 chr3 42428006 42428109 -175609049 + MIR3 SINE MIR 85 202 -6 260 324 73 39 chr3 42428358 42428537 -175608621 - MIR3 SINE MIR -21 187 3 260 273 57 23 chr3 42429025 42429113 -175608045 - MIR SINE MIR -109 153 63 225 94 0 0 chr3 42430719 42430751 -175606407 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 315 0 0 0 chr3 42431058 42431093 -175606065 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 212 182 200 0 chr3 42431562 42431617 -175605541 + L2 LINE L2 3245 3310 -3 467 287 18 30 chr3 42431746 42431910 -175605248 + MIR SINE MIR 98 259 -3 430 302 62 19 chr3 42431958 42432146 -175605012 + MIR SINE MIR 7 199 -63 633 107 0 58 chr3 42432172 42432275 -175604883 + MER4A LTR ERV1 1 97 -567 * 1727 129 174 74 chr3 42432272 42432635 -175604523 + MER4A LTR ERV1 257 655 -9 1402 172 0 22 chr3 42432635 42432903 -175604255 + AluJo SINE Alu 11 272 -40 299 35 23 92 chr3 42433066 42433153 -175604005 + (CGGGGG)n Simple_repeat Simple_repeat 3 83 0 212 164 14 41 chr3 42433201 42433274 -175603884 + (CGGG)n Simple_repeat Simple_repeat 4 74 0 231 88 0 0 chr3 42433281 42433315 -175603843 + (G)n Simple_repeat Simple_repeat 1 34 0 252 212 23 53 chr3 42433353 42433485 -175603673 + (CGGGG)n Simple_repeat Simple_repeat 3 130 0 388 313 56 6 chr3 42433561 42433740 -175603418 - L1ME3 LINE L1 -200 5962 5775 195 100 0 0 chr3 42433798 42433828 -175603330 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 356 244 25 84 chr3 42434923 42435042 -175602116 + L2 LINE L2 3183 3294 -19 273 57 0 0 chr3 42435043 42435078 -175602080 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2011 117 0 0 chr3 42435081 42435363 -175601795 - AluSx SINE Alu -30 282 1 4162 216 63 9 chr3 42435974 42436428 -175600730 + L1MC2 LINE L1 1 429 -6135 1706 183 39 9 chr3 42436428 42436762 -175600396 - MER2 DNA MER2_type 0 344 1 4162 216 63 9 chr3 42436762 42438036 -175599122 + L1MC2 LINE L1 429 1837 -4727 * 5305 166 72 19 chr3 42438006 42439258 -175597900 + L1MC2 LINE L1 5416 6738 -24 383 301 78 54 chr3 42439438 42439770 -175597388 + L1ME2 LINE L1 3496 3835 -2729 707 234 81 38 chr3 42439789 42440126 -175597032 + L1ME2 LINE L1 5676 6023 -557 412 309 106 50 chr3 42440112 42440488 -175596670 + HAL1 LINE L1 3 399 -2108 * 2677 10 0 3 chr3 42440524 42440826 -175596332 + AluYa5 SINE Alu 1 301 -10 580 341 94 0 chr3 42440826 42441049 -175596109 - L2 LINE L2 -254 3059 2816 725 219 19 13 chr3 42441067 42441222 -175595936 - MLT1C LTR MaLR 0 467 312 424 194 5 161 chr3 42441247 42441433 -175595725 + L1ME2 LINE L1 6209 6365 -217 22 56 0 0 chr3 42441767 42441803 -175595355 + GC_rich Low_complexity Low_complexity 1 36 0 55 16 0 0 chr3 42441848 42441910 -175595248 + GC_rich Low_complexity Low_complexity 1 62 0 185 105 0 26 chr3 42442031 42442069 -175595089 + (CCCCCG)n Simple_repeat Simple_repeat 6 42 0 428 139 14 0 chr3 42442183 42442255 -175594903 - L1P LINE L1 -1170 4976 4904 1359 146 108 16 chr3 42442255 42442693 -175594465 - MER21A LTR ERV1 -364 499 1 2235 137 48 8 chr3 42442693 42442727 -175594431 - MER21A-int LTR ERV1 0 4191 4160 491 0 17 0 chr3 42442727 42442786 -175594372 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2235 137 48 8 chr3 42442786 42443123 -175594035 - MER21A-int LTR ERV1 -31 4160 3805 5121 206 6 12 chr3 42443124 42444232 -175592926 - L1 LINE L1 -1226 4920 3819 446 285 78 90 chr3 42444365 42444887 -175592271 - L1 LINE L1 -1225 4921 4406 21 156 0 0 chr3 42444911 42444956 -175592202 + AT_rich Low_complexity Low_complexity 1 45 0 307 240 40 0 chr3 42445081 42445156 -175592002 - L1MC5 LINE L1 -385 7576 7499 186 133 0 0 chr3 42448187 42448217 -175588941 + (GA)n Simple_repeat Simple_repeat 2 31 0 183 288 121 15 chr3 42448383 42448449 -175588709 - MIR SINE MIR -163 99 27 499 208 133 0 chr3 42448499 42448619 -175588539 + MIR SINE MIR 114 249 -13 631 189 0 0 chr3 42448978 42449089 -175588069 + L1ME LINE L1 5392 5502 -662 1685 320 49 33 chr3 42449665 42450497 -175586661 - L2 LINE L2 -222 3050 2171 396 281 96 7 chr3 42452114 42452260 -175584898 - L2 LINE L2 -3 3269 3111 824 250 81 0 chr3 42452404 42452640 -175584518 - MER90 LTR ERV1 0 614 360 540 314 19 39 chr3 42453799 42454006 -175583152 + MIR SINE MIR 16 218 -44 394 222 21 69 chr3 42454185 42454329 -175582829 - MIR3 SINE MIR -11 197 61 267 330 125 22 chr3 42454506 42454730 -175582428 + L2 LINE L2 3024 3270 -2 21 0 0 0 chr3 42455915 42455936 -175581222 + AT_rich Low_complexity Low_complexity 1 21 0 280 229 230 78 chr3 42457119 42457296 -175579862 - MIR SINE MIR -18 244 45 289 363 0 0 chr3 42457762 42457853 -175579305 + C-rich Low_complexity Low_complexity 1 91 0 292 226 39 50 chr3 42458073 42458254 -175578904 + (CCA)n Simple_repeat Simple_repeat 2 180 0 859 274 73 4 chr3 42458422 42458667 -175578491 - MIR SINE MIR 0 262 1 434 277 99 7 chr3 42458845 42458986 -175578172 - MIR SINE MIR -28 234 81 24 0 0 0 chr3 42459989 42460013 -175577145 + AT_rich Low_complexity Low_complexity 1 24 0 322 285 40 60 chr3 42460664 42460815 -175576343 + L1ME1 LINE L1 5988 6135 -31 1358 147 5 0 chr3 42460815 42461039 -175576119 + AluY SINE Alu 56 280 -31 34 55 0 0 chr3 42461043 42461098 -175576060 + GC_rich Low_complexity Low_complexity 1 55 0 * 171 42 0 26 chr3 42461070 42461378 -175575780 + GC_rich Low_complexity Low_complexity 1 300 0 50 75 0 0 chr3 42461380 42461486 -175575672 + GC_rich Low_complexity Low_complexity 1 106 0 2955 169 35 11 chr3 42461776 42462349 -175574809 - L1P LINE L1 -3728 2418 1832 2230 55 44 3 chr3 42462349 42462642 -175574516 + AluY SINE Alu 1 305 -6 26 30 0 0 chr3 42462671 42462704 -175574454 + AT_rich Low_complexity Low_complexity 1 33 0 1942 112 3 22 chr3 42462751 42463063 -175574095 + AluSx SINE Alu 1 306 -6 419 224 41 20 chr3 42463439 42463537 -175573621 + FRAM SINE Alu 63 162 -4 461 255 7 83 chr3 42463537 42463612 -175573546 - L1MC4 LINE L1 -1405 6590 6534 1699 146 38 0 chr3 42463612 42463900 -175573258 - AluJb SINE Alu -13 299 1 461 255 7 83 chr3 42463900 42463990 -175573168 - L1MC4 LINE L1 -1461 6534 6439 308 390 37 18 chr3 42464254 42464418 -175572740 - L2 LINE L2 -598 2716 2550 247 284 97 8 chr3 42465024 42465158 -175572000 + L2 LINE L2 1963 2108 -1206 1583 221 31 13 chr3 42465230 42465619 -175571539 + Charlie4a DNA MER1_type 38 433 -75 1972 106 11 7 chr3 42465620 42465903 -175571255 + AluSc SINE Alu 1 284 -25 425 313 91 5 chr3 42465957 42466155 -175571003 + L2 LINE L2 2171 2385 -929 502 238 14 56 chr3 42466502 42466610 -175570548 + L2 LINE L2 3134 3236 -36 1876 142 122 47 chr3 42466610 42467012 -175570146 - MSTB1 LTR MaLR 0 432 1 502 238 14 56 chr3 42467012 42467046 -175570112 + L2 LINE L2 3236 3270 -2 183 80 0 0 chr3 42467049 42467074 -175570084 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 217 316 13 25 chr3 42467203 42467282 -175569876 - L2 LINE L2 -198 3074 2997 210 327 0 0 chr3 42467974 42468029 -175569129 + G-rich Low_complexity Low_complexity 1 55 0 262 296 19 19 chr3 42468171 42468279 -175568879 + LTR16A1 LTR ERVL 350 457 0 419 192 0 0 chr3 42468318 42468396 -175568762 + L2 LINE L2 3195 3272 0 356 341 0 0 chr3 42469460 42469586 -175567572 + G-rich Low_complexity Low_complexity 1 126 0 21 36 0 0 chr3 42469591 42469619 -175567539 + GC_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 42469657 42469707 -175567451 + GC_rich Low_complexity Low_complexity 1 50 0 346 230 9 35 chr3 42469717 42469830 -175567328 + G-rich Low_complexity Low_complexity 2 111 0 203 309 0 0 chr3 42469873 42469928 -175567230 + GA-rich Low_complexity Low_complexity 3 57 0 260 282 113 8 chr3 42470277 42470401 -175566757 - L2 LINE L2 0 3272 3136 212 273 13 26 chr3 42470527 42470604 -175566554 + MIR3 SINE MIR 95 170 -38 447 52 0 0 chr3 42470756 42470814 -175566344 + (TC)n Simple_repeat Simple_repeat 2 59 0 285 29 0 0 chr3 42470814 42470848 -175566310 + (CA)n Simple_repeat Simple_repeat 2 35 0 2237 124 0 3 chr3 42471513 42471819 -175565339 + AluSx SINE Alu 1 305 -7 275 238 25 25 chr3 42471829 42471909 -175565249 + MIR SINE MIR 46 125 -83 419 195 0 11 chr3 42472831 42472918 -175564240 + L2 LINE L2 3224 3309 -4 30 0 0 0 chr3 42473213 42473243 -175563915 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 42473454 42473479 -175563679 + AT_rich Low_complexity Low_complexity 1 25 0 328 324 33 63 chr3 42474010 42474343 -175562815 - L2 LINE L2 -3 3310 2988 1077 153 40 22 chr3 42474507 42474735 -175562423 - L1MB7 LINE L1 -1 6183 5952 22 0 0 0 chr3 42475113 42475135 -175562023 + AT_rich Low_complexity Low_complexity 1 22 0 1695 179 3 17 chr3 42477448 42477739 -175559419 + AluJb SINE Alu 1 287 -25 6964 65 10 2 chr3 42477894 42479352 -175557806 + L1PA6 LINE L1 4691 6154 0 819 201 208 26 chr3 42480396 42480660 -175556498 + L1ME LINE L1 5371 5682 -488 550 222 0 0 chr3 42480662 42480761 -175556397 + MER33 DNA MER1_type 2 100 -224 2347 76 3 7 chr3 42480764 42481065 -175556093 + AluSg1 SINE Alu 1 300 -9 23 0 0 0 chr3 42481252 42481275 -175555883 + AT_rich Low_complexity Low_complexity 1 23 0 7723 159 27 23 chr3 42481375 42482959 -175554199 - L1P3 LINE L1 -4734 1141 2 475 317 54 5 chr3 42483202 42483423 -175553735 - MIR SINE MIR -8 254 23 243 152 0 0 chr3 42483599 42483645 -175553513 + C-rich Low_complexity Low_complexity 1 46 0 415 335 9 28 chr3 42483666 42483936 -175553222 + C-rich Low_complexity Low_complexity 1 264 0 231 203 0 0 chr3 42483969 42484033 -175553125 + C-rich Low_complexity Low_complexity 1 64 0 1806 111 8 0 chr3 42484257 42484510 -175552648 - AluSp SINE Alu -58 255 1 868 199 39 2 chr3 42484673 42484879 -175552279 - MIR SINE MIR -21 241 31 2174 111 3 0 chr3 42484881 42485178 -175551980 - AluSx SINE Alu -14 298 1 278 267 10 30 chr3 42485907 42486008 -175551150 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 613 285 43 40 chr3 42486089 42486342 -175550816 + MIR SINE MIR 9 262 0 180 0 0 0 chr3 42486495 42486515 -175550643 + (T)n Simple_repeat Simple_repeat 1 20 0 2583 53 0 0 chr3 42486981 42487280 -175549878 - AluY SINE Alu -11 300 2 23 33 0 0 chr3 42487927 42487957 -175549201 + AT_rich Low_complexity Low_complexity 1 30 0 1610 168 88 3 chr3 42489800 42490097 -175547061 - MSTB LTR MaLR -104 322 1 1056 243 145 33 chr3 42490302 42490730 -175546428 - MLT1G1 LTR MaLR 0 595 120 280 354 25 6 chr3 42490855 42491016 -175546142 + C-rich Low_complexity Low_complexity 3 166 0 289 251 5 87 chr3 42491080 42491275 -175545883 + C-rich Low_complexity Low_complexity 2 180 0 539 250 14 7 chr3 42491512 42491652 -175545506 + L1M1 LINE L1 552 692 -6873 620 270 37 11 chr3 42491724 42491913 -175545245 + MIR SINE MIR 25 218 -44 229 198 17 52 chr3 42492726 42492842 -175544316 + (CGGGG)n Simple_repeat Simple_repeat 3 114 0 * 269 264 11 22 chr3 42492774 42492956 -175544202 + (CGGG)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr3 42493840 42493863 -175543295 + AT_rich Low_complexity Low_complexity 1 23 0 8813 92 6 1 chr3 42494538 42495779 -175541379 - L1P LINE L1 -2503 3643 2396 21 0 0 0 chr3 42496659 42496680 -175540478 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 42497967 42497988 -175539170 + (CA)n Simple_repeat Simple_repeat 2 22 0 484 126 103 0 chr3 42497992 42498079 -175539079 - LTR37B LTR ERV1 -25 443 348 332 261 53 93 chr3 42498079 42498305 -175538853 + L1MC4 LINE L1 7755 7971 -71 838 245 78 96 chr3 42498370 42498800 -175538358 - L1MC4a LINE L1 -1725 6083 5662 1509 207 81 6 chr3 42498800 42499148 -175538010 - MLT1A2 LTR MaLR 0 374 1 838 245 78 96 chr3 42499148 42499228 -175537930 - L1MC4a LINE L1 -2146 5662 5582 447 133 13 13 chr3 42500140 42500215 -175536943 - FLAM SINE Alu -18 125 51 801 142 25 0 chr3 42500241 42500361 -175536797 - FLAM_C SINE Alu -20 123 1 1444 195 21 17 chr3 42501347 42501634 -175535524 - AluJo SINE Alu -24 288 1 483 71 61 0 chr3 42504632 42504730 -175532428 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 1031 149 30 1 chr3 42504792 42505086 -175532072 - MER2 DNA MER2_type -6 339 2 271 320 64 16 chr3 42505420 42505545 -175531613 + MIR3 SINE MIR 24 154 -54 384 195 22 54 chr3 42506629 42506814 -175530344 + G-rich Low_complexity Low_complexity 2 180 0 30 45 0 0 chr3 42506814 42506858 -175530300 + GC_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 42506930 42506960 -175530198 + GC_rich Low_complexity Low_complexity 1 30 0 30 83 0 0 chr3 42506989 42507061 -175530097 + GC_rich Low_complexity Low_complexity 1 72 0 3120 49 10 0 chr3 42507585 42507973 -175529185 - L1PA4 LINE L1 0 6155 5764 236 204 19 39 chr3 42508089 42508192 -175528966 + C-rich Low_complexity Low_complexity 1 101 0 486 308 12 23 chr3 42508247 42508419 -175528739 + C-rich Low_complexity Low_complexity 3 172 0 240 309 0 68 chr3 42508450 42508641 -175528517 + CT-rich Low_complexity Low_complexity 2 179 0 674 230 106 38 chr3 42510641 42510980 -175526178 + HAL1 LINE L1 1180 1541 -966 2104 125 3 13 chr3 42510982 42511293 -175525865 + AluSc SINE Alu 1 308 -1 474 297 169 38 chr3 42511341 42511786 -175525372 + MLT1J LTR MaLR 1 503 -8 1348 221 59 27 chr3 42514312 42514683 -175522475 - MLT1D LTR MaLR -3 502 120 807 284 94 54 chr3 42515116 42515691 -175521467 + L2 LINE L2 2709 3313 0 214 316 112 0 chr3 42515815 42515913 -175521245 - L2 LINE L2 -469 2845 2737 1434 221 64 3 chr3 42515918 42516273 -175520885 - L1MC4 LINE L1 -158 7650 7383 1063 218 3 71 chr3 42516396 42516706 -175520452 - L1ME2 LINE L1 -5 6161 5867 717 247 71 24 chr3 42516914 42517250 -175519908 + HAL1 LINE L1 796 1147 -1360 247 257 17 21 chr3 42517252 42517401 -175519757 + G-rich Low_complexity Low_complexity 4 236 0 30 59 0 0 chr3 42518643 42518694 -175518464 + GC_rich Low_complexity Low_complexity 1 51 0 1226 154 28 5 chr3 42520778 42520992 -175516166 - MER20 DNA MER1_type 0 219 1 26 0 0 0 chr3 42521476 42521502 -175515656 + AT_rich Low_complexity Low_complexity 1 26 0 469 264 16 23 chr3 42521670 42521799 -175515359 - MIR SINE MIR -103 159 32 189 107 0 0 chr3 42522153 42522181 -175514977 + (A)n Simple_repeat Simple_repeat 1 28 0 41 77 0 23 chr3 42522742 42522872 -175514286 + GC_rich Low_complexity Low_complexity 1 127 0 300 302 23 39 chr3 42523262 42523391 -175513767 + L2 LINE L2 3116 3242 -30 195 267 47 23 chr3 42524506 42524592 -175512566 + MIR3 SINE MIR 115 202 -6 783 299 100 18 chr3 42525369 42525710 -175511448 - MLT1H LTR MaLR -13 536 168 1529 175 25 35 chr3 42525844 42526129 -175511029 + AluJo SINE Alu 27 308 -4 2455 133 25 7 chr3 42526129 42526564 -175510594 + L1MB3 LINE L1 5557 5999 -184 1194 96 0 0 chr3 42526692 42526849 -175510309 + (C)n Simple_repeat Simple_repeat 1 157 0 280 137 34 60 chr3 42526856 42526973 -175510185 + (CGGG)n Simple_repeat Simple_repeat 4 117 0 * 371 188 22 39 chr3 42526939 42527120 -175510038 + (CGCGG)n Simple_repeat Simple_repeat 2 179 0 235 226 23 23 chr3 42527139 42527272 -175509886 + (CCCCG)n Simple_repeat Simple_repeat 4 136 0 366 260 84 32 chr3 42527701 42527855 -175509303 - HsTC2 DNA Tc2 -3 1895 16 31 92 0 0 chr3 42527985 42528072 -175509086 + GC_rich Low_complexity Low_complexity 1 87 0 23 54 0 0 chr3 42528092 42528129 -175509029 + GC_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr3 42528173 42528215 -175508943 + GC_rich Low_complexity Low_complexity 1 42 0 240 35 0 0 chr3 42528333 42528362 -175508796 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 989 76 7 0 chr3 42528723 42528867 -175508291 - L1MB4 LINE L1 0 6180 6036 186 359 47 19 chr3 42528869 42528975 -175508183 - L2 LINE L2 -5 3308 3200 707 276 0 0 chr3 42529192 42529337 -175507821 - MER63A DNA MER1_type -11 199 55 246 196 232 0 chr3 42530236 42530292 -175506866 + MER58 DNA MER1_type 1 69 -2351 1983 171 0 0 chr3 42531384 42531688 -175505470 - AluJb SINE Alu -8 304 1 88 35 0 0 chr3 42531889 42532005 -175505153 + GC_rich Low_complexity Low_complexity 1 116 0 349 234 0 0 chr3 42532029 42532140 -175505018 + G-rich Low_complexity Low_complexity 1 111 0 1037 209 119 4 chr3 42583589 42583857 -175453301 + MLT1E3 LTR MaLR 326 624 0 26 0 0 0 chr3 42585617 42585643 -175451515 + AT_rich Low_complexity Low_complexity 1 26 0 1542 192 19 6 chr3 42585821 42586134 -175451024 - MLT1A1 LTR MaLR 0 365 49 347 280 125 22 chr3 42586241 42586693 -175450465 + HAL1 LINE L1 1344 1896 -611 384 216 10 10 chr3 42586994 42587091 -175450067 + MLT1J2 LTR MaLR 79 175 -275 285 193 14 14 chr3 42587185 42587267 -175449891 + MLT1J2 LTR MaLR 309 428 -19 710 245 19 39 chr3 42587293 42587501 -175449657 + MIR SINE MIR 1 204 -58 861 174 78 6 chr3 42587540 42587707 -175449451 - MSTD LTR MaLR 0 396 218 626 217 102 66 chr3 42587862 42588106 -175449052 - MSTD LTR MaLR -138 258 6 322 231 111 60 chr3 42589458 42589575 -175447583 + L2 LINE L2 3185 3307 -6 3469 172 10 30 chr3 42590887 42591590 -175445568 + L1PB4 LINE L1 5467 6155 -1 243 262 16 0 chr3 42591724 42591785 -175445373 + L2 LINE L2 2990 3051 -221 25 31 0 0 chr3 42592296 42592328 -175444830 + AT_rich Low_complexity Low_complexity 1 32 0 264 253 200 0 chr3 42592966 42593061 -175444097 - MIR SINE MIR -40 222 109 335 292 73 22 chr3 42593128 42593265 -175443893 + MIR3 SINE MIR 3 146 -62 221 239 0 14 chr3 42593390 42593461 -175443697 + CT-rich Low_complexity Low_complexity 4 73 0 420 281 90 9 chr3 42593720 42594132 -175443026 + L1ME LINE L1 5066 5513 -649 759 200 0 7 chr3 42594538 42594673 -175442485 - AluJo SINE Alu -178 134 1 10034 131 5 11 chr3 42595635 42597244 -175439914 + L1PA12 LINE L1 1426 3024 -4557 721 92 17 0 chr3 42598321 42598441 -175438717 + (GA)n Simple_repeat Simple_repeat 2 123 0 330 182 26 26 chr3 42598828 42598905 -175438253 + MLT2F LTR ERVL 587 663 0 269 250 22 22 chr3 42599019 42599111 -175438047 + (CAT)n Simple_repeat Simple_repeat 2 93 0 183 387 0 0 chr3 42599132 42599194 -175437964 - MIR SINE MIR -115 93 32 228 306 22 82 chr3 42599207 42599390 -175437768 + L2 LINE L2 688 859 -2455 2088 139 0 16 chr3 42599530 42599833 -175437325 - AluSx SINE Alu -14 298 1 2265 117 0 0 chr3 42600315 42600623 -175436535 - AluSx SINE Alu -4 308 1 1251 218 17 9 chr3 42600748 42601096 -175436062 - L1M4 LINE L1 -946 5200 4850 8623 62 1 3 chr3 42601097 42602237 -175434921 + L1P LINE L1 1 1138 -5008 7491 35 1 0 chr3 42602337 42603753 -175433405 + L1PA4 LINE L1 4736 6152 -3 24 0 0 0 chr3 42603753 42603777 -175433381 + AT_rich Low_complexity Low_complexity 1 24 0 16515 36 1 0 chr3 42604377 42606500 -175430658 - L1P LINE L1 -1397 4749 2625 20196 83 12 0 chr3 42606600 42609463 -175427695 + L1P LINE L1 100 2996 -3150 1895 139 29 0 chr3 42609630 42609940 -175427218 - AluSx SINE Alu 0 318 1 300 313 0 31 chr3 42610022 42610118 -175427040 + L2 LINE L2 3195 3287 -26 257 231 0 0 chr3 42610584 42610649 -175426509 - L1ME4a LINE L1 -4 6117 6053 204 287 319 0 chr3 42611098 42611192 -175425966 - L2 LINE L2 0 3272 3149 1847 151 3 11 chr3 42611894 42612178 -175424980 + AluJo SINE Alu 1 282 -30 32 0 0 0 chr3 42613137 42613169 -175423989 + AT_rich Low_complexity Low_complexity 1 32 0 2058 93 29 11 chr3 42613316 42613621 -175423537 + AluSp SINE Alu 1 310 0 22 56 0 0 chr3 42613652 42613688 -175423470 + AT_rich Low_complexity Low_complexity 1 36 0 2003 154 28 6 chr3 42613786 42614143 -175423015 + MLT1A1 LTR MaLR 1 365 0 29 28 0 0 chr3 42614671 42614707 -175422451 + AT_rich Low_complexity Low_complexity 1 36 0 248 258 16 0 chr3 42614949 42615011 -175422147 - L1ME LINE L1 -492 5629 5567 1228 249 101 8 chr3 42615189 42615554 -175421604 - LTR16A LTR ERVL 0 450 52 2271 103 0 0 chr3 42617315 42617616 -175419542 - AluSg SINE Alu -9 301 1 356 315 63 0 chr3 42618378 42618521 -175418637 - MIR3 SINE MIR -12 196 45 913 305 53 8 chr3 42618601 42619237 -175417921 - L1MEc LINE L1 -2982 3147 2483 1047 187 42 0 chr3 42619341 42619555 -175417603 + MLT1A1 LTR MaLR 143 365 0 303 290 45 52 chr3 42619562 42619852 -175417306 - L1MEc LINE L1 -3749 2380 2093 2336 74 40 0 chr3 42619881 42620180 -175416978 - AluY SINE Alu 0 311 1 1727 148 7 49 chr3 42620440 42620599 -175416559 - AluJo SINE Alu -21 291 127 247 24 24 24 chr3 42620599 42620640 -175416518 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1908 151 11 0 chr3 42620640 42620919 -175416239 - AluJb SINE Alu -30 282 1 1727 148 7 49 chr3 42620919 42621062 -175416096 - AluJo SINE Alu -183 129 1 613 326 91 34 chr3 42621173 42621703 -175415455 - L1MEc LINE L1 -4585 1725 1166 265 281 84 86 chr3 42621725 42622507 -175414651 - L1MEc LINE L1 -5100 1019 239 485 276 119 25 chr3 42622947 42623309 -175413849 + L1ME LINE L1 5405 5800 -321 22 56 0 0 chr3 42623352 42623388 -175413770 + AT_rich Low_complexity Low_complexity 1 36 0 286 238 168 19 chr3 42623567 42623781 -175413377 + L1ME4a LINE L1 5765 6010 -111 976 305 125 54 chr3 42626320 42626925 -175410233 - L1ME LINE L1 -803 5343 4783 198 0 0 0 chr3 42626925 42626947 -175410211 + (TA)n Simple_repeat Simple_repeat 2 23 0 976 305 125 54 chr3 42626947 42627668 -175409490 - L1ME LINE L1 -1363 4783 4060 249 255 0 31 chr3 42627723 42627821 -175409337 - L1ME LINE L1 -2192 3954 3860 816 172 0 0 chr3 42627862 42627990 -175409168 - FLAM_A SINE Alu -5 128 1 1139 208 61 20 chr3 42628205 42628551 -175408607 - L1MB7 LINE L1 0 6995 6636 1484 219 0 0 chr3 42628556 42628867 -175408291 - L1MB7 LINE L1 -467 6510 6200 1931 199 8 3 chr3 42628874 42629265 -175407893 + MER70B LTR ERVL 186 578 0 5705 236 45 45 chr3 42629269 42630559 -175406599 - L1MB7 LINE L1 -1951 5006 3718 10835 85 5 29 chr3 42630559 42632207 -175404951 + L1PA7 LINE L1 3836 5460 -694 1587 124 26 4 chr3 42632207 42632433 -175404725 + AluSc SINE Alu 1 231 -78 10835 85 5 29 chr3 42632433 42633109 -175404049 + L1PA7 LINE L1 5460 6151 -3 5705 236 45 45 chr3 42633109 42634501 -175402657 - L1MB7 LINE L1 -3239 3718 2361 24 0 0 0 chr3 42634515 42634539 -175402619 + AT_rich Low_complexity Low_complexity 1 24 0 1604 259 69 19 chr3 42634576 42635371 -175401787 - L1MB7 LINE L1 -4833 2022 1188 1935 139 17 0 chr3 42635383 42635678 -175401480 - AluSx SINE Alu -12 300 1 379 275 46 34 chr3 42636245 42636463 -175400695 - L1MB7 LINE L1 -6314 541 11 208 244 0 0 chr3 42639446 42639491 -175397667 + (CA)n Simple_repeat Simple_repeat 1 45 0 600 254 67 12 chr3 42641184 42641349 -175395809 - MIR SINE MIR -7 255 82 1385 185 120 0 chr3 42641757 42642016 -175395142 - AluJb SINE Alu -22 290 1 325 288 48 0 chr3 42643621 42643746 -175393412 + MIR SINE MIR 121 251 -11 324 355 87 7 chr3 42646068 42646206 -175390952 - L2 LINE L2 0 3272 3124 459 0 0 0 chr3 42646299 42646350 -175390808 + (TG)n Simple_repeat Simple_repeat 2 52 0 260 83 0 0 chr3 42646656 42646692 -175390466 - Alu SINE Alu -266 36 1 891 151 22 22 chr3 42646745 42646930 -175390228 + MER53 DNA DNA 4 188 -1 200 135 27 0 chr3 42647250 42647287 -175389871 + (TA)n Simple_repeat Simple_repeat 2 39 0 789 233 50 80 chr3 42647293 42647593 -175389565 - L2 LINE L2 0 3313 3023 21 0 0 0 chr3 42647593 42647614 -175389544 + AT_rich Low_complexity Low_complexity 1 21 0 1153 151 9 24 chr3 42647703 42647915 -175389243 - SVA Other Other -746 640 432 1785 298 58 67 chr3 42647915 42648765 -175388393 - L2 LINE L2 -268 3045 2206 497 245 28 14 chr3 42648768 42648911 -175388247 + LTR16A1 LTR ERVL 12 156 -301 627 253 50 10 chr3 42648968 42649166 -175387992 + LTR16A1 LTR ERVL 248 453 -4 254 186 0 0 chr3 42649819 42649878 -175387280 - L1MA5A LINE L1 0 6297 6239 37 0 0 0 chr3 42651114 42651151 -175386007 + AT_rich Low_complexity Low_complexity 1 37 0 38647 70 4 2 chr3 42651179 42657315 -175379843 - L1PA5 LINE L1 -2 6152 3 2953 115 0 2 chr3 42657314 42657776 -175379382 - L1MA5A LINE L1 -46 6251 5791 * 4385 166 3 32 chr3 42657780 42658713 -175378445 + L1 LINE L1 4252 5157 -989 1382 209 59 30 chr3 42658721 42659147 -175378011 - L1ME3 LINE L1 -1 6161 5724 233 29 29 0 chr3 42659267 42659301 -175377857 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 10557 35 1 1 chr3 42659304 42661354 -175375804 - L1PA3 LINE L1 -3 6152 4102 4954 63 1 0 chr3 42661363 42662014 -175375144 - L1P LINE L1 -5486 660 9 343 359 35 7 chr3 42662026 42662168 -175374990 - MIR3 SINE MIR -62 146 1 318 264 13 14 chr3 42663179 42663268 -175373890 - MIR SINE MIR -97 111 30 3900 197 11 36 chr3 42663935 42664156 -175373002 - L1MB4 LINE L1 -1 6179 5954 2121 70 0 0 chr3 42664156 42664413 -175372745 - AluY SINE Alu -11 300 44 1587 203 0 37 chr3 42664413 42664707 -175372451 - AluJb SINE Alu -27 285 1 3900 197 11 36 chr3 42664707 42665430 -175371728 - L1MB4 LINE L1 -224 5956 5258 32787 48 1 0 chr3 42665552 42671683 -175365475 + L1PA4 LINE L1 14 6148 -7 12717 119 15 3 chr3 42671782 42673800 -175363358 - Tigger1 DNA MER2_type 0 2418 377 471 311 106 17 chr3 42674248 42674428 -175362730 - MIR SINE MIR -44 218 23 455 286 53 8 chr3 42674755 42674888 -175362270 + MIR SINE MIR 36 174 -88 317 342 87 5 chr3 42675940 42676124 -175361034 + L2 LINE L2 2538 2736 -578 1176 247 60 8 chr3 42676171 42676555 -175360603 - LTR16C LTR ERVL -1 490 87 387 398 91 24 chr3 42676647 42677064 -175360094 + L2 LINE L2 2804 3248 -24 234 116 0 0 chr3 42677310 42677353 -175359805 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 324 14 28 chr3 42677379 42677521 -175359637 + GA-rich Low_complexity Low_complexity 5 144 0 1068 211 175 14 chr3 42678307 42678751 -175358407 + LTR50 LTR ERVL 1 372 -423 501 226 9 17 chr3 42678751 42678866 -175358292 - MER81 DNA DNA 0 114 1 1068 211 175 14 chr3 42678866 42678999 -175358159 + LTR50 LTR ERVL 372 787 -8 292 279 180 18 chr3 42679230 42679341 -175357817 - MIR SINE MIR -85 177 49 260 239 65 33 chr3 42680091 42680183 -175356975 + MIR SINE MIR 90 184 -78 1318 239 72 21 chr3 42680352 42680683 -175356475 - MLT1E LTR MaLR -40 553 206 1767 181 20 0 chr3 42680856 42681149 -175356009 + AluJo SINE Alu 1 299 -13 431 186 159 28 chr3 42681180 42681325 -175355833 - MLT1E LTR MaLR -385 164 1 273 254 16 0 chr3 42682221 42682284 -175354874 + MIR SINE MIR 89 152 -56 408 247 50 85 chr3 42683163 42683368 -175353790 - MIR SINE MIR -62 146 3 196 300 8 75 chr3 42683368 42683476 -175353682 - L2 LINE L2 -629 2685 2586 212 345 83 36 chr3 42683470 42683667 -175353491 + L2 LINE L2 2016 2229 -1085 2293 83 0 7 chr3 42683667 42683967 -175353191 - AluSg SINE Alu -12 298 1 212 345 83 36 chr3 42683967 42684021 -175353137 + L2 LINE L2 2229 2279 -1035 1009 315 50 38 chr3 42684021 42684542 -175352616 + L2 LINE L2 1531 2057 -1257 225 308 48 39 chr3 42684578 42684682 -175352476 + L2 LINE L2 2212 2316 -998 1648 136 4 19 chr3 42684792 42685049 -175352109 - AluSx SINE Alu -3 309 57 235 235 0 87 chr3 42685396 42685511 -175351647 + T-rich Low_complexity Low_complexity 2 106 0 415 273 246 8 chr3 42685533 42685797 -175351361 + LTR16A1 LTR ERVL 5 331 -126 2019 102 13 3 chr3 42685835 42686138 -175351020 - L1MA3 LINE L1 -7 6298 5993 5582 194 23 10 chr3 42686138 42687532 -175349626 - L1M1 LINE L1 -2579 4986 3572 35918 82 12 11 chr3 42687546 42691325 -175345833 - L1PA6 LINE L1 -2 6152 2380 2941 135 49 6 chr3 42691325 42691813 -175345345 + MER9 LTR ERVK 1 509 -2 35918 82 12 11 chr3 42691813 42694185 -175342973 - L1PA6 LINE L1 -3774 2380 12 6756 113 23 16 chr3 42694197 42695406 -175341752 - L1M1 LINE L1 -3986 3579 2363 * 8733 154 18 10 chr3 42695405 42696889 -175340269 - L1M1 LINE L1 -6053 1512 18 589 232 49 0 chr3 42696898 42697040 -175340118 + LTR16A1 LTR ERVL 309 457 0 341 187 41 140 chr3 42697664 42697835 -175339323 + MER103 DNA DNA 1 154 -12 293 200 0 0 chr3 42697942 42697997 -175339161 - L1PA15-16 LINE L1 -3905 2944 2890 8289 135 60 6 chr3 42698004 42698588 -175338570 + L1PA11 LINE L1 3979 4530 -1644 2156 103 14 3 chr3 42698588 42698879 -175338279 + AluY SINE Alu 1 294 -17 8289 135 60 6 chr3 42698879 42700442 -175336716 + L1PA11 LINE L1 4530 6169 -5 1884 223 32 34 chr3 42700514 42701020 -175336138 - MLT1D LTR MaLR 0 505 1 290 350 43 43 chr3 42701754 42701940 -175335218 + MIR3 SINE MIR 12 197 -11 480 35 0 0 chr3 42702863 42702921 -175334237 + (CAA)n Simple_repeat Simple_repeat 2 59 0 379 276 38 9 chr3 42703273 42703378 -175333780 + MIR SINE MIR 32 139 -123 369 309 75 16 chr3 42704585 42704773 -175332385 + MIR SINE MIR 64 262 0 1258 230 64 4 chr3 42704997 42705282 -175331876 + AluJo SINE Alu 1 301 0 8401 209 46 17 chr3 42705433 42708780 -175328378 + L1PB4 LINE L1 2621 6078 -78 2050 67 63 8 chr3 42708780 42709081 -175328077 + AluY SINE Alu 1 316 0 8401 209 46 17 chr3 42709081 42709161 -175327997 + L1PB4 LINE L1 6078 6154 -2 249 83 0 0 chr3 42709247 42709283 -175327875 + (A)n Simple_repeat Simple_repeat 1 36 0 240 59 0 0 chr3 42709330 42709364 -175327794 + (TG)n Simple_repeat Simple_repeat 1 34 0 480 309 39 52 chr3 42709553 42709783 -175327375 - MIR SINE MIR -4 258 32 1052 249 81 38 chr3 42710514 42711011 -175326147 - HAL1b LINE L1 -468 880 363 452 321 71 45 chr3 42711035 42711346 -175325812 - HAL1b LINE L1 -1027 321 3 23 54 0 0 chr3 42711478 42711515 -175325643 + AT_rich Low_complexity Low_complexity 1 37 0 978 137 20 85 chr3 42711515 42711763 -175325395 - L1MB2 LINE L1 -2 6169 5938 922 158 59 34 chr3 42711863 42712073 -175325085 + THE1C LTR MaLR 180 375 0 3271 167 37 19 chr3 42712073 42712980 -175324178 - L1MB2 LINE L1 -250 5933 5019 400 293 30 23 chr3 42713804 42713937 -175323221 + MIR SINE MIR 24 157 -105 * 474 252 150 7 chr3 42713930 42714077 -175323081 - MIR SINE MIR 0 262 95 226 254 16 0 chr3 42714149 42714212 -175322946 + MIR SINE MIR 154 217 -45 2245 144 48 26 chr3 42714229 42714645 -175322513 + MSTB1 LTR MaLR 8 432 0 2258 178 96 15 chr3 42715288 42715817 -175321341 + LTR49 LTR ERV1 1 572 -23 1605 185 158 44 chr3 42716016 42716497 -175320661 + LTR10A LTR ERV1 13 548 -61 1174 213 49 31 chr3 42717919 42718512 -175318646 + MLT1E1 LTR MaLR 2 593 0 408 208 169 82 chr3 42719122 42719305 -175317853 + MIR SINE MIR 63 261 -1 298 301 49 35 chr3 42719319 42719462 -175317696 - L2 LINE L2 -213 3059 2915 434 255 87 13 chr3 42720751 42720900 -175316258 + L2 LINE L2 3154 3313 0 288 0 0 0 chr3 42721658 42721690 -175315468 + (T)n Simple_repeat Simple_repeat 1 32 0 269 246 0 0 chr3 42722207 42722268 -175314890 + MIR SINE MIR 58 118 -144 239 275 0 58 chr3 42722419 42722488 -175314670 + L2 LINE L2 3207 3271 -1 185 292 62 31 chr3 42723165 42723261 -175313897 + L2 LINE L2 1840 1938 -1376 500 214 104 32 chr3 42723338 42723492 -175313666 + MLT1J2 LTR MaLR 281 445 -5 197 390 11 0 chr3 42724965 42725060 -175312098 - MIR SINE MIR -79 183 88 235 276 0 41 chr3 42725387 42725485 -175311673 + MARNA DNA Mariner 141 234 -352 325 141 0 16 chr3 42726148 42726212 -175310946 - MER116 DNA Mariner -17 63 1 2147 231 83 0 chr3 42726414 42726947 -175310211 + MLT1G LTR MaLR 14 590 0 40 21 0 0 chr3 42727290 42727337 -175309821 + AT_rich Low_complexity Low_complexity 1 47 0 1036 158 100 32 chr3 42727337 42727527 -175309631 - AluJb SINE Alu -25 287 85 335 249 83 126 chr3 42727536 42727957 -175309201 - L1ME4a LINE L1 -12 6109 5707 195 129 0 0 chr3 42728086 42728117 -175309041 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr3 42728491 42728512 -175308646 + (T)n Simple_repeat Simple_repeat 1 21 0 392 322 166 19 chr3 42728885 42729090 -175308068 + MIR SINE MIR 22 256 -6 21 57 0 0 chr3 42729112 42729147 -175308011 + AT_rich Low_complexity Low_complexity 1 35 0 1879 54 4 0 chr3 42729147 42729386 -175307772 - L1PA7 LINE L1 0 6154 5915 1085 138 12 0 chr3 42729486 42729646 -175307512 + AluSq SINE Alu 143 304 -9 2522 214 30 22 chr3 42729652 42730324 -175306834 + L1ME2 LINE L1 5487 6163 -1 589 290 62 9 chr3 42731051 42731275 -175305883 + LTR16C LTR ERVL 253 488 -3 316 331 44 52 chr3 42732108 42732310 -175304848 + MIR SINE MIR 6 209 -53 1253 212 90 20 chr3 42732315 42732759 -175304399 - Charlie4a DNA MER1_type 0 508 34 542 221 33 0 chr3 42733203 42733325 -175303833 - MER63A DNA MER1_type -33 177 52 456 182 40 0 chr3 42733745 42733844 -175303314 - MER58 DNA MER1_type 0 2420 2318 246 305 9 67 chr3 42733841 42733946 -175303212 - MER58 DNA MER1_type -242 99 1 * 370 211 84 0 chr3 42734155 42734250 -175302908 - MER103 DNA DNA -51 115 13 1220 149 22 26 chr3 42734672 42734900 -175302258 - L1PA8 LINE L1 0 6172 5946 1075 224 204 2 chr3 42735272 42735853 -175301305 - LTR50 LTR ERVL 0 795 4 228 280 27 27 chr3 42736476 42736551 -175300607 + MIR SINE MIR 48 122 -140 623 305 111 4 chr3 42737001 42737227 -175299931 - MIR SINE MIR -10 252 3 241 330 198 30 chr3 42737300 42737497 -175299661 - MIR SINE MIR -15 247 18 2492 66 0 3 chr3 42738129 42738434 -175298724 + AluY SINE Alu 1 304 -7 285 128 0 0 chr3 42739156 42739203 -175297955 + (CCCA)n Simple_repeat Simple_repeat 2 48 0 2162 117 10 0 chr3 42739272 42739572 -175297586 - AluSq SINE Alu -10 303 1 231 321 46 84 chr3 42739635 42739766 -175297392 - L2 LINE L2 0 3272 3147 1243 250 22 112 chr3 42739779 42740315 -175296843 + L2 LINE L2 2824 3311 -2 321 267 111 0 chr3 42741906 42741996 -175295162 + L2 LINE L2 3163 3262 -10 192 77 0 0 chr3 42741998 42742024 -175295134 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 252 371 72 42 chr3 42742039 42742276 -175294882 + L2 LINE L2 3025 3268 -4 284 300 146 18 chr3 42742498 42742828 -175294330 - L1ME LINE L1 -253 5868 5497 591 267 30 79 chr3 42744852 42745155 -175292003 + LTR16A1 LTR ERVL 166 453 -4 328 218 103 0 chr3 42745166 42745244 -175291914 - MIR SINE MIR -70 192 107 688 71 0 0 chr3 42745407 42745505 -175291653 + AluY SINE Alu 214 311 0 1836 27 0 0 chr3 42745505 42745729 -175291429 - L1P3 LINE L1 -455 5699 5476 1717 101 0 0 chr3 42745739 42745967 -175291191 - AluSg SINE Alu -82 228 1 1409 226 36 10 chr3 42746364 42746489 -175290669 + AluJo SINE Alu 1 121 -191 240 35 0 0 chr3 42746489 42746518 -175290640 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 1409 226 36 10 chr3 42746518 42746693 -175290465 + AluJo SINE Alu 121 309 -3 1999 145 17 26 chr3 42747427 42747778 -175289380 - MER7A DNA MER2_type 0 346 1 372 301 53 60 chr3 42748161 42748399 -175288759 - MIR SINE MIR -6 256 5 180 381 36 0 chr3 42749727 42749811 -175287347 - L2 LINE L2 -1 3312 3226 978 204 0 32 chr3 42750744 42750960 -175286198 - MER3 DNA MER1_type 0 209 1 1065 121 0 0 chr3 42751177 42751342 -175285816 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 414 239 133 37 chr3 42751629 42751817 -175285341 - MIR SINE MIR -11 251 46 866 299 45 27 chr3 42752692 42753134 -175284024 - L1ME3A LINE L1 -222 6446 5997 762 125 0 0 chr3 42753171 42753275 -175283883 + L1PA8A LINE L1 6010 6113 -18 252 0 0 0 chr3 42753284 42753312 -175283846 + (TA)n Simple_repeat Simple_repeat 2 29 0 3579 233 64 14 chr3 42753313 42754464 -175282694 - L1ME3A LINE L1 -1287 5357 4149 2509 231 33 17 chr3 42754486 42755266 -175281892 - L1ME3A LINE L1 -4835 1707 915 1063 179 39 5 chr3 42755761 42755968 -175281190 + MER20 DNA MER1_type 1 214 -5 1215 152 31 121 chr3 42755990 42756371 -175280787 - MLT1A1 LTR MaLR 0 365 19 1964 65 0 16 chr3 42756610 42756928 -175280230 - AluY SINE Alu 0 352 39 23 33 0 0 chr3 42757255 42757285 -175279873 + AT_rich Low_complexity Low_complexity 1 30 0 503 46 0 0 chr3 42758321 42758386 -175278772 - L1PA8A LINE L1 -265 5866 5802 23 0 0 0 chr3 42758627 42758650 -175278508 + AT_rich Low_complexity Low_complexity 1 23 0 6023 89 3 12 chr3 42758650 42759945 -175277213 - L1PA8 LINE L1 -8 6880 5559 13373 102 102 11 chr3 42759945 42762229 -175274929 - L1PA8 LINE L1 -4207 2656 164 423 170 80 20 chr3 42764624 42764724 -175272434 - MER5C DNA MER1_type -5 319 214 600 203 15 0 chr3 42764742 42764875 -175272283 + L1MD3 LINE L1 7842 7976 -19 617 202 138 11 chr3 42764882 42765070 -175272088 - MER5C DNA MER1_type -92 232 21 195 332 32 86 chr3 42765392 42765579 -175271579 - L2 LINE L2 -140 3132 2956 1140 184 88 94 chr3 42765967 42766059 -175271099 + MLT1C LTR MaLR 10 101 -366 2325 84 3 37 chr3 42766059 42766381 -175270777 + AluY SINE Alu 1 311 0 1140 184 88 94 chr3 42766381 42766745 -175270413 + MLT1C LTR MaLR 101 463 -4 228 135 0 0 chr3 42767016 42767053 -175270105 + (TCC)n Simple_repeat Simple_repeat 3 39 0 236 191 63 16 chr3 42767572 42767635 -175269523 - MLT1K LTR MaLR -23 565 500 293 175 0 0 chr3 42768189 42768246 -175268912 - MLT2B1 LTR ERVL 0 520 464 213 139 0 0 chr3 42768260 42768303 -175268855 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 1265 187 159 89 chr3 42768303 42768731 -175268427 - MLT2B1 LTR ERVL -62 458 1 430 256 48 62 chr3 42769285 42769450 -175267708 + MIR3 SINE MIR 43 207 -1 304 296 96 0 chr3 42770176 42770291 -175266867 + L1ME4a LINE L1 5975 6100 -21 256 267 33 8 chr3 42771250 42771370 -175265788 - LTR16A1 LTR ERVL -26 431 309 2180 146 19 21 chr3 42771370 42771746 -175265412 + THE1C LTR MaLR 1 375 0 293 373 55 41 chr3 42771864 42772156 -175265002 + L2 LINE L2 2969 3264 -8 420 281 0 0 chr3 42773596 42773692 -175263466 - MIR3 SINE MIR -32 176 81 352 231 35 0 chr3 42773919 42774006 -175263152 - MIR SINE MIR -65 143 71 376 267 69 46 chr3 42774346 42774563 -175262595 - HAL1 LINE L1 -22 2485 2264 270 239 58 58 chr3 42774716 42774854 -175262304 - HAL1b LINE L1 -457 891 754 2149 123 10 0 chr3 42775216 42775518 -175261640 - AluSg SINE Alu -5 305 1 243 321 78 31 chr3 42775668 42775861 -175261297 - HAL1 LINE L1 -762 1745 1544 793 283 118 31 chr3 42775861 42776275 -175260883 - LTR16A LTR ERVL 0 450 1 490 266 51 51 chr3 42776377 42776535 -175260623 - MER91A DNA MER1_type -19 177 20 1684 188 105 3 chr3 42777546 42777897 -175259261 + MLT1B LTR MaLR 4 390 0 196 217 17 67 chr3 42778553 42778613 -175258545 + MIR SINE MIR 68 124 -138 21 0 0 0 chr3 42778882 42778903 -175258255 + AT_rich Low_complexity Low_complexity 1 21 0 219 200 22 0 chr3 42778920 42778965 -175258193 + L2 LINE L2 3264 3309 -4 24 0 0 0 chr3 42779011 42779035 -175258123 + AT_rich Low_complexity Low_complexity 1 24 0 2077 159 47 0 chr3 42780099 42780420 -175256738 + Tigger7 DNA MER2_type 1 336 -2151 4458 81 21 5 chr3 42830420 42831024 -175206134 + L1MA1 LINE L1 5679 6292 -10 30 0 0 0 chr3 42831024 42831054 -175206104 + AT_rich Low_complexity Low_complexity 1 30 0 2723 224 40 3 chr3 42831610 42832232 -175204926 + L1ME3 LINE L1 5514 6158 -4 203 367 11 0 chr3 42832710 42832800 -175204358 + L2 LINE L2 2943 3033 -239 196 272 184 0 chr3 42833578 42833681 -175203477 + MIR SINE MIR 21 142 -66 306 292 24 23 chr3 42833735 42833872 -175203286 + L1P3 LINE L1 5647 5786 -368 22 35 0 0 chr3 42834029 42834058 -175203100 + AT_rich Low_complexity Low_complexity 1 29 0 2220 262 49 50 chr3 42835443 42835870 -175201288 + MER21B LTR ERV1 1 428 -435 2334 144 31 25 chr3 42835870 42836230 -175200928 + THE1B LTR MaLR 1 362 -2 2220 262 49 50 chr3 42836230 42836557 -175200601 + MER21B LTR ERV1 428 754 -109 523 302 47 21 chr3 42836568 42836760 -175200398 - LTR16C LTR ERVL -27 464 268 241 221 0 0 chr3 42836925 42836993 -175200165 + L1MC4 LINE L1 6636 6703 -1339 24 0 0 0 chr3 42838250 42838274 -175198884 + AT_rich Low_complexity Low_complexity 1 24 0 305 282 82 0 chr3 42838430 42838540 -175198618 - L2 LINE L2 -4 3309 3191 223 219 61 73 chr3 42838540 42838622 -175198536 + MIR SINE MIR 71 151 -111 1941 98 19 0 chr3 42838627 42838893 -175198265 + L1PA13 LINE L1 5893 6163 0 831 255 77 21 chr3 42838951 42839186 -175197972 + LTR67 LTR ERVL 308 555 -2 1984 84 247 167 chr3 42839899 42840437 -175196721 - LTR12 LTR ERV1 -133 581 1 208 253 93 0 chr3 42840508 42840583 -175196575 + MIR SINE MIR 60 141 -121 2403 175 75 46 chr3 42841232 42841728 -175195430 + MER67D LTR ERV1 1 510 -4 850 170 13 156 chr3 42842538 42842632 -175194526 - L1 LINE L1 -784 5362 5256 297 73 24 0 chr3 42842632 42842673 -175194485 + MADE1 DNA Mariner 1 42 -38 850 170 13 156 chr3 42842673 42842898 -175194260 - L1 LINE L1 -890 5256 5042 1244 276 111 13 chr3 42843214 42843816 -175193342 - HAL1b LINE L1 -278 1070 410 506 270 127 51 chr3 42844164 42844473 -175192685 - L1MEc LINE L1 -4445 1802 1518 2149 185 26 24 chr3 42844473 42844890 -175192268 + LTR52 LTR ERVL 1 418 -3 506 270 127 51 chr3 42844890 42845031 -175192127 - L1MEc LINE L1 -4729 1518 1389 2083 126 0 10 chr3 42845031 42845325 -175191833 + AluSc SINE Alu 3 293 -16 506 270 127 51 chr3 42845325 42845803 -175191355 - L1MEc LINE L1 -4858 1389 806 302 261 11 43 chr3 42846050 42846142 -175191016 + L1MC4 LINE L1 6615 6703 -1339 21 0 0 0 chr3 42846461 42846482 -175190676 + AT_rich Low_complexity Low_complexity 1 21 0 2072 144 7 0 chr3 42846482 42846787 -175190371 - AluSx SINE Alu -5 307 1 668 268 22 35 chr3 42847898 42848126 -175189032 + MIR SINE MIR 38 262 0 2211 115 3 3 chr3 42848587 42848899 -175188259 - AluSx SINE Alu 0 312 1 1892 128 16 46 chr3 42850102 42850408 -175186750 - AluJb SINE Alu -15 297 1 978 82 14 48 chr3 42851047 42851194 -175185964 + AluSc SINE Alu 160 301 -8 25 0 0 0 chr3 42851194 42851219 -175185939 + AT_rich Low_complexity Low_complexity 1 25 0 797 89 0 0 chr3 42851455 42851556 -175185602 + AluS SINE Alu 2 102 -210 784 68 38 0 chr3 42851558 42851691 -175185467 + (TA)n Simple_repeat Simple_repeat 2 139 0 1553 155 80 4 chr3 42851691 42851955 -175185203 - AluJb SINE Alu -28 284 1 1065 231 31 12 chr3 42851992 42852247 -175184911 + MIR SINE MIR 1 260 -2 691 252 56 56 chr3 42852256 42852558 -175184600 + L2 LINE L2 3008 3309 -4 181 0 33 33 chr3 42853040 42853070 -175184088 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 256 212 14 16 chr3 42853303 42853376 -175183782 - MLT1J2 LTR MaLR -7 428 326 345 287 37 15 chr3 42853568 42853704 -175183454 - MLT1J2 LTR MaLR -293 157 19 487 366 60 37 chr3 42854174 42854397 -175182761 - L2 LINE L2 -1 3271 3055 1150 103 0 27 chr3 42854397 42854582 -175182576 - L1MA8 LINE L1 -1 6290 6111 487 366 60 37 chr3 42854582 42854659 -175182499 - L2 LINE L2 -217 3055 2981 2219 107 17 0 chr3 42854659 42854959 -175182199 + AluSp SINE Alu 1 305 -8 487 366 60 37 chr3 42854959 42855364 -175181794 - L2 LINE L2 -291 2981 2553 1194 253 90 31 chr3 42855512 42855935 -175181223 + LTR16A1 LTR ERVL 1 448 -9 306 270 72 9 chr3 42856344 42856455 -175180703 + MIR3 SINE MIR 86 203 -5 411 113 0 0 chr3 42856493 42856555 -175180603 + (T)n Simple_repeat Simple_repeat 1 62 0 290 275 11 79 chr3 42857185 42857374 -175179784 + GA-rich Low_complexity Low_complexity 1 176 0 236 281 16 16 chr3 42857557 42857621 -175179537 - MIR SINE MIR -185 77 14 454 284 15 17 chr3 42857706 42857883 -175179275 + MIR SINE MIR 4 176 -62 184 285 185 25 chr3 42858642 42858842 -175178316 - MIR SINE MIR -2 260 29 233 326 121 23 chr3 42859471 42859603 -175177555 + L2 LINE L2 3085 3229 -43 844 165 94 24 chr3 42859908 42860078 -175177080 - MER5A DNA MER1_type 0 189 8 387 33 49 0 chr3 42860935 42860996 -175176162 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 320 312 32 51 chr3 42861041 42861198 -175175960 + HAL1 LINE L1 945 1098 -1409 242 326 34 0 chr3 42861751 42861840 -175175318 + MER94 DNA DNA 1 92 -42 683 279 24 90 chr3 42862669 42863002 -175174156 + MLT1I LTR MaLR 77 387 -22 229 197 0 56 chr3 42863768 42863839 -175173319 + G-rich Low_complexity Low_complexity 6 72 0 270 344 0 0 chr3 42864015 42864169 -175172989 + G-rich Low_complexity Low_complexity 1 154 0 765 85 0 0 chr3 42864215 42864321 -175172837 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 287 284 182 7 chr3 42864524 42864672 -175172486 + MIR3 SINE MIR 34 207 -1 674 264 90 15 chr3 42865177 42865557 -175171601 - MLT1J2 LTR MaLR -11 439 2 3050 108 32 0 chr3 42866197 42866634 -175170524 + L1MA3 LINE L1 5855 6305 0 220 204 19 37 chr3 42867103 42867157 -175170001 - MIR SINE MIR -190 72 20 533 86 0 12 chr3 42867251 42867332 -175169826 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 1860 143 43 3 chr3 42867336 42867636 -175169522 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 42868057 42868078 -175169080 + GC_rich Low_complexity Low_complexity 1 21 0 322 277 80 104 chr3 42869843 42870132 -175167026 - L2 LINE L2 -32 3240 2959 1082 273 111 12 chr3 42870945 42871351 -175165807 + MLT1J1 LTR MaLR 1 446 0 234 0 0 0 chr3 42872040 42872066 -175165092 + (CTG)n Simple_repeat Simple_repeat 2 27 0 3862 96 27 7 chr3 42872641 42873202 -175163956 + L1PA13 LINE L1 5572 6143 -20 234 0 0 0 chr3 42874524 42874550 -175162608 + (T)n Simple_repeat Simple_repeat 1 26 0 323 267 216 23 chr3 42875437 42875613 -175161545 - MIR SINE MIR -50 212 3 442 245 44 13 chr3 42876148 42876306 -175160852 + MIR SINE MIR 69 230 -32 201 207 0 0 chr3 42878345 42878374 -175158784 + T-rich Low_complexity Low_complexity 1 29 0 709 254 69 43 chr3 42878510 42878860 -175158298 + LTR16A LTR ERVL 92 450 0 1780 235 92 57 chr3 42879389 42880322 -175156836 - HAL1 LINE L1 -866 1641 676 433 292 134 11 chr3 42880341 42880618 -175156540 - HAL1 LINE L1 -1898 609 299 2582 118 16 5 chr3 42880618 42881049 -175156109 - Tigger4(Zombi) DNA MER2_type 0 2731 2296 322 154 123 0 chr3 42881054 42881119 -175156039 - Tigger4(Zombi) DNA MER2_type -2658 73 1 657 231 106 97 chr3 42882985 42883466 -175153692 - MLT1H LTR MaLR -7 542 15 332 282 134 12 chr3 42883869 42883986 -175153172 + MIR SINE MIR 10 137 -71 183 227 23 23 chr3 42884474 42884518 -175152640 - MIR SINE MIR -149 59 16 225 183 0 0 chr3 42884667 42884727 -175152431 + (CA)n Simple_repeat Simple_repeat 1 60 0 391 253 120 27 chr3 42885438 42885588 -175151570 - MER5A DNA MER1_type -1 188 25 1811 110 0 0 chr3 42885622 42885858 -175151300 + AluSx SINE Alu 1 236 -76 1827 179 3 7 chr3 42885894 42886190 -175150968 - AluJo SINE Alu -17 295 1 237 255 0 0 chr3 42886261 42886312 -175150846 - MIR SINE MIR -126 136 86 800 195 67 0 chr3 42886513 42886708 -175150450 - L1MD3 LINE L1 -1 7994 7787 246 240 0 0 chr3 42886897 42886947 -175150211 + LTR16A1 LTR ERVL 3 52 -405 1123 189 122 50 chr3 42887021 42887381 -175149777 + LTR16A1 LTR ERVL 58 443 -14 1055 197 45 42 chr3 42888975 42889266 -175147892 + L1MA10 LINE L1 6024 6318 -16 2293 98 0 7 chr3 42889266 42889562 -175147596 - AluSp SINE Alu -19 294 1 1055 197 45 42 chr3 42889562 42889580 -175147578 + L1MA10 LINE L1 6318 6334 0 388 248 66 16 chr3 42891041 42891162 -175145996 + MIR SINE MIR 107 233 -29 923 200 33 0 chr3 42891363 42891543 -175145615 + MER5A DNA MER1_type 2 187 -2 429 217 7 20 chr3 42893982 42894134 -175143024 + CT-rich Low_complexity Low_complexity 1 150 0 369 0 0 0 chr3 42894856 42894897 -175142261 + (CA)n Simple_repeat Simple_repeat 1 41 0 472 269 87 39 chr3 42895371 42895579 -175141579 - HAL1 LINE L1 -2279 228 11 462 236 101 34 chr3 42895898 42896076 -175141082 - L1ME LINE L1 -369 5752 5563 317 377 85 11 chr3 42897048 42897329 -175139829 + L2 LINE L2 2404 2705 -609 228 268 85 0 chr3 42897341 42897423 -175139735 + HAL1 LINE L1 4 92 -2415 240 261 0 23 chr3 42898146 42898234 -175138924 + HAL1 LINE L1 821 906 -1601 2327 85 3 10 chr3 42898438 42898744 -175138414 - AluSg SINE Alu -6 304 1 33 0 0 0 chr3 42898866 42898899 -175138259 + AT_rich Low_complexity Low_complexity 1 33 0 563 264 133 58 chr3 42899085 42899482 -175137676 - L1ME3A LINE L1 -219 5951 5525 225 262 12 12 chr3 42899580 42899664 -175137494 - L1ME3A LINE L1 -1567 4579 4496 472 275 40 56 chr3 42900380 42900755 -175136403 - L1MC5 LINE L1 -54 7907 7539 743 266 183 12 chr3 42900877 42901068 -175136090 - L1MC4a LINE L1 -1640 6168 6011 450 0 0 0 chr3 42901068 42901118 -175136040 + (TG)n Simple_repeat Simple_repeat 1 50 0 743 266 183 12 chr3 42901118 42901434 -175135724 - L1MC4a LINE L1 -1797 6011 5574 279 0 0 0 chr3 42902286 42902317 -175134841 + (TAA)n Simple_repeat Simple_repeat 1 31 0 385 253 58 89 chr3 42902538 42902728 -175134430 - MLT1H LTR MaLR -343 206 23 278 340 56 23 chr3 42902793 42903010 -175134148 - MIR3 SINE MIR -26 236 2 12659 197 39 12 chr3 42904387 42907634 -175129524 - L1 LINE L1 -821 6346 3009 300 198 19 38 chr3 42907646 42907752 -175129406 + CT-rich Low_complexity Low_complexity 1 104 0 1980 173 3 0 chr3 42907762 42908069 -175129089 - AluSx SINE Alu -2 310 3 1653 265 65 59 chr3 42908628 42908944 -175128214 - L1 LINE L1 -4158 3010 2697 896 116 0 7 chr3 42908944 42909090 -175128068 + (TTTC)n Simple_repeat Simple_repeat 4 148 0 2235 90 0 0 chr3 42909090 42909369 -175127789 - AluY SINE Alu -32 279 1 1653 265 65 59 chr3 42909369 42910495 -175126663 - L1 LINE L1 -4470 2698 1617 322 387 6 17 chr3 42911426 42911599 -175125559 - L1 LINE L1 -5970 1128 958 480 308 137 22 chr3 42911785 42912107 -175125051 + MLT1J LTR MaLR 110 468 -43 347 336 16 0 chr3 42912755 42912883 -175124275 + L2 LINE L2 2581 2710 -604 4998 152 37 10 chr3 42912885 42913886 -175123272 + L1MA7 LINE L1 5261 6288 -3 268 319 74 42 chr3 42914043 42914259 -175122899 + L2 LINE L2 2992 3214 -58 182 342 13 13 chr3 42915359 42915435 -175121723 - L3b LINE CR1 -180 1403 1328 470 291 67 56 chr3 42915766 42916034 -175121124 - HAL1b LINE L1 -46 1302 1032 611 289 76 36 chr3 42916034 42916390 -175120768 - HAL1b LINE L1 -596 752 383 2091 251 72 11 chr3 42917032 42917697 -175119461 - L1ME3A LINE L1 -11 6159 5454 410 252 140 0 chr3 42919372 42919515 -175117643 - MLT1L LTR MaLR -311 304 142 239 186 18 71 chr3 42919716 42919829 -175117329 + (TTATA)n Simple_repeat Simple_repeat 5 111 0 199 257 122 27 chr3 42922250 42922324 -175114834 + L2 LINE L2 3161 3241 -31 523 230 175 5 chr3 42923700 42923900 -175113258 - LTR16A1 LTR ERVL 0 457 224 382 316 138 13 chr3 42924408 42924633 -175112525 - L3 LINE CR1 -60 1517 1265 188 341 71 12 chr3 42925022 42925107 -175112051 + MIR SINE MIR 27 116 -92 653 329 101 10 chr3 42925226 42925810 -175111348 - L2 LINE L2 -1142 2172 1536 766 214 10 36 chr3 42927342 42927534 -175109624 - MER5A DNA MER1_type -1 188 2 2054 151 13 53 chr3 42928331 42928780 -175108378 + LTR23 LTR ERV1 7 437 0 1764 263 44 5 chr3 42929183 42929749 -175107409 - L1ME3A LINE L1 -11 6159 5572 2141 119 0 13 chr3 42929765 42930067 -175107091 + AluSx SINE Alu 1 298 -14 640 313 93 48 chr3 42930131 42930225 -175106933 + L1MC4a LINE L1 5190 5278 -892 757 309 4 0 chr3 42930225 42930481 -175106677 - MIR SINE MIR -4 258 2 640 313 93 48 chr3 42930481 42931090 -175106068 + L1MC4a LINE L1 5278 5809 -361 2123 118 3 0 chr3 42931200 42931497 -175105661 - AluSx SINE Alu -14 298 1 1820 123 0 4 chr3 42931574 42931826 -175105332 - AluSc SINE Alu -15 294 44 23 33 0 0 chr3 42932137 42932167 -175104991 + AT_rich Low_complexity Low_complexity 1 30 0 1449 211 109 32 chr3 42932383 42932858 -175104300 + MLT1H LTR MaLR 1 512 -37 265 155 52 35 chr3 42932905 42933079 -175104079 + (TA)n Simple_repeat Simple_repeat 2 178 0 1045 174 5 14 chr3 42933079 42933292 -175103866 - L1MA8 LINE L1 -105 6186 5976 347 328 104 25 chr3 42933353 42933594 -175103564 + HAL1b LINE L1 515 774 -574 3532 160 65 9 chr3 42934379 42935149 -175102009 + L1MA8 LINE L1 5475 6287 -4 269 285 77 46 chr3 42936401 42936531 -175100627 + MIR SINE MIR 18 151 -111 1292 211 63 41 chr3 42937647 42938059 -175099099 + L1ME3A LINE L1 5748 6168 -2 283 286 144 38 chr3 42938388 42938811 -175098347 + HAL1 LINE L1 1211 1678 -829 232 231 62 15 chr3 42940795 42940860 -175096298 + MIR SINE MIR 119 186 -76 277 327 30 42 chr3 42941939 42942104 -175095054 - MLT1J2 LTR MaLR -25 425 263 552 291 0 0 chr3 42942786 42942934 -175094224 + MER117 DNA MER1_type 24 171 -26 665 310 74 25 chr3 42943354 42943838 -175093320 + LTR33 LTR ERVL 14 521 0 34 24 0 0 chr3 42944239 42944280 -175092878 + AT_rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr3 42944589 42944610 -175092548 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 42945411 42945434 -175091724 + AT_rich Low_complexity Low_complexity 1 23 0 6395 83 4 65 chr3 42945853 42946665 -175090493 + L1MA2 LINE L1 5219 5944 -360 2469 122 19 3 chr3 42946665 42947034 -175090124 + THE1C LTR MaLR 1 375 0 6395 83 4 65 chr3 42947034 42947365 -175089793 + L1MA2 LINE L1 5944 6294 -10 725 206 29 6 chr3 42949556 42949726 -175087432 - MSTD LTR MaLR -3 393 220 24 0 0 0 chr3 42950069 42950093 -175087065 + AT_rich Low_complexity Low_complexity 1 24 0 325 328 169 28 chr3 42950558 42950918 -175086240 + L1M4 LINE L1 3690 4100 -2046 231 331 141 0 chr3 42951495 42951616 -175085542 + MIR SINE MIR 2 139 -123 207 267 56 0 chr3 42951704 42951794 -175085364 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 23 33 0 0 chr3 42951937 42951967 -175085191 + AT_rich Low_complexity Low_complexity 1 30 0 227 175 18 35 chr3 42952114 42952171 -175084987 - MLT1J1 LTR MaLR -36 410 355 324 265 0 12 chr3 42952273 42952356 -175084802 - MLT1J2 LTR MaLR -302 148 67 201 39 0 0 chr3 42953941 42953967 -175083191 + (CA)n Simple_repeat Simple_repeat 1 26 0 1058 213 77 0 chr3 42954994 42955201 -175081957 - MER58A DNA MER1_type -1 223 1 451 330 134 14 chr3 42955331 42955540 -175081618 - MIR SINE MIR -26 236 3 917 254 60 58 chr3 42956086 42956390 -175080768 - L1ME2 LINE L1 -283 5881 5574 1542 208 7 3 chr3 42956390 42956674 -175080484 + AluJb SINE Alu 3 287 -25 917 254 60 58 chr3 42956674 42956838 -175080320 - L1ME2 LINE L1 -590 5574 5412 218 378 0 10 chr3 42957116 42957214 -175079944 + MIR SINE MIR 58 154 -108 321 242 22 11 chr3 42957694 42957785 -175079373 + MIR SINE MIR 156 247 -15 268 293 170 0 chr3 42958769 42958875 -175078283 - L2 LINE L2 -10 3262 3139 207 267 367 0 chr3 42959535 42959655 -175077503 - L2 LINE L2 -8 3264 3101 912 273 37 20 chr3 42959772 42960120 -175077038 - LTR16C LTR ERVL -5 486 133 268 281 58 41 chr3 42960912 42961033 -175076125 + MIR SINE MIR 106 228 -34 2990 142 36 17 chr3 42961585 42962106 -175075052 - LTR26B LTR ERV1 0 531 1 222 378 107 18 chr3 42962301 42962526 -175074632 + L2 LINE L2 2864 3108 -164 547 234 94 42 chr3 42962618 42962933 -175074225 + MLT1J2 LTR MaLR 67 448 -2 190 297 110 34 chr3 42963662 42963780 -175073378 - MIR SINE MIR -54 208 82 383 226 9 85 chr3 42964512 42964651 -175072507 + MIR SINE MIR 7 138 -70 428 229 130 0 chr3 42965385 42965516 -175071642 + MLT1E1 LTR MaLR 1 148 -506 323 221 13 0 chr3 42965644 42965721 -175071437 + MLT1E3 LTR MaLR 547 624 0 814 232 16 11 chr3 42966455 42966640 -175070518 - MER5A DNA MER1_type -2 187 2 514 317 107 10 chr3 42967613 42967818 -175069340 - MIR SINE MIR -4 258 34 1434 182 72 43 chr3 42967874 42968248 -175068910 + MLT1B LTR MaLR 1 385 -5 274 156 0 143 chr3 42968585 42968662 -175068496 + MLT1H LTR MaLR 481 546 -3 434 220 50 71 chr3 42968878 42969019 -175068139 + MIR SINE MIR 20 157 -105 225 299 6 128 chr3 42969431 42969595 -175067563 + MIR SINE MIR 84 227 -35 378 308 9 0 chr3 42969636 42969743 -175067415 - MIR3 SINE MIR -46 162 55 525 286 130 44 chr3 42969838 42970153 -175067005 - L3 LINE CR1 -2 1575 1234 250 191 113 113 chr3 42970381 42970549 -175066609 - L2 LINE L2 -54 3259 3092 2340 105 20 8 chr3 42970905 42971256 -175065902 + THE1A LTR MaLR 1 355 0 11107 98 29 1 chr3 42971256 42972793 -175064365 + THE1A-int LTR MaLR 1 1580 0 2211 136 8 8 chr3 42972795 42973148 -175064010 + THE1A LTR MaLR 3 355 0 243 135 0 0 chr3 42973575 42973612 -175063546 + MLT1I LTR MaLR 101 137 -272 1139 110 13 0 chr3 42973631 42973786 -175063372 - AluSq SINE Alu -109 204 48 1424 238 95 66 chr3 42975916 42976691 -175060467 + L2 LINE L2 2499 3306 -7 375 351 0 12 chr3 42976689 42976813 -175060345 - MIR SINE MIR -85 123 3 * 237 135 0 0 chr3 42977416 42977468 -175059690 + (TA)n Simple_repeat Simple_repeat 2 53 0 736 245 241 10 chr3 42977528 42977880 -175059278 + MLT1G1 LTR MaLR 77 558 -37 307 287 90 27 chr3 42978110 42978333 -175058825 - LTR16A1 LTR ERVL -220 237 1 2112 159 55 26 chr3 42980371 42980787 -175056371 + MSTC LTR MaLR 1 428 0 251 140 20 0 chr3 42980827 42980877 -175056281 + CT-rich Low_complexity Low_complexity 3 53 0 218 337 180 22 chr3 42981224 42981625 -175055533 - L2 LINE L2 -957 2357 1894 971 288 154 17 chr3 42982383 42982741 -175054417 + L2 LINE L2 2901 3307 -6 282 353 23 30 chr3 42983032 42983165 -175053993 - MIR3 SINE MIR -14 194 63 629 344 100 31 chr3 42983725 42983999 -175053159 + L2 LINE L2 1801 2055 -1259 408 281 111 96 chr3 42983999 42984540 -175052618 + MLT1H LTR MaLR 1 549 0 629 344 100 31 chr3 42984540 42985042 -175052116 + L2 LINE L2 2055 2631 -683 24 0 0 0 chr3 42985123 42985147 -175052011 + AT_rich Low_complexity Low_complexity 1 24 0 249 279 80 43 chr3 42985206 42985482 -175051676 - L1MEd LINE L1 -3519 3329 3044 241 277 0 0 chr3 42985583 42985666 -175051492 - L1MEd LINE L1 -3961 2888 2806 25 0 0 0 chr3 42986121 42986146 -175051012 + AT_rich Low_complexity Low_complexity 1 25 0 407 261 98 62 chr3 42986181 42986941 -175050217 - L1MEd LINE L1 -4703 2326 1504 352 296 26 40 chr3 42986944 42987096 -175050062 + MIR SINE MIR 113 262 0 719 310 41 35 chr3 42987159 42987553 -175049605 - L1MEd LINE L1 -5396 1442 1047 923 256 30 0 chr3 42987747 42987950 -175049208 - MER58A DNA MER1_type -15 209 1 344 258 41 31 chr3 42989649 42989746 -175047412 + MIR SINE MIR 29 126 -136 253 329 19 19 chr3 42989815 42990028 -175047130 - L1M4 LINE L1 -3595 2551 2339 222 91 0 0 chr3 42990048 42990081 -175047077 + (CA)n Simple_repeat Simple_repeat 2 34 0 709 295 73 54 chr3 42990807 42991367 -175045791 + L1MEd LINE L1 527 1097 -5022 4511 137 8 16 chr3 42991874 42992665 -175044493 - L1MA4A LINE L1 -6 6999 6216 3596 135 2 14 chr3 42992665 42993250 -175043908 + L1PB3 LINE L1 5575 6152 -2 8528 185 120 15 chr3 42993254 42995753 -175041405 - L1MA4A LINE L1 -743 6105 3456 6106 176 47 159 chr3 42995749 42996104 -175041054 - L1MA4A LINE L1 -4812 2037 1644 * 231 103 0 0 chr3 42996104 42996143 -175041015 + (TG)n Simple_repeat Simple_repeat 2 40 0 6106 176 47 159 chr3 42996143 42998077 -175039081 - L1MA4A LINE L1 -5205 1644 4 549 168 124 124 chr3 42998138 42998412 -175038746 - ORSL DNA AcHobo -1 274 1 706 279 63 35 chr3 42998426 42998741 -175038417 - LTR16C LTR ERVL 0 491 168 313 379 12 12 chr3 42999128 42999289 -175037869 + MIR3 SINE MIR 21 181 -27 375 339 79 31 chr3 42999326 42999580 -175037578 - L2 LINE L2 -5 3267 3002 255 330 19 38 chr3 43000981 43001087 -175036071 - MIR SINE MIR -80 128 25 519 280 71 48 chr3 43001405 43001902 -175035256 - MLT1G LTR MaLR -6 549 25 245 349 89 36 chr3 43002049 43002330 -175034828 - L2 LINE L2 -384 2930 2635 5028 137 17 2 chr3 43002349 43003177 -175033981 + L1PA15 LINE L1 5322 6161 -4 599 207 75 48 chr3 43003235 43003423 -175033735 + MIR SINE MIR 3 195 -67 236 293 198 0 chr3 43003416 43003532 -175033626 + L2 LINE L2 3175 3313 0 * 420 261 9 132 chr3 43003559 43003908 -175033250 + L1MC4a LINE L1 5624 5929 -1879 210 244 0 0 chr3 43003908 43003953 -175033205 + (TATG)n Simple_repeat Simple_repeat 4 48 0 361 274 83 30 chr3 43004527 43004695 -175032463 - MIR SINE MIR -21 241 65 336 291 30 70 chr3 43004737 43004936 -175032222 - MIR3 SINE MIR 0 208 18 1357 203 21 7 chr3 43005381 43005671 -175031487 + MLT1E1 LTR MaLR 2 295 -359 955 222 65 0 chr3 43005691 43005921 -175031237 + MLT1E1 LTR MaLR 410 654 0 3660 32 2 0 chr3 43006080 43006518 -175030640 + L1PA4 LINE L1 5714 6152 -3 371 336 25 18 chr3 43006667 43006822 -175030336 + MIR SINE MIR 3 155 -61 205 191 0 0 chr3 43007282 43007324 -175029834 + A-rich Low_complexity Low_complexity 2 43 0 273 289 74 25 chr3 43007873 43007994 -175029164 + MIR3 SINE MIR 82 208 0 4238 92 1 94 chr3 43008044 43008776 -175028382 + MER4A LTR ERV1 1 664 0 216 200 0 0 chr3 43009456 43009506 -175027652 + GA-rich Low_complexity Low_complexity 2 51 0 922 257 88 16 chr3 43009850 43010169 -175026989 - LTR16C LTR ERVL -1 490 149 337 282 54 20 chr3 43010811 43010960 -175026198 - MIR SINE MIR -108 154 1 424 254 92 21 chr3 43011545 43011687 -175025471 - L2 LINE L2 -1 3312 3161 231 170 0 0 chr3 43011936 43011983 -175025175 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 261 0 0 chr3 43012499 43012564 -175024594 - MIR SINE MIR -11 251 187 293 229 0 31 chr3 43013361 43013457 -175023701 + (CATA)n Simple_repeat Simple_repeat 2 94 0 279 242 172 20 chr3 43014141 43014240 -175022918 + MIR3 SINE MIR 15 128 -80 663 237 11 59 chr3 43014283 43014469 -175022689 + MLT1D LTR MaLR 1 177 -328 7844 16 0 0 chr3 43014484 43015671 -175021487 - L1PA2 LINE L1 0 6155 4969 32859 55 2 1 chr3 43015773 43020130 -175017028 - L1P LINE L1 -1784 4362 1 1563 157 17 24 chr3 43020134 43020427 -175016731 + L1PA13 LINE L1 5865 6155 -8 926 178 29 6 chr3 43020437 43020611 -175016547 + MLT1D LTR MaLR 326 503 -2 206 343 65 28 chr3 43021339 43021447 -175015711 - MIR SINE MIR -149 113 2 362 322 54 42 chr3 43021982 43022221 -175014937 + MIR SINE MIR 10 251 -11 2441 100 0 0 chr3 43022392 43022702 -175014456 - AluSx SINE Alu -2 310 1 2207 118 0 0 chr3 43023090 43023379 -175013779 - AluSg SINE Alu -21 289 1 205 247 191 11 chr3 43023906 43023995 -175013163 - L2 LINE L2 -17 3255 3151 21 0 0 0 chr3 43024071 43024092 -175013066 + AT_rich Low_complexity Low_complexity 1 21 0 304 330 181 6 chr3 43024337 43024519 -175012639 - MIR SINE MIR -17 245 32 * 307 244 0 7 chr3 43024514 43024586 -175012572 + MIR SINE MIR 95 148 -60 188 299 174 48 chr3 43025589 43025756 -175011402 - MIR SINE MIR -10 252 65 665 255 53 103 chr3 43026602 43027144 -175010014 + L1MC4 LINE L1 6647 7161 -800 6799 199 42 39 chr3 43027170 43030041 -175007117 - L1MA10 LINE L1 0 6222 3367 19355 186 21 14 chr3 43030045 43032117 -175005041 - L1PA12 LINE L1 -2 7604 5548 1791 165 147 26 chr3 43032117 43032499 -175004659 + MSTA LTR MaLR 1 428 0 19355 186 21 14 chr3 43032499 43037199 -174999959 - L1PA12 LINE L1 -2058 5548 1 1078 206 36 0 chr3 43037245 43037522 -174999636 - L1MA10 LINE L1 -2656 3378 3092 3690 163 50 8 chr3 43037538 43038276 -174998882 - L1MA4A LINE L1 -23 6982 6214 5881 192 26 6 chr3 43038843 43040172 -174996986 - L1MA4A LINE L1 -814 6034 4679 * 6191 77 14 16 chr3 43040170 43041083 -174996075 - L1PA8 LINE L1 -5 6167 5257 1901 192 14 33 chr3 43041078 43041230 -174995928 - L1MA4A LINE L1 -2158 4690 4537 * 2398 82 0 0 chr3 43041230 43041524 -174995634 - AluY SINE Alu -17 294 1 1901 192 14 33 chr3 43041524 43041809 -174995349 - L1MA4A LINE L1 -2311 4537 4260 2607 98 40 21 chr3 43041809 43042238 -174994920 - L1MA1 LINE L1 0 6302 5866 1901 192 14 33 chr3 43042238 43042283 -174994875 - L1MA4A LINE L1 -2588 4260 4216 5269 215 23 36 chr3 43042283 43043547 -174993611 - L1MA4A LINE L1 -4896 1953 706 2809 273 75 27 chr3 43043560 43047181 -174989977 - L1MA10 LINE L1 -2942 3092 11 230 135 0 0 chr3 43047194 43047231 -174989927 + L1MC5 LINE L1 7173 7209 -752 355 282 89 8 chr3 43047385 43047509 -174989649 + L1MC5 LINE L1 7270 7403 -558 933 278 39 66 chr3 43047638 43047807 -174989351 + MLT1H LTR MaLR 68 240 -355 1676 181 24 0 chr3 43047807 43048099 -174989059 - AluJo SINE Alu -13 299 1 933 278 39 66 chr3 43048099 43048423 -174988735 + MLT1H LTR MaLR 240 595 0 425 37 0 0 chr3 43048668 43048763 -174988395 + L1PA4 LINE L1 6089 6155 0 4563 151 19 3 chr3 43048763 43050235 -174986923 - L1PA14 LINE L1 -297 5864 4379 910 253 93 27 chr3 43050255 43050556 -174986602 - MLT1D LTR MaLR -175 330 10 562 211 0 0 chr3 43050599 43050708 -174986450 - MLT1D LTR MaLR -396 109 1 382 311 15 8 chr3 43050758 43050890 -174986268 + MIR SINE MIR 74 206 -56 1814 179 42 6 chr3 43050942 43051278 -174985880 + MER7A DNA MER2_type 1 346 0 263 290 48 10 chr3 43051278 43051417 -174985741 - MLT1J2 LTR MaLR -2 444 300 299 306 31 0 chr3 43051443 43051541 -174985617 - MLT1J2 LTR MaLR -209 241 141 331 236 34 11 chr3 43051554 43051643 -174985515 - MLT1J1 LTR MaLR -355 91 1 428 313 192 31 chr3 43051907 43052542 -174984616 - L2 LINE L2 -1003 2311 1575 22 56 0 0 chr3 43052885 43052921 -174984237 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 43053069 43053098 -174984060 + AT_rich Low_complexity Low_complexity 1 29 0 560 319 29 21 chr3 43053484 43053722 -174983436 + L2 LINE L2 3074 3313 0 322 333 0 17 chr3 43054047 43054167 -174982991 - L2 LINE L2 0 3313 3196 277 308 165 0 chr3 43054204 43054337 -174982821 + L2 LINE L2 3117 3271 -1 340 268 24 47 chr3 43054491 43054618 -174982540 - MIR SINE MIR -2 260 137 215 345 0 0 chr3 43055220 43055278 -174981880 + MIR SINE MIR 53 110 -152 2177 145 53 13 chr3 43055291 43055685 -174981473 - MSTA LTR MaLR 0 428 19 180 125 0 0 chr3 43056016 43056048 -174981110 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 225 310 178 47 chr3 43056156 43056285 -174980873 + L2 LINE L2 3127 3272 0 25072 44 40 2 chr3 43057060 43060399 -174976759 - L1P LINE L1 -2681 3465 1 635 240 208 8 chr3 43060427 43060677 -174976481 + MLT1D LTR MaLR 191 490 -15 215 306 174 50 chr3 43061416 43061537 -174975621 - L2 LINE L2 0 3272 3137 2121 92 9 0 chr3 43061859 43062186 -174974972 + L1P LINE L1 1179 1508 -4638 * 12362 23 0 0 chr3 43062179 43063689 -174973469 + L1P LINE L1 3447 4956 -1190 5835 58 5 3 chr3 43063793 43064751 -174972407 - L1PA4 LINE L1 -144 6011 5051 23 54 0 0 chr3 43064891 43064928 -174972230 + GC_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr3 43065123 43065146 -174972012 + GC_rich Low_complexity Low_complexity 1 23 0 1733 224 13 34 chr3 43065277 43065720 -174971438 + MLT1E3 LTR MaLR 233 624 0 27 89 0 0 chr3 43066374 43066419 -174970739 + GC_rich Low_complexity Low_complexity 1 45 0 439 249 53 34 chr3 43066682 43066891 -174970267 + L1MC5 LINE L1 7714 7926 -35 22 0 0 0 chr3 43067579 43067601 -174969557 + AT_rich Low_complexity Low_complexity 1 22 0 212 370 58 0 chr3 43067682 43067836 -174969322 - MIR SINE MIR -9 253 91 5660 65 5 3 chr3 43069710 43070470 -174966688 - L1PA7 LINE L1 -3 6151 5390 252 0 0 0 chr3 43070470 43070498 -174966660 + (TTA)n Simple_repeat Simple_repeat 3 30 0 33859 92 28 9 chr3 43070498 43076532 -174960626 - L1PA6 LINE L1 -18 6136 2 6257 98 2 0 chr3 43076534 43077484 -174959674 - L1PA7 LINE L1 -749 5397 4446 366 279 61 34 chr3 43077503 43077650 -174959508 + MIR3 SINE MIR 55 205 -3 578 296 32 8 chr3 43077753 43078006 -174959152 + L1ME LINE L1 5521 5779 -391 2519 207 24 0 chr3 43078346 43078920 -174958238 - L1MB7 LINE L1 -217 5967 5380 22 0 0 0 chr3 43078948 43078970 -174958188 + AT_rich Low_complexity Low_complexity 1 22 0 4410 176 23 32 chr3 43078981 43079948 -174957210 - L1MA7 LINE L1 -10 6281 5324 609 164 0 29 chr3 43079953 43080057 -174957101 - FRAM SINE Alu -24 152 52 475 205 5 146 chr3 43080450 43080655 -174956503 + MER51C LTR ERV1 453 628 -12 342 77 92 31 chr3 43080664 43080729 -174956429 + MER51C-int LTR ERV1 1 69 -7747 2002 131 3 16 chr3 43080944 43081249 -174955909 - AluSx SINE Alu -11 301 1 295 135 21 146 chr3 43081519 43081615 -174955543 + MER51C-int LTR ERV1 698 781 -7035 * 304 345 23 0 chr3 43081613 43081787 -174955371 + PRIMA41-int LTR ERV1 2643 2820 -4936 5733 178 30 14 chr3 43081987 43083242 -174953916 - L1MA7 LINE L1 -1185 4961 3688 3262 199 61 150 chr3 43083247 43084392 -174952766 - L1MB7 LINE L1 -768 5378 4331 894 220 18 0 chr3 43084392 43084560 -174952598 + AluJb SINE Alu 133 303 -9 3262 199 61 150 chr3 43084560 43085393 -174951765 - L1MB7 LINE L1 -1815 4331 3425 25 0 0 0 chr3 43085431 43085456 -174951702 + AT_rich Low_complexity Low_complexity 1 25 0 310 157 14 14 chr3 43085502 43085572 -174951586 + CT-rich Low_complexity Low_complexity 1 70 0 435 313 44 53 chr3 43085573 43085714 -174951444 - L2 LINE L2 -13 3300 3160 252 59 0 0 chr3 43085714 43085748 -174951410 + (CA)n Simple_repeat Simple_repeat 2 35 0 435 313 44 53 chr3 43085748 43085833 -174951325 - L2 LINE L2 -153 3160 3076 23 0 0 0 chr3 43086045 43086068 -174951090 + AT_rich Low_complexity Low_complexity 1 23 0 387 300 253 17 chr3 43087248 43087481 -174949677 - L3 LINE CR1 -88 1489 1202 1680 104 9 0 chr3 43088746 43088966 -174948192 - AluSg/x SINE Alu -24 288 67 947 274 104 40 chr3 43089143 43089548 -174947610 - LTR16A1 LTR ERVL 0 457 27 2184 127 0 13 chr3 43089849 43090163 -174946995 - AluSx SINE Alu -2 310 1 424 118 153 12 chr3 43090163 43090222 -174946936 + L1MA9 LINE L1 6093 6169 -143 216 67 0 0 chr3 43090222 43090252 -174946906 + (CA)n Simple_repeat Simple_repeat 1 30 0 424 118 153 12 chr3 43090252 43090277 -174946881 + L1MA9 LINE L1 6169 6189 -123 191 263 158 12 chr3 43090390 43090511 -174946647 - MIR SINE MIR -58 150 17 2395 82 0 0 chr3 43091136 43091428 -174945730 + AluY SINE Alu 1 292 -19 292 264 124 0 chr3 43091568 43091697 -174945461 + Charlie7 DNA MER1_type 331 475 -2137 1590 219 41 0 chr3 43091707 43092073 -174945085 - L1PA16 LINE L1 -1 6165 5785 276 239 0 15 chr3 43092075 43092142 -174945016 + (TA)n Simple_repeat Simple_repeat 2 67 0 2689 174 36 32 chr3 43092142 43093248 -174943910 - L1PA16 LINE L1 -364 5792 4670 229 221 91 13 chr3 43093428 43093505 -174943653 + LTR16A1 LTR ERVL 223 305 -152 355 266 177 0 chr3 43093602 43093726 -174943432 + MIR SINE MIR 85 230 -32 786 249 62 97 chr3 43094096 43094561 -174942597 - LTR16A1 LTR ERVL -2 455 7 632 167 84 9 chr3 43094690 43094905 -174942253 - Charlie5 DNA MER1_type 0 2620 2390 229 309 89 41 chr3 43095091 43095214 -174941944 + MIR SINE MIR 23 151 -111 593 219 0 39 chr3 43095502 43095630 -174941528 - FLAM_A SINE Alu -10 123 1 206 257 40 40 chr3 43095683 43095757 -174941401 - MIR3 SINE MIR -12 196 123 621 130 38 8 chr3 43096287 43096418 -174940740 - Charlie5 DNA MER1_type -27 2585 2451 783 261 32 9 chr3 43097771 43097989 -174939169 + MER58A DNA MER1_type 1 223 -1 777 251 130 0 chr3 43098000 43098247 -174938911 - LTR16C LTR ERVL 0 491 213 701 246 50 61 chr3 43098699 43098976 -174938182 - MLT1H LTR MaLR -257 292 19 1603 110 5 0 chr3 43099125 43099334 -174937824 - AluSc SINE Alu -94 215 6 340 135 56 8 chr3 43099501 43099627 -174937531 + (TA)n Simple_repeat Simple_repeat 1 132 0 242 305 59 69 chr3 43100754 43100957 -174936201 - L2 LINE L2 -96 3176 2976 796 277 60 8 chr3 43101215 43101450 -174935708 - MIR SINE MIR -15 247 1 3265 308 112 35 chr3 43101504 43101909 -174935249 - L2 LINE L2 -12 3301 2929 2305 114 3 0 chr3 43101909 43102215 -174934943 + AluSp SINE Alu 1 307 -6 3265 308 112 35 chr3 43102215 43102352 -174934806 - L2 LINE L2 -384 2929 2804 1958 121 4 0 chr3 43102352 43102625 -174934533 - AluY SINE Alu -5 306 33 3265 308 112 35 chr3 43102625 43104173 -174932985 - L2 LINE L2 -509 2804 1039 243 299 15 15 chr3 43104398 43104465 -174932693 - L2 LINE L2 -9 3304 3238 305 352 99 58 chr3 43104679 43105245 -174931913 - L2 LINE L2 -340 2974 2386 978 298 63 19 chr3 43105270 43105699 -174931459 + MLT1J2 LTR MaLR 1 448 -2 191 298 226 44 chr3 43106029 43106458 -174930700 - L2 LINE L2 -1457 1857 1351 884 216 53 5 chr3 43107030 43107238 -174929920 - MER20 DNA MER1_type -1 218 1 437 238 57 29 chr3 43109524 43109734 -174927424 - MER69 DNA AcHobo -1 2525 2310 204 226 0 0 chr3 43109776 43109829 -174927329 + (TA)n Simple_repeat Simple_repeat 1 53 0 2648 259 100 33 chr3 43109889 43110881 -174926277 - MER69 DNA AcHobo -1460 1066 9 491 154 0 19 chr3 43110944 43111048 -174926110 + (TTCA)n Simple_repeat Simple_repeat 3 104 0 2172 101 0 7 chr3 43111158 43111446 -174925712 + AluSg SINE Alu 21 306 -4 2476 69 7 0 chr3 43112270 43112576 -174924582 - AluY SINE Alu -3 308 1 272 281 31 10 chr3 43113457 43113553 -174923605 - MER58C DNA MER1_type -6 209 112 182 207 17 0 chr3 43113571 43113629 -174923529 + CT-rich Low_complexity Low_complexity 3 61 0 415 291 24 0 chr3 43113642 43113769 -174923389 - MER58C DNA MER1_type -85 130 1 247 276 79 0 chr3 43113920 43113996 -174923162 - MIR SINE MIR -79 183 102 891 354 78 20 chr3 43114075 43114687 -174922471 - L2 LINE L2 -267 3046 2395 481 302 206 0 chr3 43114929 43115118 -174922040 + MIR SINE MIR 11 238 -24 231 232 11 21 chr3 43115133 43115228 -174921930 + CT-rich Low_complexity Low_complexity 2 95 0 1730 182 7 0 chr3 43115652 43115943 -174921215 - AluJo SINE Alu -8 304 12 5428 35 23 13 chr3 43116872 43117557 -174919601 - L1PA4 LINE L1 -1 6154 5463 331 294 103 57 chr3 43118259 43118453 -174918705 - MIR SINE MIR -3 259 57 902 314 124 33 chr3 43119493 43120434 -174916724 + L2 LINE L2 2264 3297 -16 896 170 0 12 chr3 43120439 43120604 -174916554 + L1PA16 LINE L1 6003 6165 -1 267 343 75 33 chr3 43120669 43120882 -174916276 - MIR SINE MIR -11 251 30 434 293 58 0 chr3 43121393 43121461 -174915697 + L1M4c LINE L1 1276 1339 -5045 1505 137 30 7 chr3 43121461 43121731 -174915427 + L1PA16 LINE L1 5888 6163 -3 434 293 58 0 chr3 43121731 43121853 -174915305 + L1M4c LINE L1 1339 1477 -4907 1495 247 81 36 chr3 43121904 43122435 -174914723 - MLT1E3 LTR MaLR 0 624 70 307 196 216 21 chr3 43122538 43122635 -174914523 + L1ME LINE L1 5703 5818 -346 501 245 264 19 chr3 43122647 43122859 -174914299 - L2 LINE L2 -2498 816 553 1553 110 252 139 chr3 43122863 43123528 -174913630 - LTR12 LTR ERV1 -133 2032 57 231 231 0 0 chr3 43123528 43123580 -174913578 - LTR30 LTR ERV1 -670 52 1 3675 99 4 0 chr3 43123580 43124113 -174913045 - HERV9 LTR ERV1 0 8399 7865 1830 103 13 32 chr3 43124110 43124893 -174912265 - HERV9 LTR ERV1 -5202 1694 711 * 1181 128 11 0 chr3 43124894 43125081 -174912077 - HERV9 LTR ERV1 -3455 4944 4756 * 19903 100 16 8 chr3 43125080 43128030 -174909128 - HERV9 LTR ERV1 -5427 2972 1 4312 85 172 42 chr3 43128030 43128761 -174908397 - LTR12 LTR ERV1 0 826 1 33 0 0 0 chr3 43130529 43130562 -174906596 + AT_rich Low_complexity Low_complexity 1 33 0 243 0 0 0 chr3 43131726 43131753 -174905405 + (T)n Simple_repeat Simple_repeat 1 27 0 215 133 80 0 chr3 43132233 43132308 -174904850 + (TA)n Simple_repeat Simple_repeat 1 81 0 695 221 55 44 chr3 43132595 43132776 -174904382 - MER63A DNA MER1_type -9 201 19 298 309 193 34 chr3 43132954 43133249 -174903909 - L2 LINE L2 -337 2977 2636 452 281 23 41 chr3 43133407 43133578 -174903580 - L2 LINE L2 -940 2374 2207 355 311 48 30 chr3 43133588 43133755 -174903403 - L2 LINE L2 -1065 2249 2080 6295 146 19 2 chr3 43133841 43134858 -174902300 + Tigger1 DNA MER2_type 1385 2418 0 312 289 64 45 chr3 43135366 43135678 -174901480 + L1M4 LINE L1 3390 3707 -2439 397 303 124 11 chr3 43135938 43136116 -174901042 - MIR SINE MIR -34 228 31 1070 268 89 66 chr3 43138227 43138619 -174898539 - MLT1H LTR MaLR -104 445 45 1665 222 40 31 chr3 43138931 43139377 -174897781 + LTR16A1 LTR ERVL 8 457 0 241 373 151 19 chr3 43139961 43140272 -174896886 + L2 LINE L2 2622 2973 -341 899 205 5 0 chr3 43140707 43140892 -174896266 - L1 LINE L1 -2157 3989 3804 * 1188 216 8 0 chr3 43140888 43141133 -174896025 + L1MA9 LINE L1 4645 4891 -1255 632 212 15 0 chr3 43141130 43141267 -174895891 + L1MA9 LINE L1 5324 5462 -706 * 1180 217 26 39 chr3 43141268 43141577 -174895581 + L1MA9 LINE L1 5971 6275 -37 942 308 26 24 chr3 43141914 43142330 -174894828 + LTR16B LTR ERVL 36 452 -12 922 219 153 142 chr3 43142342 43142907 -174894251 + L2 LINE L2 1731 2311 -1003 369 0 0 0 chr3 43142907 43142948 -174894210 + (CCAA)n Simple_repeat Simple_repeat 4 44 0 922 219 153 142 chr3 43142948 43143223 -174893935 + L2 LINE L2 2311 2581 -733 263 157 0 20 chr3 43143343 43143394 -174893764 + L2 LINE L2 3263 3312 -1 188 317 32 57 chr3 43143818 43143941 -174893217 + MIR SINE MIR 136 255 -7 285 325 107 30 chr3 43144228 43144425 -174892733 - L2 LINE L2 0 3313 3102 27 49 0 0 chr3 43144819 43144860 -174892298 + AT_rich Low_complexity Low_complexity 1 41 0 2079 45 8 0 chr3 43144945 43145211 -174891947 + L1PA4 LINE L1 5886 6153 -2 307 259 24 12 chr3 43146224 43146309 -174890849 - MIR SINE MIR -106 156 71 243 0 0 0 chr3 43150705 43150732 -174886426 + (TG)n Simple_repeat Simple_repeat 2 28 0 1699 190 49 0 chr3 43150881 43151207 -174885951 - MER2 DNA MER2_type -1 343 2 211 254 78 109 chr3 43151272 43151465 -174885693 - L2 LINE L2 -22 3291 3105 336 341 56 62 chr3 43151576 43151913 -174885245 - L2 LINE L2 -423 2891 2557 360 0 0 0 chr3 43152246 43152286 -174884872 + (TG)n Simple_repeat Simple_repeat 1 40 0 356 287 28 37 chr3 43153049 43153157 -174884001 + MIR SINE MIR 23 129 -133 1019 185 0 0 chr3 43153175 43153332 -174883826 - AluJ SINE Alu -23 289 133 300 110 14 123 chr3 43153332 43153405 -174883753 + L1M4 LINE L1 4216 4280 -1866 558 158 0 11 chr3 43153444 43153539 -174883619 - AluJ SINE Alu -180 132 39 301 304 44 37 chr3 43153541 43153676 -174883482 + MIR SINE MIR 117 252 -10 807 91 0 4 chr3 43153898 43154124 -174883034 + AluY SINE Alu 19 339 0 747 260 109 27 chr3 43154128 43154570 -174882588 - L1MC4 LINE L1 -60 7982 7505 900 176 14 56 chr3 43155186 43155402 -174881756 + MER3 DNA MER1_type 1 207 -2 319 339 122 17 chr3 43155968 43156148 -174881010 - MIR SINE MIR -33 229 31 309 26 0 0 chr3 43156267 43156305 -174880853 + (CA)n Simple_repeat Simple_repeat 1 38 0 1232 160 28 12 chr3 43156544 43156794 -174880364 - L1MB3 LINE L1 0 6183 5930 393 22 0 0 chr3 43156910 43156956 -174880202 + (TG)n Simple_repeat Simple_repeat 2 47 0 611 213 24 16 chr3 43158206 43158333 -174878825 + FLAM_A SINE Alu 1 128 -5 325 277 107 13 chr3 43159048 43159207 -174877951 - HAL1 LINE L1 -845 1662 1489 198 0 0 0 chr3 43159394 43159416 -174877742 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr3 43159534 43159563 -174877595 + AT_rich Low_complexity Low_complexity 1 29 0 678 275 82 46 chr3 43159967 43160272 -174876886 + LTR16C LTR ERVL 176 491 0 236 318 62 55 chr3 43161018 43161153 -174876005 + MIR SINE MIR 1 148 -60 186 167 0 0 chr3 43163811 43163847 -174873311 + CT-rich Low_complexity Low_complexity 4 39 0 2032 172 89 5 chr3 43163894 43164289 -174872869 - MSTA LTR MaLR 0 428 1 1717 264 133 60 chr3 43164494 43164557 -174872601 - L1MC4 LINE L1 0 8042 7985 7477 38 0 0 chr3 43164557 43165929 -174871229 + L1PA5 LINE L1 4780 6150 -4 1717 264 133 60 chr3 43165929 43167092 -174870066 - L1MC4 LINE L1 -57 7985 6727 363 301 19 0 chr3 43167092 43167195 -174869963 + MER58C DNA MER1_type 1 105 -110 377 242 0 33 chr3 43167259 43167350 -174869808 + MER58C DNA MER1_type 124 211 -4 359 304 108 14 chr3 43167350 43167412 -174869746 - L1MC4a LINE L1 -1208 6600 6545 3552 134 11 11 chr3 43167412 43167978 -174869180 + L1PA16 LINE L1 5593 6158 -8 359 304 108 14 chr3 43167978 43168209 -174868949 - L1MC4a LINE L1 -1263 6545 6400 453 279 145 28 chr3 43168267 43168694 -174868464 - L1MC4a LINE L1 -1384 6424 5948 26 0 0 0 chr3 43168764 43168790 -174868368 + AT_rich Low_complexity Low_complexity 1 26 0 1618 260 52 48 chr3 43168804 43169455 -174867703 - L1MC4a LINE L1 -1854 5954 5301 374 279 51 10 chr3 43169940 43170120 -174867038 + L1M4 LINE L1 5223 5411 -744 1931 187 93 35 chr3 43170123 43170605 -174866553 - MER67D LTR ERV1 -4 510 1 1390 242 88 92 chr3 43171840 43172279 -174864879 - L1ME3A LINE L1 -20 6150 5711 2161 104 27 3 chr3 43172279 43172578 -174864580 + AluSg SINE Alu 1 306 -4 1390 242 88 92 chr3 43172578 43172593 -174864565 - L1ME3A LINE L1 -459 5711 5697 3927 136 8 3 chr3 43172593 43173224 -174863934 - MER41B LTR ERV1 -1 634 1 1390 242 88 92 chr3 43173224 43173504 -174863654 - L1ME3A LINE L1 -473 5697 5416 1578 192 137 47 chr3 43173504 43173972 -174863186 + MER67D LTR ERV1 1 510 -4 1390 242 88 92 chr3 43173972 43174071 -174863087 - L1ME3A LINE L1 -754 5416 5318 26 0 0 0 chr3 43174077 43174103 -174863055 + AT_rich Low_complexity Low_complexity 1 26 0 1037 284 93 38 chr3 43174138 43175039 -174862119 - L1ME3A LINE L1 -1239 4907 3957 327 206 101 85 chr3 43176376 43176565 -174860593 + MER112 DNA MER1_type 68 259 -1 336 384 31 0 chr3 43176982 43177141 -174860017 - MIR SINE MIR -93 169 6 339 243 20 40 chr3 43177755 43177903 -174859255 - L1MC4a LINE L1 -1008 5138 4994 772 146 30 0 chr3 43177966 43178130 -174859028 + CT-rich Low_complexity Low_complexity 1 169 0 24 0 0 0 chr3 43178434 43178458 -174858700 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 43178983 43179018 -174858140 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr3 43179573 43179607 -174857551 + AT_rich Low_complexity Low_complexity 1 34 0 471 305 192 32 chr3 43181910 43182467 -174854691 + L2 LINE L2 1706 2351 -963 717 175 0 29 chr3 43182474 43182611 -174854547 - MLT1A2 LTR MaLR -241 133 1 184 313 0 45 chr3 43182954 43183021 -174854137 - MIR SINE MIR -109 153 90 187 218 23 81 chr3 43183115 43183202 -174853956 + L2 LINE L2 733 814 -2500 254 275 72 0 chr3 43183245 43183314 -174853844 + MIR SINE MIR 78 151 -111 26 64 0 0 chr3 43183939 43183986 -174853172 + AT_rich Low_complexity Low_complexity 1 47 0 202 326 236 0 chr3 43184845 43184989 -174852169 - MIR SINE MIR -13 249 72 329 305 55 8 chr3 43185228 43185356 -174851802 + MIR SINE MIR 29 162 -100 466 285 29 7 chr3 43185780 43185917 -174851241 - MIR SINE MIR -121 141 2 328 330 46 0 chr3 43185984 43186093 -174851065 - MIR SINE MIR -67 195 82 1752 230 127 19 chr3 43186232 43186706 -174850452 + MLT1H LTR MaLR 4 528 -21 428 77 15 0 chr3 43187088 43187153 -174850005 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 819 311 81 84 chr3 43187737 43188853 -174848305 - ERVL LTR ERVL -956 4808 3697 1049 220 0 22 chr3 43188902 43189125 -174848033 - MER20 DNA MER1_type -1 218 1 244 211 28 28 chr3 43189134 43189205 -174847953 - MER94 DNA DNA 0 134 64 1287 326 66 40 chr3 43189252 43189969 -174847189 - ERVL LTR ERVL -2118 3646 2912 1645 351 40 7 chr3 43190185 43191025 -174846133 - ERVL LTR ERVL -3108 2656 1789 16255 200 28 10 chr3 43191280 43196726 -174840432 - L1PA15 LINE L1 -20 6796 1243 206 269 0 0 chr3 43198355 43198407 -174838751 - MIR SINE MIR -49 213 162 239 296 112 26 chr3 43198814 43198930 -174838228 - MIR SINE MIR -60 148 30 220 196 0 54 chr3 43199203 43199259 -174837899 + CT-rich Low_complexity Low_complexity 2 54 0 580 206 83 21 chr3 43199766 43199950 -174837208 - MER39 LTR ERV1 -495 158 6 1034 298 76 39 chr3 43200105 43200515 -174836643 - MLT1J1 LTR MaLR -21 425 1 197 325 132 0 chr3 43201265 43201379 -174835779 - MIR3 SINE MIR -38 170 42 3956 146 8 51 chr3 43201882 43202083 -174835075 + L1MB2 LINE L1 5420 5628 -543 2111 136 120 8 chr3 43202083 43202466 -174834692 + MSTA LTR MaLR 3 428 0 3956 146 8 51 chr3 43202466 43203043 -174834115 + L1MB2 LINE L1 5628 6164 -7 223 213 66 0 chr3 43203296 43203357 -174833801 - MIR SINE MIR -55 207 143 568 290 29 51 chr3 43203855 43204131 -174833027 - L1ME1 LINE L1 -6 6160 5891 1100 258 60 8 chr3 43204138 43204507 -174832651 + L1ME1 LINE L1 2383 2770 -3376 4741 262 58 30 chr3 43204569 43207204 -174829954 + L1ME1 LINE L1 3401 6115 -51 21 36 0 0 chr3 43207231 43207259 -174829899 + AT_rich Low_complexity Low_complexity 1 28 0 1546 206 143 102 chr3 43207471 43208225 -174828933 + LTR1B LTR ERV1 1 826 0 783 246 75 39 chr3 43209545 43209826 -174827332 + LTR16A1 LTR ERVL 27 317 -140 1913 239 72 17 chr3 43209828 43210247 -174826911 + MLT2B1 LTR ERVL 1 442 -78 246 105 0 0 chr3 43210348 43210386 -174826772 + (CA)n Simple_repeat Simple_repeat 1 38 0 195 42 0 0 chr3 43210447 43210471 -174826687 + (TTCTC)n Simple_repeat Simple_repeat 4 27 0 271 243 0 27 chr3 43210477 43210551 -174826607 + LTR16A1 LTR ERVL 373 444 -13 202 261 0 14 chr3 43210644 43210713 -174826445 + CT-rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr3 43210890 43210914 -174826244 + AT_rich Low_complexity Low_complexity 1 24 0 5279 189 26 22 chr3 43210917 43212689 -174824469 - L1PA16 LINE L1 -11 6155 4381 1852 142 4 11 chr3 43212689 43212970 -174824188 - AluSx SINE Alu -33 279 1 5279 189 26 22 chr3 43212970 43213285 -174823873 - L1PA16 LINE L1 -1785 4381 4069 2191 96 0 7 chr3 43214249 43214531 -174822627 + AluSq SINE Alu 11 290 -23 382 248 145 55 chr3 43215155 43215466 -174821692 + LTR16C LTR ERVL 153 491 0 363 274 103 29 chr3 43215503 43215678 -174821480 + LTR16C LTR ERVL 301 488 -3 1707 176 24 0 chr3 43215806 43216095 -174821063 + AluJb SINE Alu 3 298 -14 2206 125 0 0 chr3 43216657 43216979 -174820179 + AluSx SINE Alu 1 322 0 870 221 9 28 chr3 43217382 43217599 -174819559 + L1ME3A LINE L1 5956 6168 -2 338 260 161 37 chr3 43217602 43217875 -174819283 + L1M4 LINE L1 5015 5321 -825 857 251 107 78 chr3 43217877 43218011 -174819147 + MLT1H LTR MaLR 87 216 -333 2140 103 4 4 chr3 43218011 43218319 -174818839 - AluSc SINE Alu 0 308 1 857 251 107 78 chr3 43218319 43218633 -174818525 + MLT1H LTR MaLR 216 549 0 324 0 0 0 chr3 43218688 43218724 -174818434 + (CA)n Simple_repeat Simple_repeat 1 36 0 1696 279 66 10 chr3 43220211 43220695 -174816463 + MLT1H LTR MaLR 3 513 -36 4249 66 2 25 chr3 43220695 43221286 -174815872 + L1PA8A LINE L1 5306 5882 -249 2691 194 24 26 chr3 43221284 43221948 -174815210 - L1 LINE L1 -814 5514 4852 * 6458 207 40 19 chr3 43221943 43221967 -174815191 - L1 LINE L1 -3572 2756 2734 2393 125 11 0 chr3 43221967 43222318 -174814840 - THE1A LTR MaLR 0 355 1 6458 207 40 19 chr3 43222318 43224992 -174812166 - L1 LINE L1 -3594 2734 3 2543 249 85 4 chr3 43224993 43225760 -174811398 - L1M4 LINE L1 -943 5701 4873 * 4742 238 101 23 chr3 43225751 43228727 -174808431 - L1M4 LINE L1 -2134 4510 1307 324 141 0 47 chr3 43228740 43228868 -174808290 + (TA)n Simple_repeat Simple_repeat 1 122 0 1389 254 82 87 chr3 43228873 43229363 -174807795 - L1M4 LINE L1 -5330 1212 721 216 0 0 0 chr3 43229363 43229387 -174807771 + (TA)n Simple_repeat Simple_repeat 2 25 0 1389 254 82 87 chr3 43229387 43230165 -174806993 - L1M4 LINE L1 -5821 721 1 229 241 48 12 chr3 43230224 43230307 -174806851 - L1P5 LINE L1 -705 5451 5366 390 288 97 44 chr3 43230317 43230543 -174806615 - L1M4 LINE L1 -832 5314 5077 48 60 0 0 chr3 43230564 43230647 -174806511 + AT_rich Low_complexity Low_complexity 1 83 0 202 172 17 17 chr3 43231017 43231075 -174806083 + (TTTAA)n Simple_repeat Simple_repeat 2 59 0 193 132 19 19 chr3 43231110 43231163 -174805995 + (TA)n Simple_repeat Simple_repeat 1 53 0 443 337 139 5 chr3 43233125 43233327 -174803831 + MIR SINE MIR 21 249 -13 621 320 79 8 chr3 43233647 43234153 -174803005 + L1MC4a LINE L1 4070 4611 -1535 24 0 0 0 chr3 43234636 43234660 -174802498 + AT_rich Low_complexity Low_complexity 1 24 0 342 318 112 14 chr3 43234750 43235173 -174801985 + L1MC4a LINE L1 5424 5657 -464 5240 209 25 24 chr3 43235341 43237000 -174800158 - L1MC1 LINE L1 0 6333 4678 1964 177 7 47 chr3 43237000 43237406 -174799752 - MLT1B LTR MaLR 0 390 1 5240 209 25 24 chr3 43237406 43237449 -174799709 - L1MC1 LINE L1 -1655 4678 4637 2286 142 15 88 chr3 43237449 43237810 -174799348 + Tigger2a DNA MER2_type 1 322 -2386 1864 141 18 0 chr3 43237810 43238093 -174799065 + AluSx SINE Alu 1 288 -24 2286 142 15 88 chr3 43238093 43238197 -174798961 + Tigger2a DNA MER2_type 322 432 -2 5240 209 25 24 chr3 43238197 43238533 -174798625 - L1MC1 LINE L1 -1696 4637 4302 1477 179 40 86 chr3 43238533 43238710 -174798448 + MLT1B LTR MaLR 1 156 -234 2030 137 13 0 chr3 43238710 43239017 -174798141 - AluSx SINE Alu -1 311 1 1477 179 40 86 chr3 43239017 43239188 -174797970 + MLT1B LTR MaLR 156 333 -57 4515 147 16 17 chr3 43239188 43239959 -174797199 - LTR1 LTR ERV1 0 785 16 359 153 0 0 chr3 43239957 43240016 -174797142 + MLT1B LTR MaLR 330 388 -2 * 2911 147 10 19 chr3 43242140 43242622 -174794536 - MER66A LTR ERV1 0 478 1 577 325 57 29 chr3 43243947 43244227 -174792931 + L2 LINE L2 2596 2883 -431 1187 335 32 3 chr3 43244237 43244613 -174792545 + LTR16C LTR ERVL 4 390 -101 3472 51 0 7 chr3 43244615 43245066 -174792092 - LTR7 LTR ERV1 -2 448 1 2396 84 47 16 chr3 43245066 43245446 -174791712 - HERVH LTR ERV1 0 7713 7322 1304 129 20 0 chr3 43245444 43245645 -174791513 - HERVH LTR ERV1 -1894 5819 5615 * 2570 163 0 0 chr3 43245679 43246090 -174791068 - HERVH LTR ERV1 -2564 5149 4739 925 162 0 7 chr3 43246088 43246242 -174790916 - HERVH LTR ERV1 -4069 3644 3492 * 899 122 27 0 chr3 43246232 43246379 -174790779 - HERVH LTR ERV1 -4423 3290 3140 * 1650 131 0 25 chr3 43246358 43246641 -174790517 - HERVH LTR ERV1 -4718 2995 2720 286 289 13 0 chr3 43246642 43246718 -174790440 + LTR16C LTR ERVL 415 491 0 21 0 0 0 chr3 43246942 43246963 -174790195 + AT_rich Low_complexity Low_complexity 1 21 0 28 95 0 0 chr3 43247266 43247350 -174789808 + AT_rich Low_complexity Low_complexity 1 84 0 1084 274 26 39 chr3 43247394 43247851 -174789307 + L1MD2 LINE L1 3171 3621 -2525 483 115 164 8 chr3 43247824 43247946 -174789212 + L1MDa LINE L1 2451 2591 -3949 * 1651 253 25 20 chr3 43247943 43248496 -174788662 + L1MD2 LINE L1 4275 4830 -1710 901 269 97 7 chr3 43248592 43248901 -174788257 + MER2 DNA MER2_type 9 345 0 3261 230 87 34 chr3 43248901 43249391 -174787767 + L1MD2 LINE L1 4833 5295 -1458 270 0 0 0 chr3 43249391 43249421 -174787737 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3261 230 87 34 chr3 43249421 43250068 -174787090 + L1MD2 LINE L1 5295 5906 -847 869 166 6 6 chr3 43250068 43250237 -174786921 + L1MA10 LINE L1 6163 6331 -3 3261 230 87 34 chr3 43250237 43250899 -174786259 + L1MD2 LINE L1 5906 6734 -19 1633 205 3 0 chr3 43251148 43251441 -174785717 - AluJo SINE Alu -14 298 5 47 44 0 0 chr3 43251662 43251730 -174785428 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 0 chr3 43251765 43251788 -174785370 + AT_rich Low_complexity Low_complexity 1 23 0 254 315 139 12 chr3 43253076 43253241 -174783917 - MIR SINE MIR 0 262 77 253 281 94 31 chr3 43253523 43253619 -174783539 + L2 LINE L2 3203 3304 -9 186 290 130 0 chr3 43254165 43254234 -174782924 - MIR3 SINE MIR 0 208 131 1127 148 23 0 chr3 43254762 43254979 -174782179 - L1MA4 LINE L1 -5 6295 6074 331 274 55 14 chr3 43255303 43255449 -174781709 - L1ME3A LINE L1 -20 6150 5999 226 328 0 0 chr3 43256496 43256557 -174780601 + CT-rich Low_complexity Low_complexity 3 63 0 195 203 0 0 chr3 43256965 43257024 -174780134 + (TA)n Simple_repeat Simple_repeat 1 59 0 7959 10 0 0 chr3 43257026 43258185 -174778973 - L1HS LINE L1 -2 6153 4995 * 22448 23 0 0 chr3 43258182 43260849 -174776309 + L1HS LINE L1 2314 4980 -1166 181 164 18 18 chr3 43261227 43261282 -174775876 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 36 0 0 chr3 43261306 43261334 -174775824 + AT_rich Low_complexity Low_complexity 1 28 0 585 254 83 16 chr3 43261396 43261589 -174775569 + MIR SINE MIR 55 260 -2 246 242 22 55 chr3 43261629 43261720 -174775438 - L1ME3A LINE L1 -2306 5502 5415 3292 135 2 38 chr3 43261791 43262368 -174774790 - L1PA15 LINE L1 -6 6159 5604 22 35 0 0 chr3 43262454 43262483 -174774675 + AT_rich Low_complexity Low_complexity 1 29 0 289 306 112 15 chr3 43262708 43262914 -174774244 + L1MC/D LINE L1 5598 5823 -1985 1493 144 125 13 chr3 43263025 43263330 -174773828 - MER44D DNA MER2_type 0 609 1 594 311 170 45 chr3 43263527 43264033 -174773125 - L1ME3A LINE L1 -1162 4984 4543 1874 163 3 7 chr3 43264033 43264334 -174772824 - AluSx SINE Alu -11 301 2 594 311 170 45 chr3 43264334 43264644 -174772514 - L1ME3A LINE L1 -1603 4543 4066 2268 72 14 0 chr3 43264658 43264950 -174772208 - AluY SINE Alu -15 296 1 459 211 44 44 chr3 43265158 43265272 -174771886 + FLAM_C SINE Alu 13 126 -17 422 274 54 62 chr3 43266122 43266363 -174770795 - L2 LINE L2 -2 3311 3073 397 361 72 6 chr3 43266620 43266800 -174770358 - MIR3 SINE MIR -7 201 10 188 352 9 9 chr3 43266900 43267005 -174770153 - MIR SINE MIR -10 252 148 3695 186 53 3 chr3 43267324 43268065 -174769093 - L1MC2 LINE L1 -22 6322 5545 367 345 94 23 chr3 43268062 43268497 -174768661 - L1ME LINE L1 -348 5822 5357 * 520 267 131 10 chr3 43268561 43268767 -174768391 - MIR SINE MIR 0 262 32 1906 156 29 73 chr3 43269311 43269679 -174767479 - L1MA6 LINE L1 -6 6294 5944 2032 124 3 0 chr3 43269679 43269962 -174767196 - AluSx SINE Alu -28 284 1 1906 156 29 73 chr3 43269962 43270004 -174767154 - L1MA6 LINE L1 -356 5944 5902 234 319 34 34 chr3 43269999 43270203 -174766955 - L1ME LINE L1 -1460 4686 4483 * 1848 137 14 73 chr3 43270325 43270682 -174766476 - MER1B DNA MER1_type 0 337 2 180 0 0 0 chr3 43270990 43271010 -174766148 + (TG)n Simple_repeat Simple_repeat 2 21 0 937 153 0 7 chr3 43271187 43271337 -174765821 - L1M1 LINE L1 -6634 931 783 3227 190 82 9 chr3 43271411 43272295 -174764863 - L1M LINE L1 -745 5401 4472 19223 172 56 22 chr3 43272298 43274874 -174762284 + L1M1 LINE L1 13 2500 -5065 2074 96 24 20 chr3 43274874 43275167 -174761991 + AluSg1 SINE Alu 1 294 -15 19223 172 56 22 chr3 43275167 43276290 -174760868 + L1M1 LINE L1 2500 3583 -3982 2122 132 0 0 chr3 43276290 43276593 -174760565 + AluSq SINE Alu 10 312 -1 19223 172 56 22 chr3 43276593 43278375 -174758783 + L1M1 LINE L1 3583 5688 -1877 2290 86 0 3 chr3 43278379 43278682 -174758476 + AluY SINE Alu 1 302 -9 5754 90 32 6 chr3 43278700 43279545 -174757613 + L1MA1 LINE L1 5432 6298 -4 961 260 124 49 chr3 43280529 43280995 -174756163 + MLT1H LTR MaLR 9 509 -40 25 31 0 0 chr3 43281248 43281280 -174755878 + AT_rich Low_complexity Low_complexity 1 32 0 301 226 81 65 chr3 43281352 43281476 -174755682 - L1ME4a LINE L1 -5 6116 5991 198 118 0 0 chr3 43281615 43281649 -174755509 + (CA)n Simple_repeat Simple_repeat 1 34 0 180 152 0 0 chr3 43282701 43282734 -174754424 + GA-rich Low_complexity Low_complexity 3 35 0 377 316 60 0 chr3 43282758 43282926 -174754232 + Charlie8 DNA MER1_type 100 277 -2140 651 213 143 71 chr3 43283321 43283712 -174753446 + LTR30 LTR ERV1 238 587 -9 21276 276 32 35 chr3 43283723 43290339 -174746819 + HERV3 LTR ERV1 1 6594 -1832 631 260 95 38 chr3 43290782 43291185 -174745973 + LTR30 LTR ERV1 112 493 0 736 182 16 0 chr3 43291227 43291348 -174745810 + FLAM_A SINE Alu 1 123 -10 826 233 33 38 chr3 43291657 43291867 -174745291 - MER63A DNA MER1_type 0 210 2 461 270 147 21 chr3 43291988 43292310 -174744848 + MLT1G LTR MaLR 170 588 -2 1255 281 41 20 chr3 43293195 43293962 -174743196 - L1ME LINE L1 -669 5497 4719 370 165 44 11 chr3 43294005 43294096 -174743062 - L1MA6 LINE L1 0 6300 6207 447 180 46 1 chr3 43294096 43294193 -174742965 + L1MA6 LINE L1 5986 6085 -215 202 70 0 47 chr3 43294261 43294304 -174742854 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 855 71 0 0 chr3 43294306 43294418 -174742740 - L1PB1 LINE L1 -13 6138 6027 1209 140 145 4 chr3 43294450 43294685 -174742473 + MLT1B LTR MaLR 123 390 0 210 279 241 0 chr3 43295152 43295231 -174741927 - MER5A DNA MER1_type -83 106 9 351 0 0 0 chr3 43295612 43295651 -174741507 + (TA)n Simple_repeat Simple_repeat 2 40 0 200 135 0 19 chr3 43296020 43296072 -174741086 + (TA)n Simple_repeat Simple_repeat 2 52 0 1161 232 23 68 chr3 43296097 43296451 -174740707 + MLT1A2 LTR MaLR 37 374 0 2546 230 85 0 chr3 43296451 43297051 -174740107 + MLT1A2-int LTR MaLR 1 651 -1084 495 153 46 69 chr3 43297081 43297212 -174739946 + MLT1B LTR MaLR 229 356 -34 1171 191 80 78 chr3 43297614 43298001 -174739157 + MLT1B LTR MaLR 1 388 -2 435 178 22 49 chr3 43298527 43298712 -174738446 + CT-rich Low_complexity Low_complexity 1 180 0 2367 96 3 0 chr3 43298714 43299016 -174738142 - AluSp SINE Alu -7 306 4 203 179 0 0 chr3 43299032 43299071 -174738087 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 213 211 0 19 chr3 43299461 43299513 -174737645 + CT-rich Low_complexity Low_complexity 2 52 0 330 294 106 17 chr3 43299910 43300090 -174737068 - MIR SINE MIR -32 230 35 641 275 109 22 chr3 43300253 43300482 -174736676 - MIR SINE MIR -13 249 1 1998 124 0 27 chr3 43300596 43300895 -174736263 - AluSx SINE Alu -16 296 6 545 227 40 0 chr3 43301530 43301680 -174735478 - MER3 DNA MER1_type -87 122 14 608 354 48 15 chr3 43301827 43302163 -174734995 + MLT1I LTR MaLR 63 409 0 1674 247 21 5 chr3 43303268 43303984 -174733174 + L1M4c LINE L1 2097 2825 -3557 316 125 0 0 chr3 43303993 43304041 -174733117 - L1P LINE L1 -796 5367 5320 4560 124 48 3 chr3 43304043 43304795 -174732363 + L1PA13 LINE L1 5374 6159 -4 290 173 13 27 chr3 43304810 43304885 -174732273 + L1M4c LINE L1 2811 2884 -3498 1952 155 33 41 chr3 43304885 43305252 -174731906 - THE1B LTR MaLR 0 364 1 10662 103 10 42 chr3 43305252 43305313 -174731845 - THE1B-int LTR MaLR 0 1580 1519 268 125 0 0 chr3 43305313 43305353 -174731805 + tRNA-Gly-GGA tRNA tRNA 1 40 -35 10662 103 10 42 chr3 43305353 43306441 -174730717 - THE1B-int LTR MaLR -61 1519 454 2108 144 0 3 chr3 43306441 43306754 -174730404 - AluSp SINE Alu -1 312 1 10662 103 10 42 chr3 43306754 43307195 -174729963 - THE1B-int LTR MaLR -1126 454 1 1724 161 38 52 chr3 43307197 43307564 -174729594 - THE1B LTR MaLR -2 362 1 687 152 0 198 chr3 43307564 43307827 -174729331 + L1M4c LINE L1 2880 3090 -3292 183 218 0 0 chr3 43307907 43307962 -174729196 + (TA)n Simple_repeat Simple_repeat 1 55 0 27 0 0 0 chr3 43307962 43307989 -174729169 + AT_rich Low_complexity Low_complexity 1 27 0 485 97 79 0 chr3 43307992 43308157 -174729001 + (TA)n Simple_repeat Simple_repeat 1 178 0 212 96 77 0 chr3 43308159 43308211 -174728947 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 593 144 27 10 chr3 43308213 43308517 -174728641 + (TA)n Simple_repeat Simple_repeat 1 309 0 307 277 27 45 chr3 43308519 43308631 -174728527 - L1MC4 LINE L1 -1340 6702 6593 579 95 66 5 chr3 43308638 43309048 -174728110 + (TA)n Simple_repeat Simple_repeat 1 435 0 306 241 0 38 chr3 43309480 43309559 -174727599 - MER58C DNA MER1_type -16 199 124 363 301 19 0 chr3 43309624 43309727 -174727431 - MER58C DNA MER1_type -110 105 1 1590 267 139 56 chr3 43309727 43310879 -174726279 + L1MC4 LINE L1 6727 7974 -68 7424 39 0 0 chr3 43310890 43312011 -174725147 - L1PA5 LINE L1 -4 6150 5031 288 133 0 0 chr3 43312123 43312183 -174724975 + (C)n Simple_repeat Simple_repeat 1 60 0 212 344 8 16 chr3 43312227 43312355 -174724803 + CT-rich Low_complexity Low_complexity 2 128 0 856 299 134 43 chr3 43312941 43313693 -174723465 - L1M4 LINE L1 -5721 821 1 364 290 81 54 chr3 43313849 43314070 -174723088 - L1M4 LINE L1 -843 5303 5077 48 60 0 0 chr3 43314091 43314174 -174722984 + AT_rich Low_complexity Low_complexity 1 83 0 43 75 0 0 chr3 43314501 43314581 -174722577 + GC_rich Low_complexity Low_complexity 1 80 0 388 206 27 54 chr3 43314581 43314765 -174722393 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 23 87 0 0 chr3 43314787 43314833 -174722325 + GC_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr3 43315532 43315564 -174721594 + AT_rich Low_complexity Low_complexity 1 32 0 229 220 0 17 chr3 43315650 43315709 -174721449 - tRNA-Lys-AAA tRNA tRNA -13 63 6 383 218 129 68 chr3 43316602 43316792 -174720366 - AluSg SINE Alu -197 103 2 421 127 66 0 chr3 43317208 43317374 -174719784 + (TA)n Simple_repeat Simple_repeat 1 177 0 81 0 0 0 chr3 43317374 43317455 -174719703 + AT_rich Low_complexity Low_complexity 1 81 0 638 116 64 2 chr3 43317455 43317992 -174719166 + (TA)n Simple_repeat Simple_repeat 1 570 0 21 0 0 0 chr3 43318327 43318348 -174718810 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 43318946 43318977 -174718181 + AT_rich Low_complexity Low_complexity 1 31 0 5153 118 85 0 chr3 43319318 43320507 -174716651 + L1PA11 LINE L1 4917 6174 0 399 307 127 36 chr3 43320716 43321048 -174716110 + MLT1J1 LTR MaLR 11 372 -74 2085 141 0 0 chr3 43321105 43321411 -174715747 - AluSx SINE Alu -6 306 1 298 352 56 50 chr3 43321489 43321969 -174715189 - L2 LINE L2 -882 2432 1950 427 246 132 0 chr3 43322002 43322116 -174715042 - MER94 DNA DNA -5 129 1 352 390 60 39 chr3 43323843 43323926 -174713232 + L2 LINE L2 2368 2448 -866 1973 95 4 4 chr3 43323926 43324199 -174712959 + AluSc SINE Alu 1 273 -36 321 26 0 0 chr3 43324199 43324237 -174712921 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 352 390 60 39 chr3 43324237 43324503 -174712655 + L2 LINE L2 2448 2729 -585 2307 94 0 3 chr3 43324503 43324810 -174712348 - AluSc SINE Alu -3 306 1 352 390 60 39 chr3 43324810 43324843 -174712315 + L2 LINE L2 2729 2760 -554 1475 234 116 46 chr3 43324855 43325373 -174711785 + MLT2B3 LTR ERVL 1 554 0 1641 144 89 0 chr3 43325455 43325725 -174711433 - AluSx SINE Alu -18 294 1 279 371 153 33 chr3 43325770 43326045 -174711113 + L2 LINE L2 3006 3313 0 183 170 21 106 chr3 43326403 43326450 -174710708 - MIR SINE MIR -150 112 70 622 229 201 6 chr3 43326980 43327159 -174709999 + MER20 DNA MER1_type 1 214 -5 249 254 48 0 chr3 43327213 43327276 -174709882 + MIR SINE MIR 66 131 -131 2202 135 25 28 chr3 43328516 43328916 -174708242 - LTR23 LTR ERV1 -38 399 1 618 245 14 0 chr3 43328916 43329063 -174708095 - LTR23-int LTR ERV1 0 5123 4975 215 303 0 13 chr3 43329147 43329223 -174707935 - L2 LINE L2 -1081 2233 2159 202 211 26 0 chr3 43329291 43329329 -174707829 - L2 LINE L2 -13 3300 3262 236 328 64 35 chr3 43329425 43329596 -174707562 - MIR SINE MIR -86 176 1 227 333 106 0 chr3 43329972 43330161 -174706997 - HAL1 LINE L1 -869 1638 1430 * 388 30 30 25 chr3 43330141 43330207 -174706951 - L1PA13 LINE L1 -83 6078 6018 652 85 0 0 chr3 43330209 43330303 -174706855 + L1PA13 LINE L1 6067 6160 -3 343 335 37 50 chr3 43330448 43330690 -174706468 - HAL1 LINE L1 -1232 1275 1037 275 268 119 55 chr3 43331305 43331615 -174705543 + L1M4 LINE L1 4518 4847 -1299 1994 149 37 16 chr3 43332694 43333070 -174704088 - L1MA3 LINE L1 -1 6304 5921 795 260 12 6 chr3 43334129 43334298 -174702860 + MER45A DNA AcHobo 9 178 0 345 295 52 24 chr3 43336168 43336312 -174700846 + MIR SINE MIR 20 163 -45 441 390 56 17 chr3 43336337 43336568 -174700590 + L2 LINE L2 2437 2676 -638 189 0 0 0 chr3 43337069 43337090 -174700068 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 316 339 92 50 chr3 43337536 43337754 -174699404 + L2 LINE L2 3032 3258 -14 823 313 0 27 chr3 43338774 43339030 -174698128 + MIR SINE MIR 14 262 0 277 392 54 8 chr3 43339068 43339198 -174697960 + L2 LINE L2 3125 3260 -12 215 221 63 84 chr3 43339175 43339270 -174697888 - MIR3 SINE MIR -6 202 110 * 2300 110 0 0 chr3 43339625 43339924 -174697234 + AluSg SINE Alu 11 309 -1 294 299 17 34 chr3 43340127 43340244 -174696914 - MIR SINE MIR -116 146 32 610 191 107 0 chr3 43340400 43340531 -174696627 + L1MEc LINE L1 35 179 -6217 1996 225 57 64 chr3 43340535 43341296 -174695862 + L1M4 LINE L1 3949 4703 -1443 2154 113 0 10 chr3 43341298 43341599 -174695559 + AluSc SINE Alu 1 298 -11 629 250 140 0 chr3 43341627 43341791 -174695367 + L1PA15 LINE L1 14 200 -7381 * 1168 187 4 17 chr3 43341789 43342030 -174695128 + L1PA15 LINE L1 2828 3065 -4509 7426 191 18 13 chr3 43342040 43343155 -174694003 + L1PA15 LINE L1 5029 6156 -1428 216 0 0 0 chr3 43343155 43343179 -174693979 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7426 191 18 13 chr3 43343179 43343650 -174693508 + L1PA15 LINE L1 6156 6623 -961 22567 171 33 32 chr3 43343658 43345693 -174691465 + L1PA10 LINE L1 35 2066 -4417 2107 132 3 7 chr3 43345693 43345996 -174691162 - AluSq SINE Alu -11 302 1 22567 171 33 32 chr3 43345996 43350282 -174686876 + L1PA10 LINE L1 2066 6446 -37 558 29 0 0 chr3 43350287 43350355 -174686803 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 5227 140 22 15 chr3 43350355 43351338 -174685820 + L1PA15 LINE L1 6615 7599 -4 1612 239 53 23 chr3 43351332 43351939 -174685219 + L1ME1 LINE L1 4695 5319 -827 * 936 169 12 12 chr3 43351951 43352117 -174685041 + FRAM SINE Alu 1 165 -11 2368 254 82 11 chr3 43352130 43352952 -174684206 + L1ME1 LINE L1 5298 6334 0 428 280 19 79 chr3 43354345 43354559 -174682599 + L2 LINE L2 3108 3308 -5 415 325 38 0 chr3 43354623 43354780 -174682378 - LTR16B LTR ERVL -301 163 1 279 224 28 149 chr3 43355440 43355502 -174681656 - L2 LINE L2 -25 3247 3202 654 135 0 0 chr3 43355502 43355606 -174681552 + L1PB4 LINE L1 6053 6156 0 279 224 28 149 chr3 43355606 43355650 -174681508 - L2 LINE L2 -70 3202 3154 315 292 182 24 chr3 43355794 43356003 -174681155 + MIR SINE MIR 1 242 -20 427 341 56 14 chr3 43356863 43357077 -174680081 - MER90 LTR ERV1 -202 412 190 200 330 59 17 chr3 43357382 43357500 -174679658 + L2 LINE L2 2658 2780 -534 282 318 37 28 chr3 43359021 43359128 -174678030 + L2 LINE L2 2651 2758 -556 311 206 500 0 chr3 43359432 43359558 -174677600 - MER5A DNA MER1_type 0 189 1 199 333 0 0 chr3 43359788 43359857 -174677301 + MIR SINE MIR 150 218 -44 315 244 15 82 chr3 43360431 43360566 -174676592 - LTR16C LTR ERVL 0 491 366 2408 79 0 7 chr3 43360619 43360923 -174676235 - AluY SINE Alu -8 303 2 214 303 185 17 chr3 43361215 43361393 -174675765 - MIR SINE MIR -51 211 4 21 71 0 0 chr3 43361717 43361759 -174675399 + AT_rich Low_complexity Low_complexity 1 42 0 11049 216 66 29 chr3 43362045 43365469 -174671689 + L1PA16 LINE L1 2009 5604 -562 183 42 0 0 chr3 43365469 43365493 -174671665 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 11049 216 66 29 chr3 43365493 43366078 -174671080 + L1PA16 LINE L1 5604 6166 0 225 281 0 18 chr3 43366308 43366365 -174670793 - MLT2F LTR ERVL -502 161 106 1851 191 0 9 chr3 43366850 43367165 -174669993 + AluJo SINE Alu 1 312 0 24 53 0 0 chr3 43367817 43367855 -174669303 + AT_rich Low_complexity Low_complexity 1 38 0 2804 10 0 3 chr3 43367893 43368203 -174668955 - AluYa5 SINE Alu -2 309 1 773 305 72 72 chr3 43369139 43369641 -174667517 - MLT1J LTR MaLR -9 502 1 470 235 33 33 chr3 43369845 43370028 -174667130 + HAL1b LINE L1 665 847 -501 18151 191 85 31 chr3 43370818 43375947 -174661211 + L1P3 LINE L1 5 5426 -1035 692 92 0 0 chr3 43375955 43376042 -174661116 + L1PA4 LINE L1 12 98 -6048 * 38253 52 4 3 chr3 43376040 43381560 -174655598 + L1PA4 LINE L1 623 6163 -170 6202 103 10 0 chr3 43381560 43382614 -174654544 + L1PA10 LINE L1 5098 6164 -4 38253 52 4 3 chr3 43382614 43382786 -174654372 + L1PA4 LINE L1 6163 6333 0 26 30 0 0 chr3 43384324 43384357 -174652801 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 43384367 43384395 -174652763 + AT_rich Low_complexity Low_complexity 1 28 0 2009 137 35 29 chr3 43384397 43384740 -174652418 + THE1B LTR MaLR 1 345 -19 5846 122 7 9 chr3 43384740 43385592 -174651566 + THE1B-int LTR MaLR 3 852 -728 26 30 0 0 chr3 43386185 43386218 -174650940 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 43386228 43386256 -174650902 + AT_rich Low_complexity Low_complexity 1 28 0 1984 140 35 29 chr3 43386258 43386601 -174650557 + THE1B LTR MaLR 1 345 -19 633 85 28 19 chr3 43386601 43386707 -174650451 + THE1B-int LTR MaLR 3 109 -1471 9373 40 0 0 chr3 43388456 43389602 -174647556 + L1P LINE L1 1689 2834 -3312 260 271 9 6 chr3 43390216 43390326 -174646832 - MER5A DNA MER1_type -6 183 10 966 194 71 8 chr3 43390345 43390613 -174646545 + MER33 DNA MER1_type 4 288 -36 194 297 31 0 chr3 43390631 43390695 -174646463 - MER5A DNA MER1_type 0 189 124 723 247 41 0 chr3 43390788 43390958 -174646200 - MER5A DNA MER1_type 0 189 13 280 259 0 14 chr3 43391729 43391845 -174645313 - MER5A DNA MER1_type 0 189 10 256 294 92 98 chr3 43392840 43393024 -174644134 - L2 LINE L2 0 3272 3090 594 324 28 6 chr3 43393074 43393256 -174643902 - MIR SINE MIR -10 252 67 303 213 27 27 chr3 43393348 43393423 -174643735 - L2 LINE L2 -12 3260 3186 2298 84 3 3 chr3 43393461 43393759 -174643399 + AluSc SINE Alu 1 298 -11 180 0 0 0 chr3 43394052 43394072 -174643086 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr3 43394072 43394095 -174643063 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 43394109 43394132 -174643026 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 43394142 43394166 -174642992 + GC_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 43394180 43394206 -174642952 + GC_rich Low_complexity Low_complexity 1 26 0 1628 151 60 28 chr3 43398139 43398424 -174638734 + AluSx SINE Alu 2 295 -17 303 288 112 53 chr3 43398718 43398888 -174638270 - L2 LINE L2 -1 3312 3133 994 305 25 25 chr3 43398909 43399273 -174637885 - MLT1H LTR MaLR -2 547 184 268 236 9 9 chr3 43399907 43400013 -174637145 + (TA)n Simple_repeat Simple_repeat 1 106 0 2259 163 3 8 chr3 43400017 43400386 -174636772 + THE1C-int LTR MaLR 1086 1452 -128 944 34 62 34 chr3 43400575 43400721 -174636437 + THE1C-int LTR MaLR 1431 1580 0 2431 94 42 8 chr3 43400721 43401082 -174636076 + THE1C LTR MaLR 1 373 -2 272 236 11 0 chr3 43401083 43401172 -174635986 + (TA)n Simple_repeat Simple_repeat 2 91 0 576 278 114 0 chr3 43402537 43402713 -174634445 + MIR SINE MIR 67 262 0 303 203 29 14 chr3 43402802 43402871 -174634287 - MIR3 SINE MIR -25 183 114 21 36 0 0 chr3 43403661 43403689 -174633469 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr3 43404334 43404376 -174632782 + AT_rich Low_complexity Low_complexity 1 42 0 180 361 16 25 chr3 43404437 43404559 -174632599 + MIR3 SINE MIR 85 205 -3 237 65 0 0 chr3 43405142 43405173 -174631985 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1227 192 95 32 chr3 43408472 43408810 -174628348 + MLT1A1 LTR MaLR 5 363 -2 6874 216 82 37 chr3 43408810 43410462 -174626696 + MLT1A1-int LTR MaLR 3 1729 -6 1402 162 110 55 chr3 43410467 43410813 -174626345 + MLT1A1 LTR MaLR 1 365 0 204 40 0 0 chr3 43411004 43411029 -174626129 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 401 324 71 0 chr3 43411506 43411676 -174625482 - MIR SINE MIR -6 256 75 1767 214 20 8 chr3 43411687 43412043 -174625115 - MLT1A1 LTR MaLR -5 360 1 236 207 17 17 chr3 43412899 43412957 -174624201 + CT-rich Low_complexity Low_complexity 1 58 0 924 114 0 0 chr3 43412997 43413137 -174624021 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 251 120 0 40 chr3 43413137 43413187 -174623971 + (TTTTC)n Simple_repeat Simple_repeat 1 48 0 622 205 21 156 chr3 43413237 43413577 -174623581 - MER58B DNA MER1_type 0 341 45 1486 197 91 19 chr3 43413829 43414190 -174622968 - MLT1B LTR MaLR -3 387 1 954 144 39 6 chr3 43414208 43414389 -174622769 + MER96B DNA MER1_type? 49 235 -182 190 263 0 53 chr3 43414894 43414951 -174622207 - MIR SINE MIR -123 139 86 315 353 108 6 chr3 43416041 43416208 -174620950 + MIR SINE MIR 8 191 -71 363 183 158 0 chr3 43416208 43416290 -174620868 + MER69A DNA AcHobo 19 113 -64 234 288 0 0 chr3 43416640 43416699 -174620459 - L2 LINE L2 -1741 1573 1515 630 342 8 23 chr3 43416729 43416986 -174620172 - MIR SINE MIR -8 254 2 931 325 118 37 chr3 43417301 43417483 -174619675 - L2 LINE L2 -1979 1335 1169 2237 121 19 19 chr3 43417483 43417847 -174619311 - THE1B LTR MaLR 0 364 1 931 325 118 37 chr3 43417847 43418365 -174618793 - L2 LINE L2 -2145 1169 578 722 233 20 0 chr3 43418441 43418587 -174618571 + MER58A DNA MER1_type 2 150 0 302 306 99 16 chr3 43418647 43418768 -174618390 - L2 LINE L2 -2845 469 339 377 372 14 46 chr3 43419403 43419621 -174617537 - L2 LINE L2 -3029 285 75 283 204 265 0 chr3 43419639 43419737 -174617421 + MER5C DNA MER1_type 1 124 -200 211 180 18 171 chr3 43419746 43419857 -174617301 + MER5C DNA MER1_type 226 319 -5 357 140 0 0 chr3 43419901 43419958 -174617200 + L1MB5 LINE L1 6032 6088 -86 30 27 0 0 chr3 43419958 43419995 -174617163 + AT_rich Low_complexity Low_complexity 1 37 0 1925 201 8 13 chr3 43420122 43420514 -174616644 - MLT1B LTR MaLR 0 390 1 461 254 203 35 chr3 43421694 43421932 -174615226 + LTR16A LTR ERVL 126 408 -49 468 327 36 0 chr3 43422728 43422896 -174614262 + MIR SINE MIR 47 220 -42 200 327 9 80 chr3 43422979 43423092 -174614066 + MIR3 SINE MIR 93 197 -11 233 275 65 46 chr3 43423123 43423253 -174613905 - MIR SINE MIR -65 143 21 315 0 0 0 chr3 43423799 43423834 -174613324 + (T)n Simple_repeat Simple_repeat 1 35 0 360 357 46 8 chr3 43423834 43424093 -174613065 + L2 LINE L2 2752 3020 -252 360 317 79 30 chr3 43424458 43424622 -174612536 - MIR SINE MIR -71 191 20 433 316 51 55 chr3 43424673 43424926 -174612232 - MIR SINE MIR -8 254 3 180 152 0 0 chr3 43425488 43425521 -174611637 + (TAA)n Simple_repeat Simple_repeat 2 34 0 730 186 0 0 chr3 43425549 43425673 -174611485 - AluJb SINE Alu -188 124 1 199 350 29 29 chr3 43425734 43425837 -174611321 - MIR SINE MIR -63 145 63 322 317 75 19 chr3 43425978 43426139 -174611019 - MIR SINE MIR -91 171 2 435 305 80 19 chr3 43426311 43426714 -174610444 - L1 LINE L1 -2285 3861 3428 716 292 30 30 chr3 43426716 43427021 -174610137 - MLT2C1 LTR ERVL -3 394 90 37126 83 12 4 chr3 43427028 43432091 -174605067 + L1P LINE L1 7 5111 -1035 692 92 0 0 chr3 43432099 43432186 -174604972 + L1PA4 LINE L1 12 98 -6048 * 30958 50 6 3 chr3 43432184 43437698 -174599460 + L1PA4 LINE L1 623 6163 -170 6137 106 10 0 chr3 43437698 43438750 -174598408 + L1PA10 LINE L1 5098 6164 -4 30958 50 6 3 chr3 43438750 43438922 -174598236 + L1PA4 LINE L1 6163 6333 0 26 30 0 0 chr3 43440461 43440494 -174596664 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 43440504 43440532 -174596626 + AT_rich Low_complexity Low_complexity 1 28 0 1984 140 34 30 chr3 43440534 43440877 -174596281 + THE1B LTR MaLR 1 341 -87 10929 119 6 6 chr3 43440877 43442455 -174594703 + THE1B-int LTR MaLR 3 1580 0 1974 144 44 39 chr3 43442455 43442817 -174594341 + THE1B LTR MaLR 1 364 0 199 263 114 35 chr3 43444886 43445000 -174592158 + L2 LINE L2 3178 3300 -13 330 311 81 7 chr3 43446182 43446330 -174590828 + L3 LINE CR1 1343 1501 -76 586 260 61 22 chr3 43446407 43446588 -174590570 - L2 LINE L2 0 3313 3126 214 358 73 32 chr3 43446672 43446890 -174590268 - MIR SINE MIR 0 262 36 1815 237 7 14 chr3 43447335 43447774 -174589384 + L1ME3 LINE L1 5720 6155 -7 1744 165 0 48 chr3 43448451 43448767 -174588391 + AluJo SINE Alu 1 301 -11 1911 116 0 8 chr3 43449244 43449511 -174587647 + AluSp SINE Alu 28 292 -21 403 181 0 105 chr3 43449544 43449649 -174587509 - MER5A DNA MER1_type -95 94 1 183 348 62 54 chr3 43449742 43450001 -174587157 - L2 LINE L2 -643 2671 2411 507 284 11 74 chr3 43450387 43450438 -174586720 - MER5A DNA MER1_type -11 178 125 1955 117 0 4 chr3 43450438 43450704 -174586454 + AluSp SINE Alu 28 292 -21 507 284 11 74 chr3 43450704 43450842 -174586316 - MER5A DNA MER1_type -64 125 1 221 351 58 50 chr3 43450935 43451194 -174585964 - L2 LINE L2 -643 2671 2411 547 233 40 20 chr3 43453117 43453267 -174583891 - LTR33 LTR ERVL -258 263 111 334 296 39 48 chr3 43454156 43454386 -174582772 - L1ME3A LINE L1 -118 6121 5894 1565 168 27 0 chr3 43454607 43454863 -174582295 + AluJb SINE Alu 45 307 -5 284 279 175 0 chr3 43454866 43455020 -174582138 - L1ME3A LINE L1 -2519 5592 5412 342 292 138 26 chr3 43455087 43455594 -174581564 - L1ME3A LINE L1 -852 5363 4800 561 241 77 79 chr3 43455792 43456285 -174580873 - L1ME3A LINE L1 -2160 4055 3564 21 36 0 0 chr3 43456337 43456365 -174580793 + AT_rich Low_complexity Low_complexity 1 28 0 744 296 72 22 chr3 43456402 43456861 -174580297 - L1ME3A LINE L1 -5398 998 517 375 255 75 31 chr3 43456892 43457053 -174580105 + L1MEc LINE L1 233 400 -5996 302 313 14 21 chr3 43457037 43457181 -174579977 - L1ME3A LINE L1 -6218 178 36 * 2978 243 93 30 chr3 43457205 43457724 -174579434 - L1MC4 LINE L1 -374 7668 7183 2207 80 26 7 chr3 43457724 43458026 -174579132 - AluY SINE Alu -3 308 1 2978 243 93 30 chr3 43458026 43458640 -174578518 - L1MC4 LINE L1 -859 7183 6463 2531 232 42 42 chr3 43458902 43459488 -174577670 - L1MC3 LINE L1 -1 7784 7196 3497 144 21 38 chr3 43459488 43460101 -174577057 + LTR26 LTR ERV1 1 603 0 2531 232 42 42 chr3 43460101 43460251 -174576907 - L1MC3 LINE L1 -588 7197 7048 849 320 86 48 chr3 43460958 43461543 -174575615 - L1MEd LINE L1 -5511 608 2 205 302 87 70 chr3 43461957 43462129 -174575029 - MIR SINE MIR -4 258 84 1572 272 48 7 chr3 43463234 43463668 -174573490 + LTR16A1 LTR ERVL 6 457 0 243 350 94 19 chr3 43465552 43465712 -174571446 + MIR SINE MIR 21 192 -70 227 314 59 85 chr3 43465770 43465888 -174571270 - L2 LINE L2 -20 3252 3138 285 274 63 32 chr3 43466502 43466597 -174570561 - MIR SINE MIR -64 144 47 1340 279 139 28 chr3 43467773 43468757 -174568401 - L2 LINE L2 -1 3312 2214 2766 128 5 21 chr3 43468785 43469214 -174567944 + MER57B LTR ERV1 3 424 -10 698 256 25 40 chr3 43469222 43469484 -174567674 + MER57B-int LTR ERV1 3 298 -7239 326 314 56 63 chr3 43470101 43470420 -174566738 + MER57B-int LTR ERV1 1274 1590 -5211 842 346 58 52 chr3 43471479 43473122 -174564036 + MER57B-int LTR ERV1 158 3877 -2924 2135 267 12 51 chr3 43473218 43474587 -174562571 + MER57B-int LTR ERV1 2145 6169 -1368 2007 144 7 0 chr3 43475347 43475639 -174561519 - AluSx SINE Alu -18 294 1 602 311 29 33 chr3 43476433 43476674 -174560484 + MER57B-int LTR ERV1 6816 7055 -482 515 121 20 40 chr3 43476723 43476822 -174560336 + MER57B-int LTR ERV1 7441 7537 0 2571 134 16 32 chr3 43476822 43477261 -174559897 + MER57B LTR ERV1 1 432 -2 256 318 80 25 chr3 43477267 43477468 -174559690 - L2 LINE L2 -1120 2194 1983 216 0 0 0 chr3 43477477 43477501 -174559657 + (TG)n Simple_repeat Simple_repeat 1 24 0 187 267 0 22 chr3 43477671 43477716 -174559442 - L2 LINE L2 -13 3300 3257 * 248 254 0 17 chr3 43477686 43477745 -174559413 - MIR SINE MIR -21 241 184 1711 158 0 4 chr3 43477757 43478051 -174559107 + AluSx SINE Alu 26 318 0 1906 151 29 17 chr3 43478081 43478432 -174558726 + Tigger2a DNA MER2_type 8 362 -72 990 176 35 10 chr3 43478552 43478751 -174558407 + Tigger2 DNA MER2_type 2515 2718 0 215 227 53 67 chr3 43478751 43478826 -174558332 - MIR SINE MIR -105 157 84 509 244 52 0 chr3 43478837 43478952 -174558206 + Tigger3(Golem) DNA MER2_type 2 122 -2907 * 3805 114 62 48 chr3 43478938 43479226 -174557932 + Tigger3(Golem) DNA MER2_type 2285 2568 -461 1456 178 13 64 chr3 43479226 43479540 -174557618 + AluJo SINE Alu 1 298 -14 3805 114 62 48 chr3 43479540 43479976 -174557182 + Tigger3(Golem) DNA MER2_type 2568 3019 -10 261 0 0 0 chr3 43480127 43480156 -174557002 + (T)n Simple_repeat Simple_repeat 1 29 0 297 364 25 16 chr3 43480833 43480954 -174556204 + LTR16C LTR ERVL 127 248 -243 392 257 46 53 chr3 43480982 43481053 -174556105 + LTR16C LTR ERVL 341 411 -80 1963 176 12 47 chr3 43481053 43481457 -174555701 + MLT1B LTR MaLR 1 390 0 392 257 46 53 chr3 43481457 43481537 -174555621 + LTR16C LTR ERVL 411 491 0 400 330 132 9 chr3 43482251 43482463 -174554695 - MIR SINE MIR -14 248 11 2241 266 84 49 chr3 43482944 43484159 -174552999 - L1MDa LINE L1 -1371 5169 3913 491 194 54 0 chr3 43484167 43484296 -174552862 + L1MC2 LINE L1 5313 5448 -896 * 2472 180 90 40 chr3 43484294 43484926 -174552232 + L1MC2 LINE L1 5675 6338 -6 680 258 75 11 chr3 43484968 43485340 -174551818 - L1M4 LINE L1 -2614 3532 3137 * 1270 211 61 27 chr3 43485334 43485709 -174551449 - L1MA9 LINE L1 -1 6311 5924 1418 177 36 33 chr3 43485709 43486043 -174551115 + THE1C LTR MaLR 1 335 -40 2348 203 85 14 chr3 43486150 43487258 -174549900 - L1MA9 LINE L1 -399 5913 4727 706 147 88 78 chr3 43487364 43487568 -174549590 + L1MC2 LINE L1 6133 6338 -6 754 264 73 5 chr3 43487610 43487981 -174549177 - L1MDa LINE L1 -2614 3926 3531 * 4230 197 66 36 chr3 43487975 43488351 -174548807 - L1MA9 LINE L1 -1 6311 5948 1881 154 38 22 chr3 43488351 43488720 -174548438 + THE1C LTR MaLR 1 375 0 4230 197 66 36 chr3 43488720 43490369 -174546789 - L1MA9 LINE L1 -364 5948 4233 1835 218 11 11 chr3 43490382 43490836 -174546322 + L1 LINE L1 3257 3710 -2436 1191 200 62 0 chr3 43490837 43491097 -174546061 + L1 LINE L1 3817 4092 -2054 1187 284 109 34 chr3 43491092 43491624 -174545534 - L1M4 LINE L1 -5373 582 11 * 7410 242 97 18 chr3 43491640 43491750 -174545408 - L1MDa LINE L1 -2997 3543 3443 1040 171 37 14 chr3 43491750 43491967 -174545191 - L1PA16 LINE L1 -2 6164 5943 7410 242 97 18 chr3 43491967 43492806 -174544352 - L1MDa LINE L1 -3097 3443 2671 4210 130 6 9 chr3 43492806 43493461 -174543697 + MER39B LTR ERV1 1 653 0 7410 242 97 18 chr3 43493461 43495627 -174541531 - L1MDa LINE L1 -3869 2671 173 1227 107 0 0 chr3 43495634 43495793 -174541365 - AluSp SINE Alu -18 295 137 693 204 7 14 chr3 43495794 43495941 -174541217 - L1MDa LINE L1 -6379 161 16 500 239 67 8 chr3 43495989 43496123 -174541035 - MLT1H LTR MaLR -396 153 12 3962 132 53 78 chr3 43496721 43497515 -174539643 + LTR1 LTR ERV1 12 785 0 2000 117 154 9 chr3 43497552 43497902 -174539256 + L1PB1 LINE L1 5734 6134 -17 378 276 135 0 chr3 43497911 43498081 -174539077 + L1MC4a LINE L1 5957 6149 -1659 21 0 0 0 chr3 43498227 43498248 -174538910 + AT_rich Low_complexity Low_complexity 1 21 0 313 364 123 5 chr3 43498501 43498721 -174538437 - MIR SINE MIR -16 246 1 813 259 48 35 chr3 43499686 43499721 -174537437 - L1MEc LINE L1 -3739 3218 3185 1780 164 44 6 chr3 43499721 43500063 -174537095 + MER46B DNA MER2_type 5 234 -2 813 259 48 35 chr3 43500063 43500474 -174536684 - L1MEc LINE L1 -3772 3185 2807 202 414 23 23 chr3 43500882 43501102 -174536056 - L2 LINE L2 -462 2852 2633 473 263 29 108 chr3 43502086 43502211 -174534947 - MIR SINE MIR -39 223 124 1104 228 16 0 chr3 43502211 43502461 -174534697 - L1PB4 LINE L1 -3 6153 5900 473 263 29 108 chr3 43502461 43502575 -174534583 - MIR SINE MIR -138 124 3 2708 272 77 11 chr3 43503283 43504022 -174533136 + L1MDa LINE L1 11 798 -5742 2752 278 76 19 chr3 43504027 43504933 -174532225 - L1MEc LINE L1 -5900 959 2 1032 288 109 16 chr3 43505017 43505403 -174531755 - LTR16A1 LTR ERVL -34 423 2 197 248 248 29 chr3 43505695 43505800 -174531358 - L2 LINE L2 -2 3270 3143 2015 131 3 0 chr3 43506566 43506873 -174530285 + AluSx SINE Alu 3 310 0 327 336 40 20 chr3 43507204 43507353 -174529805 + MLT1H LTR MaLR 20 171 -378 831 179 106 11 chr3 43507356 43507535 -174529623 + MER34C LTR ERV1 4 199 -386 672 333 20 5 chr3 43507561 43507756 -174529402 - MER115 DNA AcHobo -345 348 151 1436 201 164 23 chr3 43508309 43508706 -174528452 - MLT1C LTR MaLR -12 455 3 1469 255 86 18 chr3 43508714 43508810 -174528348 - MLT1C-int LTR MaLR -6 1365 1277 2257 108 0 0 chr3 43508810 43509105 -174528053 - AluSx SINE Alu -17 295 1 1469 255 86 18 chr3 43509105 43509451 -174527707 - MLT1C-int LTR MaLR -94 1277 893 1370 213 68 95 chr3 43509437 43509878 -174527280 - MLT1C-int LTR MaLR -383 988 560 * 2612 192 26 87 chr3 43509878 43510705 -174526453 + MER4D LTR ERV1 1 896 -7 686 147 9 0 chr3 43510713 43510829 -174526329 - MLT1C-int LTR MaLR -808 563 447 2108 180 42 27 chr3 43510911 43511117 -174526041 - MLT1C LTR MaLR -2 465 264 2134 121 60 14 chr3 43511117 43511465 -174525693 - THE1B LTR MaLR 0 364 1 2108 180 42 27 chr3 43511465 43511707 -174525451 - MLT1C LTR MaLR -203 264 10 1392 297 150 48 chr3 43511887 43513569 -174523589 + HAL1 LINE L1 4 1857 -650 371 288 38 15 chr3 43514408 43514540 -174522618 + MIR SINE MIR 123 257 -5 525 258 133 21 chr3 43514835 43515075 -174522083 + MER5C DNA MER1_type 5 271 -53 321 307 127 37 chr3 43515163 43515352 -174521806 + L2 LINE L2 3104 3309 -4 378 0 0 0 chr3 43516775 43516817 -174520341 + (CA)n Simple_repeat Simple_repeat 1 42 0 365 306 104 14 chr3 43517186 43517410 -174519748 - MIR SINE MIR -11 251 2 255 308 84 0 chr3 43518439 43518546 -174518612 + MIR SINE MIR 76 191 -71 447 312 126 21 chr3 43520035 43520423 -174516735 - LTR33 LTR ERVL -59 462 34 297 194 119 0 chr3 43520895 43520962 -174516196 - L2 LINE L2 -19 3253 3179 1645 190 45 0 chr3 43521246 43521535 -174515623 + AluJb SINE Alu 3 304 -8 188 390 0 0 chr3 43522228 43522287 -174514871 - L3 LINE CR1 -1 1576 1518 556 237 86 38 chr3 43522327 43522513 -174514645 + MER3 DNA MER1_type 12 206 -3 229 273 0 0 chr3 43522473 43522528 -174514630 - MER3 DNA MER1_type -119 90 36 * 182 105 26 0 chr3 43522840 43522878 -174514280 + (TTTAA)n Simple_repeat Simple_repeat 3 41 0 24 0 0 0 chr3 43523413 43523437 -174513721 + AT_rich Low_complexity Low_complexity 1 24 0 940 216 74 66 chr3 43525001 43525436 -174511722 - MLT1A2 LTR MaLR 0 374 14 315 0 0 0 chr3 43526363 43526398 -174510760 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2806 3 0 0 chr3 43526400 43526701 -174510457 - AluYb8 SINE Alu -17 301 1 23 0 0 0 chr3 43526701 43526724 -174510434 + AT_rich Low_complexity Low_complexity 1 23 0 213 406 58 0 chr3 43526924 43527062 -174510096 + MIR3 SINE MIR 36 181 -27 340 279 12 0 chr3 43527646 43527732 -174509426 + MER96 DNA MER1_type? 79 165 -10 2297 213 48 8 chr3 43527820 43528356 -174508802 - MER74A LTR ERVL 0 558 1 188 206 0 0 chr3 43528463 43528497 -174508661 + L2 LINE L2 3258 3291 -22 180 111 0 0 chr3 43530003 43530030 -174507128 + (A)n Simple_repeat Simple_repeat 1 27 0 368 338 75 10 chr3 43530044 43530245 -174506913 - MIR SINE MIR 0 262 49 239 292 119 18 chr3 43530276 43530444 -174506714 - HAL1 LINE L1 -8 2499 2315 1193 226 4 0 chr3 43530739 43531000 -174506158 + L1ME2 LINE L1 5720 5981 -183 6620 60 26 1 chr3 43531002 43532577 -174504581 + L1PA5 LINE L1 4564 6152 -2 321 263 25 0 chr3 43532581 43532661 -174504497 - MLT2C1 LTR ERVL -314 83 2 9738 231 41 10 chr3 43532662 43535013 -174502145 - ERVL LTR ERVL -1 5653 3263 1689 238 130 33 chr3 43535008 43535437 -174501721 - ERVL LTR ERVL -2704 3060 2564 * 2814 0 0 0 chr3 43535437 43535737 -174501421 + AluYa8 SINE Alu 1 300 -10 1689 238 130 33 chr3 43535737 43535857 -174501301 - ERVL LTR ERVL -3200 2564 2457 768 203 0 0 chr3 43535975 43536108 -174501050 - ERVL LTR ERVL -3622 2142 2010 21 71 0 0 chr3 43536112 43536154 -174501004 + AT_rich Low_complexity Low_complexity 1 42 0 700 150 0 36 chr3 43536396 43536536 -174500622 + L1PB3 LINE L1 6019 6153 -1 22 0 0 0 chr3 43537394 43537416 -174499742 + AT_rich Low_complexity Low_complexity 1 22 0 203 138 0 0 chr3 43537424 43537453 -174499705 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 1785 164 0 11 chr3 43538171 43538489 -174498669 - AluJb SINE Alu 0 315 1 5952 152 47 25 chr3 43538519 43539681 -174497477 - Tigger3b DNA MER2_type -13 1218 31 1077 282 72 11 chr3 43540179 43540526 -174496632 + MLT1A2 LTR MaLR 1 368 -6 1953 210 67 6 chr3 43540533 43541083 -174496075 + MLT1A2-int LTR MaLR 20 739 -632 280 226 16 0 chr3 43541192 43541254 -174495904 + MLT1A2-int LTR MaLR 669 731 -1004 1673 232 36 8 chr3 43541452 43541844 -174495314 + MLT1A2-int LTR MaLR 1314 1716 -19 330 293 30 85 chr3 43542264 43542428 -174494730 - HAL1 LINE L1 -688 1819 1665 3566 216 53 10 chr3 43542431 43543350 -174493808 - L1MB1 LINE L1 -853 5293 4335 4065 181 65 2 chr3 43543351 43544154 -174493004 + L1MB1 LINE L1 5315 6167 -1 812 230 60 105 chr3 43544212 43544660 -174492498 - HAL1 LINE L1 -869 1638 1211 348 169 0 0 chr3 43544690 43544767 -174492391 + CT-rich Low_complexity Low_complexity 2 78 0 547 318 18 39 chr3 43545020 43545303 -174491855 - HAL1 LINE L1 -1600 907 631 304 340 24 52 chr3 43545334 43545584 -174491574 - HAL1 LINE L1 -2149 358 116 292 227 13 13 chr3 43545894 43545969 -174491189 - MIR SINE MIR -111 151 77 227 269 202 25 chr3 43547211 43547330 -174489828 + MIR SINE MIR 90 229 -33 315 0 0 0 chr3 43547492 43547527 -174489631 + (TG)n Simple_repeat Simple_repeat 2 36 0 292 230 139 61 chr3 43547947 43548112 -174489046 - MIR SINE MIR -77 185 8 274 269 10 29 chr3 43548464 43548568 -174488590 + MLT1A2-int LTR MaLR 1622 1723 -12 294 242 150 33 chr3 43548590 43548710 -174488448 + MLT1A2 LTR MaLR 7 140 -250 2066 115 7 3 chr3 43548794 43549089 -174488069 + AluSx SINE Alu 11 306 -6 2037 115 3 7 chr3 43550664 43550951 -174486207 - AluSx SINE Alu -26 286 1 796 234 67 60 chr3 43551216 43551498 -174485660 + MER5C DNA MER1_type 41 324 0 207 0 0 0 chr3 43652783 43652806 -174384352 + (TG)n Simple_repeat Simple_repeat 2 24 0 2289 102 0 7 chr3 43652806 43653110 -174384048 - AluSx SINE Alu -10 302 1 1601 166 21 0 chr3 43654747 43655031 -174382127 - AluJb SINE Alu -22 290 1 2225 165 23 44 chr3 43655032 43655506 -174381652 - L1MD1 LINE L1 -350 5892 5429 1457 30 0 12 chr3 43655770 43655937 -174381221 - L1PA3 LINE L1 0 6155 5991 2231 166 56 12 chr3 43655938 43656341 -174380817 + MER82 DNA MER2_type 151 572 -76 1501 181 11 7 chr3 43656341 43656617 -174380541 - AluSp SINE Alu -15 298 22 2041 125 11 3 chr3 43657107 43657394 -174379764 + AluSx SINE Alu 6 294 -18 683 219 0 0 chr3 43657437 43657556 -174379602 + FLAM_A SINE Alu 5 123 -10 2008 104 7 4 chr3 43658100 43658370 -174378788 - AluSx SINE Alu -27 285 15 470 191 38 9 chr3 43658384 43658489 -174378669 + Charlie1 DNA MER1_type 2638 2745 -16 1349 130 9 31 chr3 43658614 43658837 -174378321 - AluSg/x SINE Alu -20 292 75 392 323 28 9 chr3 43658888 43659024 -174378134 - MIR3 SINE MIR -29 179 39 230 371 68 86 chr3 43659478 43659699 -174377459 - L2 LINE L2 -90 3182 2966 297 282 37 83 chr3 43659898 43660020 -174377138 - L1ME LINE L1 -565 5556 5447 2552 57 3 0 chr3 43660020 43660321 -174376837 + AluY SINE Alu 1 302 -9 297 282 37 83 chr3 43660321 43660414 -174376744 - L1ME LINE L1 -674 5447 5351 377 307 151 10 chr3 43660671 43660863 -174376295 + MIR SINE MIR 14 232 -30 342 339 163 25 chr3 43660889 43661134 -174376024 + L2 LINE L2 2993 3271 -1 438 256 141 41 chr3 43661351 43661431 -174375727 + L1MC4a LINE L1 5727 5798 -2010 249 33 0 0 chr3 43661431 43661461 -174375697 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2144 126 3 3 chr3 43661463 43661765 -174375393 + AluSx SINE Alu 1 302 -10 438 256 141 41 chr3 43661765 43661951 -174375207 + L1MC4a LINE L1 5798 6023 -1785 2096 113 0 27 chr3 43661976 43662276 -174374882 + AluSx SINE Alu 1 292 -20 1232 106 19 43 chr3 43662622 43662829 -174374329 + AluSg/x SINE Alu 95 296 -16 789 286 84 31 chr3 43662844 43663324 -174373834 - L1ME LINE L1 -578 5592 5068 2282 100 3 3 chr3 43663324 43663623 -174373535 + AluSg SINE Alu 1 299 -11 789 286 84 31 chr3 43663623 43663852 -174373306 - L1ME LINE L1 -1102 5068 4853 1751 199 10 33 chr3 43664021 43664412 -174372746 - L1M4c LINE L1 -4460 1924 1543 2302 103 3 3 chr3 43664424 43664736 -174372422 - AluSx SINE Alu 0 312 1 216 0 0 0 chr3 43664737 43664761 -174372397 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1985 132 3 3 chr3 43664763 43665050 -174372108 - AluSx SINE Alu -25 287 1 276 100 43 86 chr3 43665050 43665120 -174372038 - L1M4c LINE L1 -4825 1559 1493 1637 138 11 35 chr3 43665258 43665541 -174371617 + LTR22A LTR ERVK 183 458 0 2176 113 7 0 chr3 43665717 43666010 -174371148 - AluSp SINE Alu -18 295 1 401 203 0 0 chr3 43766287 43766361 -174270797 - L1PA16 LINE L1 -265 5901 5828 5198 134 21 14 chr3 43766364 43767201 -174269957 - Tigger1 DNA MER2_type -910 1508 666 5330 108 99 116 chr3 43767204 43768794 -174268364 - pTR5 LTR ERV1 0 2438 748 339 113 0 48 chr3 43768794 43768856 -174268302 - Tigger1 DNA MER2_type -1744 674 616 823 130 48 0 chr3 43768861 43769007 -174268151 - L1MA4 LINE L1 -6 6294 6142 604 173 0 16 chr3 43769007 43769134 -174268024 - L1MA4A LINE L1 -202 6101 5977 2835 201 62 7 chr3 43769135 43769727 -174267431 - Tigger1 DNA MER2_type -1777 641 17 191 206 196 11 chr3 43769982 43770074 -174267084 + MIR SINE MIR 148 256 -6 187 250 118 0 chr3 43770593 43770661 -174266497 + MIR3 SINE MIR 87 162 -46 23 33 0 0 chr3 43770759 43770789 -174266369 + AT_rich Low_complexity Low_complexity 1 30 0 448 268 127 6 chr3 43771914 43772071 -174265087 + LTR50 LTR ERVL 1 176 -619 266 290 51 68 chr3 43772392 43772568 -174264590 - HAL1 LINE L1 -2333 174 2 475 294 27 7 chr3 43772808 43772954 -174264204 + MIR SINE MIR 53 201 -61 1339 211 53 19 chr3 43773304 43773838 -174263320 + MLT1E2 LTR MaLR 8 626 0 299 281 45 0 chr3 43774286 43774375 -174262783 + MIR SINE MIR 111 203 -59 1125 169 30 5 chr3 43776195 43776396 -174260762 + L1PA16 LINE L1 5937 6142 -24 5614 133 29 15 chr3 43776406 43777315 -174259843 + Tigger1 DNA MER2_type 1498 2418 0 232 208 75 0 chr3 43778218 43778271 -174258887 - LTR33A LTR ERVL 0 523 467 413 284 91 11 chr3 43779225 43779401 -174257757 - MIR SINE MIR 0 262 73 207 170 0 0 chr3 43779444 43779491 -174257667 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr3 43779836 43779867 -174257291 + AT_rich Low_complexity Low_complexity 1 31 0 31 82 0 0 chr3 43780742 43780815 -174256343 + AT_rich Low_complexity Low_complexity 1 73 0 23 54 0 0 chr3 43780971 43781008 -174256150 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 43781134 43781158 -174256000 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 43781458 43781486 -174255672 + AT_rich Low_complexity Low_complexity 1 28 0 521 331 43 30 chr3 43781526 43781898 -174255260 - L1MC/D LINE L1 -2177 5631 5255 2496 164 58 91 chr3 43782043 43782733 -174254425 - L1MC2 LINE L1 0 6344 5678 291 345 36 49 chr3 43782785 43783008 -174254150 + L2 LINE L2 2629 2848 -466 270 279 52 32 chr3 43783008 43783162 -174253996 + L1ME3A LINE L1 5207 5363 -783 1289 121 10 35 chr3 43783206 43783404 -174253754 - AluSq SINE Alu -22 291 99 438 278 28 7 chr3 43783454 43783598 -174253560 + L1ME3A LINE L1 5451 5597 -569 223 239 30 0 chr3 43783632 43783699 -174253459 + (TA)n Simple_repeat Simple_repeat 1 69 0 906 258 80 19 chr3 43783731 43784092 -174253066 + L1ME3A LINE L1 5788 6170 0 22 0 0 0 chr3 43785668 43785690 -174251468 + AT_rich Low_complexity Low_complexity 1 22 0 1082 156 14 46 chr3 43785864 43786082 -174251076 - AluSg/x SINE Alu -17 295 85 334 39 0 20 chr3 43786082 43786133 -174251025 - AluY SINE Alu -52 249 200 1168 81 0 0 chr3 43786133 43786282 -174250876 - AluSq/x SINE Alu -164 149 1 323 233 144 62 chr3 43786577 43786723 -174250435 - MLT1H LTR MaLR -9 540 383 191 364 0 18 chr3 43787152 43787207 -174249951 + L2 LINE L2 3127 3180 -92 1240 250 38 31 chr3 43787354 43787865 -174249293 + MER77 LTR ERV1 55 601 -4 320 332 113 55 chr3 43788051 43788442 -174248716 - L2 LINE L2 -55 3258 2789 745 253 22 6 chr3 43788442 43788624 -174248534 + MER5A DNA MER1_type 2 186 -3 320 332 113 55 chr3 43788624 43788831 -174248327 - L2 LINE L2 -524 2789 2595 210 296 98 23 chr3 43790523 43790655 -174246503 - L2 LINE L2 0 3313 3172 4448 194 13 33 chr3 43790704 43790936 -174246222 - L1 LINE L1 -1280 4866 4631 4783 65 5 5 chr3 43790936 43791566 -174245592 - L1PA5 LINE L1 -8 6146 5517 4448 194 13 33 chr3 43791566 43792351 -174244807 - L1 LINE L1 -1515 4631 3870 6627 75 9 0 chr3 43792360 43793683 -174243475 - L1PA7 LINE L1 0 6154 4824 220 326 116 43 chr3 43794034 43794172 -174242986 - MIR SINE MIR -7 255 108 231 349 34 34 chr3 43797018 43797164 -174239994 + L2 LINE L2 2553 2698 -616 243 349 60 18 chr3 43797753 43797919 -174239239 + LTR16C LTR ERVL 305 477 -14 257 333 60 47 chr3 43798040 43798190 -174238968 + L2 LINE L2 3116 3267 -5 189 0 0 0 chr3 43799623 43799644 -174237514 + (T)n Simple_repeat Simple_repeat 1 21 0 223 213 16 16 chr3 43799974 43800035 -174237123 + (TAA)n Simple_repeat Simple_repeat 3 63 0 724 272 130 45 chr3 43800090 43800605 -174236553 + L1ME LINE L1 5264 5822 -348 295 309 85 24 chr3 43801051 43801216 -174235942 + MIR SINE MIR 82 256 -6 3894 156 48 10 chr3 43804135 43804849 -174232309 + L1MC2 LINE L1 5593 6333 -11 914 112 8 0 chr3 43805035 43805194 -174231964 + L1PA8 LINE L1 6014 6173 0 216 0 0 0 chr3 43806627 43806651 -174230507 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 25 65 0 0 chr3 43807381 43807427 -174229731 + AT_rich Low_complexity Low_complexity 1 46 0 593 345 47 13 chr3 43807532 43807767 -174229391 + MIR SINE MIR 19 261 -1 239 0 0 31 chr3 43808479 43808511 -174228647 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 456 304 121 38 chr3 43808886 43809225 -174227933 + MLT1I LTR MaLR 42 408 -1 2483 253 104 56 chr3 43810610 43811505 -174225653 + L1MDa LINE L1 27 964 -5576 439 209 43 0 chr3 43811512 43811627 -174225531 + L1MDa LINE L1 1750 1869 -4671 334 155 35 0 chr3 43811626 43811684 -174225474 - L1MA9 LINE L1 -230 6082 6023 * 645 229 0 0 chr3 43811685 43811825 -174225333 + L1MA9 LINE L1 6152 6291 -21 512 154 0 0 chr3 43811844 43811935 -174225223 + L1MDa LINE L1 1861 1951 -4589 * 1239 195 78 33 chr3 43811931 43812077 -174225081 + L1MD1 LINE L1 5894 6032 -210 1975 131 0 3 chr3 43812077 43812368 -174224790 + AluSg SINE Alu 1 290 -20 1239 195 78 33 chr3 43812368 43812555 -174224603 + L1MD1 LINE L1 6032 6242 0 377 329 52 73 chr3 43812833 43813161 -174223997 - L3 LINE CR1 -264 1313 993 712 48 39 10 chr3 43813192 43813296 -174223862 - AluYa5/8 SINE Alu 0 310 204 353 215 16 16 chr3 43813499 43813620 -174223538 + (TA)n Simple_repeat Simple_repeat 2 122 0 210 133 83 0 chr3 43814469 43814529 -174222629 + (TA)n Simple_repeat Simple_repeat 1 65 0 235 253 78 102 chr3 43815945 43816111 -174221047 - MER103 DNA DNA -1 165 4 3094 167 41 5 chr3 43816599 43817179 -174219979 - LTR26 LTR ERV1 -2 601 1 189 0 0 0 chr3 43817541 43817562 -174219596 + (GA)n Simple_repeat Simple_repeat 2 22 0 2037 128 3 25 chr3 43817755 43818074 -174219084 + AluSx SINE Alu 1 312 0 38 0 0 0 chr3 43818242 43818280 -174218878 + AT_rich Low_complexity Low_complexity 1 38 0 307 273 73 47 chr3 43818320 43818470 -174218688 + HAL1b LINE L1 754 907 -441 216 0 0 0 chr3 43818912 43818936 -174218222 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 342 45 0 0 chr3 43819328 43819372 -174217786 + (CA)n Simple_repeat Simple_repeat 1 44 0 570 356 35 58 chr3 43819616 43820048 -174217110 + L2 LINE L2 2423 2844 -470 21 0 0 0 chr3 43820641 43820662 -174216496 + AT_rich Low_complexity Low_complexity 1 21 0 628 252 18 66 chr3 43821030 43821256 -174215902 + L2 LINE L2 3097 3311 -2 23 33 0 0 chr3 43821256 43821286 -174215872 + AT_rich Low_complexity Low_complexity 1 30 0 2895 6 0 0 chr3 43821348 43821665 -174215493 - AluYb8 SINE Alu -1 317 1 211 133 67 0 chr3 43822604 43822649 -174214509 + T-rich Low_complexity Low_complexity 3 50 0 1538 227 18 63 chr3 43822667 43823063 -174214095 - MLT1B LTR MaLR -10 380 3 277 385 68 0 chr3 43823074 43823266 -174213892 + L2 LINE L2 1005 1209 -2105 611 333 148 20 chr3 43823540 43824044 -174213114 - L2 LINE L2 -8 3305 2748 2054 106 0 0 chr3 43824736 43825050 -174212108 + AluSx SINE Alu 1 314 0 262 184 0 0 chr3 43825087 43825136 -174212022 + AluSp SINE Alu 121 169 -134 22 0 0 0 chr3 43825432 43825454 -174211704 + AT_rich Low_complexity Low_complexity 1 22 0 246 32 0 0 chr3 43825486 43825517 -174211641 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 946 59 0 0 chr3 43825517 43825636 -174211522 - L1PA3 LINE L1 -13 6142 6024 787 80 9 0 chr3 43825636 43825748 -174211410 - L1P LINE L1 -1339 4807 4695 313 324 59 37 chr3 43826278 43826414 -174210744 - L2 LINE L2 0 3272 3134 407 290 138 18 chr3 43826512 43826967 -174210191 + L1MDa LINE L1 1913 2422 -4118 216 424 12 0 chr3 43827042 43827127 -174210031 - L2 LINE L2 -48 3224 3139 222 150 0 0 chr3 43827223 43827263 -174209895 + (CA)n Simple_repeat Simple_repeat 2 41 0 204 227 0 0 chr3 43827382 43827426 -174209732 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 7042 48 16 0 chr3 43827509 43828511 -174208647 - L1PA3 LINE L1 -2 6153 5146 737 138 113 59 chr3 43829231 43829434 -174207724 + AluSg/x SINE Alu 94 307 -3 2222 88 3 3 chr3 43829559 43829853 -174207305 - AluSc SINE Alu -15 294 1 21 36 0 0 chr3 43829982 43830010 -174207148 + AT_rich Low_complexity Low_complexity 1 28 0 409 335 75 69 chr3 43832150 43832700 -174204458 + HAL1 LINE L1 826 1378 -1129 22 80 0 0 chr3 43832987 43833037 -174204121 + AT_rich Low_complexity Low_complexity 1 50 0 599 72 0 0 chr3 43833593 43833676 -174203482 - AluS SINE Alu -230 83 1 5105 168 18 31 chr3 43833767 43834059 -174203099 - L1MA4 LINE L1 -11 6289 5995 2821 7 0 0 chr3 43834059 43834369 -174202789 - AluYa5 SINE Alu -1 310 1 5105 168 18 31 chr3 43834369 43834801 -174202357 - L1MA4 LINE L1 -305 5995 5559 2435 54 3 0 chr3 43834801 43835097 -174202061 - AluY SINE Alu -14 297 1 5105 168 18 31 chr3 43835097 43835573 -174201585 - L1MA4 LINE L1 -741 5559 5100 656 165 24 0 chr3 43835586 43835713 -174201445 - L1MA4 LINE L1 -1135 5011 4882 2467 205 44 4 chr3 43835714 43836216 -174200942 + L1 LINE L1 3357 3878 -2268 3302 142 5 40 chr3 43836219 43836838 -174200320 + L1PB4 LINE L1 5557 6153 -3 1778 107 95 0 chr3 43836869 43837215 -174199943 + L1P LINE L1 4441 4819 -1327 195 319 149 0 chr3 43838602 43838743 -174198415 - MIR SINE MIR -51 211 50 235 326 118 7 chr3 43838810 43838945 -174198213 + MIR SINE MIR 113 262 0 1640 167 31 3 chr3 43839558 43839845 -174197313 - AluSx SINE Alu -17 295 1 205 216 0 39 chr3 43840107 43840158 -174197000 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 247 146 0 0 chr3 43840437 43840484 -174196674 + MIR SINE MIR 64 111 -97 304 232 30 77 chr3 43840867 43841035 -174196123 - LTR16A1 LTR ERVL -1 456 297 458 192 0 0 chr3 43841038 43841116 -174196042 + MER5A DNA MER1_type 1 78 -111 369 256 26 8 chr3 43841264 43841381 -174195777 - LTR16A1 LTR ERVL -330 127 9 604 293 50 0 chr3 43841529 43841751 -174195407 - L1MB7 LINE L1 -19 6165 5933 1469 104 0 5 chr3 43841751 43841944 -174195214 - AluY SINE Alu -20 291 100 240 111 0 0 chr3 43842292 43842328 -174194830 + (TG)n Simple_repeat Simple_repeat 1 36 0 422 331 41 0 chr3 43842400 43842569 -174194589 + MLT1J LTR MaLR 2 177 -334 284 264 116 8 chr3 43843465 43843594 -174193564 - MER104 DNA Tc2 -3 177 35 2507 67 0 0 chr3 43843681 43843981 -174193177 - AluY SINE Alu -11 300 1 1063 299 81 28 chr3 43844124 43844983 -174192175 + L2 LINE L2 2357 3313 0 59 74 0 0 chr3 43845887 43846009 -174191149 + AT_rich Low_complexity Low_complexity 1 122 0 611 246 49 44 chr3 43846048 43846138 -174191020 + MER3 DNA MER1_type 6 94 -115 1876 164 27 21 chr3 43846138 43846473 -174190685 + MER1B DNA MER1_type 1 337 0 611 246 49 44 chr3 43846473 43846585 -174190573 + MER3 DNA MER1_type 94 209 0 231 253 58 58 chr3 43847141 43847228 -174189930 + L2 LINE L2 3185 3271 -1 2265 105 0 13 chr3 43847605 43847918 -174189240 - AluSc SINE Alu 0 309 1 30 27 0 0 chr3 43848362 43848399 -174188759 + AT_rich Low_complexity Low_complexity 1 37 0 183 318 95 8 chr3 43848464 43848590 -174188568 - MIR SINE MIR -1 261 125 354 274 0 0 chr3 43849265 43849411 -174187747 + (TA)n Simple_repeat Simple_repeat 1 146 0 2876 170 23 0 chr3 43849424 43849990 -174187168 + L1 LINE L1 4226 4804 -1342 10088 172 30 41 chr3 43850099 43851069 -174186089 - Tigger2 DNA MER2_type -689 2029 1050 2107 115 0 10 chr3 43851069 43851373 -174185785 - AluSc SINE Alu -8 301 1 10088 172 30 41 chr3 43851373 43852454 -174184704 - Tigger2 DNA MER2_type -1668 1050 1 221 139 23 0 chr3 43852454 43852497 -174184661 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 316 355 26 7 chr3 43852784 43852936 -174184222 + MIR SINE MIR 96 250 -12 5156 183 20 35 chr3 43853837 43854872 -174182286 - ERVL LTR ERVL -578 5186 4167 1053 215 0 5 chr3 43854860 43855060 -174182098 - ERVL LTR ERVL -3335 2429 2231 * 571 234 26 7 chr3 43855060 43855214 -174181944 - MLT2D LTR ERVL -257 157 1 2235 101 0 3 chr3 43855328 43855634 -174181524 - AluSc SINE Alu -4 305 1 10924 28 2 6 chr3 43855649 43857715 -174179443 + L1PA3 LINE L1 4093 6155 0 1823 152 0 4 chr3 43857840 43858109 -174179049 - AluSx SINE Alu -44 268 1 751 240 21 16 chr3 43858109 43858396 -174178762 + MER90 LTR ERV1 288 614 0 360 224 18 127 chr3 43859858 43860010 -174177148 + MIR SINE MIR 43 177 -62 24 0 0 0 chr3 43860243 43860267 -174176891 + AT_rich Low_complexity Low_complexity 1 24 0 209 281 0 0 chr3 43860309 43860366 -174176792 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 221 0 35 0 chr3 43860417 43860446 -174176712 + (TA)n Simple_repeat Simple_repeat 1 30 0 10221 218 47 16 chr3 43860573 43865406 -174171752 + L1PB1 LINE L1 6 5273 -1589 3397 173 31 114 chr3 43865524 43866616 -174170542 - L1 LINE L1 -863 5283 4283 21 57 0 0 chr3 43867110 43867145 -174170013 + AT_rich Low_complexity Low_complexity 1 35 0 269 273 23 11 chr3 43867343 43867431 -174169727 + L1M4 LINE L1 4075 4163 -1983 5440 158 19 30 chr3 43869846 43870992 -174166166 + L1PB1 LINE L1 5355 6479 -388 398 20 20 0 chr3 43870992 43871043 -174166115 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 5440 158 19 30 chr3 43871043 43871427 -174165731 + L1PB1 LINE L1 6479 6866 -1 2156 130 0 0 chr3 43871439 43871732 -174165426 - AluSx SINE Alu -19 293 1 262 178 0 0 chr3 43872309 43872354 -174164804 - L1M1 LINE L1 -470 5835 5791 2793 142 11 0 chr3 43872365 43872831 -174164327 - L1M1 LINE L1 -490 5815 5345 2013 118 11 0 chr3 43872952 43873224 -174163934 + AluSx SINE Alu 27 301 -11 7355 36 11 5 chr3 43873713 43874827 -174162331 - L1PA4 LINE L1 -7 6148 5033 492 103 13 0 chr3 43874827 43874911 -174162247 + L1PA4 LINE L1 4956 5040 -1106 602 248 120 40 chr3 43875656 43876056 -174161102 + L1M4 LINE L1 4318 4749 -1397 37 39 0 0 chr3 43876200 43876251 -174160907 + AT_rich Low_complexity Low_complexity 1 51 0 34787 48 30 2 chr3 43876304 43880742 -174156416 + L1P LINE L1 3 4565 -1581 224 306 32 0 chr3 43881433 43881495 -174155663 - L2 LINE L2 -559 2755 2692 479 258 44 31 chr3 43882530 43882689 -174154469 - MIR SINE MIR -2 260 100 437 145 59 7 chr3 43882689 43882841 -174154317 + (TA)n Simple_repeat Simple_repeat 1 160 0 404 279 8 41 chr3 43882876 43882998 -174154160 - FLAM_A SINE Alu -15 118 1 319 93 37 0 chr3 43883000 43883054 -174154104 + L1MA5A LINE L1 6242 6297 0 269 227 159 11 chr3 43883088 43883176 -174153982 - MIR SINE MIR -160 102 2 302 338 6 45 chr3 43883571 43883728 -174153430 - MIR SINE MIR -60 202 52 219 305 43 21 chr3 43885144 43885285 -174151873 - MIR SINE MIR 0 262 119 2111 133 3 0 chr3 43885306 43885614 -174151544 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr3 43886785 43886813 -174150345 + AT_rich Low_complexity Low_complexity 1 28 0 201 94 0 0 chr3 43887150 43887182 -174149976 + (GA)n Simple_repeat Simple_repeat 1 32 0 1079 194 30 0 chr3 43887945 43888146 -174149012 + MSTB LTR MaLR 220 426 0 1980 145 96 0 chr3 43888159 43888491 -174148667 - THE1B LTR MaLR 0 364 1 10827 109 9 16 chr3 43888491 43889676 -174147482 - THE1B-int LTR MaLR 0 1580 407 1680 112 4 4 chr3 43889676 43889917 -174147241 - AluSg/x SINE Alu 0 310 70 10827 109 9 16 chr3 43889917 43890321 -174146837 - THE1B-int LTR MaLR -1173 407 2 2179 128 73 14 chr3 43890322 43890666 -174146492 - THE1B LTR MaLR 0 364 1 379 261 0 0 chr3 43890733 43890821 -174146337 + MER76 LTR ERV 317 404 -284 737 203 12 0 chr3 43891386 43891549 -174145609 - L1MB5 LINE L1 -8 6166 6002 2871 195 26 20 chr3 43891557 43892334 -174144824 - L1MB5 LINE L1 -280 5894 5115 237 315 69 31 chr3 43892913 43893043 -174144115 + MIR SINE MIR 2 136 -126 217 83 62 21 chr3 43893133 43893166 -174143992 + T-rich Low_complexity Low_complexity 5 42 -12 7418 32 4 0 chr3 43893166 43894446 -174142712 - L1PA3 LINE L1 -3 6152 4869 217 83 62 21 chr3 43894446 43894460 -174142698 + T-rich Low_complexity Low_complexity 42 54 0 21 0 0 0 chr3 43895035 43895056 -174142102 + AT_rich Low_complexity Low_complexity 1 21 0 2214 97 6 10 chr3 43895793 43896104 -174141054 + AluY SINE Alu 1 310 -1 207 0 0 0 chr3 43896799 43896822 -174140336 + (A)n Simple_repeat Simple_repeat 1 23 0 1159 196 45 54 chr3 43897418 43897749 -174139409 - L1MB7 LINE L1 -102 6082 5755 1017 263 83 23 chr3 43897767 43897843 -174139315 + L1M4 LINE L1 4844 4914 -1232 1701 173 47 36 chr3 43897843 43898202 -174138956 - MLT1A1 LTR MaLR -2 363 1 1017 263 83 23 chr3 43898202 43898653 -174138505 + L1M4 LINE L1 4914 5403 -743 302 114 19 152 chr3 43899178 43899283 -174137875 - LTR37B LTR ERV1 -179 289 199 282 263 82 23 chr3 43899525 43899696 -174137462 - L1ME3A LINE L1 -208 5962 5782 238 239 0 30 chr3 43899790 43899857 -174137301 - MLT1H LTR MaLR -377 172 108 220 303 0 0 chr3 43900054 43900120 -174137038 - MIR SINE MIR -108 154 89 1244 295 13 49 chr3 43901857 43902389 -174134769 - HERVL LTR ERVL -1324 4440 3928 364 348 17 21 chr3 43902426 43902659 -174134499 - HERVL LTR ERVL -3967 1687 1456 189 195 0 0 chr3 43903142 43903183 -174133975 + GA-rich Low_complexity Low_complexity 1 41 0 258 364 14 7 chr3 43904102 43904242 -174132916 - HERVL LTR ERVL -5064 700 560 189 107 0 0 chr3 43904269 43904297 -174132861 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 80 0 0 chr3 43904965 43905015 -174132143 + AT_rich Low_complexity Low_complexity 1 50 0 257 224 13 0 chr3 43905834 43905910 -174131248 + (TA)n Simple_repeat Simple_repeat 1 77 0 279 156 49 0 chr3 43905925 43906047 -174131111 + (TA)n Simple_repeat Simple_repeat 2 129 0 24 0 0 0 chr3 43906919 43906943 -174130215 + GC_rich Low_complexity Low_complexity 1 24 0 2404 185 20 13 chr3 43907043 43908051 -174129107 - L1M2 LINE L1 -537 5763 4746 2022 179 75 2 chr3 43908156 43908593 -174128565 + Tigger2 DNA MER2_type 2249 2717 -1 2048 181 24 9 chr3 43908840 43909265 -174127893 - L1MA6 LINE L1 -1 6299 5869 1623 178 64 0 chr3 43909831 43910112 -174127046 + AluSx SINE Alu 1 299 -13 611 162 204 21 chr3 43910117 43910308 -174126850 - MER5C DNA MER1_type -1 323 98 956 132 7 0 chr3 43910930 43911082 -174126076 + LTR9 LTR ERV1 460 612 0 1358 153 80 49 chr3 43911093 43911381 -174125777 - AluSg SINE Alu -13 297 1 186 43 0 0 chr3 43911816 43911839 -174125319 + (A)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr3 43912450 43912474 -174124684 + GC_rich Low_complexity Low_complexity 1 24 0 1883 109 10 10 chr3 43912827 43913130 -174124028 + L1MA3 LINE L1 5797 6099 -206 923 176 45 15 chr3 43913130 43913329 -174123829 + MSTA LTR MaLR 1 205 -223 257 200 29 0 chr3 43914066 43914136 -174123022 + CT-rich Low_complexity Low_complexity 1 72 0 1657 172 19 16 chr3 43914136 43914444 -174122714 - AluSx SINE Alu -3 309 1 207 370 7 44 chr3 43914459 43914594 -174122564 + MER5A DNA MER1_type 56 185 -4 21 0 0 0 chr3 43915885 43915906 -174121252 + GC_rich Low_complexity Low_complexity 1 21 0 1904 117 0 0 chr3 43916434 43916700 -174120458 + AluSg1 SINE Alu 14 279 -30 293 209 22 55 chr3 43916981 43917072 -174120086 - L2 LINE L2 0 3313 3226 27 35 0 0 chr3 43917189 43917218 -174119940 + GC_rich Low_complexity Low_complexity 1 29 0 729 121 0 17 chr3 44018665 44018781 -174018377 + AluJb SINE Alu 199 312 0 22 0 0 0 chr3 44019334 44019356 -174017802 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 44019591 44019613 -174017545 + AT_rich Low_complexity Low_complexity 1 22 0 41684 43 4 0 chr3 44019880 44025777 -174011381 + L1PA4 LINE L1 228 6147 -8 1619 231 67 62 chr3 44025784 44026511 -174010647 - MER69 DNA AcHobo -150 2376 1646 2230 128 0 0 chr3 44026563 44026869 -174010289 - AluSq SINE Alu -7 306 1 323 297 25 17 chr3 44027933 44028051 -174009107 - MLT1J LTR MaLR -70 441 323 821 313 117 32 chr3 44028065 44028116 -174009042 + MLT1H1 LTR MaLR 9 54 -501 2225 116 0 0 chr3 44028116 44028417 -174008741 + AluSx SINE Alu 1 301 -11 821 313 117 32 chr3 44028417 44028863 -174008295 + MLT1H1 LTR MaLR 54 548 -7 728 256 58 68 chr3 44028870 44029178 -174007980 - MLT1J LTR MaLR -202 309 5 1621 264 84 7 chr3 44029273 44029727 -174007431 - MLT1E2 LTR MaLR -1 625 137 22 35 0 0 chr3 44030608 44030637 -174006521 + AT_rich Low_complexity Low_complexity 1 29 0 212 348 52 15 chr3 44030884 44031019 -174006139 - L2 LINE L2 -183 3089 2950 221 333 50 8 chr3 44031724 44031844 -174005314 + L3b LINE CR1 1121 1245 -338 225 0 0 0 chr3 44032225 44032250 -174004908 + (TTA)n Simple_repeat Simple_repeat 2 26 0 382 324 52 24 chr3 44032946 44033156 -174004002 + MIR SINE MIR 37 252 -10 223 325 12 0 chr3 44033321 44033401 -174003757 - MIR3 SINE MIR -3 205 125 30 17 8 0 chr3 44033922 44034005 -174003153 + AT_rich Low_complexity Low_complexity 1 37 0 3770 29 0 0 chr3 44034266 44034711 -174002447 + L1PA4 LINE L1 5708 6152 -3 2461 226 8 0 chr3 44036038 44036623 -174000535 + L1 LINE L1 4203 4792 -1354 1026 146 4 2 chr3 44036624 44036864 -174000294 + AluSx SINE Alu 1 290 -22 5387 167 20 17 chr3 44036865 44038213 -173998945 + L1PA16 LINE L1 4800 6157 -9 21 36 0 0 chr3 44038897 44038925 -173998233 + AT_rich Low_complexity Low_complexity 1 28 0 1243 196 21 17 chr3 44039662 44039902 -173997256 - AluJo SINE Alu -36 276 36 206 239 0 0 chr3 44040086 44040132 -173997026 - L2 LINE L2 -6 3266 3221 305 284 13 97 chr3 44041732 44041887 -173995271 + L2 LINE L2 2945 3086 -186 202 283 0 0 chr3 44042034 44042087 -173995071 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 26 0 0 0 chr3 44042283 44042309 -173994849 + AT_rich Low_complexity Low_complexity 1 26 0 691 216 7 0 chr3 44043368 44043516 -173993642 - L1M4 LINE L1 -453 5721 5573 1052 317 30 25 chr3 44043516 44043745 -173993413 - L2 LINE L2 -565 2749 2516 2166 114 0 7 chr3 44043745 44044042 -173993116 + AluSg SINE Alu 1 295 -15 1052 317 30 25 chr3 44044042 44044244 -173992914 - L2 LINE L2 -798 2516 2316 786 303 122 16 chr3 44044246 44044622 -173992536 - MLT1H LTR MaLR -1 548 133 21 36 0 0 chr3 44044701 44044729 -173992429 + AT_rich Low_complexity Low_complexity 1 28 0 199 328 114 8 chr3 44044792 44044923 -173992235 - L2 LINE L2 -1158 2156 2012 212 266 16 47 chr3 44045631 44045695 -173991463 - MIR SINE MIR -31 231 170 623 365 33 16 chr3 44045857 44046161 -173990997 + LTR16C LTR ERVL 183 491 0 8005 150 35 3 chr3 44046434 44048604 -173988554 + L1PA11 LINE L1 3973 6174 0 211 303 92 39 chr3 44048828 44049057 -173988101 - MIR SINE MIR 0 262 12 4151 165 20 37 chr3 44049813 44050678 -173986480 - L1MB2 LINE L1 -2 6169 5320 547 200 9 9 chr3 44050679 44050784 -173986374 - U6 snRNA snRNA 0 107 3 600 292 69 46 chr3 44051412 44051717 -173985441 + L2 LINE L2 2968 3279 -34 277 252 309 0 chr3 44052017 44052140 -173985018 - MER5A DNA MER1_type 0 189 29 378 337 101 46 chr3 44052173 44052648 -173984510 - L2 LINE L2 -669 2645 2145 414 286 125 29 chr3 44053097 44053682 -173983476 + L1MDa LINE L1 2439 3101 -3439 1831 143 3 39 chr3 44053827 44054135 -173983023 + AluSx SINE Alu 1 297 -15 1514 58 0 0 chr3 44054149 44054337 -173982821 - L1PA4 LINE L1 -350 5805 5618 2973 42 0 0 chr3 44054337 44054695 -173982463 + L1PA4 LINE L1 5794 6152 -3 31 44 0 0 chr3 44055465 44055510 -173981648 + AT_rich Low_complexity Low_complexity 1 45 0 1638 162 133 16 chr3 44055807 44056190 -173980968 + MSTA LTR MaLR 1 428 0 519 239 236 19 chr3 44056370 44056633 -173980525 - LTR50 LTR ERVL -475 320 1 607 255 103 94 chr3 44057175 44057602 -173979556 - MLT1H1 LTR MaLR 0 555 125 186 43 0 0 chr3 44058216 44058239 -173978919 + (TTA)n Simple_repeat Simple_repeat 2 24 0 231 287 11 23 chr3 44058504 44058591 -173978567 + L1MEd LINE L1 413 498 -6032 259 328 0 0 chr3 44058947 44059011 -173978147 + (CATG)n Simple_repeat Simple_repeat 3 66 0 203 234 31 0 chr3 44059442 44059506 -173977652 + (TA)n Simple_repeat Simple_repeat 1 66 0 266 268 71 50 chr3 44059583 44059781 -173977377 + L1MEd LINE L1 1442 1643 -4887 347 255 61 106 chr3 44059795 44059995 -173977163 + L1MEd LINE L1 1623 1809 -4731 1941 133 30 0 chr3 44059995 44060296 -173976862 + AluSx SINE Alu 1 310 -2 347 255 61 106 chr3 44060296 44060359 -173976799 + L1MEd LINE L1 1809 1873 -4667 304 230 61 31 chr3 44060767 44060983 -173976175 - L1MCc LINE L1 -4922 1501 1393 23 0 0 0 chr3 44061632 44061655 -173975503 + AT_rich Low_complexity Low_complexity 1 23 0 250 219 16 16 chr3 44061725 44061789 -173975369 - L1M LINE L1 -763 5415 5352 333 68 0 0 chr3 44061805 44061849 -173975309 + (TA)n Simple_repeat Simple_repeat 2 45 0 491 334 68 19 chr3 44061906 44062424 -173974734 - L1M4 LINE L1 -906 5240 4698 273 250 22 11 chr3 44062487 44062579 -173974579 - L1ME3 LINE L1 -7 6155 6063 294 29 0 0 chr3 44062596 44062631 -173974527 + (CA)n Simple_repeat Simple_repeat 2 36 0 475 301 88 72 chr3 44062707 44063013 -173974145 + MLT1H LTR MaLR 62 372 -177 547 285 43 66 chr3 44063304 44063494 -173973664 - L1M4 LINE L1 -1692 4454 4274 4320 28 0 0 chr3 44063494 44064002 -173973156 + L1PA5 LINE L1 5636 6143 -11 547 285 43 66 chr3 44064002 44064158 -173973000 - L1M4 LINE L1 -1872 4274 4116 371 316 16 37 chr3 44064166 44064353 -173972805 - L1M4 LINE L1 -2102 4044 3862 468 271 98 43 chr3 44064753 44065355 -173971803 - L1M4 LINE L1 -2979 3167 2533 424 259 35 7 chr3 44065404 44065547 -173971611 + L1MA10 LINE L1 6184 6330 -4 278 227 82 0 chr3 44065543 44065640 -173971518 + L1M4 LINE L1 3840 3944 -2202 * 216 67 0 0 chr3 44065720 44065750 -173971408 + (CA)n Simple_repeat Simple_repeat 2 31 0 662 260 31 0 chr3 44065962 44066158 -173971000 + MER105 DNA DNA 1 202 -2 24 32 0 0 chr3 44066524 44066555 -173970603 + AT_rich Low_complexity Low_complexity 1 31 0 2581 64 0 0 chr3 44067008 44067319 -173969839 - AluY SINE Alu 0 311 1 23 0 0 0 chr3 44067392 44067415 -173969743 + AT_rich Low_complexity Low_complexity 1 23 0 278 294 172 31 chr3 44067418 44067744 -173969414 - MLT1L LTR MaLR -27 588 217 860 235 48 118 chr3 44067873 44068290 -173968868 + MSTD LTR MaLR 9 396 0 351 226 89 16 chr3 44068482 44068606 -173968552 + MER94 DNA DNA 2 134 0 378 355 43 0 chr3 44068947 44069133 -173968025 + L2 LINE L2 3120 3313 0 9204 216 23 55 chr3 44069559 44071685 -173965473 + L1M2 LINE L1 3 2060 -4789 22089 189 17 17 chr3 44071688 44075281 -173961877 + L1PA11 LINE L1 2 3592 -4020 180 0 0 0 chr3 44075281 44075301 -173961857 + (CAA)n Simple_repeat Simple_repeat 2 21 0 22089 189 17 17 chr3 44075301 44075790 -173961368 + L1PA11 LINE L1 3592 4079 -3533 2105 147 0 0 chr3 44075790 44076090 -173961068 + AluSx SINE Alu 1 300 -12 22089 189 17 17 chr3 44076090 44078262 -173958896 + L1PA11 LINE L1 4079 7612 0 4313 196 42 33 chr3 44078237 44079483 -173957675 + L1M2 LINE L1 2044 3276 -3572 * 1592 195 0 29 chr3 44079483 44079791 -173957367 + AluJb SINE Alu 4 302 -10 4313 196 42 33 chr3 44079791 44079946 -173957212 + L1M2 LINE L1 3276 3428 -3420 1951 177 0 0 chr3 44079946 44080246 -173956912 - AluSx SINE Alu -12 300 1 4313 196 42 33 chr3 44080246 44080579 -173956579 + L1M2 LINE L1 3428 3792 -3056 21 36 0 0 chr3 44080599 44080627 -173956531 + AT_rich Low_complexity Low_complexity 1 28 0 361 320 176 29 chr3 44080772 44081453 -173955705 + L1M4 LINE L1 2678 3458 -2688 24 0 0 0 chr3 44081456 44081480 -173955678 + AT_rich Low_complexity Low_complexity 1 24 0 625 222 94 11 chr3 44081684 44081769 -173955389 - MER3 DNA MER1_type -1 208 131 2132 91 33 26 chr3 44081769 44082076 -173955082 - AluSx SINE Alu -1 311 3 625 222 94 11 chr3 44082076 44082170 -173954988 - MER3 DNA MER1_type -78 131 14 230 241 35 0 chr3 44082397 44082455 -173954703 - MIR SINE MIR -118 144 85 233 280 0 0 chr3 44082867 44082917 -173954241 + L2 LINE L2 3210 3259 -13 252 77 0 0 chr3 44083164 44083203 -173953955 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1779 143 68 3 chr3 44083927 44084248 -173952910 - AluSq SINE Alu 0 340 1 248 263 27 104 chr3 44085146 44085309 -173951849 - MIR SINE MIR -66 196 38 186 304 18 0 chr3 44086043 44086099 -173951059 - MIR SINE MIR -120 142 86 238 361 24 0 chr3 44086348 44086431 -173950727 - L3 LINE CR1 -27 1550 1466 2384 92 0 0 chr3 44087436 44087741 -173949417 + AluSg SINE Alu 1 305 -5 351 0 0 0 chr3 44087757 44087796 -173949362 + (TG)n Simple_repeat Simple_repeat 2 40 0 232 283 162 0 chr3 44089830 44089929 -173947229 + MIR3 SINE MIR 55 169 -39 1044 213 9 32 chr3 44089952 44090173 -173946985 - MER20 DNA MER1_type 0 219 4 2000 131 3 14 chr3 44090911 44091202 -173945956 - AluSx SINE Alu -24 288 1 318 206 0 0 chr3 44092218 44092291 -173944867 - L1MB8 LINE L1 -13 6165 6093 3978 208 26 27 chr3 44092303 44092416 -173944742 - L1MB4 LINE L1 0 6180 6068 2104 138 7 0 chr3 44092416 44092721 -173944437 - AluSx SINE Alu -5 307 1 3978 208 26 27 chr3 44092721 44093602 -173943556 - L1MB4 LINE L1 -112 6068 5202 2669 145 25 0 chr3 44093602 44094051 -173943107 - L1PB3 LINE L1 -5 6149 5690 3978 208 26 27 chr3 44094051 44094128 -173943030 - L1MB4 LINE L1 -978 5202 5126 888 271 27 9 chr3 44094460 44094685 -173942473 - L1M4b LINE L1 -6619 240 12 185 361 68 45 chr3 44096494 44096627 -173940531 - L2 LINE L2 0 3272 3137 468 0 0 0 chr3 44096638 44096690 -173940468 + (CA)n Simple_repeat Simple_repeat 1 52 0 5942 29 0 0 chr3 44097767 44098501 -173938657 + L1PA3 LINE L1 5444 6177 0 457 253 11 68 chr3 44100093 44100283 -173936875 + MER96B DNA MER1_type? 1 179 -238 311 335 88 29 chr3 44101569 44101978 -173935180 + HAL1 LINE L1 1208 1640 -867 2029 136 3 0 chr3 44102020 44102321 -173934837 - AluSg SINE Alu -8 302 1 327 248 21 28 chr3 44102452 44102736 -173934422 + (CAATA)n Simple_repeat Simple_repeat 1 281 0 320 294 70 7 chr3 44102916 44103059 -173934099 + HAL1b LINE L1 760 911 -437 181 57 57 0 chr3 44103255 44103290 -173933868 + (TA)n Simple_repeat Simple_repeat 1 37 0 2782 142 29 0 chr3 44104168 44104620 -173932538 + LTR24 LTR ERV1 3 467 0 2020 139 0 7 chr3 44105087 44105397 -173931761 - AluSq SINE Alu -5 308 1 37 23 0 0 chr3 44105487 44105531 -173931627 + AT_rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr3 44105626 44105663 -173931495 + AT_rich Low_complexity Low_complexity 1 37 0 213 154 0 0 chr3 44106353 44106392 -173930766 + (TG)n Simple_repeat Simple_repeat 2 40 0 511 237 70 23 chr3 44106502 44106638 -173930520 + MER5B DNA MER1_type 4 129 -49 2079 135 3 0 chr3 44107723 44108026 -173929132 + AluSg SINE Alu 4 307 -3 1927 157 25 16 chr3 44108586 44108950 -173928208 + LTR23 LTR ERV1 71 437 0 203 288 34 17 chr3 44109383 44109442 -173927716 - MIR3 SINE MIR -41 167 108 2040 110 0 31 chr3 44110566 44110907 -173926251 + AluSg SINE Alu 1 332 0 239 222 62 12 chr3 44111156 44111237 -173925921 + L1ME LINE L1 3875 3959 -2187 182 219 24 0 chr3 44111472 44111513 -173925645 + L2 LINE L2 3186 3227 -86 445 291 102 55 chr3 44112376 44112720 -173924438 + L1ME LINE L1 5296 5655 -466 376 292 125 16 chr3 44113702 44113894 -173923264 - MLT1L LTR MaLR -221 394 182 22 70 0 0 chr3 44114188 44114231 -173922927 + AT_rich Low_complexity Low_complexity 1 43 0 266 350 25 17 chr3 44115609 44115729 -173921429 - MIR SINE MIR -15 247 127 2111 194 84 98 chr3 44115748 44116485 -173920673 - LTR8A LTR ERV1 0 727 1 1117 289 23 3 chr3 44116487 44116792 -173920366 - HUERS-P1 LTR ERV1 -1 6262 5952 2838 155 2 2 chr3 44116897 44117513 -173919645 - L1PA14 LINE L1 -700 5451 4842 5175 90 3 4 chr3 44117514 44118235 -173918923 + L1PA14 LINE L1 5438 6157 -4 5581 206 111 109 chr3 44118288 44119462 -173917696 - HUERS-P1 LTR ERV1 -411 5852 4681 851 195 30 0 chr3 44119462 44119631 -173917527 + FRAM SINE Alu 1 173 -3 5581 206 111 109 chr3 44119631 44121037 -173916121 - HUERS-P1 LTR ERV1 -1582 4681 3101 1119 288 121 33 chr3 44121263 44121449 -173915709 - MLT1G LTR MaLR -24 566 398 2221 183 39 7 chr3 44121449 44121860 -173915298 - MSTB LTR MaLR -2 424 1 1119 288 121 33 chr3 44121860 44122229 -173914929 - MLT1G LTR MaLR -192 398 1 2714 96 0 0 chr3 44122602 44122966 -173914192 - THE1B LTR MaLR 0 364 1 264 252 79 47 chr3 44123462 44123589 -173913569 - Charlie8 DNA MER1_type -2212 205 75 509 354 63 67 chr3 44124331 44124868 -173912290 - L1MC/D LINE L1 -1988 5820 5286 3105 225 76 36 chr3 44124930 44126158 -173911000 - L1MA6 LINE L1 -10 6290 5019 3141 205 20 10 chr3 44126178 44126870 -173910288 - L1MA6 LINE L1 -1701 4445 3747 487 196 0 11 chr3 44126871 44126963 -173910195 + Tigger2a DNA MER2_type 1 91 -343 207 0 0 0 chr3 44126994 44127017 -173910141 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 438 69 0 0 chr3 44127016 44127074 -173910084 + (TA)n Simple_repeat Simple_repeat 1 58 0 1717 200 47 6 chr3 44127101 44127441 -173909717 + Tigger2a DNA MER2_type 91 444 0 5030 227 30 17 chr3 44127478 44128886 -173908272 - L1MA6 LINE L1 -2468 3678 2253 2197 157 19 11 chr3 44128896 44129271 -173907887 - Tigger1 DNA MER2_type -1993 425 48 34 72 0 0 chr3 44129334 44129403 -173907755 + AT_rich Low_complexity Low_complexity 1 69 0 534 292 101 29 chr3 44130258 44130962 -173906196 + L1ME LINE L1 717 1527 -4734 1018 309 40 13 chr3 44131078 44131700 -173905458 + L1ME LINE L1 3140 3778 -2302 * 1453 219 156 11 chr3 44131693 44132132 -173905026 + L1ME3A LINE L1 5654 6154 -10 22 70 0 0 chr3 44132913 44132956 -173904202 + AT_rich Low_complexity Low_complexity 1 43 0 201 182 0 0 chr3 44134550 44134583 -173902575 + T-rich Low_complexity Low_complexity 6 38 0 474 75 0 0 chr3 44135516 44135583 -173901575 + (ATG)n Simple_repeat Simple_repeat 2 68 0 501 203 14 7 chr3 44136218 44136366 -173900792 + GA-rich Low_complexity Low_complexity 3 151 0 1256 186 74 35 chr3 44136423 44136735 -173900423 - MER33 DNA MER1_type 0 324 1 693 241 123 6 chr3 44136735 44136905 -173900253 + LTR16A1 LTR ERVL 265 454 -3 432 293 153 0 chr3 44138087 44138237 -173898921 + MIR3 SINE MIR 36 208 0 206 208 83 0 chr3 44138387 44138435 -173898723 + MIR SINE MIR 128 179 -83 247 353 29 29 chr3 44139844 44139980 -173897178 - L2 LINE L2 0 3272 3137 309 318 71 56 chr3 44140284 44140482 -173896676 + MIR SINE MIR 2 202 -60 1668 222 34 49 chr3 44141037 44141506 -173895652 - MLT1C LTR MaLR 0 467 6 23 33 0 0 chr3 44141897 44141927 -173895231 + AT_rich Low_complexity Low_complexity 1 30 0 245 318 68 11 chr3 44142572 44142660 -173894498 + L2 LINE L2 2889 2981 -291 24 0 0 0 chr3 44142714 44142738 -173894420 + AT_rich Low_complexity Low_complexity 1 24 0 271 263 29 44 chr3 44142955 44143092 -173894066 - MLT1L LTR MaLR -296 319 185 180 97 0 0 chr3 44143425 44143456 -173893702 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 119 356 0 chr3 44143470 44143529 -173893629 - MADE1 DNA Mariner 0 80 1 580 282 92 0 chr3 44143766 44143940 -173893218 + MER3 DNA MER1_type 15 204 -5 214 258 299 0 chr3 44144738 44144835 -173892323 + MIR SINE MIR 81 206 -56 27 49 0 0 chr3 44147167 44147208 -173889950 + AT_rich Low_complexity Low_complexity 1 41 0 538 235 39 26 chr3 44147818 44147971 -173889187 + MIR SINE MIR 69 223 -39 338 272 103 58 chr3 44148400 44148661 -173888497 + L1MC2 LINE L1 1127 1399 -5235 199 128 26 39 chr3 44148665 44148677 -173888481 + (TA)n Simple_repeat Simple_repeat 1 12 -65 590 88 0 0 chr3 44148677 44148757 -173888401 + MADE1 DNA Mariner 1 80 0 199 128 26 39 chr3 44148757 44148822 -173888336 + (TA)n Simple_repeat Simple_repeat 12 77 0 3099 250 30 3 chr3 44148824 44149704 -173887454 + L1MC2 LINE L1 4954 5856 -788 3875 185 27 28 chr3 44149710 44150152 -173887006 + L1MC2 LINE L1 5944 6385 -457 2102 127 38 24 chr3 44150152 44150522 -173886636 - THE1C LTR MaLR 0 375 1 3875 185 27 28 chr3 44150522 44150970 -173886188 + L1MC2 LINE L1 6385 6833 -9 300 332 28 65 chr3 44150971 44151188 -173885970 + L1ME LINE L1 1297 1505 -5037 529 296 72 35 chr3 44151235 44151583 -173885575 + L1ME LINE L1 1649 2009 -4816 300 258 22 0 chr3 44151718 44151807 -173885351 - MIR SINE MIR 0 262 172 436 208 8 67 chr3 44151807 44151927 -173885231 - MER63 DNA MER1_type -97 739 1 186 43 0 0 chr3 44152461 44152484 -173884674 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 338 276 188 21 chr3 44152924 44153116 -173884042 + MIR SINE MIR 25 248 -14 411 349 13 7 chr3 44153301 44153453 -173883705 - MER5A DNA MER1_type -1 188 36 246 369 34 13 chr3 44153319 44153468 -173883690 + MER5A DNA MER1_type 32 183 -6 * 732 256 44 0 chr3 44153795 44153955 -173883203 + MER45A DNA AcHobo 1 167 -11 247 358 33 0 chr3 44154869 44154989 -173882169 + MIR SINE MIR 49 172 -90 2295 84 0 0 chr3 44155420 44155716 -173881442 + AluY SINE Alu 1 296 -15 899 174 20 61 chr3 44155862 44156058 -173881100 - MER5A DNA MER1_type -1 188 1 273 98 0 0 chr3 44156593 44156634 -173880524 + (TG)n Simple_repeat Simple_repeat 2 42 0 407 283 113 70 chr3 44157938 44158398 -173878760 + HAL1 LINE L1 875 1354 -1153 291 393 27 9 chr3 44158401 44158620 -173878538 + L1MEc LINE L1 149 371 -6025 320 322 7 13 chr3 44158980 44159132 -173878026 + L1MEc LINE L1 705 855 -5541 1921 260 63 54 chr3 44159178 44159977 -173877181 + L1MEc LINE L1 2024 2805 -3410 1759 170 97 30 chr3 44159977 44160378 -173876780 - MSTC LTR MaLR 0 428 1 1921 260 63 54 chr3 44160378 44161133 -173876025 + L1MEc LINE L1 2805 3552 -2663 1474 329 66 11 chr3 44161138 44161701 -173875457 + L1PA13 LINE L1 19 612 -6175 10523 245 37 14 chr3 44161977 44163137 -173874021 + L1PA13 LINE L1 1341 2473 -4324 1991 117 6 50 chr3 44163137 44163454 -173873704 - AluSq SINE Alu -10 303 1 10523 245 37 14 chr3 44163454 44166031 -173871127 + L1PA13 LINE L1 2473 5166 -1631 264 272 174 10 chr3 44166050 44166245 -173870913 + L1MEc LINE L1 4496 4722 -1493 357 226 68 55 chr3 44166311 44166457 -173870701 + L1MEc LINE L1 4925 5072 -1143 23 33 0 0 chr3 44166541 44166571 -173870587 + AT_rich Low_complexity Low_complexity 1 30 0 1748 201 28 42 chr3 44166657 44167056 -173870102 - Charlie1 DNA MER1_type 0 2761 2369 1403 205 16 68 chr3 44167056 44167286 -173869872 - MLT1A1 LTR MaLR 0 365 161 2264 117 0 0 chr3 44167286 44167595 -173869563 - AluSg SINE Alu -1 309 1 1403 205 16 68 chr3 44167595 44167749 -173869409 - MLT1A1 LTR MaLR -204 161 1 1748 201 28 42 chr3 44167749 44167851 -173869307 - Charlie1 DNA MER1_type -392 2369 2267 822 227 23 0 chr3 44167853 44168025 -173869133 + FRAM SINE Alu 1 174 -2 605 204 22 0 chr3 44168029 44168166 -173868992 - Charlie1 DNA MER1_type -483 2278 2139 513 331 33 18 chr3 44168948 44169223 -173867935 - MLT1K LTR MaLR -54 534 256 738 124 0 0 chr3 44170050 44170171 -173866987 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 189 121 0 0 chr3 44170587 44170620 -173866538 + (CA)n Simple_repeat Simple_repeat 2 34 0 318 286 67 8 chr3 44171520 44171639 -173865519 + MLT1H LTR MaLR 1 126 -423 1617 212 11 72 chr3 44171685 44172142 -173865016 + MER63B DNA MER1_type 2 430 -6 907 278 77 84 chr3 44173245 44173865 -173863293 + L2 LINE L2 2692 3313 0 215 118 0 0 chr3 44175172 44175206 -173861952 + MIR SINE MIR 203 236 -26 267 321 224 28 chr3 44175277 44175567 -173861591 - L2 LINE L2 -571 2743 2397 2663 39 0 3 chr3 44176336 44176648 -173860510 + AluY SINE Alu 1 311 0 274 305 12 0 chr3 44176662 44176744 -173860414 - L2 LINE L2 -596 2718 2636 1996 148 3 0 chr3 44176787 44177084 -173860074 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 44177084 44177112 -173860046 + AT_rich Low_complexity Low_complexity 1 28 0 419 294 239 6 chr3 44177314 44177494 -173859664 + MIR SINE MIR 41 262 0 275 281 50 38 chr3 44178336 44178496 -173858662 + MIR3 SINE MIR 40 201 -7 377 359 0 0 chr3 44178893 44179010 -173858148 + L2 LINE L2 3197 3313 0 786 311 111 37 chr3 44179098 44179558 -173857600 - MLT1G LTR MaLR 0 590 97 21 57 0 0 chr3 44179848 44179883 -173857275 + AT_rich Low_complexity Low_complexity 1 35 0 386 127 14 0 chr3 44180390 44180461 -173856697 + (CA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chr3 44180780 44180803 -173856355 + AT_rich Low_complexity Low_complexity 1 23 0 215 329 4 123 chr3 44181340 44181408 -173855750 - MIR SINE MIR -59 203 129 2412 85 3 0 chr3 44181408 44181715 -173855443 - AluY SINE Alu -3 308 1 215 329 4 123 chr3 44181715 44181874 -173855284 - MIR SINE MIR -133 129 3 1141 203 22 4 chr3 44183422 44183654 -173853504 - MER96B DNA MER1_type? -181 236 1 180 0 0 0 chr3 44183688 44183708 -173853450 + (T)n Simple_repeat Simple_repeat 1 20 0 330 280 34 0 chr3 44184836 44184954 -173852204 + MER103 DNA DNA 1 122 -44 2341 115 56 8 chr3 44184973 44185330 -173851828 - THE1C LTR MaLR 0 375 2 10099 128 32 7 chr3 44185331 44186728 -173850430 - THE1C-int LTR MaLR 0 1580 139 1997 157 49 76 chr3 44186728 44187174 -173849984 + MER61C LTR ERV1 1 434 0 10099 128 32 7 chr3 44187174 44187317 -173849841 - THE1C-int LTR MaLR -1441 139 1 2554 120 5 8 chr3 44187317 44187693 -173849465 - THE1C LTR MaLR 0 375 1 255 152 0 0 chr3 44188769 44188815 -173848343 + (AATTG)n Simple_repeat Simple_repeat 3 48 0 191 254 15 60 chr3 44189687 44189754 -173847404 + MIR SINE MIR 79 142 -66 545 380 16 8 chr3 44189770 44190020 -173847138 - MIR SINE MIR -8 254 3 1547 91 0 0 chr3 44190868 44191076 -173846082 - AluY SINE Alu -3 308 101 201 308 132 22 chr3 44191496 44191587 -173845571 - L2 LINE L2 -5 3267 3167 1054 172 23 16 chr3 44191977 44192305 -173844853 + L1PA16 LINE L1 5147 5476 -690 1201 150 13 53 chr3 44192305 44192531 -173844627 + AluJb SINE Alu 87 303 -9 2112 135 7 0 chr3 44192531 44192835 -173844323 + AluSp SINE Alu 1 306 -7 4071 137 27 3 chr3 44192846 44193511 -173843647 + L1PA16 LINE L1 5477 6157 -9 21 36 0 0 chr3 44195237 44195265 -173841893 + AT_rich Low_complexity Low_complexity 1 28 0 553 298 181 19 chr3 44196605 44197024 -173840134 - MLT1H LTR MaLR -2 547 61 1240 204 23 77 chr3 44197646 44198088 -173839070 - Charlie1 DNA MER1_type -1 2760 2343 251 268 0 0 chr3 44198085 44198141 -173839017 - Charlie1 DNA MER1_type -2698 63 8 * 198 268 52 0 chr3 44198942 44199020 -173838138 + MIR SINE MIR 71 147 -61 225 361 96 0 chr3 44199456 44199622 -173837536 - MIR SINE MIR -74 188 7 195 42 0 0 chr3 44199947 44199971 -173837187 + (ATG)n Simple_repeat Simple_repeat 2 25 0 240 393 130 20 chr3 44200808 44201470 -173835688 - L2 LINE L2 -609 2705 1971 517 385 88 18 chr3 44201571 44202312 -173834846 - L2 LINE L2 -522 2792 2000 2217 117 0 0 chr3 44202337 44202644 -173834514 + AluSc SINE Alu 1 307 -2 315 318 82 29 chr3 44203597 44203767 -173833391 + MIR SINE MIR 70 248 -14 28 29 0 0 chr3 44205147 44205182 -173831976 + AT_rich Low_complexity Low_complexity 1 35 0 378 217 0 0 chr3 44205353 44205468 -173831690 + (TA)n Simple_repeat Simple_repeat 1 115 0 281 303 49 37 chr3 44206127 44206289 -173830869 - MIR SINE MIR -50 212 49 363 339 31 26 chr3 44206293 44206485 -173830673 - L2 LINE L2 -1 3312 3120 287 299 124 60 chr3 44207163 44207352 -173829806 + MIR SINE MIR 10 207 -55 2733 136 19 0 chr3 44207643 44208063 -173829095 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr3 44208437 44208459 -173828699 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2889 16 0 0 chr3 44210335 44210653 -173826505 - AluYb8 SINE Alu 0 318 1 197 303 67 106 chr3 44211083 44211291 -173825867 - L3 LINE CR1 -12 1565 1366 369 302 26 68 chr3 44211529 44211721 -173825437 + MIR SINE MIR 42 225 -37 331 248 108 31 chr3 44212739 44212868 -173824290 + MIR SINE MIR 74 212 -50 261 0 0 0 chr3 44212939 44212968 -173824190 + (TG)n Simple_repeat Simple_repeat 2 30 0 603 212 104 37 chr3 44213227 44213468 -173823690 - MER63 DNA MER1_type 0 1062 806 1324 186 156 16 chr3 44213497 44213804 -173823354 + MLT1F1 LTR MaLR 120 469 -98 322 376 28 14 chr3 44214007 44214294 -173822864 - MER89-int LTR ERV1 -3082 3719 3429 27 62 0 0 chr3 44215114 44215162 -173821996 + AT_rich Low_complexity Low_complexity 1 48 0 29 60 0 0 chr3 44215673 44215723 -173821435 + AT_rich Low_complexity Low_complexity 1 50 0 312 27 0 0 chr3 44216997 44217034 -173820124 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 21 36 0 0 chr3 44217919 44217947 -173819211 + AT_rich Low_complexity Low_complexity 1 28 0 237 346 0 19 chr3 44218007 44218111 -173819047 - HAL1 LINE L1 -803 1704 1603 198 380 58 7 chr3 44218114 44218251 -173818907 - L2 LINE L2 -202 3070 2927 324 322 46 54 chr3 44218505 44218766 -173818392 - L2 LINE L2 -616 2698 2440 2224 69 29 0 chr3 44219905 44220180 -173816978 + AluY SINE Alu 21 303 -8 3934 141 9 3 chr3 44220914 44221545 -173815613 + L1PB3 LINE L1 5520 6154 0 21 0 0 0 chr3 44221545 44221566 -173815592 + AT_rich Low_complexity Low_complexity 1 21 0 3523 263 102 92 chr3 44221651 44222012 -173815146 + L2 LINE L2 455 811 -2503 2056 103 32 3 chr3 44222012 44222294 -173814864 - AluSc SINE Alu -19 290 1 3523 263 102 92 chr3 44222294 44222731 -173814427 + L2 LINE L2 811 1242 -2072 1150 199 145 15 chr3 44222731 44222993 -173814165 - AluJo SINE Alu -4 298 3 3523 263 102 92 chr3 44222993 44223590 -173813568 + L2 LINE L2 1242 1832 -1482 326 322 9 9 chr3 44223590 44223705 -173813453 - MER94 DNA DNA -4 130 16 3523 263 102 92 chr3 44223705 44224319 -173812839 + L2 LINE L2 1832 2600 -714 5606 202 48 39 chr3 44224647 44227497 -173809661 - L1MC2 LINE L1 -2 6760 3891 2207 135 19 14 chr3 44227502 44227864 -173809294 + THE1B LTR MaLR 1 364 0 2563 247 94 34 chr3 44227865 44228792 -173808366 - L1MC2 LINE L1 -2825 3739 2756 1496 223 21 116 chr3 44228792 44229362 -173807796 + MLT2B1 LTR ERVL 5 520 0 2563 247 94 34 chr3 44229362 44229675 -173807483 - L1MC2 LINE L1 -3808 2756 2463 3349 200 89 40 chr3 44229694 44231050 -173806108 - L1MC2 LINE L1 -4399 2165 696 2648 196 55 62 chr3 44231050 44231743 -173805415 + LTR8 LTR ERV1 3 690 -1 3349 200 89 40 chr3 44231743 44231830 -173805328 - L1MC2 LINE L1 -5868 696 615 412 301 31 31 chr3 44232645 44232808 -173804350 - L2 LINE L2 -6 3307 3145 180 343 146 19 chr3 44233006 44233219 -173803939 + L2 LINE L2 1854 2093 -1221 592 171 17 25 chr3 44233604 44233845 -173803313 + (TA)n Simple_repeat Simple_repeat 1 239 0 181 245 94 0 chr3 44233848 44233901 -173803257 + L2 LINE L2 3255 3312 -1 269 313 76 30 chr3 44233981 44234112 -173803046 - L2 LINE L2 -3 3269 3133 26 0 0 0 chr3 44235535 44235561 -173801597 + AT_rich Low_complexity Low_complexity 1 26 0 316 59 39 0 chr3 44235884 44235935 -173801223 + (TC)n Simple_repeat Simple_repeat 1 53 0 368 281 100 56 chr3 44235946 44236177 -173800981 - L1ME3A LINE L1 -11 6159 5919 359 278 201 48 chr3 44236283 44236771 -173800387 - L2 LINE L2 -37 3276 2710 2223 84 3 7 chr3 44236771 44237070 -173800088 - AluY SINE Alu -13 298 1 359 278 201 48 chr3 44237070 44237121 -173800037 - L2 LINE L2 -603 2710 2668 273 338 50 7 chr3 44237864 44238003 -173799155 + MIR SINE MIR 47 191 -71 716 146 76 21 chr3 44238770 44238914 -173798244 - MER61B LTR ERV1 0 425 274 287 188 0 0 chr3 44238913 44238961 -173798197 - MER61A LTR ERV1 -295 48 1 * 13702 96 24 50 chr3 44238961 44241119 -173796039 - MER61A-int LTR ERV1 0 5217 3116 323 303 58 13 chr3 44241121 44241276 -173795882 + MIR SINE MIR 39 200 -62 515 130 24 57 chr3 44241277 44241400 -173795758 + L1MA8 LINE L1 6173 6291 0 29 0 0 0 chr3 44241465 44241494 -173795664 + AT_rich Low_complexity Low_complexity 1 29 0 263 368 49 12 chr3 44241575 44241738 -173795420 + MIR3 SINE MIR 40 208 0 203 371 9 19 chr3 44241884 44241989 -173795169 + MIR3 SINE MIR 87 190 -18 536 335 81 70 chr3 44242260 44242816 -173794342 - L2 LINE L2 -705 2609 2048 2282 119 119 8 chr3 44245972 44246357 -173790801 - MSTA LTR MaLR 0 428 1 362 356 23 0 chr3 44247784 44247916 -173789242 - L2 LINE L2 0 3313 3179 201 314 0 0 chr3 44248326 44248377 -173788781 + MIR SINE MIR 201 251 -11 2081 138 0 7 chr3 44248446 44248751 -173788407 - AluSx SINE Alu -9 303 1 1290 246 65 6 chr3 44250784 44251105 -173786053 + L1M3e LINE L1 1 340 -6690 2310 270 77 39 chr3 44251115 44254284 -173782874 + L1M3e LINE L1 1075 3973 -3133 1767 206 60 5 chr3 44254848 44255250 -173781908 - MLT1C LTR MaLR -6 461 38 195 259 247 12 chr3 44255602 44255683 -173781475 - MIR SINE MIR -78 130 31 2169 216 62 41 chr3 44255958 44256671 -173780487 + L1M3e LINE L1 4810 5537 -1569 2008 189 41 14 chr3 44256916 44257333 -173779825 + MSTC LTR MaLR 1 428 0 1228 271 42 31 chr3 44257346 44257771 -173779387 + MSTC-int LTR MaLR 15 444 -1207 1284 242 92 3 chr3 44257773 44258132 -173779026 + MSTC-int LTR MaLR 1255 1645 -6 1717 204 41 6 chr3 44258141 44258485 -173778673 + MSTC LTR MaLR 5 360 -68 492 305 82 44 chr3 44259713 44260094 -173777064 + LTR16C LTR ERVL 73 444 -13 496 100 71 0 chr3 44260255 44260565 -173776593 + (TA)n Simple_repeat Simple_repeat 1 332 0 28 0 0 0 chr3 44261292 44261320 -173775838 + AT_rich Low_complexity Low_complexity 1 28 0 2210 92 11 0 chr3 44262690 44262973 -173774185 + AluSx SINE Alu 1 286 -26 253 210 16 0 chr3 44263000 44263062 -173774096 + GA-rich Low_complexity Low_complexity 2 64 0 1414 249 136 21 chr3 44263661 44264147 -173773011 + MLT1F LTR MaLR 1 542 0 598 303 88 54 chr3 44265026 44265343 -173771815 + MLT2F LTR ERVL 159 486 -177 309 75 0 0 chr3 44265438 44265478 -173771680 + MLT2F LTR ERVL 573 612 -51 1132 238 38 16 chr3 44267554 44267999 -173769159 + L1M4c LINE L1 2234 2689 -3693 13672 140 32 22 chr3 44268057 44270398 -173766760 + Tigger1 DNA MER2_type 55 2418 0 2076 248 83 14 chr3 44270405 44271300 -173765858 + L1M4c LINE L1 2703 3658 -2724 1185 193 26 42 chr3 44271302 44271613 -173765545 + L1M4c LINE L1 3801 4106 -2276 288 122 122 0 chr3 44271610 44271659 -173765499 + L1M4 LINE L1 5523 5577 -607 * 4381 198 6 9 chr3 44271665 44272567 -173764591 - L1 LINE L1 -1609 5956 5058 555 253 34 0 chr3 44272577 44272723 -173764435 - L1 LINE L1 -3571 3994 3844 2014 132 0 30 chr3 44272728 44273031 -173764127 - AluSx SINE Alu -18 294 1 1924 268 59 46 chr3 44273033 44273073 -173764085 - L1 LINE L1 -3857 3708 3670 2200 105 14 0 chr3 44273073 44273369 -173763789 + AluSg SINE Alu 1 300 -10 1924 268 59 46 chr3 44273369 44274976 -173762182 - L1 LINE L1 -3895 3670 2179 * 8646 196 52 6 chr3 44274974 44276592 -173760566 + L1MA2 LINE L1 472 2163 -5402 * 10138 187 13 10 chr3 44276590 44278663 -173758495 + L1MA2 LINE L1 4027 6106 -1459 7393 124 4 1 chr3 44278683 44279979 -173757179 + L1MA2 LINE L1 6424 7723 0 1720 287 31 20 chr3 44280011 44280558 -173756600 - L1 LINE L1 -5720 1776 1224 2721 232 57 52 chr3 44280610 44281591 -173755567 - L1M4 LINE L1 -946 5200 4215 193 366 27 18 chr3 44281618 44281730 -173755428 - L2 LINE L2 -2072 1242 1130 257 0 30 0 chr3 44282575 44282608 -173754550 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 297 290 318 0 chr3 44282911 44283087 -173754071 - MIR SINE MIR -1 261 30 1148 94 6 11 chr3 44283283 44283463 -173753695 - L1PA8 LINE L1 0 6172 5994 5741 68 9 0 chr3 44283463 44284453 -173752705 + L1PA8 LINE L1 4992 5989 -183 420 328 78 10 chr3 44285061 44285253 -173751905 + MIR SINE MIR 1 205 -57 516 263 64 95 chr3 44285641 44286093 -173751065 - L1ME3A LINE L1 -1 6169 5732 694 291 94 40 chr3 44286094 44286668 -173750490 + L1M4 LINE L1 2853 3457 -2689 23 54 0 0 chr3 44287334 44287371 -173749787 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr3 44288035 44288055 -173749103 + (GAA)n Simple_repeat Simple_repeat 2 21 0 557 267 17 40 chr3 44288833 44289009 -173748149 - MLT1H1 LTR MaLR -24 531 360 198 103 0 0 chr3 44289030 44289059 -173748099 + (TC)n Simple_repeat Simple_repeat 2 30 0 705 265 69 87 chr3 44289521 44289635 -173747523 + HAL1 LINE L1 988 1103 -1404 6861 35 2 7 chr3 44289635 44290470 -173746688 + L1PA5 LINE L1 5323 6153 -1 705 265 69 87 chr3 44290470 44290792 -173746366 + HAL1 LINE L1 1103 1416 -1091 333 262 7 55 chr3 44290824 44290969 -173746189 + HAL1 LINE L1 1509 1646 -861 213 283 0 0 chr3 44292129 44292182 -173744976 + (TG)n Simple_repeat Simple_repeat 1 53 0 1254 281 99 22 chr3 44292475 44292980 -173744178 - MLT1H LTR MaLR 0 549 6 291 306 0 9 chr3 44293221 44293329 -173743829 - MIR SINE MIR -57 205 99 212 343 0 0 chr3 44294193 44294260 -173742898 - L2 LINE L2 -219 3053 2987 293 250 16 0 chr3 44294854 44294918 -173742240 - MIR SINE MIR -62 146 82 285 309 154 0 chr3 44295754 44295877 -173741281 - MIR3 SINE MIR -22 186 45 180 0 0 0 chr3 44296266 44296286 -173740872 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1698 58 0 98 chr3 44296337 44296611 -173740547 - L1PA8 LINE L1 -2 6170 5924 227 219 0 78 chr3 44297009 44297073 -173740085 + MIR SINE MIR 110 168 -94 651 274 159 77 chr3 44297184 44297625 -173739533 - MLT1H LTR MaLR 0 549 73 279 0 0 0 chr3 44298898 44298929 -173738229 + (TG)n Simple_repeat Simple_repeat 2 32 0 283 269 19 19 chr3 44299030 44299134 -173738024 + MIR SINE MIR 158 261 -1 288 278 14 0 chr3 44299356 44299428 -173737730 + MIR SINE MIR 180 252 -10 764 163 126 42 chr3 44299618 44299808 -173737350 + L1PB3 LINE L1 5946 6151 -3 783 286 66 66 chr3 44299934 44300312 -173736846 + LTR16A LTR ERVL 64 441 -9 2136 107 0 3 chr3 44300603 44300893 -173736265 - AluSx SINE Alu -19 293 5 26 30 0 0 chr3 44301152 44301185 -173735973 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr3 44301459 44301487 -173735671 + AT_rich Low_complexity Low_complexity 1 28 0 197 132 26 0 chr3 44301712 44301750 -173735408 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 359 273 131 33 chr3 44301752 44302141 -173735017 - L1M4 LINE L1 -3127 3019 2593 340 328 60 22 chr3 44302349 44302532 -173734626 - MER117 DNA MER1_type -6 191 2 591 259 170 25 chr3 44302568 44302850 -173734308 + HAL1b LINE L1 451 773 -575 320 308 0 25 chr3 44303476 44303596 -173733562 + HAL1b LINE L1 839 955 -393 224 268 207 0 chr3 44304021 44304103 -173733055 - L2 LINE L2 -18 3295 3197 38 22 0 0 chr3 44304620 44304665 -173732493 + AT_rich Low_complexity Low_complexity 1 45 0 6207 51 0 0 chr3 44305513 44306298 -173730860 - L1PA4 LINE L1 -4141 2005 1221 27178 38 1 1 chr3 44306298 44310434 -173726724 + L1PA4 LINE L1 2021 6155 0 248 260 83 10 chr3 44310545 44310641 -173726517 + MST-int LTR MaLR 1327 1429 -222 1928 138 0 34 chr3 44310825 44311145 -173726013 + AluSc SINE Alu 1 309 0 745 232 89 12 chr3 44311263 44311509 -173725649 - Zaphod DNA AcHobo -172 3859 3595 * 1610 260 118 48 chr3 44311506 44311827 -173725331 - Zaphod DNA AcHobo -3040 991 694 767 167 58 0 chr3 44311827 44312001 -173725157 + MER53 DNA DNA 4 187 -2 1610 260 118 48 chr3 44312001 44312591 -173724567 - Zaphod DNA AcHobo -3337 694 16 321 227 11 23 chr3 44312658 44312746 -173724412 + MLT1J2 LTR MaLR 72 158 -292 22 35 0 0 chr3 44313091 44313120 -173724038 + AT_rich Low_complexity Low_complexity 1 29 0 1438 272 70 33 chr3 44313258 44313714 -173723444 - MLT1D LTR MaLR -6 499 27 245 197 26 53 chr3 44314221 44314297 -173722861 - L1ME LINE L1 -364 5757 5684 461 254 44 44 chr3 44314371 44314619 -173722539 + L1MEc LINE L1 1956 2203 -4193 1076 171 0 5 chr3 44314788 44314975 -173722183 + L1PA13 LINE L1 4788 4973 -1173 2014 173 52 32 chr3 44314977 44315507 -173721651 + MLT2A2 LTR ERVL 1 550 -4 5214 117 61 3 chr3 44315507 44315565 -173721593 + L1PA13 LINE L1 4968 5021 -1142 2246 79 0 26 chr3 44315565 44315870 -173721288 + AluY SINE Alu 1 297 -14 5214 117 61 3 chr3 44315870 44316962 -173720196 + L1PA13 LINE L1 5021 6161 -2 1113 243 66 6 chr3 44316965 44317315 -173719843 + L1MEc LINE L1 2465 2835 -3380 21 0 0 0 chr3 44318135 44318156 -173719002 + AT_rich Low_complexity Low_complexity 1 21 0 5521 134 33 3 chr3 44318158 44319167 -173717991 - L1PA15 LINE L1 -2 6163 5124 302 303 96 23 chr3 44319302 44319492 -173717666 + L1ME2 LINE L1 5708 5910 -256 1629 213 20 17 chr3 44320098 44320450 -173716708 - MLT1A1 LTR MaLR 0 365 13 276 30 0 0 chr3 44321063 44321096 -173716062 + (CA)n Simple_repeat Simple_repeat 1 33 0 2539 147 33 9 chr3 44321096 44321546 -173715612 - L1PB3 LINE L1 -9 6145 5685 2452 62 3 3 chr3 44321665 44321974 -173715184 - AluY SINE Alu 0 311 3 33 43 0 0 chr3 44322881 44322928 -173714230 + AT_rich Low_complexity Low_complexity 1 47 0 1651 275 59 32 chr3 44323744 44324493 -173712665 + L1ME LINE L1 140 908 -5162 202 137 55 14 chr3 44324636 44324709 -173712449 + (TA)n Simple_repeat Simple_repeat 2 77 0 298 192 64 29 chr3 44324749 44324921 -173712237 + (TA)n Simple_repeat Simple_repeat 1 178 0 338 178 66 26 chr3 44325016 44325168 -173711990 + (TA)n Simple_repeat Simple_repeat 2 159 0 1229 205 13 8 chr3 44325344 44325578 -173711580 + AluJb SINE Alu 1 235 -77 252 180 166 65 chr3 44326416 44326555 -173710603 + L1ME LINE L1 877 1029 -5041 375 106 0 0 chr3 44326738 44326804 -173710354 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 225 0 0 0 chr3 44326821 44326846 -173710312 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1786 117 36 0 chr3 44326846 44327093 -173710065 - AluSx SINE Alu -53 259 4 657 279 102 95 chr3 44327201 44327251 -173709907 + L1ME LINE L1 2224 2272 -3808 1993 149 21 6 chr3 44327251 44327580 -173709578 + MER1B DNA MER1_type 4 337 0 657 279 102 95 chr3 44327580 44328303 -173708855 + L1ME LINE L1 2272 3006 -3074 420 209 157 52 chr3 44328303 44328418 -173708740 + FLAM_A SINE Alu 1 127 -6 657 279 102 95 chr3 44328418 44328530 -173708628 + L1ME LINE L1 3006 3116 -2964 292 309 43 33 chr3 44328668 44328969 -173708189 + L1M4 LINE L1 4477 4780 -1366 285 255 104 28 chr3 44329021 44329127 -173708031 - MIR3 SINE MIR -82 126 13 621 298 33 90 chr3 44329169 44329578 -173707580 - MLT1I LTR MaLR -2 407 25 378 0 0 0 chr3 44330891 44330933 -173706225 + (CA)n Simple_repeat Simple_repeat 2 43 0 334 283 119 92 chr3 44335035 44335485 -173701673 - L1M2 LINE L1 -5473 1376 727 215 273 0 0 chr3 44335799 44335854 -173701304 + (CGGA)n Simple_repeat Simple_repeat 1 55 0 199 155 14 28 chr3 44336068 44336139 -173701019 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr3 44340899 44340920 -173696238 + AT_rich Low_complexity Low_complexity 1 21 0 200 244 61 37 chr3 44343534 44343616 -173693542 + MIR SINE MIR 48 131 -131 421 271 65 0 chr3 44343640 44343747 -173693411 + MIR SINE MIR 59 172 -90 210 289 19 0 chr3 44344941 44344993 -173692165 + L2 LINE L2 3215 3267 -5 232 307 27 13 chr3 44347194 44347269 -173689889 + MIR3 SINE MIR 130 205 -3 343 236 163 24 chr3 44347406 44347529 -173689629 + MIR SINE MIR 8 147 -115 184 274 170 28 chr3 44349480 44349586 -173687572 + MIR SINE MIR 48 168 -94 26 30 0 0 chr3 44350747 44350780 -173686378 + AT_rich Low_complexity Low_complexity 1 33 0 180 200 0 0 chr3 44351078 44351128 -173686030 + (TA)n Simple_repeat Simple_repeat 2 51 0 658 210 138 6 chr3 44351644 44351811 -173685347 - MER5A DNA MER1_type 0 189 1 26 30 0 0 chr3 44351938 44351971 -173685187 + AT_rich Low_complexity Low_complexity 1 33 0 1591 264 74 4 chr3 44352186 44352684 -173684474 + L1MD2 LINE L1 5655 6162 0 180 277 161 66 chr3 44353055 44353192 -173683966 - L3 LINE CR1 -48 1529 1380 765 283 72 9 chr3 44353328 44353551 -173683607 - MIR SINE MIR -2 260 24 264 191 15 15 chr3 44355019 44355087 -173682071 + MER112 DNA MER1_type 13 80 -180 28 61 0 0 chr3 44355186 44355235 -173681923 + AT_rich Low_complexity Low_complexity 1 49 0 274 356 40 0 chr3 44355310 44355411 -173681747 - L2 LINE L2 -15 3257 3153 389 276 64 26 chr3 44357599 44357755 -173679403 + MIR SINE MIR 68 229 -33 1013 253 34 48 chr3 44358257 44358609 -173678549 - LTR16A LTR ERVL 0 450 104 1427 177 166 33 chr3 44358615 44358994 -173678164 + L1MA4A LINE L1 5855 6279 -24 1840 119 62 12 chr3 44360016 44360336 -173676822 - L1MA6 LINE L1 0 6300 5965 207 297 109 20 chr3 44362873 44362974 -173674184 + MIR SINE MIR 33 142 -120 1319 62 5 5 chr3 44363695 44363905 -173673253 + (GAA)n Simple_repeat Simple_repeat 1 210 0 28 0 0 0 chr3 44364073 44364101 -173673057 + AT_rich Low_complexity Low_complexity 1 28 0 330 87 0 0 chr3 44364973 44365019 -173672139 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 435 244 102 31 chr3 44368419 44368546 -173668612 - L2 LINE L2 0 3313 3178 372 22 0 0 chr3 44371644 44371689 -173665469 + (ATG)n Simple_repeat Simple_repeat 2 46 0 200 259 37 0 chr3 44371954 44372008 -173665150 + L2 LINE L2 3257 3312 -1 234 62 0 0 chr3 44373125 44373157 -173664001 + (CA)n Simple_repeat Simple_repeat 2 33 0 305 184 10 31 chr3 44376553 44376651 -173660507 + CT-rich Low_complexity Low_complexity 5 100 0 192 77 0 0 chr3 44378604 44378630 -173658528 + (TC)n Simple_repeat Simple_repeat 1 26 0 213 94 0 0 chr3 44378656 44378688 -173658470 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr3 44379099 44379121 -173658037 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chr3 44379532 44379567 -173657591 + (TTTCC)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr3 44380288 44380320 -173656838 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 44381700 44381721 -173655437 + AT_rich Low_complexity Low_complexity 1 21 0 43 20 0 0 chr3 44382872 44382922 -173654236 + AT_rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr3 44384433 44384453 -173652705 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 214 114 23 23 chr3 44385745 44385789 -173651369 + (AAATG)n Simple_repeat Simple_repeat 1 44 0 468 286 60 30 chr3 44387282 44387450 -173649708 + MIR3 SINE MIR 15 187 -21 267 322 132 26 chr3 44387893 44388045 -173649113 + MIR3 SINE MIR 16 183 -25 435 205 195 70 chr3 44388582 44388767 -173648391 - MER3 DNA MER1_type 0 209 2 200 271 52 21 chr3 44390308 44390404 -173646754 - MIR SINE MIR -62 200 102 320 111 49 0 chr3 44390740 44390821 -173646337 + (TA)n Simple_repeat Simple_repeat 1 85 0 22 56 0 0 chr3 44390824 44390860 -173646298 + AT_rich Low_complexity Low_complexity 1 36 0 339 324 92 42 chr3 44391620 44391858 -173645300 - MIR SINE MIR -11 251 2 202 267 0 17 chr3 44394936 44394996 -173642162 + (TG)n Simple_repeat Simple_repeat 2 60 0 371 242 76 86 chr3 44395918 44396116 -173641042 - MIR SINE MIR -8 254 59 250 73 0 0 chr3 44396684 44396725 -173640433 - L1PA6 LINE L1 0 6154 6114 * 1120 93 0 0 chr3 44396716 44396867 -173640291 + L1PA6 LINE L1 5981 6131 -23 336 287 28 46 chr3 44400625 44400733 -173636425 - L2 LINE L2 -18 3295 3190 198 71 0 0 chr3 44406364 44406392 -173630766 + (TC)n Simple_repeat Simple_repeat 1 28 0 405 0 0 0 chr3 44406394 44406439 -173630719 + (CA)n Simple_repeat Simple_repeat 2 46 0 2065 213 45 62 chr3 44407338 44407873 -173629285 - MLT1F LTR MaLR 0 542 17 513 110 0 0 chr3 44408361 44408452 -173628706 + (TG)n Simple_repeat Simple_repeat 1 91 0 24 67 0 0 chr3 44409071 44409116 -173628042 + AT_rich Low_complexity Low_complexity 1 45 0 1761 161 21 0 chr3 44409251 44409537 -173627621 - AluJb SINE Alu -12 300 9 208 311 0 33 chr3 44411386 44411476 -173625682 + (TA)n Simple_repeat Simple_repeat 2 88 0 238 211 0 19 chr3 44412892 44412944 -173624214 + CT-rich Low_complexity Low_complexity 4 54 0 213 288 15 30 chr3 44413750 44413816 -173623342 + L2 LINE L2 3184 3248 -65 347 219 17 76 chr3 44417840 44417959 -173619199 + MIR SINE MIR 67 178 -84 644 315 0 6 chr3 44418191 44418372 -173618786 + MIR SINE MIR 83 262 0 957 191 16 6 chr3 44420285 44420468 -173616690 - MER5A DNA MER1_type -4 185 1 1832 239 58 8 chr3 44420801 44421286 -173615872 - MER67D LTR ERV1 0 514 6 388 301 49 8 chr3 44421300 44421423 -173615735 - MIR3 SINE MIR -45 163 36 218 231 0 55 chr3 44421501 44421592 -173615566 + T-rich Low_complexity Low_complexity 2 87 0 358 325 197 0 chr3 44421810 44422013 -173615145 + MIR SINE MIR 16 258 -4 364 279 90 58 chr3 44423101 44423279 -173613879 + MIR SINE MIR 2 188 -20 333 0 0 0 chr3 44424004 44424041 -173613117 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2364 83 7 3 chr3 44424067 44424369 -173612789 - AluSg SINE Alu -7 303 1 915 224 9 36 chr3 44426164 44426383 -173610775 + MER20 DNA MER1_type 7 219 0 199 214 29 19 chr3 44427426 44427529 -173609629 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 198 208 0 0 chr3 44429923 44429971 -173607187 + (TG)n Simple_repeat Simple_repeat 1 48 0 251 328 33 8 chr3 44430689 44430811 -173606347 - L1ME3 LINE L1 -35 6127 6003 309 252 13 113 chr3 44430905 44430971 -173606187 - HAL1 LINE L1 -1556 951 907 1750 169 28 3 chr3 44430971 44431261 -173605897 - AluJo SINE Alu -12 300 4 309 252 13 113 chr3 44431261 44431345 -173605813 - HAL1 LINE L1 -1600 907 816 185 351 0 0 chr3 44431848 44431905 -173605253 + MIR SINE MIR 61 117 -91 * 438 343 74 9 chr3 44431902 44432118 -173605040 + MIR SINE MIR 7 236 -26 236 240 27 27 chr3 44432218 44432293 -173604865 + MIR SINE MIR 117 191 -71 21 0 0 0 chr3 44435026 44435047 -173602111 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr3 44436639 44436662 -173600496 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1504 223 0 14 chr3 44436667 44436959 -173600199 + AluJb SINE Alu 1 288 -24 332 218 113 57 chr3 44439173 44439297 -173597861 - MLT1H LTR MaLR -60 535 405 584 282 101 18 chr3 44439327 44439604 -173597554 - MLT1H LTR MaLR -249 300 1 2207 96 0 32 chr3 44442920 44443233 -173593925 + AluSx SINE Alu 1 303 -9 268 208 0 15 chr3 44443484 44443551 -173593607 + AluSc SINE Alu 131 175 -124 728 178 16 0 chr3 44443662 44443791 -173593367 + AluJb SINE Alu 182 308 -302 929 93 11 33 chr3 44443791 44443863 -173593295 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 929 93 11 33 chr3 44443863 44444046 -173593112 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 728 178 16 0 chr3 44444046 44444089 -173593069 + AluJb SINE Alu 308 610 0 288 351 79 12 chr3 44444698 44444863 -173592295 - MIR SINE MIR -74 188 13 3140 238 20 45 chr3 44445364 44446517 -173590641 - L1M4 LINE L1 -2475 3671 2548 384 223 254 0 chr3 44448447 44448577 -173588581 - MER5A DNA MER1_type 0 189 27 306 0 0 0 chr3 44448893 44448927 -173588231 + (TG)n Simple_repeat Simple_repeat 2 35 0 244 220 0 0 chr3 44449437 44449487 -173587671 - L1MCb LINE L1 -5418 627 578 2846 187 16 82 chr3 44449512 44450223 -173586935 - MER4D LTR ERV1 -2 901 238 1510 186 28 14 chr3 44450286 44450576 -173586582 - MER49 LTR ERV1 -629 294 1 3311 141 2 42 chr3 44450696 44451243 -173585915 + MER61E LTR ERV1 1 525 -44 895 227 25 5 chr3 44451248 44451446 -173585712 - L1MCb LINE L1 -5847 717 516 1023 187 26 130 chr3 44451692 44452039 -173585119 - MER67D LTR ERV1 -203 311 1 234 162 0 0 chr3 44452039 44452076 -173585082 + L2 LINE L2 2593 2629 -685 27 0 0 0 chr3 44452127 44452154 -173585004 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 44452257 44452285 -173584873 + AT_rich Low_complexity Low_complexity 1 28 0 669 298 17 57 chr3 44452318 44452671 -173584487 - MLT1H LTR MaLR -187 362 24 314 266 95 44 chr3 44452695 44452853 -173584305 + L2 LINE L2 3148 3313 0 563 182 26 47 chr3 44453685 44453877 -173583281 - MER53 DNA DNA -1 188 1 2321 106 0 0 chr3 44453990 44454293 -173582865 + AluY SINE Alu 1 303 -8 220 284 45 0 chr3 44454795 44454862 -173582296 + MIR SINE MIR 59 128 -80 818 285 183 43 chr3 44454874 44455811 -173581347 - L2 LINE L2 -8 3305 2219 1917 141 0 23 chr3 44456156 44456460 -173580698 - AluSx SINE Alu -15 297 1 1393 157 113 7 chr3 44456513 44456787 -173580371 + MER44D DNA MER2_type 1 573 -36 589 272 56 21 chr3 44457703 44458014 -173579144 + MLT1H1 LTR MaLR 8 373 -222 29 47 0 0 chr3 44458459 44458502 -173578656 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr3 44458596 44458619 -173578539 + AT_rich Low_complexity Low_complexity 1 23 0 352 303 128 5 chr3 44460067 44460262 -173576896 + L1ME3A LINE L1 3516 3734 -2412 1418 256 77 90 chr3 44460361 44461117 -173576041 + L1ME3A LINE L1 4487 5251 -919 360 64 0 0 chr3 44461117 44461164 -173575994 + (CA)n Simple_repeat Simple_repeat 2 48 0 1418 256 77 90 chr3 44461164 44462102 -173575056 + L1ME3A LINE L1 5251 6165 -5 320 333 27 4 chr3 44462140 44462365 -173574793 + L1ME3 LINE L1 4617 4846 -1300 1095 298 74 9 chr3 44462498 44463173 -173573985 + L1ME3 LINE L1 5254 5972 -190 348 143 0 0 chr3 44463206 44463269 -173573889 + L1M LINE L1 5254 5316 -988 382 339 35 32 chr3 44463287 44463656 -173573502 + L1PA12 LINE L1 2 371 -7210 2211 212 44 30 chr3 44464704 44465577 -173571581 + L1PA12 LINE L1 2328 3266 -4318 28840 49 48 2 chr3 44465594 44469273 -173567885 + L1P LINE L1 9 3857 -2289 2464 107 10 0 chr3 44469269 44469652 -173567506 - L1P LINE L1 -743 5403 5017 * 3509 232 33 4 chr3 44469640 44470549 -173566609 + L1PA12 LINE L1 3766 4700 -2884 3040 163 26 66 chr3 44470565 44470881 -173566277 + L1MA4 LINE L1 5474 5801 -499 249 57 0 0 chr3 44470881 44470916 -173566242 + (TA)n Simple_repeat Simple_repeat 2 36 0 3040 163 26 66 chr3 44470916 44471294 -173565864 + L1MA4 LINE L1 5801 6140 -160 1222 269 87 17 chr3 44471427 44472022 -173565136 + HAL1b LINE L1 696 1332 -16 390 252 203 0 chr3 44472735 44472858 -173564300 - MER5A DNA MER1_type -6 183 36 239 250 62 25 chr3 44472929 44473009 -173564149 + L2 LINE L2 3188 3270 -2 180 294 110 28 chr3 44474555 44474664 -173562494 + L2 LINE L2 3196 3313 0 1681 158 91 32 chr3 44474869 44475225 -173561933 - THE1C LTR MaLR 0 375 2 1079 265 22 63 chr3 44475962 44476374 -173560784 + L1MCb LINE L1 77 471 -5574 234 295 67 27 chr3 44476868 44477092 -173560066 - HAL1b LINE L1 -25 1323 1091 205 309 0 0 chr3 44477375 44477430 -173559728 + (CA)n Simple_repeat Simple_repeat 2 56 0 485 312 130 14 chr3 44477465 44477811 -173559347 + HAL1 LINE L1 1475 1860 -647 328 313 124 62 chr3 44477841 44478259 -173558899 + HAL1 LINE L1 2060 2503 -4 598 288 63 62 chr3 44478261 44478862 -173558296 - HAL1b LINE L1 -265 1083 482 4830 83 74 109 chr3 44479475 44480331 -173556827 - LTR12 LTR ERV1 0 826 1 408 339 39 17 chr3 44481601 44481834 -173555324 - L1ME LINE L1 -479 5642 5405 3095 132 18 14 chr3 44482362 44482863 -173554295 + L1PA16 LINE L1 5664 6166 0 2512 110 13 11 chr3 44483117 44483491 -173553667 - THE1C LTR MaLR 0 375 1 24 67 0 0 chr3 44483724 44483769 -173553389 + AT_rich Low_complexity Low_complexity 1 45 0 2719 251 75 29 chr3 44484761 44485932 -173551226 - L1ME LINE L1 -907 5239 4015 1201 143 46 0 chr3 44485944 44486160 -173550998 - Tigger7 DNA MER2_type -1 2490 2265 287 204 0 0 chr3 44486157 44486206 -173550952 - Tigger7 DNA MER2_type -684 49 1 * 2722 267 73 16 chr3 44486245 44487446 -173549712 - L1ME LINE L1 -2473 3673 2404 1704 204 22 113 chr3 44487456 44488039 -173549119 - L1MA9 LINE L1 -271 6041 5512 1623 141 145 7 chr3 44488044 44488348 -173548810 + THE1C LTR MaLR 1 346 -29 198 0 0 0 chr3 44488348 44488370 -173548788 + (TTA)n Simple_repeat Simple_repeat 3 24 0 38516 63 42 0 chr3 44488370 44494241 -173542917 - L1PA5 LINE L1 -18 6136 11 256 167 0 0 chr3 44494247 44494289 -173542869 + THE1C LTR MaLR 387 428 0 1397 151 11 19 chr3 44494297 44494692 -173542466 - L1MA9 LINE L1 -746 5400 5107 27 49 0 0 chr3 44494723 44494764 -173542394 + AT_rich Low_complexity Low_complexity 1 41 0 192 40 0 0 chr3 44495375 44495400 -173541758 + (TG)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr3 44496556 44496576 -173540582 + (TTA)n Simple_repeat Simple_repeat 2 21 0 324 0 0 0 chr3 44498082 44498118 -173539040 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 1693 242 56 19 chr3 44498386 44498866 -173538292 - MLT1D LTR MaLR 0 505 8 246 288 0 0 chr3 44499041 44499107 -173538051 + MER116 DNA Mariner 1 66 -14 543 261 60 27 chr3 44499116 44499300 -173537858 - MIR SINE MIR -57 205 16 223 309 0 0 chr3 44499504 44499588 -173537570 + A-rich Low_complexity Low_complexity 1 84 0 221 216 0 0 chr3 44499772 44499809 -173537349 + polypurine Low_complexity Low_complexity 2 38 0 235 293 49 0 chr3 44500035 44500117 -173537041 + L1MC4 LINE L1 6618 6703 -1339 2255 115 0 0 chr3 44500144 44500439 -173536719 + AluSg SINE Alu 1 295 -15 956 241 59 96 chr3 44501280 44501556 -173535602 - MLT2C2 LTR ERVL -2 462 210 2453 30 40 16 chr3 44501556 44501860 -173535298 + AluY SINE Alu 1 311 0 956 241 59 96 chr3 44501860 44502061 -173535097 - MLT2C2 LTR ERVL -254 210 3 24 32 0 0 chr3 44502676 44502707 -173534451 + AT_rich Low_complexity Low_complexity 1 31 0 238 269 97 97 chr3 44504476 44504621 -173532537 - MIR SINE MIR -69 193 49 241 233 224 43 chr3 44505530 44505646 -173531512 - MIR SINE MIR -17 245 109 654 251 73 11 chr3 44505751 44505942 -173531216 - MIR SINE MIR -58 204 2 21 0 0 0 chr3 44505958 44505979 -173531179 + AT_rich Low_complexity Low_complexity 1 21 0 595 163 10 0 chr3 44505991 44506089 -173531069 + AluJ/FLAM SINE Alu 1 99 -213 807 193 18 0 chr3 44506259 44506425 -173530733 + FRAM SINE Alu 8 176 0 5172 186 32 44 chr3 44506990 44508027 -173529131 - L1MC1 LINE L1 -7 6606 5557 272 173 77 0 chr3 44508027 44508079 -173529079 + MADE1 DNA Mariner 1 56 -24 5172 186 32 44 chr3 44508079 44508331 -173528827 - L1MC1 LINE L1 -1056 5557 5303 8152 165 84 56 chr3 44508332 44508378 -173528780 - L1MC1 LINE L1 -4444 1982 1939 2182 114 3 10 chr3 44508378 44508684 -173528474 + AluSx SINE Alu 1 304 -8 8152 165 84 56 chr3 44508684 44510549 -173526609 - L1MC1 LINE L1 -4487 1939 17 1249 241 40 64 chr3 44511972 44512506 -173524652 - L1M4c LINE L1 -4459 1924 1188 423 345 75 31 chr3 44513318 44513640 -173523518 + LTR16C LTR ERVL 156 491 0 32 26 0 0 chr3 44514677 44514716 -173522442 + AT_rich Low_complexity Low_complexity 1 39 0 858 239 19 46 chr3 44514784 44515043 -173522115 - L1ME3 LINE L1 -1 6161 5910 252 307 16 8 chr3 44515290 44515417 -173521741 + L1MEd LINE L1 27 154 -5965 269 85 65 35 chr3 44515425 44515490 -173521668 + AluSg/x SINE Alu 120 178 -124 5567 180 9 39 chr3 44515490 44517602 -173519556 + L1P3 LINE L1 344 2449 -4012 6269 90 8 1 chr3 44517604 44518760 -173518398 + L1PA8A LINE L1 4976 6129 -2 578 318 71 21 chr3 44518820 44519100 -173518058 + L1MEd LINE L1 396 689 -5430 186 71 0 0 chr3 44519140 44519168 -173517990 + (TA)n Simple_repeat Simple_repeat 1 28 0 260 292 35 74 chr3 44519405 44519662 -173517496 + L1MEd LINE L1 1011 1257 -4862 32 0 0 0 chr3 44519702 44519734 -173517424 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr3 44520222 44520261 -173516897 + AT_rich Low_complexity Low_complexity 1 39 0 1617 279 88 8 chr3 44520305 44520807 -173516351 - MLT1E LTR MaLR -51 542 1 23 33 0 0 chr3 44520807 44520837 -173516321 + AT_rich Low_complexity Low_complexity 1 30 0 206 152 0 22 chr3 44520864 44520910 -173516248 + T-rich Low_complexity Low_complexity 5 49 0 303 319 111 84 chr3 44522436 44522888 -173514270 + L2 LINE L2 2838 3301 -12 216 0 0 0 chr3 44523442 44523466 -173513692 + (T)n Simple_repeat Simple_repeat 1 24 0 1782 188 3 6 chr3 44524140 44524497 -173512661 - L1MA6 LINE L1 -4 6296 5941 312 325 110 32 chr3 44525038 44525284 -173511874 + L1M4 LINE L1 4301 4565 -1581 198 118 0 0 chr3 44525376 44525410 -173511748 + (TG)n Simple_repeat Simple_repeat 1 34 0 63 26 0 0 chr3 44525978 44526055 -173511103 + AT_rich Low_complexity Low_complexity 1 77 0 28 0 0 0 chr3 44526241 44526269 -173510889 + AT_rich Low_complexity Low_complexity 1 28 0 323 260 182 26 chr3 44526323 44526562 -173510596 + L1MC4 LINE L1 7652 7913 -48 7440 32 3 0 chr3 44526675 44527731 -173509427 - L1PA4 LINE L1 0 6155 5099 361 343 16 44 chr3 44527735 44527986 -173509172 + L2 LINE L2 1932 2175 -1139 1888 205 93 39 chr3 44528458 44528921 -173508237 - MLT1D LTR MaLR 0 505 18 3762 156 36 3 chr3 44529035 44529710 -173507448 - L1MC1 LINE L1 -1 6332 5636 335 311 42 48 chr3 44529812 44529979 -173507179 + L2 LINE L2 2636 2801 -513 447 320 112 46 chr3 44530082 44530538 -173506620 - LTR33 LTR ERVL -28 493 8 368 280 70 28 chr3 44530946 44531089 -173506069 - L1ME LINE L1 -465 5656 5508 1430 191 34 4 chr3 44533166 44533433 -173503725 - MER1B DNA MER1_type -64 275 1 317 231 10 67 chr3 44533433 44533537 -173503621 + MER117 DNA MER1_type 58 155 -42 248 265 0 19 chr3 44533632 44533703 -173503455 - MIR SINE MIR -119 89 20 230 278 0 0 chr3 44535716 44535804 -173501354 + (TG)n Simple_repeat Simple_repeat 1 88 0 225 312 8 16 chr3 44535717 44535842 -173501316 + (TA)n Simple_repeat Simple_repeat 1 124 0 * 12974 144 56 9 chr3 44535881 44538190 -173498968 - Tigger1 DNA MER2_type 0 2418 1 26 50 0 0 chr3 44538278 44538318 -173498840 + AT_rich Low_complexity Low_complexity 1 40 0 2749 157 79 63 chr3 44538333 44539170 -173497988 + L1MDa LINE L1 1807 2721 -4000 * 8517 186 106 43 chr3 44539168 44541469 -173495689 + L1MC1 LINE L1 20 2465 -3961 5716 208 31 18 chr3 44541613 44543696 -173493462 + L1MC1 LINE L1 4508 6613 0 21 0 0 0 chr3 44543713 44543734 -173493424 + AT_rich Low_complexity Low_complexity 1 21 0 889 263 98 103 chr3 44543845 44545119 -173492039 + HAL1 LINE L1 794 2059 -448 1825 121 3 60 chr3 44545119 44545434 -173491724 + AluSc SINE Alu 2 298 -11 889 263 98 103 chr3 44545434 44545881 -173491277 + HAL1 LINE L1 2059 2507 0 647 184 0 9 chr3 44547366 44547475 -173489683 + FLAM_A SINE Alu 11 118 -24 2220 102 0 0 chr3 44548597 44548890 -173488268 + AluSg SINE Alu 6 298 -12 213 338 50 29 chr3 44548907 44549046 -173488112 + MIR SINE MIR 118 259 -3 22 35 0 0 chr3 44550993 44551022 -173486136 + AT_rich Low_complexity Low_complexity 1 29 0 203 0 37 0 chr3 44552290 44552317 -173484841 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1406 172 69 48 chr3 44552659 44552950 -173484208 - AluJo SINE Alu -13 299 3 595 245 75 0 chr3 44553469 44553669 -173483489 + L1M4 LINE L1 4187 4401 -1745 228 232 18 0 chr3 44554449 44554505 -173482653 + (TG)n Simple_repeat Simple_repeat 1 57 0 215 255 0 0 chr3 44555214 44555265 -173481893 + T-rich Low_complexity Low_complexity 1 51 0 285 29 0 0 chr3 44555266 44555300 -173481858 + (TG)n Simple_repeat Simple_repeat 1 34 0 527 270 0 0 chr3 44555301 44555416 -173481742 - MLT1B LTR MaLR -49 341 227 230 216 40 54 chr3 44557445 44557519 -173479639 - L2 LINE L2 0 3313 3241 338 0 24 0 chr3 44557675 44557717 -173479441 + (TC)n Simple_repeat Simple_repeat 1 43 0 207 0 0 0 chr3 44557716 44557739 -173479419 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 42410 37 23 3 chr3 44557839 44563745 -173473413 - L1PA2 LINE L1 -133 6022 1 2045 185 32 46 chr3 44563746 44564243 -173472915 - L1MC3 LINE L1 -202 7583 7094 * 4168 254 27 19 chr3 44564242 44565625 -173471533 - L1M4 LINE L1 -1293 4853 3460 589 214 83 128 chr3 44565633 44566031 -173471127 + MLT1B LTR MaLR 11 390 0 714 242 35 23 chr3 44566060 44566407 -173470751 - L1M4 LINE L1 -2712 3434 3084 737 265 22 13 chr3 44566438 44566668 -173470490 - L1MCb LINE L1 -5810 235 4 3056 59 15 12 chr3 44566767 44567175 -173469983 + L1PA7 LINE L1 5744 6152 -2 281 325 66 58 chr3 44567264 44567722 -173469436 - L2 LINE L2 -122 3191 2728 218 333 12 0 chr3 44568008 44568092 -173469066 + CT-rich Low_complexity Low_complexity 2 86 0 252 314 138 44 chr3 44568216 44568375 -173468783 + L2 LINE L2 2869 3042 -230 202 217 22 0 chr3 44568984 44569030 -173468128 + (TG)n Simple_repeat Simple_repeat 1 47 0 456 19 0 0 chr3 44569134 44569187 -173467971 + (TC)n Simple_repeat Simple_repeat 1 53 0 204 40 0 0 chr3 44569562 44569587 -173467571 + (TAG)n Simple_repeat Simple_repeat 2 26 0 399 307 49 25 chr3 44569598 44569761 -173467397 - MIR SINE MIR -12 250 84 206 73 0 49 chr3 44569865 44569906 -173467252 + (TA)n Simple_repeat Simple_repeat 2 40 0 269 277 45 27 chr3 44570667 44570779 -173466379 + MIR SINE MIR 120 233 -29 280 360 142 20 chr3 44570931 44571184 -173465974 + L2 LINE L2 2988 3271 -1 416 255 51 112 chr3 44571768 44572062 -173465096 - HAL1 LINE L1 -2231 276 1 821 266 36 58 chr3 44572544 44572968 -173464190 - LTR38B LTR ERV1 -26 584 149 195 42 0 0 chr3 44573352 44573376 -173463782 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 426 85 0 0 chr3 44574105 44574164 -173462994 + (TCC)n Simple_repeat Simple_repeat 2 60 0 13781 146 37 6 chr3 44574881 44577203 -173459955 - Tigger1 DNA MER2_type -1 2417 24 270 56 0 0 chr3 44577238 44577274 -173459884 + (TG)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr3 44577812 44577843 -173459315 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 618 49 0 0 chr3 44577842 44577924 -173459234 + (GA)n Simple_repeat Simple_repeat 1 82 0 190 194 0 0 chr3 44579134 44579170 -173457988 - L2 LINE L2 -94 3219 3184 258 355 77 0 chr3 44579358 44579513 -173457645 - L2 LINE L2 -929 2385 2219 1493 179 97 45 chr3 44579847 44579896 -173457262 + LTR52 LTR ERVL 1 46 -375 339 0 0 0 chr3 44579896 44579938 -173457220 - L1PA3 LINE L1 -3 6152 6111 1493 179 97 45 chr3 44579938 44580268 -173456890 + LTR52 LTR ERVL 46 400 -21 462 326 77 29 chr3 44581605 44581918 -173455240 - L2 LINE L2 -548 2766 2439 246 62 0 0 chr3 44581948 44581980 -173455178 + (GA)n Simple_repeat Simple_repeat 2 33 0 447 321 66 10 chr3 44582007 44582203 -173454955 - MIR SINE MIR 0 262 56 328 286 0 0 chr3 44582780 44582850 -173454308 + MER91A DNA MER1_type 34 103 -93 263 307 50 20 chr3 44582898 44582999 -173454159 + MER91A DNA MER1_type 90 193 -3 576 215 31 110 chr3 44584459 44584650 -173452508 - MER58A DNA MER1_type -4 220 45 4200 194 57 36 chr3 44584835 44585208 -173451950 - L1MD2 LINE L1 -79 6280 5917 1720 200 13 25 chr3 44585208 44585603 -173451555 - MLT1B LTR MaLR 0 390 1 4200 194 57 36 chr3 44585603 44586516 -173450642 - L1MD2 LINE L1 -442 5917 4975 1325 281 65 49 chr3 44586544 44587981 -173449177 - L1ME LINE L1 -4147 2114 479 1980 157 0 0 chr3 44587981 44588275 -173448883 - AluSx SINE Alu -18 294 1 1325 281 65 49 chr3 44588275 44588442 -173448716 - L1ME LINE L1 -5782 479 316 317 354 32 6 chr3 44588510 44588668 -173448490 - L1ME LINE L1 -5668 310 149 286 240 10 31 chr3 44589103 44589199 -173447959 - L1ME LINE L1 -5929 141 48 203 264 23 11 chr3 44589505 44589592 -173447566 + CT-rich Low_complexity Low_complexity 3 90 0 3245 194 32 37 chr3 44590535 44591322 -173445836 + L1MB1 LINE L1 5386 6168 0 1253 272 83 41 chr3 44591332 44592188 -173444970 - L1M4 LINE L1 -3699 2683 1684 4702 109 27 0 chr3 44592188 44592892 -173444266 - L1PA11 LINE L1 0 6174 5452 1253 272 83 41 chr3 44592892 44593212 -173443946 - L1M4 LINE L1 -4698 1684 1379 2488 209 19 13 chr3 44593212 44593734 -173443424 - Tigger1 DNA MER2_type -1892 526 2 1921 231 117 45 chr3 44593734 44594374 -173442784 - L1MDb LINE L1 -4402 2138 1545 185 0 40 0 chr3 44594374 44594399 -173442759 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1921 231 117 45 chr3 44594399 44594926 -173442232 - L1MDb LINE L1 -4995 1545 917 246 105 0 0 chr3 44595070 44595108 -173442050 + (CTG)n Simple_repeat Simple_repeat 1 38 0 695 232 72 65 chr3 44595333 44595596 -173441562 - L1MDb LINE L1 -6260 280 16 978 305 68 65 chr3 44595628 44596762 -173440396 + L2 LINE L2 2186 3313 0 21 0 0 0 chr3 44597350 44597371 -173439787 + AT_rich Low_complexity Low_complexity 1 21 0 251 328 69 23 chr3 44598118 44598249 -173438909 + L2 LINE L2 3174 3310 -3 867 308 86 55 chr3 44599313 44600038 -173437120 + L1ME LINE L1 4623 5369 -777 983 42 0 0 chr3 44600403 44600521 -173436637 + L1PA3 LINE L1 6033 6150 -5 22 56 0 0 chr3 44601199 44601235 -173435923 + AT_rich Low_complexity Low_complexity 1 36 0 450 294 60 35 chr3 44601625 44601826 -173435332 + MIR SINE MIR 47 252 -10 2115 134 3 0 chr3 44602200 44602507 -173434651 - AluSx SINE Alu -4 308 1 2033 106 23 36 chr3 44603475 44604027 -173433131 + MER51A LTR ERV1 1 634 0 2269 108 0 3 chr3 44604523 44604828 -173432330 + AluSg SINE Alu 1 304 -6 1354 198 44 0 chr3 44605024 44605322 -173431836 + L1MB4 LINE L1 5869 6179 -1 2836 152 13 4 chr3 44607391 44607844 -173429314 + LTR32 LTR ERVL 15 471 0 352 226 86 0 chr3 44607844 44607937 -173429221 + L1ME3A LINE L1 6070 6170 0 312 314 36 52 chr3 44607965 44608176 -173428982 + L1ME LINE L1 5440 5641 -480 244 179 54 18 chr3 44608153 44608209 -173428949 + L1MA4A LINE L1 5624 5681 -653 * 234 81 0 0 chr3 44608944 44608981 -173428177 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 181 269 75 15 chr3 44609841 44609863 -173427295 - MER5A DNA MER1_type -6 183 164 234 0 0 0 chr3 44609863 44609889 -173427269 + (CAG)n Simple_repeat Simple_repeat 1 26 0 181 269 75 15 chr3 44609889 44609933 -173427225 - MER5A DNA MER1_type -25 164 113 * 272 246 246 0 chr3 44609892 44610002 -173427156 + MER5A DNA MER1_type 47 183 -6 463 296 56 0 chr3 44610117 44610259 -173426899 + MIR SINE MIR 25 174 -88 722 171 33 26 chr3 44610975 44611091 -173426067 - THE1B LTR MaLR 0 364 250 1419 166 35 3 chr3 44611091 44611381 -173425777 + L1MA4A LINE L1 5999 6297 -6 722 171 33 26 chr3 44611381 44611393 -173425765 - THE1B LTR MaLR -114 250 240 1969 110 17 30 chr3 44611393 44611693 -173425465 + AluSq SINE Alu 3 298 -15 722 171 33 26 chr3 44611693 44611715 -173425443 - THE1B LTR MaLR -124 240 212 1230 253 119 74 chr3 44611740 44612607 -173424551 + L1ME3A LINE L1 5264 6169 -1 864 176 18 0 chr3 44612608 44612778 -173424380 + L1MB3 LINE L1 6002 6174 -9 2071 105 14 8 chr3 44613155 44613512 -173423646 - LTR7 LTR ERV1 -2 448 1 2207 114 50 13 chr3 44613512 44613890 -173423268 - HERVH LTR ERV1 0 7713 7322 1304 130 33 9 chr3 44613888 44614103 -173423055 - HERVH LTR ERV1 -1894 5819 5600 * 4342 138 0 1 chr3 44614110 44614767 -173422391 - HERVH LTR ERV1 -2570 5143 4488 3431 98 8 6 chr3 44614769 44615270 -173421888 - HERVH LTR ERV1 -3720 3993 3492 * 20624 98 59 15 chr3 44615260 44618412 -173418746 - HERVH LTR ERV1 -4423 3290 1 2128 88 11 8 chr3 44618414 44618772 -173418386 - LTR7 LTR ERV1 -2 448 1 182 282 10 78 chr3 44620470 44620573 -173416585 + L2 LINE L2 2554 2649 -665 45 55 0 0 chr3 44621315 44621388 -173415770 + AT_rich Low_complexity Low_complexity 1 73 0 2722 179 62 81 chr3 44624777 44625444 -173411714 + LTR8A LTR ERV1 1 654 -73 2159 133 80 0 chr3 44625444 44625781 -173411377 - THE1B LTR MaLR 0 364 1 2722 179 62 81 chr3 44625781 44625854 -173411304 + LTR8A LTR ERV1 654 727 0 598 196 0 0 chr3 44625855 44625957 -173411201 + HUERS-P1 LTR ERV1 2 103 -6160 235 289 70 9 chr3 44626644 44626758 -173410400 + L1M4 LINE L1 2 122 -6420 1183 230 4 4 chr3 44626882 44627121 -173410037 + MLT1A1 LTR MaLR 127 365 0 21 36 0 0 chr3 44627182 44627210 -173409948 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 44627215 44627236 -173409922 + AT_rich Low_complexity Low_complexity 1 21 0 878 224 15 5 chr3 44627254 44627459 -173409699 + MER3 DNA MER1_type 2 208 -1 328 301 54 81 chr3 44627582 44627841 -173409317 + L1ME LINE L1 5411 5662 -459 889 225 58 119 chr3 44627859 44628280 -173408878 + MLT1A1 LTR MaLR 1 365 0 386 250 64 17 chr3 44628341 44628513 -173408645 - L1M4 LINE L1 -943 5203 5024 1240 80 17 28 chr3 44628554 44628730 -173408428 - AluY SINE Alu -18 293 120 344 206 87 56 chr3 44628815 44628941 -173408217 - L1M4 LINE L1 -1200 4946 4817 286 281 180 23 chr3 44629696 44629824 -173407334 + MIR SINE MIR 4 151 -111 898 361 69 20 chr3 44629884 44630626 -173406532 + ERVL LTR ERVL 1375 2152 -3612 833 310 54 46 chr3 44630740 44631042 -173406116 + ERVL LTR ERVL 2311 2620 -3144 1937 145 0 3 chr3 44631042 44631339 -173405819 + AluSx SINE Alu 1 296 -16 833 310 54 46 chr3 44631339 44631533 -173405625 + ERVL LTR ERVL 2620 2811 -2953 2960 159 50 45 chr3 44631554 44632169 -173404989 - LTR29 LTR ERV1 -4 618 1 1140 221 85 45 chr3 44632313 44632643 -173404515 - MER2 DNA MER2_type -1 343 1 1513 241 104 16 chr3 44632676 44633120 -173404038 + L2 LINE L2 1111 1593 -1721 1333 196 54 122 chr3 44633121 44633935 -173403223 + LTR8A LTR ERV1 1 727 0 865 243 176 35 chr3 44633984 44634297 -173402861 + LTR18A LTR ERVL 1 357 0 310 475 212 12 chr3 44634297 44634712 -173402446 + L2 LINE L2 1639 2136 -1178 180 152 0 0 chr3 44635669 44635702 -173401456 + CT-rich Low_complexity Low_complexity 2 34 0 405 264 114 69 chr3 44636425 44636641 -173400517 - MIR SINE MIR -2 260 38 1923 167 20 76 chr3 44636695 44637155 -173400003 + L1MA9 LINE L1 5879 6312 0 904 277 61 79 chr3 44638574 44639068 -173398090 - L2 LINE L2 0 3313 2829 16940 29 1 0 chr3 44639089 44641862 -173395296 - L1PA3 LINE L1 0 6155 3372 257 397 86 44 chr3 44642025 44642410 -173394748 + L2 LINE L2 2872 3272 0 4867 139 76 18 chr3 44643445 44644298 -173392860 - MER4D LTR ERV1 0 903 1 238 193 0 53 chr3 44644350 44644407 -173392751 - MIR SINE MIR -2 260 207 249 229 12 72 chr3 44644951 44645034 -173392124 + L2 LINE L2 3186 3263 -9 3136 127 99 40 chr3 44645232 44645830 -173391328 - MER41B LTR ERV1 -2 633 1 21 0 0 0 chr3 44646173 44646194 -173390964 + AT_rich Low_complexity Low_complexity 1 21 0 1234 203 143 12 chr3 44646895 44647336 -173389822 + LTR55 LTR ERV 1 537 -11 202 341 22 11 chr3 44647500 44647591 -173389567 - MIR SINE MIR -97 165 74 1507 230 6 6 chr3 44647617 44647969 -173389189 - MER57A LTR ERV1 0 403 52 2042 141 38 30 chr3 44648129 44648499 -173388659 - THE1C LTR MaLR 0 375 3 261 284 0 25 chr3 44648552 44648633 -173388525 - LTR67 LTR ERVL 0 557 479 22 70 0 0 chr3 44649151 44649194 -173387964 + AT_rich Low_complexity Low_complexity 1 43 0 2569 201 51 21 chr3 44649830 44650697 -173386461 - L1M4 LINE L1 -386 5798 4906 22 56 0 0 chr3 44650850 44650886 -173386272 + AT_rich Low_complexity Low_complexity 1 36 0 2063 99 0 67 chr3 44651433 44651747 -173385411 + AluY SINE Alu 1 293 -18 4804 251 42 37 chr3 44652232 44654742 -173382416 - L1ME1 LINE L1 -213 5953 3437 * 9558 207 31 29 chr3 44654740 44656546 -173380612 - L1PA16 LINE L1 0 6869 5067 1391 150 0 0 chr3 44656546 44656793 -173380365 - L1MA2 LINE L1 0 6304 6058 9558 207 31 29 chr3 44656793 44657871 -173379287 - L1PA16 LINE L1 -1802 5067 3992 1832 141 29 50 chr3 44657871 44658254 -173378904 + THE1C LTR MaLR 1 375 0 9558 207 31 29 chr3 44658254 44659578 -173377580 - L1PA16 LINE L1 -2877 3992 2134 11245 151 14 116 chr3 44659580 44660191 -173376967 - L1PA16 LINE L1 -4725 2124 1452 2023 138 0 0 chr3 44660191 44660480 -173376678 - AluSx SINE Alu -23 289 1 11245 151 14 116 chr3 44660480 44662226 -173374932 - L1PA16 LINE L1 -5397 1452 8 2127 248 104 21 chr3 44662238 44662784 -173374374 - L1ME1 LINE L1 -2702 3444 2790 1837 139 48 43 chr3 44662784 44663157 -173374001 + THE1C LTR MaLR 1 375 0 2127 248 104 21 chr3 44663157 44663527 -173373631 - L1ME1 LINE L1 -3356 2790 2452 265 255 138 21 chr3 44663674 44663819 -173373339 - L1MA2 LINE L1 -2384 5424 5263 357 290 118 42 chr3 44664105 44664529 -173372629 - L1M4 LINE L1 -1199 4947 4492 5808 119 14 7 chr3 44664580 44665890 -173371268 - L1PA15 LINE L1 -6 6159 4843 319 304 183 13 chr3 44667083 44667250 -173369908 + MIR SINE MIR 11 203 -59 320 277 57 35 chr3 44667744 44667885 -173369273 - MIR SINE MIR -3 259 116 266 336 36 9 chr3 44668280 44668390 -173368768 + MIR3 SINE MIR 94 206 -2 253 297 11 0 chr3 44668495 44668586 -173368572 + (TA)n Simple_repeat Simple_repeat 2 93 0 293 371 30 26 chr3 44668990 44669222 -173367936 - MIR SINE MIR -10 252 20 198 304 230 7 chr3 44669850 44669985 -173367173 - MIR SINE MIR -10 252 88 292 371 30 0 chr3 44671301 44671433 -173365725 + MIR SINE MIR 57 192 -70 26 0 0 0 chr3 44672335 44672361 -173364797 + AT_rich Low_complexity Low_complexity 1 26 0 579 233 125 17 chr3 44672463 44672759 -173364399 - Charlie2 DNA MER1_type -3 2859 2532 365 273 61 0 chr3 44672767 44672866 -173364292 - MIR SINE MIR -131 131 27 367 319 97 32 chr3 44675259 44675444 -173361714 + MIR SINE MIR 48 244 -18 1685 128 77 4 chr3 44675981 44676254 -173360904 - AluSx SINE Alu -19 293 1 2442 152 19 13 chr3 44676274 44676736 -173360422 - L1MA4 LINE L1 -6 6294 5830 1242 153 4 55 chr3 44676736 44676950 -173360208 + L1MA4 LINE L1 5587 5788 -512 2201 112 0 0 chr3 44676950 44677246 -173359912 - AluSx SINE Alu -16 296 1 1242 153 4 55 chr3 44677246 44677285 -173359873 + L1MA4 LINE L1 5788 5827 -473 440 330 54 41 chr3 44677322 44677616 -173359542 - L1ME4a LINE L1 -207 5914 5617 2119 104 27 3 chr3 44678113 44678411 -173358747 - AluSq SINE Alu -8 305 1 297 330 131 55 chr3 44679238 44679620 -173357538 - L2 LINE L2 -19 3294 2884 2473 47 0 31 chr3 44681295 44681613 -173355545 + AluY SINE Alu 1 308 -3 297 346 85 13 chr3 44681922 44682075 -173355083 + MIR SINE MIR 12 175 -87 21 57 0 0 chr3 44682568 44682603 -173354555 + AT_rich Low_complexity Low_complexity 1 35 0 568 306 52 6 chr3 44682870 44683043 -173354115 + MIR SINE MIR 20 200 -62 249 139 0 0 chr3 44683096 44683139 -173354019 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr3 44683145 44683173 -173353985 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 44684967 44684988 -173352170 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr3 44686481 44686514 -173350644 + (TG)n Simple_repeat Simple_repeat 2 34 0 862 218 119 72 chr3 44686514 44686818 -173350340 - LTR16A1 LTR ERVL -3 454 125 906 214 11 11 chr3 44686818 44687005 -173350153 + MER5A DNA MER1_type 2 188 -1 862 218 119 72 chr3 44687005 44687103 -173350055 - LTR16A1 LTR ERVL -332 125 33 1451 181 0 8 chr3 44687121 44687386 -173349772 - L1PA15 LINE L1 0 6165 5903 12566 245 19 30 chr3 44687401 44688385 -173348773 - L1PA13 LINE L1 -1235 5562 4569 2205 148 60 24 chr3 44688385 44688798 -173348360 + MSTA LTR MaLR 1 428 0 12566 245 19 30 chr3 44688798 44692132 -173345026 - L1PA13 LINE L1 -2228 4569 1295 2208 310 18 29 chr3 44692109 44692826 -173344332 - L1PA13 LINE L1 -5982 805 97 * 22 0 0 0 chr3 44693510 44693532 -173343626 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 44694505 44694527 -173342631 + AT_rich Low_complexity Low_complexity 1 22 0 1893 278 121 58 chr3 44695685 44696758 -173340400 - HAL1 LINE L1 -32 2475 1244 3555 30 2 11 chr3 44696758 44697195 -173339963 - L1PA4 LINE L1 0 6155 5723 1893 278 121 58 chr3 44697195 44697899 -173339259 - HAL1 LINE L1 -1263 1244 586 355 317 73 94 chr3 44697900 44698379 -173338779 - HAL1 LINE L1 -1949 558 90 27 0 0 0 chr3 44698958 44698985 -173338173 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 44700229 44700265 -173336893 + AT_rich Low_complexity Low_complexity 1 36 0 402 127 14 0 chr3 44700481 44700552 -173336606 - MSTB LTR MaLR 0 426 355 874 114 8 8 chr3 44702367 44702498 -173334660 + AluJb SINE Alu 1 131 -181 531 295 143 5 chr3 44704259 44704483 -173332675 + MIR SINE MIR 6 260 -2 189 0 0 0 chr3 44705318 44705339 -173331819 + (TG)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 44705933 44705954 -173331204 + AT_rich Low_complexity Low_complexity 1 21 0 540 0 0 0 chr3 44706567 44706627 -173330531 + (TG)n Simple_repeat Simple_repeat 2 61 0 219 146 0 0 chr3 44707514 44707555 -173329603 + (TC)n Simple_repeat Simple_repeat 2 42 0 188 196 0 36 chr3 44707554 44707610 -173329548 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 * 1504 224 87 9 chr3 44707653 44708190 -173328968 + LTR65 LTR ERV1 2 668 -1 203 321 151 0 chr3 44709456 44709562 -173327596 - MIR3 SINE MIR -6 202 81 2209 113 0 0 chr3 44709821 44710114 -173327044 - AluSx SINE Alu -17 295 3 200 309 41 93 chr3 44710143 44710240 -173326918 - L2 LINE L2 -3 3269 3178 392 256 0 115 chr3 44710815 44710971 -173326187 - MIR3 SINE MIR -8 200 63 343 258 74 74 chr3 44711719 44711882 -173325276 - MIR SINE MIR -18 244 82 21 0 0 0 chr3 44712238 44712259 -173324899 + AT_rich Low_complexity Low_complexity 1 21 0 693 159 0 0 chr3 44712625 44712732 -173324426 + FLAM_A SINE Alu 3 109 -33 207 276 0 0 chr3 44713899 44713975 -173323183 + (TATATG)n Simple_repeat Simple_repeat 4 79 0 238 333 0 0 chr3 44713978 44714068 -173323090 + MER94 DNA DNA 5 94 -40 23 33 0 0 chr3 44714170 44714200 -173322958 + AT_rich Low_complexity Low_complexity 1 30 0 293 312 40 27 chr3 44715757 44715923 -173321235 - MIR SINE MIR -34 228 62 466 267 148 49 chr3 44716776 44717121 -173320037 + LTR33 LTR ERVL 76 454 -67 366 357 56 0 chr3 44717184 44717310 -173319848 + MIR SINE MIR 39 171 -91 211 340 0 80 chr3 44717889 44717989 -173319169 + MIR SINE MIR 35 126 -82 187 214 24 0 chr3 44718966 44719008 -173318150 - MIR SINE MIR -111 151 109 754 224 5 41 chr3 44719132 44719328 -173317830 + MER5A DNA MER1_type 1 189 0 523 245 107 36 chr3 44722749 44722945 -173314213 - MER63A DNA MER1_type 0 210 1 279 0 0 0 chr3 44723996 44724027 -173313131 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2230 110 0 20 chr3 44724728 44725029 -173312129 + AluSc SINE Alu 1 295 -14 191 288 17 51 chr3 44725590 44725649 -173311509 - L3 LINE CR1 -12 1565 1509 492 289 138 22 chr3 44726317 44726542 -173310616 + MIR SINE MIR 1 251 -11 21 0 0 0 chr3 44728272 44728293 -173308865 + AT_rich Low_complexity Low_complexity 1 21 0 539 324 80 25 chr3 44731889 44732127 -173305031 - MIR SINE MIR -6 256 6 1622 139 139 67 chr3 44734488 44734833 -173302325 - MSTB1 LTR MaLR 0 432 52 2122 102 0 44 chr3 44734833 44735148 -173302010 - AluSp SINE Alu -12 301 1 1622 139 139 67 chr3 44735148 44735205 -173301953 - MSTB1 LTR MaLR -380 52 1 1791 149 66 30 chr3 44736063 44736425 -173300733 - THE1C LTR MaLR 0 375 1 25 51 0 0 chr3 44736617 44736656 -173300502 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr3 44737378 44737410 -173299748 + AT_rich Low_complexity Low_complexity 1 32 0 4401 181 95 39 chr3 44739636 44740586 -173296572 - MER52A LTR ERV1 0 1755 753 505 231 87 92 chr3 44740585 44740780 -173296378 - MER52A LTR ERV1 -1560 195 2 * 190 378 0 9 chr3 44740964 44741075 -173296083 + L3b LINE CR1 1319 1428 -155 245 240 0 0 chr3 44741399 44741449 -173295709 + (CA)n Simple_repeat Simple_repeat 1 50 0 26 30 0 0 chr3 44741481 44741514 -173295644 + AT_rich Low_complexity Low_complexity 1 33 0 222 286 26 13 chr3 44741742 44741819 -173295339 + MIR SINE MIR 76 153 -109 228 333 81 11 chr3 44742438 44742525 -173294633 + L3b LINE CR1 1476 1568 -15 24 0 0 0 chr3 44742741 44742765 -173294393 + AT_rich Low_complexity Low_complexity 1 24 0 1959 275 67 40 chr3 44743660 44744830 -173292328 + L1ME3A LINE L1 4955 6153 -17 278 281 35 18 chr3 44745510 44745624 -173291534 - MLT1I LTR MaLR 0 409 294 1388 253 48 61 chr3 44745747 44745783 -173291375 - HERV16 LTR ERVL -2605 2391 2356 2004 119 0 60 chr3 44745783 44746101 -173291057 + AluSq SINE Alu 1 299 -14 1388 253 48 61 chr3 44746101 44746585 -173290573 - HERV16 LTR ERVL -2640 2356 1878 1832 213 71 26 chr3 44746585 44747007 -173290151 + MLT2B1 LTR ERVL 1 441 -79 2209 156 0 0 chr3 44747033 44747372 -173289786 + MER7A DNA MER2_type 1 337 -9 241 184 0 0 chr3 44747382 44747431 -173289727 + MLT2B1 LTR ERVL 472 520 0 998 322 31 29 chr3 44747435 44748162 -173288996 - HERV16 LTR ERVL -3213 1783 1059 24 32 0 0 chr3 44748514 44748545 -173288613 + AT_rich Low_complexity Low_complexity 1 31 0 528 283 53 89 chr3 44748659 44749266 -173287892 + L1ME3A LINE L1 3652 4236 -1910 23 33 0 0 chr3 44749285 44749315 -173287843 + AT_rich Low_complexity Low_complexity 1 30 0 293 283 83 20 chr3 44749741 44750121 -173287037 + L1ME3A LINE L1 4944 5354 -805 440 278 97 27 chr3 44750507 44750766 -173286392 + L1ME3A LINE L1 5692 5968 -202 207 0 0 0 chr3 44751346 44751369 -173285789 + (TG)n Simple_repeat Simple_repeat 1 23 0 524 311 109 48 chr3 44752099 44752183 -173284975 + L1ME LINE L1 652 729 -5351 1951 148 7 0 chr3 44752183 44752486 -173284672 + AluSx SINE Alu 1 305 -7 524 311 109 48 chr3 44752486 44752912 -173284246 + L1ME LINE L1 729 1178 -4902 300 27 0 0 chr3 44752914 44752951 -173284207 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1105 276 122 22 chr3 44752992 44753401 -173283757 - MLT1H LTR MaLR -97 452 3 294 151 0 139 chr3 44754093 44754133 -173283025 - MER5A DNA MER1_type -83 106 83 3476 70 18 0 chr3 44754133 44754590 -173282568 - L1PA8 LINE L1 0 6172 5708 294 151 0 139 chr3 44754590 44754635 -173282523 - MER5A DNA MER1_type -106 83 33 878 222 11 0 chr3 44754953 44755129 -173282029 + MER45A DNA AcHobo 1 178 0 435 52 0 0 chr3 44755449 44755507 -173281651 + (TG)n Simple_repeat Simple_repeat 2 59 0 717 149 9 0 chr3 44755507 44755621 -173281537 - AluJb SINE Alu -197 115 1 717 222 54 10 chr3 44756919 44757122 -173280036 - L1MC3 LINE L1 -21 7764 7553 820 20 0 0 chr3 44757139 44757237 -173279921 - L1PA2 LINE L1 0 6155 6058 279 0 0 0 chr3 44760146 44760177 -173276981 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr3 44760256 44760276 -173276882 + (CCCTAA)n Simple_repeat Simple_repeat 5 24 0 249 108 0 0 chr3 44760278 44760315 -173276843 + (TG)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr3 44761568 44761599 -173275559 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 376 20 0 chr3 44764445 44764546 -173272612 - MIR3 SINE MIR -23 185 83 1328 214 7 17 chr3 44766104 44766398 -173270760 - MER58B DNA MER1_type 0 341 51 283 324 97 16 chr3 44766698 44766883 -173270275 + MLT1H LTR MaLR 127 326 -223 291 267 69 10 chr3 44766933 44767034 -173270124 + MLT1H LTR MaLR 399 505 -44 2480 39 0 0 chr3 44768255 44768540 -173268618 + AluY SINE Alu 1 285 -26 1672 177 0 0 chr3 44768715 44769026 -173268132 + AluY SINE Alu 1 311 0 261 302 165 16 chr3 44769236 44769418 -173267740 + HAL1 LINE L1 1209 1417 -1090 1930 146 32 35 chr3 44769418 44769794 -173267364 - THE1C LTR MaLR 0 375 1 10162 122 34 8 chr3 44769800 44771333 -173265825 - THE1C-int LTR MaLR -7 1573 1 1725 162 37 40 chr3 44771333 44771709 -173265449 - THE1C LTR MaLR 0 375 1 248 335 128 5 chr3 44771709 44771912 -173265246 + HAL1 LINE L1 1413 1640 -867 243 219 12 61 chr3 44772169 44772251 -173264907 - L1MC5 LINE L1 -76 7885 7808 26 74 0 0 chr3 44772269 44772323 -173264835 + AT_rich Low_complexity Low_complexity 1 54 0 1313 266 70 19 chr3 44773154 44773567 -173263591 - LTR16A1 LTR ERVL -2 455 22 239 312 123 7 chr3 44773893 44774031 -173263127 + MIR SINE MIR 85 238 -24 2662 254 32 36 chr3 44774266 44775266 -173261892 - L1ME1 LINE L1 -5 6161 5164 250 163 0 20 chr3 44775255 44775304 -173261854 + L1ME4a LINE L1 5969 6016 -105 * 481 188 0 40 chr3 44775809 44775910 -173261248 - MLT1A1 LTR MaLR -265 100 4 184 276 35 46 chr3 44776055 44776142 -173261016 - MIR SINE MIR -83 179 94 1324 212 42 10 chr3 44776307 44776472 -173260686 - AluJo SINE Alu -15 297 118 723 44 0 0 chr3 44776472 44776563 -173260595 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1324 212 42 10 chr3 44776563 44776685 -173260473 - AluJo SINE Alu -194 118 1 2075 90 17 43 chr3 44776841 44777142 -173260016 + AluY SINE Alu 1 293 -18 263 313 24 24 chr3 44777563 44777646 -173259512 - MIR SINE MIR -92 116 34 333 208 13 0 chr3 44778511 44778588 -173258570 + MER116 DNA Mariner 1 78 -2 355 237 169 21 chr3 44778776 44779012 -173258146 - L1ME1 LINE L1 -1534 4612 4342 37835 36 2 1 chr3 44779121 44784202 -173252956 - L1PA3 LINE L1 -322 5833 749 961 250 34 15 chr3 44784205 44784469 -173252689 - L1M2 LINE L1 -6576 273 5 499 182 0 0 chr3 44784469 44784546 -173252612 - Tigger3(Golem) DNA MER2_type -2950 79 3 916 196 34 123 chr3 44784546 44784928 -173252230 + L1MB8 LINE L1 5826 6173 -5 2841 82 0 11 chr3 44785354 44785732 -173251426 + THE1C LTR MaLR 2 375 0 245 270 11 22 chr3 44787130 44787219 -173249939 + L1MC3 LINE L1 4911 4998 -1148 321 360 45 48 chr3 44787322 44787713 -173249445 + L1MEc LINE L1 39 430 -5966 1681 143 35 47 chr3 44787713 44787937 -173249221 - MER44D DNA MER2_type -1882 609 384 537 16 0 0 chr3 44787937 44787999 -173249159 + (CA)n Simple_repeat Simple_repeat 2 63 0 1681 143 35 47 chr3 44787999 44788117 -173249041 - MER44D DNA MER2_type -2107 384 1 321 360 45 48 chr3 44788117 44788591 -173248567 + L1MEc LINE L1 430 901 -5495 * 5287 255 59 12 chr3 44788587 44789874 -173247284 + L1MC3 LINE L1 5477 6824 -961 2634 240 153 14 chr3 44789885 44790711 -173246447 - L1M4c LINE L1 -5415 969 30 239 250 79 0 chr3 44791624 44791700 -173245458 + (AATAG)n Simple_repeat Simple_repeat 2 83 0 23 0 0 0 chr3 44792053 44792076 -173245082 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr3 44794849 44794870 -173242288 + (CA)n Simple_repeat Simple_repeat 2 22 0 199 143 18 36 chr3 44796007 44796063 -173241095 + A-rich Low_complexity Low_complexity 5 59 0 2302 185 32 28 chr3 44796346 44796745 -173240413 + MLT1C LTR MaLR 1 404 -63 2815 13 0 0 chr3 44796745 44797053 -173240105 - AluY SINE Alu -3 308 1 2302 185 32 28 chr3 44797053 44797118 -173240040 + MLT1C LTR MaLR 404 467 0 314 200 94 12 chr3 44797999 44798084 -173239074 - MIR SINE MIR -1 261 170 236 297 16 70 chr3 44798741 44798869 -173238289 - MIR SINE MIR -70 192 72 24 0 0 0 chr3 44799100 44799124 -173238034 + AT_rich Low_complexity Low_complexity 1 24 0 5031 97 8 14 chr3 44799125 44799857 -173237301 - L1PA10 LINE L1 -2 6166 5439 485 328 116 17 chr3 44799960 44800314 -173236844 - L1M4 LINE L1 -1606 4540 4152 1451 205 0 47 chr3 44800323 44800640 -173236518 - AluJb SINE Alu -10 302 1 251 120 0 40 chr3 44800828 44800878 -173236280 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 643 187 22 30 chr3 44800892 44801026 -173236132 + L1MD3 LINE L1 6726 6858 -1137 289 365 74 5 chr3 44801066 44801255 -173235903 - MIR SINE MIR -15 247 46 213 269 0 77 chr3 44803059 44803137 -173234021 - MIR SINE MIR -73 189 118 466 275 23 15 chr3 44803305 44803436 -173233722 + MIR SINE MIR 110 241 -21 240 237 15 37 chr3 44803671 44803806 -173233352 + (TTATA)n Simple_repeat Simple_repeat 5 136 0 2013 146 9 3 chr3 44803832 44804155 -173233003 - MER7A DNA MER2_type -23 323 1 444 350 48 18 chr3 44804455 44804852 -173232306 - MLT1I LTR MaLR 0 409 1 2263 103 10 0 chr3 44805126 44805428 -173231730 - AluSc SINE Alu -4 305 1 671 35 12 0 chr3 44806040 44806126 -173231032 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 768 170 0 30 chr3 44806418 44806553 -173230605 - AluJb SINE Alu -181 131 1 482 288 52 47 chr3 44806846 44807079 -173230079 - L1ME LINE L1 -443 5727 5494 30 45 0 0 chr3 44807236 44807280 -173229878 + AT_rich Low_complexity Low_complexity 1 44 0 1920 133 21 0 chr3 44807317 44807519 -173229639 - AluSx SINE Alu 0 330 118 194 0 39 0 chr3 44807519 44807545 -173229613 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1920 133 21 0 chr3 44807545 44807666 -173229492 - AluSx SINE Alu -212 118 1 588 290 0 18 chr3 44807670 44807887 -173229271 - L1MC4 LINE L1 -472 7570 7358 232 316 66 0 chr3 44807947 44808023 -173229135 + LTR16A1 LTR ERVL 57 137 -320 1342 264 43 23 chr3 44808400 44808915 -173228243 - L1ME1 LINE L1 -5 6161 5637 228 367 32 6 chr3 44808986 44809144 -173228014 - L1MEc LINE L1 -5925 471 310 378 245 0 49 chr3 44809156 44809258 -173227900 - L1M4 LINE L1 -2260 3886 3790 324 0 0 0 chr3 44809258 44809294 -173227864 + (TG)n Simple_repeat Simple_repeat 2 37 0 1835 135 4 4 chr3 44809381 44809662 -173227496 - AluSx SINE Alu -13 299 19 8108 216 20 15 chr3 44809724 44811348 -173225810 + L1M1 LINE L1 11 1642 -5923 309 136 0 0 chr3 44811351 44811395 -173225763 + L1M1 LINE L1 1731 1774 -5791 21915 191 22 20 chr3 44811412 44811915 -173225243 - L1PA11 LINE L1 -266 7346 6845 2321 92 0 10 chr3 44811915 44812220 -173224938 - AluY SINE Alu -5 306 5 21915 191 22 20 chr3 44812220 44817218 -173219940 - L1PA11 LINE L1 -767 6845 1008 2275 102 3 0 chr3 44817218 44817512 -173219646 + AluSx SINE Alu 1 295 -17 21915 191 22 20 chr3 44817512 44818515 -173218643 - L1PA11 LINE L1 -6604 1008 8 461 299 43 11 chr3 44818763 44818947 -173218211 - L1MEc LINE L1 -5988 408 219 247 252 43 43 chr3 44819818 44819933 -173217225 + MLT1H1 LTR MaLR 439 553 -2 321 278 30 53 chr3 44819970 44820103 -173217055 + MIR SINE MIR 123 252 -10 804 262 22 71 chr3 44821197 44821697 -173215461 + MLT2C1 LTR ERVL 1 458 -6 218 368 21 21 chr3 44821698 44821793 -173215365 + L2 LINE L2 1058 1152 -2162 180 0 0 0 chr3 44822937 44822957 -173214201 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4732 170 23 48 chr3 44822957 44824542 -173212616 + L1MA4 LINE L1 4705 6251 -49 240 264 0 0 chr3 44824544 44824597 -173212561 + L1M1 LINE L1 11 63 -7502 2557 155 14 9 chr3 44824597 44825023 -173212135 - MSTA LTR MaLR 0 428 1 1509 170 30 27 chr3 44825023 44825323 -173211835 - MSTA-int LTR MaLR 0 1651 1351 2648 203 37 4 chr3 44825324 44825807 -173211351 - MSTA-int LTR MaLR -764 887 389 * 5530 185 33 46 chr3 44825805 44826719 -173210439 + L1MA3 LINE L1 4088 5013 -1292 1406 187 53 14 chr3 44826719 44827002 -173210156 + AluJb SINE Alu 3 296 -16 5530 185 33 46 chr3 44827002 44828072 -173209086 + L1MA3 LINE L1 5013 6052 -253 226 136 9 91 chr3 44828101 44828211 -173208947 + (TATAA)n Simple_repeat Simple_repeat 5 105 0 1152 100 33 0 chr3 44828212 44828392 -173208766 + L1MA3 LINE L1 6120 6305 0 821 300 50 27 chr3 44828679 44829254 -173207904 + MLT2E LTR ERVL 3 628 0 499 334 29 32 chr3 44829513 44829824 -173207334 + ERVL-E LTR ERVL 316 625 -5139 613 337 4 4 chr3 44829991 44830258 -173206900 + ERVL-E LTR ERVL 911 1177 -4587 1149 316 0 53 chr3 44830277 44830670 -173206488 - LTR16B LTR ERVL -92 372 1 508 288 21 25 chr3 44830877 44831117 -173206041 + L1M4 LINE L1 2680 2918 -3228 389 325 48 43 chr3 44831322 44831510 -173205648 + MIR SINE MIR 7 195 -67 1065 168 9 44 chr3 44832194 44832420 -173204738 - MER20 DNA MER1_type 0 219 2 189 0 0 0 chr3 44832666 44832687 -173204471 + (TG)n Simple_repeat Simple_repeat 2 22 0 302 246 37 15 chr3 44833308 44833442 -173203716 - L1M4 LINE L1 -3642 2504 2368 25 0 0 0 chr3 44833527 44833552 -173203606 + AT_rich Low_complexity Low_complexity 1 25 0 6290 180 49 24 chr3 44833558 44835810 -173201348 - L1MA9 LINE L1 -38 6274 3959 3619 171 17 4 chr3 44835821 44836516 -173200642 - L1MA5 LINE L1 -2 6298 5595 448 232 79 17 chr3 44836528 44836705 -173200453 - L1MD3 LINE L1 -110 7885 7698 2006 133 15 6 chr3 44837909 44838240 -173198918 + L1MA4 LINE L1 5909 6242 -58 335 350 25 12 chr3 44838454 44838614 -173198544 - MIR SINE MIR -42 220 59 243 0 0 0 chr3 44839177 44839204 -173197954 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4924 122 4 49 chr3 44839347 44840085 -173197073 - L1PA4 LINE L1 -6 6149 5445 1655 210 64 35 chr3 44840120 44840573 -173196585 + MER31B LTR ERV1 1 466 0 571 96 0 0 chr3 44840729 44840802 -173196356 + Tigger3(Golem) DNA MER2_type 36 108 -2921 * 3789 126 89 13 chr3 44840794 44841492 -173195666 + Tigger3(Golem) DNA MER2_type 2279 3029 0 22 0 0 0 chr3 44841732 44841754 -173195404 + AT_rich Low_complexity Low_complexity 1 22 0 182 300 0 50 chr3 44842774 44842834 -173194324 - MIR SINE MIR -4 258 202 574 289 86 15 chr3 44842910 44843266 -173193892 + LTR33 LTR ERVL 104 512 -9 311 322 62 28 chr3 44843484 44843548 -173193610 - MIR SINE MIR -73 189 129 1475 243 67 30 chr3 44843548 44844084 -173193074 - LTR38 LTR ERV1 0 556 1 311 322 62 28 chr3 44844084 44844196 -173192962 - MIR SINE MIR -133 129 7 2338 74 0 0 chr3 44844675 44844987 -173192171 + AluY SINE Alu 1 312 0 1257 293 66 27 chr3 44845039 44845702 -173191456 - L1ME3 LINE L1 -216 6015 5327 23 0 0 0 chr3 44846013 44846036 -173191122 + AT_rich Low_complexity Low_complexity 1 23 0 3741 156 80 6 chr3 44846109 44846771 -173190387 - MER50 LTR ERV1 -23 711 1 335 289 59 7 chr3 44846943 44847095 -173190063 - L1ME3 LINE L1 -4723 1673 1514 2585 208 43 103 chr3 44847159 44847599 -173189559 - MER21B LTR ERV1 -109 754 380 1428 185 83 0 chr3 44847599 44847875 -173189283 - AluJo SINE Alu -10 302 4 2585 208 43 103 chr3 44847875 44848223 -173188935 - MER21B LTR ERV1 -483 380 13 25 0 0 0 chr3 44848347 44848372 -173188786 + AT_rich Low_complexity Low_complexity 1 25 0 689 226 0 0 chr3 44848430 44848576 -173188582 + L1MD3 LINE L1 7830 7975 -20 203 133 0 0 chr3 44849508 44849538 -173187620 + (CA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 44850003 44850025 -173187133 + AT_rich Low_complexity Low_complexity 1 22 0 1362 223 128 47 chr3 44850439 44851164 -173185994 - L1MC5 LINE L1 -304 7657 6874 23 68 0 0 chr3 44851183 44851227 -173185931 + AT_rich Low_complexity Low_complexity 1 44 0 4711 136 44 7 chr3 44851227 44852065 -173185093 - L1MA6 LINE L1 -6 6294 5426 6495 219 22 102 chr3 44852067 44852998 -173184160 - L1 LINE L1 -1224 6341 5338 4927 163 26 13 chr3 44852998 44853907 -173183251 + MER49 LTR ERV1 3 923 0 6495 219 22 102 chr3 44853907 44854299 -173182859 - L1 LINE L1 -2227 5338 4916 2366 152 24 36 chr3 44854299 44854655 -173182503 + MSTC LTR MaLR 10 362 -66 2083 136 7 0 chr3 44854655 44854965 -173182193 + AluSx SINE Alu 1 312 0 2366 152 24 36 chr3 44854965 44855029 -173182129 + MSTC LTR MaLR 362 425 -3 6495 219 22 102 chr3 44855029 44856595 -173180563 - L1 LINE L1 -2649 4916 3462 2211 194 22 18 chr3 44856718 44857214 -173179944 - L1 LINE L1 -2221 5344 4847 * 5880 127 83 4 chr3 44857182 44858247 -173178911 - L1 LINE L1 -3925 3640 2492 293 278 0 0 chr3 44858698 44858788 -173178370 + L1MC4 LINE L1 6614 6703 -1339 * 300 228 0 22 chr3 44858746 44858838 -173178320 - L1MC4 LINE L1 -1339 6703 6614 1812 57 0 4 chr3 44858867 44859097 -173178061 - L1PA7 LINE L1 -15 6139 5911 8493 86 17 1 chr3 44859208 44860975 -173176183 - L1PA7 LINE L1 -217 5937 4149 5605 193 28 6 chr3 44860958 44862816 -173174342 - L1MA4A LINE L1 -331 5972 4075 * 16143 158 19 8 chr3 44862916 44865842 -173171316 - L1P LINE L1 -837 5309 2355 5218 224 43 50 chr3 44865849 44867443 -173169715 - L1P3 LINE L1 -4510 1941 400 1961 120 67 0 chr3 44867443 44867726 -173169432 + AluSx SINE Alu 1 302 -10 5218 224 43 50 chr3 44867726 44868114 -173169044 - L1P3 LINE L1 -6051 400 11 1960 129 29 0 chr3 44868298 44868578 -173168580 - AluSx SINE Alu -24 288 1 26 0 0 0 chr3 44869380 44869406 -173167752 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 44869517 44869546 -173167612 + AT_rich Low_complexity Low_complexity 1 29 0 1465 217 65 12 chr3 44870321 44870662 -173166496 + L1MB7 LINE L1 5826 6184 0 33 56 0 0 chr3 44870705 44870759 -173166399 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr3 44870817 44870845 -173166313 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 44871270 44871298 -173165860 + AT_rich Low_complexity Low_complexity 1 28 0 1452 173 111 15 chr3 44872105 44872446 -173164712 - MLT1A2 LTR MaLR 0 374 1 356 244 106 16 chr3 44872670 44872793 -173164365 + L1ME4a LINE L1 5985 6118 -3 6072 91 25 5 chr3 44872900 44874180 -173162978 - L1PA8A LINE L1 -1 6130 4840 310 318 14 84 chr3 44874730 44875016 -173162142 + L2 LINE L2 2152 2417 -897 44149 38 4 2 chr3 44875785 44881926 -173155232 + L1PA4 LINE L1 4 6152 -3 23 33 0 0 chr3 44881926 44881956 -173155202 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 44881974 44882002 -173155156 + AT_rich Low_complexity Low_complexity 1 28 0 1451 166 4 18 chr3 44882291 44882569 -173154589 - L1MB7 LINE L1 -16 6168 5895 1272 164 5 5 chr3 44882843 44883051 -173154107 + AluJo SINE Alu 87 294 -18 1021 216 118 31 chr3 44886529 44886886 -173150272 - LTR37A LTR ERV1 0 426 39 890 197 22 0 chr3 44887287 44887470 -173149688 + MER5A DNA MER1_type 3 189 0 795 174 33 33 chr3 44888111 44888295 -173148863 + L1MA9 LINE L1 6091 6274 -38 266 341 52 75 chr3 44888401 44888750 -173148408 - LTR16C LTR ERVL -67 424 84 219 356 83 0 chr3 44889034 44889166 -173147992 + MIR SINE MIR 22 164 -98 488 272 185 0 chr3 44889240 44889381 -173147777 - MIR SINE MIR -1 261 147 249 33 0 0 chr3 44889381 44889411 -173147747 + (CA)n Simple_repeat Simple_repeat 2 31 0 488 272 185 0 chr3 44889411 44889464 -173147694 - MIR SINE MIR -115 147 31 1530 240 179 7 chr3 44890570 44891116 -173146042 + L1MC4a LINE L1 6433 7072 -736 230 175 0 0 chr3 44891129 44891169 -173145989 + L1MC4 LINE L1 7211 7250 -792 302 257 129 24 chr3 44891170 44891380 -173145778 + L1MC4 LINE L1 7803 8034 -8 922 155 81 0 chr3 44891620 44891768 -173145390 + AluJb SINE Alu 138 297 -15 187 136 271 51 chr3 44892144 44892203 -173144955 - MIR SINE MIR -16 246 175 1467 33 0 16 chr3 44892243 44892425 -173144733 - L1PA3 LINE L1 0 6155 5977 5436 19 0 2 chr3 44892425 44893057 -173144101 + L1PA3 LINE L1 5357 5987 -168 390 42 0 0 chr3 44893601 44893649 -173143509 + (CA)n Simple_repeat Simple_repeat 1 48 0 211 161 0 143 chr3 44894229 44894262 -173142896 + L2 LINE L2 3249 3272 -41 1798 211 24 22 chr3 44894262 44894636 -173142522 + MLT2D LTR ERVL 1 378 -36 273 29 0 0 chr3 44894636 44894670 -173142488 + (CA)n Simple_repeat Simple_repeat 2 35 0 1798 211 24 22 chr3 44894670 44894708 -173142450 + MLT2D LTR ERVL 378 414 0 211 161 0 143 chr3 44894708 44894730 -173142428 + L2 LINE L2 3272 3296 -17 239 321 7 56 chr3 44895696 44895831 -173141327 + MIR SINE MIR 17 144 -64 488 251 256 18 chr3 44896445 44896664 -173140494 + Charlie2 DNA MER1_type 2 272 -2510 336 56 6 41 chr3 44896663 44896717 -173140441 + MLT1A2 LTR MaLR 312 459 -8 * 1002 284 59 22 chr3 44896780 44897136 -173140022 + L1MEc LINE L1 36 404 -5992 2715 200 69 99 chr3 44897136 44897224 -173139934 + L1ME1 LINE L1 5193 5282 -884 7750 17 1 1 chr3 44897224 44898618 -173138540 + L1PA2 LINE L1 4761 6154 -1 2715 200 69 99 chr3 44898618 44898728 -173138430 + L1ME1 LINE L1 5282 5394 -772 1792 175 0 22 chr3 44898728 44899043 -173138115 + AluJo SINE Alu 1 308 -4 2715 200 69 99 chr3 44899043 44899833 -173137325 + L1ME1 LINE L1 5394 6161 -5 185 81 0 54 chr3 44900791 44900828 -173136330 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr3 44901399 44901436 -173135722 + AT_rich Low_complexity Low_complexity 1 37 0 1732 233 30 4 chr3 44901848 44902307 -173134851 - Charlie4a DNA MER1_type -8 500 30 240 35 0 0 chr3 44902903 44902932 -173134226 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 270 323 217 22 chr3 44903535 44903811 -173133347 + L3 LINE CR1 1073 1402 -175 1568 234 17 34 chr3 44904194 44904612 -173132546 + L1MCb LINE L1 1 411 -5634 1290 265 52 7 chr3 44904618 44905082 -173132076 + L1M4 LINE L1 4076 4560 -1586 533 187 22 45 chr3 44905054 44905188 -173131970 + L1MC3 LINE L1 7654 7784 -1 * 201 244 26 51 chr3 44905655 44905733 -173131425 + CT-rich Low_complexity Low_complexity 2 77 0 1727 224 104 38 chr3 44906386 44906971 -173130187 - MLT1E2 LTR MaLR -2 624 1 530 270 95 56 chr3 44907048 44907300 -173129858 - MIR SINE MIR 0 262 1 182 308 90 13 chr3 44907560 44907638 -173129520 + L2 LINE L2 3230 3313 0 239 245 0 0 chr3 44907793 44907842 -173129316 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 379 296 161 0 chr3 44908467 44908653 -173128505 - MIR SINE MIR -31 231 16 1990 143 5 16 chr3 44908690 44909062 -173128096 + L1MA3 LINE L1 4269 4636 -1510 * 6296 126 38 6 chr3 44909039 44910148 -173127010 + L1MA3 LINE L1 5163 6305 0 212 0 36 0 chr3 44910679 44910707 -173126451 + (CA)n Simple_repeat Simple_repeat 1 29 0 261 0 57 0 chr3 44911098 44911133 -173126025 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1838 149 40 0 chr3 44911133 44911408 -173125750 - AluSq SINE Alu -27 286 1 26 0 0 0 chr3 44911408 44911434 -173125724 + AT_rich Low_complexity Low_complexity 1 26 0 581 317 135 43 chr3 44911740 44912382 -173124776 - L2 LINE L2 -3 3310 2603 187 343 14 14 chr3 44912669 44912742 -173124416 + MIR3 SINE MIR 88 160 -48 473 308 97 0 chr3 44912901 44913086 -173124072 + L2 LINE L2 3111 3313 0 869 148 39 13 chr3 44914335 44914490 -173122668 + MLT1A1 LTR MaLR 1 159 -206 2339 249 35 92 chr3 44914506 44915654 -173121504 + L1M1 LINE L1 21 2172 -5393 6846 53 11 3 chr3 44915654 44917031 -173120127 + L1PA7 LINE L1 4755 6141 -13 2339 249 35 92 chr3 44917031 44917256 -173119902 + L1M1 LINE L1 2172 2408 -5157 1173 248 21 176 chr3 44917258 44917948 -173119210 - L1M1 LINE L1 -5559 2006 317 * 9735 192 86 39 chr3 44917933 44921125 -173116033 + L1M1 LINE L1 2391 5814 -1751 414 0 0 0 chr3 44921125 44921171 -173115987 + (TG)n Simple_repeat Simple_repeat 2 47 0 9735 192 86 39 chr3 44921171 44921836 -173115322 + L1M1 LINE L1 5814 6446 -1119 577 219 11 190 chr3 44921836 44922120 -173115038 + LTR28 LTR ERV1 1 894 -841 477 258 38 57 chr3 44922123 44922348 -173114810 + MER61D LTR ERV1 335 1305 -12 3826 208 32 18 chr3 44922437 44923312 -173113846 + MER61D-int LTR ERV1 1 887 -6204 17869 148 19 11 chr3 44923334 44926519 -173110639 + MER61D-int LTR ERV1 1003 4477 -2614 1897 188 30 29 chr3 44926519 44927077 -173110081 - MLT2A2 LTR ERVL 0 554 1 16498 114 13 33 chr3 44927077 44929751 -173107407 + MER52-int LTR ERV1 4473 7091 0 313 240 0 13 chr3 44929762 44929837 -173107321 + MER52C LTR ERV1 612 685 -593 1059 224 5 9 chr3 44929899 44930122 -173107036 + MLT1A1 LTR MaLR 144 365 0 226 387 32 24 chr3 44930272 44930396 -173106762 + L2 LINE L2 3137 3261 -11 390 115 0 0 chr3 44930751 44930769 -173106389 + (TG)n Simple_repeat Simple_repeat 1 79 0 390 115 0 0 chr3 44930769 44930830 -173106328 + (TG)n Simple_repeat Simple_repeat 2 62 0 23 0 0 0 chr3 44931582 44931605 -173105553 + AT_rich Low_complexity Low_complexity 1 23 0 309 184 12 92 chr3 44931707 44931744 -173105414 - MLT1H LTR MaLR -400 149 111 872 249 29 0 chr3 44931744 44931917 -173105241 + MER45A DNA AcHobo 1 178 0 309 184 12 92 chr3 44931917 44932000 -173105158 - MLT1H LTR MaLR -438 111 62 356 231 7 48 chr3 44932035 44932144 -173105014 - MIR SINE MIR -36 172 66 260 308 50 0 chr3 44933093 44933213 -173103945 - MIR SINE MIR -15 247 122 5120 189 10 12 chr3 44933215 44934116 -173103042 - L1PA16 LINE L1 -16 6150 5248 3440 208 29 75 chr3 44934116 44935132 -173102026 - LTR5 LTR ERVK 0 969 1 5120 189 10 12 chr3 44935132 44936248 -173100910 - L1PA16 LINE L1 -918 5248 4147 812 283 108 25 chr3 44936388 44936831 -173100327 - MLT1H LTR MaLR -26 523 1 184 62 125 0 chr3 44937151 44937183 -173099975 + L2 LINE L2 3221 3256 -16 201 229 0 0 chr3 44938073 44938121 -173099037 + (TA)n Simple_repeat Simple_repeat 1 48 0 329 295 42 91 chr3 44938123 44938240 -173098918 - L1MC4a LINE L1 -1836 5972 5851 1601 179 75 20 chr3 44938240 44938586 -173098572 - MLT1A1 LTR MaLR 0 365 1 329 295 42 91 chr3 44938586 44938753 -173098405 - L1MC4a LINE L1 -1957 5851 5702 304 350 105 0 chr3 44938804 44939004 -173098154 + MIR SINE MIR 39 259 -3 308 308 53 58 chr3 44939154 44939362 -173097796 - L1MC4a LINE L1 -2334 5474 5268 311 317 153 36 chr3 44939572 44939821 -173097337 - L2 LINE L2 -196 3117 2840 1837 23 0 0 chr3 44940009 44940224 -173096934 + L1PA2 LINE L1 5941 6155 0 210 185 37 0 chr3 44940540 44940594 -173096564 + (TG)n Simple_repeat Simple_repeat 2 57 0 2205 196 28 74 chr3 44941217 44941798 -173095360 + MLT2B3 LTR ERVL 1 554 0 320 322 42 61 chr3 44942351 44942761 -173094397 - LTR16C LTR ERVL -2 489 88 185 222 16 0 chr3 44943494 44943557 -173093601 + (TA)n Simple_repeat Simple_repeat 1 64 0 230 318 114 39 chr3 44944068 44944348 -173092810 - L1MC/D LINE L1 -1968 5840 5540 233 175 53 18 chr3 44944505 44944562 -173092596 - MER46C DNA MER2_type -225 113 55 1427 199 96 14 chr3 44944722 44945088 -173092070 - MSTD LTR MaLR 0 396 1 25 0 0 0 chr3 44945634 44945659 -173091499 + AT_rich Low_complexity Low_complexity 1 25 0 417 281 42 16 chr3 44946139 44946331 -173090827 - L1M4c LINE L1 -4921 1463 1267 28 79 0 0 chr3 44946381 44946444 -173090714 + AT_rich Low_complexity Low_complexity 1 63 0 24 53 0 0 chr3 44946471 44946509 -173090649 + AT_rich Low_complexity Low_complexity 1 38 0 474 199 46 0 chr3 44946626 44946757 -173090401 + L1M4 LINE L1 4114 4250 -1896 467 253 101 56 chr3 44946850 44947045 -173090113 + L1M4 LINE L1 3401 3586 -2560 2182 86 38 3 chr3 44947045 44947336 -173089822 + AluY SINE Alu 1 301 -10 467 253 101 56 chr3 44947336 44947496 -173089662 + L1M4 LINE L1 3586 3772 -2374 235 206 14 14 chr3 44947568 44947641 -173089517 + L1MDa LINE L1 2522 2594 -3970 3474 219 128 27 chr3 44947738 44949779 -173087379 + L1MDa LINE L1 30 2419 -4326 3107 172 65 39 chr3 44949809 44951678 -173085480 + L1MC3 LINE L1 5825 7785 0 482 296 21 18 chr3 44951705 44951985 -173085173 + L1MDa LINE L1 2713 2993 -3571 1795 207 31 8 chr3 44952261 44952618 -173084540 - MLT1A1 LTR MaLR 0 365 1 338 226 118 10 chr3 44952807 44952909 -173084249 + MIR SINE MIR 113 225 -37 393 39 0 0 chr3 44953844 44953895 -173083263 + (TG)n Simple_repeat Simple_repeat 2 52 0 975 106 0 0 chr3 44953999 44954131 -173083027 - L1P3 LINE L1 -6322 139 8 21 0 0 0 chr3 44954744 44954765 -173082393 + AT_rich Low_complexity Low_complexity 1 21 0 258 317 0 12 chr3 44955062 44955144 -173082014 - MIR3 SINE MIR -18 190 110 271 178 0 0 chr3 44955961 44956006 -173081152 - MIR3 SINE MIR -51 157 113 818 301 70 69 chr3 44956281 44956878 -173080280 + L2 LINE L2 72 669 -2645 516 345 25 25 chr3 44957105 44957424 -173079734 + HAL1 LINE L1 292 610 -1897 527 230 70 62 chr3 44957667 44957904 -173079254 + HAL1 LINE L1 840 1081 -1426 1853 170 10 3 chr3 44957904 44958204 -173078954 + AluJb SINE Alu 3 304 -8 527 230 70 62 chr3 44958204 44958223 -173078935 + HAL1 LINE L1 1081 1098 -1409 574 182 0 0 chr3 44960050 44960160 -173076998 - L1PB4 LINE L1 -100 6056 5947 1042 131 0 34 chr3 44960183 44960359 -173076799 - L1PA13 LINE L1 -11 6152 5983 328 231 74 19 chr3 44960424 44960532 -173076626 - L2 LINE L2 -3 3310 3197 913 280 42 51 chr3 44960532 44961047 -173076111 - MER115 DNA AcHobo -18 675 114 7722 23 2 0 chr3 44961176 44962466 -173074692 - L1PA3 LINE L1 -3 6152 4861 469 219 15 29 chr3 44962662 44962799 -173074359 - L1M4 LINE L1 -2713 3433 3299 503 86 0 0 chr3 44963535 44963605 -173073553 - L1P4 LINE L1 -677 5484 5415 2273 69 0 36 chr3 44963748 44964052 -173073106 + AluY SINE Alu 1 293 -18 4056 117 8 2 chr3 44964546 44965151 -173072007 - MER4B LTR ERV1 0 610 2 477 286 32 8 chr3 44965486 44965612 -173071546 - LTR16A LTR ERVL -297 153 25 746 357 35 27 chr3 44965745 44966372 -173070786 - HERV16 LTR ERVL -388 5376 4745 714 304 35 13 chr3 44966384 44966416 -173070742 - HERV16 LTR ERVL -4045 951 921 270 73 0 0 chr3 44966416 44966457 -173070701 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 714 304 35 13 chr3 44966457 44966654 -173070504 - HERV16 LTR ERVL -4075 921 717 8808 168 41 56 chr3 44966695 44969569 -173067589 - L1M1 LINE L1 -4431 3134 2 414 268 67 37 chr3 44971607 44971771 -173065387 + MIR SINE MIR 50 218 -44 1954 113 0 4 chr3 44972118 44972383 -173064775 - AluSg SINE Alu -46 264 1 1710 97 9 0 chr3 44972383 44972611 -173064547 - AluSp SINE Alu -2 311 82 345 279 121 21 chr3 44972917 44973057 -173064101 - MIR3 SINE MIR -15 193 40 732 186 29 7 chr3 44973405 44973545 -173063613 + MLT1D LTR MaLR 363 505 0 979 226 23 14 chr3 44973725 44973942 -173063216 - MER20 DNA MER1_type 0 219 1 25 0 0 0 chr3 44974028 44974053 -173063105 + AT_rich Low_complexity Low_complexity 1 25 0 642 306 17 12 chr3 44974126 44974299 -173062859 - MER5A DNA MER1_type 0 189 16 7090 185 72 27 chr3 44974503 44974650 -173062508 - L1MC3 LINE L1 0 7785 7646 2382 146 23 32 chr3 44974650 44975082 -173062076 - MSTA LTR MaLR 0 428 1 7090 185 72 27 chr3 44975082 44976551 -173060607 - L1MC3 LINE L1 -139 7646 6095 1012 292 94 49 chr3 44976585 44976952 -173060206 - L1M4 LINE L1 -2689 3457 3108 2157 98 27 24 chr3 44976952 44977247 -173059911 - AluSq SINE Alu -17 296 1 1012 292 94 49 chr3 44977247 44977795 -173059363 - L1M4 LINE L1 -3038 3108 2446 263 246 43 0 chr3 44977797 44977866 -173059292 - HAL1 LINE L1 -1082 1425 1354 319 196 32 18 chr3 44977873 44977985 -173059173 - Alu SINE Alu 0 300 247 518 257 57 46 chr3 44977987 44978162 -173058996 - HAL1 LINE L1 -1215 1292 1116 211 282 39 48 chr3 44978218 44978321 -173058837 + L2 LINE L2 2907 3008 -264 290 292 128 53 chr3 44979183 44979426 -173057732 - MIR SINE MIR 0 262 2 12300 191 23 31 chr3 44979459 44985002 -173052156 - L1PB1 LINE L1 0 6867 1392 733 244 19 14 chr3 44984978 44985187 -173051971 - L1PB1 LINE L1 -6646 217 8 * 195 299 35 23 chr3 44985840 44985927 -173051231 + MIR SINE MIR 1 88 -174 372 300 62 0 chr3 44989653 44989783 -173047375 - MIR SINE MIR -81 181 44 633 256 130 10 chr3 44991188 44991395 -173045763 + LTR16A1 LTR ERVL 226 457 0 798 271 89 7 chr3 44992846 44993138 -173044020 + L1ME3A LINE L1 5847 6162 -8 1539 173 92 46 chr3 44993920 44994290 -173042868 - MLT1B LTR MaLR -2 388 2 197 246 0 53 chr3 44995160 44995217 -173041941 + MIR SINE MIR 91 144 -118 194 277 21 0 chr3 44995186 44995233 -173041925 + MIR3 SINE MIR 115 162 -46 * 298 304 94 72 chr3 44995308 44995489 -173041669 - MIR3 SINE MIR 0 262 78 36 62 0 0 chr3 44996933 44996997 -173040161 + AT_rich Low_complexity Low_complexity 1 64 0 535 302 42 90 chr3 44997354 44997811 -173039347 - LTR16A1 LTR ERVL -9 448 14 595 270 56 92 chr3 44997840 44997878 -173039280 - L2 LINE L2 -1 3312 3274 1326 180 31 13 chr3 44997878 44998195 -173038963 + MER33 DNA MER1_type 2 324 0 595 270 56 92 chr3 44998195 44998515 -173038643 - L2 LINE L2 -39 3274 2967 293 228 102 31 chr3 45000816 45000943 -173036215 + MIR SINE MIR 70 205 -57 238 279 0 0 chr3 45001222 45001290 -173035868 + L1ME LINE L1 5382 5449 -717 2186 115 0 7 chr3 45002141 45002437 -173034721 + AluSx SINE Alu 1 294 -18 1514 178 54 18 chr3 45003554 45003830 -173033328 + AluJo SINE Alu 1 286 -26 207 406 0 0 chr3 45005830 45005926 -173031232 + L2 LINE L2 3166 3261 -52 565 294 115 2 chr3 45006417 45006633 -173030525 + MIR SINE MIR 25 259 -3 23 0 0 0 chr3 45006676 45006699 -173030459 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 45007121 45007142 -173030016 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 45007534 45007559 -173029599 + (T)n Simple_repeat Simple_repeat 1 25 0 187 267 0 0 chr3 45007768 45007813 -173029345 - L2 LINE L2 -13 3259 3215 260 353 85 30 chr3 45007951 45008152 -173029006 + MIR SINE MIR 25 236 -26 33 85 0 0 chr3 45008910 45008992 -173028166 + AT_rich Low_complexity Low_complexity 1 82 0 1431 269 83 57 chr3 45009025 45010843 -173026315 + L1ME3A LINE L1 4233 6097 -73 26 30 0 0 chr3 45010876 45010909 -173026249 + AT_rich Low_complexity Low_complexity 1 33 0 327 201 122 31 chr3 45011072 45011189 -173025969 - L1MC/D LINE L1 -928 5500 5377 192 77 0 0 chr3 45011195 45011221 -173025937 + (TTA)n Simple_repeat Simple_repeat 2 27 0 278 256 23 70 chr3 45011272 45011401 -173025757 + MIR SINE MIR 71 193 -69 184 395 106 16 chr3 45011590 45012015 -173025143 + L2 LINE L2 2510 2972 -342 213 121 0 0 chr3 45012267 45012300 -173024858 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 731 87 8 0 chr3 45012452 45012578 -173024580 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 300 91 0 0 chr3 45014263 45014307 -173022851 + (CA)n Simple_repeat Simple_repeat 1 44 0 5371 252 63 33 chr3 45015405 45017920 -173019238 - L1MEc LINE L1 -1726 4489 1930 562 271 191 5 chr3 45018801 45019011 -173018147 + MIR SINE MIR 1 249 -13 228 135 0 0 chr3 45019086 45019123 -173018035 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 187 325 38 25 chr3 45019127 45019207 -173017951 - L2 LINE L2 -4 3268 3188 7450 30 1 6 chr3 45019466 45021024 -173016134 + L1PA5 LINE L1 4596 6147 -7 24 0 0 0 chr3 45021024 45021048 -173016110 + AT_rich Low_complexity Low_complexity 1 24 0 273 274 52 74 chr3 45022638 45022773 -173014385 - MIR SINE MIR -123 139 8 286 253 84 0 chr3 45022825 45022908 -173014250 + L2 LINE L2 3224 3313 0 441 239 64 0 chr3 45023199 45023308 -173013850 - LTR16A1 LTR ERVL -7 450 335 609 342 27 42 chr3 45023677 45024083 -173013075 - L2 LINE L2 -2 3311 2912 258 364 88 57 chr3 45024246 45024543 -173012615 - L2 LINE L2 -49 3223 2918 263 299 41 10 chr3 45024732 45024829 -173012329 + MER5A DNA MER1_type 1 100 -89 312 253 11 11 chr3 45025078 45025165 -173011993 - MIR SINE MIR -85 177 91 496 293 143 45 chr3 45025386 45025624 -173011534 + L1ME4a LINE L1 5381 5594 -527 891 198 35 0 chr3 45025624 45025796 -173011362 - MER45A DNA AcHobo 0 178 1 496 293 143 45 chr3 45025796 45026131 -173011027 + L1ME4a LINE L1 5594 6010 -111 3347 139 44 19 chr3 45026351 45026939 -173010219 + LTR26 LTR ERV1 1 603 0 8685 183 9 22 chr3 45027196 45029428 -173007730 + L1PA16 LINE L1 3287 5473 -693 2321 100 0 28 chr3 45029428 45029748 -173007410 + AluSx SINE Alu 2 312 0 8685 183 9 22 chr3 45029748 45030425 -173006733 + L1PA16 LINE L1 5473 6157 -9 5467 23 0 0 chr3 45030825 45031472 -173005686 - L1PA2 LINE L1 -1280 4866 4220 7822 17 0 0 chr3 45031472 45032767 -173004391 + L1PA2 LINE L1 4860 6154 -1 337 314 29 36 chr3 45032920 45033060 -173004098 + MIR SINE MIR 1 139 -123 306 311 79 45 chr3 45033302 45033569 -173003589 + L1MC4a LINE L1 3589 3864 -2282 236 172 17 0 chr3 45033874 45033932 -173003226 + CT-rich Low_complexity Low_complexity 3 61 0 599 315 63 28 chr3 45034139 45034786 -173002372 + L1MC4a LINE L1 5264 5933 -1875 2427 94 3 6 chr3 45035769 45036120 -173001038 + L1PA13 LINE L1 5814 6163 0 1831 156 12 22 chr3 45036637 45036957 -173000201 - MER2 DNA MER2_type -27 318 2 22 35 0 0 chr3 45037733 45037762 -172999396 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 45038285 45038306 -172998852 + (TA)n Simple_repeat Simple_repeat 1 21 0 1967 120 29 0 chr3 45038309 45038583 -172998575 - AluSp SINE Alu -31 282 1 38 81 0 0 chr3 45039803 45039890 -172997268 + AT_rich Low_complexity Low_complexity 1 87 0 441 249 197 42 chr3 45040612 45040780 -172996378 - HAL1 LINE L1 -807 1700 1491 1849 159 27 0 chr3 45040780 45041075 -172996083 - AluJb SINE Alu -9 303 1 441 249 197 42 chr3 45041075 45041119 -172996039 - HAL1 LINE L1 -1016 1491 1455 347 0 0 0 chr3 45041995 45042037 -172995121 - L1PA3 LINE L1 -5 6150 6109 16963 192 26 28 chr3 45042906 45047301 -172989857 + L1PA10 LINE L1 1 4538 -1923 6073 74 54 16 chr3 45047322 45048760 -172988398 + L1PA10 LINE L1 4993 6478 -5 225 282 12 35 chr3 45048995 45049080 -172988078 - L1ME LINE L1 -473 5648 5566 740 196 0 8 chr3 45049153 45049286 -172987872 - FLAM_A SINE Alu -1 132 1 245 289 13 13 chr3 45049629 45049705 -172987453 + MIR SINE MIR 78 153 -55 692 308 103 34 chr3 45049922 45050367 -172986791 + L2 LINE L2 2827 3302 -11 300 70 0 0 chr3 45052665 45052708 -172984450 + (CA)n Simple_repeat Simple_repeat 2 44 0 433 286 145 38 chr3 45053567 45054071 -172983087 + L1M4 LINE L1 4289 4846 -1300 30 0 0 0 chr3 45054158 45054188 -172982970 + AT_rich Low_complexity Low_complexity 1 30 0 2280 109 0 0 chr3 45054407 45054709 -172982449 + AluSg SINE Alu 1 302 -8 6586 85 17 3 chr3 45055150 45056935 -172980223 - L1PA11 LINE L1 0 6174 4379 5814 239 22 16 chr3 45056951 45058243 -172978915 - L1PA12 LINE L1 -6277 1304 6 2385 83 0 13 chr3 45058864 45059176 -172977982 - AluY SINE Alu -3 308 1 495 298 82 80 chr3 45059415 45059791 -172977367 + MLT2E LTR ERVL 252 628 0 337 333 92 30 chr3 45060188 45060623 -172976535 + L2 LINE L2 612 1073 -2241 2167 127 0 0 chr3 45061731 45062030 -172975128 - AluY SINE Alu -12 299 1 193 211 77 0 chr3 45062450 45062502 -172974656 + L2 LINE L2 2672 2727 -587 771 213 58 0 chr3 45063047 45063202 -172973956 + FRAM SINE Alu 1 161 -15 181 217 174 0 chr3 45063287 45063333 -172973825 + L2 LINE L2 3242 3295 -18 225 276 0 17 chr3 45064030 45064088 -172973070 - L2 LINE L2 -80 3192 3136 247 262 103 0 chr3 45064856 45064963 -172972195 + L1ME LINE L1 5696 5813 -308 29 60 0 0 chr3 45065202 45065252 -172971906 + AT_rich Low_complexity Low_complexity 1 50 0 916 258 64 39 chr3 45065627 45065910 -172971248 - MLT1H LTR MaLR -188 361 72 192 316 18 70 chr3 45066096 45066210 -172970948 + L2 LINE L2 2988 3095 -177 326 343 53 51 chr3 45066594 45066950 -172970208 - L1M4 LINE L1 -2632 3514 3158 311 313 33 71 chr3 45066972 45067183 -172969975 - L1ME3A LINE L1 -5 6165 5963 314 256 45 30 chr3 45067343 45067476 -172969682 - L1ME3A LINE L1 -1994 5814 5680 1488 209 29 85 chr3 45067492 45068019 -172969139 + Charlie4a DNA MER1_type 1 497 -11 1205 299 22 32 chr3 45068064 45068468 -172968690 - MLT1I LTR MaLR -4 405 6 425 277 59 28 chr3 45068469 45068782 -172968376 - L1ME3A LINE L1 -552 5618 5283 3103 247 69 38 chr3 45070407 45071491 -172965667 + L1MC/D LINE L1 264 1381 -5226 214 188 12 38 chr3 45071532 45071612 -172965546 + (TATAA)n Simple_repeat Simple_repeat 3 80 0 185 60 40 40 chr3 45071631 45071681 -172965477 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 477 249 110 20 chr3 45071691 45071936 -172965222 + L1MC/D LINE L1 1288 1554 -4872 1343 258 71 48 chr3 45071936 45071959 -172965199 + MLT1E2 LTR MaLR 3 24 -602 2094 124 138 5 chr3 45071959 45072337 -172964821 - MSTA LTR MaLR 0 428 1 1343 258 71 48 chr3 45072337 45072923 -172964235 + MLT1E2 LTR MaLR 24 626 0 260 258 21 31 chr3 45072925 45073022 -172964136 + HAL1 LINE L1 1516 1611 -896 * 2592 232 23 33 chr3 45072996 45073952 -172963206 + L1MC/D LINE L1 4581 5523 -746 1141 281 123 12 chr3 45073963 45074741 -172962417 + L1ME3A LINE L1 4027 4891 -1255 2579 256 39 24 chr3 45074924 45075786 -172961372 + L1ME3A LINE L1 5285 6159 -11 26 50 0 0 chr3 45077118 45077158 -172960000 + AT_rich Low_complexity Low_complexity 1 40 0 351 0 0 0 chr3 45077353 45077392 -172959766 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 411 302 73 71 chr3 45077413 45077959 -172959199 + L1ME3A LINE L1 2737 3283 -3143 302 167 83 0 chr3 45078013 45078097 -172959061 + L1ME3A LINE L1 4140 4230 -2196 1928 155 35 62 chr3 45078131 45078287 -172958871 + MLT1B LTR MaLR 1 160 -230 1238 188 63 84 chr3 45078287 45078728 -172958430 + MSTB1 LTR MaLR 1 432 0 1928 155 35 62 chr3 45078728 45078972 -172958186 + MLT1B LTR MaLR 160 390 0 668 324 71 36 chr3 45078981 45079787 -172957371 + L1ME3A LINE L1 4293 5126 -1300 2725 125 19 0 chr3 45080068 45080501 -172956657 + L1MA5A LINE L1 5857 6297 0 718 251 128 80 chr3 45080607 45081233 -172955925 + L1ME3A LINE L1 5573 6228 -222 233 266 0 0 chr3 45081690 45081754 -172955404 + L1MEc LINE L1 3992 4055 -2371 4973 188 28 31 chr3 45082154 45082460 -172954698 - L1MC3 LINE L1 -7 7778 7473 2260 89 3 10 chr3 45082460 45082764 -172954394 - AluSg SINE Alu -8 302 1 4973 188 28 31 chr3 45082764 45083533 -172953625 - L1MC3 LINE L1 -312 7473 6706 457 184 88 61 chr3 45083541 45083688 -172953470 - MER106A DNA MER1_type -85 151 1 460 258 135 26 chr3 45083998 45084227 -172952931 + L1ME2 LINE L1 5902 6155 -9 689 240 157 29 chr3 45084241 45084559 -172952599 + MLT2C1 LTR ERVL 5 394 -3 250 294 65 25 chr3 45085232 45085433 -172951725 + L1MEc LINE L1 5471 5679 -747 1173 170 71 53 chr3 45085740 45086065 -172951093 - MER33 DNA MER1_type 0 324 1 349 287 87 59 chr3 45086167 45086453 -172950705 - L1M4 LINE L1 -2791 3355 3062 252 337 0 12 chr3 45086588 45086674 -172950484 + CT-rich Low_complexity Low_complexity 1 85 0 348 300 25 50 chr3 45086679 45086839 -172950319 - HAL1 LINE L1 -1230 1277 1122 245 265 34 14 chr3 45087363 45087510 -172949648 + A-rich Low_complexity Low_complexity 2 151 0 34 28 0 56 chr3 45087633 45087704 -172949454 + AT_rich Low_complexity Low_complexity 1 67 0 2192 237 55 38 chr3 45087709 45087801 -172949357 - MER77 LTR ERV1 0 605 516 4335 72 9 2 chr3 45087801 45088371 -172948787 - L1PA7 LINE L1 -6 6148 5575 2192 237 55 38 chr3 45088371 45088865 -172948293 - MER77 LTR ERV1 -89 516 9 183 139 0 0 chr3 45088875 45088911 -172948247 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 340 359 60 0 chr3 45090117 45090234 -172946924 + MIR3 SINE MIR 33 156 -52 412 290 76 7 chr3 45090284 45090429 -172946729 - MIR SINE MIR -17 245 91 1731 192 51 13 chr3 45090784 45091147 -172946011 + MLT2B2 LTR ERVL 1 397 0 409 250 43 0 chr3 45091499 45091591 -172945567 + L2 LINE L2 3213 3308 -5 2906 102 51 2 chr3 45091681 45092113 -172945045 - MLT2A2 LTR ERVL 0 453 1 327 246 120 7 chr3 45092590 45092732 -172944426 - MER103 DNA DNA -8 158 1 255 335 128 23 chr3 45092776 45092994 -172944164 + MIR SINE MIR 20 260 -2 233 188 42 0 chr3 45093440 45093488 -172943670 + L1MC4 LINE L1 6653 6702 -1340 259 250 71 0 chr3 45093489 45093573 -172943585 + L1MC4 LINE L1 6614 6703 -1339 235 286 71 0 chr3 45093569 45093653 -172943505 - L1MC4 LINE L1 -1339 6703 6614 * 234 324 28 0 chr3 45093654 45093725 -172943433 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 240 286 71 0 chr3 45093725 45093809 -172943349 - L1MC4 LINE L1 -1339 6703 6614 244 255 0 82 chr3 45093811 45093909 -172943249 - L1MC4 LINE L1 -1339 6703 6614 * 268 311 0 0 chr3 45093857 45093947 -172943211 + L1MC4 LINE L1 6614 6703 -1339 210 250 0 0 chr3 45093947 45094003 -172943155 + (TATATG)n Simple_repeat Simple_repeat 6 61 0 288 206 0 0 chr3 45094003 45094066 -172943092 + L1MC4 LINE L1 6640 6702 -1340 298 253 23 0 chr3 45094067 45094154 -172943004 + L1MC4 LINE L1 6614 6702 -1340 239 247 35 0 chr3 45094126 45094211 -172942947 - L1MC4 LINE L1 -1340 6702 6615 * 419 194 10 0 chr3 45094217 45094315 -172942843 + (TA)n Simple_repeat Simple_repeat 2 100 0 226 211 0 0 chr3 45094315 45094367 -172942791 - L1MC4 LINE L1 -1339 6703 6652 366 23 0 0 chr3 45094525 45094568 -172942590 + (TG)n Simple_repeat Simple_repeat 2 44 0 1521 219 43 12 chr3 45094569 45094894 -172942264 + MER58B DNA MER1_type 7 341 0 676 279 50 57 chr3 45095811 45096267 -172940891 + LTR16A1 LTR ERVL 5 457 0 456 256 45 15 chr3 45097534 45097667 -172939491 + L1ME2 LINE L1 6001 6137 -27 21 0 0 0 chr3 45097728 45097749 -172939409 + AT_rich Low_complexity Low_complexity 1 21 0 451 204 194 0 chr3 45097872 45097980 -172939178 + FLAM_C SINE Alu 1 129 -14 1906 177 36 35 chr3 45098794 45099261 -172937897 - MLT2D LTR ERVL 0 414 2 554 210 40 0 chr3 45099767 45099891 -172937267 - LTR16A LTR ERVL 0 450 322 1974 179 10 28 chr3 45101494 45101891 -172935267 - MLT1B LTR MaLR 0 390 1 695 286 70 56 chr3 45102465 45102947 -172934211 - MLT1J LTR MaLR 0 511 23 2417 215 16 33 chr3 45102947 45103372 -172933786 + MER67A LTR ERV1 1 417 -126 1294 229 27 56 chr3 45103372 45103748 -172933410 + MLT1A1 LTR MaLR 1 365 0 2417 215 16 33 chr3 45103748 45103870 -172933288 + MER67A LTR ERV1 417 539 -4 1250 178 91 86 chr3 45104383 45104466 -172932692 + MLT1B LTR MaLR 6 87 -303 2388 126 62 7 chr3 45104466 45104872 -172932286 - MSTA LTR MaLR 0 428 1 1250 178 91 86 chr3 45104872 45105171 -172931987 + MLT1B LTR MaLR 87 390 0 719 207 7 14 chr3 45105343 45105483 -172931675 - MER20 DNA MER1_type -1 218 80 521 309 106 19 chr3 45105483 45105690 -172931468 + L2 LINE L2 2864 3088 -225 343 270 22 0 chr3 45105696 45105785 -172931373 - MER20 DNA MER1_type -127 92 2 455 311 88 5 chr3 45106604 45106797 -172930361 - MIR SINE MIR -53 209 1 1610 246 105 22 chr3 45107161 45108077 -172929081 - L1M4b LINE L1 -3547 3410 2475 22 56 0 0 chr3 45108122 45108158 -172929000 + AT_rich Low_complexity Low_complexity 1 36 0 2768 224 20 65 chr3 45108264 45109094 -172928064 - L1M4b LINE L1 -4588 2371 1602 2111 136 0 0 chr3 45109094 45109396 -172927762 - AluSg SINE Alu -2 308 7 2768 224 20 65 chr3 45109396 45109857 -172927301 - L1M4b LINE L1 -5357 1602 1122 1022 301 98 21 chr3 45109867 45110116 -172927042 + L2 LINE L2 2896 3187 -126 297 109 0 0 chr3 45110116 45110162 -172926996 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1022 301 98 21 chr3 45110162 45110298 -172926860 + L2 LINE L2 3187 3311 -2 247 336 66 40 chr3 45110724 45111043 -172926115 + L2 LINE L2 2716 3059 -213 804 243 25 23 chr3 45111189 45111447 -172925711 - MLT1J2 LTR MaLR -177 269 1 205 259 259 12 chr3 45111537 45111622 -172925536 + L2 LINE L2 3151 3256 -16 250 98 39 20 chr3 45111633 45111684 -172925474 - MER116 DNA Mariner -13 67 16 254 383 61 0 chr3 45112001 45112116 -172925042 - L2 LINE L2 -8 3264 3143 239 330 107 0 chr3 45112129 45112232 -172924926 - L2 LINE L2 -607 2707 2594 221 261 0 0 chr3 45113548 45113594 -172923564 - MIR SINE MIR -66 142 97 37093 41 4 3 chr3 45113891 45120018 -172917140 + L1PA4 LINE L1 11 6147 -8 279 48 24 0 chr3 45120209 45120251 -172916907 - MADE1 DNA Mariner -2 78 36 1385 301 71 4 chr3 45120892 45121400 -172915758 - ERVL LTR ERVL -1149 4615 4074 774 164 0 0 chr3 45121889 45122035 -172915123 + GA-rich Low_complexity Low_complexity 3 148 0 2322 104 0 0 chr3 45122319 45122617 -172914541 + AluSc SINE Alu 1 298 -11 304 329 0 0 chr3 45124539 45124624 -172912534 - MIR SINE MIR -13 249 165 210 319 66 22 chr3 45125553 45125644 -172911514 - L2 LINE L2 -9 3263 3169 190 367 44 11 chr3 45125867 45125957 -172911201 + MIR SINE MIR 1 93 -169 471 274 114 10 chr3 45126044 45126245 -172910913 + MLT1H LTR MaLR 70 291 -258 247 291 55 8 chr3 45126291 45126418 -172910740 + MLT1H LTR MaLR 454 586 -4 487 311 93 0 chr3 45126426 45126587 -172910571 + MIR SINE MIR 85 260 -2 420 301 62 14 chr3 45127826 45127972 -172909186 + MIR SINE MIR 73 225 -37 1837 144 100 3 chr3 45127973 45128293 -172908865 - MER83B LTR ERV1 0 378 28 2218 159 0 3 chr3 45128303 45128694 -172908464 - MER83B-int LTR ERV1 -11 6459 4527 397 319 56 32 chr3 45128776 45129248 -172907910 - MER83B-int LTR ERV1 -285 7107 6542 547 294 61 0 chr3 45130211 45130456 -172906702 - MER83B-int LTR ERV1 -1957 2328 2069 502 318 46 30 chr3 45130887 45131402 -172905756 - MER83B-int LTR ERV1 -2070 6556 4941 2123 306 31 29 chr3 45131868 45133401 -172903757 - MER83B-int LTR ERV1 -1029 3925 2960 562 194 68 0 chr3 45133401 45133536 -172903622 - AluSg/x SINE Alu 0 313 172 328 324 37 62 chr3 45133747 45134201 -172902957 - MER83B-int LTR ERV1 -2188 2766 2324 261 298 11 0 chr3 45134336 45134430 -172902728 - MER83B-int LTR ERV1 -2772 2182 2088 1572 313 45 8 chr3 45134649 45135419 -172901739 - MER83B-int LTR ERV1 -3059 1895 1097 2697 291 63 27 chr3 45135545 45136733 -172900425 - MER83B-int LTR ERV1 -3304 981 12 1938 154 34 47 chr3 45136733 45137116 -172900042 - MER83B LTR ERV1 0 378 1 2297 174 24 2 chr3 45137326 45137740 -172899418 + MSTC LTR MaLR 6 428 0 23 92 0 0 chr3 45138839 45138904 -172898254 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr3 45139249 45139277 -172897881 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 45139331 45139359 -172897799 + AT_rich Low_complexity Low_complexity 1 28 0 251 358 67 17 chr3 45139398 45139518 -172897640 + MIR3 SINE MIR 81 206 -2 573 24 36 0 chr3 45139848 45139931 -172897227 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 1453 158 42 115 chr3 45140080 45140650 -172896508 - L1M4 LINE L1 -5111 1744 1219 686 216 36 54 chr3 45140931 45141153 -172896005 - L1M4 LINE L1 -5710 1149 932 327 152 15 15 chr3 45141610 45141676 -172895482 + L1PB1 LINE L1 129 194 -6669 9875 153 30 27 chr3 45141676 45143409 -172893749 + L1PB1 LINE L1 995 2720 -4142 2096 137 3 10 chr3 45143409 45143715 -172893443 + AluSx SINE Alu 5 308 -4 9875 153 30 27 chr3 45143715 45146088 -172891070 + L1PB1 LINE L1 2720 5278 -1584 1754 118 115 13 chr3 45146088 45146399 -172890759 + L1PB1 LINE L1 6521 6865 -2 27 0 0 0 chr3 45146399 45146426 -172890732 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 45146762 45146798 -172890360 + AT_rich Low_complexity Low_complexity 1 36 0 231 169 12 48 chr3 45147755 45147838 -172889320 + (TA)n Simple_repeat Simple_repeat 2 81 0 352 75 19 0 chr3 45147847 45147900 -172889258 + MLT2B1 LTR ERVL 467 520 0 3748 166 53 42 chr3 45147900 45148408 -172888750 - L1MC3 LINE L1 -217 7848 7326 195 100 0 0 chr3 45148408 45148438 -172888720 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3748 166 53 42 chr3 45148438 45148778 -172888380 - L1MC3 LINE L1 -739 7326 6991 3739 215 28 10 chr3 45148782 45150436 -172886722 - L1MC3 LINE L1 -744 5682 4805 286 211 0 0 chr3 45150437 45150489 -172886669 - L1MC3 LINE L1 -6355 71 20 1642 208 0 0 chr3 45150811 45151099 -172886059 - AluJo SINE Alu -24 288 1 1990 168 112 11 chr3 45151293 45151739 -172885419 - L1MD1 LINE L1 -14 6228 5738 1438 184 52 96 chr3 45151737 45151804 -172885354 - L1MDa LINE L1 -4639 1901 1833 * 6578 169 27 56 chr3 45151804 45153509 -172883649 + L1PA15 LINE L1 4077 5776 -389 2363 100 7 0 chr3 45153509 45153819 -172883339 + AluSx SINE Alu 1 312 0 6578 169 27 56 chr3 45153819 45154196 -172882962 + L1PA15 LINE L1 5776 6162 -3 1438 184 52 96 chr3 45154196 45154730 -172882428 - L1MDa LINE L1 -4707 1833 1327 1588 172 114 65 chr3 45154736 45155167 -172881991 + LTR47A LTR ERVL 1 452 0 344 304 54 20 chr3 45155182 45155330 -172881828 + LTR47A-int LTR ERVL 16 168 -5175 205 182 0 0 chr3 45155568 45155601 -172881557 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 2068 238 29 59 chr3 45155671 45156318 -172880840 + LTR49-int LTR ERV1 1851 2478 -3853 10495 171 57 43 chr3 45156341 45158196 -172878962 + LTR49-int LTR ERV1 2657 4485 -1846 2473 41 7 0 chr3 45158196 45158491 -172878667 + AluY SINE Alu 2 298 -13 10495 171 57 43 chr3 45158491 45159051 -172878107 + LTR49-int LTR ERV1 4485 4759 -1572 4278 117 8 3 chr3 45159051 45159660 -172877498 - LTR9 LTR ERV1 0 612 1 10495 171 57 43 chr3 45159660 45160442 -172876716 + LTR49-int LTR ERV1 4759 5529 -802 2311 225 46 39 chr3 45160442 45160541 -172876617 + MER72 LTR ERV1 1 98 -624 2157 118 3 19 chr3 45160541 45160855 -172876303 + AluSx SINE Alu 1 309 -3 2311 225 46 39 chr3 45160855 45161453 -172875705 + MER72 LTR ERV1 98 703 -19 944 221 99 97 chr3 45161472 45161956 -172875202 + LTR49-int LTR ERV1 5591 6075 -683 1373 181 168 24 chr3 45161968 45162349 -172874809 + LTR47A LTR ERVL 16 451 -1 651 156 18 12 chr3 45162350 45162517 -172874641 - L1MDa LINE L1 -5214 1326 1159 1016 147 0 13 chr3 45162543 45162700 -172874458 - AluSp SINE Alu -25 288 134 1057 190 53 23 chr3 45162700 45162963 -172874195 - L1MDa LINE L1 -5362 1178 908 2282 217 76 39 chr3 45162963 45163584 -172873574 - L1MDa LINE L1 -5888 652 9 446 232 68 64 chr3 45163672 45163888 -172873270 - L1ME3A LINE L1 -92 6070 5856 284 243 14 0 chr3 45163894 45163968 -172873190 + L1M3 LINE L1 5366 5440 -724 567 235 13 19 chr3 45164034 45164206 -172872952 + L1M3 LINE L1 5669 5848 -332 2258 131 0 0 chr3 45164295 45164607 -172872551 + AluSx SINE Alu 1 312 0 2054 132 0 3 chr3 45165112 45165399 -172871759 - AluSx SINE Alu -26 286 1 21 0 0 0 chr3 45165725 45165746 -172871412 + AT_rich Low_complexity Low_complexity 1 21 0 334 328 52 29 chr3 45167212 45167386 -172869772 + MIR SINE MIR 17 194 -68 318 320 119 14 chr3 45167408 45167686 -172869472 + L1MC4a LINE L1 5728 6034 -1774 295 344 96 6 chr3 45167873 45168030 -172869128 + MIR3 SINE MIR 30 200 -8 429 261 163 7 chr3 45168034 45168187 -172868971 - L2 LINE L2 0 3313 3137 208 333 118 7 chr3 45168191 45168326 -172868832 - L2 LINE L2 -254 3018 2869 522 260 28 4 chr3 45168652 45168800 -172868358 - MIR SINE MIR -63 145 39 2314 82 0 3 chr3 45169335 45169650 -172867508 + AluSc SINE Alu 1 309 0 191 314 137 24 chr3 45169932 45170056 -172867102 + MIR SINE MIR 125 262 0 283 386 59 25 chr3 45171028 45171264 -172865894 - L2 LINE L2 -43 3229 2986 440 299 30 8 chr3 45171753 45171887 -172865271 + L2 LINE L2 3167 3303 -10 624 172 234 7 chr3 45172161 45172306 -172864852 - MER45A DNA AcHobo 0 178 1 646 299 69 10 chr3 45172630 45172834 -172864324 + MIR SINE MIR 24 239 -23 186 295 101 86 chr3 45172885 45173024 -172864134 + MIR3 SINE MIR 12 152 -56 25 0 0 0 chr3 45173320 45173345 -172863813 + GC_rich Low_complexity Low_complexity 1 25 0 680 160 0 0 chr3 45173961 45174086 -172863072 + L1PA11 LINE L1 6030 6154 -20 222 280 204 19 chr3 45176242 45176399 -172860759 + MIR SINE MIR 67 252 -10 231 284 40 28 chr3 45177370 45177546 -172859612 - L1ME4a LINE L1 0 6121 5944 663 184 18 99 chr3 45177697 45177969 -172859189 - L1MC5 LINE L1 -44 7917 7668 385 172 0 0 chr3 45178178 45178242 -172858916 - MIR SINE MIR -76 132 69 230 191 21 0 chr3 45179242 45179289 -172857869 - L2 LINE L2 -1 3312 3265 350 277 188 0 chr3 45179366 45179467 -172857691 + MER5B DNA MER1_type 12 131 -47 319 310 71 13 chr3 45179597 45179836 -172857322 - L1ME4a LINE L1 -314 5807 5555 2795 231 76 18 chr3 45179856 45181015 -172856143 - L1ME3A LINE L1 -5 6148 4928 877 264 44 22 chr3 45181020 45181338 -172855820 - L1ME3A LINE L1 -1273 4856 4532 361 313 63 71 chr3 45181339 45181607 -172855551 - L1ME3A LINE L1 -5488 631 366 4380 174 45 10 chr3 45181657 45182530 -172854628 - L1MB3 LINE L1 0 6183 5281 866 304 120 53 chr3 45182530 45183539 -172853619 - L1ME4a LINE L1 -633 5488 4395 1915 170 55 3 chr3 45183539 45183886 -172853272 - MLT1A1 LTR MaLR 0 365 1 866 304 120 53 chr3 45183886 45184000 -172853158 - L1ME4a LINE L1 -1726 4395 4290 390 284 108 36 chr3 45184036 45184258 -172852900 + MIR SINE MIR 1 238 -24 519 290 35 76 chr3 45184683 45185079 -172852079 - L1ME4a LINE L1 -2144 4002 3623 293 336 78 46 chr3 45185494 45185866 -172851292 + L2 LINE L2 1958 2341 -973 1820 293 141 33 chr3 45186386 45186692 -172850466 + L2 LINE L2 38 310 -3004 1737 183 41 0 chr3 45186692 45186863 -172850295 - AluJo SINE Alu -10 302 113 318 50 0 0 chr3 45186863 45186903 -172850255 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1737 183 41 0 chr3 45186903 45187021 -172850137 - AluJo SINE Alu -199 113 1 1820 293 141 33 chr3 45187021 45187734 -172849424 + L2 LINE L2 310 1167 -2147 692 315 54 84 chr3 45187748 45187862 -172849296 - L2 LINE L2 -129 3184 3068 1439 202 30 35 chr3 45187862 45188229 -172848929 + MLT1A1 LTR MaLR 1 365 0 692 315 54 84 chr3 45188229 45188501 -172848657 - L2 LINE L2 -245 3068 2789 1056 184 19 5 chr3 45188501 45188707 -172848451 - MER3 DNA MER1_type 0 209 1 692 315 54 84 chr3 45188707 45188969 -172848189 - L2 LINE L2 -524 2789 2559 1926 129 50 0 chr3 45188969 45189247 -172847911 + AluSx SINE Alu 1 292 -20 692 315 54 84 chr3 45189247 45189356 -172847802 - L2 LINE L2 -754 2559 2448 201 39 0 0 chr3 45189373 45189399 -172847759 + (TA)n Simple_repeat Simple_repeat 2 27 0 30 0 0 0 chr3 45190686 45190716 -172846442 + AT_rich Low_complexity Low_complexity 1 30 0 648 26 0 0 chr3 45192647 45192725 -172844433 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1088 92 0 27 chr3 45192725 45192769 -172844389 + (GGAA)n Simple_repeat Simple_repeat 1 222 0 1088 92 0 27 chr3 45192769 45192954 -172844204 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 609 272 142 42 chr3 45193229 45193637 -172843521 - LTR16A1 LTR ERVL -8 449 1 197 119 24 0 chr3 45194568 45194610 -172842548 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 298 284 11 11 chr3 45194739 45194834 -172842324 - MIR3 SINE MIR -31 177 83 872 222 23 6 chr3 45194934 45195110 -172842048 - MER5A DNA MER1_type -10 179 1 640 217 29 29 chr3 45196027 45196202 -172840956 - MER45A DNA AcHobo 0 178 4 304 291 95 74 chr3 45196286 45196434 -172840724 - MIR3 SINE MIR -28 180 30 189 0 0 0 chr3 45196435 45196456 -172840702 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 283 270 22 11 chr3 45196643 45196732 -172840426 + GA-rich Low_complexity Low_complexity 1 90 0 331 364 0 14 chr3 45196737 45196880 -172840278 - MIR SINE MIR -31 231 91 223 242 30 0 chr3 45197752 45197818 -172839340 + T-rich Low_complexity Low_complexity 3 70 0 26 30 0 0 chr3 45197823 45197856 -172839302 + AT_rich Low_complexity Low_complexity 1 33 0 381 251 44 44 chr3 45198409 45198660 -172838498 + L1ME4a LINE L1 4394 4644 -1502 605 273 12 0 chr3 45198682 45198843 -172838315 + MIR SINE MIR 94 256 -6 328 259 76 84 chr3 45198860 45199203 -172837955 + L1ME4a LINE L1 5669 6008 -113 22 0 0 0 chr3 45199228 45199250 -172837908 + AT_rich Low_complexity Low_complexity 1 22 0 481 115 26 0 chr3 45199285 45199363 -172837795 + MADE1 DNA Mariner 1 80 0 1727 156 7 17 chr3 45200078 45200367 -172836791 - AluJo SINE Alu -15 297 12 833 278 68 7 chr3 45200561 45200842 -172836316 - LTR16A LTR ERVL -26 424 127 1023 236 18 0 chr3 45200981 45201201 -172835957 + MER58A DNA MER1_type 1 224 0 560 298 58 11 chr3 45201295 45201483 -172835675 + MIR SINE MIR 47 243 -19 370 231 58 29 chr3 45201978 45202081 -172835077 - MLT1J2 LTR MaLR 0 450 345 1335 243 62 71 chr3 45202081 45202616 -172834542 - MLT1E LTR MaLR 0 593 64 785 261 112 30 chr3 45202750 45203202 -172833956 + MLT1L LTR MaLR 7 540 -75 235 287 23 11 chr3 45204701 45204788 -172832370 - MIR SINE MIR -5 257 170 1030 260 177 40 chr3 45205292 45205845 -172831313 + L2 LINE L2 2304 2932 -382 315 277 50 50 chr3 45206132 45206251 -172830907 + MIR SINE MIR 24 142 -66 435 309 59 77 chr3 45206355 45206760 -172830398 - MLT1J LTR MaLR 0 511 114 244 264 35 49 chr3 45207078 45207222 -172829936 - L1M4 LINE L1 -1315 4831 4690 20778 70 21 0 chr3 45207274 45210118 -172827040 - L1P LINE L1 -3239 2907 3 24 32 0 0 chr3 45210283 45210314 -172826844 + AT_rich Low_complexity Low_complexity 1 31 0 341 294 99 28 chr3 45210332 45210543 -172826615 - L1M4 LINE L1 -1386 4760 4535 1382 190 4 12 chr3 45210544 45210797 -172826361 + AluJo SINE Alu 1 251 -61 207 88 0 0 chr3 45211794 45211828 -172825330 + (CA)n Simple_repeat Simple_repeat 2 35 0 615 297 110 67 chr3 45211898 45213131 -172824027 - L1M4 LINE L1 -2322 3824 2477 2328 89 3 0 chr3 45213131 45213434 -172823724 + AluSp SINE Alu 1 304 -9 615 297 110 67 chr3 45213434 45213602 -172823556 - L1M4 LINE L1 -3669 2477 2318 1088 222 55 18 chr3 45213729 45214273 -172822885 - LTR48B LTR ERV1 0 644 1 357 236 89 16 chr3 45214518 45214641 -172822517 + MIR SINE MIR 124 255 -7 2256 133 0 3 chr3 45214757 45215096 -172822062 + MER1B DNA MER1_type 1 338 -1 29 28 0 0 chr3 45216627 45216663 -172820495 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr3 45216812 45216849 -172820309 + AT_rich Low_complexity Low_complexity 1 37 0 238 214 18 0 chr3 45217209 45217265 -172819893 + L1ME LINE L1 5670 5726 -395 432 323 42 65 chr3 45217265 45217723 -172819435 - MLT1J2 LTR MaLR 0 450 4 199 244 150 31 chr3 45218368 45218495 -172818663 + L2 LINE L2 3167 3308 -5 2664 202 45 93 chr3 45218744 45219642 -172817516 + L1MC4 LINE L1 6588 7441 -601 186 221 105 74 chr3 45221040 45221135 -172816023 + L2 LINE L2 3199 3296 -17 581 231 6 46 chr3 45221273 45221446 -172815712 - L2 LINE L2 0 3313 3148 1295 222 30 132 chr3 45221449 45222162 -172814996 + L1MC4 LINE L1 7403 8042 0 1114 250 88 43 chr3 45222224 45222864 -172814294 - L2 LINE L2 -257 3056 2378 271 340 94 70 chr3 45223785 45224114 -172813044 - L2 LINE L2 0 3272 2936 2380 149 57 3 chr3 45224282 45224652 -172812506 - MLT1B LTR MaLR 0 390 1 323 302 111 60 chr3 45224892 45225144 -172812014 - L1M2a LINE L1 -5899 1269 1005 698 288 24 18 chr3 45225785 45226005 -172811153 - MIR SINE MIR -33 229 13 2295 104 0 3 chr3 45226061 45226359 -172810799 + AluSx SINE Alu 1 297 -15 651 265 22 16 chr3 45226422 45226607 -172810551 + MIR SINE MIR 70 255 -7 360 305 42 0 chr3 45227340 45227458 -172809700 - MIR3 SINE MIR -21 187 65 391 252 143 8 chr3 45228639 45228758 -172808400 + MIR SINE MIR 18 152 -110 * 2644 273 224 29 chr3 45228756 45230399 -172806759 + L2 LINE L2 1233 3195 -118 8049 26 2 6 chr3 45230403 45231434 -172805724 + L1PA3 LINE L1 5128 6155 0 25 0 0 0 chr3 45231446 45231471 -172805687 + AT_rich Low_complexity Low_complexity 1 25 0 217 209 0 23 chr3 45231524 45231567 -172805591 + MIR SINE MIR 26 67 -195 260 298 105 42 chr3 45231763 45231954 -172805204 + L1M4 LINE L1 3622 3824 -2322 3026 251 84 71 chr3 45232140 45233601 -172803557 + L2 LINE L2 1847 3309 -4 231 338 31 25 chr3 45233833 45233993 -172803165 + HAL1b LINE L1 1187 1347 -1 718 152 13 32 chr3 45234040 45234198 -172802960 - L1 LINE L1 -1464 4682 4528 939 128 53 58 chr3 45234246 45234434 -172802724 - MER20 DNA MER1_type -3 216 30 567 130 57 130 chr3 45234436 45234628 -172802530 - MER53 DNA DNA 0 189 12 247 360 0 0 chr3 45234748 45234834 -172802324 - MIR SINE MIR -157 105 20 383 266 81 8 chr3 45234971 45235095 -172802063 - MIR SINE MIR -93 169 37 255 319 0 69 chr3 45235541 45235657 -172801501 + L2 LINE L2 2992 3099 -173 587 237 151 7 chr3 45235947 45236099 -172801059 + MER5A DNA MER1_type 9 182 -7 473 291 46 13 chr3 45236286 45236437 -172800721 - MIR3 SINE MIR -48 160 5 282 264 91 33 chr3 45237546 45237667 -172799491 - MIR SINE MIR -50 212 85 214 318 45 11 chr3 45238498 45238586 -172798572 - MIR SINE MIR -63 199 109 210 143 0 0 chr3 45238863 45238898 -172798260 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr3 45239159 45239187 -172797971 + (CA)n Simple_repeat Simple_repeat 2 29 0 4062 113 143 140 chr3 45240396 45241785 -172795373 - pTR5 LTR ERV1 0 2438 79 196 349 0 0 chr3 45242204 45242270 -172794888 + L2 LINE L2 3205 3270 -2 251 280 32 80 chr3 45242385 45242510 -172794648 - L2 LINE L2 0 3313 3195 1095 130 0 0 chr3 45243165 45243334 -172793824 + L1MA4 LINE L1 6131 6299 -1 2036 115 4 4 chr3 45244123 45244401 -172792757 + AluSx SINE Alu 1 278 -34 251 194 81 32 chr3 45245704 45245766 -172791392 + MER103 DNA DNA 82 146 -20 1095 158 0 12 chr3 45245819 45245983 -172791175 - FRAM SINE Alu -21 155 1 570 229 9 0 chr3 45246043 45246148 -172791010 - FLAM_A SINE Alu -32 110 5 437 285 145 0 chr3 45246173 45246359 -172790799 - L3 LINE CR1 -191 1386 1174 2213 104 3 0 chr3 45246428 45246791 -172790367 + AluSx SINE Alu 1 364 0 181 250 154 0 chr3 45246965 45247017 -172790141 + L3 LINE CR1 1081 1140 -437 338 0 24 0 chr3 45247263 45247305 -172789853 + (TG)n Simple_repeat Simple_repeat 2 44 0 1067 205 135 46 chr3 45247624 45247994 -172789164 + LTR16A1 LTR ERVL 55 457 0 214 364 0 11 chr3 45249416 45249504 -172787654 + CT-rich Low_complexity Low_complexity 5 91 0 297 188 31 0 chr3 45249935 45249999 -172787159 + AluSp/q SINE Alu 236 301 -2 320 261 36 27 chr3 45250285 45250396 -172786762 - MIR SINE MIR -39 223 112 1704 191 29 29 chr3 45251825 45252202 -172784956 - MER74C LTR ERVL -83 377 1 2330 102 0 0 chr3 45252212 45252516 -172784642 + AluSg SINE Alu 1 304 -6 416 250 86 0 chr3 45252556 45252672 -172784486 + MER117 DNA MER1_type 16 141 -56 312 257 104 49 chr3 45252973 45253117 -172784041 + L2 LINE L2 3159 3310 -3 1101 246 54 54 chr3 45254112 45254462 -172782696 + MLT1H LTR MaLR 1 350 -199 293 264 57 36 chr3 45255422 45255615 -172781543 + HAL1 LINE L1 1114 1310 -1197 198 103 0 0 chr3 45255735 45255764 -172781394 + (CA)n Simple_repeat Simple_repeat 2 30 0 2199 112 0 0 chr3 45256089 45256383 -172780775 + AluSc SINE Alu 1 294 -15 361 277 0 0 chr3 45256936 45257030 -172780128 - MARNA DNA Mariner -44 542 449 2053 89 0 0 chr3 45257890 45258147 -172779011 + AluSc SINE Alu 1 257 -52 553 294 32 18 chr3 45258408 45258626 -172778532 + MARNA DNA Mariner 143 363 -223 2451 89 0 6 chr3 45258634 45258949 -172778209 - AluSp SINE Alu 0 313 1 355 266 63 35 chr3 45260996 45261139 -172776019 - MIR SINE MIR -110 152 6 234 0 0 0 chr3 45261528 45261554 -172775604 + (T)n Simple_repeat Simple_repeat 1 26 0 870 78 0 26 chr3 45261911 45262026 -172775132 - L1PA15 LINE L1 -15 6150 6039 345 284 158 0 chr3 45262225 45262352 -172774806 + MIR SINE MIR 81 227 -35 6943 107 17 18 chr3 45262554 45263661 -172773497 - L1MA5A LINE L1 0 6297 5189 256 57 0 0 chr3 45263838 45263873 -172773285 - L1MA5A LINE L1 -963 5183 5149 567 0 0 0 chr3 45264339 45264402 -172772756 + (CA)n Simple_repeat Simple_repeat 2 64 0 640 322 57 4 chr3 45265343 45265570 -172771588 - LTR16A LTR ERVL -40 410 172 556 240 10 78 chr3 45266128 45266332 -172770826 - MLT1H LTR MaLR -329 220 31 1357 247 131 14 chr3 45267258 45267740 -172769418 + MLT1H LTR MaLR 12 549 0 273 218 0 0 chr3 45267771 45267826 -172769332 + MLT1I LTR MaLR 54 108 -301 236 234 0 31 chr3 45268066 45268130 -172769028 + MLT1I LTR MaLR 348 409 0 375 265 110 55 chr3 45268701 45268901 -172768257 - MIR SINE MIR -39 223 13 1952 86 31 0 chr3 45269772 45270027 -172767131 + AluSp SINE Alu 1 263 -50 315 0 0 0 chr3 45270036 45270071 -172767087 + (TAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr3 45270193 45270217 -172766941 + AT_rich Low_complexity Low_complexity 1 24 0 427 16 16 31 chr3 45270218 45270282 -172766876 - L1PA3 LINE L1 -6 6149 6087 2768 77 29 0 chr3 45270483 45270859 -172766299 - L1PA10 LINE L1 -6 6162 5776 415 239 103 42 chr3 45270859 45271239 -172765919 - L1MCa LINE L1 -3445 2684 2282 415 235 79 70 chr3 45271324 45271612 -172765546 - L1MCa LINE L1 -3862 2267 1945 323 291 99 26 chr3 45271833 45272176 -172764982 - L1MCa LINE L1 -4580 1730 1363 587 295 57 56 chr3 45272295 45272331 -172764827 - L1MCa LINE L1 -4931 1188 1154 1862 177 3 7 chr3 45272331 45272636 -172764522 - AluJb SINE Alu -6 306 3 587 295 57 56 chr3 45272636 45273226 -172763932 - L1MCa LINE L1 -4965 1154 561 332 188 0 12 chr3 45273316 45273396 -172763762 + CT-rich Low_complexity Low_complexity 2 80 0 248 314 0 57 chr3 45273660 45273835 -172763323 - L1MCa LINE L1 -5949 170 6 192 200 50 0 chr3 45275053 45275093 -172762065 + MIR SINE MIR 107 148 -114 220 171 29 114 chr3 45275108 45275178 -172761980 + L3 LINE CR1 1507 1570 -7 358 260 52 10 chr3 45275194 45275290 -172761868 - MER5A DNA MER1_type -77 112 13 1011 271 44 39 chr3 45275500 45275884 -172761274 - L2 LINE L2 -729 2585 2200 430 308 23 0 chr3 45275873 45276006 -172761152 - MIR SINE MIR -56 206 71 * 2706 23 0 7 chr3 45276931 45277241 -172759917 - AluY SINE Alu -3 308 1 24 32 0 0 chr3 45277325 45277356 -172759802 + AT_rich Low_complexity Low_complexity 1 31 0 195 42 0 0 chr3 45277610 45277634 -172759524 + (TA)n Simple_repeat Simple_repeat 1 24 0 222 195 0 0 chr3 45278495 45278536 -172758622 + (CAA)n Simple_repeat Simple_repeat 3 43 0 700 267 106 17 chr3 45278544 45278780 -172758378 - MIR SINE MIR -3 259 3 390 244 104 0 chr3 45278829 45278944 -172758214 - MER63 DNA MER1_type -81 755 3 324 0 0 0 chr3 45279043 45279079 -172758079 + (TA)n Simple_repeat Simple_repeat 2 37 0 1569 183 37 0 chr3 45279079 45279379 -172757779 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 45279387 45279411 -172757747 + AT_rich Low_complexity Low_complexity 1 24 0 908 194 21 31 chr3 45281049 45281240 -172755918 - MER5A DNA MER1_type 0 189 1 217 289 26 40 chr3 45281359 45281435 -172755723 - MER5B DNA MER1_type -103 75 1 271 360 39 26 chr3 45281811 45281964 -172755194 - L2 LINE L2 -6 3266 3112 181 335 159 28 chr3 45282193 45282375 -172754783 - L2 LINE L2 -527 2787 2582 227 267 108 51 chr3 45282509 45282704 -172754454 - L2 LINE L2 -1056 2258 2053 726 203 0 0 chr3 45282879 45283002 -172754156 + FLAM_A SINE Alu 1 123 -10 204 238 48 0 chr3 45283043 45283085 -172754073 - L2 LINE L2 -19 3294 3251 233 288 24 24 chr3 45283790 45283915 -172753243 + (CCTA)n Simple_repeat Simple_repeat 4 128 0 315 300 27 18 chr3 45285685 45285795 -172751363 - MIR3 SINE MIR -94 114 4 494 276 103 61 chr3 45286949 45287157 -172750001 - L3 LINE CR1 -242 1335 1108 1735 173 14 0 chr3 45287157 45287440 -172749718 - AluJo SINE Alu -25 287 1 494 276 103 61 chr3 45287440 45287542 -172749616 - L3 LINE CR1 -469 1108 1012 359 256 23 0 chr3 45287648 45287734 -172749424 + MER81 DNA DNA 1 88 -26 348 182 61 0 chr3 45287728 45287794 -172749364 + MER81 DNA DNA 44 113 -1 * 568 325 98 27 chr3 45289629 45290272 -172746886 + L2 LINE L2 2587 3270 -43 265 286 48 29 chr3 45290363 45290468 -172746690 - MIR3 SINE MIR -13 195 89 22 35 0 0 chr3 45291009 45291038 -172746120 + AT_rich Low_complexity Low_complexity 1 29 0 259 245 19 88 chr3 45291601 45291760 -172745398 + HAL1 LINE L1 50 197 -2310 886 244 9 55 chr3 45291770 45292098 -172745060 + HAL1 LINE L1 1498 1810 -697 722 180 0 43 chr3 45292182 45292321 -172744837 + AluSq/x SINE Alu 1 133 -180 1919 141 25 0 chr3 45292323 45292625 -172744533 + AluSx SINE Alu 1 309 0 386 320 104 4 chr3 45292632 45292882 -172744276 + HAL1 LINE L1 1936 2210 -297 418 296 187 0 chr3 45292949 45293179 -172743979 + HAL1 LINE L1 2230 2502 -5 22 35 0 0 chr3 45293619 45293648 -172743510 + AT_rich Low_complexity Low_complexity 1 29 0 232 217 29 0 chr3 45293818 45293887 -172743271 + HAL1 LINE L1 2058 2128 -379 203 273 0 0 chr3 45296070 45296114 -172741044 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 350 10 68 chr3 45296501 45296604 -172740554 - MIR3 SINE MIR -111 97 1 209 265 29 0 chr3 45297375 45297443 -172739715 + (TA)n Simple_repeat Simple_repeat 1 70 0 232 319 155 17 chr3 45297459 45297575 -172739583 + MIR3 SINE MIR 10 141 -67 2758 74 6 0 chr3 45297799 45298150 -172739008 + THE1A LTR MaLR 3 355 0 11598 86 11 9 chr3 45298150 45299727 -172737431 + THE1A-int LTR MaLR 1 1580 0 2757 76 3 0 chr3 45299727 45300081 -172737077 + THE1A LTR MaLR 1 355 0 969 168 21 0 chr3 45300338 45300528 -172736630 + L1PB1 LINE L1 2 195 -6668 11900 186 28 55 chr3 45300533 45302329 -172734829 + L1PB1 LINE L1 1111 2954 -3913 264 30 0 0 chr3 45302329 45302362 -172734796 + (CA)n Simple_repeat Simple_repeat 2 34 0 11900 186 28 55 chr3 45302362 45305098 -172732060 + L1PB1 LINE L1 2954 5703 -1164 2924 85 44 21 chr3 45305098 45305532 -172731626 + MLT2A1 LTR ERVL 1 444 0 11900 186 28 55 chr3 45305532 45306667 -172730491 + L1PB1 LINE L1 5703 6867 0 6081 31 3 5 chr3 45306693 45307464 -172729694 + L1PA4 LINE L1 5254 6022 -133 518 115 0 23 chr3 45307590 45307677 -172729481 + AluJ/FRAM SINE Alu 221 305 -7 481 286 76 50 chr3 45307678 45308611 -172728547 + L1 LINE L1 2888 3878 -2268 2193 131 3 10 chr3 45309982 45310296 -172726862 - AluSx SINE Alu 0 312 1 508 189 11 108 chr3 45311072 45311257 -172725901 - MER112 DNA MER1_type -20 240 74 397 268 80 0 chr3 45311619 45311731 -172725427 + MIR SINE MIR 124 244 -18 196 419 0 0 chr3 45311757 45311831 -172725327 - MIR SINE MIR -169 93 20 222 284 0 25 chr3 45312226 45312307 -172724851 + CT-rich Low_complexity Low_complexity 1 79 0 805 217 57 0 chr3 45312501 45312676 -172724482 - MER5A DNA MER1_type -2 187 3 22439 100 12 2 chr3 45312787 45316250